Citrus Sinensis ID: 018973

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------35
Protein Sequence
MTEIFIIDISVVSALPRSHPWKHSNSIQSNANSISGAWSGCGWILALHSMAVVTNFILKLPLSLSANPKFTPLRSPHSLFSPPIFAKPQSLTKPKTSRTQLLITKATAAPGTKNAPRDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQLMGDVLYYGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQGVRVTY
Secondary Structure (PSIPRED)
ccEEEEEEEEEEEcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccEEEEccHHHHHHHHHHccccEEEEEEEcccccccccHHHHHHHHHHHccccEEEEEEccccccHHHHHHHcccEEccEEEEEEccEEEEEEEEcccccccccccccccccccccccccHHHHHHHHHHccccccEEEEEEEccccccccHHHHHHHHHHHHccccEEEEEEEccccHHHHHHHHHcccEEccEEEEEEccEEEEEEEcccHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEEEcccccccccccccccHcccccccHHHHHcHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccEEEccHHHHHHHHHHccccEEEEEEEccccHHHHHHHHHHHHHHHHcccEEEEEEEccccHHHHHHccHccccEccEEEEEccccEEEEEccccHHHHcccEEEEcccccEEEEEccHHHHHHHHHHHcccccEEEEEEEcccccHHHHHHHHHHHHHHHccccEEEEEEEccccHHHHHHHHHccccEccEEEEEEccEEEEEEEcccHHHHHHHHHHHcccEEEc
Coil and Loop (DISEMBL)
MTEIFIIDISvvsalprshpwkhsnsiqsnansisgawsGCGWILALHSMAVVTNFILKlplslsanpkftplrsphslfsppifakpqsltkpktsrTQLLITkataapgtknaprdervkkVHSIEEFDEALRLAKNKLVVVEFAAsrsldsskiypfMVDLSRQCNDVEFILVMGDESEKTKELCERekikkvphfsfyksMEKIheeegigpdqlmgdvlyygdsHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVglkhcgpcvkvyPTVIKLSRQMAGTVVFArmngdendsCMQFLRDmnvvevptflfirdgqirgryvgsgkgELIGEILRYQGVRVTY
Flexible Loop (DISEMBL)
MTEIFIIDISVVSALPRSHPWKHSNSIQSNANSISGAWSGCGWILALHSMAVVTNFILKLPLSLSANPKFTPLRSPHSLFSPPIfakpqsltkpktsrTQLLitkataapgtknaprdervkkVHSIEEFDEALRLAKNKLVVVEFaasrsldsskiypFMVDLSRQCNDVEFILVMGdesektkelcerekikkvphfsfyKSMEKIHEEEGIGPDQLMGDVLYYGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDvglkhcgpcVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFlfirdgqirgryvgsgkgeligeilryqgvrvty
Low Complexity Region (SEG)
MTEIFIIDISVVSALPRSHPWKHsnsiqsnansisGAWSGCGWILALHSMAVVTNFILKLPLSLSANPKFTPLRSPHSLFSPPIFAKPQSLTKPKTSRTQLLITKATAAPGTKNAPRDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQLMGDVLYYGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQGVRVTY
Disordered region (IsUnstruct)
***IFIIDISVVSALPRSHPW*********ANSISGAWSGCGWILALHSMAVVTNFILKLPLSLSA************************************************************IEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGD*******LCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQLMGDVLYYGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQGVR***
Disordered Region (DISOPRED)
*TEIFIIDISVVSALPRSHPWKHSNSIQSNANSISGAWSGCGWILALHSMAVVTNF*******************************************************************VHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQLMGDVLYYGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQGV****
Disordered Region (DISEMBL)
MTEIFIIDISVVSALPRSHPWKHSNSIQSNANSISGAWSGCGWILALHSMAVVTNFILKLPLSLSANPKFTPLRSPHSLFSPPIFAKPQSLTKPKTSRTQLLITKATAAPGTKNAPRDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQLMGDVLYYGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQGVRVTY
Disordered Region (DISPRO)
MTEIFIIDISVVSALPRSHPWKHSNSI*SNANSISGAWSGCGWILALHSMAVVTNFILKLPLSLSANPKFTPLRSPHSLFSPPIFAKP*******************************RVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQLMGDVLYYGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQGVRVTY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTEIFIIDISVVSALPRSHPWKHSNSIQSNANSISGAWSGCGWILALHSMAVVTNFILKLPLSLSANPKFTPLRSPHSLFSPPIFAKPQSLTKPKTSRTQLLITKATAAPGTKNAPRDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQLMGDVLYYGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQGVRVTY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	348	2.2.26 [Sep-21-2011]
Q9SGS4	302	Thioredoxin-like protein	yes	no	0.850	0.980	0.675	1e-114
Q84NN4	301	Thioredoxin-like protein	yes	no	0.681	0.787	0.728	1e-104
Q6Z4I3	138	Thioredoxin H2-1 OS=Oryza	no	no	0.284	0.717	0.376	3e-10
Q39239	119	Thioredoxin H4 OS=Arabido	no	no	0.313	0.915	0.285	1e-08
Q42403	118	Thioredoxin H3 OS=Arabido	no	no	0.310	0.915	0.285	5e-08
Q39241	118	Thioredoxin H5 OS=Arabido	no	no	0.310	0.915	0.285	5e-08
A2YIW7	122	Thioredoxin H-type OS=Ory	N/A	no	0.307	0.877	0.288	6e-08
Q0D840	122	Thioredoxin H1 OS=Oryza s	no	no	0.307	0.877	0.288	6e-08
P10639	105	Thioredoxin OS=Mus muscul	yes	no	0.298	0.990	0.345	1e-07
O64394	127	Thioredoxin H-type OS=Tri	N/A	no	0.293	0.803	0.301	1e-07

>sp|Q9SGS4|CDSP_ARATH Thioredoxin-like protein CDSP32, chloroplastic OS=Arabidopsis thaliana GN=CDSP32 PE=1 SV=1

 Score =  412 bits (1060), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 206/305 (67%), Positives = 240/305 (78%), Gaps = 9/305 (2%)

Query: 50  MAVVTNFILKLPLSLSANPKFTPLRSPHSLF----SPPIFAKPQSLTKPKTSRTQLLITK 105
           MA V NF+ K   ++   P      +   +F    + P+F +      PK   + + I  
Sbjct: 1   MATVANFLAKPISTVVPRPSSAVASTSSFVFFNHKTNPLFRRKNL---PKRLFSAVKIKA 57

Query: 106 ATAAPGTKNAP--RDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVD 163
             A+PG    P   DE+V+K+HS EEFD AL+ AK+KLVV EFA S+S  S+KIYPFMV+
Sbjct: 58  GAASPGKVGTPPANDEKVQKIHSGEEFDVALKNAKSKLVVAEFATSKSDQSNKIYPFMVE 117

Query: 164 LSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQLMGDV 223
           LSR CNDV F+LVMGDES+KT+ELC REKI+KVPHFSFYKSMEKIHEEEGI PDQLMGDV
Sbjct: 118 LSRTCNDVVFLLVMGDESDKTRELCRREKIEKVPHFSFYKSMEKIHEEEGIEPDQLMGDV 177

Query: 224 LYYGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMA 283
           LYYGD+HSAVVQLH + DVEKLID+++   KLIVLDVGLKHCGPCVKVYPTV+KLSR M+
Sbjct: 178 LYYGDNHSAVVQLHGRPDVEKLIDENRTGGKLIVLDVGLKHCGPCVKVYPTVLKLSRSMS 237

Query: 284 GTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQG 343
            TVVFARMNGDENDSCM+FL+DMNV+EVPTFLFIRDG+IRGRYVGSGKGELIGEILRY G
Sbjct: 238 ETVVFARMNGDENDSCMEFLKDMNVIEVPTFLFIRDGEIRGRYVGSGKGELIGEILRYSG 297

Query: 344 VRVTY 348
           VRVTY
Sbjct: 298 VRVTY 302

Probable thiol-disulfide oxidoreductase involved in resistance to oxidative stress. May participate in the reduction of alkyl hydroperoxides derived from oxidative stress by acting as a physiological electron donor to the BAS1 peroxiredoxin. May regenerate methionine sulfoxide reductase B1 (MSRB1) activity through sulfenic acid reduction.
Arabidopsis thaliana (taxid: 3702)

>sp|Q84NN4|CDSP_ORYSJ Thioredoxin-like protein CDSP32, chloroplastic OS=Oryza sativa subsp. japonica GN=CDSP32 PE=2 SV=1

 Score =  378 bits (971), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 182/250 (72%), Positives = 204/250 (81%), Gaps = 13/250 (5%)

Query: 111 GTKNAPR------------DERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIY 158
           GT+ AP             DERV +VHS EE D ALR AK +LVVVEFAAS S++SS+IY
Sbjct: 52  GTEQAPETTKKKGGGGGGGDERVVQVHSAEELDGALRAAKERLVVVEFAASHSVNSSRIY 111

Query: 159 PFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQ 218
           P MV+LSR C DV+F+LVMGDES+ T+ELC RE I  VPHF+FYK  EK+HEEEGIGPDQ
Sbjct: 112 PCMVELSRTCGDVDFLLVMGDESDATRELCRREGITAVPHFTFYKGAEKVHEEEGIGPDQ 171

Query: 219 LMGDVLYYGDSHSAVVQLHSKEDVEKLIDDHKVD-QKLIVLDVGLKHCGPCVKVYPTVIK 277
           L GDVLYYGD HSAVVQLHS+ DVE LI DH+ +  KL+VLDVGLK CGPCVKVYPTV+K
Sbjct: 172 LAGDVLYYGDHHSAVVQLHSRADVESLISDHRGEGGKLVVLDVGLKRCGPCVKVYPTVVK 231

Query: 278 LSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGE 337
           LSR MA T VFARMNGDENDSCM+FLRDM+VVEVPTFLFIRDG I GRYVGSG+GELIGE
Sbjct: 232 LSRTMADTTVFARMNGDENDSCMEFLRDMDVVEVPTFLFIRDGDIVGRYVGSGRGELIGE 291

Query: 338 ILRYQGVRVT 347
           ILRY GV+VT
Sbjct: 292 ILRYNGVKVT 301

Thiol-disulfide oxidoreductase that may participate in various redox reactions. May act as electron donor to the BAS1 peroxiredoxin. Possesses low insulin disulfide bonds reducing activity.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6Z4I3|TRH21_ORYSJ Thioredoxin H2-1 OS=Oryza sativa subsp. japonica GN=Os07g0190800 PE=2 SV=1

 Score = 66.2 bits (160), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 57/109 (52%), Gaps = 10/109 (9%)

Query: 229 SHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG---T 285
             SAVV +HSK   ++L D HK   KL+V+D     CGPC  + P      ++MAG    
Sbjct: 19  GESAVVAVHSKAKWDELWDAHKNTTKLVVIDFSASWCGPCKMMEPVF----KEMAGRFTD 74

Query: 286 VVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGEL 334
           V F +++ DE     +  R   V  +PTF+  R G+  GR VG+ K EL
Sbjct: 75  VAFLKVDVDE---LAEVARTWRVEAMPTFVLARGGEEVGRIVGADKDEL 120

Probable thiol-disulfide oxidoreductase that may be involved in the redox regulation of a number of cytosolic enzymes.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q39239|TRXH4_ARATH Thioredoxin H4 OS=Arabidopsis thaliana GN=TRX4 PE=3 SV=2

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 60/112 (53%), Gaps = 3/112 (2%)

Query: 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
           V+  H+ +     +D  K   KLIV+D     C PC  + P    L+++   + +F +++
Sbjct: 8   VIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAIFFKVD 67

Query: 293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQGV 344
            DE  S     ++  V  +PTF+FI+ G++  + VG+ K +L  +I+++ GV
Sbjct: 68  VDELQSVA---KEFGVEAMPTFVFIKAGEVVDKLVGANKEDLQAKIVKHTGV 116

Thiol-disulfide oxidoreductase probably involved in the redox regulation of a number of cytosolic enzymes. Possesses insulin disulfide bonds reducing activity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q42403|TRXH3_ARATH Thioredoxin H3 OS=Arabidopsis thaliana GN=TRX3 PE=1 SV=1

 Score = 58.9 bits (141), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 62/112 (55%), Gaps = 4/112 (3%)

Query: 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
           V+  H+ ED  + +      +KLIV+D     C PC  + P    L+++    VVF +++
Sbjct: 7   VIACHTVEDWTEKLKAANESKKLIVIDFTATWCPPCRFIAPVFADLAKKHLD-VVFFKVD 65

Query: 293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQGV 344
            DE ++  +   +  V  +PTF+F+++G+I+   VG+ K E+I  + +++ V
Sbjct: 66  VDELNTVAE---EFKVQAMPTFIFMKEGEIKETVVGAAKEEIIANLEKHKTV 114

Thiol-disulfide oxidoreductase that possesses disulfide reductase and insulin disulfide bonds reducing activities. Heat shock causes oligomerization and formation of high molecular weight (HMW) complexes with concomitant functional switching from a disulfide reductase to chaperone.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39241|TRXH5_ARATH Thioredoxin H5 OS=Arabidopsis thaliana GN=TRX5 PE=1 SV=1

 Score = 58.9 bits (141), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 62/112 (55%), Gaps = 4/112 (3%)

Query: 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
           V+  H+ E   + + D    +KLIV+D     C PC  + P   +++++    VVF +++
Sbjct: 7   VIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFT-NVVFFKID 65

Query: 293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQGV 344
            DE  +  Q   +  V  +PTF+F+++G I  R VG+ K E+  +++++ G+
Sbjct: 66  VDELQAVAQ---EFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKLMKHGGL 114

Thiol-disulfide oxidoreductase involved in response to pathogens and oxidative stresses. Required for the response to victorin, a phytotoxin which induces programmed cell death in sensitive plants. Possesses insulin disulfide bonds reducing activity.

Arabidopsis thaliana (taxid: 3702)

>sp|A2YIW7|TRXH_ORYSI Thioredoxin H-type OS=Oryza sativa subsp. indica GN=TRXH PE=1 SV=1

 Score = 58.5 bits (140), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 59/111 (53%), Gaps = 4/111 (3%)

Query: 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
           V+  H+K++ +  +   K   K++++D     CGPC  + P   + +++  G V F +++
Sbjct: 8   VIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAV-FLKVD 66

Query: 293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQG 343
            DE     +     NV  +PTFLFI+DG    + VG+ K +L   I+++ G
Sbjct: 67  VDE---LKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVG 114

Participates in various redox reactions through the reversible oxidation of the active center dithiol to a disulfide. The H form is known to activate a number of cytosolic enzymes.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q0D840|TRXH1_ORYSJ Thioredoxin H1 OS=Oryza sativa subsp. japonica GN=TRXH PE=1 SV=1

 Score = 58.5 bits (140), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 59/111 (53%), Gaps = 4/111 (3%)

Query: 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
           V+  H+K++ +  +   K   K++++D     CGPC  + P   + +++  G V F +++
Sbjct: 8   VIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAV-FLKVD 66

Query: 293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQG 343
            DE     +     NV  +PTFLFI+DG    + VG+ K +L   I+++ G
Sbjct: 67  VDE---LKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVG 114

Thiol-disulfide oxidoreductase involved in the redox regulation of MAP kinases. Under reducing conditions, inhibits MPK1 and MPK5 kinase activities. Mediates its own transport from cell-to-cell through plasmodesmata. Possesses insulin disulfide bonds reducing activity.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P10639|THIO_MOUSE Thioredoxin OS=Mus musculus GN=Txn PE=1 SV=3

 Score = 58.2 bits (139), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 3/107 (2%)

Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180
           VK + S E F EAL  A +KLVVV+F+A+       I PF   L  + ++V F+ V  D+
Sbjct: 2   VKLIESKEAFQEALAAAGDKLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDD 61

Query: 181 SEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQLMGDVLYYG 227
            +     CE   +K +P F FYK  +K+ E  G   ++L   +  Y 
Sbjct: 62  CQDVAADCE---VKCMPTFQFYKKGQKVGEFSGANKEKLEASITEYA 105

ADF augments the expression of the interleukin-2 receptor TAC (IL2R/P55).

Mus musculus (taxid: 10090)

>sp|O64394|TRXH_WHEAT Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 57/106 (53%), Gaps = 4/106 (3%)

Query: 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
           V+ +HS E     I++    +KL+V+D     CGPC  + P    L+++     VF +++
Sbjct: 20  VISVHSLEQWTMQIEEANAAKKLVVIDFTASWCGPCRIMAPIFADLAKKFPAA-VFLKVD 78

Query: 293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEI 338
            DE     +     +V  +PTFLF+++G ++ R VG+ K EL  ++
Sbjct: 79  VDELKPIAE---QFSVEAMPTFLFMKEGDVKDRVVGAIKEELTTKV 121

Participates in various redox reactions through the reversible oxidation of the active center dithiol to a disulfide. The H form is known to activate a number of cytosolic enzymes.

Triticum aestivum (taxid: 4565)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	348
255539068	299	conserved hypothetical protein [Ricinus	0.856	0.996	0.743	1e-126
225459760	298	PREDICTED: thioredoxin-like protein CDSP	0.853	0.996	0.746	1e-122
2582822	296	CDSP32 protein (Chloroplast Drought-indu	0.844	0.993	0.727	1e-120
388497384	298	unknown [Lotus japonicus]	0.847	0.989	0.745	1e-119
302120398	299	chloroplast drought-induced stress prote	0.850	0.989	0.735	1e-118
312282483	306	unnamed protein product [Thellungiella h	0.844	0.960	0.697	1e-116
356553329	292	PREDICTED: thioredoxin-like protein CDSP	0.833	0.993	0.691	1e-114
449450484	297	PREDICTED: thioredoxin-like protein CDSP	0.850	0.996	0.71	1e-114
388519395	298	unknown [Medicago truncatula]	0.844	0.986	0.709	1e-113
15222954	302	thioredoxin-like protein CDSP32 [Arabido	0.850	0.980	0.675	1e-112

>gi|255539068|ref|XP_002510599.1| conserved hypothetical protein [Ricinus communis] gi|223551300|gb|EEF52786.1| conserved hypothetical protein [Ricinus communis]

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 223/300 (74%), Positives = 256/300 (85%), Gaps = 2/300 (0%)

Query: 50  MAVVTNFILKLPLSLSANPKFTPLRSPHSLFSPPIFAKPQSLTKP-KTSRTQLLITKATA 108
           MA ++NF+ K P SLS  P+ +PL    S F  P  AK +  +K  +T+RT  ++ KATA
Sbjct: 1   MAAISNFLSKPPSSLSIIPRISPLCYQGSPFVLPFSAKHKLTSKKLETNRTNFIL-KATA 59

Query: 109 APGTKNAPRDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQC 168
           A   K    DE+V+K+HS+EEFDEAL+ AKN+LVVVE+AAS SL+S KIYPFMVDLSR C
Sbjct: 60  ASDIKKPINDEKVQKIHSVEEFDEALKAAKNRLVVVEYAASHSLNSQKIYPFMVDLSRTC 119

Query: 169 NDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQLMGDVLYYGD 228
           +DV+F+LVMGDESEKT+ELC+REK+ KVPHFSFYKSMEKIHEE+ IGPDQLMGDVLYYGD
Sbjct: 120 SDVDFLLVMGDESEKTRELCKREKVDKVPHFSFYKSMEKIHEEDAIGPDQLMGDVLYYGD 179

Query: 229 SHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVF 288
           SHS VVQLH +EDVEKLID HK D KLIVLDVGLKHCGPCVKVYPTV+KLSRQM+ +VVF
Sbjct: 180 SHSGVVQLHCREDVEKLIDGHKADHKLIVLDVGLKHCGPCVKVYPTVVKLSRQMSDSVVF 239

Query: 289 ARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQGVRVTY 348
           ARMNGDENDSCMQFLRDM+VVEVPTFLFIR+G+I GRYVGSGKGELIGEILRYQGVRVTY
Sbjct: 240 ARMNGDENDSCMQFLRDMDVVEVPTFLFIREGKISGRYVGSGKGELIGEILRYQGVRVTY 299

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459760|ref|XP_002285902.1| PREDICTED: thioredoxin-like protein CDSP32, chloroplastic [Vitis vinifera]

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 224/300 (74%), Positives = 244/300 (81%), Gaps = 3/300 (1%)

Query: 50  MAVVTNFILKLPLSLSANPKFTPLRSPHSLFSPPIFAKPQSLTKPKTSRTQLLITKATAA 109
           MA + NF+ K P SL   PK   L S  S        +P  +    +  T     KATAA
Sbjct: 1   MATIANFLSKPPSSLP--PKINALSSVFSSSLSFTKPRPLMMKLGTSRSTNSFTVKATAA 58

Query: 110 PG-TKNAPRDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQC 168
           P  TK A  DERVK VHSIEEFDEALR AKNKLVVVEF AS S+ S KIYPFMVDLSRQC
Sbjct: 59  PSKTKKAESDERVKHVHSIEEFDEALRTAKNKLVVVEFGASHSIHSKKIYPFMVDLSRQC 118

Query: 169 NDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQLMGDVLYYGD 228
           +DVEF+LVMGDESEKT+ELC+RE I +VPHFSFYK+ EKIHEEEGIGPD+LMGDVLYYGD
Sbjct: 119 SDVEFLLVMGDESEKTRELCQRENIDQVPHFSFYKNKEKIHEEEGIGPDELMGDVLYYGD 178

Query: 229 SHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVF 288
           +HSAVVQLHS EDVE+LI DHK D KLIVLDVGLKHCGPCVKVYPTVIKLSRQM  TVVF
Sbjct: 179 NHSAVVQLHSGEDVERLIQDHKADNKLIVLDVGLKHCGPCVKVYPTVIKLSRQMTDTVVF 238

Query: 289 ARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQGVRVTY 348
           ARMNGDENDSCM+FL++M+VVEVPTFLFIRDG+I GRYVGSGKGELIGEILRYQGVRVTY
Sbjct: 239 ARMNGDENDSCMKFLKEMDVVEVPTFLFIRDGEICGRYVGSGKGELIGEILRYQGVRVTY 298

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2582822|emb|CAA71103.1| CDSP32 protein (Chloroplast Drought-induced Stress Protein of 32kDa) [Solanum tuberosum]

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 219/301 (72%), Positives = 250/301 (83%), Gaps = 7/301 (2%)

Query: 50  MAVVTNFILKLPLSLSANPKFTPLRSPHSLFSPPIFAKP-QSLTKPKTSRTQLLITKATA 108
           MA +TNF+LK   +L++  K +P     SL+S   F K  QS+ K   +   LLITKATA
Sbjct: 1   MATLTNFLLKPSPNLASITKISP-----SLYSNFPFEKSKQSIFKNLKTNKPLLITKATA 55

Query: 109 APGT-KNAPRDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQ 167
           AP   K   + ERV+KV+S+EE DEAL+ AKN+LVVVEFA   S  S  IYPFMV+LS+ 
Sbjct: 56  APDVEKKVAKSERVQKVNSMEELDEALKKAKNRLVVVEFAGKDSERSKNIYPFMVNLSKT 115

Query: 168 CNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQLMGDVLYYG 227
           CNDV+F+LV+GDE+EKTK LC REKI KVPHF+FYKSMEKIHEEEGIGPD L GDVLYYG
Sbjct: 116 CNDVDFLLVIGDETEKTKALCRREKIDKVPHFNFYKSMEKIHEEEGIGPDLLAGDVLYYG 175

Query: 228 DSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVV 287
           DSHS VVQLHS+EDVEK+I DHK+D+KLIVLDVGLKHCGPCVKVYPTVIKLS+QMA TVV
Sbjct: 176 DSHSEVVQLHSREDVEKVIQDHKIDKKLIVLDVGLKHCGPCVKVYPTVIKLSKQMADTVV 235

Query: 288 FARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQGVRVT 347
           FARMNGDENDSCMQFL+DM+V+EVPTFLFIRDG+I GRYVGSGKGELIGEILRYQGVRVT
Sbjct: 236 FARMNGDENDSCMQFLKDMDVIEVPTFLFIRDGEICGRYVGSGKGELIGEILRYQGVRVT 295

Query: 348 Y 348
           Y
Sbjct: 296 Y 296

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497384|gb|AFK36758.1| unknown [Lotus japonicus]

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 225/302 (74%), Positives = 251/302 (83%), Gaps = 7/302 (2%)

Query: 50  MAVVT--NFILKLPLSLSANPKFTPLRSPHSLFSPPIFAKPQSLTKPKTSRTQLLITKAT 107
           MA +T  NFI K PLS S + K     S  SL       K ++  + + S +   ITKAT
Sbjct: 1   MATITTSNFICKPPLSPSTHRKLLLRSS--SLSITSTLTKNKTPIQLRASHSH--ITKAT 56

Query: 108 AAP-GTKNAPRDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSR 166
           AA  GTK A RDERV++VHSIEEFD AL  AK+KLVVVE+A S S +SS+IYPF+V+LSR
Sbjct: 57  AASSGTKKAERDERVQRVHSIEEFDSALLSAKDKLVVVEYALSDSSESSEIYPFLVELSR 116

Query: 167 QCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQLMGDVLYY 226
            CNDVEF+LVMGDES+KTK LC+REK+ KVPHF+FYKS EKIHEE+ IGPD L+GDVLYY
Sbjct: 117 TCNDVEFLLVMGDESDKTKGLCKREKVDKVPHFTFYKSREKIHEEDAIGPDMLVGDVLYY 176

Query: 227 GDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTV 286
           GDSHSAVVQLHS+EDVEKLI+DHKVD KL+VLDVGLKHCGPCVKVYPTVIKLSR MA TV
Sbjct: 177 GDSHSAVVQLHSREDVEKLIEDHKVDSKLVVLDVGLKHCGPCVKVYPTVIKLSRSMADTV 236

Query: 287 VFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQGVRV 346
           VFARMNGDENDSCMQFLRDM VV+VPTFLFIRDGQIRGRYVGSGKGELIGEILRYQGVRV
Sbjct: 237 VFARMNGDENDSCMQFLRDMEVVQVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQGVRV 296

Query: 347 TY 348
           TY
Sbjct: 297 TY 298

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302120398|gb|ADK92409.1| chloroplast drought-induced stress protein [Vigna radiata]

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 222/302 (73%), Positives = 251/302 (83%), Gaps = 6/302 (1%)

Query: 50  MAVVTNFIL-KLPLSLSANPKFTPLRSPHSL--FSPPIFAKPQSLTKPKTSRTQLLITKA 106
           MA +TN +L K P+SL  +P+  PL S  S   F P I +   S T P  +RT L I +A
Sbjct: 1   MATLTNNLLFKSPVSLFPHPRLLPLLSYASTLPFLPKISSSRISST-PNYNRTPL-IPRA 58

Query: 107 TAAPGTKNAPRDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSR 166
           TAAPG K A + ERV++VHSI+EFD AL  AK +LVVVE+AAS S +SS+IYPFMV+LSR
Sbjct: 59  TAAPGAKKAEKKERVQRVHSIQEFDSALESAKERLVVVEYAASDSEESSQIYPFMVELSR 118

Query: 167 QCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQLMGDVLYY 226
            C+DVEFILVMGDES +TKEL +REK++ VPHFSFYKS EKIHEEEGIGPD L+GDVLYY
Sbjct: 119 SCSDVEFILVMGDESAQTKELLKREKVENVPHFSFYKSREKIHEEEGIGPDMLVGDVLYY 178

Query: 227 GDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTV 286
           GDSHSAV QLHS EDV+KLI+DHKVD KLIVLDVGLKHCGPCVKVYPTV+KLSRQM  +V
Sbjct: 179 GDSHSAVEQLHSVEDVQKLIEDHKVDHKLIVLDVGLKHCGPCVKVYPTVVKLSRQM-DSV 237

Query: 287 VFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQGVRV 346
           VFARMNGDEN+SCMQFLRDM VV+VPTFLFIRDG I GRYVGSGKGELIGEILRYQGVRV
Sbjct: 238 VFARMNGDENESCMQFLRDMEVVQVPTFLFIRDGNIEGRYVGSGKGELIGEILRYQGVRV 297

Query: 347 TY 348
           TY
Sbjct: 298 TY 299

Source: Vigna radiata

Species: Vigna radiata

Genus: Vigna

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282483|dbj|BAJ34107.1| unnamed protein product [Thellungiella halophila]

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 217/311 (69%), Positives = 248/311 (79%), Gaps = 17/311 (5%)

Query: 50  MAVVTNFILKLPLSLSANPKFTPLRSPHSLFSPPIFAKP--------QSLTK-PKTSRTQ 100
           MA V NF+ K P++ +  P+ +   +  S F   IF  P        QSL + P   R  
Sbjct: 1   MATVANFLAK-PIA-TVVPRLSSAGASTSSF---IFFDPKPNSLLLKQSLIRIPSRRRLS 55

Query: 101 LLITKATAA-PGTKNAP--RDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKI 157
            +  KA AA PG   +P  +DE+V+K+HS EEFDEAL+ AKNKLVV EFA S+S  S+KI
Sbjct: 56  AVKVKAGAASPGKVGSPAAKDEKVQKIHSGEEFDEALKNAKNKLVVAEFATSKSDQSNKI 115

Query: 158 YPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPD 217
           YPFMVDLSR CNDV F+L+MGDESEKT+ELC REKI+KVPHFSFYKSMEKIHEEEGIGPD
Sbjct: 116 YPFMVDLSRTCNDVVFLLIMGDESEKTRELCRREKIEKVPHFSFYKSMEKIHEEEGIGPD 175

Query: 218 QLMGDVLYYGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIK 277
           QLMGDVLYYGD+HSAVVQLH + DVEKLID+++   KLIVLDVGLKHCGPCVKVYPTV+K
Sbjct: 176 QLMGDVLYYGDNHSAVVQLHGRADVEKLIDENRTGGKLIVLDVGLKHCGPCVKVYPTVLK 235

Query: 278 LSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGE 337
           LSR M+ TVVFARMNGDENDSCM+FL+DMNV+EVPTFLFIRDG I GRYVGSGKGELIGE
Sbjct: 236 LSRSMSETVVFARMNGDENDSCMEFLKDMNVIEVPTFLFIRDGDICGRYVGSGKGELIGE 295

Query: 338 ILRYQGVRVTY 348
           ILRY GVRVTY
Sbjct: 296 ILRYSGVRVTY 306

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553329|ref|XP_003545009.1| PREDICTED: thioredoxin-like protein CDSP32, chloroplastic-like [Glycine max]

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 208/301 (69%), Positives = 241/301 (80%), Gaps = 11/301 (3%)

Query: 50  MAVVTN-FILKLPLSLSANPKFTPLRSPHSLFSPPIFAKPQSLTKPKTSRTQLLITKATA 108
           MA +TN FI K P+S          RS     +            P  + ++ L+ KATA
Sbjct: 1   MATITNTFIFKPPISHHPKQLLYSHRSSLRFLT--------KFKTPSGANSRRLVPKATA 52

Query: 109 APGTKNAPR-DERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQ 167
           APG K   +  ERV++VHS+EEF+ AL  AK++LVVVE+AAS S +SS+IYPFMV+LSR 
Sbjct: 53  APGAKKTEKPHERVQRVHSVEEFESALESAKDRLVVVEYAASDSEESSQIYPFMVELSRS 112

Query: 168 CNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQLMGDVLYYG 227
           CNDVEFILVMGDESEKTKEL +REK++ VPHFSFYKS EKIHEEEGIGPD L+GDVLYYG
Sbjct: 113 CNDVEFILVMGDESEKTKELLKREKVENVPHFSFYKSKEKIHEEEGIGPDMLVGDVLYYG 172

Query: 228 DSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVV 287
           D+HS VVQLH+ EDV+KLI+DHK+D KLIVLDVGLKHCGPCVKVYPTV+KLSRQM  +VV
Sbjct: 173 DNHSGVVQLHNVEDVQKLIEDHKLDHKLIVLDVGLKHCGPCVKVYPTVVKLSRQM-DSVV 231

Query: 288 FARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQGVRVT 347
           FARMNGDEN+SCMQFL+DM V++VPTFLFIRDG I GRYVGSGKGELIGEILRYQGVRVT
Sbjct: 232 FARMNGDENESCMQFLKDMEVIQVPTFLFIRDGNIEGRYVGSGKGELIGEILRYQGVRVT 291

Query: 348 Y 348
           Y
Sbjct: 292 Y 292

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450484|ref|XP_004142992.1| PREDICTED: thioredoxin-like protein CDSP32, chloroplastic-like [Cucumis sativus] gi|449500345|ref|XP_004161072.1| PREDICTED: thioredoxin-like protein CDSP32, chloroplastic-like [Cucumis sativus]

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/300 (71%), Positives = 240/300 (80%), Gaps = 4/300 (1%)

Query: 50  MAVVTNFILKLPLSL-SANPKFTPLRSPHSLFSPPIFAKPQSLTKPKTSRTQLLITKATA 108
           MA  ++ +   P SL + NP+  P   P+ +  P   + P           + L   A A
Sbjct: 1   MASFSHSLATPPPSLYTHNPR--PSLIPNLIKLPAASSLPPQRITTTRRARRALQIHAAA 58

Query: 109 APGTKNAPRDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQC 168
           +P  K    DERV KVHS EEFDEAL+ AK KLVVVE+AAS S  SS++YPFMV LSR C
Sbjct: 59  SPSVKKQSSDERVLKVHSKEEFDEALKKAKGKLVVVEYAASDSEQSSQMYPFMVSLSRSC 118

Query: 169 NDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQLMGDVLYYGD 228
           +DVEFILVMGDESEKTKELC+REKI+KVPHFSFYK+MEKIHEEEGIGPDQL GDVLYYGD
Sbjct: 119 SDVEFILVMGDESEKTKELCDREKIEKVPHFSFYKNMEKIHEEEGIGPDQLEGDVLYYGD 178

Query: 229 SHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVF 288
           +HSAVVQLHS EDVEKLI +HK D KLIVLDVGLKHCGPCVKVYPTVIKLSR+M  TVVF
Sbjct: 179 NHSAVVQLHSGEDVEKLIGEHKEDHKLIVLDVGLKHCGPCVKVYPTVIKLSRKME-TVVF 237

Query: 289 ARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQGVRVTY 348
           ARMNGDEN SCM+FL++MNVVEVPTFLFIRDG+I+GRYVGSG+GELIGEILRYQGVRVTY
Sbjct: 238 ARMNGDENQSCMKFLKEMNVVEVPTFLFIRDGEIKGRYVGSGRGELIGEILRYQGVRVTY 297

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519395|gb|AFK47759.1| unknown [Medicago truncatula]

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/303 (70%), Positives = 245/303 (80%), Gaps = 9/303 (2%)

Query: 50  MAVVTNFILKLPLSLSANPKFTPLRS-PHSLFSPPIFAK--PQSLTKPKTSRTQLLITKA 106
           MA + NFI K P   S    F  L S P S+  P I+++  P S    +  R +++ITKA
Sbjct: 1   MATI-NFICK-PSIPSIPISFPTLHSLPSSI--PKIYSRVGPSSNLHLQ-QRRRVVITKA 55

Query: 107 TA-APGTKNAPRDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLS 165
           T  A       +D RV++VHSIEEFDEAL  AK+KLVVVE+A S   +S +IYPF+VDLS
Sbjct: 56  TGTAASDAKKKKDARVQRVHSIEEFDEALESAKDKLVVVEYATSDDSESIEIYPFLVDLS 115

Query: 166 RQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQLMGDVLY 225
           R CNDVEF+LVMGDESEKTKELC+REK+ KVPHF+F KS EKIHEEE IGPD L+GDVLY
Sbjct: 116 RTCNDVEFLLVMGDESEKTKELCKREKVDKVPHFTFCKSKEKIHEEEAIGPDMLVGDVLY 175

Query: 226 YGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGT 285
           YGD+HS VVQLH++EDVEKLI+DHK+D KLIVLDVGLKHCGPCVKVYPTVIKLSRQM  T
Sbjct: 176 YGDNHSGVVQLHNREDVEKLIEDHKIDHKLIVLDVGLKHCGPCVKVYPTVIKLSRQMNDT 235

Query: 286 VVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQGVR 345
           V+FARMNGDENDSCMQFLRDM VV+VPTFLFIRDG+I GRYVGSGKGELIGEILRYQGVR
Sbjct: 236 VIFARMNGDENDSCMQFLRDMEVVQVPTFLFIRDGKIAGRYVGSGKGELIGEILRYQGVR 295

Query: 346 VTY 348
           VTY
Sbjct: 296 VTY 298

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15222954|ref|NP_177735.1| thioredoxin-like protein CDSP32 [Arabidopsis thaliana] gi|75205048|sp|Q9SGS4.1|CDSP_ARATH RecName: Full=Thioredoxin-like protein CDSP32, chloroplastic; AltName: Full=Chloroplastic drought-induced stress protein of 32 KDa; Short=AtCDSP32; Flags: Precursor gi|6573731|gb|AAF17651.1|AC009978_27 T23E18.2 [Arabidopsis thaliana] gi|14270247|emb|CAC39419.1| plastid thioredoxin [Arabidopsis thaliana] gi|89274141|gb|ABD65591.1| At1g76080 [Arabidopsis thaliana] gi|332197673|gb|AEE35794.1| thioredoxin-like protein CDSP32 [Arabidopsis thaliana]

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 206/305 (67%), Positives = 240/305 (78%), Gaps = 9/305 (2%)

Query: 50  MAVVTNFILKLPLSLSANPKFTPLRSPHSLF----SPPIFAKPQSLTKPKTSRTQLLITK 105
           MA V NF+ K   ++   P      +   +F    + P+F +      PK   + + I  
Sbjct: 1   MATVANFLAKPISTVVPRPSSAVASTSSFVFFNHKTNPLFRRKNL---PKRLFSAVKIKA 57

Query: 106 ATAAPGTKNAP--RDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVD 163
             A+PG    P   DE+V+K+HS EEFD AL+ AK+KLVV EFA S+S  S+KIYPFMV+
Sbjct: 58  GAASPGKVGTPPANDEKVQKIHSGEEFDVALKNAKSKLVVAEFATSKSDQSNKIYPFMVE 117

Query: 164 LSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQLMGDV 223
           LSR CNDV F+LVMGDES+KT+ELC REKI+KVPHFSFYKSMEKIHEEEGI PDQLMGDV
Sbjct: 118 LSRTCNDVVFLLVMGDESDKTRELCRREKIEKVPHFSFYKSMEKIHEEEGIEPDQLMGDV 177

Query: 224 LYYGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMA 283
           LYYGD+HSAVVQLH + DVEKLID+++   KLIVLDVGLKHCGPCVKVYPTV+KLSR M+
Sbjct: 178 LYYGDNHSAVVQLHGRPDVEKLIDENRTGGKLIVLDVGLKHCGPCVKVYPTVLKLSRSMS 237

Query: 284 GTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQG 343
            TVVFARMNGDENDSCM+FL+DMNV+EVPTFLFIRDG+IRGRYVGSGKGELIGEILRY G
Sbjct: 238 ETVVFARMNGDENDSCMEFLKDMNVIEVPTFLFIRDGEIRGRYVGSGKGELIGEILRYSG 297

Query: 344 VRVTY 348
           VRVTY
Sbjct: 298 VRVTY 302

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	348
TAIR|locus:2199803	302	CDSP32 "chloroplastic drought-	0.847	0.976	0.686	1.2e-104
UNIPROTKB|Q84NN4	301	CDSP32 "Thioredoxin-like prote	0.698	0.807	0.737	3.4e-93
TAIR|locus:2013169	119	ATTRX4 [Arabidopsis thaliana (	0.313	0.915	0.285	1.7e-09
UNIPROTKB|Q0D840	122	TRXH "Thioredoxin H1" [Oryza s	0.307	0.877	0.288	2.2e-09
TAIR|locus:2825451	118	TRX5 "thioredoxin H-type 5" [A	0.310	0.915	0.285	2.8e-09
MGI|MGI:98874	105	Txn1 "thioredoxin 1" [Mus musc	0.295	0.980	0.349	6.1e-09
UNIPROTKB|Q9BDJ3	105	TXN "Thioredoxin" [Callithrix	0.275	0.914	0.353	1e-08
FB|FBgn0029752	157	TrxT "Thioredoxin T" [Drosophi	0.307	0.681	0.285	1e-08
UNIPROTKB|O97508	105	TXN "Thioredoxin" [Equus cabal	0.275	0.914	0.353	1.3e-08
TAIR|locus:2159971	118	TRX3 "thioredoxin 3" [Arabidop	0.307	0.906	0.309	1.3e-08

TAIR|locus:2199803 CDSP32 "chloroplastic drought-induced stress protein of 32 kD" [Arabidopsis thaliana (taxid:3702)]

 Score = 1036 (369.7 bits), Expect = 1.2e-104, P = 1.2e-104
 Identities = 210/306 (68%), Positives = 246/306 (80%)

Query:    50 MAVVTNFILKLPLSLSANPKFTPLRSPHS-LF----SPPIFAKPQSLTKPKTSRTQLLIT 104
             MA V NF+ K P+S       + + S  S +F    + P+F + ++L  PK   + + I 
Sbjct:     1 MATVANFLAK-PISTVVPRPSSAVASTSSFVFFNHKTNPLFRR-KNL--PKRLFSAVKIK 56

Query:   105 KATAAPGTKNAP--RDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMV 162
                A+PG    P   DE+V+K+HS EEFD AL+ AK+KLVV EFA S+S  S+KIYPFMV
Sbjct:    57 AGAASPGKVGTPPANDEKVQKIHSGEEFDVALKNAKSKLVVAEFATSKSDQSNKIYPFMV 116

Query:   163 DLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQLMGD 222
             +LSR CNDV F+LVMGDES+KT+ELC REKI+KVPHFSFYKSMEKIHEEEGI PDQLMGD
Sbjct:   117 ELSRTCNDVVFLLVMGDESDKTRELCRREKIEKVPHFSFYKSMEKIHEEEGIEPDQLMGD 176

Query:   223 VLYYGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQM 282
             VLYYGD+HSAVVQLH + DVEKLID+++   KLIVLDVGLKHCGPCVKVYPTV+KLSR M
Sbjct:   177 VLYYGDNHSAVVQLHGRPDVEKLIDENRTGGKLIVLDVGLKHCGPCVKVYPTVLKLSRSM 236

Query:   283 AGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQ 342
             + TVVFARMNGDENDSCM+FL+DMNV+EVPTFLFIRDG+IRGRYVGSGKGELIGEILRY 
Sbjct:   237 SETVVFARMNGDENDSCMEFLKDMNVIEVPTFLFIRDGEIRGRYVGSGKGELIGEILRYS 296

Query:   343 GVRVTY 348
             GVRVTY
Sbjct:   297 GVRVTY 302

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006979 "response to oxidative stress" evidence=TAS

GO:0009414 "response to water deprivation" evidence=TAS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

UNIPROTKB|Q84NN4 CDSP32 "Thioredoxin-like protein CDSP32, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 928 (331.7 bits), Expect = 3.4e-93, P = 3.4e-93
 Identities = 180/244 (73%), Positives = 202/244 (82%)

Query:   105 KATAAPGTKNAPRDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDL 164
             + T   G      DERV +VHS EE D ALR AK +LVVVEFAAS S++SS+IYP MV+L
Sbjct:    58 ETTKKKGGGGGGGDERVVQVHSAEELDGALRAAKERLVVVEFAASHSVNSSRIYPCMVEL 117

Query:   165 SRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQLMGDVL 224
             SR C DV+F+LVMGDES+ T+ELC RE I  VPHF+FYK  EK+HEEEGIGPDQL GDVL
Sbjct:   118 SRTCGDVDFLLVMGDESDATRELCRREGITAVPHFTFYKGAEKVHEEEGIGPDQLAGDVL 177

Query:   225 YYGDSHSAVVQLHSKEDVEKLIDDHKVDQ-KLIVLDVGLKHCGPCVKVYPTVIKLSRQMA 283
             YYGD HSAVVQLHS+ DVE LI DH+ +  KL+VLDVGLK CGPCVKVYPTV+KLSR MA
Sbjct:   178 YYGDHHSAVVQLHSRADVESLISDHRGEGGKLVVLDVGLKRCGPCVKVYPTVVKLSRTMA 237

Query:   284 GTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQG 343
              T VFARMNGDENDSCM+FLRDM+VVEVPTFLFIRDG I GRYVGSG+GELIGEILRY G
Sbjct:   238 DTTVFARMNGDENDSCMEFLRDMDVVEVPTFLFIRDGDIVGRYVGSGRGELIGEILRYNG 297

Query:   344 VRVT 347
             V+VT
Sbjct:   298 VKVT 301

GO:0016671 "oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor" evidence=IDA

TAIR|locus:2013169 ATTRX4 [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 1.7e-09, P = 1.7e-09
 Identities = 32/112 (28%), Positives = 60/112 (53%)

Query:   233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
             V+  H+ +     +D  K   KLIV+D     C PC  + P    L+++   + +F +++
Sbjct:     8 VIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAIFFKVD 67

Query:   293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQGV 344
              DE  S     ++  V  +PTF+FI+ G++  + VG+ K +L  +I+++ GV
Sbjct:    68 VDELQSVA---KEFGVEAMPTFVFIKAGEVVDKLVGANKEDLQAKIVKHTGV 116

GO:0005737 "cytoplasm" evidence=ISM

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

GO:0016671 "oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor" evidence=IDA

UNIPROTKB|Q0D840 TRXH "Thioredoxin H1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 143 (55.4 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 32/111 (28%), Positives = 59/111 (53%)

Query:   233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
             V+  H+K++ +  +   K   K++++D     CGPC  + P   + +++  G V F +++
Sbjct:     8 VIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAV-FLKVD 66

Query:   293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQG 343
              DE     +     NV  +PTFLFI+DG    + VG+ K +L   I+++ G
Sbjct:    67 VDE---LKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVG 114

GO:0004857 "enzyme inhibitor activity" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0010497 "plasmodesmata-mediated intercellular transport" evidence=IDA

GO:0016671 "oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor" evidence=IDA;TAS

GO:0043086 "negative regulation of catalytic activity" evidence=IDA

TAIR|locus:2825451 TRX5 "thioredoxin H-type 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 2.8e-09, P = 2.8e-09
 Identities = 32/112 (28%), Positives = 62/112 (55%)

Query:   233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
             V+  H+ E   + + D    +KLIV+D     C PC  + P   +++++    VVF +++
Sbjct:     7 VIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTN-VVFFKID 65

Query:   293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQGV 344
              DE  +  Q   +  V  +PTF+F+++G I  R VG+ K E+  +++++ G+
Sbjct:    66 VDELQAVAQ---EFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKLMKHGGL 114

GO:0005737 "cytoplasm" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0010188 "response to microbial phytotoxin" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0016671 "oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor" evidence=IDA

MGI|MGI:98874 Txn1 "thioredoxin 1" [Mus musculus (taxid:10090)]

 Score = 139 (54.0 bits), Expect = 6.1e-09, P = 6.1e-09
 Identities = 37/106 (34%), Positives = 55/106 (51%)

Query:   121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180
             VK + S E F EAL  A +KLVVV+F+A+       I PF   L  + ++V F+ V  D+
Sbjct:     2 VKLIESKEAFQEALAAAGDKLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDD 61

Query:   181 SEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQLMGDVLYY 226
              +     CE   +K +P F FYK  +K+ E  G   ++L   +  Y
Sbjct:    62 CQDVAADCE---VKCMPTFQFYKKGQKVGEFSGANKEKLEASITEY 104

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0005576 "extracellular region" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005829 "cytosol" evidence=ISO;IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009314 "response to radiation" evidence=ISO

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0015037 "peptide disulfide oxidoreductase activity" evidence=IDA

GO:0019899 "enzyme binding" evidence=ISO

GO:0022900 "electron transport chain" evidence=IEA

GO:0030424 "axon" evidence=ISO

GO:0030425 "dendrite" evidence=ISO

GO:0033158 "regulation of protein import into nucleus, translocation" evidence=ISO

GO:0043025 "neuronal cell body" evidence=ISO

GO:0043388 "positive regulation of DNA binding" evidence=ISO

GO:0045454 "cell redox homeostasis" evidence=IDA

GO:0046826 "negative regulation of protein export from nucleus" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=ISO;IDA

UNIPROTKB|Q9BDJ3 TXN "Thioredoxin" [Callithrix jacchus (taxid:9483)]

 Score = 137 (53.3 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 35/99 (35%), Positives = 55/99 (55%)

Query:   121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180
             VK++ S + F EAL  A +KLVVV+F+A+       I PF   LS + ++V F+ V  D+
Sbjct:     2 VKQIDSKDAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDD 61

Query:   181 SEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
              +     CE   +K +P F F+K  +K+ E  G   ++L
Sbjct:    62 CQDVASECE---VKCMPTFQFFKKGQKVGEFSGANKEKL 97

GO:0009314 "response to radiation" evidence=ISS

GO:0033158 "regulation of protein import into nucleus, translocation" evidence=ISS

GO:0043388 "positive regulation of DNA binding" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=ISS

FB|FBgn0029752 TrxT "Thioredoxin T" [Drosophila melanogaster (taxid:7227)]

 Score = 137 (53.3 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 32/112 (28%), Positives = 61/112 (54%)

Query:   233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
             V  + +K+D+++ +     + KL+V+D     CGPC  + P + +L+ + +  VV  ++N
Sbjct:     2 VYPVRNKDDLDQQLI--LAEDKLVVIDFYADWCGPCKIIAPKLDELAHEYSDRVVVLKVN 59

Query:   293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQGV 344
              DEN+       + NV  +PTF+FI+ G +   +VG    +L   + ++ GV
Sbjct:    60 VDENEDITV---EYNVNSMPTFVFIKGGNVLELFVGCNSDKLAKLMEKHAGV 108

GO:0015036 "disulfide oxidoreductase activity" evidence=ISS;NAS

GO:0005634 "nucleus" evidence=NAS

GO:0000806 "Y chromosome" evidence=IDA

GO:0016491 "oxidoreductase activity" evidence=NAS

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0006457 "protein folding" evidence=IDA

GO:0006974 "response to DNA damage stimulus" evidence=IMP

UNIPROTKB|O97508 TXN "Thioredoxin" [Equus caballus (taxid:9796)]

 Score = 136 (52.9 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 35/99 (35%), Positives = 53/99 (53%)

Query:   121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180
             VK++ S   F EAL  A  KLVVV+F+A+       I PF   LS + ++V F+ V  D+
Sbjct:     2 VKQIESKSAFQEALNSAGEKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDD 61

Query:   181 SEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
              +     CE   +K +P F F+K  +K+ E  G   ++L
Sbjct:    62 CQDVAAECE---VKCMPTFQFFKKGQKVDEFSGANKEKL 97

GO:0009314 "response to radiation" evidence=ISS

GO:0033158 "regulation of protein import into nucleus, translocation" evidence=ISS

GO:0043388 "positive regulation of DNA binding" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=ISS

TAIR|locus:2159971 TRX3 "thioredoxin 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 35/113 (30%), Positives = 65/113 (57%)

Query:   233 VVQLHSKED-VEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARM 291
             V+  H+ ED  EKL   ++  +KLIV+D     C PC  + P    L+++    VVF ++
Sbjct:     7 VIACHTVEDWTEKLKAANE-SKKLIVIDFTATWCPPCRFIAPVFADLAKKHLD-VVFFKV 64

Query:   292 NGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQGV 344
             + DE ++  +   +  V  +PTF+F+++G+I+   VG+ K E+I  + +++ V
Sbjct:    65 DVDELNTVAE---EFKVQAMPTFIFMKEGEIKETVVGAAKEEIIANLEKHKTV 114

GO:0005737 "cytoplasm" evidence=ISM

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0042542 "response to hydrogen peroxide" evidence=IGI

GO:0005739 "mitochondrion" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0010188 "response to microbial phytotoxin" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0006457 "protein folding" evidence=IDA

GO:0009408 "response to heat" evidence=IMP

GO:0010286 "heat acclimation" evidence=IMP

GO:0016671 "oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor" evidence=IDA

GO:0051259 "protein oligomerization" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009734 "auxin mediated signaling pathway" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SGS4	CDSP_ARATH	No assigned EC number	0.6754	0.8505	0.9801	yes	no
Q84NN4	CDSP_ORYSJ	No assigned EC number	0.728	0.6810	0.7873	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	348
cd02985	103	cd02985, TRX_CDSP32, TRX family, chloroplastic dro	1e-55
cd02985	103	cd02985, TRX_CDSP32, TRX family, chloroplastic dro	2e-54
cd02947	93	cd02947, TRX_family, TRX family; composed of two g	1e-15
cd02947	93	cd02947, TRX_family, TRX family; composed of two g	3e-12
pfam00085	104	pfam00085, Thioredoxin, Thioredoxin	4e-11
TIGR01068	101	TIGR01068, thioredoxin, thioredoxin	9e-09
COG0526	127	COG0526, TrxA, Thiol-disulfide isomerase and thior	1e-07
PTZ00051	98	PTZ00051, PTZ00051, thioredoxin; Provisional	5e-06
PTZ00051	98	PTZ00051, PTZ00051, thioredoxin; Provisional	1e-05
cd02966	116	cd02966, TlpA_like_family, TlpA-like family; compo	2e-05
cd02984	97	cd02984, TRX_PICOT, TRX domain, PICOT (for PKC-int	2e-05
cd02961	101	cd02961, PDI_a_family, Protein Disulfide Isomerase	4e-05
cd02984	97	cd02984, TRX_PICOT, TRX domain, PICOT (for PKC-int	6e-05
pfam13098	105	pfam13098, Thioredoxin_2, Thioredoxin-like domain	6e-05
PRK09381	109	PRK09381, trxA, thioredoxin; Provisional	7e-05
COG3118	304	COG3118, COG3118, Thioredoxin domain-containing pr	1e-04
cd01659	69	cd01659, TRX_superfamily, Thioredoxin (TRX) superf	2e-04
cd02956	96	cd02956, ybbN, ybbN protein family; ybbN is a hypo	0.001
PTZ00102	477	PTZ00102, PTZ00102, disulphide isomerase; Provisio	0.003
cd02948	102	cd02948, TRX_NDPK, TRX domain, TRX and NDP-kinase	0.003

>gnl|CDD|239283 cd02985, TRX_CDSP32, TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

 Score =  176 bits (448), Expect = 1e-55
 Identities = 49/104 (47%), Positives = 66/104 (63%), Gaps = 2/104 (1%)

Query: 240 EDVEKLIDDHKVDQ-KLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDS 298
             VE+L +  K  + +L+VL+  LKH GP VK+YPT++KLSR     VVF  +NGDENDS
Sbjct: 1   HSVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDS 59

Query: 299 CMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQ 342
            M+  R   ++EVP FLF +DG+      G G  ELIG++L Y 
Sbjct: 60  TMELCRREKIIEVPHFLFYKDGEKIHEEEGIGPDELIGDVLYYG 103

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form. Length = 103

>gnl|CDD|239283 cd02985, TRX_CDSP32, TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

 Score =  173 bits (440), Expect = 2e-54
 Identities = 72/103 (69%), Positives = 82/103 (79%)

Query: 125 HSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKT 184
           HS+EE DEAL+ AK +LVV+EFA   S  S KIYP MV LSR CNDV F+LV GDE++ T
Sbjct: 1   HSVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDST 60

Query: 185 KELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQLMGDVLYYG 227
            ELC REKI +VPHF FYK  EKIHEEEGIGPD+L+GDVLYYG
Sbjct: 61  MELCRREKIIEVPHFLFYKDGEKIHEEEGIGPDELIGDVLYYG 103

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form. Length = 103

>gnl|CDD|239245 cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

 Score = 71.4 bits (176), Expect = 1e-15
 Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 8/100 (8%)

Query: 240 EDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSC 299
           E+ E+LI   K     +V+D     CGPC  + P + +L+ +    V F +++ DEN   
Sbjct: 1   EEFEELIKSAK----PVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDEN--- 52

Query: 300 MQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEIL 339
            +   +  V  +PTFLF ++G+   R VG+   E + E L
Sbjct: 53  PELAEEYGVRSIPTFLFFKNGKEVDRVVGADPKEELEEFL 92

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins. Length = 93

>gnl|CDD|239245 cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

 Score = 61.8 bits (151), Expect = 3e-12
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 5/91 (5%)

Query: 128 EEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKEL 187
           EEF+E +     K VVV+F A        I P + +L+ +   V+F+ V  DE+    EL
Sbjct: 1   EEFEELI--KSAKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDEN---PEL 55

Query: 188 CEREKIKKVPHFSFYKSMEKIHEEEGIGPDQ 218
            E   ++ +P F F+K+ +++    G  P +
Sbjct: 56  AEEYGVRSIPTFLFFKNGKEVDRVVGADPKE 86

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins. Length = 93

>gnl|CDD|215704 pfam00085, Thioredoxin, Thioredoxin

 Score = 58.8 bits (143), Expect = 4e-11
 Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 8/97 (8%)

Query: 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
           VV++ + E+ ++ +       K +++D     CGPC  + P   KL+++    V FA+++
Sbjct: 1   VVKVLTDENFDEEVAKSD---KPVLVDFYAPWCGPCKALAPEYEKLAQEYKDDVKFAKVD 57

Query: 293 GDENDS-CMQFLRDMNVVEVPTFLFIRDGQIRGRYVG 328
            DEN     ++     V   PT  F ++G+    YVG
Sbjct: 58  ADENPDLASEY----GVRGFPTIKFFKNGKKVSDYVG 90

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Some members with only the active site are not separated from the noise. Length = 104

>gnl|CDD|200072 TIGR01068, thioredoxin, thioredoxin

 Score = 51.9 bits (125), Expect = 9e-09
 Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 5/76 (6%)

Query: 254 KLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN-DSCMQFLRDMNVVEVP 312
           K +++D     CGPC  + P + +L+++  G V F ++N DEN D   ++     +  +P
Sbjct: 15  KPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKY----GIRSIP 70

Query: 313 TFLFIRDGQIRGRYVG 328
           T L  ++G+   R VG
Sbjct: 71  TLLLFKNGKEVDRSVG 86

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by This model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin [Energy metabolism, Electron transport]. Length = 101

>gnl|CDD|223600 COG0526, TrxA, Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

 Score = 49.9 bits (118), Expect = 1e-07
 Identities = 21/90 (23%), Positives = 40/90 (44%)

Query: 239 KEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDS 298
           +E     +   ++  K +++D     C PC    P + +L+ +  G V    +N D+ + 
Sbjct: 18  EELDGAPLSLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENP 77

Query: 299 CMQFLRDMNVVEVPTFLFIRDGQIRGRYVG 328
            +     + V  +PT L  +DG+   R VG
Sbjct: 78  DLAAEFGVAVRSIPTLLLFKDGKEVDRLVG 107

Length = 127

>gnl|CDD|173347 PTZ00051, PTZ00051, thioredoxin; Provisional

 Score = 44.1 bits (104), Expect = 5e-06
 Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 5/84 (5%)

Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180
           V  V S  EF+  L  ++N+LV+V+F A       +I PF  + S++   + F+ V  DE
Sbjct: 2   VHIVTSQAEFESTL--SQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDE 59

Query: 181 SEKTKELCEREKIKKVPHFSFYKS 204
                E+ E+E I  +P F  +K+
Sbjct: 60  ---LSEVAEKENITSMPTFKVFKN 80

Length = 98

>gnl|CDD|173347 PTZ00051, PTZ00051, thioredoxin; Provisional

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 20/97 (20%), Positives = 47/97 (48%), Gaps = 8/97 (8%)

Query: 238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND 297
           S+ + E  +  +++    +++D   + CGPC ++ P   + S++    +VF +++ DE  
Sbjct: 7   SQAEFESTLSQNEL----VIVDFYAEWCGPCKRIAPFYEECSKEYT-KMVFVKVDVDELS 61

Query: 298 SCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGEL 334
              +     N+  +PTF   ++G +    +G+    L
Sbjct: 62  EVAE---KENITSMPTFKVFKNGSVVDTLLGANDEAL 95

Length = 98

>gnl|CDD|239264 cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 22/86 (25%)

Query: 265 CGPCVKVYPTVIKLSRQMAGT-VVFARMNGDEN--------------------DSCMQFL 303
           C PC    P +  L+++     V    +N D++                    D   +  
Sbjct: 31  CPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELA 90

Query: 304 RDMNVVEVPTFLFI-RDGQIRGRYVG 328
           +   V  +PT   I RDG+IR R+VG
Sbjct: 91  KAYGVRGLPTTFLIDRDGRIRARHVG 116

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. Length = 116

>gnl|CDD|239282 cd02984, TRX_PICOT, TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 4/95 (4%)

Query: 126 SIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN-DVEFILVMGDESEKT 184
           S EEF+E L+   +KL+V+ F A  +    ++     +L+++    V F+ +   E+E+ 
Sbjct: 1   SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSI---EAEEL 57

Query: 185 KELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
            E+ E+ +I  VP F F+++   +    G  P +L
Sbjct: 58  PEISEKFEITAVPTFVFFRNGTIVDRVSGADPKEL 92

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Length = 97

>gnl|CDD|239259 cd02961, PDI_a_family, Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

 Score = 41.4 bits (98), Expect = 4e-05
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 7/59 (11%)

Query: 265 CGPCVKVYPTVIKLSRQMA--GTVVFARMNGDEN-DSCMQFLRDMNVVEVPTFLFIRDG 320
           CG C  + P   KL++++   G VV A+++   N D C ++     V   PT     +G
Sbjct: 27  CGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEY----GVRGYPTIKLFPNG 81

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies are necessary for the isomerase function. The different types of PDIs may show different substrate specificities and tissue-specific expression, or may be induced by stress. PDIs are in their reduced form at steady state and are oxidized to the active form by Ero1, which is localized in the ER through ERp44. Some members of this family also contain a DnaJ domain in addition to the redox active a domains; examples are ERdj5 and Pfj2. Also included in the family is the redox inactive N-terminal TRX-like domain of ERp29. Length = 101

>gnl|CDD|239282 cd02984, TRX_PICOT, TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

 Score = 41.1 bits (97), Expect = 6e-05
 Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 7/98 (7%)

Query: 238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN- 296
           S+E+ E+L+       KL+VL        PC ++     +L+++   +V+F  +  +E  
Sbjct: 1   SEEEFEELLKSDA--SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELP 58

Query: 297 DSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGEL 334
           +   +F     +  VPTF+F R+G I  R  G+   EL
Sbjct: 59  EISEKF----EITAVPTFVFFRNGTIVDRVSGADPKEL 92

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Length = 97

>gnl|CDD|221921 pfam13098, Thioredoxin_2, Thioredoxin-like domain

 Score = 41.6 bits (98), Expect = 6e-05
 Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 14/89 (15%)

Query: 254 KLIVLDVGLKHCGPCVKVYPTVIK---LSRQMAGTVVFARMNGDEND----------SCM 300
           K +++      C  C K++  ++K   +   +    V   +N D++           S  
Sbjct: 6   KPVLVVFTDPDCPYCKKLHKELLKDPDVQEYLKDNFVVIYVNVDDSKEVTDFDGETLSEK 65

Query: 301 QFLRDMNVVEVPTFLFI-RDGQIRGRYVG 328
           +  R   V   PT +F+  DG+   R  G
Sbjct: 66  ELARKYGVRGTPTIVFLDGDGKEVARLPG 94

Length = 105

>gnl|CDD|181812 PRK09381, trxA, thioredoxin; Provisional

 Score = 41.2 bits (96), Expect = 7e-05
 Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 4/81 (4%)

Query: 255 LIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTF 314
            I++D   + CGPC  + P + +++ +  G +  A++N D+N           +  +PT 
Sbjct: 23  AILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAP---KYGIRGIPTL 79

Query: 315 LFIRDGQIRGRYVGS-GKGEL 334
           L  ++G++    VG+  KG+L
Sbjct: 80  LLFKNGEVAATKVGALSKGQL 100

Length = 109

>gnl|CDD|225660 COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 249 HKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN-DSCMQFLRDMN 307
               +  +++D     CGPC ++ PT+ KL+ +  G    A++N D       QF     
Sbjct: 39  QSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQF----G 94

Query: 308 VVEVPTFLFIRDGQ 321
           V  +PT    +DGQ
Sbjct: 95  VQSIPTVYAFKDGQ 108

Length = 304

>gnl|CDD|238829 cd01659, TRX_superfamily, Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

 Score = 39.2 bits (91), Expect = 2e-04
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLF 316
           ++      C  C  + P V+     +   V F  ++ DE+ +  + L+   V  VPT + 
Sbjct: 1   LVLFYAPWCPFCQALRP-VLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVV 59

Query: 317 IRDG 320
              G
Sbjct: 60  FGPG 63

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others. Length = 69

>gnl|CDD|239254 cd02956, ybbN, ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

 Score = 37.6 bits (88), Expect = 0.001
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 3/70 (4%)

Query: 252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEV 311
            Q  +V+D       P  ++ P + +L+ +  G  V A++N D      Q      V  +
Sbjct: 11  TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFG---VQAL 67

Query: 312 PTFLFIRDGQ 321
           PT      GQ
Sbjct: 68  PTVYLFAAGQ 77

Its gene has been sequenced from several gammaproteobacteria and actinobacteria. Length = 96

>gnl|CDD|240266 PTZ00102, PTZ00102, disulphide isomerase; Provisional

 Score = 39.0 bits (91), Expect = 0.003
 Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 5/69 (7%)

Query: 254 KLIVLDVGLKHCGPCVKVYPTVIKLSRQMA--GTVVFARMNGDENDSCMQFLRDMNVVEV 311
           K ++L++    CG C  + P   +L  +     +++ A+MNG  N++ ++   + +    
Sbjct: 376 KDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLE---EFSWSAF 432

Query: 312 PTFLFIRDG 320
           PT LF++ G
Sbjct: 433 PTILFVKAG 441

Length = 477

>gnl|CDD|239246 cd02948, TRX_NDPK, TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

 Score = 36.2 bits (84), Expect = 0.003
 Identities = 26/97 (26%), Positives = 51/97 (52%), Gaps = 9/97 (9%)

Query: 234 VQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVV-FARMN 292
           V+++++E+ E+L+ +    + L V+DV  + CGPC  V     K+  ++   ++ FA   
Sbjct: 2   VEINNQEEWEELLSN----KGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAE 57

Query: 293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS 329
            D  D+  ++       E PTFLF ++G++     G+
Sbjct: 58  ADTIDTLKRY---RGKCE-PTFLFYKNGELVAVIRGA 90

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which is also associated with microtubular structures. The other members of this group are hypothetical insect proteins containing a TRX domain and outer arm dynein light chains (14 and 16kDa) of Chlamydomonas reinhardtii. Using standard assays, the fusion proteins have shown no TRX enzymatic activity. Length = 102

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	348
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	99.96
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	99.93
PTZ00102	477	disulphide isomerase; Provisional	99.92
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	99.91
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	99.9
PTZ00062	204	glutaredoxin; Provisional	99.9
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	99.9
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	99.89
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	99.89
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	99.89
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	99.88
KOG0908	288	consensus Thioredoxin-like protein [Posttranslatio	99.86
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	99.85
PHA02278	103	thioredoxin-like protein	99.84
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	99.83
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	99.83
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	99.83
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	99.82
PHA02278	103	thioredoxin-like protein	99.82
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	99.82
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	99.81
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	99.81
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	99.81
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	99.8
PTZ00051	98	thioredoxin; Provisional	99.8
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	99.79
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	99.79
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	99.79
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	99.79
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	99.79
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	99.78
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	99.78
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	99.78
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	99.78
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	99.77
COG3118	304	Thioredoxin domain-containing protein [Posttransla	99.77
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	99.77
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	99.77
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	99.77
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	99.76
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	99.76
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	99.76
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	99.75
PRK10996	139	thioredoxin 2; Provisional	99.75
COG3118	304	Thioredoxin domain-containing protein [Posttransla	99.75
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	99.75
PRK09381	109	trxA thioredoxin; Provisional	99.75
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	99.74
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	99.74
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	99.74
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	99.74
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	99.73
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	99.73
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	99.72
PTZ00051	98	thioredoxin; Provisional	99.71
PRK09381	109	trxA thioredoxin; Provisional	99.71
PRK10996	139	thioredoxin 2; Provisional	99.71
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	99.71
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	99.71
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	99.71
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	99.71
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	99.7
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	99.7
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	99.7
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	99.7
KOG0908	288	consensus Thioredoxin-like protein [Posttranslatio	99.7
KOG4277	468	consensus Uncharacterized conserved protein, conta	99.7
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	99.69
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	99.69
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	99.69
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	99.68
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	99.68
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	99.68
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	99.67
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	99.67
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	99.67
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	99.66
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	99.66
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	99.66
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	99.66
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	99.66
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	99.65
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	99.65
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	99.64
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	99.64
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	99.64
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	99.64
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	99.64
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	99.63
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	99.62
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	99.62
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	99.62
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	99.61
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	99.61
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	99.6
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	99.6
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	99.6
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	99.59
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	99.58
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	99.58
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	99.57
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	99.57
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	99.57
PTZ00062	204	glutaredoxin; Provisional	99.57
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	99.55
KOG0912	375	consensus Thiol-disulfide isomerase and thioredoxi	99.55
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	99.55
cd02947	93	TRX_family TRX family; composed of two groups: Gro	99.55
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	99.54
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	99.53
cd02947	93	TRX_family TRX family; composed of two groups: Gro	99.52
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	99.52
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	99.51
PLN02309	457	5'-adenylylsulfate reductase	99.5
KOG0911	227	consensus Glutaredoxin-related protein [Posttransl	99.48
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	99.47
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	99.47
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	99.47
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	99.46
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	99.45
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	99.45
PTZ00102	477	disulphide isomerase; Provisional	99.44
KOG1731	606	consensus FAD-dependent sulfhydryl oxidase/quiesci	99.44
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	99.43
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	99.42
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	99.42
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	99.42
PHA02125	75	thioredoxin-like protein	99.42
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	99.42
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	99.41
PLN02309	457	5'-adenylylsulfate reductase	99.41
KOG4277	468	consensus Uncharacterized conserved protein, conta	99.38
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	99.37
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	99.36
PHA02125	75	thioredoxin-like protein	99.36
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	99.34
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	99.34
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	99.31
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	99.29
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	99.29
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	99.29
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	99.29
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	99.28
KOG0912	375	consensus Thiol-disulfide isomerase and thioredoxi	99.28
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	99.26
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	99.26
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	99.26
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	99.26
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	99.26
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	99.26
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	99.25
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	99.25
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	99.25
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	99.24
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	99.23
KOG1672	211	consensus ATP binding protein [Posttranslational m	99.22
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	99.22
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	99.21
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	99.2
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	99.2
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	99.2
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	99.16
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	99.16
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	99.16
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	99.15
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	99.14
PRK13728	181	conjugal transfer protein TrbB; Provisional	99.14
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	99.14
PTZ00056	199	glutathione peroxidase; Provisional	99.13
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	99.13
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	99.13
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	99.12
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	99.12
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	99.12
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.1
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	99.09
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	99.09
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	99.07
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	99.07
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	99.07
KOG0914	265	consensus Thioredoxin-like protein [Posttranslatio	99.06
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	99.05
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	99.05
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	99.04
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	99.02
smart00594	122	UAS UAS domain.	99.01
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	99.01
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	99.01
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	99.01
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.0
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	99.0
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	98.99
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	98.99
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	98.98
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	98.97
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	98.95
PTZ00056	199	glutathione peroxidase; Provisional	98.94
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	98.93
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	98.93
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	98.92
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	98.92
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	98.91
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.9
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	98.89
PRK13728	181	conjugal transfer protein TrbB; Provisional	98.88
PLN02412	167	probable glutathione peroxidase	98.87
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	98.87
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.84
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	98.82
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	98.81
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	98.81
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	98.8
KOG0914	265	consensus Thioredoxin-like protein [Posttranslatio	98.79
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	98.77
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	98.74
PTZ00256	183	glutathione peroxidase; Provisional	98.73
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	98.72
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	98.71
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	98.71
KOG2501	157	consensus Thioredoxin, nucleoredoxin and related p	98.69
KOG1731	606	consensus FAD-dependent sulfhydryl oxidase/quiesci	98.69
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	98.69
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	98.67
KOG2501	157	consensus Thioredoxin, nucleoredoxin and related p	98.65
KOG1672	211	consensus ATP binding protein [Posttranslational m	98.65
COG2143	182	Thioredoxin-related protein [Posttranslational mod	98.64
smart00594	122	UAS UAS domain.	98.63
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	98.61
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	98.59
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	98.59
PF01216	383	Calsequestrin: Calsequestrin; InterPro: IPR001393	98.58
cd02991	116	UAS_ETEA UAS family, ETEA subfamily; composed of p	98.57
KOG3425	128	consensus Uncharacterized conserved protein [Funct	98.53
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	98.51
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	98.49
PRK10606	183	btuE putative glutathione peroxidase; Provisional	98.49
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	98.49
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	98.48
PTZ00256	183	glutathione peroxidase; Provisional	98.47
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	98.47
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	98.45
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	98.45
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	98.44
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	98.43
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	98.41
PLN02412	167	probable glutathione peroxidase	98.41
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	98.38
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	98.37
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	98.37
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	98.36
KOG3414	142	consensus Component of the U4/U6.U5 snRNP/mitosis	98.36
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	98.35
PF03190	163	Thioredox_DsbH: Protein of unknown function, DUF25	98.33
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	98.32
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	98.32
PRK10606	183	btuE putative glutathione peroxidase; Provisional	98.32
KOG3414	142	consensus Component of the U4/U6.U5 snRNP/mitosis	98.31
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	98.3
PF13728	215	TraF: F plasmid transfer operon protein	98.3
PRK11200	85	grxA glutaredoxin 1; Provisional	98.29
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	98.27
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	98.27
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	98.27
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	98.26
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	98.25
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	98.25
PF02966	133	DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th	98.24
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	98.23
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	98.22
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	98.2
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	98.19
PRK11200	85	grxA glutaredoxin 1; Provisional	98.18
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	98.16
KOG0911	227	consensus Glutaredoxin-related protein [Posttransl	98.15
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	98.14
KOG3425	128	consensus Uncharacterized conserved protein [Funct	98.14
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	98.13
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	98.12
PF13728	215	TraF: F plasmid transfer operon protein	98.11
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	98.09
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	98.04
PRK13190	202	putative peroxiredoxin; Provisional	98.02
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	98.01
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	98.0
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	98.0
PRK15000	200	peroxidase; Provisional	97.99
PF02966	133	DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th	97.95
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	97.95
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	97.94
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	97.92
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	97.91
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	97.9
cd02991	116	UAS_ETEA UAS family, ETEA subfamily; composed of p	97.88
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	97.87
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	97.86
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	97.84
KOG3171	273	consensus Conserved phosducin-like protein [Signal	97.83
PRK10329	81	glutaredoxin-like protein; Provisional	97.82
COG2143	182	Thioredoxin-related protein [Posttranslational mod	97.82
PF03190	163	Thioredox_DsbH: Protein of unknown function, DUF25	97.78
KOG3170	240	consensus Conserved phosducin-like protein [Signal	97.77
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	97.76
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	97.76
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	97.76
KOG3171	273	consensus Conserved phosducin-like protein [Signal	97.76
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	97.76
PRK13191	215	putative peroxiredoxin; Provisional	97.74
KOG0913	248	consensus Thiol-disulfide isomerase and thioredoxi	97.74
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	97.73
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	97.72
PTZ00137	261	2-Cys peroxiredoxin; Provisional	97.7
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	97.69
PTZ00253	199	tryparedoxin peroxidase; Provisional	97.69
PRK13599	215	putative peroxiredoxin; Provisional	97.63
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	97.63
PRK13189	222	peroxiredoxin; Provisional	97.62
cd02983	130	P5_C P5 family, C-terminal redox inactive TRX-like	97.6
PRK10329	81	glutaredoxin-like protein; Provisional	97.6
KOG0913	248	consensus Thiol-disulfide isomerase and thioredoxi	97.59
PF01216	383	Calsequestrin: Calsequestrin; InterPro: IPR001393	97.58
PHA03050	108	glutaredoxin; Provisional	97.57
PF07449	107	HyaE: Hydrogenase-1 expression protein HyaE; Inter	97.54
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	97.52
PRK15000	200	peroxidase; Provisional	97.51
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	97.5
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	97.48
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	97.48
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	97.47
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.45
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.44
cd02981	97	PDI_b_family Protein Disulfide Isomerase (PDIb) fa	97.44
PTZ00253	199	tryparedoxin peroxidase; Provisional	97.44
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	97.44
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	97.4
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	97.37
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	97.35
PRK13190	202	putative peroxiredoxin; Provisional	97.31
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	97.28
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	97.24
PF07449	107	HyaE: Hydrogenase-1 expression protein HyaE; Inter	97.24
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	97.22
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	97.22
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	97.2
cd03072	111	PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second	97.2
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	97.18
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	97.18
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	97.16
PTZ00137	261	2-Cys peroxiredoxin; Provisional	97.15
PHA03050	108	glutaredoxin; Provisional	97.13
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	97.12
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.09
PRK13599	215	putative peroxiredoxin; Provisional	97.08
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	97.08
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	97.07
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	97.03
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	97.02
PF05768	81	DUF836: Glutaredoxin-like domain (DUF836); InterPr	96.98
PRK13191	215	putative peroxiredoxin; Provisional	96.97
PRK10638	83	glutaredoxin 3; Provisional	96.95
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	96.94
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	96.94
KOG3170	240	consensus Conserved phosducin-like protein [Signal	96.93
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	96.93
PRK10824	115	glutaredoxin-4; Provisional	96.91
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	96.89
PRK10638	83	glutaredoxin 3; Provisional	96.85
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	96.79
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	96.79
cd03073	111	PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 s	96.74
cd03019	178	DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m	96.72
KOG2603	331	consensus Oligosaccharyltransferase, gamma subunit	96.71
PRK13189	222	peroxiredoxin; Provisional	96.7
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	96.69
cd02981	97	PDI_b_family Protein Disulfide Isomerase (PDIb) fa	96.56
cd03019	178	DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m	96.53
PRK10824	115	glutaredoxin-4; Provisional	96.42
PRK10954	207	periplasmic protein disulfide isomerase I; Provisi	96.39
COG1225	157	Bcp Peroxiredoxin [Posttranslational modification,	96.38
PRK10954	207	periplasmic protein disulfide isomerase I; Provisi	96.35
cd03067	112	PDI_b_PDIR_N PDIb family, PDIR subfamily, N-termin	96.34
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	96.26
cd03067	112	PDI_b_PDIR_N PDIb family, PDIR subfamily, N-termin	96.23
PRK12759	410	bifunctional gluaredoxin/ribonucleoside-diphosphat	96.22
cd03066	102	PDI_b_Calsequestrin_middle PDIb family, Calsequest	96.19
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	96.02
COG1225	157	Bcp Peroxiredoxin [Posttranslational modification,	96.0
COG1331	667	Highly conserved protein containing a thioredoxin	95.89
PF07912	126	ERp29_N: ERp29, N-terminal domain; InterPro: IPR01	95.8
cd03013	155	PRX5_like Peroxiredoxin (PRX) family, PRX5-like su	95.67
PRK12759	410	bifunctional gluaredoxin/ribonucleoside-diphosphat	95.64
cd03069	104	PDI_b_ERp57 PDIb family, ERp57 subfamily, first re	95.43
KOG1752	104	consensus Glutaredoxin and related proteins [Postt	95.33
PF00837	237	T4_deiodinase: Iodothyronine deiodinase; InterPro:	95.31
PF05768	81	DUF836: Glutaredoxin-like domain (DUF836); InterPr	95.25
KOG2603	331	consensus Oligosaccharyltransferase, gamma subunit	95.14
cd02983	130	P5_C P5 family, C-terminal redox inactive TRX-like	94.64
cd03072	111	PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second	94.62
KOG1752	104	consensus Glutaredoxin and related proteins [Postt	94.56
cd02990	136	UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1	94.51
PF07912	126	ERp29_N: ERp29, N-terminal domain; InterPro: IPR01	94.38
cd03013	155	PRX5_like Peroxiredoxin (PRX) family, PRX5-like su	94.06
COG0386	162	BtuE Glutathione peroxidase [Posttranslational mod	93.94
COG1999	207	Uncharacterized protein SCO1/SenC/PrrC, involved i	93.66
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	93.64
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	93.23
COG0278	105	Glutaredoxin-related protein [Posttranslational mo	93.1
PF13743	176	Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.	92.7
cd03073	111	PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 s	92.29
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	92.0
KOG2792	280	consensus Putative cytochrome C oxidase assembly p	91.71
cd03068	107	PDI_b_ERp72 PDIb family, ERp72 subfamily, first re	91.39
cd03041	77	GST_N_2GST_N GST_N family, 2 repeats of the N-term	91.06
cd02974	94	AhpF_NTD_N Alkyl hydroperoxide reductase F subunit	90.57
cd03040	77	GST_N_mPGES2 GST_N family; microsomal Prostaglandi	90.03
cd02978	72	KaiB_like KaiB-like family; composed of the circad	89.88
cd03066	102	PDI_b_Calsequestrin_middle PDIb family, Calsequest	89.19
cd02974	94	AhpF_NTD_N Alkyl hydroperoxide reductase F subunit	89.03
cd03035	105	ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb s	88.63
PF13417	75	GST_N_3: Glutathione S-transferase, N-terminal dom	88.48
PF04592	238	SelP_N: Selenoprotein P, N terminal region; InterP	88.41
KOG2640	319	consensus Thioredoxin [Function unknown]	88.29
PF00837	237	T4_deiodinase: Iodothyronine deiodinase; InterPro:	88.21
cd03069	104	PDI_b_ERp57 PDIb family, ERp57 subfamily, first re	88.18
KOG2507	506	consensus Ubiquitin regulatory protein UBXD2, cont	88.17
cd03060	71	GST_N_Omega_like GST_N family, Omega-like subfamil	88.06
PF09673	113	TrbC_Ftype: Type-F conjugative transfer system pil	87.8
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	87.64
cd03060	71	GST_N_Omega_like GST_N family, Omega-like subfamil	87.63
cd03041	77	GST_N_2GST_N GST_N family, 2 repeats of the N-term	87.62
cd03036	111	ArsC_like Arsenate Reductase (ArsC) family, unknow	87.17
PRK09301	103	circadian clock protein KaiB; Provisional	86.53
cd02977	105	ArsC_family Arsenate Reductase (ArsC) family; comp	86.34
TIGR02742	130	TrbC_Ftype type-F conjugative transfer system pili	86.27
COG4545	85	Glutaredoxin-related protein [Posttranslational mo	86.22
cd02978	72	KaiB_like KaiB-like family; composed of the circad	86.17
cd03036	111	ArsC_like Arsenate Reductase (ArsC) family, unknow	85.64
PF02630	174	SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam	85.56
TIGR02654	87	circ_KaiB circadian clock protein KaiB. Members of	85.48
KOG1651	171	consensus Glutathione peroxidase [Posttranslationa	85.46
PHA03075	123	glutaredoxin-like protein; Provisional	85.4
cd03035	105	ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb s	85.34
PF01323	193	DSBA: DSBA-like thioredoxin domain; InterPro: IPR0	85.11
PF02630	174	SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam	84.35
PRK01655	131	spxA transcriptional regulator Spx; Reviewed	84.07
PRK12559	131	transcriptional regulator Spx; Provisional	83.05
cd03037	71	GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) sub	82.6
COG0386	162	BtuE Glutathione peroxidase [Posttranslational mod	82.56
cd02977	105	ArsC_family Arsenate Reductase (ArsC) family; comp	81.47
cd03068	107	PDI_b_ERp72 PDIb family, ERp72 subfamily, first re	81.03
TIGR02654	87	circ_KaiB circadian clock protein KaiB. Members of	80.96
PHA03075	123	glutaredoxin-like protein; Provisional	80.66
PF06491	136	Disulph_isomer: Disulphide isomerase; InterPro: IP	80.56

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=99.96  E-value=5.2e-28  Score=216.32  Aligned_cols=198  Identities=17%  Similarity=0.183  Sum_probs=146.2

Q ss_pred             HHHHH-HHhcCCCEEEEEEeC---CCCHHHHhhhhHHHHHHHHcCCcE--EEEEeCCCchhHHHHHHHcCcCCCCeEEEe
Q 018973          129 EFDEA-LRLAKNKLVVVEFAA---SRSLDSSKIYPFMVDLSRQCNDVE--FILVMGDESEKTKELCEREKIKKVPHFSFY  202 (348)
Q Consensus       129 ~f~~~-l~~~~~k~vvV~F~a---~wC~~C~~~~p~l~~la~~~~~v~--f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~  202 (348)
                      ++.+. ++..++...++.|++   +||++|+.+.|.+++++++|+++.  ++.+|.|+   .++++++|+|+++||+++|
T Consensus         8 ~~~~~~~~~~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~---~~~l~~~~~V~~~Pt~~~f   84 (215)
T TIGR02187         8 ILKELFLKELKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPE---DKEEAEKYGVERVPTTIIL   84 (215)
T ss_pred             HHHHHHHHhcCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcc---cHHHHHHcCCCccCEEEEE
Confidence            33444 444456666777888   999999999999999999997754  55555556   5679999999999999999


Q ss_pred             ecccccc-ccccCC-CCcccccccccCCCccceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHH
Q 018973          203 KSMEKIH-EEEGIG-PDQLMGDVLYYGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSR  280 (348)
Q Consensus       203 ~~g~~v~-~~~G~~-~~~l~~~v~~~~~~~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~  280 (348)
                      ++|+.+. ++.|.. .+++...+............+ + ++..+.+...  ++...++.||++||++|+.+.+.+.+++.
T Consensus        85 ~~g~~~~~~~~G~~~~~~l~~~i~~~~~~~~~~~~L-~-~~~~~~l~~~--~~pv~I~~F~a~~C~~C~~~~~~l~~l~~  160 (215)
T TIGR02187        85 EEGKDGGIRYTGIPAGYEFAALIEDIVRVSQGEPGL-S-EKTVELLQSL--DEPVRIEVFVTPTCPYCPYAVLMAHKFAL  160 (215)
T ss_pred             eCCeeeEEEEeecCCHHHHHHHHHHHHHhcCCCCCC-C-HHHHHHHHhc--CCCcEEEEEECCCCCCcHHHHHHHHHHHH
Confidence            9999984 888843 333332222111000011111 2 2223333332  34556666999999999999999999998


Q ss_pred             HhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCC-ChHHHHHHHHH
Q 018973          281 QMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS-GKGELIGEILR  340 (348)
Q Consensus       281 ~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~  340 (348)
                      +. +++.+..+|.+++++   ++++|+|.++||++++++|+.   +.|. +.++|.++|.+
T Consensus       161 ~~-~~i~~~~vD~~~~~~---~~~~~~V~~vPtl~i~~~~~~---~~G~~~~~~l~~~l~~  214 (215)
T TIGR02187       161 AN-DKILGEMIEANENPD---LAEKYGVMSVPKIVINKGVEE---FVGAYPEEQFLEYILS  214 (215)
T ss_pred             hc-CceEEEEEeCCCCHH---HHHHhCCccCCEEEEecCCEE---EECCCCHHHHHHHHHh
Confidence            86 469999999999887   999999999999999988863   7888 88999998875

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1e-25  Score=218.04  Aligned_cols=84  Identities=18%  Similarity=0.326  Sum_probs=75.1

Q ss_pred             CCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC----CcEEEEEeCCCchhHHHHHHHcCc
Q 018973          118 DERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN----DVEFILVMGDESEKTKELCEREKI  193 (348)
Q Consensus       118 ~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~----~v~f~~vd~d~~~~~~~l~~~~~V  193 (348)
                      +..|..+ +.++|++.+.  .+..++|.||||||++|+++.|.+++.++...    .+..++||+.+   ..++|.+|+|
T Consensus        24 ~~~Vl~L-t~dnf~~~i~--~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~---~~~~~~~y~v   97 (493)
T KOG0190|consen   24 EEDVLVL-TKDNFKETIN--GHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATE---ESDLASKYEV   97 (493)
T ss_pred             ccceEEE-ecccHHHHhc--cCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecch---hhhhHhhhcC
Confidence            3345555 8999999998  78999999999999999999999999998763    48999999999   5789999999


Q ss_pred             CCCCeEEEeecccc
Q 018973          194 KKVPHFSFYKSMEK  207 (348)
Q Consensus       194 ~~~Pt~~~~~~g~~  207 (348)
                      +++||+.+|+||+.
T Consensus        98 ~gyPTlkiFrnG~~  111 (493)
T KOG0190|consen   98 RGYPTLKIFRNGRS  111 (493)
T ss_pred             CCCCeEEEEecCCc
Confidence            99999999999985

>PTZ00102 disulphide isomerase; Provisional

Probab=99.92  E-value=3.7e-24  Score=213.15  Aligned_cols=90  Identities=22%  Similarity=0.418  Sum_probs=80.4

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC--cEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEE-EEEeC
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG--TVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIR-GRYVG  328 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v-~~~~G  328 (348)
                      .+++++|+||++||++|+.+.|.|+++++.+++  .+.++.+|++.++.   .+++++++++||+++|++|+.+ .++.|
T Consensus       374 ~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~---~~~~~~v~~~Pt~~~~~~~~~~~~~~~G  450 (477)
T PTZ00102        374 SDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANET---PLEEFSWSAFPTILFVKAGERTPIPYEG  450 (477)
T ss_pred             CCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCcc---chhcCCCcccCeEEEEECCCcceeEecC
Confidence            478999999999999999999999999988864  58999999999887   8899999999999999877654 57899


Q ss_pred             C-ChHHHHHHHHHHhCC
Q 018973          329 S-GKGELIGEILRYQGV  344 (348)
Q Consensus       329 ~-~~~~L~~~l~~~~~~  344 (348)
                      . +.++|.++|+++...
T Consensus       451 ~~~~~~l~~~i~~~~~~  467 (477)
T PTZ00102        451 ERTVEGFKEFVNKHATN  467 (477)
T ss_pred             cCCHHHHHHHHHHcCCC
Confidence            8 999999999998754

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=6.1e-24  Score=205.89  Aligned_cols=207  Identities=20%  Similarity=0.305  Sum_probs=162.6

Q ss_pred             HHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeecc
Q 018973          127 IEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPHFSFYKSM  205 (348)
Q Consensus       127 ~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g  205 (348)
                      ...+...+.  .+++++|+||++||++|+.+.|.|.++++.+.+ +.+..||+++   ++++|++|+|+++||+.+|.+|
T Consensus        37 ~~~~~~~~~--~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~---~~~~~~~y~i~gfPtl~~f~~~  111 (383)
T KOG0191|consen   37 DSFFDFLLK--DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDE---HKDLCEKYGIQGFPTLKVFRPG  111 (383)
T ss_pred             cccHHHhhc--cCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchh---hHHHHHhcCCccCcEEEEEcCC
Confidence            333334444  689999999999999999999999999999988 8999999999   7779999999999999999999


Q ss_pred             cccccccc-CCCCccccccccc-----CCCccc-eeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHH
Q 018973          206 EKIHEEEG-IGPDQLMGDVLYY-----GDSHSA-VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKL  278 (348)
Q Consensus       206 ~~v~~~~G-~~~~~l~~~v~~~-----~~~~~~-v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~l  278 (348)
                      .....+.| .+.+.+.......     ...... +..+ ...++...+.+   .+..++|.||+|||++|+.+.|.+.++
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l-~~~~~~~~~~~---~~~~~lv~f~aPwc~~ck~l~~~~~~~  187 (383)
T KOG0191|consen  112 KKPIDYSGPRNAESLAEFLIKELEPSVKKLVEGEVFEL-TKDNFDETVKD---SDADWLVEFYAPWCGHCKKLAPEWEKL  187 (383)
T ss_pred             CceeeccCcccHHHHHHHHHHhhccccccccCCceEEc-cccchhhhhhc---cCcceEEEEeccccHHhhhcChHHHHH
Confidence            44555555 2233333322211     111122 4443 44566666665   378899999999999999999999999


Q ss_pred             HHHhC--CcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeE-EEEEeCC-ChHHHHHHHHHHhCCC
Q 018973          279 SRQMA--GTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQI-RGRYVGS-GKGELIGEILRYQGVR  345 (348)
Q Consensus       279 a~~~~--~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~-v~~~~G~-~~~~L~~~l~~~~~~~  345 (348)
                      +..+.  +.+.++.+|++....   ++++++|.++||+++|++|.. ...+.|. +.+.+..++....+.+
T Consensus       188 a~~~~~~~~v~~~~~d~~~~~~---~~~~~~v~~~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~  255 (383)
T KOG0191|consen  188 AKLLKSKENVELGKIDATVHKS---LASRLEVRGYPTLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERRN  255 (383)
T ss_pred             HHHhccCcceEEEeeccchHHH---HhhhhcccCCceEEEecCCCcccccccccccHHHHHHHHHhhcCCC
Confidence            99884  569999999985555   999999999999999998887 6677777 9999999999887653

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=99.90  E-value=7.2e-24  Score=167.58  Aligned_cols=102  Identities=70%  Similarity=1.091  Sum_probs=93.6

Q ss_pred             cCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeec
Q 018973          125 HSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKS  204 (348)
Q Consensus       125 ~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~  204 (348)
                      +|.++|++.+.++++++|||+|||+||+||+.+.|.|++++++++++.|++||+|+.++..+++++|+|+++||+++|++
T Consensus         1 ~~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~   80 (103)
T cd02985           1 HSVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKD   80 (103)
T ss_pred             CCHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeC
Confidence            57899999999878999999999999999999999999999999889999999998765568999999999999999999


Q ss_pred             cccccccccCCCCccccccccc
Q 018973          205 MEKIHEEEGIGPDQLMGDVLYY  226 (348)
Q Consensus       205 g~~v~~~~G~~~~~l~~~v~~~  226 (348)
                      |+.+.++.|..+++|...+.++
T Consensus        81 G~~v~~~~G~~~~~l~~~~~~~  102 (103)
T cd02985          81 GEKIHEEEGIGPDELIGDVLYY  102 (103)
T ss_pred             CeEEEEEeCCCHHHHHHHHHhc
Confidence            9999999999988888766554

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>PTZ00062 glutaredoxin; Provisional

Probab=99.90  E-value=6.2e-23  Score=180.12  Aligned_cols=171  Identities=18%  Similarity=0.199  Sum_probs=128.2

Q ss_pred             cCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeec
Q 018973          125 HSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKS  204 (348)
Q Consensus       125 ~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~  204 (348)
                      .+.++|++.+++ ....+|++|+|+||++|+.+.|.|.+|+++|+++.|+.||.|           |+|.++|||++|++
T Consensus         4 ~~~ee~~~~i~~-~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d-----------~~V~~vPtfv~~~~   71 (204)
T PTZ00062          4 IKKEEKDKLIES-NTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA-----------DANNEYGVFEFYQN   71 (204)
T ss_pred             CCHHHHHHHHhc-CCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc-----------cCcccceEEEEEEC
Confidence            478999999873 237789999999999999999999999999999999999966           89999999999999


Q ss_pred             cccccccccCCCCcccccccccCCCccceeecCChhhHHHHhhhcccCCcEEEEEEe----CCCChhhhhhhhHHHHHHH
Q 018973          205 MEKIHEEEGIGPDQLMGDVLYYGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVG----LKHCGPCVKVYPTVIKLSR  280 (348)
Q Consensus       205 g~~v~~~~G~~~~~l~~~v~~~~~~~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~----a~wC~~C~~~~p~l~~la~  280 (348)
                      |+.++++.|+++..+...+..+.....       .++..+.+++.. +.++++|+--    .|+|++|+++...|.+.  
T Consensus        72 g~~i~r~~G~~~~~~~~~~~~~~~~~~-------~~~~~~~v~~li-~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~--  141 (204)
T PTZ00062         72 SQLINSLEGCNTSTLVSFIRGWAQKGS-------SEDTVEKIERLI-RNHKILLFMKGSKTFPFCRFSNAVVNMLNSS--  141 (204)
T ss_pred             CEEEeeeeCCCHHHHHHHHHHHcCCCC-------HHHHHHHHHHHH-hcCCEEEEEccCCCCCCChhHHHHHHHHHHc--
Confidence            999999999999999887776544322       122333333322 2344444333    37999999987666642  


Q ss_pred             HhCCcEEEEEEECCCchhHHHHHHhC-CCCccceEEEEeCCeEE
Q 018973          281 QMAGTVVFARMNGDENDSCMQFLRDM-NVVEVPTFLFIRDGQIR  323 (348)
Q Consensus       281 ~~~~~v~~~~vd~~~~~~~~~l~~~~-~V~~~PTl~~~~~G~~v  323 (348)
                          ++.|..+|+++.++.++..+++ |...+|.+.+  +|+.+
T Consensus       142 ----~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI--~G~~I  179 (204)
T PTZ00062        142 ----GVKYETYNIFEDPDLREELKVYSNWPTYPQLYV--NGELI  179 (204)
T ss_pred             ----CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE--CCEEE
Confidence                3677888998777655444443 5556666554  78765

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=99.90  E-value=1.9e-22  Score=199.62  Aligned_cols=90  Identities=22%  Similarity=0.371  Sum_probs=78.5

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC---cEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEE--EEE
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG---TVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIR--GRY  326 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~---~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v--~~~  326 (348)
                      .++.++|+||++||++|+.+.|.+.++++.+.+   ++.|+++|++.++    +.. ++|.++||+++|++|...  ..+
T Consensus       363 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~----~~~-~~i~~~Pt~~~~~~~~~~~~~~~  437 (462)
T TIGR01130       363 ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND----VPP-FEVEGFPTIKFVPAGKKSEPVPY  437 (462)
T ss_pred             CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc----cCC-CCccccCEEEEEeCCCCcCceEe
Confidence            478899999999999999999999999999976   6999999999876    444 999999999999988653  567


Q ss_pred             eCC-ChHHHHHHHHHHhCCCC
Q 018973          327 VGS-GKGELIGEILRYQGVRV  346 (348)
Q Consensus       327 ~G~-~~~~L~~~l~~~~~~~~  346 (348)
                      .|. +.+.|.++|.++...++
T Consensus       438 ~g~~~~~~l~~~l~~~~~~~~  458 (462)
T TIGR01130       438 DGDRTLEDFSKFIAKHATFPL  458 (462)
T ss_pred             cCcCCHHHHHHHHHhcCCCCC
Confidence            787 99999999998876544

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=1.8e-23  Score=164.97  Aligned_cols=94  Identities=32%  Similarity=0.446  Sum_probs=81.4

Q ss_pred             cCHHHHHHHHH--hcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEe
Q 018973          125 HSIEEFDEALR--LAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFY  202 (348)
Q Consensus       125 ~s~~~f~~~l~--~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~  202 (348)
                      .+.++++..+.  +.+++++||+|||+|||||+.+.|.+++|+.+|+++.|++||+|+   ..+++++++|+.+|||+||
T Consensus         5 ~~~~~~~~~~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde---~~~~~~~~~V~~~PTf~f~   81 (106)
T KOG0907|consen    5 ETVSDLDLVLSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE---LEEVAKEFNVKAMPTFVFY   81 (106)
T ss_pred             EehhhHHHHHHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc---CHhHHHhcCceEeeEEEEE
Confidence            34444444433  334799999999999999999999999999999999999999999   5679999999999999999


Q ss_pred             eccccccccccCCCCcccc
Q 018973          203 KSMEKIHEEEGIGPDQLMG  221 (348)
Q Consensus       203 ~~g~~v~~~~G~~~~~l~~  221 (348)
                      ++|+.+.++.|++.+.+..
T Consensus        82 k~g~~~~~~vGa~~~~l~~  100 (106)
T KOG0907|consen   82 KGGEEVDEVVGANKAELEK  100 (106)
T ss_pred             ECCEEEEEEecCCHHHHHH
Confidence            9999999999998776553

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=4.8e-23  Score=168.76  Aligned_cols=98  Identities=28%  Similarity=0.333  Sum_probs=88.2

Q ss_pred             CCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCC
Q 018973          119 ERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVP  197 (348)
Q Consensus       119 ~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~P  197 (348)
                      .....+.+.++|++.+.+ .+.||+|+|||+||+||+.+.|.|++++.+|.| ++|++||+|+   ..+++.+|+|+++|
T Consensus        42 ~~~~~~~s~~~~~~~Vi~-S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~---~~ela~~Y~I~avP  117 (150)
T KOG0910|consen   42 ATLFNVQSDSEFDDKVIN-SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDE---HPELAEDYEISAVP  117 (150)
T ss_pred             cccccccCHHHHHHHHHc-cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEcccc---ccchHhhcceeeee
Confidence            456677899999999875 699999999999999999999999999999988 9999999999   55699999999999


Q ss_pred             eEEEeeccccccccccCCCC-ccc
Q 018973          198 HFSFYKSMEKIHEEEGIGPD-QLM  220 (348)
Q Consensus       198 t~~~~~~g~~v~~~~G~~~~-~l~  220 (348)
                      |+++|+||++++++.|+.+. +|.
T Consensus       118 tvlvfknGe~~d~~vG~~~~~~l~  141 (150)
T KOG0910|consen  118 TVLVFKNGEKVDRFVGAVPKEQLR  141 (150)
T ss_pred             EEEEEECCEEeeeecccCCHHHHH
Confidence            99999999999999996544 444

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=99.89  E-value=2.1e-22  Score=160.24  Aligned_cols=92  Identities=15%  Similarity=0.209  Sum_probs=83.2

Q ss_pred             CHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeec
Q 018973          126 SIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPHFSFYKS  204 (348)
Q Consensus       126 s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~  204 (348)
                      +.++|++.+....+++|||+|||+||+||+.|.|.|+++++++++ +.|++||+|+   .++++++|+|+++||+++|++
T Consensus         1 ~~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~---~~~la~~~~V~~iPTf~~fk~   77 (114)
T cd02954           1 SGWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDE---VPDFNKMYELYDPPTVMFFFR   77 (114)
T ss_pred             CHHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCC---CHHHHHHcCCCCCCEEEEEEC
Confidence            468899999866789999999999999999999999999999998 7999999999   556999999999999999999


Q ss_pred             ccccccccc-CCCCccc
Q 018973          205 MEKIHEEEG-IGPDQLM  220 (348)
Q Consensus       205 g~~v~~~~G-~~~~~l~  220 (348)
                      |+.+.+..| .+.+.+.
T Consensus        78 G~~v~~~~G~~~~~~~~   94 (114)
T cd02954          78 NKHMKIDLGTGNNNKIN   94 (114)
T ss_pred             CEEEEEEcCCCCCceEE
Confidence            999999988 4455555

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=3.7e-22  Score=163.52  Aligned_cols=107  Identities=22%  Similarity=0.480  Sum_probs=100.6

Q ss_pred             cceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCc
Q 018973          231 SAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVE  310 (348)
Q Consensus       231 ~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~  310 (348)
                      ...+...+.++|++.+.+   ++.||+|+|||+||+||+.+.|.|+++..++.++++|+++|+|++.+   ++.+|+|..
T Consensus        42 ~~~~~~~s~~~~~~~Vi~---S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~e---la~~Y~I~a  115 (150)
T KOG0910|consen   42 ATLFNVQSDSEFDDKVIN---SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPE---LAEDYEISA  115 (150)
T ss_pred             cccccccCHHHHHHHHHc---cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccc---hHhhcceee
Confidence            356677789999999887   48999999999999999999999999999999999999999999998   999999999


Q ss_pred             cceEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973          311 VPTFLFIRDGQIRGRYVGS-GKGELIGEILRYQG  343 (348)
Q Consensus       311 ~PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~  343 (348)
                      +||+++|++|+.+.++.|. +.+.|..+|+++++
T Consensus       116 vPtvlvfknGe~~d~~vG~~~~~~l~~~i~k~l~  149 (150)
T KOG0910|consen  116 VPTVLVFKNGEKVDRFVGAVPKEQLRSLIKKFLK  149 (150)
T ss_pred             eeEEEEEECCEEeeeecccCCHHHHHHHHHHHhc
Confidence            9999999999999999999 99999999999875

>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=2.3e-22  Score=175.72  Aligned_cols=105  Identities=30%  Similarity=0.409  Sum_probs=98.4

Q ss_pred             CceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeE
Q 018973          120 RVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHF  199 (348)
Q Consensus       120 ~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~  199 (348)
                      .|..|.+..+|+..+..++.++|+|+|+|+|||||++++|.+..|+.+|++.+|++||+|+|..   .+..+||.++|||
T Consensus         2 ~Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~---taa~~gV~amPTF   78 (288)
T KOG0908|consen    2 PVIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRG---TAATNGVNAMPTF   78 (288)
T ss_pred             CeEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhc---hhhhcCcccCceE
Confidence            5788999999999999989999999999999999999999999999999999999999999654   8899999999999


Q ss_pred             EEeeccccccccccCCCCcccccccccC
Q 018973          200 SFYKSMEKIHEEEGIGPDQLMGDVLYYG  227 (348)
Q Consensus       200 ~~~~~g~~v~~~~G~~~~~l~~~v~~~~  227 (348)
                      ++|+||..++.+.|++...|+..+.++.
T Consensus        79 iff~ng~kid~~qGAd~~gLe~kv~~~~  106 (288)
T KOG0908|consen   79 IFFRNGVKIDQIQGADASGLEEKVAKYA  106 (288)
T ss_pred             EEEecCeEeeeecCCCHHHHHHHHHHHh
Confidence            9999999999999999999888776653

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=99.85  E-value=2.9e-20  Score=146.91  Aligned_cols=102  Identities=47%  Similarity=0.826  Sum_probs=91.4

Q ss_pred             CChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEE
Q 018973          237 HSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLF  316 (348)
Q Consensus       237 ~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~  316 (348)
                      ++.+++++.+.+.  .+++++|+||++||++|+.+.|.|.++++++ +++.|+.||+++++...+++++|+|.++||+++
T Consensus         1 ~~~~~~~~~i~~~--~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~   77 (103)
T cd02985           1 HSVEELDEALKKA--KGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEVPHFLF   77 (103)
T ss_pred             CCHHHHHHHHHHc--CCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEE
Confidence            3578899998764  5899999999999999999999999999999 569999999998865566999999999999999


Q ss_pred             EeCCeEEEEEeCCChHHHHHHHHHH
Q 018973          317 IRDGQIRGRYVGSGKGELIGEILRY  341 (348)
Q Consensus       317 ~~~G~~v~~~~G~~~~~L~~~l~~~  341 (348)
                      |++|+++.++.|.++++|.+.+..+
T Consensus        78 ~~~G~~v~~~~G~~~~~l~~~~~~~  102 (103)
T cd02985          78 YKDGEKIHEEEGIGPDELIGDVLYY  102 (103)
T ss_pred             EeCCeEEEEEeCCCHHHHHHHHHhc
Confidence            9999999999999889998887653

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>PHA02278 thioredoxin-like protein

Probab=99.84  E-value=1.3e-20  Score=148.52  Aligned_cols=88  Identities=14%  Similarity=0.154  Sum_probs=77.9

Q ss_pred             cCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCch-hHHHHHHHcCcCCCCeEEEe
Q 018973          125 HSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESE-KTKELCEREKIKKVPHFSFY  202 (348)
Q Consensus       125 ~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~-~~~~l~~~~~V~~~Pt~~~~  202 (348)
                      .+.++|++.+.  ++++|||+|||+|||||+.+.|.++++++++.. +.|++||+|..+ +..+++++|+|+++|||++|
T Consensus         2 ~~~~~~~~~i~--~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~f   79 (103)
T PHA02278          2 NSLVDLNTAIR--QKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGY   79 (103)
T ss_pred             CCHHHHHHHHh--CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEE
Confidence            47889999996  789999999999999999999999999988544 789999999742 12469999999999999999


Q ss_pred             eccccccccccC
Q 018973          203 KSMEKIHEEEGI  214 (348)
Q Consensus       203 ~~g~~v~~~~G~  214 (348)
                      ++|+.+++..|.
T Consensus        80 k~G~~v~~~~G~   91 (103)
T PHA02278         80 KDGQLVKKYEDQ   91 (103)
T ss_pred             ECCEEEEEEeCC
Confidence            999999999994

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=99.83  E-value=4.8e-20  Score=145.57  Aligned_cols=85  Identities=18%  Similarity=0.257  Sum_probs=77.6

Q ss_pred             CHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeec
Q 018973          126 SIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPHFSFYKS  204 (348)
Q Consensus       126 s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~  204 (348)
                      +.++|++.+.++++++|||+|+|+||+||+.+.|.|++++++|++ +.|++||+|+   .++++++|+|+++||++||++
T Consensus         1 ~~~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDe---v~dva~~y~I~amPtfvffkn   77 (114)
T cd02986           1 SKKEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDK---VPVYTQYFDISYIPSTIFFFN   77 (114)
T ss_pred             CHHHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccc---cHHHHHhcCceeCcEEEEEEC
Confidence            357899999988899999999999999999999999999999999 9999999999   666999999999999999999


Q ss_pred             ccccccccc
Q 018973          205 MEKIHEEEG  213 (348)
Q Consensus       205 g~~v~~~~G  213 (348)
                      |+.+.--.|
T Consensus        78 gkh~~~d~g   86 (114)
T cd02986          78 GQHMKVDYG   86 (114)
T ss_pred             CcEEEEecC
Confidence            987754444

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=99.83  E-value=4.3e-20  Score=146.95  Aligned_cols=98  Identities=19%  Similarity=0.276  Sum_probs=85.6

Q ss_pred             hhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEe
Q 018973          239 KEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIR  318 (348)
Q Consensus       239 ~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~  318 (348)
                      .+++++.+...  .+++++|+|||+||+||+.+.|.|.+++.++++.+.|++||++++++   ++++|+|.++||+++|+
T Consensus         2 ~~~~~~~i~~~--~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~---la~~~~V~~iPTf~~fk   76 (114)
T cd02954           2 GWAVDQAILSE--EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPD---FNKMYELYDPPTVMFFF   76 (114)
T ss_pred             HHHHHHHHhcc--CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHH---HHHHcCCCCCCEEEEEE
Confidence            46777777643  57899999999999999999999999999998878999999999998   99999999999999999


Q ss_pred             CCeEEEEEeCC-----------ChHHHHHHHHHH
Q 018973          319 DGQIRGRYVGS-----------GKGELIGEILRY  341 (348)
Q Consensus       319 ~G~~v~~~~G~-----------~~~~L~~~l~~~  341 (348)
                      +|+.+.+..|.           +++.+++.+..+
T Consensus        77 ~G~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~  110 (114)
T cd02954          77 RNKHMKIDLGTGNNNKINWVFEDKQEFIDIIETI  110 (114)
T ss_pred             CCEEEEEEcCCCCCceEEEecCcHHHHHHHHHHH
Confidence            99999998884           356666666544

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=7e-20  Score=144.57  Aligned_cols=99  Identities=30%  Similarity=0.560  Sum_probs=86.3

Q ss_pred             hhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEe
Q 018973          239 KEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIR  318 (348)
Q Consensus       239 ~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~  318 (348)
                      .++++.........+++++|+|||+||+||+.+.|.+.+|+.+|++ +.|+++|+|+.   ++++++++|..+|||++|+
T Consensus         7 ~~~~~~~~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde~---~~~~~~~~V~~~PTf~f~k   82 (106)
T KOG0907|consen    7 VSDLDLVLSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDEL---EEVAKEFNVKAMPTFVFYK   82 (106)
T ss_pred             hhhHHHHHHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEecccC---HhHHHhcCceEeeEEEEEE
Confidence            3444444444444579999999999999999999999999999987 99999999994   4599999999999999999


Q ss_pred             CCeEEEEEeCCChHHHHHHHHHH
Q 018973          319 DGQIRGRYVGSGKGELIGEILRY  341 (348)
Q Consensus       319 ~G~~v~~~~G~~~~~L~~~l~~~  341 (348)
                      +|+.+.++.|.+.++|.+.+.++
T Consensus        83 ~g~~~~~~vGa~~~~l~~~i~~~  105 (106)
T KOG0907|consen   83 GGEEVDEVVGANKAELEKKIAKH  105 (106)
T ss_pred             CCEEEEEEecCCHHHHHHHHHhc
Confidence            99999999999888888888764

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=99.82  E-value=5.8e-20  Score=147.61  Aligned_cols=93  Identities=19%  Similarity=0.293  Sum_probs=86.7

Q ss_pred             CCCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCC
Q 018973          117 RDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKV  196 (348)
Q Consensus       117 ~~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~  196 (348)
                      +.+.+..|.+.++|.+.+.  .+++|+|+||++||++|+.+.|.|++++++|+++.|++||+++   ..+++++|+|+.+
T Consensus         2 ~~g~v~~i~~~~~~~~~i~--~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~---~~~l~~~~~v~~v   76 (113)
T cd02989           2 GHGKYREVSDEKEFFEIVK--SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEK---APFLVEKLNIKVL   76 (113)
T ss_pred             CCCCeEEeCCHHHHHHHHh--CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEccc---CHHHHHHCCCccC
Confidence            4578999999999999997  5789999999999999999999999999999999999999999   5569999999999


Q ss_pred             CeEEEeeccccccccccC
Q 018973          197 PHFSFYKSMEKIHEEEGI  214 (348)
Q Consensus       197 Pt~~~~~~g~~v~~~~G~  214 (348)
                      ||+++|++|+.++++.|.
T Consensus        77 Pt~l~fk~G~~v~~~~g~   94 (113)
T cd02989          77 PTVILFKNGKTVDRIVGF   94 (113)
T ss_pred             CEEEEEECCEEEEEEECc
Confidence            999999999999998885

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>PHA02278 thioredoxin-like protein

Probab=99.82  E-value=1.5e-19  Score=142.42  Aligned_cols=97  Identities=16%  Similarity=0.266  Sum_probs=83.0

Q ss_pred             CChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch-hHHHHHHhCCCCccceEE
Q 018973          237 HSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND-SCMQFLRDMNVVEVPTFL  315 (348)
Q Consensus       237 ~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~-~~~~l~~~~~V~~~PTl~  315 (348)
                      ++.++|++.+.    .+++++|+|||+||+||+.+.|.++++++++..++.|+++|+++++ +..+++++|+|.++||++
T Consensus         2 ~~~~~~~~~i~----~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i   77 (103)
T PHA02278          2 NSLVDLNTAIR----QKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLI   77 (103)
T ss_pred             CCHHHHHHHHh----CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEE
Confidence            35678888885    4799999999999999999999999999886555789999999762 112399999999999999


Q ss_pred             EEeCCeEEEEEeCC-ChHHHHHH
Q 018973          316 FIRDGQIRGRYVGS-GKGELIGE  337 (348)
Q Consensus       316 ~~~~G~~v~~~~G~-~~~~L~~~  337 (348)
                      +|++|+.++++.|. +.++|.++
T Consensus        78 ~fk~G~~v~~~~G~~~~~~l~~~  100 (103)
T PHA02278         78 GYKDGQLVKKYEDQVTPMQLQEL  100 (103)
T ss_pred             EEECCEEEEEEeCCCCHHHHHhh
Confidence            99999999999998 88777654

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=99.82  E-value=5.5e-20  Score=151.88  Aligned_cols=92  Identities=15%  Similarity=0.194  Sum_probs=82.2

Q ss_pred             CceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCe
Q 018973          120 RVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPH  198 (348)
Q Consensus       120 ~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt  198 (348)
                      .+.++.|.++|++.+....+++|||+|||+||+||+.+.|.|+++++++++ +.|++||+|+   .++++++|+|+..||
T Consensus         4 ~l~~l~s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe---~~dla~~y~I~~~~t   80 (142)
T PLN00410          4 LLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITE---VPDFNTMYELYDPCT   80 (142)
T ss_pred             hHhhhCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCC---CHHHHHHcCccCCCc
Confidence            356778999999999877899999999999999999999999999999998 8889999999   566999999997766


Q ss_pred             EE-Eeeccc-cccccccC
Q 018973          199 FS-FYKSME-KIHEEEGI  214 (348)
Q Consensus       199 ~~-~~~~g~-~v~~~~G~  214 (348)
                      ++ ||++|+ .+.+..|.
T Consensus        81 ~~~ffk~g~~~vd~~tG~   98 (142)
T PLN00410         81 VMFFFRNKHIMIDLGTGN   98 (142)
T ss_pred             EEEEEECCeEEEEEeccc
Confidence            55 999998 78877773

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=99.81  E-value=6.9e-20  Score=144.51  Aligned_cols=93  Identities=22%  Similarity=0.294  Sum_probs=83.1

Q ss_pred             eEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCCCchhHHHHHHHcCcCCCCeE
Q 018973          122 KKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGDESEKTKELCEREKIKKVPHF  199 (348)
Q Consensus       122 ~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~  199 (348)
                      ++|.|.++|++++.  .+++|+|+|||+||++|+.+.|.|+++++++++  +.|+++|+|. +   +++++|+|+++||+
T Consensus         2 ~~i~~~~~~~~~i~--~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~-~---~~~~~~~v~~~Pt~   75 (102)
T cd02948           2 VEINNQEEWEELLS--NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADT-I---DTLKRYRGKCEPTF   75 (102)
T ss_pred             eEccCHHHHHHHHc--cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCC-H---HHHHHcCCCcCcEE
Confidence            45789999999986  689999999999999999999999999999974  7899999993 3   48999999999999


Q ss_pred             EEeeccccccccccCCCCccc
Q 018973          200 SFYKSMEKIHEEEGIGPDQLM  220 (348)
Q Consensus       200 ~~~~~g~~v~~~~G~~~~~l~  220 (348)
                      ++|++|+.+.+..|.+.+.+.
T Consensus        76 ~~~~~g~~~~~~~G~~~~~~~   96 (102)
T cd02948          76 LFYKNGELVAVIRGANAPLLN   96 (102)
T ss_pred             EEEECCEEEEEEecCChHHHH
Confidence            999999999999997766654

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=99.81  E-value=1e-19  Score=146.17  Aligned_cols=93  Identities=23%  Similarity=0.295  Sum_probs=83.9

Q ss_pred             CCCceEecCHHHHHHHHHhcC-CCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCC
Q 018973          118 DERVKKVHSIEEFDEALRLAK-NKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKV  196 (348)
Q Consensus       118 ~~~v~~v~s~~~f~~~l~~~~-~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~  196 (348)
                      .+.+.++.+ ++|.+.+.+.+ +++|+|+||++||++|+.+.|.|++++++|+++.|++||+++   . +++++|+|+.+
T Consensus         3 ~g~v~~i~~-~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~---~-~l~~~~~i~~~   77 (113)
T cd02957           3 FGEVREISS-KEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEK---A-FLVNYLDIKVL   77 (113)
T ss_pred             CceEEEEcH-HHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchh---h-HHHHhcCCCcC
Confidence            467888855 99999987543 589999999999999999999999999999999999999998   4 69999999999


Q ss_pred             CeEEEeeccccccccccCC
Q 018973          197 PHFSFYKSMEKIHEEEGIG  215 (348)
Q Consensus       197 Pt~~~~~~g~~v~~~~G~~  215 (348)
                      ||+++|++|+.++++.|..
T Consensus        78 Pt~~~f~~G~~v~~~~G~~   96 (113)
T cd02957          78 PTLLVYKNGELIDNIVGFE   96 (113)
T ss_pred             CEEEEEECCEEEEEEecHH
Confidence            9999999999999998843

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=99.81  E-value=1.5e-19  Score=144.82  Aligned_cols=93  Identities=15%  Similarity=0.139  Sum_probs=80.0

Q ss_pred             CCCceEecCHHHHHHHHH-hcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHH-HHcCcC
Q 018973          118 DERVKKVHSIEEFDEALR-LAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELC-EREKIK  194 (348)
Q Consensus       118 ~~~v~~v~s~~~f~~~l~-~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~-~~~~V~  194 (348)
                      .+.|.++ +.++|++++. ..++++++|+|||+||++|+.+.|.|+++++++.+ +.|++||+|+   ..++| ++|+|+
T Consensus         8 ~~~v~~l-~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~---~~~l~~~~~~I~   83 (113)
T cd03006           8 RSPVLDF-YKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWW---PQGKCRKQKHFF   83 (113)
T ss_pred             CCCeEEe-chhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCC---ChHHHHHhcCCc
Confidence            3456776 7888988732 23789999999999999999999999999999987 8999999998   45588 589999


Q ss_pred             CCCeEEEeeccccccccccC
Q 018973          195 KVPHFSFYKSMEKIHEEEGI  214 (348)
Q Consensus       195 ~~Pt~~~~~~g~~v~~~~G~  214 (348)
                      ++||+++|++|+...++.|.
T Consensus        84 ~~PTl~lf~~g~~~~~y~G~  103 (113)
T cd03006          84 YFPVIHLYYRSRGPIEYKGP  103 (113)
T ss_pred             ccCEEEEEECCccceEEeCC
Confidence            99999999999988777774

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.80  E-value=2.6e-19  Score=140.76  Aligned_cols=89  Identities=15%  Similarity=0.291  Sum_probs=80.1

Q ss_pred             CceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCe
Q 018973          120 RVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPH  198 (348)
Q Consensus       120 ~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt  198 (348)
                      .++++ +.++|++.+.  .+++++|+|||+||++|+.+.|.|+++++++++ +.|++||+|+   .+++|++|+|+.+||
T Consensus         2 ~~~~l-~~~~f~~~v~--~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~---~~~~~~~~~v~~~Pt   75 (101)
T cd03003           2 EIVTL-DRGDFDAAVN--SGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGD---DRMLCRSQGVNSYPS   75 (101)
T ss_pred             CeEEc-CHhhHHHHhc--CCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCc---cHHHHHHcCCCccCE
Confidence            35566 7889999986  569999999999999999999999999999976 8999999998   556999999999999


Q ss_pred             EEEeeccccccccccC
Q 018973          199 FSFYKSMEKIHEEEGI  214 (348)
Q Consensus       199 ~~~~~~g~~v~~~~G~  214 (348)
                      +++|++|+.+.++.|.
T Consensus        76 ~~~~~~g~~~~~~~G~   91 (101)
T cd03003          76 LYVFPSGMNPEKYYGD   91 (101)
T ss_pred             EEEEcCCCCcccCCCC
Confidence            9999999988888774

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>PTZ00051 thioredoxin; Provisional

Probab=99.80  E-value=4.1e-19  Score=138.61  Aligned_cols=96  Identities=30%  Similarity=0.460  Sum_probs=88.3

Q ss_pred             CceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeE
Q 018973          120 RVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHF  199 (348)
Q Consensus       120 ~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~  199 (348)
                      .+.++.+.++|+++++  .+++++|+||++||++|+.+.|.|++++++++++.|+.+|+++   ..+++++|+|+++||+
T Consensus         1 ~v~~i~~~~~~~~~~~--~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~---~~~~~~~~~v~~~Pt~   75 (98)
T PTZ00051          1 MVHIVTSQAEFESTLS--QNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDE---LSEVAEKENITSMPTF   75 (98)
T ss_pred             CeEEecCHHHHHHHHh--cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcc---hHHHHHHCCCceeeEE
Confidence            3678889999999987  6899999999999999999999999999999999999999998   5679999999999999


Q ss_pred             EEeeccccccccccCCCCccc
Q 018973          200 SFYKSMEKIHEEEGIGPDQLM  220 (348)
Q Consensus       200 ~~~~~g~~v~~~~G~~~~~l~  220 (348)
                      ++|++|+.+.++.|.+.+.+.
T Consensus        76 ~~~~~g~~~~~~~G~~~~~~~   96 (98)
T PTZ00051         76 KVFKNGSVVDTLLGANDEALK   96 (98)
T ss_pred             EEEeCCeEEEEEeCCCHHHhh
Confidence            999999999999998776654

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=99.79  E-value=7.2e-19  Score=147.86  Aligned_cols=95  Identities=17%  Similarity=0.270  Sum_probs=84.4

Q ss_pred             CCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchhHHHHHHHcCcCC
Q 018973          118 DERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEKTKELCEREKIKK  195 (348)
Q Consensus       118 ~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~~~~l~~~~~V~~  195 (348)
                      +..+.++ +.++|++.+...++++|+|+|||+||++|+.+.|.|+++++++.  ++.|++||+|+   .++++++|+|+.
T Consensus        27 ~~~v~~l-~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~---~~~la~~~~V~~  102 (152)
T cd02962          27 PEHIKYF-TPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGR---FPNVAEKFRVST  102 (152)
T ss_pred             CCccEEc-CHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCC---CHHHHHHcCcee
Confidence            3566666 78899999876678899999999999999999999999999986  39999999999   556999999988


Q ss_pred             ------CCeEEEeeccccccccccCCC
Q 018973          196 ------VPHFSFYKSMEKIHEEEGIGP  216 (348)
Q Consensus       196 ------~Pt~~~~~~g~~v~~~~G~~~  216 (348)
                            +||+++|++|+++.++.|++.
T Consensus       103 ~~~v~~~PT~ilf~~Gk~v~r~~G~~~  129 (152)
T cd02962         103 SPLSKQLPTIILFQGGKEVARRPYYND  129 (152)
T ss_pred             cCCcCCCCEEEEEECCEEEEEEecccc
Confidence                  999999999999999999543

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=99.79  E-value=2.3e-19  Score=140.93  Aligned_cols=84  Identities=15%  Similarity=0.167  Sum_probs=75.3

Q ss_pred             HHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCC-CchhHHHHHHHcCcCCCCeEEEeecc
Q 018973          127 IEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGD-ESEKTKELCEREKIKKVPHFSFYKSM  205 (348)
Q Consensus       127 ~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d-~~~~~~~l~~~~~V~~~Pt~~~~~~g  205 (348)
                      ...+.+++.+.++++|+|+|||+||++|+.+.|.|++++++++++.|++||.+ +   ..+++++|+|+++||+++|++|
T Consensus         6 ~~~~~~~~~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~---~~~l~~~~~V~~~PT~~lf~~g   82 (100)
T cd02999           6 LNIALDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSI---KPSLLSRYGVVGFPTILLFNST   82 (100)
T ss_pred             hhHHHHHHHhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCC---CHHHHHhcCCeecCEEEEEcCC
Confidence            35667777777899999999999999999999999999999999999999988 5   4579999999999999999999


Q ss_pred             ccccccccC
Q 018973          206 EKIHEEEGI  214 (348)
Q Consensus       206 ~~v~~~~G~  214 (348)
                       .+.++.|.
T Consensus        83 -~~~~~~G~   90 (100)
T cd02999          83 -PRVRYNGT   90 (100)
T ss_pred             -ceeEecCC
Confidence             77788774

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=99.79  E-value=2.3e-18  Score=135.00  Aligned_cols=99  Identities=30%  Similarity=0.530  Sum_probs=92.4

Q ss_pred             CChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEE
Q 018973          237 HSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLF  316 (348)
Q Consensus       237 ~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~  316 (348)
                      .+.++|++.+.+   .+++++|+||++||++|+.+.|.|.++++.+.+++.|+.+|++++.+   ++++|+|.++||+++
T Consensus         4 lt~~~f~~~i~~---~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~---l~~~~~v~~~Pt~~~   77 (103)
T PF00085_consen    4 LTDENFEKFINE---SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKE---LCKKYGVKSVPTIIF   77 (103)
T ss_dssp             ESTTTHHHHHTT---TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHH---HHHHTTCSSSSEEEE
T ss_pred             CCHHHHHHHHHc---cCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccch---hhhccCCCCCCEEEE
Confidence            366889999886   37999999999999999999999999999998789999999999877   999999999999999


Q ss_pred             EeCCeEEEEEeCC-ChHHHHHHHHHH
Q 018973          317 IRDGQIRGRYVGS-GKGELIGEILRY  341 (348)
Q Consensus       317 ~~~G~~v~~~~G~-~~~~L~~~l~~~  341 (348)
                      |++|+.+.++.|. +.++|.++|+++
T Consensus        78 ~~~g~~~~~~~g~~~~~~l~~~i~~~  103 (103)
T PF00085_consen   78 FKNGKEVKRYNGPRNAESLIEFIEKH  103 (103)
T ss_dssp             EETTEEEEEEESSSSHHHHHHHHHHH
T ss_pred             EECCcEEEEEECCCCHHHHHHHHHcC
Confidence            9999999999999 999999999875

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.79  E-value=9.3e-19  Score=138.24  Aligned_cols=89  Identities=21%  Similarity=0.316  Sum_probs=79.8

Q ss_pred             ceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCeE
Q 018973          121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPHF  199 (348)
Q Consensus       121 v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~  199 (348)
                      +.++ +.++|++.+.+ .+++|+|+|||+||++|+.+.|.|+++++++.+ +.|++||+++   ..++|++|+|+++||+
T Consensus         3 v~~l-~~~~f~~~i~~-~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~---~~~~~~~~~i~~~Pt~   77 (104)
T cd03004           3 VITL-TPEDFPELVLN-RKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQK---YESLCQQANIRAYPTI   77 (104)
T ss_pred             ceEc-CHHHHHHHHhc-CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCc---hHHHHHHcCCCcccEE
Confidence            5566 78999998875 467999999999999999999999999999865 8999999999   5679999999999999


Q ss_pred             EEeecc-ccccccccC
Q 018973          200 SFYKSM-EKIHEEEGI  214 (348)
Q Consensus       200 ~~~~~g-~~v~~~~G~  214 (348)
                      ++|++| +.+.++.|.
T Consensus        78 ~~~~~g~~~~~~~~G~   93 (104)
T cd03004          78 RLYPGNASKYHSYNGW   93 (104)
T ss_pred             EEEcCCCCCceEccCC
Confidence            999988 888888884

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=99.79  E-value=2.3e-18  Score=135.76  Aligned_cols=97  Identities=27%  Similarity=0.454  Sum_probs=87.2

Q ss_pred             cCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCc-EEEEEEECCCchhHHHHHHhCCCCccceE
Q 018973          236 LHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGT-VVFARMNGDENDSCMQFLRDMNVVEVPTF  314 (348)
Q Consensus       236 ~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~~~~~~~~~l~~~~~V~~~PTl  314 (348)
                      +.+.+++++.+.    .+++++|+||++||++|+.+.|.+.+++++++++ +.|+.+|++ .++   ++++|+|+++||+
T Consensus         4 i~~~~~~~~~i~----~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~---~~~~~~v~~~Pt~   75 (102)
T cd02948           4 INNQEEWEELLS----NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TID---TLKRYRGKCEPTF   75 (102)
T ss_pred             ccCHHHHHHHHc----cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHH---HHHHcCCCcCcEE
Confidence            467888999876    4789999999999999999999999999999743 789999999 454   8999999999999


Q ss_pred             EEEeCCeEEEEEeCCChHHHHHHHHH
Q 018973          315 LFIRDGQIRGRYVGSGKGELIGEILR  340 (348)
Q Consensus       315 ~~~~~G~~v~~~~G~~~~~L~~~l~~  340 (348)
                      ++|++|+.+.+..|.+.+.|.++|++
T Consensus        76 ~~~~~g~~~~~~~G~~~~~~~~~i~~  101 (102)
T cd02948          76 LFYKNGELVAVIRGANAPLLNKTITE  101 (102)
T ss_pred             EEEECCEEEEEEecCChHHHHHHHhh
Confidence            99999999999999988999998875

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=99.78  E-value=1.9e-18  Score=134.38  Aligned_cols=94  Identities=19%  Similarity=0.360  Sum_probs=84.8

Q ss_pred             hHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCC
Q 018973          241 DVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDG  320 (348)
Q Consensus       241 ~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G  320 (348)
                      +|++.+.+.  .+++++|+||++||++|+.+.|.+++++..+++.+.++.+|++++++   ++++|+|.++||+++|++|
T Consensus         2 ~f~~~i~~~--~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~---l~~~~~i~~~Pt~~~~~~g   76 (96)
T cd02956           2 NFQQVLQES--TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQ---IAQQFGVQALPTVYLFAAG   76 (96)
T ss_pred             ChHHHHHhc--CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHH---HHHHcCCCCCCEEEEEeCC
Confidence            466666543  47899999999999999999999999999998789999999999887   9999999999999999999


Q ss_pred             eEEEEEeCC-ChHHHHHHHH
Q 018973          321 QIRGRYVGS-GKGELIGEIL  339 (348)
Q Consensus       321 ~~v~~~~G~-~~~~L~~~l~  339 (348)
                      +.+.++.|. +.++|..+|+
T Consensus        77 ~~~~~~~g~~~~~~l~~~l~   96 (96)
T cd02956          77 QPVDGFQGAQPEEQLRQMLD   96 (96)
T ss_pred             EEeeeecCCCCHHHHHHHhC
Confidence            999999999 8999988863

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=99.78  E-value=2.2e-18  Score=139.04  Aligned_cols=103  Identities=14%  Similarity=0.253  Sum_probs=92.0

Q ss_pred             ceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChh--hh--hhhhHHHHHHHHh--CCcEEEEEEECCCchhHHHHHHh
Q 018973          232 AVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGP--CV--KVYPTVIKLSRQM--AGTVVFARMNGDENDSCMQFLRD  305 (348)
Q Consensus       232 ~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~--C~--~~~p~l~~la~~~--~~~v~~~~vd~~~~~~~~~l~~~  305 (348)
                      .+..+ +.++|++.+.++   +.++|++||++||++  |+  .+.|.+.+++.++  .+++.|++||++++++   ++++
T Consensus        10 ~v~~l-t~~nF~~~v~~~---~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~---La~~   82 (120)
T cd03065          10 RVIDL-NEKNYKQVLKKY---DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAK---VAKK   82 (120)
T ss_pred             ceeeC-ChhhHHHHHHhC---CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHH---HHHH
Confidence            34444 468999998874   789999999999988  99  8889999999998  7789999999999988   9999


Q ss_pred             CCCCccceEEEEeCCeEEEEEeCC-ChHHHHHHHHHHh
Q 018973          306 MNVVEVPTFLFIRDGQIRGRYVGS-GKGELIGEILRYQ  342 (348)
Q Consensus       306 ~~V~~~PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~  342 (348)
                      |+|.++||+++|++|+++. +.|. +.+.|.++|.+..
T Consensus        83 ~~I~~iPTl~lfk~G~~v~-~~G~~~~~~l~~~l~~~~  119 (120)
T cd03065          83 LGLDEEDSIYVFKDDEVIE-YDGEFAADTLVEFLLDLI  119 (120)
T ss_pred             cCCccccEEEEEECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence            9999999999999999887 9999 9999999998764

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=99.78  E-value=1.1e-18  Score=150.79  Aligned_cols=97  Identities=19%  Similarity=0.190  Sum_probs=87.4

Q ss_pred             CCCCCceEecCHHHHHHHHHhcC-CCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcC
Q 018973          116 PRDERVKKVHSIEEFDEALRLAK-NKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIK  194 (348)
Q Consensus       116 ~~~~~v~~v~s~~~f~~~l~~~~-~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~  194 (348)
                      ...+.+.+|.+.++|.+.+.+.+ +.+|||+||++||++|+.+.|.|++|+++|++++|++||+++   . +++.+|+|+
T Consensus        59 ~~~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~---~-~l~~~f~v~  134 (175)
T cd02987          59 RRFGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASA---T-GASDEFDTD  134 (175)
T ss_pred             CCCCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccc---h-hhHHhCCCC
Confidence            45788999977799999987543 569999999999999999999999999999999999999998   3 699999999


Q ss_pred             CCCeEEEeeccccccccccCCC
Q 018973          195 KVPHFSFYKSMEKIHEEEGIGP  216 (348)
Q Consensus       195 ~~Pt~~~~~~g~~v~~~~G~~~  216 (348)
                      .+||+++|++|+.+.++.|...
T Consensus       135 ~vPTlllyk~G~~v~~~vG~~~  156 (175)
T cd02987         135 ALPALLVYKGGELIGNFVRVTE  156 (175)
T ss_pred             CCCEEEEEECCEEEEEEechHH
Confidence            9999999999999999988643

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=99.78  E-value=4e-18  Score=140.83  Aligned_cols=105  Identities=18%  Similarity=0.251  Sum_probs=93.1

Q ss_pred             eeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccc
Q 018973          233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVP  312 (348)
Q Consensus       233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~P  312 (348)
                      +..+.+.+++++.+...  .+++++|+||++||+||+.+.|.|.++++++++.+.|++||+|++++   ++++|+|.+.|
T Consensus         5 l~~l~s~~e~d~~I~~~--~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~d---la~~y~I~~~~   79 (142)
T PLN00410          5 LPHLHSGWAVDQAILAE--EERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPD---FNTMYELYDPC   79 (142)
T ss_pred             HhhhCCHHHHHHHHHhc--CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHH---HHHHcCccCCC
Confidence            34567899999998754  58899999999999999999999999999998779999999999998   99999999887


Q ss_pred             eEE-EEeCCe-EEEEEeC--------C-ChHHHHHHHHHHh
Q 018973          313 TFL-FIRDGQ-IRGRYVG--------S-GKGELIGEILRYQ  342 (348)
Q Consensus       313 Tl~-~~~~G~-~v~~~~G--------~-~~~~L~~~l~~~~  342 (348)
                      |++ +|++|+ .+.+..|        . +.++|++.++..+
T Consensus        80 t~~~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~  120 (142)
T PLN00410         80 TVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY  120 (142)
T ss_pred             cEEEEEECCeEEEEEecccccccccccCCHHHHHHHHHHHH
Confidence            554 999999 8899999        5 8889999888764

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=99.77  E-value=1.3e-18  Score=140.48  Aligned_cols=93  Identities=15%  Similarity=0.250  Sum_probs=80.9

Q ss_pred             CCCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHH--HH--hhhhHHHHHHHHc--C-CcEEEEEeCCCchhHHHHHH
Q 018973          117 RDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLD--SS--KIYPFMVDLSRQC--N-DVEFILVMGDESEKTKELCE  189 (348)
Q Consensus       117 ~~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~--C~--~~~p~l~~la~~~--~-~v~f~~vd~d~~~~~~~l~~  189 (348)
                      +...+..+ |.++|++.+.+ .+.++|++||+.||+|  |+  .+.|.++++++++  . ++.|++||+|+   .+++|+
T Consensus         7 ~~~~v~~l-t~~nF~~~v~~-~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~---~~~La~   81 (120)
T cd03065           7 GKDRVIDL-NEKNYKQVLKK-YDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKK---DAKVAK   81 (120)
T ss_pred             CCcceeeC-ChhhHHHHHHh-CCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCC---CHHHHH
Confidence            34456666 78999999875 5779999999999988  99  8999999999998  5 49999999999   567999


Q ss_pred             HcCcCCCCeEEEeeccccccccccCC
Q 018973          190 REKIKKVPHFSFYKSMEKIHEEEGIG  215 (348)
Q Consensus       190 ~~~V~~~Pt~~~~~~g~~v~~~~G~~  215 (348)
                      +|||+++||+++|++|+.+. +.|..
T Consensus        82 ~~~I~~iPTl~lfk~G~~v~-~~G~~  106 (120)
T cd03065          82 KLGLDEEDSIYVFKDDEVIE-YDGEF  106 (120)
T ss_pred             HcCCccccEEEEEECCEEEE-eeCCC
Confidence            99999999999999999887 88854

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.77  E-value=8e-19  Score=158.54  Aligned_cols=97  Identities=18%  Similarity=0.289  Sum_probs=86.5

Q ss_pred             ceEecCHHHHHHHHH-hcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCe
Q 018973          121 VKKVHSIEEFDEALR-LAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPH  198 (348)
Q Consensus       121 v~~v~s~~~f~~~l~-~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt  198 (348)
                      +++| |..+|+..+. +++.+||+|+||||||+||+.+.|.|++++.+|.+ +.+++||||+   .+.++..|||+++||
T Consensus        25 I~dv-T~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~---~p~vAaqfgiqsIPt  100 (304)
T COG3118          25 IKDV-TEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDA---EPMVAAQFGVQSIPT  100 (304)
T ss_pred             ceec-hHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCc---chhHHHHhCcCcCCe
Confidence            8888 7788876644 45577999999999999999999999999999988 9999999999   556999999999999


Q ss_pred             EEEeeccccccccccCCCC-cccc
Q 018973          199 FSFYKSMEKIHEEEGIGPD-QLMG  221 (348)
Q Consensus       199 ~~~~~~g~~v~~~~G~~~~-~l~~  221 (348)
                      ++.|++|++|+.|.|..++ ++++
T Consensus       101 V~af~dGqpVdgF~G~qPesqlr~  124 (304)
T COG3118         101 VYAFKDGQPVDGFQGAQPESQLRQ  124 (304)
T ss_pred             EEEeeCCcCccccCCCCcHHHHHH
Confidence            9999999999999998876 4443

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=99.77  E-value=1.4e-18  Score=135.29  Aligned_cols=92  Identities=27%  Similarity=0.471  Sum_probs=82.8

Q ss_pred             CHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHH-cCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeec
Q 018973          126 SIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQ-CNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKS  204 (348)
Q Consensus       126 s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~-~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~  204 (348)
                      |.++|++++.++.+++|+|+||++||++|+.+.|.|++++++ ++++.|+++|.++   ..+++++|+|+++||+++|++
T Consensus         1 s~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~---~~~~~~~~~i~~~Pt~~~~~~   77 (97)
T cd02984           1 SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEE---LPEISEKFEITAVPTFVFFRN   77 (97)
T ss_pred             CHHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEcccc---CHHHHHhcCCccccEEEEEEC
Confidence            568999999876689999999999999999999999999999 5679999999998   556999999999999999999


Q ss_pred             cccccccccCCCCccc
Q 018973          205 MEKIHEEEGIGPDQLM  220 (348)
Q Consensus       205 g~~v~~~~G~~~~~l~  220 (348)
                      |+.+.+..|...+.+.
T Consensus        78 g~~~~~~~g~~~~~l~   93 (97)
T cd02984          78 GTIVDRVSGADPKELA   93 (97)
T ss_pred             CEEEEEEeCCCHHHHH
Confidence            9999999997766554

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=99.77  E-value=1.7e-18  Score=134.72  Aligned_cols=85  Identities=19%  Similarity=0.338  Sum_probs=76.5

Q ss_pred             HHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeeccc
Q 018973          128 EEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPHFSFYKSME  206 (348)
Q Consensus       128 ~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~  206 (348)
                      ++|++.+.+.++++|+|+|||+||++|+.+.|.++++++.+++ +.|++||+++   .++++++|+|+++||+++|++|+
T Consensus         1 ~~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~---~~~l~~~~~i~~~Pt~~~~~~g~   77 (96)
T cd02956           1 QNFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDA---QPQIAQQFGVQALPTVYLFAAGQ   77 (96)
T ss_pred             CChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccC---CHHHHHHcCCCCCCEEEEEeCCE
Confidence            3678888766789999999999999999999999999999976 8899999999   55699999999999999999999


Q ss_pred             cccccccCC
Q 018973          207 KIHEEEGIG  215 (348)
Q Consensus       207 ~v~~~~G~~  215 (348)
                      .+.++.|..
T Consensus        78 ~~~~~~g~~   86 (96)
T cd02956          78 PVDGFQGAQ   86 (96)
T ss_pred             EeeeecCCC
Confidence            998888743

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=99.77  E-value=1.4e-18  Score=136.22  Aligned_cols=93  Identities=29%  Similarity=0.478  Sum_probs=83.1

Q ss_pred             ecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC-CcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEe
Q 018973          124 VHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN-DVEFILVMGDESEKTKELCEREKIKKVPHFSFY  202 (348)
Q Consensus       124 v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~-~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~  202 (348)
                      ..|.++|++.+.+ .++++||+||++||++|+.+.|.|++++++++ ++.|+.||+++   .++++++|+|+.+||+++|
T Consensus         3 ~lt~~~f~~~i~~-~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~---~~~l~~~~~v~~~Pt~~~~   78 (103)
T PF00085_consen    3 VLTDENFEKFINE-SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDE---NKELCKKYGVKSVPTIIFF   78 (103)
T ss_dssp             EESTTTHHHHHTT-TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTT---SHHHHHHTTCSSSSEEEEE
T ss_pred             ECCHHHHHHHHHc-cCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhc---cchhhhccCCCCCCEEEEE
Confidence            3489999999985 58999999999999999999999999999998 69999999998   5679999999999999999


Q ss_pred             eccccccccccC-CCCccc
Q 018973          203 KSMEKIHEEEGI-GPDQLM  220 (348)
Q Consensus       203 ~~g~~v~~~~G~-~~~~l~  220 (348)
                      ++|+.+.++.|. +.+.|.
T Consensus        79 ~~g~~~~~~~g~~~~~~l~   97 (103)
T PF00085_consen   79 KNGKEVKRYNGPRNAESLI   97 (103)
T ss_dssp             ETTEEEEEEESSSSHHHHH
T ss_pred             ECCcEEEEEECCCCHHHHH
Confidence            999999988885 344433

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=99.76  E-value=4.1e-18  Score=136.44  Aligned_cols=100  Identities=9%  Similarity=0.049  Sum_probs=84.8

Q ss_pred             eeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHH-HhCCCCcc
Q 018973          233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFL-RDMNVVEV  311 (348)
Q Consensus       233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~-~~~~V~~~  311 (348)
                      +.++ +.++|++.+.- ...+++++|.||++||++|+.+.|.++++++++++.+.|++||++++.+   ++ ++|+|.++
T Consensus        11 v~~l-~~~~f~~~~~v-~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~---l~~~~~~I~~~   85 (113)
T cd03006          11 VLDF-YKGQLDYAEEL-RTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQG---KCRKQKHFFYF   85 (113)
T ss_pred             eEEe-chhhhHHHHhc-ccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChH---HHHHhcCCccc
Confidence            4444 44667765221 1157999999999999999999999999999998889999999999887   88 58999999


Q ss_pred             ceEEEEeCCeEEEEEeCC-ChHHHHHH
Q 018973          312 PTFLFIRDGQIRGRYVGS-GKGELIGE  337 (348)
Q Consensus       312 PTl~~~~~G~~v~~~~G~-~~~~L~~~  337 (348)
                      ||+++|++|+...++.|. +.+.|..+
T Consensus        86 PTl~lf~~g~~~~~y~G~~~~~~i~~~  112 (113)
T cd03006          86 PVIHLYYRSRGPIEYKGPMRAPYMEKF  112 (113)
T ss_pred             CEEEEEECCccceEEeCCCCHHHHHhh
Confidence            999999999988999999 88888875

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.76  E-value=3.8e-18  Score=134.09  Aligned_cols=93  Identities=17%  Similarity=0.384  Sum_probs=84.8

Q ss_pred             ChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEE
Q 018973          238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFI  317 (348)
Q Consensus       238 s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~  317 (348)
                      +.++|++.+.    .+++++|+||++||++|+.+.|.+.++++++++.+.|+++|+++++.   ++++++|+++||+++|
T Consensus         7 ~~~~f~~~v~----~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~---~~~~~~v~~~Pt~~~~   79 (101)
T cd03003           7 DRGDFDAAVN----SGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRM---LCRSQGVNSYPSLYVF   79 (101)
T ss_pred             CHhhHHHHhc----CCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHH---HHHHcCCCccCEEEEE
Confidence            5678888875    35899999999999999999999999999998889999999999887   9999999999999999


Q ss_pred             eCCeEEEEEeCC-ChHHHHHH
Q 018973          318 RDGQIRGRYVGS-GKGELIGE  337 (348)
Q Consensus       318 ~~G~~v~~~~G~-~~~~L~~~  337 (348)
                      ++|+.+.++.|. +.++|.++
T Consensus        80 ~~g~~~~~~~G~~~~~~l~~f  100 (101)
T cd03003          80 PSGMNPEKYYGDRSKESLVKF  100 (101)
T ss_pred             cCCCCcccCCCCCCHHHHHhh
Confidence            999999999998 88888765

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.76  E-value=5.4e-18  Score=133.88  Aligned_cols=95  Identities=21%  Similarity=0.383  Sum_probs=85.7

Q ss_pred             ChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEE
Q 018973          238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFI  317 (348)
Q Consensus       238 s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~  317 (348)
                      +.++|++.+.+   .+++++|+||++||++|+.+.|.++++++++.+.+.|+++|++++++   ++++|+|.++||+++|
T Consensus         7 ~~~~f~~~i~~---~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~---~~~~~~i~~~Pt~~~~   80 (104)
T cd03004           7 TPEDFPELVLN---RKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYES---LCQQANIRAYPTIRLY   80 (104)
T ss_pred             CHHHHHHHHhc---CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHH---HHHHcCCCcccEEEEE
Confidence            56788888765   36799999999999999999999999999998789999999999887   9999999999999999


Q ss_pred             eCC-eEEEEEeCC-C-hHHHHHHH
Q 018973          318 RDG-QIRGRYVGS-G-KGELIGEI  338 (348)
Q Consensus       318 ~~G-~~v~~~~G~-~-~~~L~~~l  338 (348)
                      ++| +.+.++.|. + .++|.+||
T Consensus        81 ~~g~~~~~~~~G~~~~~~~l~~~i  104 (104)
T cd03004          81 PGNASKYHSYNGWHRDADSILEFI  104 (104)
T ss_pred             cCCCCCceEccCCCCCHHHHHhhC
Confidence            988 889999998 6 88888764

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=99.75  E-value=2.9e-18  Score=135.59  Aligned_cols=85  Identities=14%  Similarity=0.183  Sum_probs=78.1

Q ss_pred             CHHHHHHHHHhcCCCEEEEEEeCCC--CHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCeEEEe
Q 018973          126 SIEEFDEALRLAKNKLVVVEFAASR--SLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPHFSFY  202 (348)
Q Consensus       126 s~~~f~~~l~~~~~k~vvV~F~a~w--C~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~  202 (348)
                      |..+|++.++  .+..+||+|||+|  |++|+.+.|.|++++++|++ +.|++||+|+   .++++.+|+|+++||+++|
T Consensus        16 ~~~~~~~~~~--~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~---~~~la~~f~V~sIPTli~f   90 (111)
T cd02965          16 DAATLDDWLA--AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRAD---EQALAARFGVLRTPALLFF   90 (111)
T ss_pred             ccccHHHHHh--CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCC---CHHHHHHcCCCcCCEEEEE
Confidence            7788998884  6889999999997  99999999999999999988 7899999999   4569999999999999999


Q ss_pred             eccccccccccCC
Q 018973          203 KSMEKIHEEEGIG  215 (348)
Q Consensus       203 ~~g~~v~~~~G~~  215 (348)
                      ++|+.+.++.|..
T Consensus        91 kdGk~v~~~~G~~  103 (111)
T cd02965          91 RDGRYVGVLAGIR  103 (111)
T ss_pred             ECCEEEEEEeCcc
Confidence            9999999998843

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>PRK10996 thioredoxin 2; Provisional

Probab=99.75  E-value=2.2e-17  Score=137.58  Aligned_cols=98  Identities=21%  Similarity=0.439  Sum_probs=89.9

Q ss_pred             ChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEE
Q 018973          238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFI  317 (348)
Q Consensus       238 s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~  317 (348)
                      +.+++++.+.    .+++++|+||++||++|+.+.|.|.++++++.+++.|+++|++++++   ++++|+|.++||+++|
T Consensus        41 ~~~~~~~~i~----~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~---l~~~~~V~~~Ptlii~  113 (139)
T PRK10996         41 TGETLDKLLQ----DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERE---LSARFRIRSIPTIMIF  113 (139)
T ss_pred             CHHHHHHHHh----CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHH---HHHhcCCCccCEEEEE
Confidence            5678888775    47999999999999999999999999999998789999999999887   9999999999999999


Q ss_pred             eCCeEEEEEeCC-ChHHHHHHHHHHh
Q 018973          318 RDGQIRGRYVGS-GKGELIGEILRYQ  342 (348)
Q Consensus       318 ~~G~~v~~~~G~-~~~~L~~~l~~~~  342 (348)
                      ++|+++.++.|. +.+.|.++|++++
T Consensus       114 ~~G~~v~~~~G~~~~e~l~~~l~~~~  139 (139)
T PRK10996        114 KNGQVVDMLNGAVPKAPFDSWLNEAL  139 (139)
T ss_pred             ECCEEEEEEcCCCCHHHHHHHHHHhC
Confidence            999999999999 8999999998763

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=6.3e-18  Score=152.75  Aligned_cols=107  Identities=21%  Similarity=0.376  Sum_probs=95.8

Q ss_pred             eeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccc
Q 018973          233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVP  312 (348)
Q Consensus       233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~P  312 (348)
                      ++.+ +..+|++.+... ...+||+|+||+|||++|+.+.|.|++++.++++++++++||+|+.+.   ++.+|||+++|
T Consensus        25 I~dv-T~anfe~~V~~~-S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~---vAaqfgiqsIP   99 (304)
T COG3118          25 IKDV-TEANFEQEVIQS-SREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPM---VAAQFGVQSIP   99 (304)
T ss_pred             ceec-hHhHHHHHHHHH-ccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchh---HHHHhCcCcCC
Confidence            4444 567777766543 246699999999999999999999999999999999999999999998   99999999999


Q ss_pred             eEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhCC
Q 018973          313 TFLFIRDGQIRGRYVGS-GKGELIGEILRYQGV  344 (348)
Q Consensus       313 Tl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~~  344 (348)
                      |++.|++|+.+..+.|. .++.+.+||+++++.
T Consensus       100 tV~af~dGqpVdgF~G~qPesqlr~~ld~~~~~  132 (304)
T COG3118         100 TVYAFKDGQPVDGFQGAQPESQLRQFLDKVLPA  132 (304)
T ss_pred             eEEEeeCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence            99999999999999999 888999999998764

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=99.75  E-value=7e-18  Score=134.28  Aligned_cols=88  Identities=20%  Similarity=0.324  Sum_probs=75.4

Q ss_pred             CceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHc----C---CcEEEEEeCCCchhHHHHHHHcC
Q 018973          120 RVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQC----N---DVEFILVMGDESEKTKELCEREK  192 (348)
Q Consensus       120 ~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~----~---~v~f~~vd~d~~~~~~~l~~~~~  192 (348)
                      .++++ +.++|++.+.  .+++++|+|||+||++|+.+.|.|+++++++    +   .+.|++||+|+   ..+++++||
T Consensus         2 ~v~~l-~~~~f~~~i~--~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~---~~~l~~~~~   75 (108)
T cd02996           2 EIVSL-TSGNIDDILQ--SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDK---ESDIADRYR   75 (108)
T ss_pred             ceEEc-CHhhHHHHHh--cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCC---CHHHHHhCC
Confidence            35566 7899999886  5789999999999999999999999998864    2   38999999999   456999999


Q ss_pred             cCCCCeEEEeecccc-cccccc
Q 018973          193 IKKVPHFSFYKSMEK-IHEEEG  213 (348)
Q Consensus       193 V~~~Pt~~~~~~g~~-v~~~~G  213 (348)
                      |+++||+++|++|+. ..++.|
T Consensus        76 v~~~Ptl~~~~~g~~~~~~~~g   97 (108)
T cd02996          76 INKYPTLKLFRNGMMMKREYRG   97 (108)
T ss_pred             CCcCCEEEEEeCCcCcceecCC
Confidence            999999999999984 355556

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>PRK09381 trxA thioredoxin; Provisional

Probab=99.75  E-value=3.5e-17  Score=130.41  Aligned_cols=104  Identities=21%  Similarity=0.452  Sum_probs=91.5

Q ss_pred             ceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCcc
Q 018973          232 AVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEV  311 (348)
Q Consensus       232 ~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~  311 (348)
                      .+..+ +.+++++.+.+   .+++++|+||++||++|+.+.|.++++++++++++.++.+|++..+.   ++++|+|.++
T Consensus         4 ~v~~~-~~~~~~~~v~~---~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~---~~~~~~v~~~   76 (109)
T PRK09381          4 KIIHL-TDDSFDTDVLK---ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG---TAPKYGIRGI   76 (109)
T ss_pred             cceee-ChhhHHHHHhc---CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChh---HHHhCCCCcC
Confidence            34455 34677765543   37899999999999999999999999999998889999999999887   8999999999


Q ss_pred             ceEEEEeCCeEEEEEeCC-ChHHHHHHHHHHh
Q 018973          312 PTFLFIRDGQIRGRYVGS-GKGELIGEILRYQ  342 (348)
Q Consensus       312 PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~  342 (348)
                      ||+++|++|+++.++.|. +.++|.++|++++
T Consensus        77 Pt~~~~~~G~~~~~~~G~~~~~~l~~~i~~~~  108 (109)
T PRK09381         77 PTLLLFKNGEVAATKVGALSKGQLKEFLDANL  108 (109)
T ss_pred             CEEEEEeCCeEEEEecCCCCHHHHHHHHHHhc
Confidence            999999999999999999 9999999998765

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=99.74  E-value=1.3e-17  Score=130.98  Aligned_cols=91  Identities=19%  Similarity=0.185  Sum_probs=79.9

Q ss_pred             hHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECC-CchhHHHHHHhCCCCccceEEEEeC
Q 018973          241 DVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGD-ENDSCMQFLRDMNVVEVPTFLFIRD  319 (348)
Q Consensus       241 ~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~-~~~~~~~l~~~~~V~~~PTl~~~~~  319 (348)
                      .+.+++.+.  .+++++|+||++||++|+.+.|.|+++++++++ +.++.+|.+ ++++   ++++|+|.++||+++|++
T Consensus         8 ~~~~~~~~~--~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~~vd~~~~~~~---l~~~~~V~~~PT~~lf~~   81 (100)
T cd02999           8 IALDLMAFN--REDYTAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEESSIKPS---LLSRYGVVGFPTILLFNS   81 (100)
T ss_pred             HHHHHHHhc--CCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceEEEECCCCCHH---HHHhcCCeecCEEEEEcC
Confidence            445555544  689999999999999999999999999999964 889999998 6676   999999999999999999


Q ss_pred             CeEEEEEeCC-ChHHHHHHH
Q 018973          320 GQIRGRYVGS-GKGELIGEI  338 (348)
Q Consensus       320 G~~v~~~~G~-~~~~L~~~l  338 (348)
                      | .+.++.|. +.++|.+|+
T Consensus        82 g-~~~~~~G~~~~~~l~~f~  100 (100)
T cd02999          82 T-PRVRYNGTRTLDSLAAFY  100 (100)
T ss_pred             C-ceeEecCCCCHHHHHhhC
Confidence            9 78899999 999888774

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=99.74  E-value=1.6e-17  Score=132.98  Aligned_cols=99  Identities=18%  Similarity=0.249  Sum_probs=85.8

Q ss_pred             ChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchhHHHHHHhCCCCccceEEE
Q 018973          238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDSCMQFLRDMNVVEVPTFLF  316 (348)
Q Consensus       238 s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~  316 (348)
                      +.+++++.+.. ...+++++|+||++||++|+.+.|.+.++++++++ ++.++++|+++++.   ++++++|.++||+++
T Consensus        10 ~~~~~~~~~~~-~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~---l~~~~~V~~~Pt~~i   85 (111)
T cd02963          10 TFSQYENEIVP-KSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERR---LARKLGAHSVPAIVG   85 (111)
T ss_pred             eHHHHHHhhcc-ccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHH---HHHHcCCccCCEEEE
Confidence            44666654322 11579999999999999999999999999999964 49999999998877   999999999999999


Q ss_pred             EeCCeEEEEEeCC-ChHHHHHHHHH
Q 018973          317 IRDGQIRGRYVGS-GKGELIGEILR  340 (348)
Q Consensus       317 ~~~G~~v~~~~G~-~~~~L~~~l~~  340 (348)
                      |++|+.+.++.|. +.++|.++|++
T Consensus        86 ~~~g~~~~~~~G~~~~~~l~~~i~~  110 (111)
T cd02963          86 IINGQVTFYHDSSFTKQHVVDFVRK  110 (111)
T ss_pred             EECCEEEEEecCCCCHHHHHHHHhc
Confidence            9999999999998 89999999876

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=99.74  E-value=3.9e-17  Score=127.10  Aligned_cols=96  Identities=27%  Similarity=0.505  Sum_probs=86.1

Q ss_pred             ChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEE
Q 018973          238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFI  317 (348)
Q Consensus       238 s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~  317 (348)
                      +.+++++.+...  .+++++|+||++||++|+.+.+.|+++++++..++.++++|.++.++   ++++|+|.++||+++|
T Consensus         1 s~~~~~~~~~~~--~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~---~~~~~~i~~~Pt~~~~   75 (97)
T cd02984           1 SEEEFEELLKSD--ASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPE---ISEKFEITAVPTFVFF   75 (97)
T ss_pred             CHHHHHHHHhhC--CCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHH---HHHhcCCccccEEEEE
Confidence            356788888764  37999999999999999999999999999965679999999998887   9999999999999999


Q ss_pred             eCCeEEEEEeCCChHHHHHHH
Q 018973          318 RDGQIRGRYVGSGKGELIGEI  338 (348)
Q Consensus       318 ~~G~~v~~~~G~~~~~L~~~l  338 (348)
                      ++|+++.++.|.+.++|.+.|
T Consensus        76 ~~g~~~~~~~g~~~~~l~~~~   96 (97)
T cd02984          76 RNGTIVDRVSGADPKELAKKV   96 (97)
T ss_pred             ECCEEEEEEeCCCHHHHHHhh
Confidence            999999999999888887765

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=99.74  E-value=2.6e-17  Score=130.12  Aligned_cols=92  Identities=17%  Similarity=0.278  Sum_probs=83.7

Q ss_pred             ChhhHHHHhhhcccCCcEEEEEEeCCC--ChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEE
Q 018973          238 SKEDVEKLIDDHKVDQKLIVLDVGLKH--CGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL  315 (348)
Q Consensus       238 s~~~~~~~l~~~~~~~k~vvV~F~a~w--C~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~  315 (348)
                      +.++|++.++    .+.+++|.||++|  |++|+.+.|.|.++++++++.+.|+++|++++++   ++.+|+|.++||++
T Consensus        16 ~~~~~~~~~~----~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~---la~~f~V~sIPTli   88 (111)
T cd02965          16 DAATLDDWLA----AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQA---LAARFGVLRTPALL   88 (111)
T ss_pred             ccccHHHHHh----CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHH---HHHHcCCCcCCEEE
Confidence            4567777774    4789999999997  9999999999999999998889999999999987   99999999999999


Q ss_pred             EEeCCeEEEEEeCC-ChHHHHH
Q 018973          316 FIRDGQIRGRYVGS-GKGELIG  336 (348)
Q Consensus       316 ~~~~G~~v~~~~G~-~~~~L~~  336 (348)
                      +|++|+.+.++.|. +.++|.+
T Consensus        89 ~fkdGk~v~~~~G~~~~~e~~~  110 (111)
T cd02965          89 FFRDGRYVGVLAGIRDWDEYVA  110 (111)
T ss_pred             EEECCEEEEEEeCccCHHHHhh
Confidence            99999999999999 8888764

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=99.73  E-value=1.1e-17  Score=133.86  Aligned_cols=86  Identities=9%  Similarity=0.155  Sum_probs=76.0

Q ss_pred             CHHHHHHH-HHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEe
Q 018973          126 SIEEFDEA-LRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEKTKELCEREKIKKVPHFSFY  202 (348)
Q Consensus       126 s~~~f~~~-l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~  202 (348)
                      +.++|++. +....+++|+|+|||+||++|+.+.|.+++++++++  ++.|++||+++   ..+++++++|+++||+++|
T Consensus        10 ~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~---~~~l~~~~~V~~~Pt~~i~   86 (111)
T cd02963          10 TFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH---ERRLARKLGAHSVPAIVGI   86 (111)
T ss_pred             eHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc---cHHHHHHcCCccCCEEEEE
Confidence            67888764 444468999999999999999999999999999986  48999999998   4569999999999999999


Q ss_pred             eccccccccccC
Q 018973          203 KSMEKIHEEEGI  214 (348)
Q Consensus       203 ~~g~~v~~~~G~  214 (348)
                      ++|+.+.+..|.
T Consensus        87 ~~g~~~~~~~G~   98 (111)
T cd02963          87 INGQVTFYHDSS   98 (111)
T ss_pred             ECCEEEEEecCC
Confidence            999998888884

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=99.73  E-value=5.5e-17  Score=128.21  Aligned_cols=98  Identities=21%  Similarity=0.373  Sum_probs=84.3

Q ss_pred             hhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEe
Q 018973          239 KEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIR  318 (348)
Q Consensus       239 ~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~  318 (348)
                      .+++++.+.+.  .++++||.|+++||++|+.+.|.|+++++++++.+.|++||+|+.++   ++++|+|...||+++|+
T Consensus         2 ~~~~d~~i~~~--~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~d---va~~y~I~amPtfvffk   76 (114)
T cd02986           2 KKEVDQAIKST--AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPV---YTQYFDISYIPSTIFFF   76 (114)
T ss_pred             HHHHHHHHHhc--CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHH---HHHhcCceeCcEEEEEE
Confidence            46777777765  68999999999999999999999999999996559999999999998   99999999999999999


Q ss_pred             CCeEEE---------EEeCC--ChHHHHHHHHHH
Q 018973          319 DGQIRG---------RYVGS--GKGELIGEILRY  341 (348)
Q Consensus       319 ~G~~v~---------~~~G~--~~~~L~~~l~~~  341 (348)
                      +|+-+.         ++.+.  +++++++.++..
T Consensus        77 ngkh~~~d~gt~~~~k~~~~~~~k~~~idi~e~~  110 (114)
T cd02986          77 NGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI  110 (114)
T ss_pred             CCcEEEEecCCCCCcEEEEEcCchhHHHHHHHHH
Confidence            998763         33344  678888888754

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=99.72  E-value=6.2e-17  Score=130.00  Aligned_cols=92  Identities=14%  Similarity=0.291  Sum_probs=83.5

Q ss_pred             ccceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCC
Q 018973          230 HSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVV  309 (348)
Q Consensus       230 ~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~  309 (348)
                      +..+..+.+.+++.+.+.+    +++++|+||++||++|+.+.|.++++++++++ ++|++||++++++   ++++|+|.
T Consensus         3 ~g~v~~i~~~~~~~~~i~~----~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~-i~f~~Vd~~~~~~---l~~~~~v~   74 (113)
T cd02989           3 HGKYREVSDEKEFFEIVKS----SERVVCHFYHPEFFRCKIMDKHLEILAKKHLE-TKFIKVNAEKAPF---LVEKLNIK   74 (113)
T ss_pred             CCCeEEeCCHHHHHHHHhC----CCcEEEEEECCCCccHHHHHHHHHHHHHHcCC-CEEEEEEcccCHH---HHHHCCCc
Confidence            3456778888999999874    58999999999999999999999999999864 9999999999987   99999999


Q ss_pred             ccceEEEEeCCeEEEEEeCC
Q 018973          310 EVPTFLFIRDGQIRGRYVGS  329 (348)
Q Consensus       310 ~~PTl~~~~~G~~v~~~~G~  329 (348)
                      .+||+++|++|+.++++.|.
T Consensus        75 ~vPt~l~fk~G~~v~~~~g~   94 (113)
T cd02989          75 VLPTVILFKNGKTVDRIVGF   94 (113)
T ss_pred             cCCEEEEEECCEEEEEEECc
Confidence            99999999999999998875

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>PTZ00051 thioredoxin; Provisional

Probab=99.71  E-value=1.3e-16  Score=124.43  Aligned_cols=95  Identities=23%  Similarity=0.505  Sum_probs=85.1

Q ss_pred             eeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccc
Q 018973          233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVP  312 (348)
Q Consensus       233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~P  312 (348)
                      +..+.+.+++.+.+.    .+++++|+||++||++|+.+.+.+.++++++. ++.|+.+|++++.+   ++++|+|.++|
T Consensus         2 v~~i~~~~~~~~~~~----~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~-~~~~~~vd~~~~~~---~~~~~~v~~~P   73 (98)
T PTZ00051          2 VHIVTSQAEFESTLS----QNELVIVDFYAEWCGPCKRIAPFYEECSKEYT-KMVFVKVDVDELSE---VAEKENITSMP   73 (98)
T ss_pred             eEEecCHHHHHHHHh----cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC-CcEEEEEECcchHH---HHHHCCCceee
Confidence            456778888988876    36899999999999999999999999999885 49999999998776   99999999999


Q ss_pred             eEEEEeCCeEEEEEeCCChHHHH
Q 018973          313 TFLFIRDGQIRGRYVGSGKGELI  335 (348)
Q Consensus       313 Tl~~~~~G~~v~~~~G~~~~~L~  335 (348)
                      |+++|++|+++.++.|...++|.
T Consensus        74 t~~~~~~g~~~~~~~G~~~~~~~   96 (98)
T PTZ00051         74 TFKVFKNGSVVDTLLGANDEALK   96 (98)
T ss_pred             EEEEEeCCeEEEEEeCCCHHHhh
Confidence            99999999999999999777665

>PRK09381 trxA thioredoxin; Provisional

Probab=99.71  E-value=6e-17  Score=129.00  Aligned_cols=91  Identities=14%  Similarity=0.264  Sum_probs=80.3

Q ss_pred             CCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCC
Q 018973          119 ERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVP  197 (348)
Q Consensus       119 ~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~P  197 (348)
                      ..|+++ +.++|++.+.+ .+++++|+||++||++|+.+.|.|+++++++++ +.|+.+|+++   ...++++|+|+.+|
T Consensus         3 ~~v~~~-~~~~~~~~v~~-~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~---~~~~~~~~~v~~~P   77 (109)
T PRK09381          3 DKIIHL-TDDSFDTDVLK-ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ---NPGTAPKYGIRGIP   77 (109)
T ss_pred             Ccceee-ChhhHHHHHhc-CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCC---ChhHHHhCCCCcCC
Confidence            457777 66899876653 588999999999999999999999999999976 8999999998   45599999999999


Q ss_pred             eEEEeeccccccccccC
Q 018973          198 HFSFYKSMEKIHEEEGI  214 (348)
Q Consensus       198 t~~~~~~g~~v~~~~G~  214 (348)
                      |+++|++|+.+.++.|.
T Consensus        78 t~~~~~~G~~~~~~~G~   94 (109)
T PRK09381         78 TLLLFKNGEVAATKVGA   94 (109)
T ss_pred             EEEEEeCCeEEEEecCC
Confidence            99999999999888774

>PRK10996 thioredoxin 2; Provisional

Probab=99.71  E-value=6e-17  Score=134.91  Aligned_cols=91  Identities=23%  Similarity=0.376  Sum_probs=81.0

Q ss_pred             CCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCC
Q 018973          118 DERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKV  196 (348)
Q Consensus       118 ~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~  196 (348)
                      ++.+.++ +.++|+++++  .+++|+|+|||+||++|+.+.|.|+++++++.+ +.|++||+++   .++++++|+|+++
T Consensus        34 ~~~~i~~-~~~~~~~~i~--~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~---~~~l~~~~~V~~~  107 (139)
T PRK10996         34 DGEVINA-TGETLDKLLQ--DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEA---ERELSARFRIRSI  107 (139)
T ss_pred             CCCCEEc-CHHHHHHHHh--CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCC---CHHHHHhcCCCcc
Confidence            3456665 8899999886  589999999999999999999999999998765 9999999998   4569999999999


Q ss_pred             CeEEEeeccccccccccC
Q 018973          197 PHFSFYKSMEKIHEEEGI  214 (348)
Q Consensus       197 Pt~~~~~~g~~v~~~~G~  214 (348)
                      ||+++|++|+.+.++.|.
T Consensus       108 Ptlii~~~G~~v~~~~G~  125 (139)
T PRK10996        108 PTIMIFKNGQVVDMLNGA  125 (139)
T ss_pred             CEEEEEECCEEEEEEcCC
Confidence            999999999999888774

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=99.71  E-value=3.9e-17  Score=142.92  Aligned_cols=93  Identities=15%  Similarity=0.224  Sum_probs=82.5

Q ss_pred             CCCCCceEecCHHHHHHHHHhcC-CCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcC
Q 018973          116 PRDERVKKVHSIEEFDEALRLAK-NKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIK  194 (348)
Q Consensus       116 ~~~~~v~~v~s~~~f~~~l~~~~-~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~  194 (348)
                      ...+.+.+| |.++|...+.++. +.+|||+||++||++|+.+.|.|++|+++|++++|++||+++      ...+|+|+
T Consensus        79 ~~~G~v~ei-s~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~------~~~~~~i~  151 (192)
T cd02988          79 SKFGEVYEI-SKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQ------CIPNYPDK  151 (192)
T ss_pred             CCCCeEEEe-CHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHH------hHhhCCCC
Confidence            467889999 7788887665543 579999999999999999999999999999999999999886      35799999


Q ss_pred             CCCeEEEeeccccccccccCC
Q 018973          195 KVPHFSFYKSMEKIHEEEGIG  215 (348)
Q Consensus       195 ~~Pt~~~~~~g~~v~~~~G~~  215 (348)
                      .+||+++|++|+.++++.|..
T Consensus       152 ~lPTlliyk~G~~v~~ivG~~  172 (192)
T cd02988         152 NLPTILVYRNGDIVKQFIGLL  172 (192)
T ss_pred             CCCEEEEEECCEEEEEEeCch
Confidence            999999999999999999853

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>TIGR01068 thioredoxin thioredoxin

Probab=99.71  E-value=2.2e-16  Score=123.11  Aligned_cols=98  Identities=27%  Similarity=0.506  Sum_probs=88.3

Q ss_pred             hhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEe
Q 018973          239 KEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIR  318 (348)
Q Consensus       239 ~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~  318 (348)
                      .+++.+.+.+   .+++++|+||++||++|+.+.+.+.++++.+++++.|+.+|+++++.   ++++|+|..+||+++|+
T Consensus         3 ~~~~~~~~~~---~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~---~~~~~~v~~~P~~~~~~   76 (101)
T TIGR01068         3 DANFDETIAS---SDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPD---IAAKYGIRSIPTLLLFK   76 (101)
T ss_pred             HHHHHHHHhh---cCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHH---HHHHcCCCcCCEEEEEe
Confidence            4677777764   36799999999999999999999999999987779999999999887   99999999999999999


Q ss_pred             CCeEEEEEeCC-ChHHHHHHHHHHh
Q 018973          319 DGQIRGRYVGS-GKGELIGEILRYQ  342 (348)
Q Consensus       319 ~G~~v~~~~G~-~~~~L~~~l~~~~  342 (348)
                      +|+.+.++.|. +.++|.++|++.+
T Consensus        77 ~g~~~~~~~g~~~~~~l~~~l~~~~  101 (101)
T TIGR01068        77 NGKEVDRSVGALPKAALKQLINKNL  101 (101)
T ss_pred             CCcEeeeecCCCCHHHHHHHHHhhC
Confidence            99999999999 8899999998753

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=99.71  E-value=1.1e-16  Score=125.45  Aligned_cols=93  Identities=19%  Similarity=0.414  Sum_probs=82.7

Q ss_pred             ChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC---cEEEEEEECCCchhHHHHHHhCCCCccceE
Q 018973          238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG---TVVFARMNGDENDSCMQFLRDMNVVEVPTF  314 (348)
Q Consensus       238 s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~---~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl  314 (348)
                      +.+++++.+.+     ++++|+||++||++|+.+.|.+.++++++.+   ++.++.+|++++..   ++++|+|.++||+
T Consensus         6 ~~~~f~~~~~~-----~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~---~~~~~~v~~~Pt~   77 (102)
T cd03005           6 TEDNFDHHIAE-----GNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRE---LCSEFQVRGYPTL   77 (102)
T ss_pred             CHHHHHHHhhc-----CCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChh---hHhhcCCCcCCEE
Confidence            45678888753     3499999999999999999999999999865   69999999999887   9999999999999


Q ss_pred             EEEeCCeEEEEEeCC-ChHHHHHHH
Q 018973          315 LFIRDGQIRGRYVGS-GKGELIGEI  338 (348)
Q Consensus       315 ~~~~~G~~v~~~~G~-~~~~L~~~l  338 (348)
                      ++|++|+.+.++.|. +.++|.++|
T Consensus        78 ~~~~~g~~~~~~~G~~~~~~l~~~i  102 (102)
T cd03005          78 LLFKDGEKVDKYKGTRDLDSLKEFV  102 (102)
T ss_pred             EEEeCCCeeeEeeCCCCHHHHHhhC
Confidence            999999999999999 888887764

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=99.71  E-value=1.9e-16  Score=127.24  Aligned_cols=92  Identities=14%  Similarity=0.278  Sum_probs=80.2

Q ss_pred             cceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCc
Q 018973          231 SAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVE  310 (348)
Q Consensus       231 ~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~  310 (348)
                      ..+..+.+ ++|.+.+.+. ..+++++|+||++||++|+.+.|.+++++++++ ++.|++||++++ +   ++++|+|.+
T Consensus         4 g~v~~i~~-~~f~~~i~~~-~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~-~v~f~~vd~~~~-~---l~~~~~i~~   76 (113)
T cd02957           4 GEVREISS-KEFLEEVTKA-SKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP-ETKFVKINAEKA-F---LVNYLDIKV   76 (113)
T ss_pred             ceEEEEcH-HHHHHHHHcc-CCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC-CcEEEEEEchhh-H---HHHhcCCCc
Confidence            45566666 8888888753 124899999999999999999999999999996 489999999987 5   999999999


Q ss_pred             cceEEEEeCCeEEEEEeCC
Q 018973          311 VPTFLFIRDGQIRGRYVGS  329 (348)
Q Consensus       311 ~PTl~~~~~G~~v~~~~G~  329 (348)
                      +||+++|++|+.+.++.|.
T Consensus        77 ~Pt~~~f~~G~~v~~~~G~   95 (113)
T cd02957          77 LPTLLVYKNGELIDNIVGF   95 (113)
T ss_pred             CCEEEEEECCEEEEEEecH
Confidence            9999999999999999884

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=99.70  E-value=1.1e-16  Score=127.40  Aligned_cols=97  Identities=16%  Similarity=0.403  Sum_probs=83.0

Q ss_pred             eecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhC------CcEEEEEEECCCchhHHHHHHhCC
Q 018973          234 VQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMA------GTVVFARMNGDENDSCMQFLRDMN  307 (348)
Q Consensus       234 ~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~------~~v~~~~vd~~~~~~~~~l~~~~~  307 (348)
                      ..+ +.++|++.+.    .+++++|+||++||++|+.+.|.+.++++.++      +++.|+++|++++++   ++++|+
T Consensus         4 ~~l-~~~~f~~~i~----~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~---l~~~~~   75 (108)
T cd02996           4 VSL-TSGNIDDILQ----SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESD---IADRYR   75 (108)
T ss_pred             EEc-CHhhHHHHHh----cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHH---HHHhCC
Confidence            344 4678888875    36899999999999999999999999988753      248999999999887   999999


Q ss_pred             CCccceEEEEeCCeE-EEEEeCC-ChHHHHHHH
Q 018973          308 VVEVPTFLFIRDGQI-RGRYVGS-GKGELIGEI  338 (348)
Q Consensus       308 V~~~PTl~~~~~G~~-v~~~~G~-~~~~L~~~l  338 (348)
                      |+++||+++|++|++ ..++.|. +.++|.+||
T Consensus        76 v~~~Ptl~~~~~g~~~~~~~~g~~~~~~l~~fi  108 (108)
T cd02996          76 INKYPTLKLFRNGMMMKREYRGQRSVEALAEFV  108 (108)
T ss_pred             CCcCCEEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence            999999999999984 4777888 888888775

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=99.70  E-value=8.5e-17  Score=126.29  Aligned_cols=85  Identities=14%  Similarity=0.153  Sum_probs=73.0

Q ss_pred             CceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchhHHHHHHHcCcCCCC
Q 018973          120 RVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEKTKELCEREKIKKVP  197 (348)
Q Consensus       120 ~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~~~~l~~~~~V~~~P  197 (348)
                      .|.++ +.++|+++++   +. ++|+|||+||++|+.+.|.|+++++.+.  ++.|++||+++   ..+++++|+|+++|
T Consensus         2 ~v~~l-~~~~f~~~~~---~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~---~~~~~~~~~i~~~P   73 (101)
T cd02994           2 NVVEL-TDSNWTLVLE---GE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ---EPGLSGRFFVTALP   73 (101)
T ss_pred             ceEEc-ChhhHHHHhC---CC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC---CHhHHHHcCCcccC
Confidence            35666 7889998874   44 7899999999999999999999998875  48999999998   45699999999999


Q ss_pred             eEEEeecccccccccc
Q 018973          198 HFSFYKSMEKIHEEEG  213 (348)
Q Consensus       198 t~~~~~~g~~v~~~~G  213 (348)
                      |+++|++|+. .++.|
T Consensus        74 t~~~~~~g~~-~~~~G   88 (101)
T cd02994          74 TIYHAKDGVF-RRYQG   88 (101)
T ss_pred             EEEEeCCCCE-EEecC
Confidence            9999999974 56666

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=99.70  E-value=7.6e-17  Score=126.46  Aligned_cols=88  Identities=22%  Similarity=0.375  Sum_probs=76.5

Q ss_pred             ceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC----CcEEEEEeCCCchhHHHHHHHcCcCCC
Q 018973          121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN----DVEFILVMGDESEKTKELCEREKIKKV  196 (348)
Q Consensus       121 v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~----~v~f~~vd~d~~~~~~~l~~~~~V~~~  196 (348)
                      +.++ +.++|++.+.  .+ +++|+|||+||++|+.+.|.|+++++++.    ++.|++||+++   ..++|++|+|+++
T Consensus         2 ~~~l-~~~~f~~~~~--~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~---~~~~~~~~~v~~~   74 (102)
T cd03005           2 VLEL-TEDNFDHHIA--EG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQ---HRELCSEFQVRGY   74 (102)
T ss_pred             eeEC-CHHHHHHHhh--cC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCC---ChhhHhhcCCCcC
Confidence            3455 7889999996  33 59999999999999999999999999885    38999999998   4569999999999


Q ss_pred             CeEEEeeccccccccccCC
Q 018973          197 PHFSFYKSMEKIHEEEGIG  215 (348)
Q Consensus       197 Pt~~~~~~g~~v~~~~G~~  215 (348)
                      ||+++|++|+.+.++.|..
T Consensus        75 Pt~~~~~~g~~~~~~~G~~   93 (102)
T cd03005          75 PTLLLFKDGEKVDKYKGTR   93 (102)
T ss_pred             CEEEEEeCCCeeeEeeCCC
Confidence            9999999999888888854

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=99.70  E-value=2.2e-16  Score=123.94  Aligned_cols=97  Identities=20%  Similarity=0.359  Sum_probs=83.2

Q ss_pred             eeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchhHHHHHHhCCCCcc
Q 018973          233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDSCMQFLRDMNVVEV  311 (348)
Q Consensus       233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~~~~l~~~~~V~~~  311 (348)
                      +.++ +.++|++.+.     ++ ++|+||++||++|+.+.|.+.++++.+++ ++.++.+|+++++.   ++++|+|.++
T Consensus         3 v~~l-~~~~f~~~~~-----~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~---~~~~~~i~~~   72 (101)
T cd02994           3 VVEL-TDSNWTLVLE-----GE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPG---LSGRFFVTAL   72 (101)
T ss_pred             eEEc-ChhhHHHHhC-----CC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHh---HHHHcCCccc
Confidence            4444 4678887764     23 78999999999999999999999988754 59999999999887   9999999999


Q ss_pred             ceEEEEeCCeEEEEEeCC-ChHHHHHHHHH
Q 018973          312 PTFLFIRDGQIRGRYVGS-GKGELIGEILR  340 (348)
Q Consensus       312 PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~  340 (348)
                      ||++++++|+. .++.|. +.++|.++|++
T Consensus        73 Pt~~~~~~g~~-~~~~G~~~~~~l~~~i~~  101 (101)
T cd02994          73 PTIYHAKDGVF-RRYQGPRDKEDLISFIEE  101 (101)
T ss_pred             CEEEEeCCCCE-EEecCCCCHHHHHHHHhC
Confidence            99999999985 788998 99999998864

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=1e-16  Score=140.50  Aligned_cols=107  Identities=25%  Similarity=0.497  Sum_probs=98.4

Q ss_pred             ceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCcc
Q 018973          232 AVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEV  311 (348)
Q Consensus       232 ~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~  311 (348)
                      +++.+.+..+|+..+...  ..+.++|+|++.||+||+.+.|.+..++.+|+ +..|.+||+|+...   .+..+||...
T Consensus         2 ~Vi~v~~d~df~~~ls~a--g~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp-~aVFlkVdVd~c~~---taa~~gV~am   75 (288)
T KOG0908|consen    2 PVIVVNSDSDFQRELSAA--GGKLVVVDFTASWCGPCKRIAPIFSDLANKYP-GAVFLKVDVDECRG---TAATNGVNAM   75 (288)
T ss_pred             CeEEecCcHHHHHhhhcc--CceEEEEEEEecccchHHhhhhHHHHhhhhCc-ccEEEEEeHHHhhc---hhhhcCcccC
Confidence            466778899999998876  68899999999999999999999999999996 48999999998776   8999999999


Q ss_pred             ceEEEEeCCeEEEEEeCCChHHHHHHHHHHhCC
Q 018973          312 PTFLFIRDGQIRGRYVGSGKGELIGEILRYQGV  344 (348)
Q Consensus       312 PTl~~~~~G~~v~~~~G~~~~~L~~~l~~~~~~  344 (348)
                      |||++|++|..+.++.|+++..|++.+.++.+.
T Consensus        76 PTFiff~ng~kid~~qGAd~~gLe~kv~~~~st  108 (288)
T KOG0908|consen   76 PTFIFFRNGVKIDQIQGADASGLEEKVAKYAST  108 (288)
T ss_pred             ceEEEEecCeEeeeecCCCHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999754

>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]

Probab=99.70  E-value=1.8e-16  Score=142.18  Aligned_cols=193  Identities=15%  Similarity=0.212  Sum_probs=125.7

Q ss_pred             HHHHHHHHHhcC-CCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC----cEEEEEeCCCchhHHHHHHHcCcCCCCeEEE
Q 018973          127 IEEFDEALRLAK-NKLVVVEFAASRSLDSSKIYPFMVDLSRQCND----VEFILVMGDESEKTKELCEREKIKKVPHFSF  201 (348)
Q Consensus       127 ~~~f~~~l~~~~-~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~----v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~  201 (348)
                      .+++++..++.+ +..++|+||||||++||++.|.|.+.--+.++    +++.++|+..   .+.++.++||+++||+.+
T Consensus        30 VeDLddkFkdnkdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~---f~aiAnefgiqGYPTIk~  106 (468)
T KOG4277|consen   30 VEDLDDKFKDNKDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATR---FPAIANEFGIQGYPTIKF  106 (468)
T ss_pred             hhhhhHHhhhcccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeeccccccc---chhhHhhhccCCCceEEE
Confidence            355555555444 68999999999999999999999998776654    8999999999   556999999999999999


Q ss_pred             eeccccccccccCCCCcccccccccCCCccceeecCCh--hhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHH
Q 018973          202 YKSMEKIHEEEGIGPDQLMGDVLYYGDSHSAVVQLHSK--EDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLS  279 (348)
Q Consensus       202 ~~~g~~v~~~~G~~~~~l~~~v~~~~~~~~~v~~~~s~--~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la  279 (348)
                      |++|-.++.-.|...+.+.....++   ...+++....  ..+..+-+    ..++.+|+|++..-|--    ..+.+.+
T Consensus       107 ~kgd~a~dYRG~R~Kd~iieFAhR~---a~aiI~pi~enQ~~fehlq~----Rhq~ffVf~Gtge~PL~----d~fidAA  175 (468)
T KOG4277|consen  107 FKGDHAIDYRGGREKDAIIEFAHRC---AAAIIEPINENQIEFEHLQA----RHQPFFVFFGTGEGPLF----DAFIDAA  175 (468)
T ss_pred             ecCCeeeecCCCccHHHHHHHHHhc---ccceeeecChhHHHHHHHhh----ccCceEEEEeCCCCcHH----HHHHHHh
Confidence            9999888766666677666543333   3344444333  23333333    36888888886543321    1233333


Q ss_pred             HHhCCcEEEEEEECCCchhHHHHH-HhCCCCccceEEEEeCCeEEEEEeCCChHHHHHHHHHH
Q 018973          280 RQMAGTVVFARMNGDENDSCMQFL-RDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRY  341 (348)
Q Consensus       280 ~~~~~~v~~~~vd~~~~~~~~~l~-~~~~V~~~PTl~~~~~G~~v~~~~G~~~~~L~~~l~~~  341 (348)
                      .+   ++.+.+.-....+    ++ ..-.....|.+.+|++..-.-.. ..+.++|.+|+.+-
T Consensus       176 Se---~~~~a~FfSasee----VaPe~~~~kempaV~VFKDetf~i~d-e~dd~dLseWinRE  230 (468)
T KOG4277|consen  176 SE---KFSVARFFSASEE----VAPEENDAKEMPAVAVFKDETFEIED-EGDDEDLSEWINRE  230 (468)
T ss_pred             hh---heeeeeeeccccc----cCCcccchhhccceEEEccceeEEEe-cCchhHHHHHHhHh
Confidence            33   3433333221111    11 12234568999999987432222 22667888888764

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=99.69  E-value=3.2e-16  Score=130.97  Aligned_cols=99  Identities=22%  Similarity=0.381  Sum_probs=84.6

Q ss_pred             hhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEE-e
Q 018973          240 EDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFI-R  318 (348)
Q Consensus       240 ~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~-~  318 (348)
                      .++++.+.    .+++++|+||++||++|+.+.|.+.++++.+.+++.|+.||++... ..+++++|+|.++||+++| +
T Consensus        11 ~~~~~a~~----~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~-~~~~~~~~~V~~iPt~v~~~~   85 (142)
T cd02950          11 TPPEVALS----NGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK-WLPEIDRYRVDGIPHFVFLDR   85 (142)
T ss_pred             CCHHHHHh----CCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc-cHHHHHHcCCCCCCEEEEECC
Confidence            34555544    4799999999999999999999999999999777889999988653 1348999999999999999 5


Q ss_pred             CCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973          319 DGQIRGRYVGS-GKGELIGEILRYQG  343 (348)
Q Consensus       319 ~G~~v~~~~G~-~~~~L~~~l~~~~~  343 (348)
                      +|+++.++.|. +.++|.+.|++++.
T Consensus        86 ~G~~v~~~~G~~~~~~l~~~l~~l~~  111 (142)
T cd02950          86 EGNEEGQSIGLQPKQVLAQNLDALVA  111 (142)
T ss_pred             CCCEEEEEeCCCCHHHHHHHHHHHHc
Confidence            89999999999 88999999998763

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=99.69  E-value=2.4e-16  Score=125.26  Aligned_cols=95  Identities=19%  Similarity=0.388  Sum_probs=83.6

Q ss_pred             ChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCC--chhHHHHHHhCCCCccceEE
Q 018973          238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDE--NDSCMQFLRDMNVVEVPTFL  315 (348)
Q Consensus       238 s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~--~~~~~~l~~~~~V~~~PTl~  315 (348)
                      +.+++++.+.+   .+++++|+||++||++|+.+.|.+.++++.+.+.+.++.+|+++  +.+   ++++|+|.++||++
T Consensus         6 ~~~~~~~~i~~---~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~---~~~~~~i~~~Pt~~   79 (109)
T cd03002           6 TPKNFDKVVHN---TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKP---LCGKYGVQGFPTLK   79 (109)
T ss_pred             chhhHHHHHhc---CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHH---HHHHcCCCcCCEEE
Confidence            45678888875   47889999999999999999999999999998779999999998  555   99999999999999


Q ss_pred             EEeCCe-----EEEEEeCC-ChHHHHHHH
Q 018973          316 FIRDGQ-----IRGRYVGS-GKGELIGEI  338 (348)
Q Consensus       316 ~~~~G~-----~v~~~~G~-~~~~L~~~l  338 (348)
                      +|++|+     ....+.|. +.++|.+||
T Consensus        80 ~~~~~~~~~~~~~~~~~G~~~~~~l~~fi  108 (109)
T cd03002          80 VFRPPKKASKHAVEDYNGERSAKAIVDFV  108 (109)
T ss_pred             EEeCCCcccccccccccCccCHHHHHHHh
Confidence            998885     45678888 999999887

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=99.69  E-value=2.2e-16  Score=125.48  Aligned_cols=83  Identities=20%  Similarity=0.357  Sum_probs=72.9

Q ss_pred             ceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCeE
Q 018973          121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPHF  199 (348)
Q Consensus       121 v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~  199 (348)
                      +.++ +.++|++.+.+ .+++++|+|||+||++|+.+.|.|+++++++.+ +.|+.||+++.+ ..+++++|+|+++||+
T Consensus         2 v~~l-~~~~~~~~i~~-~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~-~~~~~~~~~i~~~Pt~   78 (109)
T cd03002           2 VYEL-TPKNFDKVVHN-TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDK-NKPLCGKYGVQGFPTL   78 (109)
T ss_pred             eEEc-chhhHHHHHhc-CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccc-cHHHHHHcCCCcCCEE
Confidence            3455 78899999875 588999999999999999999999999999876 899999998733 3569999999999999


Q ss_pred             EEeeccc
Q 018973          200 SFYKSME  206 (348)
Q Consensus       200 ~~~~~g~  206 (348)
                      ++|++|+
T Consensus        79 ~~~~~~~   85 (109)
T cd03002          79 KVFRPPK   85 (109)
T ss_pred             EEEeCCC
Confidence            9999886

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=99.68  E-value=3.9e-16  Score=131.30  Aligned_cols=92  Identities=13%  Similarity=0.240  Sum_probs=79.9

Q ss_pred             ceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchhHHHHHHhCCCCc
Q 018973          232 AVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDSCMQFLRDMNVVE  310 (348)
Q Consensus       232 ~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~~~~l~~~~~V~~  310 (348)
                      .+..+ +.++|++.+...  .+++++|+||++||++|+.+.|.++++++++.+ ++.|++||++++++   ++++|+|.+
T Consensus        29 ~v~~l-~~~~f~~~l~~~--~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~---la~~~~V~~  102 (152)
T cd02962          29 HIKYF-TPKTLEEELERD--KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPN---VAEKFRVST  102 (152)
T ss_pred             ccEEc-CHHHHHHHHHhc--CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHH---HHHHcCcee
Confidence            34444 457788887643  467999999999999999999999999999864 59999999999987   999999988


Q ss_pred             ------cceEEEEeCCeEEEEEeCC
Q 018973          311 ------VPTFLFIRDGQIRGRYVGS  329 (348)
Q Consensus       311 ------~PTl~~~~~G~~v~~~~G~  329 (348)
                            +||+++|++|+.+.++.|.
T Consensus       103 ~~~v~~~PT~ilf~~Gk~v~r~~G~  127 (152)
T cd02962         103 SPLSKQLPTIILFQGGKEVARRPYY  127 (152)
T ss_pred             cCCcCCCCEEEEEECCEEEEEEecc
Confidence                  9999999999999999973

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=99.68  E-value=2.6e-16  Score=126.60  Aligned_cols=96  Identities=20%  Similarity=0.263  Sum_probs=78.1

Q ss_pred             CceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC---C-cEEEEEeCCCchhHHHHHHHcCcCC
Q 018973          120 RVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN---D-VEFILVMGDESEKTKELCEREKIKK  195 (348)
Q Consensus       120 ~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~---~-v~f~~vd~d~~~~~~~l~~~~~V~~  195 (348)
                      .+.++ +.++|++.+.+. +++|+|+|||+||++|+.+.|.|+++++++.   + +.|+++|++... ..+++++|+|++
T Consensus         2 ~v~~l-~~~~f~~~i~~~-~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~-~~~~~~~~~i~~   78 (114)
T cd02992           2 PVIVL-DAASFNSALLGS-PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE-NVALCRDFGVTG   78 (114)
T ss_pred             CeEEC-CHHhHHHHHhcC-CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh-hHHHHHhCCCCC
Confidence            35566 789999998864 4899999999999999999999999999764   3 889999986432 467999999999


Q ss_pred             CCeEEEeeccccccccccCCCCcc
Q 018973          196 VPHFSFYKSMEKIHEEEGIGPDQL  219 (348)
Q Consensus       196 ~Pt~~~~~~g~~v~~~~G~~~~~l  219 (348)
                      +||+++|++|+ .....|...+..
T Consensus        79 ~Pt~~lf~~~~-~~~~~~~~~~~~  101 (114)
T cd02992          79 YPTLRYFPPFS-KEATDGLKQEGP  101 (114)
T ss_pred             CCEEEEECCCC-ccCCCCCcccCC
Confidence            99999999988 555555444443

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=99.68  E-value=5.5e-16  Score=120.94  Aligned_cols=92  Identities=25%  Similarity=0.447  Sum_probs=82.7

Q ss_pred             HHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCe
Q 018973          242 VEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQ  321 (348)
Q Consensus       242 ~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~  321 (348)
                      ++..+.+   .+++++++||++||+.|+.+.|.+.++++++.+++.++.+|+++.++   ++++++|.++||+++|++|+
T Consensus         5 ~~~~~~~---~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~---l~~~~~v~~vPt~~i~~~g~   78 (97)
T cd02949           5 LRKLYHE---SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQE---IAEAAGIMGTPTVQFFKDKE   78 (97)
T ss_pred             HHHHHHh---CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHH---HHHHCCCeeccEEEEEECCe
Confidence            4445554   48999999999999999999999999999998789999999999887   99999999999999999999


Q ss_pred             EEEEEeCC-ChHHHHHHHH
Q 018973          322 IRGRYVGS-GKGELIGEIL  339 (348)
Q Consensus       322 ~v~~~~G~-~~~~L~~~l~  339 (348)
                      .+.++.|. +.++|.++|+
T Consensus        79 ~v~~~~g~~~~~~~~~~l~   97 (97)
T cd02949          79 LVKEISGVKMKSEYREFIE   97 (97)
T ss_pred             EEEEEeCCccHHHHHHhhC
Confidence            99999999 8888888763

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=99.67  E-value=2e-16  Score=132.13  Aligned_cols=87  Identities=23%  Similarity=0.358  Sum_probs=74.8

Q ss_pred             HHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCeEEEee-c
Q 018973          127 IEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPHFSFYK-S  204 (348)
Q Consensus       127 ~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~-~  204 (348)
                      ..+|++.+.  ++++|||+|||+||++|+.+.|.|++++++|.+ +.|+.||+|... ..+++++|+|+++||+++|. +
T Consensus        10 ~~~~~~a~~--~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~-~~~~~~~~~V~~iPt~v~~~~~   86 (142)
T cd02950          10 STPPEVALS--NGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK-WLPEIDRYRVDGIPHFVFLDRE   86 (142)
T ss_pred             cCCHHHHHh--CCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc-cHHHHHHcCCCCCCEEEEECCC
Confidence            455666665  789999999999999999999999999999975 889999988632 35789999999999999994 8


Q ss_pred             cccccccccCCC
Q 018973          205 MEKIHEEEGIGP  216 (348)
Q Consensus       205 g~~v~~~~G~~~  216 (348)
                      |+.+.++.|...
T Consensus        87 G~~v~~~~G~~~   98 (142)
T cd02950          87 GNEEGQSIGLQP   98 (142)
T ss_pred             CCEEEEEeCCCC
Confidence            999999998653

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=99.67  E-value=6.6e-16  Score=121.47  Aligned_cols=94  Identities=24%  Similarity=0.505  Sum_probs=82.7

Q ss_pred             ChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhC--CcEEEEEEECCC--chhHHHHHHhCCCCccce
Q 018973          238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMA--GTVVFARMNGDE--NDSCMQFLRDMNVVEVPT  313 (348)
Q Consensus       238 s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~--~~v~~~~vd~~~--~~~~~~l~~~~~V~~~PT  313 (348)
                      +.+++++.+++    +++++|+||++||++|+.+.|.+.++++.+.  +.+.++.+|+++  ++.   ++++|+|.++||
T Consensus         6 ~~~~~~~~~~~----~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~---~~~~~~i~~~Pt   78 (104)
T cd02997           6 TDEDFRKFLKK----EKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDA---LKEEYNVKGFPT   78 (104)
T ss_pred             chHhHHHHHhh----CCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHH---HHHhCCCccccE
Confidence            34578877764    5699999999999999999999999999886  558999999988  665   999999999999


Q ss_pred             EEEEeCCeEEEEEeCC-ChHHHHHHH
Q 018973          314 FLFIRDGQIRGRYVGS-GKGELIGEI  338 (348)
Q Consensus       314 l~~~~~G~~v~~~~G~-~~~~L~~~l  338 (348)
                      +++|++|+.+.++.|. +.++|.++|
T Consensus        79 ~~~~~~g~~~~~~~g~~~~~~l~~~l  104 (104)
T cd02997          79 FKYFENGKFVEKYEGERTAEDIIEFM  104 (104)
T ss_pred             EEEEeCCCeeEEeCCCCCHHHHHhhC
Confidence            9999999999999998 888888764

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=99.67  E-value=3.6e-16  Score=139.57  Aligned_cols=98  Identities=16%  Similarity=0.203  Sum_probs=83.1

Q ss_pred             CCceEecCHHHHHHHHHhc---CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcC
Q 018973          119 ERVKKVHSIEEFDEALRLA---KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIK  194 (348)
Q Consensus       119 ~~v~~v~s~~~f~~~l~~~---~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~  194 (348)
                      ..+.++ +.++|++.+...   .+++++|+|||+||++|+.+.|.|+++++++++ +.|+++|+++   .++++++|+|+
T Consensus        30 ~~Vv~L-t~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~---~~~l~~~~~I~  105 (224)
T PTZ00443         30 NALVLL-NDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATR---ALNLAKRFAIK  105 (224)
T ss_pred             CCcEEC-CHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcc---cHHHHHHcCCC
Confidence            456776 899999988643   368999999999999999999999999999987 8999999998   56699999999


Q ss_pred             CCCeEEEeecccccccccc-CCCCccc
Q 018973          195 KVPHFSFYKSMEKIHEEEG-IGPDQLM  220 (348)
Q Consensus       195 ~~Pt~~~~~~g~~v~~~~G-~~~~~l~  220 (348)
                      ++||+++|++|+.+....| ...+.+.
T Consensus       106 ~~PTl~~f~~G~~v~~~~G~~s~e~L~  132 (224)
T PTZ00443        106 GYPTLLLFDKGKMYQYEGGDRSTEKLA  132 (224)
T ss_pred             cCCEEEEEECCEEEEeeCCCCCHHHHH
Confidence            9999999999988876666 3334443

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=99.66  E-value=8.7e-16  Score=137.13  Aligned_cols=108  Identities=19%  Similarity=0.292  Sum_probs=93.8

Q ss_pred             ceeecCChhhHHHHhhhcc-cCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCc
Q 018973          232 AVVQLHSKEDVEKLIDDHK-VDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVE  310 (348)
Q Consensus       232 ~v~~~~s~~~~~~~l~~~~-~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~  310 (348)
                      .+.++ +.++|++.+.... ..+++++|+||++||++|+.+.|.++++++++++.+.|+.+|++++++   ++++|+|.+
T Consensus        31 ~Vv~L-t~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~---l~~~~~I~~  106 (224)
T PTZ00443         31 ALVLL-NDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALN---LAKRFAIKG  106 (224)
T ss_pred             CcEEC-CHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHH---HHHHcCCCc
Confidence            34555 5678998876431 135899999999999999999999999999998889999999999887   999999999


Q ss_pred             cceEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973          311 VPTFLFIRDGQIRGRYVGS-GKGELIGEILRYQG  343 (348)
Q Consensus       311 ~PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~  343 (348)
                      +||+++|++|+.+.+..|. +.++|.+++.+...
T Consensus       107 ~PTl~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~  140 (224)
T PTZ00443        107 YPTLLLFDKGKMYQYEGGDRSTEKLAAFALGDFK  140 (224)
T ss_pred             CCEEEEEECCEEEEeeCCCCCHHHHHHHHHHHHH
Confidence            9999999999998888887 99999999988753

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=99.66  E-value=4.4e-16  Score=125.34  Aligned_cols=87  Identities=21%  Similarity=0.277  Sum_probs=75.9

Q ss_pred             EecCHHHHHHHHHhcCCCEEEEEEeC-------CCCHHHHhhhhHHHHHHHHcC-CcEEEEEeCCCch----hHHHHHHH
Q 018973          123 KVHSIEEFDEALRLAKNKLVVVEFAA-------SRSLDSSKIYPFMVDLSRQCN-DVEFILVMGDESE----KTKELCER  190 (348)
Q Consensus       123 ~v~s~~~f~~~l~~~~~k~vvV~F~a-------~wC~~C~~~~p~l~~la~~~~-~v~f~~vd~d~~~----~~~~l~~~  190 (348)
                      .+.+.++|.+.+...++++|+|+|||       +||+||+.+.|.+++++++++ ++.|++||+++.+    ...++..+
T Consensus         5 ~~~~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~   84 (119)
T cd02952           5 AVRGYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTD   84 (119)
T ss_pred             cccCHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhc
Confidence            35688999999987678999999999       999999999999999999998 5999999998742    13579999


Q ss_pred             cCcC-CCCeEEEeecccccc
Q 018973          191 EKIK-KVPHFSFYKSMEKIH  209 (348)
Q Consensus       191 ~~V~-~~Pt~~~~~~g~~v~  209 (348)
                      |+|. ++||+++|++|+.+.
T Consensus        85 ~~I~~~iPT~~~~~~~~~l~  104 (119)
T cd02952          85 PKLTTGVPTLLRWKTPQRLV  104 (119)
T ss_pred             cCcccCCCEEEEEcCCceec
Confidence            9998 999999998876554

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=99.66  E-value=9.5e-16  Score=119.94  Aligned_cols=96  Identities=18%  Similarity=0.399  Sum_probs=85.9

Q ss_pred             hhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC--cEEEEEEECCCchhHHHHHHhCCCCccceEEE
Q 018973          239 KEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG--TVVFARMNGDENDSCMQFLRDMNVVEVPTFLF  316 (348)
Q Consensus       239 ~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~  316 (348)
                      .+++++.+.    .+++++|+||++||++|+.+.+.+.++++.+.+  ++.++.+|++++.+   ++++|+|.++|++++
T Consensus         3 ~~~~~~~~~----~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~~i~~~P~~~~   75 (102)
T TIGR01126         3 ASNFDDIVL----SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKD---LASRFGVSGFPTIKF   75 (102)
T ss_pred             hhhHHHHhc----cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHH---HHHhCCCCcCCEEEE
Confidence            466777775    478999999999999999999999999999875  69999999999887   999999999999999


Q ss_pred             EeCCeEEEEEeCC-ChHHHHHHHHHH
Q 018973          317 IRDGQIRGRYVGS-GKGELIGEILRY  341 (348)
Q Consensus       317 ~~~G~~v~~~~G~-~~~~L~~~l~~~  341 (348)
                      |++|+.+.++.|. +.++|..+|+++
T Consensus        76 ~~~~~~~~~~~g~~~~~~l~~~i~~~  101 (102)
T TIGR01126        76 FPKGKKPVDYEGGRDLEAIVEFVNEK  101 (102)
T ss_pred             ecCCCcceeecCCCCHHHHHHHHHhc
Confidence            9888767889999 899999999875

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=99.66  E-value=9.9e-16  Score=120.31  Aligned_cols=95  Identities=17%  Similarity=0.353  Sum_probs=83.8

Q ss_pred             ChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEE
Q 018973          238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFI  317 (348)
Q Consensus       238 s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~  317 (348)
                      +.+++++.+.+.   +++++|+||++||++|+.+.|.|.++++++.+++.|+.+|++++++   ++++|+|+++||+++|
T Consensus         6 ~~~~~~~~i~~~---~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~---~~~~~~i~~~P~~~~~   79 (103)
T cd03001           6 TDSNFDKKVLNS---DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQS---LAQQYGVRGFPTIKVF   79 (103)
T ss_pred             CHHhHHHHHhcC---CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHH---HHHHCCCCccCEEEEE
Confidence            557788887653   6789999999999999999999999999998789999999999887   9999999999999999


Q ss_pred             eCC-eEEEEEeCC-ChHHHHHHH
Q 018973          318 RDG-QIRGRYVGS-GKGELIGEI  338 (348)
Q Consensus       318 ~~G-~~v~~~~G~-~~~~L~~~l  338 (348)
                      ++| +....+.|. +.++|.+|+
T Consensus        80 ~~~~~~~~~~~g~~~~~~l~~~~  102 (103)
T cd03001          80 GAGKNSPQDYQGGRTAKAIVSAA  102 (103)
T ss_pred             CCCCcceeecCCCCCHHHHHHHh
Confidence            988 555677888 899998886

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=99.66  E-value=9.6e-16  Score=120.39  Aligned_cols=88  Identities=16%  Similarity=0.234  Sum_probs=74.9

Q ss_pred             ceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCeE
Q 018973          121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPHF  199 (348)
Q Consensus       121 v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~  199 (348)
                      |.++ +.++|++.+.+ .+++++|+||++||++|+.+.|.|.++++++.+ +.|+.+|+++   ..+++++|+|+++||+
T Consensus         2 v~~l-~~~~~~~~i~~-~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~---~~~~~~~~~i~~~P~~   76 (103)
T cd03001           2 VVEL-TDSNFDKKVLN-SDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADV---HQSLAQQYGVRGFPTI   76 (103)
T ss_pred             eEEc-CHHhHHHHHhc-CCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcc---hHHHHHHCCCCccCEE
Confidence            4455 78899998874 467899999999999999999999999999865 8999999998   5669999999999999


Q ss_pred             EEeecc-cccccccc
Q 018973          200 SFYKSM-EKIHEEEG  213 (348)
Q Consensus       200 ~~~~~g-~~v~~~~G  213 (348)
                      ++|++| +....+.|
T Consensus        77 ~~~~~~~~~~~~~~g   91 (103)
T cd03001          77 KVFGAGKNSPQDYQG   91 (103)
T ss_pred             EEECCCCcceeecCC
Confidence            999988 33444544

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=99.65  E-value=2.5e-15  Score=129.73  Aligned_cols=105  Identities=16%  Similarity=0.313  Sum_probs=87.7

Q ss_pred             ccceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCC
Q 018973          230 HSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVV  309 (348)
Q Consensus       230 ~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~  309 (348)
                      +..+..+.+.++|.+.+... ..+.++||+||++||++|+.+.|.|.+++.+++ .++|++||+++. .   ++.+|+|.
T Consensus        61 ~g~v~ei~~~~~f~~~v~~~-~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~~-~---l~~~f~v~  134 (175)
T cd02987          61 FGKVYELDSGEQFLDAIDKE-GKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASAT-G---ASDEFDTD  134 (175)
T ss_pred             CCeEEEcCCHHHHHHHHHhc-CCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccch-h---hHHhCCCC
Confidence            55677787768888888653 124599999999999999999999999999996 599999999986 4   99999999


Q ss_pred             ccceEEEEeCCeEEEEEeCC--------ChHHHHHHHHH
Q 018973          310 EVPTFLFIRDGQIRGRYVGS--------GKGELIGEILR  340 (348)
Q Consensus       310 ~~PTl~~~~~G~~v~~~~G~--------~~~~L~~~l~~  340 (348)
                      .+||+++|++|+.+.++.|.        +.+.|..+|.+
T Consensus       135 ~vPTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~  173 (175)
T cd02987         135 ALPALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVE  173 (175)
T ss_pred             CCCEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHh
Confidence            99999999999999998875        34556655543

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=99.65  E-value=8.9e-16  Score=120.70  Aligned_cols=90  Identities=23%  Similarity=0.308  Sum_probs=77.0

Q ss_pred             ceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC--C-cEEEEEeCCCchhHHHHHHHcCcCCCC
Q 018973          121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN--D-VEFILVMGDESEKTKELCEREKIKKVP  197 (348)
Q Consensus       121 v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~--~-v~f~~vd~d~~~~~~~l~~~~~V~~~P  197 (348)
                      +.++ +.++|++.++  ++++++|+|||+||++|+.+.|.++++++++.  + +.|+++|+++.. ..+++++|+|+++|
T Consensus         2 ~~~l-~~~~~~~~~~--~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~~~~~~~~i~~~P   77 (104)
T cd02997           2 VVHL-TDEDFRKFLK--KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPE-HDALKEEYNVKGFP   77 (104)
T ss_pred             eEEe-chHhHHHHHh--hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCc-cHHHHHhCCCcccc
Confidence            4455 6779999887  56799999999999999999999999998875  3 889999998732 45699999999999


Q ss_pred             eEEEeeccccccccccC
Q 018973          198 HFSFYKSMEKIHEEEGI  214 (348)
Q Consensus       198 t~~~~~~g~~v~~~~G~  214 (348)
                      |+++|++|+.+.++.|.
T Consensus        78 t~~~~~~g~~~~~~~g~   94 (104)
T cd02997          78 TFKYFENGKFVEKYEGE   94 (104)
T ss_pred             EEEEEeCCCeeEEeCCC
Confidence            99999999988877773

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=99.64  E-value=7.4e-16  Score=121.68  Aligned_cols=95  Identities=20%  Similarity=0.311  Sum_probs=80.4

Q ss_pred             hhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHH---HHHHHHhCCcEEEEEEECCCchh-HHHHHHhCCCCccceEE
Q 018973          240 EDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTV---IKLSRQMAGTVVFARMNGDENDS-CMQFLRDMNVVEVPTFL  315 (348)
Q Consensus       240 ~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~~~~~~-~~~l~~~~~V~~~PTl~  315 (348)
                      +++.+.++    .+++++|+||++||++|+.+.+.+   .++++.+.+++.++.+|+++++. ..+++++|+|.++||++
T Consensus         2 ~~~~~~~~----~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~   77 (104)
T cd02953           2 AALAQALA----QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYL   77 (104)
T ss_pred             HHHHHHHH----cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEE
Confidence            35566654    479999999999999999999887   67888886679999999986432 35699999999999999


Q ss_pred             EEe--CCeEEEEEeCC-ChHHHHHHH
Q 018973          316 FIR--DGQIRGRYVGS-GKGELIGEI  338 (348)
Q Consensus       316 ~~~--~G~~v~~~~G~-~~~~L~~~l  338 (348)
                      +|+  +|+.+.++.|. +.++|.++|
T Consensus        78 ~~~~~~g~~~~~~~G~~~~~~l~~~l  103 (104)
T cd02953          78 FYGPGGEPEPLRLPGFLTADEFLEAL  103 (104)
T ss_pred             EECCCCCCCCcccccccCHHHHHHHh
Confidence            997  79999999999 999988876

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=99.64  E-value=2.7e-15  Score=120.46  Aligned_cols=89  Identities=24%  Similarity=0.277  Sum_probs=78.8

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEE--EEeCC
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRG--RYVGS  329 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~--~~~G~  329 (348)
                      .+..++|+||++||++|+.+.|.+++++..+ +++.|..+|++++++   ++++|+|.++||+++|++|....  ++.|.
T Consensus        21 ~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~~---l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~   96 (113)
T cd02975          21 NPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDKE---KAEKYGVERVPTTIFLQDGGKDGGIRYYGL   96 (113)
T ss_pred             CCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCHH---HHHHcCCCcCCEEEEEeCCeecceEEEEec
Confidence            4677999999999999999999999999887 569999999999887   99999999999999999876554  78898


Q ss_pred             -ChHHHHHHHHHHhCC
Q 018973          330 -GKGELIGEILRYQGV  344 (348)
Q Consensus       330 -~~~~L~~~l~~~~~~  344 (348)
                       +..+|.++|...+..
T Consensus        97 ~~~~el~~~i~~i~~~  112 (113)
T cd02975          97 PAGYEFASLIEDIVRV  112 (113)
T ss_pred             CchHHHHHHHHHHHhc
Confidence             889999999887653

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=99.64  E-value=1.2e-15  Score=120.50  Aligned_cols=85  Identities=18%  Similarity=0.233  Sum_probs=73.0

Q ss_pred             HHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHH---HHHHHHcC-CcEEEEEeCCCch-hHHHHHHHcCcCCCCeEEEe
Q 018973          128 EEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFM---VDLSRQCN-DVEFILVMGDESE-KTKELCEREKIKKVPHFSFY  202 (348)
Q Consensus       128 ~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l---~~la~~~~-~v~f~~vd~d~~~-~~~~l~~~~~V~~~Pt~~~~  202 (348)
                      ++|+++++  .+++|+|+||++||++|+.+.|.+   +++++.+. ++.++.||+++.+ ...+++++|+|+++||+++|
T Consensus         2 ~~~~~~~~--~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~   79 (104)
T cd02953           2 AALAQALA--QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFY   79 (104)
T ss_pred             HHHHHHHH--cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEE
Confidence            57888886  689999999999999999999988   67888777 5999999987633 24689999999999999999


Q ss_pred             e--ccccccccccC
Q 018973          203 K--SMEKIHEEEGI  214 (348)
Q Consensus       203 ~--~g~~v~~~~G~  214 (348)
                      +  +|+.+.++.|.
T Consensus        80 ~~~~g~~~~~~~G~   93 (104)
T cd02953          80 GPGGEPEPLRLPGF   93 (104)
T ss_pred             CCCCCCCCcccccc
Confidence            8  78988888774

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=99.64  E-value=2.7e-15  Score=118.56  Aligned_cols=93  Identities=16%  Similarity=0.344  Sum_probs=79.3

Q ss_pred             hhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhC---CcEEEEEEECCCchhHHHHHHhCCCCccceEEE
Q 018973          240 EDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMA---GTVVFARMNGDENDSCMQFLRDMNVVEVPTFLF  316 (348)
Q Consensus       240 ~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~---~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~  316 (348)
                      +++++. .    .+++++|.||++||++|+.+.|.|.+++++++   ..+.++.+|+++.++   ++++|+|.++||+++
T Consensus         7 ~~~~~~-~----~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~---~~~~~~I~~~Pt~~l   78 (104)
T cd03000           7 DSFKDV-R----KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSS---IASEFGVRGYPTIKL   78 (104)
T ss_pred             hhhhhh-c----cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHh---HHhhcCCccccEEEE
Confidence            555553 2    35799999999999999999999999999984   348999999998877   999999999999999


Q ss_pred             EeCCeEEEEEeCC-ChHHHHHHHHHH
Q 018973          317 IRDGQIRGRYVGS-GKGELIGEILRY  341 (348)
Q Consensus       317 ~~~G~~v~~~~G~-~~~~L~~~l~~~  341 (348)
                      |++|. ..++.|. +.++|.+++++.
T Consensus        79 ~~~~~-~~~~~G~~~~~~l~~~~~~~  103 (104)
T cd03000          79 LKGDL-AYNYRGPRTKDDIVEFANRV  103 (104)
T ss_pred             EcCCC-ceeecCCCCHHHHHHHHHhh
Confidence            98774 4678888 999999999864

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=99.64  E-value=3.8e-15  Score=121.12  Aligned_cols=97  Identities=21%  Similarity=0.286  Sum_probs=79.4

Q ss_pred             CChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch--------hHHHHHHhCCC
Q 018973          237 HSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND--------SCMQFLRDMNV  308 (348)
Q Consensus       237 ~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~--------~~~~l~~~~~V  308 (348)
                      .+.+++.+.++    +++.++|+||++||++|+.+.|.|.+++++.  ++.++.+|++.++        +..++.++|++
T Consensus        11 it~~~~~~~i~----~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~--~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i   84 (122)
T TIGR01295        11 TTVVRALEALD----KKETATFFIGRKTCPYCRKFSGTLSGVVAQT--KAPIYYIDSENNGSFEMSSLNDLTAFRSRFGI   84 (122)
T ss_pred             cCHHHHHHHHH----cCCcEEEEEECCCChhHHHHhHHHHHHHHhc--CCcEEEEECCCccCcCcccHHHHHHHHHHcCC
Confidence            35677888887    3688999999999999999999999999984  4678888887542        34567788765


Q ss_pred             ----CccceEEEEeCCeEEEEEeCC--ChHHHHHHHH
Q 018973          309 ----VEVPTFLFIRDGQIRGRYVGS--GKGELIGEIL  339 (348)
Q Consensus       309 ----~~~PTl~~~~~G~~v~~~~G~--~~~~L~~~l~  339 (348)
                          .++||+++|++|+.+.+..|.  +.++|.+++.
T Consensus        85 ~~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~  121 (122)
T TIGR01295        85 PTSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIAA  121 (122)
T ss_pred             cccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence                459999999999999999995  6888888764

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=99.63  E-value=2e-15  Score=120.42  Aligned_cols=91  Identities=14%  Similarity=0.158  Sum_probs=74.1

Q ss_pred             CceEecCHHHHHHHHHh-cCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCCCchhHHHHHH-HcCcCC
Q 018973          120 RVKKVHSIEEFDEALRL-AKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGDESEKTKELCE-REKIKK  195 (348)
Q Consensus       120 ~v~~v~s~~~f~~~l~~-~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d~~~~~~~l~~-~~~V~~  195 (348)
                      .|+++ +.++|+.++.. ..+++|+|+||++||++|+.+.|.|+++++++.+  +.|+.||+|..  ...+++ .|+|+.
T Consensus         2 ~v~~~-~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~--~~~~~~~~~~v~~   78 (109)
T cd02993           2 AVVTL-SRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGE--QREFAKEELQLKS   78 (109)
T ss_pred             cceec-cHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCcc--chhhHHhhcCCCc
Confidence            35566 78899988753 3579999999999999999999999999999864  89999999873  235786 599999


Q ss_pred             CCeEEEeeccc-ccccccc
Q 018973          196 VPHFSFYKSME-KIHEEEG  213 (348)
Q Consensus       196 ~Pt~~~~~~g~-~v~~~~G  213 (348)
                      +||+++|++|. ....+.|
T Consensus        79 ~Pti~~f~~~~~~~~~y~g   97 (109)
T cd02993          79 FPTILFFPKNSRQPIKYPS   97 (109)
T ss_pred             CCEEEEEcCCCCCceeccC
Confidence            99999997753 4555555

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=99.62  E-value=2.7e-15  Score=122.00  Aligned_cols=90  Identities=12%  Similarity=0.106  Sum_probs=74.6

Q ss_pred             ceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCch--------hHHHHHHHcC
Q 018973          121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESE--------KTKELCEREK  192 (348)
Q Consensus       121 v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~--------~~~~l~~~~~  192 (348)
                      ...+ +.++|.+.++  .++.++|+|+++||++|+.+.|.|++++++ .++.|+.||+|..+        +..++.++|+
T Consensus         8 ~~~i-t~~~~~~~i~--~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~-~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~   83 (122)
T TIGR01295         8 LEVT-TVVRALEALD--KKETATFFIGRKTCPYCRKFSGTLSGVVAQ-TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFG   83 (122)
T ss_pred             ceec-CHHHHHHHHH--cCCcEEEEEECCCChhHHHHhHHHHHHHHh-cCCcEEEEECCCccCcCcccHHHHHHHHHHcC
Confidence            3444 7889999997  688899999999999999999999999998 45788888888432        3456777766


Q ss_pred             c----CCCCeEEEeeccccccccccC
Q 018973          193 I----KKVPHFSFYKSMEKIHEEEGI  214 (348)
Q Consensus       193 V----~~~Pt~~~~~~g~~v~~~~G~  214 (348)
                      +    .++||+++|++|+.+.+..|.
T Consensus        84 i~~~i~~~PT~v~~k~Gk~v~~~~G~  109 (122)
T TIGR01295        84 IPTSFMGTPTFVHITDGKQVSVRCGS  109 (122)
T ss_pred             CcccCCCCCEEEEEeCCeEEEEEeCC
Confidence            5    459999999999999988874

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>TIGR01068 thioredoxin thioredoxin

Probab=99.62  E-value=2.5e-15  Score=117.08  Aligned_cols=85  Identities=22%  Similarity=0.427  Sum_probs=75.5

Q ss_pred             CHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeec
Q 018973          126 SIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPHFSFYKS  204 (348)
Q Consensus       126 s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~  204 (348)
                      +.++|.+.+.+ .+++++|+||++||++|+.+.|.|+++++++++ +.|+.+|+++   ..+++++|+|..+||+++|++
T Consensus         2 ~~~~~~~~~~~-~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~---~~~~~~~~~v~~~P~~~~~~~   77 (101)
T TIGR01068         2 TDANFDETIAS-SDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDE---NPDIAAKYGIRSIPTLLLFKN   77 (101)
T ss_pred             CHHHHHHHHhh-cCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCC---CHHHHHHcCCCcCCEEEEEeC
Confidence            56788888874 467999999999999999999999999999875 9999999998   456999999999999999999


Q ss_pred             cccccccccC
Q 018973          205 MEKIHEEEGI  214 (348)
Q Consensus       205 g~~v~~~~G~  214 (348)
                      |+.+..+.|.
T Consensus        78 g~~~~~~~g~   87 (101)
T TIGR01068        78 GKEVDRSVGA   87 (101)
T ss_pred             CcEeeeecCC
Confidence            9888777664

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=99.62  E-value=2.7e-15  Score=117.86  Aligned_cols=87  Identities=22%  Similarity=0.266  Sum_probs=73.6

Q ss_pred             ceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC---cEEEEEeCCCchhHHHHHHHcCcCCCC
Q 018973          121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND---VEFILVMGDESEKTKELCEREKIKKVP  197 (348)
Q Consensus       121 v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~---v~f~~vd~d~~~~~~~l~~~~~V~~~P  197 (348)
                      |.++ +.++|++.+.+ .+++++|+||++||++|+.+.|.|+++++.+.+   +.|+++|+++.    +++..+++.++|
T Consensus         2 v~~l-~~~~f~~~i~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~----~~~~~~~~~~~P   75 (104)
T cd02995           2 VKVV-VGKNFDEVVLD-SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN----DVPSEFVVDGFP   75 (104)
T ss_pred             eEEE-chhhhHHHHhC-CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch----hhhhhccCCCCC
Confidence            4455 78899998875 358999999999999999999999999998765   89999999873    478899999999


Q ss_pred             eEEEeeccc--ccccccc
Q 018973          198 HFSFYKSME--KIHEEEG  213 (348)
Q Consensus       198 t~~~~~~g~--~v~~~~G  213 (348)
                      |+++|++|+  ...++.|
T Consensus        76 t~~~~~~~~~~~~~~~~g   93 (104)
T cd02995          76 TILFFPAGDKSNPIKYEG   93 (104)
T ss_pred             EEEEEcCCCcCCceEccC
Confidence            999999887  4444554

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=99.61  E-value=1.9e-15  Score=121.30  Aligned_cols=79  Identities=19%  Similarity=0.170  Sum_probs=67.1

Q ss_pred             HHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeecccccc
Q 018973          130 FDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIH  209 (348)
Q Consensus       130 f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~~v~  209 (348)
                      |.+.+.  .++.++|+|||+||++|+.+.|.+++++++++.+.|.++|.|+   .++++++|+|+.+||+++|++|+...
T Consensus        15 ~~~~l~--~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~---~~~l~~~~~v~~vPt~~i~~~g~~~~   89 (113)
T cd02975          15 FFKEMK--NPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDE---DKEKAEKYGVERVPTTIFLQDGGKDG   89 (113)
T ss_pred             HHHHhC--CCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCc---CHHHHHHcCCCcCCEEEEEeCCeecc
Confidence            444454  4777999999999999999999999999998779999999998   45699999999999999999876554


Q ss_pred             --cccc
Q 018973          210 --EEEG  213 (348)
Q Consensus       210 --~~~G  213 (348)
                        ++.|
T Consensus        90 ~~~~~G   95 (113)
T cd02975          90 GIRYYG   95 (113)
T ss_pred             eEEEEe
Confidence              3444

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=99.61  E-value=3.4e-15  Score=116.46  Aligned_cols=82  Identities=20%  Similarity=0.379  Sum_probs=72.4

Q ss_pred             HHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeeccccc
Q 018973          130 FDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKI  208 (348)
Q Consensus       130 f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~~v  208 (348)
                      ++..+.+ .+++|+|+||++||++|+.+.|.++++++++++ +.++++|+|+   ..+++++++|.++||+++|++|+.+
T Consensus         5 ~~~~~~~-~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~---~~~l~~~~~v~~vPt~~i~~~g~~v   80 (97)
T cd02949           5 LRKLYHE-SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDE---DQEIAEAAGIMGTPTVQFFKDKELV   80 (97)
T ss_pred             HHHHHHh-CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCC---CHHHHHHCCCeeccEEEEEECCeEE
Confidence            3444443 689999999999999999999999999999875 9999999998   4569999999999999999999999


Q ss_pred             cccccCC
Q 018973          209 HEEEGIG  215 (348)
Q Consensus       209 ~~~~G~~  215 (348)
                      .++.|..
T Consensus        81 ~~~~g~~   87 (97)
T cd02949          81 KEISGVK   87 (97)
T ss_pred             EEEeCCc
Confidence            9888854

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=99.60  E-value=4.4e-15  Score=116.10  Aligned_cols=84  Identities=24%  Similarity=0.321  Sum_probs=75.1

Q ss_pred             CHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC---cEEEEEeCCCchhHHHHHHHcCcCCCCeEEEe
Q 018973          126 SIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND---VEFILVMGDESEKTKELCEREKIKKVPHFSFY  202 (348)
Q Consensus       126 s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~---v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~  202 (348)
                      +.++|++.+.  ++++++|+||++||++|+.+.|.|+++++.+.+   +.|+.+|+++   ..+++++|+|+.+|++++|
T Consensus         2 ~~~~~~~~~~--~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~~i~~~P~~~~~   76 (102)
T TIGR01126         2 TASNFDDIVL--SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATA---EKDLASRFGVSGFPTIKFF   76 (102)
T ss_pred             chhhHHHHhc--cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccc---hHHHHHhCCCCcCCEEEEe
Confidence            5788999986  799999999999999999999999999998864   9999999998   5679999999999999999


Q ss_pred             eccccccccccC
Q 018973          203 KSMEKIHEEEGI  214 (348)
Q Consensus       203 ~~g~~v~~~~G~  214 (348)
                      ++|+.+.++.|.
T Consensus        77 ~~~~~~~~~~g~   88 (102)
T TIGR01126        77 PKGKKPVDYEGG   88 (102)
T ss_pred             cCCCcceeecCC
Confidence            988766667663

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=99.60  E-value=5.2e-15  Score=116.36  Aligned_cols=95  Identities=26%  Similarity=0.505  Sum_probs=81.4

Q ss_pred             ChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhC--CcEEEEEEECCC-chhHHHHHHhCCCCccceE
Q 018973          238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMA--GTVVFARMNGDE-NDSCMQFLRDMNVVEVPTF  314 (348)
Q Consensus       238 s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~--~~v~~~~vd~~~-~~~~~~l~~~~~V~~~PTl  314 (348)
                      +.+++++.+..   .+++++|+||++||++|+.+.|.+.++++.++  +++.++.+|+++ +++   ++++|+|.++||+
T Consensus         6 ~~~~~~~~~~~---~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~---~~~~~~i~~~P~~   79 (105)
T cd02998           6 TDSNFDKVVGD---DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKD---LAKKYGVSGFPTL   79 (105)
T ss_pred             chhcHHHHhcC---CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchh---hHHhCCCCCcCEE
Confidence            34677777654   36799999999999999999999999999986  469999999999 777   9999999999999


Q ss_pred             EEEeCC-eEEEEEeCC-ChHHHHHHH
Q 018973          315 LFIRDG-QIRGRYVGS-GKGELIGEI  338 (348)
Q Consensus       315 ~~~~~G-~~v~~~~G~-~~~~L~~~l  338 (348)
                      ++|++| +....+.|. +.++|.+||
T Consensus        80 ~~~~~~~~~~~~~~g~~~~~~l~~~i  105 (105)
T cd02998          80 KFFPKGSTEPVKYEGGRDLEDLVKFV  105 (105)
T ss_pred             EEEeCCCCCccccCCccCHHHHHhhC
Confidence            999866 666778888 888888764

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=99.60  E-value=5.4e-15  Score=116.11  Aligned_cols=94  Identities=27%  Similarity=0.466  Sum_probs=81.4

Q ss_pred             ChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC--cEEEEEEECCCchhHHHHHHhCCCCccceEE
Q 018973          238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG--TVVFARMNGDENDSCMQFLRDMNVVEVPTFL  315 (348)
Q Consensus       238 s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~  315 (348)
                      +.+++++.+.+.   +++++|+||++||++|+.+.|.+.++++.+++  ++.++++|+++++    ++..+++.++||++
T Consensus         6 ~~~~f~~~i~~~---~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~----~~~~~~~~~~Pt~~   78 (104)
T cd02995           6 VGKNFDEVVLDS---DKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAND----VPSEFVVDGFPTIL   78 (104)
T ss_pred             chhhhHHHHhCC---CCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchh----hhhhccCCCCCEEE
Confidence            456788887753   68999999999999999999999999999865  5999999999874    78889999999999


Q ss_pred             EEeCCe--EEEEEeCC-ChHHHHHHH
Q 018973          316 FIRDGQ--IRGRYVGS-GKGELIGEI  338 (348)
Q Consensus       316 ~~~~G~--~v~~~~G~-~~~~L~~~l  338 (348)
                      +|++|+  ...++.|. +.++|.+||
T Consensus        79 ~~~~~~~~~~~~~~g~~~~~~l~~fi  104 (104)
T cd02995          79 FFPAGDKSNPIKYEGDRTLEDLIKFI  104 (104)
T ss_pred             EEcCCCcCCceEccCCcCHHHHHhhC
Confidence            999887  56778898 888888775

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=99.59  E-value=2.8e-15  Score=118.48  Aligned_cols=80  Identities=14%  Similarity=0.179  Sum_probs=66.6

Q ss_pred             HHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC----CcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEe
Q 018973          127 IEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN----DVEFILVMGDESEKTKELCEREKIKKVPHFSFY  202 (348)
Q Consensus       127 ~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~----~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~  202 (348)
                      .++|++..   ++++++|+|||+||++|+.+.|.|+++++++.    ++.++.+|+++   ..+++++|+|+++||+++|
T Consensus         6 ~~~~~~~~---~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~---~~~~~~~~~I~~~Pt~~l~   79 (104)
T cd03000           6 DDSFKDVR---KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA---YSSIASEFGVRGYPTIKLL   79 (104)
T ss_pred             hhhhhhhc---cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECcc---CHhHHhhcCCccccEEEEE
Confidence            36677642   47899999999999999999999999999873    38899999998   4569999999999999999


Q ss_pred             ecccccccccc
Q 018973          203 KSMEKIHEEEG  213 (348)
Q Consensus       203 ~~g~~v~~~~G  213 (348)
                      ++|. ...+.|
T Consensus        80 ~~~~-~~~~~G   89 (104)
T cd03000          80 KGDL-AYNYRG   89 (104)
T ss_pred             cCCC-ceeecC
Confidence            7764 344555

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=99.58  E-value=6.8e-15  Score=115.67  Aligned_cols=88  Identities=24%  Similarity=0.310  Sum_probs=73.2

Q ss_pred             ceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC---CcEEEEEeCCC-chhHHHHHHHcCcCCC
Q 018973          121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN---DVEFILVMGDE-SEKTKELCEREKIKKV  196 (348)
Q Consensus       121 v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~---~v~f~~vd~d~-~~~~~~l~~~~~V~~~  196 (348)
                      +.++ +.++|++.+.+ .+++++|+||++||++|+.+.|.++++++++.   ++.|+.+|+++ .+   +++++|+|+++
T Consensus         2 ~~~l-~~~~~~~~~~~-~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~---~~~~~~~i~~~   76 (105)
T cd02998           2 VVEL-TDSNFDKVVGD-DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANK---DLAKKYGVSGF   76 (105)
T ss_pred             eEEc-chhcHHHHhcC-CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcch---hhHHhCCCCCc
Confidence            3455 67899887754 46799999999999999999999999999875   38999999888 54   49999999999


Q ss_pred             CeEEEeecc-cccccccc
Q 018973          197 PHFSFYKSM-EKIHEEEG  213 (348)
Q Consensus       197 Pt~~~~~~g-~~v~~~~G  213 (348)
                      ||+++|++| +....+.|
T Consensus        77 P~~~~~~~~~~~~~~~~g   94 (105)
T cd02998          77 PTLKFFPKGSTEPVKYEG   94 (105)
T ss_pred             CEEEEEeCCCCCccccCC
Confidence            999999877 44444555

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.58  E-value=1.2e-14  Score=112.65  Aligned_cols=94  Identities=23%  Similarity=0.472  Sum_probs=82.3

Q ss_pred             ChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHh--CCcEEEEEEECCCchhHHHHHHhCCCCccceEE
Q 018973          238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQM--AGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL  315 (348)
Q Consensus       238 s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~--~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~  315 (348)
                      +.+++.+.+.+    +++++|+||++||++|+.+.+.+.++++.+  .+.+.|+.+|++++..   ++++|+|.++||++
T Consensus         4 ~~~~~~~~i~~----~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~i~~~Pt~~   76 (101)
T cd02961           4 TDDNFDELVKD----SKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANND---LCSEYGVRGYPTIK   76 (101)
T ss_pred             cHHHHHHHHhC----CCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHH---HHHhCCCCCCCEEE
Confidence            44678888775    459999999999999999999999999999  5779999999998776   99999999999999


Q ss_pred             EEeCC-eEEEEEeCC-ChHHHHHHH
Q 018973          316 FIRDG-QIRGRYVGS-GKGELIGEI  338 (348)
Q Consensus       316 ~~~~G-~~v~~~~G~-~~~~L~~~l  338 (348)
                      +|++| +...++.|. +.+++.+++
T Consensus        77 ~~~~~~~~~~~~~g~~~~~~i~~~~  101 (101)
T cd02961          77 LFPNGSKEPVKYEGPRTLESLVEFI  101 (101)
T ss_pred             EEcCCCcccccCCCCcCHHHHHhhC
Confidence            99877 788888888 888887764

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=99.57  E-value=1.7e-14  Score=117.72  Aligned_cols=100  Identities=22%  Similarity=0.285  Sum_probs=80.2

Q ss_pred             hhHHHHhhhcccCC-cEEEEEEeCCCChhhhhhhhHHH---HHHHHhCCcEEEEEEECCCch----------hHHHHHHh
Q 018973          240 EDVEKLIDDHKVDQ-KLIVLDVGLKHCGPCVKVYPTVI---KLSRQMAGTVVFARMNGDEND----------SCMQFLRD  305 (348)
Q Consensus       240 ~~~~~~l~~~~~~~-k~vvV~F~a~wC~~C~~~~p~l~---~la~~~~~~v~~~~vd~~~~~----------~~~~l~~~  305 (348)
                      +++++..+    .+ ++++|+||++||++|+.+.+.+.   .+.+.+.+++.++.+|++...          ...+++++
T Consensus         4 ~~~~~a~~----~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~   79 (125)
T cd02951           4 EDLAEAAA----DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARK   79 (125)
T ss_pred             HHHHHHHH----cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHH
Confidence            34444444    46 99999999999999999998874   566666566889999998642          12359999


Q ss_pred             CCCCccceEEEEeC--CeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973          306 MNVVEVPTFLFIRD--GQIRGRYVGS-GKGELIGEILRYQG  343 (348)
Q Consensus       306 ~~V~~~PTl~~~~~--G~~v~~~~G~-~~~~L~~~l~~~~~  343 (348)
                      |+|.++||++++.+  |+++.++.|. +.+++.+.|+..++
T Consensus        80 ~~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~  120 (125)
T cd02951          80 YRVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQE  120 (125)
T ss_pred             cCCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHh
Confidence            99999999988864  6999999999 88999999988754

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.57  E-value=1.7e-14  Score=111.83  Aligned_cols=84  Identities=21%  Similarity=0.317  Sum_probs=74.2

Q ss_pred             CHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHc---CCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEe
Q 018973          126 SIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQC---NDVEFILVMGDESEKTKELCEREKIKKVPHFSFY  202 (348)
Q Consensus       126 s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~---~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~  202 (348)
                      +.++|.+.+.  ++++++|+||++||++|+.+.|.|+++++.+   .++.|+.+|+++   ..+++++|+|+.+||+++|
T Consensus         4 ~~~~~~~~i~--~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~i~~~Pt~~~~   78 (101)
T cd02961           4 TDDNFDELVK--DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA---NNDLCSEYGVRGYPTIKLF   78 (101)
T ss_pred             cHHHHHHHHh--CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc---hHHHHHhCCCCCCCEEEEE
Confidence            6789999998  4559999999999999999999999999988   349999999998   6679999999999999999


Q ss_pred             ecc-ccccccccC
Q 018973          203 KSM-EKIHEEEGI  214 (348)
Q Consensus       203 ~~g-~~v~~~~G~  214 (348)
                      ++| +...++.|.
T Consensus        79 ~~~~~~~~~~~g~   91 (101)
T cd02961          79 PNGSKEPVKYEGP   91 (101)
T ss_pred             cCCCcccccCCCC
Confidence            887 666666664

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=99.57  E-value=2.2e-14  Score=114.37  Aligned_cols=97  Identities=20%  Similarity=0.361  Sum_probs=78.8

Q ss_pred             ChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCc-hhHHHHHH-hCCCCccceE
Q 018973          238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDEN-DSCMQFLR-DMNVVEVPTF  314 (348)
Q Consensus       238 s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~-~~~~~l~~-~~~V~~~PTl  314 (348)
                      +.+++++++... ..+++++|.||++||++|+++.|.+.++++.+++ .+.++.||++.+ ..   +++ .|+|.++||+
T Consensus         7 ~~~~~~~~~~~~-~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~---~~~~~~~v~~~Pti   82 (109)
T cd02993           7 SRAEIEALAKGE-RRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQRE---FAKEELQLKSFPTI   82 (109)
T ss_pred             cHHHHHHHHhhh-hcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchh---hHHhhcCCCcCCEE
Confidence            456888777531 2478999999999999999999999999999976 499999999973 44   776 4999999999


Q ss_pred             EEEeCC-eEEEEEeCC--ChHHHHHHH
Q 018973          315 LFIRDG-QIRGRYVGS--GKGELIGEI  338 (348)
Q Consensus       315 ~~~~~G-~~v~~~~G~--~~~~L~~~l  338 (348)
                      ++|++| .....|.|.  +.+.|..||
T Consensus        83 ~~f~~~~~~~~~y~g~~~~~~~l~~f~  109 (109)
T cd02993          83 LFFPKNSRQPIKYPSEQRDVDSLLMFV  109 (109)
T ss_pred             EEEcCCCCCceeccCCCCCHHHHHhhC
Confidence            999765 566778883  888887764

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>PTZ00062 glutaredoxin; Provisional

Probab=99.57  E-value=2.4e-14  Score=125.93  Aligned_cols=94  Identities=19%  Similarity=0.205  Sum_probs=84.1

Q ss_pred             cCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEE
Q 018973          236 LHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL  315 (348)
Q Consensus       236 ~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~  315 (348)
                      ..+.+++.+.++.   +.+.++++||++||++|+.+.|.+.+++++++ .+.|++||.+           |+|.++|||+
T Consensus         3 ~~~~ee~~~~i~~---~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~-~~~F~~V~~d-----------~~V~~vPtfv   67 (204)
T PTZ00062          3 FIKKEEKDKLIES---NTGKLVLYVKSSKEPEYEQLMDVCNALVEDFP-SLEFYVVNLA-----------DANNEYGVFE   67 (204)
T ss_pred             CCCHHHHHHHHhc---CCCcEEEEEeCCCCcchHHHHHHHHHHHHHCC-CcEEEEEccc-----------cCcccceEEE
Confidence            4567888888864   24778999999999999999999999999995 5999999977           8999999999


Q ss_pred             EEeCCeEEEEEeCCChHHHHHHHHHHhCC
Q 018973          316 FIRDGQIRGRYVGSGKGELIGEILRYQGV  344 (348)
Q Consensus       316 ~~~~G~~v~~~~G~~~~~L~~~l~~~~~~  344 (348)
                      +|++|++++++.|.+..+|...+.++.+.
T Consensus        68 ~~~~g~~i~r~~G~~~~~~~~~~~~~~~~   96 (204)
T PTZ00062         68 FYQNSQLINSLEGCNTSTLVSFIRGWAQK   96 (204)
T ss_pred             EEECCEEEeeeeCCCHHHHHHHHHHHcCC
Confidence            99999999999999999999999988653

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=7e-15  Score=142.65  Aligned_cols=200  Identities=19%  Similarity=0.227  Sum_probs=141.3

Q ss_pred             ceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC---CcEEEEEeCCCchhHHHHHHHcCcCCCC
Q 018973          121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN---DVEFILVMGDESEKTKELCEREKIKKVP  197 (348)
Q Consensus       121 v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~---~v~f~~vd~d~~~~~~~l~~~~~V~~~P  197 (348)
                      +.+. +.++|+..+.+ .+..++|.||+|||++|+.+.|.+++++..+.   .+.+.++|++.   ...++.+++|+.+|
T Consensus       146 v~~l-~~~~~~~~~~~-~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~---~~~~~~~~~v~~~P  220 (383)
T KOG0191|consen  146 VFEL-TKDNFDETVKD-SDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATV---HKSLASRLEVRGYP  220 (383)
T ss_pred             eEEc-cccchhhhhhc-cCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccch---HHHHhhhhcccCCc
Confidence            5554 77888877664 57889999999999999999999999999874   38999999986   67799999999999


Q ss_pred             eEEEeecccc-cccccc-CCCCcccccccccCCC---ccceeecCChh----hH---HHHhhhcccCCcEEEEEEeCCCC
Q 018973          198 HFSFYKSMEK-IHEEEG-IGPDQLMGDVLYYGDS---HSAVVQLHSKE----DV---EKLIDDHKVDQKLIVLDVGLKHC  265 (348)
Q Consensus       198 t~~~~~~g~~-v~~~~G-~~~~~l~~~v~~~~~~---~~~v~~~~s~~----~~---~~~l~~~~~~~k~vvV~F~a~wC  265 (348)
                      |+++|++|.. ...+.| .+.+.+...+......   ...+.+..+.+    .+   +...... ......++.|+++||
T Consensus       221 t~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~  299 (383)
T KOG0191|consen  221 TLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERRNIPEPELKEIEDKDTFSPTFLDTAEFLDSL-EKKKNKFVKFYAPWC  299 (383)
T ss_pred             eEEEecCCCcccccccccccHHHHHHHHHhhcCCCCCCcccccccCccccccchhhhhhhhhhh-HHhhhhHhhhhcchh
Confidence            9999998888 444444 3333333222211110   11111111111    00   1111110 123567899999999


Q ss_pred             hhhhhhhhHHHHHHHH---hCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCC
Q 018973          266 GPCVKVYPTVIKLSRQ---MAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS  329 (348)
Q Consensus       266 ~~C~~~~p~l~~la~~---~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~  329 (348)
                      ..|....|.+...+..   ....+.+.++++.....   ++.+..++.+|++.++..|.......|.
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (383)
T KOG0191|consen  300 GHCGGFAPVYEDKAELGYPDLSKIKAAKLDCALLKS---LCQKAIVRGYPTIKLYNYGKNPSNIVGL  363 (383)
T ss_pred             hcccccchhHHHHHhccccccccceeeccccccccc---hhhHhhhhcCceeEeeccccccccccCc
Confidence            9999999999988887   33457888888877766   8899999999999999887655444444

>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=99.55  E-value=3.4e-14  Score=127.91  Aligned_cols=194  Identities=19%  Similarity=0.210  Sum_probs=132.1

Q ss_pred             CHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHH----cCC--cEEEEEeCCCchhHHHHHHHcCcCCCCeE
Q 018973          126 SIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQ----CND--VEFILVMGDESEKTKELCEREKIKKVPHF  199 (348)
Q Consensus       126 s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~----~~~--v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~  199 (348)
                      +.++++..+.  .+.+|+|.|||+||+-.+.+.|.+++.+++    +++  +.+.+||||.   ..+++.+|.|..+||+
T Consensus         2 t~~N~~~il~--s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~---e~~ia~ky~I~KyPTl   76 (375)
T KOG0912|consen    2 TSENIDSILD--SNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDK---EDDIADKYHINKYPTL   76 (375)
T ss_pred             ccccHHHhhc--cceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccch---hhHHhhhhccccCcee
Confidence            4567788887  589999999999999999999999998875    554  9999999999   5669999999999999


Q ss_pred             EEeecccccc-ccccC-CCCcccccccccCCCccceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHH
Q 018973          200 SFYKSMEKIH-EEEGI-GPDQLMGDVLYYGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIK  277 (348)
Q Consensus       200 ~~~~~g~~v~-~~~G~-~~~~l~~~v~~~~~~~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~  277 (348)
                      .+|+||.... ++.|. ..+.|.+.+.+..  ..++.+..+.++++.....   +++.++.+|-....+.-.    .+.+
T Consensus        77 KvfrnG~~~~rEYRg~RsVeaL~efi~kq~--s~~i~Ef~sl~~l~n~~~p---~K~~vIgyF~~kdspey~----~~~k  147 (375)
T KOG0912|consen   77 KVFRNGEMMKREYRGQRSVEALIEFIEKQL--SDPINEFESLDQLQNLDIP---SKRTVIGYFPSKDSPEYD----NLRK  147 (375)
T ss_pred             eeeeccchhhhhhccchhHHHHHHHHHHHh--ccHHHHHHhHHHHHhhhcc---ccceEEEEeccCCCchHH----HHHH
Confidence            9999999887 67773 3455554443322  2335566666777766553   367777777756555433    3566


Q ss_pred             HHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEE--EEEeCC--ChHHHHHHHHHH
Q 018973          278 LSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIR--GRYVGS--GKGELIGEILRY  341 (348)
Q Consensus       278 la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v--~~~~G~--~~~~L~~~l~~~  341 (348)
                      ++.-+.++..|..--.|.       .....-.+.+ +++|+.+...  ..+.|.  +.+++..||++.
T Consensus       148 va~~lr~dc~f~V~~gD~-------~~~~~~~~~~-~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dK  207 (375)
T KOG0912|consen  148 VASLLRDDCVFLVGFGDL-------LKPHEPPGKN-ILVFDPDHSEPNHEFLGSMTNFDELKQWIQDK  207 (375)
T ss_pred             HHHHHhhccEEEeecccc-------ccCCCCCCCc-eEEeCCCcCCcCcccccccccHHHHHHHHHhc
Confidence            666666554443221121       1111112233 3444333222  258888  899999999875

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=99.55  E-value=5.5e-14  Score=123.05  Aligned_cols=102  Identities=17%  Similarity=0.305  Sum_probs=81.6

Q ss_pred             ccceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCC
Q 018973          230 HSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVV  309 (348)
Q Consensus       230 ~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~  309 (348)
                      ++.+..+ +.++|...+... ..+.+|||+||++||++|+.+.|.|.+++.+|+ .++|++||+++      ...+|++.
T Consensus        81 ~G~v~ei-s~~~f~~eV~~a-s~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-~vkFvkI~ad~------~~~~~~i~  151 (192)
T cd02988          81 FGEVYEI-SKPDYVREVTEA-SKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP-DTKFVKIISTQ------CIPNYPDK  151 (192)
T ss_pred             CCeEEEe-CHHHHHHHHHhc-CCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC-CCEEEEEEhHH------hHhhCCCC
Confidence            4456666 456666655542 124699999999999999999999999999996 59999999975      35799999


Q ss_pred             ccceEEEEeCCeEEEEEeCC--------ChHHHHHHHHH
Q 018973          310 EVPTFLFIRDGQIRGRYVGS--------GKGELIGEILR  340 (348)
Q Consensus       310 ~~PTl~~~~~G~~v~~~~G~--------~~~~L~~~l~~  340 (348)
                      ++||+++|++|+.+.++.|.        +.++|..+|.+
T Consensus       152 ~lPTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~  190 (192)
T cd02988         152 NLPTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ  190 (192)
T ss_pred             CCCEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence            99999999999999999874        45566666543

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=99.55  E-value=6.9e-14  Score=106.29  Aligned_cols=90  Identities=33%  Similarity=0.592  Sum_probs=79.6

Q ss_pred             hHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCC
Q 018973          241 DVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDG  320 (348)
Q Consensus       241 ~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G  320 (348)
                      ++++.+..    +++++|+||++||++|+.+.+.+.++++. .+++.|+.+|+++...   ++++|++.++||++++++|
T Consensus         2 ~~~~~~~~----~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~---~~~~~~v~~~P~~~~~~~g   73 (93)
T cd02947           2 EFEELIKS----AKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENPE---LAEEYGVRSIPTFLFFKNG   73 (93)
T ss_pred             chHHHHhc----CCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCChh---HHHhcCcccccEEEEEECC
Confidence            45556653    48899999999999999999999999988 4569999999998776   9999999999999999999


Q ss_pred             eEEEEEeCC-ChHHHHHHH
Q 018973          321 QIRGRYVGS-GKGELIGEI  338 (348)
Q Consensus       321 ~~v~~~~G~-~~~~L~~~l  338 (348)
                      +.+..+.|. +.++|.++|
T Consensus        74 ~~~~~~~g~~~~~~l~~~i   92 (93)
T cd02947          74 KEVDRVVGADPKEELEEFL   92 (93)
T ss_pred             EEEEEEecCCCHHHHHHHh
Confidence            999999998 778888776

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=99.54  E-value=4.7e-14  Score=113.57  Aligned_cols=101  Identities=21%  Similarity=0.176  Sum_probs=78.6

Q ss_pred             ecCChhhHHHHhhhcccCCcEEEEEEeC-------CCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch----hHHHHH
Q 018973          235 QLHSKEDVEKLIDDHKVDQKLIVLDVGL-------KHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND----SCMQFL  303 (348)
Q Consensus       235 ~~~s~~~~~~~l~~~~~~~k~vvV~F~a-------~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~----~~~~l~  303 (348)
                      .+.+.++|.+.+...  .+++++|+|||       +||++|+.+.|.+++++.++++++.|++||+++.+    ...+++
T Consensus         5 ~~~~~~~f~~~i~~~--~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~   82 (119)
T cd02952           5 AVRGYEEFLKLLKSH--EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFR   82 (119)
T ss_pred             cccCHHHHHHHHHhc--CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhH
Confidence            355778888888864  57899999999       99999999999999999999867999999998742    112399


Q ss_pred             HhCCCC-ccceEEEEeCCeEEEEEeCCChHHHHHH
Q 018973          304 RDMNVV-EVPTFLFIRDGQIRGRYVGSGKGELIGE  337 (348)
Q Consensus       304 ~~~~V~-~~PTl~~~~~G~~v~~~~G~~~~~L~~~  337 (348)
                      ++++|. ++||+++|++|+.+....-.+.+.+..+
T Consensus        83 ~~~~I~~~iPT~~~~~~~~~l~~~~c~~~~~~~~~  117 (119)
T cd02952          83 TDPKLTTGVPTLLRWKTPQRLVEDECLQADLVEMF  117 (119)
T ss_pred             hccCcccCCCEEEEEcCCceecchhhcCHHHHHHh
Confidence            999998 9999999988754432222255555444

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=99.53  E-value=3.9e-14  Score=138.48  Aligned_cols=87  Identities=13%  Similarity=0.152  Sum_probs=73.5

Q ss_pred             CCCceEecCHHHHHHHHH-hcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCCCchhHHHHHHHcCcC
Q 018973          118 DERVKKVHSIEEFDEALR-LAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGDESEKTKELCEREKIK  194 (348)
Q Consensus       118 ~~~v~~v~s~~~f~~~l~-~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d~~~~~~~l~~~~~V~  194 (348)
                      ...|+++ |.++|+++++ ...+++|||+|||+||++|+.+.|.|+++++++.+  +.|++||+|..+. ...+++|+|+
T Consensus       350 ~~~Vv~L-~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~-~~~~~~~~I~  427 (463)
T TIGR00424       350 SNNVVSL-SRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQK-EFAKQELQLG  427 (463)
T ss_pred             CCCeEEC-CHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCcc-HHHHHHcCCC
Confidence            3456665 8889999986 55799999999999999999999999999999864  8999999997431 2234789999


Q ss_pred             CCCeEEEeeccc
Q 018973          195 KVPHFSFYKSME  206 (348)
Q Consensus       195 ~~Pt~~~~~~g~  206 (348)
                      ++||+++|++|.
T Consensus       428 ~~PTii~Fk~g~  439 (463)
T TIGR00424       428 SFPTILFFPKHS  439 (463)
T ss_pred             ccceEEEEECCC
Confidence            999999999885

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=99.52  E-value=3.5e-14  Score=107.92  Aligned_cols=83  Identities=31%  Similarity=0.506  Sum_probs=73.9

Q ss_pred             HHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeecccc
Q 018973          128 EEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEK  207 (348)
Q Consensus       128 ~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~~  207 (348)
                      ++|++.+.  .+++++|.||++||++|+.+.+.+++++++++++.|+.+|+++   ..+++++|++.++||+++|++|+.
T Consensus         1 ~~~~~~~~--~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~~v~~~P~~~~~~~g~~   75 (93)
T cd02947           1 EEFEELIK--SAKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDE---NPELAEEYGVRSIPTFLFFKNGKE   75 (93)
T ss_pred             CchHHHHh--cCCcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCC---ChhHHHhcCcccccEEEEEECCEE
Confidence            35777777  4599999999999999999999999999997789999999998   556999999999999999999998


Q ss_pred             ccccccCC
Q 018973          208 IHEEEGIG  215 (348)
Q Consensus       208 v~~~~G~~  215 (348)
                      +..+.|..
T Consensus        76 ~~~~~g~~   83 (93)
T cd02947          76 VDRVVGAD   83 (93)
T ss_pred             EEEEecCC
Confidence            88887754

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=99.52  E-value=5.1e-14  Score=112.52  Aligned_cols=84  Identities=15%  Similarity=0.125  Sum_probs=68.4

Q ss_pred             cCHHHHHHHHHhcCCCEEEEEEeC--CCCH---HHHhhhhHHHHHHHHcCCcEEEEEeCCCch--hHHHHHHHcCcC--C
Q 018973          125 HSIEEFDEALRLAKNKLVVVEFAA--SRSL---DSSKIYPFMVDLSRQCNDVEFILVMGDESE--KTKELCEREKIK--K  195 (348)
Q Consensus       125 ~s~~~f~~~l~~~~~k~vvV~F~a--~wC~---~C~~~~p~l~~la~~~~~v~f~~vd~d~~~--~~~~l~~~~~V~--~  195 (348)
                      .+.++|++.+.  +++.|+|.|||  |||+   +|+.++|.+.+.+.+   +.+++||+++.+  +..+||++|+|+  +
T Consensus         6 L~~~nF~~~v~--~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~---v~lakVd~~d~~~~~~~~L~~~y~I~~~g   80 (116)
T cd03007           6 LDTVTFYKVIP--KFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDD---LLVAEVGIKDYGEKLNMELGERYKLDKES   80 (116)
T ss_pred             CChhhHHHHHh--cCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCc---eEEEEEecccccchhhHHHHHHhCCCcCC
Confidence            38999999998  78999999999  9999   888888777765543   899999996422  157899999999  9


Q ss_pred             CCeEEEeeccc--ccccccc
Q 018973          196 VPHFSFYKSME--KIHEEEG  213 (348)
Q Consensus       196 ~Pt~~~~~~g~--~v~~~~G  213 (348)
                      +||+++|++|+  ....+.|
T Consensus        81 yPTl~lF~~g~~~~~~~Y~G  100 (116)
T cd03007          81 YPVIYLFHGGDFENPVPYSG  100 (116)
T ss_pred             CCEEEEEeCCCcCCCccCCC
Confidence            99999999985  3344555

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=99.51  E-value=6.2e-14  Score=114.45  Aligned_cols=87  Identities=16%  Similarity=0.203  Sum_probs=70.1

Q ss_pred             HHHHHHHHHhcCC-CEEEEEEeCCCCHHHHhhhhHHH---HHHHHcC-CcEEEEEeCCCch----------hHHHHHHHc
Q 018973          127 IEEFDEALRLAKN-KLVVVEFAASRSLDSSKIYPFMV---DLSRQCN-DVEFILVMGDESE----------KTKELCERE  191 (348)
Q Consensus       127 ~~~f~~~l~~~~~-k~vvV~F~a~wC~~C~~~~p~l~---~la~~~~-~v~f~~vd~d~~~----------~~~~l~~~~  191 (348)
                      .++++++++  .+ ++|+|+|||+||++|+.+.|.+.   ++.+.+. ++.++.||+++..          ...+++.+|
T Consensus         3 ~~~~~~a~~--~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~   80 (125)
T cd02951           3 YEDLAEAAA--DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKY   80 (125)
T ss_pred             HHHHHHHHH--cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHc
Confidence            467777776  57 99999999999999999999884   5555554 4889999988631          136799999


Q ss_pred             CcCCCCeEEEeec--cccccccccCC
Q 018973          192 KIKKVPHFSFYKS--MEKIHEEEGIG  215 (348)
Q Consensus       192 ~V~~~Pt~~~~~~--g~~v~~~~G~~  215 (348)
                      +|+++||++|+.+  |+.+.++.|..
T Consensus        81 ~v~~~Pt~~~~~~~gg~~~~~~~G~~  106 (125)
T cd02951          81 RVRFTPTVIFLDPEGGKEIARLPGYL  106 (125)
T ss_pred             CCccccEEEEEcCCCCceeEEecCCC
Confidence            9999999999975  58888888853

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>PLN02309 5'-adenylylsulfate reductase

Probab=99.50  E-value=1e-13  Score=135.47  Aligned_cols=87  Identities=13%  Similarity=0.166  Sum_probs=74.2

Q ss_pred             CCCCceEecCHHHHHHHHH-hcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCC-CchhHHHHHH-Hc
Q 018973          117 RDERVKKVHSIEEFDEALR-LAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGD-ESEKTKELCE-RE  191 (348)
Q Consensus       117 ~~~~v~~v~s~~~f~~~l~-~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d-~~~~~~~l~~-~~  191 (348)
                      ..+.|+++ +.++|++++. ...+++|||+|||+||++|+.+.|.|+++++++.+  +.|++||+| +   ..++++ +|
T Consensus       343 ~~~~Vv~L-t~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~---~~~la~~~~  418 (457)
T PLN02309        343 NSQNVVAL-SRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGD---QKEFAKQEL  418 (457)
T ss_pred             CCCCcEEC-CHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCc---chHHHHhhC
Confidence            33466666 8899999875 34689999999999999999999999999999854  999999999 5   456886 69


Q ss_pred             CcCCCCeEEEeecccc
Q 018973          192 KIKKVPHFSFYKSMEK  207 (348)
Q Consensus       192 ~V~~~Pt~~~~~~g~~  207 (348)
                      +|+++|||++|++|..
T Consensus       419 ~I~~~PTil~f~~g~~  434 (457)
T PLN02309        419 QLGSFPTILLFPKNSS  434 (457)
T ss_pred             CCceeeEEEEEeCCCC
Confidence            9999999999998753

>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.48  E-value=1.7e-13  Score=119.12  Aligned_cols=189  Identities=20%  Similarity=0.316  Sum_probs=135.9

Q ss_pred             CceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeE
Q 018973          120 RVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHF  199 (348)
Q Consensus       120 ~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~  199 (348)
                      +|+.+...++|  ...  +++..++.|||+||.+|+++...++.+++..+++.|++++.++   ..+++..+.|..+|++
T Consensus         2 ~v~~i~~~~~f--~~~--~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~---~~eis~~~~v~~vp~~   74 (227)
T KOG0911|consen    2 TVQFIVFQEQF--LDQ--KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEE---FPEISNLIAVEAVPYF   74 (227)
T ss_pred             CceeehhHHHH--HHh--ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhh---hhHHHHHHHHhcCcee
Confidence            57788888899  433  7999999999999999999999999999999889999999999   6679999999999999


Q ss_pred             EEeeccccccccccCCCCcccccccccCCCc---------cceeecC--ChhhHHHHhhhcccCCcEEEEEE-eC---CC
Q 018973          200 SFYKSMEKIHEEEGIGPDQLMGDVLYYGDSH---------SAVVQLH--SKEDVEKLIDDHKVDQKLIVLDV-GL---KH  264 (348)
Q Consensus       200 ~~~~~g~~v~~~~G~~~~~l~~~v~~~~~~~---------~~v~~~~--s~~~~~~~l~~~~~~~k~vvV~F-~a---~w  264 (348)
                      +++..|+.+.+..|.++..+...+..+....         ..+.+..  ....++..+...- +.++++++. +.   |-
T Consensus        75 ~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~lv-~a~~v~lFmKG~p~~P~  153 (227)
T KOG0911|consen   75 VFFFLGEKVDRLSGADPPFLVSKVEKLAESGSASLGMGLSTTIRETQTTNETDLDNRLEKLV-KAKPVMLFMKGTPEEPK  153 (227)
T ss_pred             eeeecchhhhhhhccCcHHHHHHHHHhhhhcccccCCCCCcchhcccccchhhHHHHHHHhc-ccCeEEEEecCCCCccc
Confidence            9999999999999988766554433321111         1111110  0011333333321 234444433 33   56


Q ss_pred             ChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceE-EEEeCCeEEE
Q 018973          265 CGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTF-LFIRDGQIRG  324 (348)
Q Consensus       265 C~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl-~~~~~G~~v~  324 (348)
                      |+..+++...|.    .+  ++.|...|+-.++++++..+.|  ..+||| .+|-+|+.++
T Consensus       154 CGFS~~~v~iL~----~~--nV~~~~fdIL~DeelRqglK~f--SdWPTfPQlyI~GEFiG  206 (227)
T KOG0911|consen  154 CGFSRQLVGILQ----SH--NVNYTIFDVLTDEELRQGLKEF--SDWPTFPQLYVKGEFIG  206 (227)
T ss_pred             ccccHHHHHHHH----Hc--CCCeeEEeccCCHHHHHHhhhh--cCCCCccceeECCEecc
Confidence            666666544443    33  3678999999888877777776  789998 8888998764

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=99.47  E-value=9.4e-14  Score=112.14  Aligned_cols=83  Identities=13%  Similarity=0.171  Sum_probs=63.7

Q ss_pred             HHHHHHHhc--CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC-CcEEEEEeCCCchhHHHHHHHcCcCC--CCeEEEee
Q 018973          129 EFDEALRLA--KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN-DVEFILVMGDESEKTKELCEREKIKK--VPHFSFYK  203 (348)
Q Consensus       129 ~f~~~l~~~--~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~-~v~f~~vd~d~~~~~~~l~~~~~V~~--~Pt~~~~~  203 (348)
                      ++++.++.+  ++++|+|+|||+||++|+.+.|.+.+....+. +..|+.||+|..++  .+.++|++.+  +||++|+.
T Consensus         7 ~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~--~~~~~~~~~g~~vPt~~f~~   84 (117)
T cd02959           7 TLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEE--PKDEEFSPDGGYIPRILFLD   84 (117)
T ss_pred             eHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCC--chhhhcccCCCccceEEEEC
Confidence            355555433  48999999999999999999999999876543 35677777776432  3456899986  99999995


Q ss_pred             -cccccccccc
Q 018973          204 -SMEKIHEEEG  213 (348)
Q Consensus       204 -~g~~v~~~~G  213 (348)
                       +|+.+.++.+
T Consensus        85 ~~Gk~~~~~~~   95 (117)
T cd02959          85 PSGDVHPEIIN   95 (117)
T ss_pred             CCCCCchhhcc
Confidence             8999886555

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=99.47  E-value=5.3e-13  Score=100.31  Aligned_cols=79  Identities=20%  Similarity=0.359  Sum_probs=70.3

Q ss_pred             EEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCC-ChHHH
Q 018973          256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS-GKGEL  334 (348)
Q Consensus       256 vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~-~~~~L  334 (348)
                      .+..||++||++|+.+.+.+++++++++..+.++.||.+++++   ++++|++.++||+++  +|+.  ++.|. +.++|
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~---~~~~~~v~~vPt~~~--~g~~--~~~G~~~~~~l   74 (82)
T TIGR00411         2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQ---KAMEYGIMAVPAIVI--NGDV--EFIGAPTKEEL   74 (82)
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHH---HHHHcCCccCCEEEE--CCEE--EEecCCCHHHH
Confidence            4678999999999999999999999987779999999998887   899999999999986  7763  77898 89999


Q ss_pred             HHHHHHH
Q 018973          335 IGEILRY  341 (348)
Q Consensus       335 ~~~l~~~  341 (348)
                      .++|++.
T Consensus        75 ~~~l~~~   81 (82)
T TIGR00411        75 VEAIKKR   81 (82)
T ss_pred             HHHHHhh
Confidence            9998865

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=99.47  E-value=1.6e-13  Score=110.28  Aligned_cols=87  Identities=18%  Similarity=0.289  Sum_probs=70.6

Q ss_pred             ChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhC---CcEEEEEEECCCchhHHHHHHhCCCCccceE
Q 018973          238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMA---GTVVFARMNGDENDSCMQFLRDMNVVEVPTF  314 (348)
Q Consensus       238 s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~---~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl  314 (348)
                      +.++|++.+.+.   +++++|+||++||++|+.+.|.|.++++.++   +.+.|+.+|++... ..+++++|+|+++||+
T Consensus         7 ~~~~f~~~i~~~---~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~-~~~~~~~~~i~~~Pt~   82 (114)
T cd02992           7 DAASFNSALLGS---PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE-NVALCRDFGVTGYPTL   82 (114)
T ss_pred             CHHhHHHHHhcC---CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh-hHHHHHhCCCCCCCEE
Confidence            567888888764   5899999999999999999999999999874   34899999976422 1239999999999999


Q ss_pred             EEEeCCeEEEEEeCC
Q 018973          315 LFIRDGQIRGRYVGS  329 (348)
Q Consensus       315 ~~~~~G~~v~~~~G~  329 (348)
                      ++|++|. .....|.
T Consensus        83 ~lf~~~~-~~~~~~~   96 (114)
T cd02992          83 RYFPPFS-KEATDGL   96 (114)
T ss_pred             EEECCCC-ccCCCCC
Confidence            9999887 3333444

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=99.46  E-value=1.9e-13  Score=133.10  Aligned_cols=107  Identities=19%  Similarity=0.398  Sum_probs=94.1

Q ss_pred             ceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC---cEEEEEEECCCchhHHHHHHhCCC
Q 018973          232 AVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG---TVVFARMNGDENDSCMQFLRDMNV  308 (348)
Q Consensus       232 ~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~---~v~~~~vd~~~~~~~~~l~~~~~V  308 (348)
                      .+..+ +.++|+..+..    +..++|.||||||++|+++.|.+.+.+..+.+   .+..++||++++.+   +|.+|+|
T Consensus        26 ~Vl~L-t~dnf~~~i~~----~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~---~~~~y~v   97 (493)
T KOG0190|consen   26 DVLVL-TKDNFKETING----HEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESD---LASKYEV   97 (493)
T ss_pred             ceEEE-ecccHHHHhcc----CceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhh---hHhhhcC
Confidence            34444 56889999985    58899999999999999999999999999864   58999999999876   9999999


Q ss_pred             CccceEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhCCCC
Q 018973          309 VEVPTFLFIRDGQIRGRYVGS-GKGELIGEILRYQGVRV  346 (348)
Q Consensus       309 ~~~PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~~~~  346 (348)
                      +++||+.+|++|+....|.|. +.+.+..||.+..|...
T Consensus        98 ~gyPTlkiFrnG~~~~~Y~G~r~adgIv~wl~kq~gPa~  136 (493)
T KOG0190|consen   98 RGYPTLKIFRNGRSAQDYNGPREADGIVKWLKKQSGPAS  136 (493)
T ss_pred             CCCCeEEEEecCCcceeccCcccHHHHHHHHHhccCCCc
Confidence            999999999999987788888 99999999999887643

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.45  E-value=3.4e-13  Score=105.91  Aligned_cols=86  Identities=12%  Similarity=0.137  Sum_probs=78.3

Q ss_pred             CcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCC--ccceEEEEeC--CeEEEEEeC
Q 018973          253 QKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVV--EVPTFLFIRD--GQIRGRYVG  328 (348)
Q Consensus       253 ~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~--~~PTl~~~~~--G~~v~~~~G  328 (348)
                      ++++++.|+++||++|+.+.+.++++++++++++.|+.+|++++++   +++.|++.  ++|+++++++  |+......|
T Consensus        12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~---~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~   88 (103)
T cd02982          12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGR---HLEYFGLKEEDLPVIAIINLSDGKKYLMPEE   88 (103)
T ss_pred             CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHH---HHHHcCCChhhCCEEEEEecccccccCCCcc
Confidence            5899999999999999999999999999999889999999999887   99999999  9999999988  766665566


Q ss_pred             C-ChHHHHHHHHHH
Q 018973          329 S-GKGELIGEILRY  341 (348)
Q Consensus       329 ~-~~~~L~~~l~~~  341 (348)
                      . +.++|.++++++
T Consensus        89 ~~~~~~l~~fi~~~  102 (103)
T cd02982          89 ELTAESLEEFVEDF  102 (103)
T ss_pred             ccCHHHHHHHHHhh
Confidence            6 899999999875

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=99.45  E-value=7e-13  Score=131.26  Aligned_cols=101  Identities=17%  Similarity=0.417  Sum_probs=89.6

Q ss_pred             ChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC---cEEEEEEECCCchhHHHHHHhCCCCccceE
Q 018973          238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG---TVVFARMNGDENDSCMQFLRDMNVVEVPTF  314 (348)
Q Consensus       238 s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~---~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl  314 (348)
                      +.+++++.+.+    +++++|.||++||++|+.+.|.+.++++.+.+   ++.|+.||++++.+   ++++|+|.++||+
T Consensus         7 ~~~~~~~~i~~----~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~---l~~~~~i~~~Pt~   79 (462)
T TIGR01130         7 TKDNFDDFIKS----HEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKD---LAQKYGVSGYPTL   79 (462)
T ss_pred             CHHHHHHHHhc----CCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHH---HHHhCCCccccEE
Confidence            56788888864    67899999999999999999999999888743   49999999999887   9999999999999


Q ss_pred             EEEeCCeE-EEEEeCC-ChHHHHHHHHHHhCCC
Q 018973          315 LFIRDGQI-RGRYVGS-GKGELIGEILRYQGVR  345 (348)
Q Consensus       315 ~~~~~G~~-v~~~~G~-~~~~L~~~l~~~~~~~  345 (348)
                      ++|++|+. +.++.|. +.+.|.+++.+.++..
T Consensus        80 ~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~  112 (462)
T TIGR01130        80 KIFRNGEDSVSDYNGPRDADGIVKYMKKQSGPA  112 (462)
T ss_pred             EEEeCCccceeEecCCCCHHHHHHHHHHhcCCC
Confidence            99999988 7888998 9999999999987644

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>PTZ00102 disulphide isomerase; Provisional

Probab=99.44  E-value=7.9e-13  Score=131.80  Aligned_cols=105  Identities=21%  Similarity=0.442  Sum_probs=90.9

Q ss_pred             eeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhC---CcEEEEEEECCCchhHHHHHHhCCCC
Q 018973          233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMA---GTVVFARMNGDENDSCMQFLRDMNVV  309 (348)
Q Consensus       233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~---~~v~~~~vd~~~~~~~~~l~~~~~V~  309 (348)
                      +..+ +.+++++.+.+    ++.++|+||++||++|+++.|.+.++++.+.   .++.|+.+|++++.+   ++++|+|.
T Consensus        34 v~~l-~~~~f~~~i~~----~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~---l~~~~~i~  105 (477)
T PTZ00102         34 VTVL-TDSTFDKFITE----NEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEME---LAQEFGVR  105 (477)
T ss_pred             cEEc-chhhHHHHHhc----CCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHH---HHHhcCCC
Confidence            3444 55788888764    5789999999999999999999999987763   359999999999887   99999999


Q ss_pred             ccceEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhCCCC
Q 018973          310 EVPTFLFIRDGQIRGRYVGS-GKGELIGEILRYQGVRV  346 (348)
Q Consensus       310 ~~PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~~~~  346 (348)
                      ++||+++|++|+.+ ++.|. +.+.|.+++.++.+..+
T Consensus       106 ~~Pt~~~~~~g~~~-~y~g~~~~~~l~~~l~~~~~~~~  142 (477)
T PTZ00102        106 GYPTIKFFNKGNPV-NYSGGRTADGIVSWIKKLTGPAV  142 (477)
T ss_pred             cccEEEEEECCceE-EecCCCCHHHHHHHHHHhhCCCc
Confidence            99999999999877 88898 99999999999987644

>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.44  E-value=3.9e-13  Score=130.62  Aligned_cols=212  Identities=14%  Similarity=0.241  Sum_probs=131.0

Q ss_pred             CCCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC---C-cEEEEEeCCCchhHHHHHHHcC
Q 018973          117 RDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN---D-VEFILVMGDESEKTKELCEREK  192 (348)
Q Consensus       117 ~~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~---~-v~f~~vd~d~~~~~~~l~~~~~  192 (348)
                      .++.+.++ +.+.|...+... .+..+|+||++|||+|++++|.++++++...   . +.+..|||-+.. +..+|++|+
T Consensus        37 ~~D~ii~L-d~~tf~~~v~~~-~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~-N~~lCRef~  113 (606)
T KOG1731|consen   37 PDDPIIEL-DVDTFNAAVFGS-RKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEE-NVKLCREFS  113 (606)
T ss_pred             CCCCeEEe-ehhhhHHHhccc-chhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchh-hhhhHhhcC
Confidence            33677777 899999998753 4689999999999999999999999999754   3 789999987644 678999999


Q ss_pred             cCCCCeEEEeeccccc----cccccCC-CCccccccc----------ccC--CCccceeecCChhhHHHHhhhcccCCcE
Q 018973          193 IKKVPHFSFYKSMEKI----HEEEGIG-PDQLMGDVL----------YYG--DSHSAVVQLHSKEDVEKLIDDHKVDQKL  255 (348)
Q Consensus       193 V~~~Pt~~~~~~g~~v----~~~~G~~-~~~l~~~v~----------~~~--~~~~~v~~~~s~~~~~~~l~~~~~~~k~  255 (348)
                      |+.+||+.+|..+-.-    ..+.|.. +.++.+...          .++  .+..++.+..+.+++.+.+..   ....
T Consensus       114 V~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~~~~~~~WP~f~pl~~~~~~~~l~~~~~~---~~~y  190 (606)
T KOG1731|consen  114 VSGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEEDAQNRYPSWPNFDPLKDTTTLEELDEGIST---TANY  190 (606)
T ss_pred             CCCCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcchHHHHhccccc---ccce
Confidence            9999999999643211    1122211 112111111          111  011123333333333333332   2334


Q ss_pred             EEEEEe-CCCChhhhhhhhHHHHHHHHhC-CcEEEE-EEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCC-Ch
Q 018973          256 IVLDVG-LKHCGPCVKVYPTVIKLSRQMA-GTVVFA-RMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS-GK  331 (348)
Q Consensus       256 vvV~F~-a~wC~~C~~~~p~l~~la~~~~-~~v~~~-~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~-~~  331 (348)
                      +.+.|- .+.-       --+..+...++ +.+.+. ..|....+    +.+ +++...|+.+++++|+........ +.
T Consensus       191 vAiv~e~~~s~-------lg~~~~l~~l~~~~v~vr~~~d~q~~~----~~~-l~~~~~~~~llfrnG~~q~l~~~~~s~  258 (606)
T KOG1731|consen  191 VAIVFETEPSD-------LGWANLLNDLPSKQVGVRARLDTQNFP----LFG-LKPDNFPLALLFRNGEQQPLWPSSSSR  258 (606)
T ss_pred             eEEEEecCCcc-------cHHHHHHhhccCCCcceEEEecchhcc----ccc-cCCCCchhhhhhcCCcccccccccccH
Confidence            444442 2211       11344444442 123333 33444444    455 899999999999999876554444 67


Q ss_pred             HHHHHHHHHHhCCCC
Q 018973          332 GELIGEILRYQGVRV  346 (348)
Q Consensus       332 ~~L~~~l~~~~~~~~  346 (348)
                      +...+.|.+++|.+.
T Consensus       259 ~~y~~~I~~~lg~~~  273 (606)
T KOG1731|consen  259 SAYVKKIDDLLGDKN  273 (606)
T ss_pred             HHHHHHHHHHhcCcc
Confidence            788888888887653

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=99.43  E-value=9.7e-13  Score=128.72  Aligned_cols=105  Identities=20%  Similarity=0.358  Sum_probs=83.4

Q ss_pred             eeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCc-EEEEEEECCCchhHHHHH-HhCCCCc
Q 018973          233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGT-VVFARMNGDENDSCMQFL-RDMNVVE  310 (348)
Q Consensus       233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~~~~~~~~~l~-~~~~V~~  310 (348)
                      +..+ +.++|++.++. ...+++++|+||++||++|+.+.|.|++++++++++ +.|++||++.++.  +++ ++|+|.+
T Consensus       353 Vv~L-~~~nf~~~v~~-~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~--~~~~~~~~I~~  428 (463)
T TIGR00424       353 VVSL-SRPGIENLLKL-EERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQK--EFAKQELQLGS  428 (463)
T ss_pred             eEEC-CHHHHHHHHhh-hcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCcc--HHHHHHcCCCc
Confidence            4444 55688988752 125899999999999999999999999999999754 8999999987542  144 6899999


Q ss_pred             cceEEEEeCCe-EEEEEe-CC-ChHHHHHHHHHH
Q 018973          311 VPTFLFIRDGQ-IRGRYV-GS-GKGELIGEILRY  341 (348)
Q Consensus       311 ~PTl~~~~~G~-~v~~~~-G~-~~~~L~~~l~~~  341 (348)
                      +||+++|++|. ....|. |. +.+.|..||+.+
T Consensus       429 ~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~  462 (463)
T TIGR00424       429 FPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL  462 (463)
T ss_pred             cceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence            99999999885 334565 45 999999998754

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=99.42  E-value=1.8e-13  Score=110.50  Aligned_cols=99  Identities=16%  Similarity=0.273  Sum_probs=71.5

Q ss_pred             hHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCc--cceEEEEe
Q 018973          241 DVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVE--VPTFLFIR  318 (348)
Q Consensus       241 ~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~--~PTl~~~~  318 (348)
                      ++++.++.+...+++++|+||++||++|+.+.|.+.+..........|+.+|++..++  ...++|++.+  +||++++.
T Consensus         7 ~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~--~~~~~~~~~g~~vPt~~f~~   84 (117)
T cd02959           7 TLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEE--PKDEEFSPDGGYIPRILFLD   84 (117)
T ss_pred             eHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCC--chhhhcccCCCccceEEEEC
Confidence            3556666555578999999999999999999999988766543334566677765542  1567899986  99999995


Q ss_pred             -CCeEEEEE---eCC-ChHHHHHHHHHH
Q 018973          319 -DGQIRGRY---VGS-GKGELIGEILRY  341 (348)
Q Consensus       319 -~G~~v~~~---~G~-~~~~L~~~l~~~  341 (348)
                       +|+++.++   .|. +...+...|...
T Consensus        85 ~~Gk~~~~~~~~~~~~~~~~f~~~~~~~  112 (117)
T cd02959          85 PSGDVHPEIINKKGNPNYKYFYSSAAQV  112 (117)
T ss_pred             CCCCCchhhccCCCCccccccCCCHHHH
Confidence             99998754   444 555555555544

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=99.42  E-value=9.4e-13  Score=133.49  Aligned_cols=110  Identities=19%  Similarity=0.362  Sum_probs=92.1

Q ss_pred             ceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHH---HHHHHHhCCcEEEEEEECCCch-hHHHHHHhCC
Q 018973          232 AVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTV---IKLSRQMAGTVVFARMNGDEND-SCMQFLRDMN  307 (348)
Q Consensus       232 ~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~~~~~-~~~~l~~~~~  307 (348)
                      ....+.+.+++++.+++++..+|+++|+||++||++|+.+.+.+   .++.++++ ++.++++|+++++ +.++++++|+
T Consensus       453 ~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~  531 (571)
T PRK00293        453 NFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHYN  531 (571)
T ss_pred             CceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHcC
Confidence            35567788999999887666689999999999999999998865   67777775 5889999998753 4467999999


Q ss_pred             CCccceEEEEe-CCeE--EEEEeCC-ChHHHHHHHHHHh
Q 018973          308 VVEVPTFLFIR-DGQI--RGRYVGS-GKGELIGEILRYQ  342 (348)
Q Consensus       308 V~~~PTl~~~~-~G~~--v~~~~G~-~~~~L~~~l~~~~  342 (348)
                      +.++||+++|+ +|++  +.++.|. +.+++.+++++..
T Consensus       532 v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~  570 (571)
T PRK00293        532 VLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQ  570 (571)
T ss_pred             CCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence            99999999995 8988  4788998 9999999998764

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=99.42  E-value=1.1e-11  Score=125.81  Aligned_cols=200  Identities=13%  Similarity=0.159  Sum_probs=145.9

Q ss_pred             ceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEE
Q 018973          121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFS  200 (348)
Q Consensus       121 v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~  200 (348)
                      +..-...+++++.+.+..+...++.|+.+.|..|..+...|++++...+.+.+...|.++   .++++++|+|...|+|.
T Consensus       348 ~l~~~~~~~l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~---~~~~~~~~~v~~~P~~~  424 (555)
T TIGR03143       348 LLDDSLRQQLVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGE---EPESETLPKITKLPTVA  424 (555)
T ss_pred             ccCHHHHHHHHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEecccc---chhhHhhcCCCcCCEEE
Confidence            333344566777787766777788898889999999999999999776668888888776   45689999999999999


Q ss_pred             Eee-ccccc-cccccCC----CCcccccccccCCCccceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhH
Q 018973          201 FYK-SMEKI-HEEEGIG----PDQLMGDVLYYGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPT  274 (348)
Q Consensus       201 ~~~-~g~~v-~~~~G~~----~~~l~~~v~~~~~~~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~  274 (348)
                      +++ +|+.. -+|.|..    ...+...+...+.....+    + ++..+.++..  ++...+-.|.+++|++|......
T Consensus       425 i~~~~~~~~~i~f~g~P~G~Ef~s~i~~i~~~~~~~~~l----~-~~~~~~i~~~--~~~~~i~v~~~~~C~~Cp~~~~~  497 (555)
T TIGR03143       425 LLDDDGNYTGLKFHGVPSGHELNSFILALYNAAGPGQPL----G-EELLEKIKKI--TKPVNIKIGVSLSCTLCPDVVLA  497 (555)
T ss_pred             EEeCCCcccceEEEecCccHhHHHHHHHHHHhcCCCCCC----C-HHHHHHHHhc--CCCeEEEEEECCCCCCcHHHHHH
Confidence            985 55432 3455532    223443333333322222    2 3333444432  33444556689999999999999


Q ss_pred             HHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCC-ChHHHHHHH
Q 018973          275 VIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS-GKGELIGEI  338 (348)
Q Consensus       275 l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~-~~~~L~~~l  338 (348)
                      +++++.+.+ ++..-.+|..++++   ++++|+|.++|++++  ||+.+  +.|. +.+++.++|
T Consensus       498 ~~~~~~~~~-~i~~~~i~~~~~~~---~~~~~~v~~vP~~~i--~~~~~--~~G~~~~~~~~~~~  554 (555)
T TIGR03143       498 AQRIASLNP-NVEAEMIDVSHFPD---LKDEYGIMSVPAIVV--DDQQV--YFGKKTIEEMLELI  554 (555)
T ss_pred             HHHHHHhCC-CceEEEEECcccHH---HHHhCCceecCEEEE--CCEEE--EeeCCCHHHHHHhh
Confidence            999998875 59999999999988   999999999999988  77754  4587 888888775

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PHA02125 thioredoxin-like protein

Probab=99.42  E-value=4.8e-13  Score=99.30  Aligned_cols=63  Identities=17%  Similarity=0.360  Sum_probs=54.0

Q ss_pred             EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeeccccccccccCCC
Q 018973          143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGP  216 (348)
Q Consensus       143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~~v~~~~G~~~  216 (348)
                      +++|||+||++|+.+.|.|+++.     +.+++||.++   ..+++++|+|+++||++   +|+.++++.|.+.
T Consensus         2 iv~f~a~wC~~Ck~~~~~l~~~~-----~~~~~vd~~~---~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~   64 (75)
T PHA02125          2 IYLFGAEWCANCKMVKPMLANVE-----YTYVDVDTDE---GVELTAKHHIRSLPTLV---NTSTLDRFTGVPR   64 (75)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHh-----heEEeeeCCC---CHHHHHHcCCceeCeEE---CCEEEEEEeCCCC
Confidence            78999999999999999998763     4688999888   55799999999999987   6788888888643

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=99.42  E-value=9.3e-13  Score=133.54  Aligned_cols=96  Identities=16%  Similarity=0.278  Sum_probs=80.6

Q ss_pred             CCCceEecCHHHHHHHHHhcC--CCEEEEEEeCCCCHHHHhhhhHH---HHHHHHcCCcEEEEEeCCCc-hhHHHHHHHc
Q 018973          118 DERVKKVHSIEEFDEALRLAK--NKLVVVEFAASRSLDSSKIYPFM---VDLSRQCNDVEFILVMGDES-EKTKELCERE  191 (348)
Q Consensus       118 ~~~v~~v~s~~~f~~~l~~~~--~k~vvV~F~a~wC~~C~~~~p~l---~~la~~~~~v~f~~vd~d~~-~~~~~l~~~~  191 (348)
                      .....++.+.+++++.+++++  +|+|+|+|||+||++|+.+++..   +++.++++++.++++|+++. ++..+++++|
T Consensus       451 ~~~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~  530 (571)
T PRK00293        451 HLNFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHY  530 (571)
T ss_pred             CCCceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHc
Confidence            346788889999999987643  79999999999999999999875   67788888899999998864 3457899999


Q ss_pred             CcCCCCeEEEee-ccccc--ccccc
Q 018973          192 KIKKVPHFSFYK-SMEKI--HEEEG  213 (348)
Q Consensus       192 ~V~~~Pt~~~~~-~g~~v--~~~~G  213 (348)
                      +|.++||+++|+ +|+++  .++.|
T Consensus       531 ~v~g~Pt~~~~~~~G~~i~~~r~~G  555 (571)
T PRK00293        531 NVLGLPTILFFDAQGQEIPDARVTG  555 (571)
T ss_pred             CCCCCCEEEEECCCCCCcccccccC
Confidence            999999999996 78774  55556

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=99.41  E-value=2e-12  Score=115.64  Aligned_cols=89  Identities=19%  Similarity=0.247  Sum_probs=74.3

Q ss_pred             CcEEEEEEeC---CCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEE-EEe
Q 018973          253 QKLIVLDVGL---KHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRG-RYV  327 (348)
Q Consensus       253 ~k~vvV~F~a---~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~-~~~  327 (348)
                      +...++.|++   +||++|+.+.|.+++++++++. .+.++.+|.+++++   ++++|+|.++||+++|++|+.+. ++.
T Consensus        19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~---l~~~~~V~~~Pt~~~f~~g~~~~~~~~   95 (215)
T TIGR02187        19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKE---EAEKYGVERVPTTIILEEGKDGGIRYT   95 (215)
T ss_pred             CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHH---HHHHcCCCccCEEEEEeCCeeeEEEEe
Confidence            4445666877   9999999999999999999853 24566666667777   99999999999999999999984 899


Q ss_pred             CC-ChHHHHHHHHHHhCC
Q 018973          328 GS-GKGELIGEILRYQGV  344 (348)
Q Consensus       328 G~-~~~~L~~~l~~~~~~  344 (348)
                      |. +.++|.++|+.+++.
T Consensus        96 G~~~~~~l~~~i~~~~~~  113 (215)
T TIGR02187        96 GIPAGYEFAALIEDIVRV  113 (215)
T ss_pred             ecCCHHHHHHHHHHHHHh
Confidence            99 888999999888643

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>PLN02309 5'-adenylylsulfate reductase

Probab=99.41  E-value=1.7e-12  Score=126.92  Aligned_cols=104  Identities=19%  Similarity=0.333  Sum_probs=83.4

Q ss_pred             eeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECC-CchhHHHHHH-hCCCC
Q 018973          233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGD-ENDSCMQFLR-DMNVV  309 (348)
Q Consensus       233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~-~~~~~~~l~~-~~~V~  309 (348)
                      +..+ +.+++++++... ..+++++|+||++||++|+.+.|.|.++++++.+ .+.|+++|++ .+.+   +++ +|+|.
T Consensus       347 Vv~L-t~~nfe~ll~~~-~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~---la~~~~~I~  421 (457)
T PLN02309        347 VVAL-SRAGIENLLKLE-NRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKE---FAKQELQLG  421 (457)
T ss_pred             cEEC-CHHHHHHHHHhh-cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchH---HHHhhCCCc
Confidence            4443 567888877521 2588999999999999999999999999999865 4999999999 5554   776 69999


Q ss_pred             ccceEEEEeCCe-EEEEEeC-C-ChHHHHHHHHHH
Q 018973          310 EVPTFLFIRDGQ-IRGRYVG-S-GKGELIGEILRY  341 (348)
Q Consensus       310 ~~PTl~~~~~G~-~v~~~~G-~-~~~~L~~~l~~~  341 (348)
                      ++||+++|++|. ....|.| . +.+.|..||+.+
T Consensus       422 ~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~  456 (457)
T PLN02309        422 SFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL  456 (457)
T ss_pred             eeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence            999999998775 3345554 4 999999999864

>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]

Probab=99.38  E-value=8.3e-13  Score=118.83  Aligned_cols=100  Identities=16%  Similarity=0.309  Sum_probs=82.5

Q ss_pred             hhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC---cEEEEEEECCCchhHHHHHHhCCCCccceEEE
Q 018973          240 EDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG---TVVFARMNGDENDSCMQFLRDMNVVEVPTFLF  316 (348)
Q Consensus       240 ~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~---~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~  316 (348)
                      +++++..++. .++..++|.||+|||++|+++.|.|.++.-++++   -++++++|++..+.   ++.+|+|+++||+.+
T Consensus        31 eDLddkFkdn-kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~a---iAnefgiqGYPTIk~  106 (468)
T KOG4277|consen   31 EDLDDKFKDN-KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPA---IANEFGIQGYPTIKF  106 (468)
T ss_pred             hhhhHHhhhc-ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchh---hHhhhccCCCceEEE
Confidence            3344444433 2578999999999999999999999999877643   38999999999998   999999999999999


Q ss_pred             EeCCeEEEEEeCCChHHHHHHHHHHhC
Q 018973          317 IRDGQIRGRYVGSGKGELIGEILRYQG  343 (348)
Q Consensus       317 ~~~G~~v~~~~G~~~~~L~~~l~~~~~  343 (348)
                      +++|..+....|..++.++++-.+..+
T Consensus       107 ~kgd~a~dYRG~R~Kd~iieFAhR~a~  133 (468)
T KOG4277|consen  107 FKGDHAIDYRGGREKDAIIEFAHRCAA  133 (468)
T ss_pred             ecCCeeeecCCCccHHHHHHHHHhccc
Confidence            999987765555599999999887654

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=99.37  E-value=2.2e-12  Score=103.12  Aligned_cols=96  Identities=10%  Similarity=0.101  Sum_probs=73.6

Q ss_pred             ChhhHHHHhhhcccCCcEEEEEEeC--CCCh---hhhhhhhHHHHHHHHhCCcEEEEEEECCCchh--HHHHHHhCCCC-
Q 018973          238 SKEDVEKLIDDHKVDQKLIVLDVGL--KHCG---PCVKVYPTVIKLSRQMAGTVVFARMNGDENDS--CMQFLRDMNVV-  309 (348)
Q Consensus       238 s~~~~~~~l~~~~~~~k~vvV~F~a--~wC~---~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~--~~~l~~~~~V~-  309 (348)
                      +.++|++.+..    .+.++|.||+  |||+   .|+++.|.+.+.+    +.+.++.||+++..+  .++|+++|+|+ 
T Consensus         7 ~~~nF~~~v~~----~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa----~~v~lakVd~~d~~~~~~~~L~~~y~I~~   78 (116)
T cd03007           7 DTVTFYKVIPK----FKYSLVKFDTAYPYGEKHEAFTRLAESSASAT----DDLLVAEVGIKDYGEKLNMELGERYKLDK   78 (116)
T ss_pred             ChhhHHHHHhc----CCcEEEEEeCCCCCCCChHHHHHHHHHHHhhc----CceEEEEEecccccchhhHHHHHHhCCCc
Confidence            56789998875    5889999999  8888   6666665555433    248899999954221  23499999999 


Q ss_pred             -ccceEEEEeCCe--EEEEEeCC--ChHHHHHHHHHH
Q 018973          310 -EVPTFLFIRDGQ--IRGRYVGS--GKGELIGEILRY  341 (348)
Q Consensus       310 -~~PTl~~~~~G~--~v~~~~G~--~~~~L~~~l~~~  341 (348)
                       ++||+.+|++|+  ....|.|.  +.+.|.++|.++
T Consensus        79 ~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~  115 (116)
T cd03007          79 ESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN  115 (116)
T ss_pred             CCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence             999999999985  33567773  899999999875

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=99.36  E-value=2e-12  Score=103.19  Aligned_cols=87  Identities=24%  Similarity=0.334  Sum_probs=67.4

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHH---HHHHhCCcEEEEEEECCCch-----------------hHHHHHHhCCCCcc
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIK---LSRQMAGTVVFARMNGDEND-----------------SCMQFLRDMNVVEV  311 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~---la~~~~~~v~~~~vd~~~~~-----------------~~~~l~~~~~V~~~  311 (348)
                      .+++++++||++||++|+++.+.+.+   +...+.+++.++.++++...                 ...+++++|+|.++
T Consensus         4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gt   83 (112)
T PF13098_consen    4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGT   83 (112)
T ss_dssp             TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCcc
Confidence            68999999999999999999988875   44445456888888887543                 12469999999999


Q ss_pred             ceEEEEe-CCeEEEEEeCC-ChHHHHHHH
Q 018973          312 PTFLFIR-DGQIRGRYVGS-GKGELIGEI  338 (348)
Q Consensus       312 PTl~~~~-~G~~v~~~~G~-~~~~L~~~l  338 (348)
                      ||++++. +|+++.++.|. ++++|.+.|
T Consensus        84 Pt~~~~d~~G~~v~~~~G~~~~~~l~~~L  112 (112)
T PF13098_consen   84 PTIVFLDKDGKIVYRIPGYLSPEELLKML  112 (112)
T ss_dssp             SEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred             CEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence            9999995 89999999999 999998765

...

>PHA02125 thioredoxin-like protein

Probab=99.36  E-value=5.8e-12  Score=93.45  Aligned_cols=70  Identities=19%  Similarity=0.423  Sum_probs=58.5

Q ss_pred             EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCC--ChHHH
Q 018973          257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS--GKGEL  334 (348)
Q Consensus       257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~--~~~~L  334 (348)
                      +++||++||++|+.+.|.|.++.      +.++.+|.+++.+   ++++|+|.++||++   +|+.+.++.|.  +..+|
T Consensus         2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~~~~---l~~~~~v~~~PT~~---~g~~~~~~~G~~~~~~~l   69 (75)
T PHA02125          2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDEGVE---LTAKHHIRSLPTLV---NTSTLDRFTGVPRNVAEL   69 (75)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCCCHH---HHHHcCCceeCeEE---CCEEEEEEeCCCCcHHHH
Confidence            78999999999999999987652      4688999888776   99999999999987   78888999998  33555


Q ss_pred             HHHH
Q 018973          335 IGEI  338 (348)
Q Consensus       335 ~~~l  338 (348)
                      .+.|
T Consensus        70 ~~~~   73 (75)
T PHA02125         70 KEKL   73 (75)
T ss_pred             HHHh
Confidence            5543

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=99.34  E-value=5e-12  Score=105.56  Aligned_cols=76  Identities=18%  Similarity=0.278  Sum_probs=60.1

Q ss_pred             HHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC---------CcEEEEEeCCCchh---------------------
Q 018973          134 LRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN---------DVEFILVMGDESEK---------------------  183 (348)
Q Consensus       134 l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~---------~v~f~~vd~d~~~~---------------------  183 (348)
                      +++.++++|+|+|||+||+||+...|.|.++++++.         ++.++.|+.|+..+                     
T Consensus        20 ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~   99 (146)
T cd03008          20 VARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDE   99 (146)
T ss_pred             HHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccch
Confidence            344579999999999999999999999999876442         48899999886421                     


Q ss_pred             -HHHHHHHcCcCCCCeEEEee-cccccc
Q 018973          184 -TKELCEREKIKKVPHFSFYK-SMEKIH  209 (348)
Q Consensus       184 -~~~l~~~~~V~~~Pt~~~~~-~g~~v~  209 (348)
                       ...++++|+|.++||.+++. +|+.+.
T Consensus       100 ~~~~l~~~y~v~~iPt~vlId~~G~Vv~  127 (146)
T cd03008         100 FRRELEAQFSVEELPTVVVLKPDGDVLA  127 (146)
T ss_pred             HHHHHHHHcCCCCCCEEEEECCCCcEEe
Confidence             13688899999999977764 777765

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.34  E-value=2.9e-12  Score=100.57  Aligned_cols=68  Identities=16%  Similarity=0.220  Sum_probs=62.3

Q ss_pred             CCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcC--CCCeEEEeec--ccccc
Q 018973          139 NKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIK--KVPHFSFYKS--MEKIH  209 (348)
Q Consensus       139 ~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~--~~Pt~~~~~~--g~~v~  209 (348)
                      ++++++.|+++||++|+.+.|.+++++++|.+ +.|+.||+++   ..++++.|||.  .+|+++++++  |+...
T Consensus        12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~---~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~   84 (103)
T cd02982          12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADD---FGRHLEYFGLKEEDLPVIAIINLSDGKKYL   84 (103)
T ss_pred             CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHh---hHHHHHHcCCChhhCCEEEEEecccccccC
Confidence            68999999999999999999999999999977 9999999999   55699999999  9999999998  65544

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=99.31  E-value=9.4e-12  Score=102.26  Aligned_cols=74  Identities=20%  Similarity=0.291  Sum_probs=60.3

Q ss_pred             cCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC----CcEEEEEeCCCch---------------------hHHHHHHHc
Q 018973          137 AKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN----DVEFILVMGDESE---------------------KTKELCERE  191 (348)
Q Consensus       137 ~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~----~v~f~~vd~d~~~---------------------~~~~l~~~~  191 (348)
                      .++++|+|+||++||++|+.+.|.+.++++++.    ++.++.|++|...                     ....+++.|
T Consensus        16 ~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (131)
T cd03009          16 LEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTF   95 (131)
T ss_pred             hCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHc
Confidence            368999999999999999999999999988763    4777777777532                     124688999


Q ss_pred             CcCCCCeEEEee-ccccccc
Q 018973          192 KIKKVPHFSFYK-SMEKIHE  210 (348)
Q Consensus       192 ~V~~~Pt~~~~~-~g~~v~~  210 (348)
                      +|.++|+++++. +|+.+.+
T Consensus        96 ~v~~~P~~~lid~~G~i~~~  115 (131)
T cd03009          96 KIEGIPTLIILDADGEVVTT  115 (131)
T ss_pred             CCCCCCEEEEECCCCCEEcc
Confidence            999999988885 7877754

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=99.29  E-value=2.8e-11  Score=105.66  Aligned_cols=88  Identities=26%  Similarity=0.312  Sum_probs=70.5

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch-hHHH-------------------HHHhCCCCcc
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND-SCMQ-------------------FLRDMNVVEV  311 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~-~~~~-------------------l~~~~~V~~~  311 (348)
                      .+++++|+||++||++|+++.|.+.++.++   .+.++.|+.++.. +.++                   +.+.|++.++
T Consensus        67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~  143 (185)
T PRK15412         67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGA  143 (185)
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcC
Confidence            478999999999999999999999998653   4778888875432 2221                   3446889999


Q ss_pred             c-eEEEEeCCeEEEEEeCC-ChHHHHHHHHHHh
Q 018973          312 P-TFLFIRDGQIRGRYVGS-GKGELIGEILRYQ  342 (348)
Q Consensus       312 P-Tl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~  342 (348)
                      | |+++.++|+++.++.|. ++++|.+.|+.++
T Consensus       144 P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~  176 (185)
T PRK15412        144 PETFLIDGNGIIRYRHAGDLNPRVWESEIKPLW  176 (185)
T ss_pred             CeEEEECCCceEEEEEecCCCHHHHHHHHHHHH
Confidence            9 56666899999999999 8888888888765

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=99.29  E-value=1.4e-11  Score=101.55  Aligned_cols=76  Identities=21%  Similarity=0.283  Sum_probs=60.5

Q ss_pred             hcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC----CcEEEEEeCCCch----------------------hHHHHHH
Q 018973          136 LAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN----DVEFILVMGDESE----------------------KTKELCE  189 (348)
Q Consensus       136 ~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~----~v~f~~vd~d~~~----------------------~~~~l~~  189 (348)
                      +.++++|+|+||++||++|+...|.|+++++++.    ++.++.|++|+.+                      ....+.+
T Consensus        14 ~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~   93 (132)
T cd02964          14 ALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEK   93 (132)
T ss_pred             HhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHH
Confidence            3368999999999999999999999999988764    4778888777532                      1235777


Q ss_pred             HcCcCCCCeEEEee-cccccccc
Q 018973          190 REKIKKVPHFSFYK-SMEKIHEE  211 (348)
Q Consensus       190 ~~~V~~~Pt~~~~~-~g~~v~~~  211 (348)
                      .|+|.++||++++. +|+.+.+.
T Consensus        94 ~~~v~~iPt~~lid~~G~iv~~~  116 (132)
T cd02964          94 QFKVEGIPTLVVLKPDGDVVTTN  116 (132)
T ss_pred             HcCCCCCCEEEEECCCCCEEchh
Confidence            89999999988885 77776543

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=99.29  E-value=8.1e-12  Score=93.80  Aligned_cols=65  Identities=15%  Similarity=0.123  Sum_probs=55.6

Q ss_pred             EEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeecccccccccc
Q 018973          142 VVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEG  213 (348)
Q Consensus       142 vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~~v~~~~G  213 (348)
                      .|..||++||++|+.+.|.+++++++++. +.+++||.++   ..+++++|||+++||+++  +|+.  ++.|
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~---~~~~~~~~~v~~vPt~~~--~g~~--~~~G   67 (82)
T TIGR00411         2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVME---NPQKAMEYGIMAVPAIVI--NGDV--EFIG   67 (82)
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCcc---CHHHHHHcCCccCCEEEE--CCEE--EEec
Confidence            46789999999999999999999999865 8999999988   456899999999999986  6652  4555

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=99.29  E-value=1.3e-11  Score=100.85  Aligned_cols=78  Identities=17%  Similarity=0.080  Sum_probs=63.0

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCc--------------------hhHHHHHHHcCcCCCC
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDES--------------------EKTKELCEREKIKKVP  197 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~--------------------~~~~~l~~~~~V~~~P  197 (348)
                      ++++++|+||++||++|+...|.|+++.+++ ++.++.|+.++.                    +...++++.|+|.++|
T Consensus        24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~-~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~P  102 (127)
T cd03010          24 KGKPYLLNVWASWCAPCREEHPVLMALARQG-RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGVP  102 (127)
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc-CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCCC
Confidence            5899999999999999999999999999887 478887775321                    1234678889999999


Q ss_pred             e-EEEeeccccccccccCCC
Q 018973          198 H-FSFYKSMEKIHEEEGIGP  216 (348)
Q Consensus       198 t-~~~~~~g~~v~~~~G~~~  216 (348)
                      + +++.++|+.+.++.|...
T Consensus       103 ~~~~ld~~G~v~~~~~G~~~  122 (127)
T cd03010         103 ETFLIDGDGIIRYKHVGPLT  122 (127)
T ss_pred             eEEEECCCceEEEEEeccCC
Confidence            5 556679999998888543

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=99.28  E-value=2.5e-11  Score=90.24  Aligned_cols=72  Identities=17%  Similarity=0.288  Sum_probs=59.6

Q ss_pred             EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCC--ChHHH
Q 018973          257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS--GKGEL  334 (348)
Q Consensus       257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~--~~~~L  334 (348)
                      .|.||++||++|+.+.|.+++++++++.++.++.+|  + .+   .+.+|++.++||+++  ||+.+  +.|.  +.++|
T Consensus         2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~--~-~~---~a~~~~v~~vPti~i--~G~~~--~~G~~~~~~~l   71 (76)
T TIGR00412         2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT--D-MN---EILEAGVTATPGVAV--DGELV--IMGKIPSKEEI   71 (76)
T ss_pred             EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC--C-HH---HHHHcCCCcCCEEEE--CCEEE--EEeccCCHHHH
Confidence            378999999999999999999999997778888777  2 22   477899999999999  99877  6775  55777


Q ss_pred             HHHH
Q 018973          335 IGEI  338 (348)
Q Consensus       335 ~~~l  338 (348)
                      .+++
T Consensus        72 ~~~l   75 (76)
T TIGR00412        72 KEIL   75 (76)
T ss_pred             HHHh
Confidence            7665

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=99.28  E-value=8.6e-12  Score=112.60  Aligned_cols=99  Identities=19%  Similarity=0.391  Sum_probs=86.9

Q ss_pred             hhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhC-----CcEEEEEEECCCchhHHHHHHhCCCCccce
Q 018973          239 KEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMA-----GTVVFARMNGDENDSCMQFLRDMNVVEVPT  313 (348)
Q Consensus       239 ~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~-----~~v~~~~vd~~~~~~~~~l~~~~~V~~~PT  313 (348)
                      .++.+.++..    +..++|.|||+||+..+.+.|.+++.+..++     +++.+++||+++++.   ++.+|.|..+||
T Consensus         3 ~~N~~~il~s----~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~---ia~ky~I~KyPT   75 (375)
T KOG0912|consen    3 SENIDSILDS----NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDD---IADKYHINKYPT   75 (375)
T ss_pred             cccHHHhhcc----ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhH---HhhhhccccCce
Confidence            3556677763    6999999999999999999999999887763     569999999999988   999999999999


Q ss_pred             EEEEeCCeEEE-EEeCC-ChHHHHHHHHHHhCC
Q 018973          314 FLFIRDGQIRG-RYVGS-GKGELIGEILRYQGV  344 (348)
Q Consensus       314 l~~~~~G~~v~-~~~G~-~~~~L~~~l~~~~~~  344 (348)
                      +-+|++|.... .|.|. +.+.|.++|++.+..
T Consensus        76 lKvfrnG~~~~rEYRg~RsVeaL~efi~kq~s~  108 (375)
T KOG0912|consen   76 LKVFRNGEMMKREYRGQRSVEALIEFIEKQLSD  108 (375)
T ss_pred             eeeeeccchhhhhhccchhHHHHHHHHHHHhcc
Confidence            99999999887 57788 999999999987653

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=99.26  E-value=3.7e-11  Score=92.93  Aligned_cols=68  Identities=29%  Similarity=0.402  Sum_probs=55.5

Q ss_pred             CCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC---CcEEEEEeCCCch----------------------hHHHHHHHcCc
Q 018973          139 NKLVVVEFAASRSLDSSKIYPFMVDLSRQCN---DVEFILVMGDESE----------------------KTKELCEREKI  193 (348)
Q Consensus       139 ~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~---~v~f~~vd~d~~~----------------------~~~~l~~~~~V  193 (348)
                      ||+++|+|||+||++|+...|.|.++.++|+   ++.|+.|..|+..                      ...++.+.|+|
T Consensus         1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i   80 (95)
T PF13905_consen    1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI   80 (95)
T ss_dssp             TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence            6899999999999999999999999999999   5999999988641                      23578889999


Q ss_pred             CCCCeEEEee-ccc
Q 018973          194 KKVPHFSFYK-SME  206 (348)
Q Consensus       194 ~~~Pt~~~~~-~g~  206 (348)
                      .++|+++++. +|+
T Consensus        81 ~~iP~~~lld~~G~   94 (95)
T PF13905_consen   81 NGIPTLVLLDPDGK   94 (95)
T ss_dssp             TSSSEEEEEETTSB
T ss_pred             CcCCEEEEECCCCC
Confidence            9999988775 454

...

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=99.26  E-value=8.2e-11  Score=95.68  Aligned_cols=78  Identities=14%  Similarity=0.107  Sum_probs=60.5

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHH---HHHHHHhCCcEEEEEEECCCchhHHHHH-----HhCCCCccceEEEE-eCCeE
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTV---IKLSRQMAGTVVFARMNGDENDSCMQFL-----RDMNVVEVPTFLFI-RDGQI  322 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~~~~~~~~~l~-----~~~~V~~~PTl~~~-~~G~~  322 (348)
                      .+|+++|+|+++||++|+.+.+..   .++.+.+..++.++++|.++.++..+..     ..|++.++||++++ .+|++
T Consensus        14 ~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~   93 (124)
T cd02955          14 EDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKP   93 (124)
T ss_pred             cCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCE
Confidence            589999999999999999997632   4666666557999999999877632211     13699999999888 68999


Q ss_pred             EEEEeCC
Q 018973          323 RGRYVGS  329 (348)
Q Consensus       323 v~~~~G~  329 (348)
                      +....+.
T Consensus        94 ~~~~~~~  100 (124)
T cd02955          94 FFGGTYF  100 (124)
T ss_pred             Eeeeeec
Confidence            9766554

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=99.26  E-value=3.8e-11  Score=119.11  Aligned_cols=90  Identities=13%  Similarity=0.251  Sum_probs=72.6

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhC-CcEEEEEEECCC-----c--------------------hhHHHHHHh
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMA-GTVVFARMNGDE-----N--------------------DSCMQFLRD  305 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~-----~--------------------~~~~~l~~~  305 (348)
                      .+++++|+|||+||++|+.+.|.|.+++++++ +++.++.|..+.     .                    +....+++.
T Consensus        55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~  134 (521)
T PRK14018         55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQS  134 (521)
T ss_pred             CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHHH
Confidence            47999999999999999999999999999886 347777665310     0                    011237889


Q ss_pred             CCCCccceE-EEEeCCeEEEEEeCC-ChHHHHHHHHHH
Q 018973          306 MNVVEVPTF-LFIRDGQIRGRYVGS-GKGELIGEILRY  341 (348)
Q Consensus       306 ~~V~~~PTl-~~~~~G~~v~~~~G~-~~~~L~~~l~~~  341 (348)
                      |+|.++||+ +++++|+++.++.|. +.++|.++|+..
T Consensus       135 fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~  172 (521)
T PRK14018        135 LNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRNP  172 (521)
T ss_pred             cCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence            999999987 555899999999999 999999998843

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=99.26  E-value=1.4e-11  Score=89.12  Aligned_cols=59  Identities=8%  Similarity=0.102  Sum_probs=53.0

Q ss_pred             EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeeccc
Q 018973          143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSME  206 (348)
Q Consensus       143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~  206 (348)
                      ++.|+++||++|+.+.+.+++++++++++.|..+|+++   .++++++|||.++||+++  +|+
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~---~~~l~~~~~i~~vPti~i--~~~   61 (67)
T cd02973           3 IEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAE---FPDLADEYGVMSVPAIVI--NGK   61 (67)
T ss_pred             EEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEccc---CHhHHHHcCCcccCEEEE--CCE
Confidence            67899999999999999999999988889999999998   456999999999999876  454

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=99.26  E-value=4.8e-11  Score=103.05  Aligned_cols=89  Identities=20%  Similarity=0.318  Sum_probs=71.2

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch-hHH-------------------HHHHhCCCCcc
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND-SCM-------------------QFLRDMNVVEV  311 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~-~~~-------------------~l~~~~~V~~~  311 (348)
                      .+++++|+||++||++|+++.|.++++.+.   ++.++.|+.++.. +.+                   .+.++|++.++
T Consensus        62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~  138 (173)
T TIGR00385        62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGA  138 (173)
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeC
Confidence            478999999999999999999999988754   3777777764321 111                   25667899999


Q ss_pred             ce-EEEEeCCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973          312 PT-FLFIRDGQIRGRYVGS-GKGELIGEILRYQG  343 (348)
Q Consensus       312 PT-l~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~  343 (348)
                      |+ +++.++|+++.++.|. +.+++.++|+++++
T Consensus       139 P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~  172 (173)
T TIGR00385       139 PETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME  172 (173)
T ss_pred             CeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence            95 6666899999999998 99999999998864

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=99.26  E-value=2.5e-11  Score=93.04  Aligned_cols=74  Identities=12%  Similarity=0.130  Sum_probs=64.3

Q ss_pred             HHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeecccccc
Q 018973          131 DEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIH  209 (348)
Q Consensus       131 ~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~~v~  209 (348)
                      .+.+++.++..-+..|+++||++|+.+.+.+++++++++++.+..+|.++   .++++++|||.++||+++  +|+.+.
T Consensus         4 ~~~~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~---~~e~a~~~~V~~vPt~vi--dG~~~~   77 (89)
T cd03026           4 LEQIRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGAL---FQDEVEERGIMSVPAIFL--NGELFG   77 (89)
T ss_pred             HHHHHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHh---CHHHHHHcCCccCCEEEE--CCEEEE
Confidence            34555556777899999999999999999999999999999999999998   556999999999999975  787665

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=99.25  E-value=2.8e-11  Score=98.83  Aligned_cols=81  Identities=32%  Similarity=0.405  Sum_probs=63.9

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch--------------------hHHHHHHhCCCCcc
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND--------------------SCMQFLRDMNVVEV  311 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~--------------------~~~~l~~~~~V~~~  311 (348)
                      .+++++|+||++||++|+.+.|.+.++.+.+  .+.++.|+.+...                    ....+++.|++.++
T Consensus        24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~--~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~  101 (127)
T cd03010          24 KGKPYLLNVWASWCAPCREEHPVLMALARQG--RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGV  101 (127)
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc--CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCC
Confidence            4789999999999999999999999998886  3777777753211                    11237778999999


Q ss_pred             c-eEEEEeCCeEEEEEeCC-ChHHH
Q 018973          312 P-TFLFIRDGQIRGRYVGS-GKGEL  334 (348)
Q Consensus       312 P-Tl~~~~~G~~v~~~~G~-~~~~L  334 (348)
                      | ++++.++|+++.++.|. +++.|
T Consensus       102 P~~~~ld~~G~v~~~~~G~~~~~~~  126 (127)
T cd03010         102 PETFLIDGDGIIRYKHVGPLTPEVW  126 (127)
T ss_pred             CeEEEECCCceEEEEEeccCChHhc
Confidence            9 56666899999999998 76654

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=99.25  E-value=3.7e-11  Score=97.71  Aligned_cols=87  Identities=13%  Similarity=0.079  Sum_probs=63.5

Q ss_pred             CHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHH---HHHHHH-cCCcEEEEEeCCCchhHHHHH-----HHcCcCCC
Q 018973          126 SIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFM---VDLSRQ-CNDVEFILVMGDESEKTKELC-----EREKIKKV  196 (348)
Q Consensus       126 s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l---~~la~~-~~~v~f~~vd~d~~~~~~~l~-----~~~~V~~~  196 (348)
                      +.+.++++.+  .+|+|+|+|+|+||++|+.|.+..   .++++. ..++.++++|.++.++..+..     ..||+.++
T Consensus         4 ~~eal~~Ak~--~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~   81 (124)
T cd02955           4 GEEAFEKARR--EDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGW   81 (124)
T ss_pred             CHHHHHHHHH--cCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCC
Confidence            4566666665  799999999999999999998732   245554 346899999998854322111     13699999


Q ss_pred             CeEEEee-ccccccccccC
Q 018973          197 PHFSFYK-SMEKIHEEEGI  214 (348)
Q Consensus       197 Pt~~~~~-~g~~v~~~~G~  214 (348)
                      ||++|+. +|+.+....+.
T Consensus        82 Pt~vfl~~~G~~~~~~~~~  100 (124)
T cd02955          82 PLNVFLTPDLKPFFGGTYF  100 (124)
T ss_pred             CEEEEECCCCCEEeeeeec
Confidence            9999884 68888776553

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=99.25  E-value=1.2e-11  Score=91.93  Aligned_cols=62  Identities=10%  Similarity=0.042  Sum_probs=51.9

Q ss_pred             EEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeeccccccccccC
Q 018973          143 VVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGI  214 (348)
Q Consensus       143 vV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~~v~~~~G~  214 (348)
                      .|+||++||++|+.+.|.+++++++++. +.|++||  +   . +.+.+|||.++||+++  +|+.+  +.|.
T Consensus         2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~--~---~-~~a~~~~v~~vPti~i--~G~~~--~~G~   64 (76)
T TIGR00412         2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT--D---M-NEILEAGVTATPGVAV--DGELV--IMGK   64 (76)
T ss_pred             EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC--C---H-HHHHHcCCCcCCEEEE--CCEEE--EEec
Confidence            3789999999999999999999999976 8888877  3   1 2377899999999999  88776  5553

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=99.24  E-value=1.1e-10  Score=93.81  Aligned_cols=101  Identities=13%  Similarity=0.236  Sum_probs=82.3

Q ss_pred             hHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhH-H--HHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEE
Q 018973          241 DVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPT-V--IKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFI  317 (348)
Q Consensus       241 ~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~-l--~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~  317 (348)
                      .+++.++.+...+|+++|+|+++||++|+.+... |  .++.+.+.+++.++.+|+++ ++..++++.|++.++|+++++
T Consensus         5 s~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~-~e~~~~~~~~~~~~~P~~~~i   83 (114)
T cd02958           5 SFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDS-SEGQRFLQSYKVDKYPHIAII   83 (114)
T ss_pred             CHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCC-ccHHHHHHHhCccCCCeEEEE
Confidence            4566666666679999999999999999998764 3  55556665568888999876 345679999999999998888


Q ss_pred             e--CCeEEEEEeCC-ChHHHHHHHHHHh
Q 018973          318 R--DGQIRGRYVGS-GKGELIGEILRYQ  342 (348)
Q Consensus       318 ~--~G~~v~~~~G~-~~~~L~~~l~~~~  342 (348)
                      .  +|+++.++.|. ++++|...|++..
T Consensus        84 ~~~~g~~l~~~~G~~~~~~f~~~L~~~~  111 (114)
T cd02958          84 DPRTGEVLKVWSGNITPEDLLSQLIEFL  111 (114)
T ss_pred             eCccCcEeEEEcCCCCHHHHHHHHHHHH
Confidence            4  79999999999 9999999988764

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=99.23  E-value=6.3e-11  Score=98.93  Aligned_cols=74  Identities=15%  Similarity=0.331  Sum_probs=59.5

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC--------cEEEEEEECCCchh----------------------HHH
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG--------TVVFARMNGDENDS----------------------CMQ  301 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--------~v~~~~vd~~~~~~----------------------~~~  301 (348)
                      .+++++|+|||+||++|+++.|.|.++.+++.+        ++.++.|+.++..+                      -..
T Consensus        24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~  103 (146)
T cd03008          24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE  103 (146)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence            579999999999999999999999998876542        48889998875432                      124


Q ss_pred             HHHhCCCCccceEEEE-eCCeEEEE
Q 018973          302 FLRDMNVVEVPTFLFI-RDGQIRGR  325 (348)
Q Consensus       302 l~~~~~V~~~PTl~~~-~~G~~v~~  325 (348)
                      ++++|++.++||.+++ ++|+++.+
T Consensus       104 l~~~y~v~~iPt~vlId~~G~Vv~~  128 (146)
T cd03008         104 LEAQFSVEELPTVVVLKPDGDVLAA  128 (146)
T ss_pred             HHHHcCCCCCCEEEEECCCCcEEee
Confidence            7778899999987666 68998865

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=99.22  E-value=1.6e-11  Score=104.15  Aligned_cols=99  Identities=18%  Similarity=0.247  Sum_probs=92.1

Q ss_pred             CCCCCCCCCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHH
Q 018973          111 GTKNAPRDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCER  190 (348)
Q Consensus       111 ~~~~~~~~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~  190 (348)
                      ..+...++|.+.+|.++.+|-+...  +..-||++||-+.-..|+.|..+|+.||+.|-+.+|++||+..+|-   |+.+
T Consensus        58 ~~~~~~GhG~y~ev~~Ekdf~~~~~--kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~PF---lv~k  132 (211)
T KOG1672|consen   58 KEWLSKGHGEYEEVASEKDFFEEVK--KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAPF---LVTK  132 (211)
T ss_pred             HHHHHcCCceEEEeccHHHHHHHhh--cCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccCce---eeee
Confidence            3356788999999999999999987  6788999999999999999999999999999999999999999765   9999


Q ss_pred             cCcCCCCeEEEeeccccccccccC
Q 018973          191 EKIKKVPHFSFYKSMEKIHEEEGI  214 (348)
Q Consensus       191 ~~V~~~Pt~~~~~~g~~v~~~~G~  214 (348)
                      ++|+.+|++.+|++|+.+.+++|.
T Consensus       133 L~IkVLP~v~l~k~g~~~D~iVGF  156 (211)
T KOG1672|consen  133 LNIKVLPTVALFKNGKTVDYVVGF  156 (211)
T ss_pred             eeeeEeeeEEEEEcCEEEEEEeeH
Confidence            999999999999999999999993

>TIGR02740 TraF-like TraF-like protein

Probab=99.22  E-value=3e-11  Score=111.48  Aligned_cols=77  Identities=14%  Similarity=0.152  Sum_probs=61.8

Q ss_pred             HHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCch--------hHHHHHHHcCcCCCCeEEEee
Q 018973          132 EALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESE--------KTKELCEREKIKKVPHFSFYK  203 (348)
Q Consensus       132 ~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~--------~~~~l~~~~~V~~~Pt~~~~~  203 (348)
                      ..+++..++++||+|||+||++|+.+.|.|++++++|+ +.++.|++|...        ....++++|||+.+||+++++
T Consensus       159 ~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~  237 (271)
T TIGR02740       159 RVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLAD  237 (271)
T ss_pred             HHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC-cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEE
Confidence            44666678999999999999999999999999999996 666666665421        124589999999999999997


Q ss_pred             c-ccccc
Q 018973          204 S-MEKIH  209 (348)
Q Consensus       204 ~-g~~v~  209 (348)
                      . |+.+.
T Consensus       238 ~~~~~v~  244 (271)
T TIGR02740       238 PDPNQFT  244 (271)
T ss_pred             CCCCEEE
Confidence            5 65554

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=99.21  E-value=1.4e-10  Score=97.91  Aligned_cols=88  Identities=13%  Similarity=0.185  Sum_probs=64.5

Q ss_pred             CcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch---------hHHHHH-HhC---CCCccceEEEE-e
Q 018973          253 QKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND---------SCMQFL-RDM---NVVEVPTFLFI-R  318 (348)
Q Consensus       253 ~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~---------~~~~l~-~~~---~V~~~PTl~~~-~  318 (348)
                      ++..+|+||++||++|+++.|.+++++++++  +.++.|+.++..         ...+.. +.|   ++.++||.+++ +
T Consensus        50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~  127 (153)
T TIGR02738        50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNV  127 (153)
T ss_pred             CCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeC
Confidence            4567999999999999999999999999984  455555555421         001233 345   88999976555 6


Q ss_pred             CCeE-EEEEeCC-ChHHHHHHHHHHh
Q 018973          319 DGQI-RGRYVGS-GKGELIGEILRYQ  342 (348)
Q Consensus       319 ~G~~-v~~~~G~-~~~~L~~~l~~~~  342 (348)
                      +|++ +.++.|. +.++|.+.|++++
T Consensus       128 ~G~~i~~~~~G~~s~~~l~~~I~~ll  153 (153)
T TIGR02738       128 NTRKAYPVLQGAVDEAELANRMDEIL  153 (153)
T ss_pred             CCCEEEEEeecccCHHHHHHHHHHhC
Confidence            7665 5578899 9999998888753

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>TIGR02740 TraF-like TraF-like protein

Probab=99.20  E-value=1.9e-10  Score=106.10  Aligned_cols=90  Identities=13%  Similarity=0.129  Sum_probs=70.5

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch--------hHHHHHHhCCCCccceEEEEeC-CeE
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND--------SCMQFLRDMNVVEVPTFLFIRD-GQI  322 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~--------~~~~l~~~~~V~~~PTl~~~~~-G~~  322 (348)
                      .+++++|+||++||++|+.+.|.|.+++++++  +.++.|++|...        ....++++|||.++||++++++ |+.
T Consensus       165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~  242 (271)
T TIGR02740       165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQ  242 (271)
T ss_pred             cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCE
Confidence            57899999999999999999999999999985  555566655421        0124889999999999888864 544


Q ss_pred             E-EEEeCC-ChHHHHHHHHHHhC
Q 018973          323 R-GRYVGS-GKGELIGEILRYQG  343 (348)
Q Consensus       323 v-~~~~G~-~~~~L~~~l~~~~~  343 (348)
                      + ....|. +.++|.+.+.....
T Consensus       243 v~~v~~G~~s~~eL~~~i~~~a~  265 (271)
T TIGR02740       243 FTPIGFGVMSADELVDRILLAAH  265 (271)
T ss_pred             EEEEEeCCCCHHHHHHHHHHHhc
Confidence            4 445687 99999998887643

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=99.20  E-value=3.8e-10  Score=92.03  Aligned_cols=100  Identities=15%  Similarity=0.123  Sum_probs=81.7

Q ss_pred             hhHHHHhhhcccCCcEEEEEEeCC--CChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchhHHHHHHhCCCCccceEEE
Q 018973          240 EDVEKLIDDHKVDQKLIVLDVGLK--HCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDSCMQFLRDMNVVEVPTFLF  316 (348)
Q Consensus       240 ~~~~~~l~~~~~~~k~vvV~F~a~--wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~  316 (348)
                      .+++.++..    ....+|+|-.+  -++.+.-..-.|.+++++|.+ +++|++||++++++   ++.+|||.++||+++
T Consensus        25 ~~~~~~~~~----~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~---LA~~fgV~siPTLl~   97 (132)
T PRK11509         25 SRLDDWLTQ----APDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEA---IGDRFGVFRFPATLV   97 (132)
T ss_pred             ccHHHHHhC----CCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHH---HHHHcCCccCCEEEE
Confidence            556677754    34455555442  345566666789999999974 59999999999998   999999999999999


Q ss_pred             EeCCeEEEEEeCC-ChHHHHHHHHHHhCCCC
Q 018973          317 IRDGQIRGRYVGS-GKGELIGEILRYQGVRV  346 (348)
Q Consensus       317 ~~~G~~v~~~~G~-~~~~L~~~l~~~~~~~~  346 (348)
                      |++|+.++++.|. +.+++.++|+++++...
T Consensus        98 FkdGk~v~~i~G~~~k~~l~~~I~~~L~~~~  128 (132)
T PRK11509         98 FTGGNYRGVLNGIHPWAELINLMRGLVEPQQ  128 (132)
T ss_pred             EECCEEEEEEeCcCCHHHHHHHHHHHhcCcC
Confidence            9999999999999 99999999999987643

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=99.20  E-value=1.4e-10  Score=89.72  Aligned_cols=70  Identities=26%  Similarity=0.505  Sum_probs=55.6

Q ss_pred             CcEEEEEEeCCCChhhhhhhhHHHHHHHHhC--CcEEEEEEECCCch-h---------------------HHHHHHhCCC
Q 018973          253 QKLIVLDVGLKHCGPCVKVYPTVIKLSRQMA--GTVVFARMNGDEND-S---------------------CMQFLRDMNV  308 (348)
Q Consensus       253 ~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~--~~v~~~~vd~~~~~-~---------------------~~~l~~~~~V  308 (348)
                      +|+++|+||++||++|+...|.|.++.++++  +++.++.|+.++.. +                     ...+.+.|+|
T Consensus         1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i   80 (95)
T PF13905_consen    1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI   80 (95)
T ss_dssp             TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence            5899999999999999999999999999998  67999999987542 1                     2346777999


Q ss_pred             CccceEEEE-eCCeE
Q 018973          309 VEVPTFLFI-RDGQI  322 (348)
Q Consensus       309 ~~~PTl~~~-~~G~~  322 (348)
                      .++|+++++ ++|++
T Consensus        81 ~~iP~~~lld~~G~I   95 (95)
T PF13905_consen   81 NGIPTLVLLDPDGKI   95 (95)
T ss_dssp             TSSSEEEEEETTSBE
T ss_pred             CcCCEEEEECCCCCC
Confidence            999987666 67864

...

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=99.16  E-value=4.3e-10  Score=96.69  Aligned_cols=91  Identities=23%  Similarity=0.323  Sum_probs=75.5

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCc-EEEEEEECCCchh-------------------HHHHHHhCCCCcc
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGT-VVFARMNGDENDS-------------------CMQFLRDMNVVEV  311 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~~~~~~-------------------~~~l~~~~~V~~~  311 (348)
                      .+++++|+||++||++|+...+.+.++.+++++. +.++.++.+..++                   ..++++.|++..+
T Consensus        60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  139 (173)
T PRK03147         60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL  139 (173)
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence            3689999999999999999999999999998653 8888888765431                   2357889999999


Q ss_pred             ceEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHh
Q 018973          312 PTFLFI-RDGQIRGRYVGS-GKGELIGEILRYQ  342 (348)
Q Consensus       312 PTl~~~-~~G~~v~~~~G~-~~~~L~~~l~~~~  342 (348)
                      |+++++ ++|+++..+.|. +.+++.+++++..
T Consensus       140 P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~~  172 (173)
T PRK03147        140 PTTFLIDKDGKVVKVITGEMTEEQLEEYLEKIK  172 (173)
T ss_pred             CeEEEECCCCcEEEEEeCCCCHHHHHHHHHHhc
Confidence            976555 699999998998 8899999888653

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=99.16  E-value=7.4e-11  Score=103.01  Aligned_cols=75  Identities=13%  Similarity=0.065  Sum_probs=59.6

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchh-H-------------------HHHHHHcCcCCCC
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEK-T-------------------KELCEREKIKKVP  197 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~-~-------------------~~l~~~~~V~~~P  197 (348)
                      ++++++|+|||+||++|+...|.|.++.++  ++.++.|+.++..+ .                   ..+++.|||.++|
T Consensus        67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P  144 (185)
T PRK15412         67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAP  144 (185)
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCC
Confidence            589999999999999999999999999763  68889998765321 1                   2355678999999


Q ss_pred             e-EEEeeccccccccccC
Q 018973          198 H-FSFYKSMEKIHEEEGI  214 (348)
Q Consensus       198 t-~~~~~~g~~v~~~~G~  214 (348)
                      + +++.++|+.+..+.|.
T Consensus       145 ~t~vid~~G~i~~~~~G~  162 (185)
T PRK15412        145 ETFLIDGNGIIRYRHAGD  162 (185)
T ss_pred             eEEEECCCceEEEEEecC
Confidence            6 5555789988888774

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=99.16  E-value=2e-10  Score=94.35  Aligned_cols=74  Identities=16%  Similarity=0.407  Sum_probs=59.8

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC---cEEEEEEECCCchh---------------------HHHHHHhCC
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG---TVVFARMNGDENDS---------------------CMQFLRDMN  307 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~---~v~~~~vd~~~~~~---------------------~~~l~~~~~  307 (348)
                      .+++++|+||++||++|+.+.|.+.++.+++.+   ++.++.++.+...+                     ...++++|+
T Consensus        17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (131)
T cd03009          17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK   96 (131)
T ss_pred             CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence            478999999999999999999999999888753   47777777765421                     135788999


Q ss_pred             CCccceEEEE-eCCeEEEE
Q 018973          308 VVEVPTFLFI-RDGQIRGR  325 (348)
Q Consensus       308 V~~~PTl~~~-~~G~~v~~  325 (348)
                      |.++||++++ ++|+++.+
T Consensus        97 v~~~P~~~lid~~G~i~~~  115 (131)
T cd03009          97 IEGIPTLIILDADGEVVTT  115 (131)
T ss_pred             CCCCCEEEEECCCCCEEcc
Confidence            9999988777 58988765

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=99.15  E-value=2.2e-10  Score=94.42  Aligned_cols=74  Identities=16%  Similarity=0.377  Sum_probs=59.6

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC---cEEEEEEECCCchh----------------------HHHHHHhC
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG---TVVFARMNGDENDS----------------------CMQFLRDM  306 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~---~v~~~~vd~~~~~~----------------------~~~l~~~~  306 (348)
                      .+++++|+||++||++|+.+.|.+.++.+++++   ++.++.|+.+..++                      ...+.+.|
T Consensus        16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   95 (132)
T cd02964          16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF   95 (132)
T ss_pred             CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence            579999999999999999999999999888764   47777777765421                      13467789


Q ss_pred             CCCccceEEEE-eCCeEEEE
Q 018973          307 NVVEVPTFLFI-RDGQIRGR  325 (348)
Q Consensus       307 ~V~~~PTl~~~-~~G~~v~~  325 (348)
                      +|.++||++++ ++|+++.+
T Consensus        96 ~v~~iPt~~lid~~G~iv~~  115 (132)
T cd02964          96 KVEGIPTLVVLKPDGDVVTT  115 (132)
T ss_pred             CCCCCCEEEEECCCCCEEch
Confidence            99999988777 58988765

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=99.14  E-value=7.9e-11  Score=93.87  Aligned_cols=79  Identities=23%  Similarity=0.252  Sum_probs=60.3

Q ss_pred             cCCCEEEEEEeCCCCHHHHhhhhHHHHH---HHHcC-CcEEEEEeCCCch-----------------hHHHHHHHcCcCC
Q 018973          137 AKNKLVVVEFAASRSLDSSKIYPFMVDL---SRQCN-DVEFILVMGDESE-----------------KTKELCEREKIKK  195 (348)
Q Consensus       137 ~~~k~vvV~F~a~wC~~C~~~~p~l~~l---a~~~~-~v~f~~vd~d~~~-----------------~~~~l~~~~~V~~  195 (348)
                      .++++++++|+++||+.|+.+.+.+.+.   ...+. ++.++.+++++..                 ...+++++|||.+
T Consensus         3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g   82 (112)
T PF13098_consen    3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG   82 (112)
T ss_dssp             TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred             CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence            3689999999999999999999999864   34443 4888999987643                 2357999999999


Q ss_pred             CCeEEEee-ccccccccccCC
Q 018973          196 VPHFSFYK-SMEKIHEEEGIG  215 (348)
Q Consensus       196 ~Pt~~~~~-~g~~v~~~~G~~  215 (348)
                      +||++++. +|+.+..+.|..
T Consensus        83 tPt~~~~d~~G~~v~~~~G~~  103 (112)
T PF13098_consen   83 TPTIVFLDKDGKIVYRIPGYL  103 (112)
T ss_dssp             SSEEEECTTTSCEEEEEESS-
T ss_pred             cCEEEEEcCCCCEEEEecCCC
Confidence            99999995 799898888854

...

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=99.14  E-value=4e-10  Score=96.98  Aligned_cols=87  Identities=16%  Similarity=0.138  Sum_probs=68.6

Q ss_pred             EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch----------hHHHHHHhCCC--Cccce-EEEEeCCeEE
Q 018973          257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND----------SCMQFLRDMNV--VEVPT-FLFIRDGQIR  323 (348)
Q Consensus       257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~----------~~~~l~~~~~V--~~~PT-l~~~~~G~~v  323 (348)
                      +|+||++||++|+++.|.+++++++++  +.++.|+.++..          .-..+.+.|++  .++|| |++.++|+++
T Consensus        73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~  150 (181)
T PRK13728         73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEA  150 (181)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEE
Confidence            778999999999999999999999984  666666665431          11236778995  69995 5666899986


Q ss_pred             -EEEeCC-ChHHHHHHHHHHhCCC
Q 018973          324 -GRYVGS-GKGELIGEILRYQGVR  345 (348)
Q Consensus       324 -~~~~G~-~~~~L~~~l~~~~~~~  345 (348)
                       ..+.|. +.++|.+.|++.+..+
T Consensus       151 ~~~~~G~~~~~~L~~~I~~ll~~~  174 (181)
T PRK13728        151 LPLLQGATDAAGFMARMDTVLQMY  174 (181)
T ss_pred             EEEEECCCCHHHHHHHHHHHHhhh
Confidence             578999 9999999999887654

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=99.14  E-value=1e-10  Score=116.12  Aligned_cols=83  Identities=16%  Similarity=0.122  Sum_probs=66.0

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCC-------------------------chhHHHHHHH
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDE-------------------------SEKTKELCER  190 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~-------------------------~~~~~~l~~~  190 (348)
                      ++++|||+|||+||++|+.+.|.|++++++++  ++.|+.|..+.                         .+...++++.
T Consensus        55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~  134 (521)
T PRK14018         55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQS  134 (521)
T ss_pred             CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHHH
Confidence            68999999999999999999999999999986  57777765310                         0123568899


Q ss_pred             cCcCCCCeEE-EeeccccccccccCC-CCccc
Q 018973          191 EKIKKVPHFS-FYKSMEKIHEEEGIG-PDQLM  220 (348)
Q Consensus       191 ~~V~~~Pt~~-~~~~g~~v~~~~G~~-~~~l~  220 (348)
                      |+|+++||++ +.++|+.+..+.|.. .+++.
T Consensus       135 fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~  166 (521)
T PRK14018        135 LNISVYPSWAIIGKDGDVQRIVKGSISEAQAL  166 (521)
T ss_pred             cCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHH
Confidence            9999999975 557999999999954 34444

>PTZ00056 glutathione peroxidase; Provisional

Probab=99.13  E-value=4.3e-10  Score=99.25  Aligned_cols=92  Identities=14%  Similarity=0.222  Sum_probs=73.6

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECC--------CchhHHHHHHhCCC--------------
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGD--------ENDSCMQFLRDMNV--------------  308 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~--------~~~~~~~l~~~~~V--------------  308 (348)
                      .+++++|.||++||++|+...|.|.++.+++++ .+.++.|+++        ..++.+++++++++              
T Consensus        38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~~  117 (199)
T PTZ00056         38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGEN  117 (199)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCCc
Confidence            478999999999999999999999999999965 3889999863        22356667777653              


Q ss_pred             ----------------------Cccc----eEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973          309 ----------------------VEVP----TFLFIRDGQIRGRYVGS-GKGELIGEILRYQG  343 (348)
Q Consensus       309 ----------------------~~~P----Tl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~  343 (348)
                                            ..+|    |+++.++|+++.++.|. +.++|.+.|+++++
T Consensus       118 ~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~  179 (199)
T PTZ00056        118 THELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLG  179 (199)
T ss_pred             cCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence                                  1122    67777999999999998 88889888888764

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=99.13  E-value=2.2e-10  Score=90.40  Aligned_cols=76  Identities=22%  Similarity=0.260  Sum_probs=63.6

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHc--CCcEEEEEeCCCc--h------------------hHHHHHHHcCcCC
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQC--NDVEFILVMGDES--E------------------KTKELCEREKIKK  195 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~--~~v~f~~vd~d~~--~------------------~~~~l~~~~~V~~  195 (348)
                      .+++++|+||++||++|+...+.+.++.+++  +++.++.|+.|..  +                  ...++++.|++..
T Consensus        18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (116)
T cd02966          18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG   97 (116)
T ss_pred             CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence            4799999999999999999999999999998  5699999999873  1                  1156888999999


Q ss_pred             CCeEEEe-ecccccccccc
Q 018973          196 VPHFSFY-KSMEKIHEEEG  213 (348)
Q Consensus       196 ~Pt~~~~-~~g~~v~~~~G  213 (348)
                      +|+++++ ++|+.+.++.|
T Consensus        98 ~P~~~l~d~~g~v~~~~~g  116 (116)
T cd02966          98 LPTTFLIDRDGRIRARHVG  116 (116)
T ss_pred             cceEEEECCCCcEEEEecC
Confidence            9998777 47877776654

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=99.13  E-value=1.7e-10  Score=97.34  Aligned_cols=74  Identities=16%  Similarity=0.111  Sum_probs=53.6

Q ss_pred             CCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCch---------hHHHHH-HHc---CcCCCCeEEEee-c
Q 018973          139 NKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESE---------KTKELC-ERE---KIKKVPHFSFYK-S  204 (348)
Q Consensus       139 ~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~---------~~~~l~-~~~---~V~~~Pt~~~~~-~  204 (348)
                      ++..+|+|||+||+||++..|.|++++++|+ +.++.|+.|+..         ...+.. ..|   +|.++||.+++. +
T Consensus        50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~-~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~  128 (153)
T TIGR02738        50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFG-LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNVN  128 (153)
T ss_pred             CCCEEEEEECCCChhHHHHHHHHHHHHHHcC-CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeCC
Confidence            5667999999999999999999999999984 666667766421         012233 345   899999977774 5


Q ss_pred             ccc-cccccc
Q 018973          205 MEK-IHEEEG  213 (348)
Q Consensus       205 g~~-v~~~~G  213 (348)
                      |.. +....|
T Consensus       129 G~~i~~~~~G  138 (153)
T TIGR02738       129 TRKAYPVLQG  138 (153)
T ss_pred             CCEEEEEeec
Confidence            554 444555

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=99.12  E-value=2.3e-10  Score=93.41  Aligned_cols=76  Identities=17%  Similarity=0.242  Sum_probs=60.6

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCCC------c------------------hhHHHHHHHc
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGDE------S------------------EKTKELCERE  191 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d~------~------------------~~~~~l~~~~  191 (348)
                      +++++||+||++||++|+...|.|+++.++|.+  +.++.|+.++      .                  +...++++.|
T Consensus        22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~  101 (126)
T cd03012          22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY  101 (126)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence            679999999999999999999999999999974  7888886521      1                  1123567778


Q ss_pred             CcCCCCeEEEe-ecccccccccc
Q 018973          192 KIKKVPHFSFY-KSMEKIHEEEG  213 (348)
Q Consensus       192 ~V~~~Pt~~~~-~~g~~v~~~~G  213 (348)
                      ++..+|+.+++ ++|+.+..+.|
T Consensus       102 ~v~~~P~~~vid~~G~v~~~~~G  124 (126)
T cd03012         102 GNQYWPALYLIDPTGNVRHVHFG  124 (126)
T ss_pred             CCCcCCeEEEECCCCcEEEEEec
Confidence            88999987777 57888877766

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=99.12  E-value=7.2e-10  Score=84.93  Aligned_cols=76  Identities=13%  Similarity=0.276  Sum_probs=65.2

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCC-C
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS-G  330 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~-~  330 (348)
                      .+..-+..|+++||++|....+.+.+++..++ ++.+..+|.++.++   ++++|+|.++||+++  +|+.+.  .|. +
T Consensus        11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~-~i~~~~vd~~~~~e---~a~~~~V~~vPt~vi--dG~~~~--~G~~~   82 (89)
T cd03026          11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNP-NIEHEMIDGALFQD---EVEERGIMSVPAIFL--NGELFG--FGRMT   82 (89)
T ss_pred             CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC-CceEEEEEhHhCHH---HHHHcCCccCCEEEE--CCEEEE--eCCCC
Confidence            46677889999999999999999999998874 59999999999887   999999999999975  888766  476 6


Q ss_pred             hHHHH
Q 018973          331 KGELI  335 (348)
Q Consensus       331 ~~~L~  335 (348)
                      .+++.
T Consensus        83 ~~e~~   87 (89)
T cd03026          83 LEEIL   87 (89)
T ss_pred             HHHHh
Confidence            66654

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=99.12  E-value=3.9e-10  Score=81.41  Aligned_cols=62  Identities=11%  Similarity=0.240  Sum_probs=54.0

Q ss_pred             EEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEE
Q 018973          256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIR  323 (348)
Q Consensus       256 vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v  323 (348)
                      -++.|+++||++|+.+.+.+++++... +++.+..+|++++++   +++++++.++||+++  +|+.+
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~-~~i~~~~id~~~~~~---l~~~~~i~~vPti~i--~~~~~   63 (67)
T cd02973           2 NIEVFVSPTCPYCPDAVQAANRIAALN-PNISAEMIDAAEFPD---LADEYGVMSVPAIVI--NGKVE   63 (67)
T ss_pred             EEEEEECCCCCCcHHHHHHHHHHHHhC-CceEEEEEEcccCHh---HHHHcCCcccCEEEE--CCEEE
Confidence            367899999999999999999998775 469999999998877   999999999999876  66644

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.10  E-value=4.9e-10  Score=121.06  Aligned_cols=92  Identities=20%  Similarity=0.358  Sum_probs=75.6

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCc-EEEEEEEC---CCch---------------------hHHHHHHhC
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGT-VVFARMNG---DEND---------------------SCMQFLRDM  306 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~---~~~~---------------------~~~~l~~~~  306 (348)
                      .+++++|+||++||++|+.+.|.|+++.++++++ +.++.|..   ++..                     ...++.++|
T Consensus       419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~  498 (1057)
T PLN02919        419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL  498 (1057)
T ss_pred             CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence            5899999999999999999999999999999754 77777742   2111                     112367789


Q ss_pred             CCCccceEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973          307 NVVEVPTFLFI-RDGQIRGRYVGS-GKGELIGEILRYQG  343 (348)
Q Consensus       307 ~V~~~PTl~~~-~~G~~v~~~~G~-~~~~L~~~l~~~~~  343 (348)
                      +|.++||++++ ++|+++.++.|. ..++|.++|++.+.
T Consensus       499 ~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~  537 (1057)
T PLN02919        499 GVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ  537 (1057)
T ss_pred             CCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence            99999998888 799999999999 88999999888753

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=99.09  E-value=2.1e-10  Score=92.98  Aligned_cols=74  Identities=15%  Similarity=0.121  Sum_probs=57.2

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCc--------------------hhHHHHHHHcCcCCCC
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDES--------------------EKTKELCEREKIKKVP  197 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~--------------------~~~~~l~~~~~V~~~P  197 (348)
                      ++++++|+||++||++|+.+.|.|.++++++   .++.|..+..                    +...++++.|+|.++|
T Consensus        19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~---~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P   95 (123)
T cd03011          19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADY---PVVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTP   95 (123)
T ss_pred             CCCEEEEEEECCcChhhhhhChHHHHHHhhC---CEEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCccc
Confidence            5799999999999999999999999998874   3333333221                    1134699999999999


Q ss_pred             eEEEeeccccccccccC
Q 018973          198 HFSFYKSMEKIHEEEGI  214 (348)
Q Consensus       198 t~~~~~~g~~v~~~~G~  214 (348)
                      +++++.+|+.+....|.
T Consensus        96 ~~~vid~~gi~~~~~g~  112 (123)
T cd03011          96 AIVIVDPGGIVFVTTGV  112 (123)
T ss_pred             EEEEEcCCCeEEEEecc
Confidence            99999766677777773

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=99.09  E-value=4.9e-10  Score=110.45  Aligned_cols=93  Identities=18%  Similarity=0.270  Sum_probs=76.9

Q ss_pred             CCCCc-eEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHH---HHHHHcCCcEEEEEeCCC-chhHHHHHHHc
Q 018973          117 RDERV-KKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMV---DLSRQCNDVEFILVMGDE-SEKTKELCERE  191 (348)
Q Consensus       117 ~~~~v-~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~---~la~~~~~v~f~~vd~d~-~~~~~~l~~~~  191 (348)
                      .+... ..+.+.+++++++.++++|+|+|||||+||-.||.+++..-   +...+..|++.+++|.++ +++..++.++|
T Consensus       451 ~~~~~~q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~  530 (569)
T COG4232         451 SHGEFWQPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRL  530 (569)
T ss_pred             ccchhhhccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHc
Confidence            33344 67766779999999888889999999999999999998763   445567889999999665 56788999999


Q ss_pred             CcCCCCeEEEee-cccccc
Q 018973          192 KIKKVPHFSFYK-SMEKIH  209 (348)
Q Consensus       192 ~V~~~Pt~~~~~-~g~~v~  209 (348)
                      |+-++|++++|. +|++..
T Consensus       531 ~~~G~P~~~ff~~~g~e~~  549 (569)
T COG4232         531 GVFGVPTYLFFGPQGSEPE  549 (569)
T ss_pred             CCCCCCEEEEECCCCCcCc
Confidence            999999999997 665554

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=99.07  E-value=2.8e-10  Score=98.30  Aligned_cols=74  Identities=15%  Similarity=0.152  Sum_probs=57.9

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCch--------------------hHHHHHHHcCcCCCC
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESE--------------------KTKELCEREKIKKVP  197 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~--------------------~~~~l~~~~~V~~~P  197 (348)
                      ++++++|+||++||++|+.+.|.++++.++  ++.++.|+.++..                    ...++.+.|++.++|
T Consensus        62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~P  139 (173)
T TIGR00385        62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD--GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGAP  139 (173)
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHc--CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeCC
Confidence            589999999999999999999999999864  5788888865321                    112456778889999


Q ss_pred             e-EEEeecccccccccc
Q 018973          198 H-FSFYKSMEKIHEEEG  213 (348)
Q Consensus       198 t-~~~~~~g~~v~~~~G  213 (348)
                      + +++.++|+.+..+.|
T Consensus       140 ~~~~id~~G~i~~~~~G  156 (173)
T TIGR00385       140 ETFLVDGNGVILYRHAG  156 (173)
T ss_pred             eEEEEcCCceEEEEEec
Confidence            5 555578988887777

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=99.07  E-value=1.3e-09  Score=98.23  Aligned_cols=92  Identities=15%  Similarity=0.209  Sum_probs=72.1

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCc-EEEEEEECC--------CchhHHHHH-HhCCC-------------
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGT-VVFARMNGD--------ENDSCMQFL-RDMNV-------------  308 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~~--------~~~~~~~l~-~~~~V-------------  308 (348)
                      .+++++|+||++||++|+...|.|.++.++++++ +.++.|+++        ..++..+++ +++++             
T Consensus        98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~  177 (236)
T PLN02399         98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGP  177 (236)
T ss_pred             CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcc
Confidence            3689999999999999999999999999999654 888888864        223445554 33321             


Q ss_pred             ---------------------Cccc-eEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973          309 ---------------------VEVP-TFLFIRDGQIRGRYVGS-GKGELIGEILRYQG  343 (348)
Q Consensus       309 ---------------------~~~P-Tl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~  343 (348)
                                           ...| |+++.++|+++.++.|. ++++|.+.|++++.
T Consensus       178 ~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~  235 (236)
T PLN02399        178 STAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA  235 (236)
T ss_pred             hhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence                                 1247 56777999999999999 89999999998874

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=99.07  E-value=8e-10  Score=89.51  Aligned_cols=84  Identities=19%  Similarity=0.192  Sum_probs=62.8

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCc------------------hhHHHHHHhCCCCccce
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN------------------DSCMQFLRDMNVVEVPT  313 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~------------------~~~~~l~~~~~V~~~PT  313 (348)
                      .+++++|+||++||++|+.+.|.+.++.+++.  +..+.+|-+..                  +...+++++|+|.++|+
T Consensus        19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~   96 (123)
T cd03011          19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADYP--VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTPA   96 (123)
T ss_pred             CCCEEEEEEECCcChhhhhhChHHHHHHhhCC--EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcccE
Confidence            46899999999999999999999999987742  33333332100                  01124888999999999


Q ss_pred             EEEEeCCeEEEEEeCC-ChHHHHHH
Q 018973          314 FLFIRDGQIRGRYVGS-GKGELIGE  337 (348)
Q Consensus       314 l~~~~~G~~v~~~~G~-~~~~L~~~  337 (348)
                      ++++.+|+++.++.|. ++++|.+.
T Consensus        97 ~~vid~~gi~~~~~g~~~~~~~~~~  121 (123)
T cd03011          97 IVIVDPGGIVFVTTGVTSEWGLRLR  121 (123)
T ss_pred             EEEEcCCCeEEEEeccCCHHHHHhh
Confidence            8888644488899998 88888764

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=2.8e-10  Score=98.32  Aligned_cols=97  Identities=19%  Similarity=0.287  Sum_probs=85.7

Q ss_pred             CCCCCCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCCCchhHHHHHHHc
Q 018973          114 NAPRDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGDESEKTKELCERE  191 (348)
Q Consensus       114 ~~~~~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d~~~~~~~l~~~~  191 (348)
                      .-.++++++-..+.+.+++.+...+.+.++|.|||.|.+.|+...|.+.+|..+|..  .+|.+||+..   .++.+++|
T Consensus       119 ~y~gpe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGr---fpd~a~kf  195 (265)
T KOG0914|consen  119 AYSGPETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGR---FPDVAAKF  195 (265)
T ss_pred             ccCCchheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeecc---CcChHHhe
Confidence            345677888888889999999988889999999999999999999999999999965  9999999998   55589999


Q ss_pred             CcC------CCCeEEEeecccccccccc
Q 018973          192 KIK------KVPHFSFYKSMEKIHEEEG  213 (348)
Q Consensus       192 ~V~------~~Pt~~~~~~g~~v~~~~G  213 (348)
                      +|.      .+||+++|++|+++.+.-.
T Consensus       196 ris~s~~srQLPT~ilFq~gkE~~RrP~  223 (265)
T KOG0914|consen  196 RISLSPGSRQLPTYILFQKGKEVSRRPD  223 (265)
T ss_pred             eeccCcccccCCeEEEEccchhhhcCcc
Confidence            985      7899999999999986643

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=99.05  E-value=6.9e-10  Score=109.43  Aligned_cols=106  Identities=18%  Similarity=0.334  Sum_probs=87.3

Q ss_pred             eecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHH---HHHHHHhCCcEEEEEEECCCch-hHHHHHHhCCCC
Q 018973          234 VQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTV---IKLSRQMAGTVVFARMNGDEND-SCMQFLRDMNVV  309 (348)
Q Consensus       234 ~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~~~~~-~~~~l~~~~~V~  309 (348)
                      ..+.+..++++.++++  .+|+|+|+|||+||-.|+.+++..   .+...+.+ ++...++|.++++ +..++.++||+-
T Consensus       457 q~~s~~~~L~~~la~~--~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~-~~vlLqaDvT~~~p~~~~lLk~~~~~  533 (569)
T COG4232         457 QPISPLAELDQALAEA--KAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ-DVVLLQADVTANDPAITALLKRLGVF  533 (569)
T ss_pred             hccCCHHHHHHHHHhC--CCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC-CeEEEEeeecCCCHHHHHHHHHcCCC
Confidence            4455556899999876  457999999999999999998865   34444444 4999999998765 678899999999


Q ss_pred             ccceEEEEe-CCeEEEEEeCC-ChHHHHHHHHHHh
Q 018973          310 EVPTFLFIR-DGQIRGRYVGS-GKGELIGEILRYQ  342 (348)
Q Consensus       310 ~~PTl~~~~-~G~~v~~~~G~-~~~~L~~~l~~~~  342 (348)
                      ++|++++|. +|++.....|. +.+.+.+++++..
T Consensus       534 G~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~~  568 (569)
T COG4232         534 GVPTYLFFGPQGSEPEILTGFLTADAFLEHLERAA  568 (569)
T ss_pred             CCCEEEEECCCCCcCcCCcceecHHHHHHHHHHhc
Confidence            999999996 88877778899 9999999998764

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=99.05  E-value=1e-09  Score=87.61  Aligned_cols=73  Identities=16%  Similarity=0.247  Sum_probs=53.4

Q ss_pred             CcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHH-----------------HHHHhCCCCccceEE
Q 018973          253 QKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCM-----------------QFLRDMNVVEVPTFL  315 (348)
Q Consensus       253 ~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~-----------------~l~~~~~V~~~PTl~  315 (348)
                      +++++|+||++||++|+.+.|.++++.+.+.+++.++.+..+..++..                 ++.++|++..+|+.+
T Consensus        21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~~  100 (114)
T cd02967          21 GRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYAV  100 (114)
T ss_pred             CCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeEE
Confidence            789999999999999999999999998888666766665322222222                 244557778889755


Q ss_pred             EE-eCCeEEEE
Q 018973          316 FI-RDGQIRGR  325 (348)
Q Consensus       316 ~~-~~G~~v~~  325 (348)
                      ++ ++|+++.+
T Consensus       101 vid~~G~v~~~  111 (114)
T cd02967         101 LLDEAGVIAAK  111 (114)
T ss_pred             EECCCCeEEec
Confidence            55 68887654

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=99.04  E-value=6.8e-10  Score=88.67  Aligned_cols=62  Identities=13%  Similarity=0.298  Sum_probs=50.1

Q ss_pred             CCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCeEE
Q 018973          139 NKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPHFS  200 (348)
Q Consensus       139 ~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~  200 (348)
                      +++++|+||++||++|+...|.++++++++.+ +.++.+..++.++..++++++++..+|++.
T Consensus        21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~   83 (114)
T cd02967          21 GRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVL   83 (114)
T ss_pred             CCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEe
Confidence            79999999999999999999999999988754 666666433344566788888888888764

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=99.02  E-value=1.4e-09  Score=93.53  Aligned_cols=77  Identities=25%  Similarity=0.307  Sum_probs=63.9

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCCCch-------------------hHHHHHHHcCcCCC
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGDESE-------------------KTKELCEREKIKKV  196 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d~~~-------------------~~~~l~~~~~V~~~  196 (348)
                      ++++++|+||++||++|+...+.+.++.+++++  +.++.|++|+.+                   ...++++.|+|..+
T Consensus        60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  139 (173)
T PRK03147         60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL  139 (173)
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence            579999999999999999999999999999864  889999987542                   23578899999999


Q ss_pred             CeEEEe-eccccccccccC
Q 018973          197 PHFSFY-KSMEKIHEEEGI  214 (348)
Q Consensus       197 Pt~~~~-~~g~~v~~~~G~  214 (348)
                      |+++++ ++|+.+..+.|.
T Consensus       140 P~~~lid~~g~i~~~~~g~  158 (173)
T PRK03147        140 PTTFLIDKDGKVVKVITGE  158 (173)
T ss_pred             CeEEEECCCCcEEEEEeCC
Confidence            987666 578777766663

>smart00594 UAS UAS domain

Probab=99.01  E-value=3.2e-09  Score=86.31  Aligned_cols=97  Identities=11%  Similarity=0.141  Sum_probs=75.6

Q ss_pred             hHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHH---HHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEE
Q 018973          241 DVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTV---IKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFI  317 (348)
Q Consensus       241 ~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~  317 (348)
                      .+++.+..+...+|.++|+|+++||++|+.+...+   .++.+.+..++.+..+|++..+. .+++++|++.++|+++++
T Consensus        15 s~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg-~~l~~~~~~~~~P~~~~l   93 (122)
T smart00594       15 SLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEG-QRVSQFYKLDSFPYVAIV   93 (122)
T ss_pred             CHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhH-HHHHHhcCcCCCCEEEEE
Confidence            45555555555689999999999999999987653   44555555568888899886653 579999999999998887


Q ss_pred             -eCC-----eEEEEEeCC-ChHHHHHHH
Q 018973          318 -RDG-----QIRGRYVGS-GKGELIGEI  338 (348)
Q Consensus       318 -~~G-----~~v~~~~G~-~~~~L~~~l  338 (348)
                       .+|     +.+.++.|. +.++|...|
T Consensus        94 ~~~~g~~~~~~~~~~~G~~~~~~l~~~l  121 (122)
T smart00594       94 DPRTGQRVIEWVGVVEGEISPEELMTFL  121 (122)
T ss_pred             ecCCCceeEEEeccccCCCCHHHHHHhh
Confidence             455     467888999 889988776

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=99.01  E-value=2.3e-09  Score=84.40  Aligned_cols=77  Identities=27%  Similarity=0.512  Sum_probs=64.2

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhC-CcEEEEEEECCCc-h-hH------------------HHHHHhCCCCc
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMA-GTVVFARMNGDEN-D-SC------------------MQFLRDMNVVE  310 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~~-~-~~------------------~~l~~~~~V~~  310 (348)
                      .+++++|+||++||+.|+...+.+.++.+++. .++.++.|+.+.. . ..                  .++.+.|++.+
T Consensus        18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (116)
T cd02966          18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG   97 (116)
T ss_pred             CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence            36899999999999999999999999999985 4599999999874 1 11                  23788899999


Q ss_pred             cceEEEE-eCCeEEEEEeC
Q 018973          311 VPTFLFI-RDGQIRGRYVG  328 (348)
Q Consensus       311 ~PTl~~~-~~G~~v~~~~G  328 (348)
                      +|+++++ ++|+++.++.|
T Consensus        98 ~P~~~l~d~~g~v~~~~~g  116 (116)
T cd02966          98 LPTTFLIDRDGRIRARHVG  116 (116)
T ss_pred             cceEEEECCCCcEEEEecC
Confidence            9987666 68999988776

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=99.01  E-value=2.8e-09  Score=89.03  Aligned_cols=78  Identities=24%  Similarity=0.439  Sum_probs=63.8

Q ss_pred             CCcEEEEEEeCC-CChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchhHHH------------------HHHhCCCC--
Q 018973          252 DQKLIVLDVGLK-HCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDSCMQ------------------FLRDMNVV--  309 (348)
Q Consensus       252 ~~k~vvV~F~a~-wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~~~~------------------l~~~~~V~--  309 (348)
                      .+++++|+||++ ||++|+...|.+.++.+.+++ .+.++.|..+..+...+                  +.++|++.  
T Consensus        27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~  106 (146)
T PF08534_consen   27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM  106 (146)
T ss_dssp             TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred             CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence            589999999999 999999999999999888654 38888888776554333                  55567888  


Q ss_pred             -------ccceE-EEEeCCeEEEEEeCC
Q 018973          310 -------EVPTF-LFIRDGQIRGRYVGS  329 (348)
Q Consensus       310 -------~~PTl-~~~~~G~~v~~~~G~  329 (348)
                             .+|++ ++.++|+++....|.
T Consensus       107 ~~~~~~~~~P~~~lId~~G~V~~~~~g~  134 (146)
T PF08534_consen  107 EDPGNGFGIPTTFLIDKDGKVVYRHVGP  134 (146)
T ss_dssp             CCTTTTSSSSEEEEEETTSBEEEEEESS
T ss_pred             cccccCCeecEEEEEECCCEEEEEEeCC
Confidence                   99965 666899999999998

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=99.01  E-value=2.3e-09  Score=87.49  Aligned_cols=78  Identities=19%  Similarity=0.308  Sum_probs=61.3

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCC------chhHH------------------HHHHhC
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDE------NDSCM------------------QFLRDM  306 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~------~~~~~------------------~l~~~~  306 (348)
                      .+++++|+||++||++|....|.|+++.+++++ ++.++.|+.++      .+..+                  .+.+.|
T Consensus        22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~  101 (126)
T cd03012          22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY  101 (126)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence            468999999999999999999999999999974 48888886521      11222                  255568


Q ss_pred             CCCccceEEEE-eCCeEEEEEeCC
Q 018973          307 NVVEVPTFLFI-RDGQIRGRYVGS  329 (348)
Q Consensus       307 ~V~~~PTl~~~-~~G~~v~~~~G~  329 (348)
                      ++.++|+.+++ ++|+++.++.|.
T Consensus       102 ~v~~~P~~~vid~~G~v~~~~~G~  125 (126)
T cd03012         102 GNQYWPALYLIDPTGNVRHVHFGE  125 (126)
T ss_pred             CCCcCCeEEEECCCCcEEEEEecC
Confidence            88999976666 799999998875

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.00  E-value=8.1e-10  Score=119.40  Aligned_cols=77  Identities=18%  Similarity=0.270  Sum_probs=64.0

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeC---CC--c-------------------hhHHHHHHHc
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMG---DE--S-------------------EKTKELCERE  191 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~---d~--~-------------------~~~~~l~~~~  191 (348)
                      ++++|||+|||+||++|+...|.|++++++|++  +.++.|..   |+  .                   +...++.++|
T Consensus       419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~  498 (1057)
T PLN02919        419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL  498 (1057)
T ss_pred             CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence            689999999999999999999999999999975  77777742   22  0                   1134577899


Q ss_pred             CcCCCCeEEEe-eccccccccccC
Q 018973          192 KIKKVPHFSFY-KSMEKIHEEEGI  214 (348)
Q Consensus       192 ~V~~~Pt~~~~-~~g~~v~~~~G~  214 (348)
                      +|.++||++++ ++|+.+.++.|.
T Consensus       499 ~V~~iPt~ilid~~G~iv~~~~G~  522 (1057)
T PLN02919        499 GVSSWPTFAVVSPNGKLIAQLSGE  522 (1057)
T ss_pred             CCCccceEEEECCCCeEEEEEecc
Confidence            99999999988 699999888884

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=99.00  E-value=1e-09  Score=89.48  Aligned_cols=88  Identities=14%  Similarity=0.191  Sum_probs=62.4

Q ss_pred             ChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHH---HHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceE
Q 018973          238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTV---IKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTF  314 (348)
Q Consensus       238 s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl  314 (348)
                      ...++++.++.+...+|+++|+|+++||++|+.+...+   .++.+....++..+.++.+..+.   -....+ .++||+
T Consensus         8 W~~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~---~~~~~g-~~vPti   83 (130)
T cd02960           8 WVQTYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDK---NLSPDG-QYVPRI   83 (130)
T ss_pred             chhhHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCC---CcCccC-cccCeE
Confidence            33467777777777899999999999999999998765   44455454456666777653321   011234 679999


Q ss_pred             EEE-eCCeEEEEEeCC
Q 018973          315 LFI-RDGQIRGRYVGS  329 (348)
Q Consensus       315 ~~~-~~G~~v~~~~G~  329 (348)
                      +|+ .+|+++.++.|.
T Consensus        84 vFld~~g~vi~~i~Gy   99 (130)
T cd02960          84 MFVDPSLTVRADITGR   99 (130)
T ss_pred             EEECCCCCCccccccc
Confidence            888 689888887774

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=98.99  E-value=1.7e-08  Score=87.38  Aligned_cols=167  Identities=17%  Similarity=0.281  Sum_probs=122.5

Q ss_pred             hhhHHHHHHHHcC-CcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeecc-ccccccccC--CCCcccccccccCCCccc
Q 018973          157 IYPFMVDLSRQCN-DVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSM-EKIHEEEGI--GPDQLMGDVLYYGDSHSA  232 (348)
Q Consensus       157 ~~p~l~~la~~~~-~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g-~~v~~~~G~--~~~~l~~~v~~~~~~~~~  232 (348)
                      ....+.++|+.+. ++.|+.+.      ..++++++++.. |++++|+.+ +....+.|.  +.+.|...+.....  +.
T Consensus         8 ~~~~f~~~A~~~~~~~~F~~~~------~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~--P~   78 (184)
T PF13848_consen    8 LFEIFEEAAEKLKGDYQFGVTF------NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSF--PL   78 (184)
T ss_dssp             HHHHHHHHHHHHTTTSEEEEEE-------HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSS--TS
T ss_pred             HHHHHHHHHHhCcCCcEEEEEc------HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhcc--cc
Confidence            4567888999987 49999997      234899999999 999999984 334556664  44455443333222  22


Q ss_pred             eeecCChhhHHHHhhhcccCCc-EEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCC--
Q 018973          233 VVQLHSKEDVEKLIDDHKVDQK-LIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVV--  309 (348)
Q Consensus       233 v~~~~s~~~~~~~l~~~~~~~k-~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~--  309 (348)
                      +..+ +.+.+..+...    +. ++++.|..........+...+..+++++++++.|+.+|++..++   +++.||+.  
T Consensus        79 v~~~-t~~n~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~---~~~~~~i~~~  150 (184)
T PF13848_consen   79 VPEL-TPENFEKLFSS----PKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPR---LLKYFGIDED  150 (184)
T ss_dssp             CEEE-STTHHHHHHST----SSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHH---HHHHTTTTTS
T ss_pred             cccc-chhhHHHHhcC----CCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHH---HHHHcCCCCc
Confidence            3333 56678777764    44 47888877777788888889999999999999999999997776   99999998  


Q ss_pred             ccceEEEEe--CCeEEEEEeCC-ChHHHHHHHHH
Q 018973          310 EVPTFLFIR--DGQIRGRYVGS-GKGELIGEILR  340 (348)
Q Consensus       310 ~~PTl~~~~--~G~~v~~~~G~-~~~~L~~~l~~  340 (348)
                      .+|+++++.  +++......|. +.+.|.+|++.
T Consensus       151 ~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d  184 (184)
T PF13848_consen  151 DLPALVIFDSNKGKYYYLPEGEITPESIEKFLND  184 (184)
T ss_dssp             SSSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred             cCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence            899999886  45533334677 99999999864

...

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=98.99  E-value=5.4e-09  Score=88.34  Aligned_cols=90  Identities=19%  Similarity=0.237  Sum_probs=71.7

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC-cEEEEEEEC--------CCchhHHHHHHh-CCC-------------
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNG--------DENDSCMQFLRD-MNV-------------  308 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~--------~~~~~~~~l~~~-~~V-------------  308 (348)
                      .+++++|.||++||++|+...|.+.++.+++++ .+.++.|++        +..+..++++++ +++             
T Consensus        21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~~  100 (153)
T TIGR02540        21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGS  100 (153)
T ss_pred             CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCCC
Confidence            478899999999999999999999999999964 588998885        222345556653 322             


Q ss_pred             -------------Cccc-----eEEEEeCCeEEEEEeCC-ChHHHHHHHHHH
Q 018973          309 -------------VEVP-----TFLFIRDGQIRGRYVGS-GKGELIGEILRY  341 (348)
Q Consensus       309 -------------~~~P-----Tl~~~~~G~~v~~~~G~-~~~~L~~~l~~~  341 (348)
                                   ..+|     |+++.++|+++.++.|. +.++|...|+++
T Consensus       101 ~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l  152 (153)
T TIGR02540       101 EAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITAL  152 (153)
T ss_pred             CCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHh
Confidence                         1367     68888999999999999 889999888765

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=98.98  E-value=1.6e-09  Score=81.69  Aligned_cols=71  Identities=21%  Similarity=0.304  Sum_probs=50.5

Q ss_pred             HHHHHHHhc--CCCEEEEEEeCCCCHHHHhhhhHH---HHHHH-HcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEe
Q 018973          129 EFDEALRLA--KNKLVVVEFAASRSLDSSKIYPFM---VDLSR-QCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFY  202 (348)
Q Consensus       129 ~f~~~l~~~--~~k~vvV~F~a~wC~~C~~~~p~l---~~la~-~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~  202 (348)
                      ++++.+..+  .+|+++|+|+|+||++|+.+...+   .++.+ -..++.+++||.++.+...    .+..+++|+++|+
T Consensus         5 d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~----~~~~~~~P~~~~l   80 (82)
T PF13899_consen    5 DYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNA----QFDRQGYPTFFFL   80 (82)
T ss_dssp             SHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHH----HHHHCSSSEEEEE
T ss_pred             hHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhH----HhCCccCCEEEEe
Confidence            455555544  499999999999999999998766   34444 2256899999998744322    2222679999987


Q ss_pred             e
Q 018973          203 K  203 (348)
Q Consensus       203 ~  203 (348)
                      .
T Consensus        81 d   81 (82)
T PF13899_consen   81 D   81 (82)
T ss_dssp             E
T ss_pred             C
Confidence            4

...

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=98.97  E-value=1.3e-09  Score=91.09  Aligned_cols=80  Identities=24%  Similarity=0.299  Sum_probs=64.6

Q ss_pred             cCCCEEEEEEeCC-CCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchh------------------HHHHHHHcCcC-
Q 018973          137 AKNKLVVVEFAAS-RSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEK------------------TKELCEREKIK-  194 (348)
Q Consensus       137 ~~~k~vvV~F~a~-wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~------------------~~~l~~~~~V~-  194 (348)
                      .+++++||+||++ ||++|+...|.+.+++++|.  ++.++.|..+..+.                  ...+.++|++. 
T Consensus        26 ~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~  105 (146)
T PF08534_consen   26 FKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTI  105 (146)
T ss_dssp             GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEE
T ss_pred             hCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCcc
Confidence            3799999999999 99999999999999998864  48888888775431                  23677788988 


Q ss_pred             --------CCCeE-EEeeccccccccccCCC
Q 018973          195 --------KVPHF-SFYKSMEKIHEEEGIGP  216 (348)
Q Consensus       195 --------~~Pt~-~~~~~g~~v~~~~G~~~  216 (348)
                              .+|++ ++-++|+.+....|...
T Consensus       106 ~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~  136 (146)
T PF08534_consen  106 MEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP  136 (146)
T ss_dssp             ECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred             ccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence                    99985 45578999888887655

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=98.95  E-value=1.7e-09  Score=88.16  Aligned_cols=82  Identities=20%  Similarity=0.272  Sum_probs=56.7

Q ss_pred             HHHHHHHHhc--CCCEEEEEEeCCCCHHHHhhhhHH------HHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeE
Q 018973          128 EEFDEALRLA--KNKLVVVEFAASRSLDSSKIYPFM------VDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHF  199 (348)
Q Consensus       128 ~~f~~~l~~~--~~k~vvV~F~a~wC~~C~~~~p~l------~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~  199 (348)
                      .+|++.++.+  .+|+|+|+|+++||++|+.+....      .++.++  ++..+.++.|..+..  +. ..+ .++||+
T Consensus        10 ~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~--~Fv~V~l~~d~td~~--~~-~~g-~~vPti   83 (130)
T cd02960          10 QTYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE--DFIMLNLVHETTDKN--LS-PDG-QYVPRI   83 (130)
T ss_pred             hhHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh--CeEEEEEEeccCCCC--cC-ccC-cccCeE
Confidence            3666665544  489999999999999999998654      333322  456667776643211  11 234 689999


Q ss_pred             EEe-eccccccccccCC
Q 018973          200 SFY-KSMEKIHEEEGIG  215 (348)
Q Consensus       200 ~~~-~~g~~v~~~~G~~  215 (348)
                      +|+ .+|+.+.++.|..
T Consensus        84 vFld~~g~vi~~i~Gy~  100 (130)
T cd02960          84 MFVDPSLTVRADITGRY  100 (130)
T ss_pred             EEECCCCCCcccccccc
Confidence            999 5788888888854

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>PTZ00056 glutathione peroxidase; Provisional

Probab=98.94  E-value=3.1e-09  Score=93.86  Aligned_cols=60  Identities=22%  Similarity=0.263  Sum_probs=49.2

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCC--------CchhHHHHHHHcCcCCCCe
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGD--------ESEKTKELCEREKIKKVPH  198 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d--------~~~~~~~l~~~~~V~~~Pt  198 (348)
                      ++++|||.|||+||++|+...|.|.++.++|.+  +.++.|+++        ..++.+++++++++. +|.
T Consensus        38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~-fpv  107 (199)
T PTZ00056         38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIK-YNF  107 (199)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCC-cee
Confidence            689999999999999999999999999999864  899999864        234567778888763 443

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=98.93  E-value=5.5e-09  Score=88.20  Aligned_cols=85  Identities=22%  Similarity=0.378  Sum_probs=65.7

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCC--------chhHHHHHHh-CCC-------------
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDE--------NDSCMQFLRD-MNV-------------  308 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~--------~~~~~~l~~~-~~V-------------  308 (348)
                      .+++++|+||++||+ |....|.|.++.+++++ .+.++.|+.+.        .+..++++++ +++             
T Consensus        21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~d~d~~~~   99 (152)
T cd00340          21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKIDVNGE   99 (152)
T ss_pred             CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeeeeEeccCC
Confidence            478999999999999 99999999999999964 48888887642        2345566654 331             


Q ss_pred             ----------Cccc------------eEEEEeCCeEEEEEeCC-ChHHHHHH
Q 018973          309 ----------VEVP------------TFLFIRDGQIRGRYVGS-GKGELIGE  337 (348)
Q Consensus       309 ----------~~~P------------Tl~~~~~G~~v~~~~G~-~~~~L~~~  337 (348)
                                ..+|            |+++.++|+++.++.|. +.++|.+.
T Consensus       100 ~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~  151 (152)
T cd00340         100 NAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD  151 (152)
T ss_pred             CCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence                      2356            56666999999999999 88877653

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=98.93  E-value=6.7e-09  Score=90.99  Aligned_cols=88  Identities=18%  Similarity=0.292  Sum_probs=62.1

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchh-----------------HHHHHHhCCCCccce-
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDS-----------------CMQFLRDMNVVEVPT-  313 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~-----------------~~~l~~~~~V~~~PT-  313 (348)
                      .+++++|+||++||++|+++.|.+.++.++.+.++.  .++.+..++                 ..++.+.|++..+|+ 
T Consensus        73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv--~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~  150 (189)
T TIGR02661        73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEETDVV--MISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYG  150 (189)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHhcCCcEE--EEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceE
Confidence            478999999999999999999999999877543344  443221111                 224677889999996 


Q ss_pred             EEEEeCCeEEEEEeCCChHHHHHHHHHH
Q 018973          314 FLFIRDGQIRGRYVGSGKGELIGEILRY  341 (348)
Q Consensus       314 l~~~~~G~~v~~~~G~~~~~L~~~l~~~  341 (348)
                      +++.++|+++.+......+.+.+.++..
T Consensus       151 ~lID~~G~I~~~g~~~~~~~le~ll~~l  178 (189)
T TIGR02661       151 VLLDQDGKIRAKGLTNTREHLESLLEAD  178 (189)
T ss_pred             EEECCCCeEEEccCCCCHHHHHHHHHHH
Confidence            5556899988763222566777777654

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=98.92  E-value=4.2e-09  Score=94.94  Aligned_cols=63  Identities=19%  Similarity=0.209  Sum_probs=48.7

Q ss_pred             HhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCC--------CchhHHHHH-HHcCcCCCCe
Q 018973          135 RLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGD--------ESEKTKELC-EREKIKKVPH  198 (348)
Q Consensus       135 ~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d--------~~~~~~~l~-~~~~V~~~Pt  198 (348)
                      .+.++++|||.|||+||++|+...|.|.+++++|.+  +.++.|+++        +.++..+.+ +++++. +|.
T Consensus        95 sd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~-fPv  168 (236)
T PLN02399         95 SKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAE-FPI  168 (236)
T ss_pred             HHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCC-Ccc
Confidence            333689999999999999999999999999999964  899999874        223445554 466664 553

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=98.92  E-value=2.1e-09  Score=98.56  Aligned_cols=95  Identities=23%  Similarity=0.282  Sum_probs=75.4

Q ss_pred             CCCCCceEecCHHHHHHHHHhcC-CCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcC
Q 018973          116 PRDERVKKVHSIEEFDEALRLAK-NKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIK  194 (348)
Q Consensus       116 ~~~~~v~~v~s~~~f~~~l~~~~-~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~  194 (348)
                      ..-+.|.+|.+.++|-+.+.... +..|||+||-+.++.|+.+...|..||.+|+.++|++|....++    +..+|.+.
T Consensus       122 ~~fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~----~~~~f~~~  197 (265)
T PF02114_consen  122 PRFGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCP----ASENFPDK  197 (265)
T ss_dssp             ----SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC----TTTTS-TT
T ss_pred             CcCceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccC----cccCCccc
Confidence            34678999988999999886543 67899999999999999999999999999999999999988743    56789999


Q ss_pred             CCCeEEEeeccccccccccC
Q 018973          195 KVPHFSFYKSMEKIHEEEGI  214 (348)
Q Consensus       195 ~~Pt~~~~~~g~~v~~~~G~  214 (348)
                      .+||+++|++|+.++.++|.
T Consensus       198 ~LPtllvYk~G~l~~~~V~l  217 (265)
T PF02114_consen  198 NLPTLLVYKNGDLIGNFVGL  217 (265)
T ss_dssp             C-SEEEEEETTEEEEEECTG
T ss_pred             CCCEEEEEECCEEEEeEEeh
Confidence            99999999999999988874

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=98.91  E-value=6.4e-09  Score=90.02  Aligned_cols=83  Identities=7%  Similarity=0.002  Sum_probs=63.3

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEE------EEEECCCch-hHH------------------------
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVF------ARMNGDEND-SCM------------------------  300 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~------~~vd~~~~~-~~~------------------------  300 (348)
                      .+|+++|+|||.||++|+...|.+.++...   ++.+      ..||.++.. ...                        
T Consensus        58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~---~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~  134 (184)
T TIGR01626        58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAA---KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDK  134 (184)
T ss_pred             CCCEEEEEEEecCCChhhccchHHHHHHHc---CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCc
Confidence            489999999999999999999999999654   2444      566665421 111                        


Q ss_pred             -HHHHhCCCCccc-e-EEEEeCCeEEEEEeCC-ChHHHHHH
Q 018973          301 -QFLRDMNVVEVP-T-FLFIRDGQIRGRYVGS-GKGELIGE  337 (348)
Q Consensus       301 -~l~~~~~V~~~P-T-l~~~~~G~~v~~~~G~-~~~~L~~~  337 (348)
                       .+...|++.++| | +++.++|+++.++.|. +.+++.+.
T Consensus       135 g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~  175 (184)
T TIGR01626       135 GAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTV  175 (184)
T ss_pred             chHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHH
Confidence             144568899997 6 5777999999999999 87777653

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.90  E-value=6.4e-08  Score=97.71  Aligned_cols=186  Identities=15%  Similarity=0.184  Sum_probs=127.6

Q ss_pred             HHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeeccc
Q 018973          127 IEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSME  206 (348)
Q Consensus       127 ~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~  206 (348)
                      .+++.+.+.+.++. |-+.++.+.|+.|..+...++++++.-+.+.+...+.+              ...|+|.+.++|+
T Consensus         7 ~~~l~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~~~--------------~~~p~~~~~~~~~   71 (517)
T PRK15317          7 KTQLKQYLELLERP-IELVASLDDSEKSAELKELLEEIASLSDKITVEEDSLD--------------VRKPSFSITRPGE   71 (517)
T ss_pred             HHHHHHHHHhCCCC-EEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEccCC--------------CCCCEEEEEcCCc
Confidence            45667777754444 54555555899999999999999998776665332211              2479999887665


Q ss_pred             cc-cccccCC----CCcccccccccCCCccceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHH
Q 018973          207 KI-HEEEGIG----PDQLMGDVLYYGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQ  281 (348)
Q Consensus       207 ~v-~~~~G~~----~~~l~~~v~~~~~~~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~  281 (348)
                      .. -+|.|..    ...+...+...+.....+     .++..+.++.-  ++..-+..|.++.|++|......+.+++..
T Consensus        72 ~~~i~f~g~P~g~Ef~s~i~~i~~~~~~~~~l-----~~~~~~~i~~~--~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~  144 (517)
T PRK15317         72 DTGVRFAGIPMGHEFTSLVLALLQVGGHPPKL-----DQEVIEQIKAL--DGDFHFETYVSLSCHNCPDVVQALNLMAVL  144 (517)
T ss_pred             cceEEEEecCccHHHHHHHHHHHHhcCCCCCC-----CHHHHHHHHhc--CCCeEEEEEEcCCCCCcHHHHHHHHHHHHh
Confidence            43 2344422    122333333323332222     23344444433  355668899999999999999999999987


Q ss_pred             hCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCC-ChHHHHHHHHHHh
Q 018973          282 MAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS-GKGELIGEILRYQ  342 (348)
Q Consensus       282 ~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~  342 (348)
                      .+ ++.+-.+|..++++   ++++|++.++|++++  +|+.+  +.|. +.++|.+.+.+..
T Consensus       145 ~~-~i~~~~id~~~~~~---~~~~~~v~~VP~~~i--~~~~~--~~g~~~~~~~~~~~~~~~  198 (517)
T PRK15317        145 NP-NITHTMIDGALFQD---EVEARNIMAVPTVFL--NGEEF--GQGRMTLEEILAKLDTGA  198 (517)
T ss_pred             CC-CceEEEEEchhCHh---HHHhcCCcccCEEEE--CCcEE--EecCCCHHHHHHHHhccc
Confidence            64 69999999999998   999999999999876  66543  5688 8888888887643

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=98.89  E-value=6.2e-09  Score=83.51  Aligned_cols=85  Identities=19%  Similarity=0.237  Sum_probs=64.2

Q ss_pred             HHHHHHHhc--CCCEEEEEEeCCCCHHHHhhhhHH---HHHHHHcC-CcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEe
Q 018973          129 EFDEALRLA--KNKLVVVEFAASRSLDSSKIYPFM---VDLSRQCN-DVEFILVMGDESEKTKELCEREKIKKVPHFSFY  202 (348)
Q Consensus       129 ~f~~~l~~~--~~k~vvV~F~a~wC~~C~~~~p~l---~~la~~~~-~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~  202 (348)
                      +|+++++.+  ++|+++|+|+++||++|+.+....   +++.+... +..++++|+++. +..+++..|++.++|+++++
T Consensus         5 s~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~-e~~~~~~~~~~~~~P~~~~i   83 (114)
T cd02958           5 SFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSS-EGQRFLQSYKVDKYPHIAII   83 (114)
T ss_pred             CHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCc-cHHHHHHHhCccCCCeEEEE
Confidence            455555544  489999999999999999987532   22333332 478888998763 36789999999999999988


Q ss_pred             e--ccccccccccC
Q 018973          203 K--SMEKIHEEEGI  214 (348)
Q Consensus       203 ~--~g~~v~~~~G~  214 (348)
                      .  +|+.+.++.|.
T Consensus        84 ~~~~g~~l~~~~G~   97 (114)
T cd02958          84 DPRTGEVLKVWSGN   97 (114)
T ss_pred             eCccCcEeEEEcCC
Confidence            5  58888877774

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=98.88  E-value=6.5e-09  Score=89.53  Aligned_cols=71  Identities=13%  Similarity=0.039  Sum_probs=55.1

Q ss_pred             EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCc----------hhHHHHHHHcCc--CCCCeEEEe-eccccc-
Q 018973          143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDES----------EKTKELCEREKI--KKVPHFSFY-KSMEKI-  208 (348)
Q Consensus       143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~----------~~~~~l~~~~~V--~~~Pt~~~~-~~g~~v-  208 (348)
                      +|.||++||++|++..|.|.+++++|+ +.++.|+.|+.          +....+.+.|++  .++||.+++ ++|+.+ 
T Consensus        73 lV~FwaswCp~C~~e~P~L~~l~~~~g-~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~  151 (181)
T PRK13728         73 VVLFMQGHCPYCHQFDPVLKQLAQQYG-FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL  151 (181)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHHHHcC-CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence            677999999999999999999999994 77777877753          122447778995  699996655 688875 


Q ss_pred             cccccC
Q 018973          209 HEEEGI  214 (348)
Q Consensus       209 ~~~~G~  214 (348)
                      ..+.|.
T Consensus       152 ~~~~G~  157 (181)
T PRK13728        152 PLLQGA  157 (181)
T ss_pred             EEEECC
Confidence            456663

>PLN02412 probable glutathione peroxidase

Probab=98.87  E-value=1.4e-08  Score=87.09  Aligned_cols=92  Identities=16%  Similarity=0.230  Sum_probs=70.4

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCc-EEEEEEECCC--------chhHHH-HHHhCC--------------
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGT-VVFARMNGDE--------NDSCMQ-FLRDMN--------------  307 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~~~--------~~~~~~-l~~~~~--------------  307 (348)
                      .+++++|+||++||++|+...|.|.++.++++++ +.++.|+.+.        .++... ++++++              
T Consensus        28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g~  107 (167)
T PLN02412         28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNGK  107 (167)
T ss_pred             CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCCC
Confidence            3689999999999999999999999999999754 8889888642        112222 233321              


Q ss_pred             --------------------CCccce-EEEEeCCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973          308 --------------------VVEVPT-FLFIRDGQIRGRYVGS-GKGELIGEILRYQG  343 (348)
Q Consensus       308 --------------------V~~~PT-l~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~  343 (348)
                                          |...|+ +++.++|+++.++.|. +.++|...|+++++
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~  165 (167)
T PLN02412        108 NTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLG  165 (167)
T ss_pred             CCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence                                233475 6666899999999999 99999999998865

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=98.87  E-value=6.3e-09  Score=87.86  Aligned_cols=60  Identities=22%  Similarity=0.314  Sum_probs=47.0

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCC--------chhHHHHHHH-cCcCCCCeE
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDE--------SEKTKELCER-EKIKKVPHF  199 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~--------~~~~~~l~~~-~~V~~~Pt~  199 (348)
                      ++++|||.|||+||+ |+...|.|.+++++|.  ++.++.|+++.        .++.++++++ +++. +|.+
T Consensus        21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~-fp~~   91 (152)
T cd00340          21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVT-FPMF   91 (152)
T ss_pred             CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCC-ceee
Confidence            689999999999999 9999999999999996  48888887642        2345666765 6653 5544

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.84  E-value=1.7e-07  Score=94.59  Aligned_cols=186  Identities=14%  Similarity=0.209  Sum_probs=127.9

Q ss_pred             HHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeeccc
Q 018973          127 IEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSME  206 (348)
Q Consensus       127 ~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~  206 (348)
                      .+++.+.+.+.++...++.|.. .|..|..+...++++++..+.+.+...+.++             ...|++.+.++|+
T Consensus         7 ~~~l~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~s~ki~~~~~~~~~-------------~~~p~~~~~~~~~   72 (515)
T TIGR03140         7 LAQLKSYLASLENPVTLVLSAG-SHEKSKELLELLDEIASLSDKISLTQNTADT-------------LRKPSFTILRDGA   72 (515)
T ss_pred             HHHHHHHHHhcCCCEEEEEEeC-CCchhHHHHHHHHHHHHhCCCeEEEEecCCc-------------CCCCeEEEecCCc
Confidence            4667777776445555555554 7999999999999999987767665444322             3469998887765


Q ss_pred             cc-cccccCC----CCcccccccccCCCccceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHH
Q 018973          207 KI-HEEEGIG----PDQLMGDVLYYGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQ  281 (348)
Q Consensus       207 ~v-~~~~G~~----~~~l~~~v~~~~~~~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~  281 (348)
                      .. -+|.|..    ...+...+...+.....+    + ++..+.++.-  ++..-+..|.++.|++|......+.+++..
T Consensus        73 ~~~i~f~g~P~g~Ef~s~i~~i~~~~~~~~~l----~-~~~~~~~~~~--~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~  145 (515)
T TIGR03140        73 DTGIRFAGIPGGHEFTSLVLAILQVGGHGPKL----D-EGIIDRIRRL--NGPLHFETYVSLTCQNCPDVVQALNQMALL  145 (515)
T ss_pred             ccceEEEecCCcHHHHHHHHHHHHhcCCCCCC----C-HHHHHHHHhc--CCCeEEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence            32 3344422    122333333333322222    2 3333344432  355668899999999999999999999988


Q ss_pred             hCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCC-ChHHHHHHHHHH
Q 018973          282 MAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS-GKGELIGEILRY  341 (348)
Q Consensus       282 ~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~~  341 (348)
                      .+ ++..-.+|..++++   ++++|++.++|++++  +|+.+  +.|. +.+++.+.+.+.
T Consensus       146 ~p-~i~~~~id~~~~~~---~~~~~~v~~VP~~~i--~~~~~--~~g~~~~~~~~~~l~~~  198 (515)
T TIGR03140       146 NP-NISHTMIDGALFQD---EVEALGIQGVPAVFL--NGEEF--HNGRMDLAELLEKLEET  198 (515)
T ss_pred             CC-CceEEEEEchhCHH---HHHhcCCcccCEEEE--CCcEE--EecCCCHHHHHHHHhhc
Confidence            75 68888999999998   999999999999876  66543  5687 888887777655

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=98.82  E-value=9.7e-09  Score=77.36  Aligned_cols=74  Identities=28%  Similarity=0.552  Sum_probs=54.3

Q ss_pred             hHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHH---HHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEE
Q 018973          241 DVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTV---IKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFI  317 (348)
Q Consensus       241 ~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~  317 (348)
                      ++++.+..+...+++++|+|+++||++|+.+...+   .++.+.+.+++.++.+|.++.+....+..    .++|+++++
T Consensus         5 d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~----~~~P~~~~l   80 (82)
T PF13899_consen    5 DYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR----QGYPTFFFL   80 (82)
T ss_dssp             SHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH----CSSSEEEEE
T ss_pred             hHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC----ccCCEEEEe
Confidence            45566666556799999999999999999998766   45555344568999999987664221222    569999887


Q ss_pred             e
Q 018973          318 R  318 (348)
Q Consensus       318 ~  318 (348)
                      .
T Consensus        81 d   81 (82)
T PF13899_consen   81 D   81 (82)
T ss_dssp             E
T ss_pred             C
Confidence            4

...

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=98.81  E-value=1.4e-08  Score=79.50  Aligned_cols=72  Identities=22%  Similarity=0.366  Sum_probs=63.3

Q ss_pred             CCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCC-CchhHHHHHHHcC--cCCCCeEEEeecccccccccc
Q 018973          139 NKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGD-ESEKTKELCEREK--IKKVPHFSFYKSMEKIHEEEG  213 (348)
Q Consensus       139 ~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d-~~~~~~~l~~~~~--V~~~Pt~~~~~~g~~v~~~~G  213 (348)
                      +++++++||++||++|+.+.|.+.++++++.+ +.++.+|.. .   .+++...|+  +..+|++.++.+|+.+....+
T Consensus        32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  107 (127)
T COG0526          32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDE---NPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVG  107 (127)
T ss_pred             CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCC---ChHHHHHHhhhhccCCeEEEEeCcchhhhhhh
Confidence            78999999999999999999999999999985 999999986 5   456888999  999999998888877655554

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=98.81  E-value=1.4e-08  Score=82.85  Aligned_cols=83  Identities=14%  Similarity=0.131  Sum_probs=66.7

Q ss_pred             HHHHHHHHhcCCCEEEEEEeCC--CCHHHHhhhhHHHHHHHHcC-C-cEEEEEeCCCchhHHHHHHHcCcCCCCeEEEee
Q 018973          128 EEFDEALRLAKNKLVVVEFAAS--RSLDSSKIYPFMVDLSRQCN-D-VEFILVMGDESEKTKELCEREKIKKVPHFSFYK  203 (348)
Q Consensus       128 ~~f~~~l~~~~~k~vvV~F~a~--wC~~C~~~~p~l~~la~~~~-~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~  203 (348)
                      .++++.+.  .....+|.|-.+  .++.+--+.-.|++++++|+ + ++|++||+|+   .++++.+|||+++||+++|+
T Consensus        25 ~~~~~~~~--~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~---~~~LA~~fgV~siPTLl~Fk   99 (132)
T PRK11509         25 SRLDDWLT--QAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQ---SEAIGDRFGVFRFPATLVFT   99 (132)
T ss_pred             ccHHHHHh--CCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCC---CHHHHHHcCCccCCEEEEEE
Confidence            55555555  344455555432  47778888999999999998 3 8999999999   56699999999999999999


Q ss_pred             ccccccccccCC
Q 018973          204 SMEKIHEEEGIG  215 (348)
Q Consensus       204 ~g~~v~~~~G~~  215 (348)
                      +|+.+.+..|..
T Consensus       100 dGk~v~~i~G~~  111 (132)
T PRK11509        100 GGNYRGVLNGIH  111 (132)
T ss_pred             CCEEEEEEeCcC
Confidence            999999998854

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=98.80  E-value=1.4e-08  Score=88.97  Aligned_cols=71  Identities=11%  Similarity=0.238  Sum_probs=51.5

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchh-----------------HHHHHHHcCcCCCCeEE
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEK-----------------TKELCEREKIKKVPHFS  200 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~-----------------~~~l~~~~~V~~~Pt~~  200 (348)
                      ++++++|+||++||++|+...|.+.++.+++ ++.++.|..++.++                 ..++++.|+|..+|+.+
T Consensus        73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~-~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~  151 (189)
T TIGR02661        73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAE-ETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGV  151 (189)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEE
Confidence            6899999999999999999999999998775 34444444332111                 23567788888888755


Q ss_pred             E-eecccccc
Q 018973          201 F-YKSMEKIH  209 (348)
Q Consensus       201 ~-~~~g~~v~  209 (348)
                      + .++|+...
T Consensus       152 lID~~G~I~~  161 (189)
T TIGR02661       152 LLDQDGKIRA  161 (189)
T ss_pred             EECCCCeEEE
Confidence            4 45676654

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=8.9e-09  Score=89.09  Aligned_cols=87  Identities=13%  Similarity=0.269  Sum_probs=73.8

Q ss_pred             cCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhC-CcEEEEEEECCCchhHHHHHHhCCC------
Q 018973          236 LHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMA-GTVVFARMNGDENDSCMQFLRDMNV------  308 (348)
Q Consensus       236 ~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~~~~~~~l~~~~~V------  308 (348)
                      ....+.+++.+...  ..+.++|.|++.|.+.|+...|.+.+++.+|. +.++|++||+...++   .+++|+|      
T Consensus       129 f~~~q~~deel~rn--k~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd---~a~kfris~s~~s  203 (265)
T KOG0914|consen  129 FTNMQLEDEELDRN--KRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPD---VAAKFRISLSPGS  203 (265)
T ss_pred             ecchhhHHHHhccC--CceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcC---hHHheeeccCccc
Confidence            44455566666544  57899999999999999999999999999996 459999999999998   8999988      


Q ss_pred             CccceEEEEeCCeEEEEEe
Q 018973          309 VEVPTFLFIRDGQIRGRYV  327 (348)
Q Consensus       309 ~~~PTl~~~~~G~~v~~~~  327 (348)
                      +++||+++|++|+++.|.-
T Consensus       204 rQLPT~ilFq~gkE~~RrP  222 (265)
T KOG0914|consen  204 RQLPTYILFQKGKEVSRRP  222 (265)
T ss_pred             ccCCeEEEEccchhhhcCc
Confidence            4799999999999887653

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=98.77  E-value=1.8e-08  Score=85.13  Aligned_cols=63  Identities=19%  Similarity=0.251  Sum_probs=49.3

Q ss_pred             hcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeC--------CCchhHHHHHHH-cCcCCCCeE
Q 018973          136 LAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN--DVEFILVMG--------DESEKTKELCER-EKIKKVPHF  199 (348)
Q Consensus       136 ~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~--------d~~~~~~~l~~~-~~V~~~Pt~  199 (348)
                      +.++|+|||.|||+||++|+...|.|.++.++|+  ++.++.|++        |..+...+.+++ +++. +|.+
T Consensus        19 ~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~-fp~~   92 (153)
T TIGR02540        19 KYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVT-FPMF   92 (153)
T ss_pred             HhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCC-CCcc
Confidence            3368999999999999999999999999999986  489999985        323345666764 6764 5644

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=98.74  E-value=4.9e-08  Score=89.54  Aligned_cols=105  Identities=18%  Similarity=0.322  Sum_probs=79.2

Q ss_pred             cceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCc
Q 018973          231 SAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVE  310 (348)
Q Consensus       231 ~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~  310 (348)
                      ..+..+.+.++|-+.+... ..+..|||+||.+.++.|..+...|..|+.+|+ .++|++|..+..+    +..+|.+..
T Consensus       125 G~v~ei~~~e~~l~~ie~~-~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp-~vKFvkI~a~~~~----~~~~f~~~~  198 (265)
T PF02114_consen  125 GEVYEIDSGEEFLDAIEKE-SKSTWVVVHIYEPGFPRCEIMNSCLECLARKYP-EVKFVKIRASKCP----ASENFPDKN  198 (265)
T ss_dssp             -SEEE--SHHHHHHHCCTS-STT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-T-TSEEEEEEECGCC----TTTTS-TTC
T ss_pred             ceEEEccChhhHHHHHhcc-CCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCC-ceEEEEEehhccC----cccCCcccC
Confidence            3466676777777777543 245689999999999999999999999999996 4999999987654    567899999


Q ss_pred             cceEEEEeCCeEEEEEeCC--------ChHHHHHHHHHH
Q 018973          311 VPTFLFIRDGQIRGRYVGS--------GKGELIGEILRY  341 (348)
Q Consensus       311 ~PTl~~~~~G~~v~~~~G~--------~~~~L~~~l~~~  341 (348)
                      +||+++|++|..++.++|.        +..+|..+|.++
T Consensus       199 LPtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~  237 (265)
T PF02114_consen  199 LPTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY  237 (265)
T ss_dssp             -SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred             CCEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence            9999999999999999874        355777777654

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>PTZ00256 glutathione peroxidase; Provisional

Probab=98.73  E-value=1.1e-07  Score=82.88  Aligned_cols=91  Identities=15%  Similarity=0.302  Sum_probs=68.0

Q ss_pred             CcE-EEEEEeCCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCC--------chhHHHHHH-hC---------------
Q 018973          253 QKL-IVLDVGLKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDE--------NDSCMQFLR-DM---------------  306 (348)
Q Consensus       253 ~k~-vvV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~--------~~~~~~l~~-~~---------------  306 (348)
                      +++ +++.+|++||++|+...|.|.++.+++++ .+.++.|+++.        .++..++.+ ++               
T Consensus        40 Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~d~d~~g~  119 (183)
T PTZ00256         40 GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKIEVNGE  119 (183)
T ss_pred             CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCceEEecCCC
Confidence            564 45566999999999999999999999964 38888887531        122333322 21               


Q ss_pred             ---------------------CCCccce----EEEEeCCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973          307 ---------------------NVVEVPT----FLFIRDGQIRGRYVGS-GKGELIGEILRYQG  343 (348)
Q Consensus       307 ---------------------~V~~~PT----l~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~  343 (348)
                                           ++.++|+    +++.++|+++.++.|. +.+++.+.|++++.
T Consensus       120 ~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ll~  182 (183)
T PTZ00256        120 NTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKLLN  182 (183)
T ss_pred             CCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHHhc
Confidence                                 2346793    7888999999999999 88889999988764

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=98.72  E-value=8e-08  Score=69.88  Aligned_cols=71  Identities=18%  Similarity=0.277  Sum_probs=56.0

Q ss_pred             EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchh-HHHHHHhCCCCccceEEEEeCCeEEEEEeCCChHHHH
Q 018973          257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDS-CMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELI  335 (348)
Q Consensus       257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~-~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~~~~~L~  335 (348)
                      +..|+++||++|+.+.+.|.+      .++.+..+|+++++. .+++.+.+++.++|++++.  |+.   +.|.+.++|.
T Consensus         2 i~lf~~~~C~~C~~~~~~l~~------~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g~~~~~i~   70 (74)
T TIGR02196         2 VKVYTTPWCPPCKKAKEYLTS------KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVGFDPEKLD   70 (74)
T ss_pred             EEEEcCCCChhHHHHHHHHHH------CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---EeeCCHHHHH
Confidence            568999999999999877765      247888999987653 3457788999999999874  654   5677888888


Q ss_pred             HHH
Q 018973          336 GEI  338 (348)
Q Consensus       336 ~~l  338 (348)
                      ++|
T Consensus        71 ~~i   73 (74)
T TIGR02196        71 QLL   73 (74)
T ss_pred             HHh
Confidence            776

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=98.71  E-value=2.6e-08  Score=86.27  Aligned_cols=75  Identities=12%  Similarity=0.106  Sum_probs=57.2

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEE------EEEeCCCch--------------------------hHH
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEF------ILVMGDESE--------------------------KTK  185 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f------~~vd~d~~~--------------------------~~~  185 (348)
                      .+|+++|.|||+||++|+...|.+++|.++  ++.+      +.||.|+..                          ...
T Consensus        58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~--~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g  135 (184)
T TIGR01626        58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAA--KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKG  135 (184)
T ss_pred             CCCEEEEEEEecCCChhhccchHHHHHHHc--CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcc
Confidence            699999999999999999999999999654  2444      667766521                          112


Q ss_pred             HHHHHcCcCCCCe--EEEeeccccccccccC
Q 018973          186 ELCEREKIKKVPH--FSFYKSMEKIHEEEGI  214 (348)
Q Consensus       186 ~l~~~~~V~~~Pt--~~~~~~g~~v~~~~G~  214 (348)
                      .+...||+.++|+  |++-++|+.+....|.
T Consensus       136 ~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~  166 (184)
T TIGR01626       136 AVKNAWQLNSEDSAIIVLDKTGKVKFVKEGA  166 (184)
T ss_pred             hHHHhcCCCCCCceEEEECCCCcEEEEEeCC
Confidence            4566888989865  3556789988888885

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=98.71  E-value=6.5e-08  Score=75.68  Aligned_cols=85  Identities=29%  Similarity=0.488  Sum_probs=69.8

Q ss_pred             CcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECC-CchhHHHHHHhCC--CCccceEEEEeCCeEEEEEeC-
Q 018973          253 QKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGD-ENDSCMQFLRDMN--VVEVPTFLFIRDGQIRGRYVG-  328 (348)
Q Consensus       253 ~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~-~~~~~~~l~~~~~--V~~~PTl~~~~~G~~v~~~~G-  328 (348)
                      ++++++.||++||++|+.+.|.+.++++.+...+.++.+|.. ...+   +...|+  +..+|+++++.+|+.+....+ 
T Consensus        32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  108 (127)
T COG0526          32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPD---LAAEFGVAVRSIPTLLLFKDGKEVDRLVGG  108 (127)
T ss_pred             CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChH---HHHHHhhhhccCCeEEEEeCcchhhhhhhc
Confidence            679999999999999999999999999999766899999996 5555   888888  899999999988877666665 


Q ss_pred             -C-ChHHHHHHHHH
Q 018973          329 -S-GKGELIGEILR  340 (348)
Q Consensus       329 -~-~~~~L~~~l~~  340 (348)
                       . ....+......
T Consensus       109 ~~~~~~~~~~~~~~  122 (127)
T COG0526         109 KVLPKEALIDALGE  122 (127)
T ss_pred             ccCCHHHHHHHhcc
Confidence             4 55555555443

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]

Probab=98.69  E-value=3.5e-08  Score=82.16  Aligned_cols=72  Identities=19%  Similarity=0.341  Sum_probs=56.3

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC----CcEEEEEeCCCc----------------------hhHHHHHHHc
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN----DVEFILVMGDES----------------------EKTKELCERE  191 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~----~v~f~~vd~d~~----------------------~~~~~l~~~~  191 (348)
                      .||.|.++|.|.||+|||.+-|.|.++.++..    .+.++-|+-|.+                      +...+++++|
T Consensus        32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky  111 (157)
T KOG2501|consen   32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY  111 (157)
T ss_pred             CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence            58999999999999999999999988877642    366666666543                      2346889999


Q ss_pred             CcCCCCeEEEee-cccccc
Q 018973          192 KIKKVPHFSFYK-SMEKIH  209 (348)
Q Consensus       192 ~V~~~Pt~~~~~-~g~~v~  209 (348)
                      +|.++|++++.+ +|..+.
T Consensus       112 ~v~~iP~l~i~~~dG~~v~  130 (157)
T KOG2501|consen  112 EVKGIPALVILKPDGTVVT  130 (157)
T ss_pred             ccCcCceeEEecCCCCEeh
Confidence            999999987775 565554

>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=98.69  E-value=1.4e-08  Score=99.31  Aligned_cols=84  Identities=17%  Similarity=0.381  Sum_probs=69.3

Q ss_pred             cceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhC---CcEEEEEEECCCchhHHHHHHhCC
Q 018973          231 SAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMA---GTVVFARMNGDENDSCMQFLRDMN  307 (348)
Q Consensus       231 ~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~---~~v~~~~vd~~~~~~~~~l~~~~~  307 (348)
                      ++++.+ +.+.|...+...   ++..+|.||++|||+|+.+.|.++++++...   +-+.++.|||-+..+ ..+|++|+
T Consensus        39 D~ii~L-d~~tf~~~v~~~---~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N-~~lCRef~  113 (606)
T KOG1731|consen   39 DPIIEL-DVDTFNAAVFGS---RKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEEN-VKLCREFS  113 (606)
T ss_pred             CCeEEe-ehhhhHHHhccc---chhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhh-hhhHhhcC
Confidence            555555 567888888763   5788999999999999999999999998874   448888999875442 45999999


Q ss_pred             CCccceEEEEeC
Q 018973          308 VVEVPTFLFIRD  319 (348)
Q Consensus       308 V~~~PTl~~~~~  319 (348)
                      |.++||+.+|..
T Consensus       114 V~~~Ptlryf~~  125 (606)
T KOG1731|consen  114 VSGYPTLRYFPP  125 (606)
T ss_pred             CCCCceeeecCC
Confidence            999999999954

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=98.69  E-value=3.9e-08  Score=71.53  Aligned_cols=67  Identities=13%  Similarity=0.198  Sum_probs=51.0

Q ss_pred             EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchh-HHHHHHHcCcCCCCeEEEeeccccccccccCCCCcc
Q 018973          143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEK-TKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL  219 (348)
Q Consensus       143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~-~~~l~~~~~V~~~Pt~~~~~~g~~v~~~~G~~~~~l  219 (348)
                      +..|+++||++|+.+.+.|++     .++.+..+|+++.++ ..++.+.+++.++|++++.  |+.   +.|.+++.+
T Consensus         2 i~lf~~~~C~~C~~~~~~l~~-----~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g~~~~~i   69 (74)
T TIGR02196         2 VKVYTTPWCPPCKKAKEYLTS-----KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVGFDPEKL   69 (74)
T ss_pred             EEEEcCCCChhHHHHHHHHHH-----CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---EeeCCHHHH
Confidence            568999999999999988876     468899999887543 3457888999999999885  543   455444433

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=98.67  E-value=2.7e-07  Score=79.36  Aligned_cols=93  Identities=15%  Similarity=0.216  Sum_probs=70.6

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhC-CcEEEEEEECCCc--------hhHH------------------HHHH
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMA-GTVVFARMNGDEN--------DSCM------------------QFLR  304 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~~--------~~~~------------------~l~~  304 (348)
                      .+++++|+||++||+.|....+.+.++.++++ .++.|+.|+.+..        ...+                  .+++
T Consensus        24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~  103 (171)
T cd02969          24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK  103 (171)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence            36899999999999999999999999999996 4589999887642        1212                  2455


Q ss_pred             hCCCCccceEEEE-eCCeEEEEEe---------CC-ChHHHHHHHHHHhCC
Q 018973          305 DMNVVEVPTFLFI-RDGQIRGRYV---------GS-GKGELIGEILRYQGV  344 (348)
Q Consensus       305 ~~~V~~~PTl~~~-~~G~~v~~~~---------G~-~~~~L~~~l~~~~~~  344 (348)
                      .|++..+|+++++ ++|+++....         +. +..++.+.|+..+..
T Consensus       104 ~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~  154 (171)
T cd02969         104 AYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAG  154 (171)
T ss_pred             HcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcC
Confidence            6889999966555 7999886531         22 568899999887643

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]

Probab=98.65  E-value=9.1e-08  Score=79.66  Aligned_cols=73  Identities=15%  Similarity=0.367  Sum_probs=58.7

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCc---EEEEEEECCCch----------------------hHHHHHHhC
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGT---VVFARMNGDEND----------------------SCMQFLRDM  306 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~---v~~~~vd~~~~~----------------------~~~~l~~~~  306 (348)
                      .+|.|.++|.|.||+||+.+.|.++++.++..+.   +.++.|+.|...                      ..+++.++|
T Consensus        32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky  111 (157)
T KOG2501|consen   32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY  111 (157)
T ss_pred             CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence            4799999999999999999999999998888655   666666665322                      245688889


Q ss_pred             CCCccceEEEE-eCCeEEE
Q 018973          307 NVVEVPTFLFI-RDGQIRG  324 (348)
Q Consensus       307 ~V~~~PTl~~~-~~G~~v~  324 (348)
                      +|.++|++++. .+|..+.
T Consensus       112 ~v~~iP~l~i~~~dG~~v~  130 (157)
T KOG2501|consen  112 EVKGIPALVILKPDGTVVT  130 (157)
T ss_pred             ccCcCceeEEecCCCCEeh
Confidence            99999998777 5887664

>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=98.65  E-value=9.1e-08  Score=81.57  Aligned_cols=95  Identities=15%  Similarity=0.242  Sum_probs=84.7

Q ss_pred             CCCccceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhC
Q 018973          227 GDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDM  306 (348)
Q Consensus       227 ~~~~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~  306 (348)
                      ...++....+.+..+|-+....    ...||+.||-+.-..|+-|...|+.|++.+-+ .+|++||++..+-   |+.++
T Consensus        62 ~~GhG~y~ev~~Ekdf~~~~~k----S~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e-TrFikvnae~~PF---lv~kL  133 (211)
T KOG1672|consen   62 SKGHGEYEEVASEKDFFEEVKK----SEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE-TRFIKVNAEKAPF---LVTKL  133 (211)
T ss_pred             HcCCceEEEeccHHHHHHHhhc----CceEEEEEEcCCCcceehHHHHHHHHHHhccc-ceEEEEecccCce---eeeee
Confidence            3456777788888888777764    57899999999999999999999999999865 8999999999998   99999


Q ss_pred             CCCccceEEEEeCCeEEEEEeCC
Q 018973          307 NVVEVPTFLFIRDGQIRGRYVGS  329 (348)
Q Consensus       307 ~V~~~PTl~~~~~G~~v~~~~G~  329 (348)
                      +|..+|++++|++|+.+.+++|.
T Consensus       134 ~IkVLP~v~l~k~g~~~D~iVGF  156 (211)
T KOG1672|consen  134 NIKVLPTVALFKNGKTVDYVVGF  156 (211)
T ss_pred             eeeEeeeEEEEEcCEEEEEEeeH
Confidence            99999999999999999999986

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=5.3e-07  Score=74.33  Aligned_cols=88  Identities=16%  Similarity=0.257  Sum_probs=71.9

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHH---HHHHHHhCCcEEEEEEECCCc-------------hhHHHHHHhCCCCccceEE
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTV---IKLSRQMAGTVVFARMNGDEN-------------DSCMQFLRDMNVVEVPTFL  315 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~~~~-------------~~~~~l~~~~~V~~~PTl~  315 (348)
                      .++..+++|..+.|..|.++...+   +++.+.+.+++.++++++...             ...++|++.|+|+++||++
T Consensus        41 ~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtfv  120 (182)
T COG2143          41 NDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTFV  120 (182)
T ss_pred             cCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceEE
Confidence            588999999999999999998776   556666667788888887522             1245799999999999999


Q ss_pred             EE-eCCeEEEEEeCC-ChHHHHHHHH
Q 018973          316 FI-RDGQIRGRYVGS-GKGELIGEIL  339 (348)
Q Consensus       316 ~~-~~G~~v~~~~G~-~~~~L~~~l~  339 (348)
                      +| ++|+.+..+-|. +++++...++
T Consensus       121 Ffdk~Gk~Il~lPGY~ppe~Fl~vlk  146 (182)
T COG2143         121 FFDKTGKTILELPGYMPPEQFLAVLK  146 (182)
T ss_pred             EEcCCCCEEEecCCCCCHHHHHHHHH
Confidence            99 579999999999 8888776554

>smart00594 UAS UAS domain

Probab=98.63  E-value=1.7e-07  Score=76.15  Aligned_cols=73  Identities=21%  Similarity=0.211  Sum_probs=55.7

Q ss_pred             HHHHHHHHhc--CCCEEEEEEeCCCCHHHHhhhhH------HHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeE
Q 018973          128 EEFDEALRLA--KNKLVVVEFAASRSLDSSKIYPF------MVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHF  199 (348)
Q Consensus       128 ~~f~~~l~~~--~~k~vvV~F~a~wC~~C~~~~p~------l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~  199 (348)
                      ..|+++++.+  .+|+++|+|+++||++|+.+...      +.++.++  ++.+..+|++..+ ..++++.|+++++|++
T Consensus        14 gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~--~fv~~~~dv~~~e-g~~l~~~~~~~~~P~~   90 (122)
T smart00594       14 GSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE--NFIFWQVDVDTSE-GQRVSQFYKLDSFPYV   90 (122)
T ss_pred             CCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc--CEEEEEecCCChh-HHHHHHhcCcCCCCEE
Confidence            3555555544  37899999999999999998754      3333332  4888889988655 5789999999999999


Q ss_pred             EEee
Q 018973          200 SFYK  203 (348)
Q Consensus       200 ~~~~  203 (348)
                      +++.
T Consensus        91 ~~l~   94 (122)
T smart00594       91 AIVD   94 (122)
T ss_pred             EEEe
Confidence            8884

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=98.61  E-value=2.2e-07  Score=76.75  Aligned_cols=87  Identities=18%  Similarity=0.164  Sum_probs=65.9

Q ss_pred             CCcEEEEEEe-CCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchhHHH------------------HHHhCCCCcc
Q 018973          252 DQKLIVLDVG-LKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDSCMQ------------------FLRDMNVVEV  311 (348)
Q Consensus       252 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~~~~------------------l~~~~~V~~~  311 (348)
                      .+++++|+|| +.||+.|....+.+.++.+++.+ ++.++.|..+.....++                  +.+.|++...
T Consensus        22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~  101 (140)
T cd03017          22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE  101 (140)
T ss_pred             CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence            3688999999 68999999999999999888853 48888888765444333                  4445777777


Q ss_pred             ---------ceEEEE-eCCeEEEEEeCC-ChHHHHHHH
Q 018973          312 ---------PTFLFI-RDGQIRGRYVGS-GKGELIGEI  338 (348)
Q Consensus       312 ---------PTl~~~-~~G~~v~~~~G~-~~~~L~~~l  338 (348)
                               |+.+++ ++|+++..+.|. ..+.+.+.+
T Consensus       102 ~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~  139 (140)
T cd03017         102 KKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL  139 (140)
T ss_pred             cccccCCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence                     865444 689999999999 666666543

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=98.59  E-value=3.2e-07  Score=73.66  Aligned_cols=89  Identities=20%  Similarity=0.322  Sum_probs=60.2

Q ss_pred             ChhhHHHHhhhcccCCcEEEEEEeC-------CCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHH----HHHH--
Q 018973          238 SKEDVEKLIDDHKVDQKLIVLDVGL-------KHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCM----QFLR--  304 (348)
Q Consensus       238 s~~~~~~~l~~~~~~~k~vvV~F~a-------~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~----~l~~--  304 (348)
                      .-+++.+.++.....+++++|+|++       +||+.|+...|.+++.....+++..++.+.+...+..+    .+.+  
T Consensus         4 gy~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p   83 (119)
T PF06110_consen    4 GYDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDP   83 (119)
T ss_dssp             CHHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--
T ss_pred             CHHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcc
Confidence            4567888887655567899999986       59999999999999998887777889988875433111    2445  


Q ss_pred             hCCCCccceEEEEeCCeEEEEEeCC
Q 018973          305 DMNVVEVPTFLFIRDGQIRGRYVGS  329 (348)
Q Consensus       305 ~~~V~~~PTl~~~~~G~~v~~~~G~  329 (348)
                      ++++.++||++-+..+   .++.+.
T Consensus        84 ~~~l~~IPTLi~~~~~---~rL~e~  105 (119)
T PF06110_consen   84 DLKLKGIPTLIRWETG---ERLVEE  105 (119)
T ss_dssp             CC---SSSEEEECTSS----EEEHH
T ss_pred             eeeeeecceEEEECCC---Cccchh
Confidence            5999999999999877   445554

; PDB: 1V9W_A 1WOU_A.

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=98.59  E-value=2.6e-07  Score=63.96  Aligned_cols=63  Identities=21%  Similarity=0.221  Sum_probs=52.0

Q ss_pred             EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeecc
Q 018973          143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSM  205 (348)
Q Consensus       143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g  205 (348)
                      ++.||++||++|+.+.+.+.++.....++.+..+|+++.....+....+++..+|+++++.+|
T Consensus         1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~   63 (69)
T cd01659           1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG   63 (69)
T ss_pred             CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence            578999999999999999999955556799999999985542222358999999999999876

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []

Probab=98.58  E-value=2.6e-06  Score=79.01  Aligned_cols=209  Identities=12%  Similarity=0.151  Sum_probs=127.9

Q ss_pred             CCCCCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHh-----hhhHHHHHH-HH--cCCcEEEEEeCCCchhHHH
Q 018973          115 APRDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSK-----IYPFMVDLS-RQ--CNDVEFILVMGDESEKTKE  186 (348)
Q Consensus       115 ~~~~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~-----~~p~l~~la-~~--~~~v~f~~vd~d~~~~~~~  186 (348)
                      ..+..+|.++ |..+|.++++  +....+|+|+.+--..=-.     +...+-+|+ +.  ..++.|+.||..+   ...
T Consensus        30 YDGkDRVi~L-neKNfk~~lK--kyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~K---d~k  103 (383)
T PF01216_consen   30 YDGKDRVIDL-NEKNFKRALK--KYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKK---DAK  103 (383)
T ss_dssp             -SSS--CEEE--TTTHHHHHH--H-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTT---THH
T ss_pred             CCCccceEEc-chhHHHHHHH--hhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHH---HHH
Confidence            4456678888 8999999998  5788889999876332211     112223343 32  3569999999998   567


Q ss_pred             HHHHcCcCCCCeEEEeeccccccccccCCCCcccccccccCCCccceeecCChhhHHHHhhhcccCCcEEEEEEeCCCCh
Q 018973          187 LCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQLMGDVLYYGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCG  266 (348)
Q Consensus       187 l~~~~~V~~~Pt~~~~~~g~~v~~~~G~~~~~l~~~v~~~~~~~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~  266 (348)
                      +++++|+...+++.+|++|+.+....-..++.|+..+...-.  .++..+.+..+++.+-.-   ...+.+|-|+.+.-+
T Consensus       104 lAKKLgv~E~~SiyVfkd~~~IEydG~~saDtLVeFl~dl~e--dPVeiIn~~~e~~~Fe~i---ed~~klIGyFk~~~s  178 (383)
T PF01216_consen  104 LAKKLGVEEEGSIYVFKDGEVIEYDGERSADTLVEFLLDLLE--DPVEIINNKHELKAFERI---EDDIKLIGYFKSEDS  178 (383)
T ss_dssp             HHHHHT--STTEEEEEETTEEEEE-S--SHHHHHHHHHHHHS--SSEEEE-SHHHHHHHHH-----SS-EEEEE-SSTTS
T ss_pred             HHHhcCccccCcEEEEECCcEEEecCccCHHHHHHHHHHhcc--cchhhhcChhhhhhhhhc---ccceeEEEEeCCCCc
Confidence            999999999999999999999975533556777765544322  456666676666655432   234556665554322


Q ss_pred             hhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeC--CeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973          267 PCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRD--GQIRGRYVGS-GKGELIGEILRYQG  343 (348)
Q Consensus       267 ~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~--G~~v~~~~G~-~~~~L~~~l~~~~~  343 (348)
                      .   ....++++|.++.+.++|+.+=   ++.   +++++++. +=.+-+|+-  .+.+..-... ++++|.+|++++..
T Consensus       179 ~---~yk~FeeAAe~F~p~IkFfAtf---d~~---vAk~L~lK-~nev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~r  248 (383)
T PF01216_consen  179 E---HYKEFEEAAEHFQPYIKFFATF---DKK---VAKKLGLK-LNEVDFYEPFMDEPITIPGKPYTEEELVEFIEEHKR  248 (383)
T ss_dssp             H---HHHHHHHHHHHCTTTSEEEEE----SHH---HHHHHT-S-TT-EEEE-TTSSSEEEESSSS--HHHHHHHHHHT-S
T ss_pred             H---HHHHHHHHHHhhcCceeEEEEe---cch---hhhhcCcc-ccceeeeccccCCCccCCCCCCCHHHHHHHHHHhch
Confidence            2   2345789999998888888763   333   99999986 557888852  4444432333 89999999999865


Q ss_pred             C
Q 018973          344 V  344 (348)
Q Consensus       344 ~  344 (348)
                      .
T Consensus       249 p  249 (383)
T PF01216_consen  249 P  249 (383)
T ss_dssp             -
T ss_pred             h
Confidence            4

It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

Probab=98.57  E-value=1e-06  Score=70.80  Aligned_cols=101  Identities=12%  Similarity=0.168  Sum_probs=76.2

Q ss_pred             hHHHHhhhcccCCcEEEEEEeCC----CChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEE
Q 018973          241 DVEKLIDDHKVDQKLIVLDVGLK----HCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLF  316 (348)
Q Consensus       241 ~~~~~l~~~~~~~k~vvV~F~a~----wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~  316 (348)
                      .+++.+..++.+.|.++|+++++    ||..|+.... =.++.+-+..++.+...|++..+. .++++.+++.++|++++
T Consensus         5 s~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~-~~~v~~~ln~~fv~w~~dv~~~eg-~~la~~l~~~~~P~~~~   82 (116)
T cd02991           5 TYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLC-APEVIEYINTRMLFWACSVAKPEG-YRVSQALRERTYPFLAM   82 (116)
T ss_pred             cHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcC-CHHHHHHHHcCEEEEEEecCChHH-HHHHHHhCCCCCCEEEE
Confidence            34555555555799999999999    8899977631 133333334468899999987653 66999999999999877


Q ss_pred             E--e--CCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973          317 I--R--DGQIRGRYVGS-GKGELIGEILRYQG  343 (348)
Q Consensus       317 ~--~--~G~~v~~~~G~-~~~~L~~~l~~~~~  343 (348)
                      +  +  +.+++.++.|. ++++|...|.....
T Consensus        83 l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~  114 (116)
T cd02991          83 IMLKDNRMTIVGRLEGLIQPEDLINRLTFIMD  114 (116)
T ss_pred             EEecCCceEEEEEEeCCCCHHHHHHHHHHHHh
Confidence            7  2  34678999999 99999999887643

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.

>KOG3425 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.53  E-value=3.5e-07  Score=71.95  Aligned_cols=97  Identities=20%  Similarity=0.255  Sum_probs=71.2

Q ss_pred             CChhhHHHHhhhcccCCcEEEEEEeC--------CCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHH----HHHH
Q 018973          237 HSKEDVEKLIDDHKVDQKLIVLDVGL--------KHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCM----QFLR  304 (348)
Q Consensus       237 ~s~~~~~~~l~~~~~~~k~vvV~F~a--------~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~----~l~~  304 (348)
                      ...++|++.+++.. +++.++++|++        +|||.|.+..|.+.+..++.+.++.|+.+++.+.+..+    .+.+
T Consensus        10 ~g~e~~~~~~~~~~-n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~   88 (128)
T KOG3425|consen   10 PGYESFEETLKNVE-NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRK   88 (128)
T ss_pred             chHHHHHHHHHHHh-CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCcccc
Confidence            34578888887764 34458999986        69999999999999999988888999999987654221    2566


Q ss_pred             hCCC-CccceEEEEeCCeEEEEEeCC--ChHHHHH
Q 018973          305 DMNV-VEVPTFLFIRDGQIRGRYVGS--GKGELIG  336 (348)
Q Consensus       305 ~~~V-~~~PTl~~~~~G~~v~~~~G~--~~~~L~~  336 (348)
                      ..++ .++||++-++++  ..+..|.  ..+.|.+
T Consensus        89 d~~~lt~vPTLlrw~~~--~~rL~~~q~~~~~Lve  121 (128)
T KOG3425|consen   89 DPGILTAVPTLLRWKRQ--PQRLDGLQCLNDHLVE  121 (128)
T ss_pred             CCCceeecceeeEEcCc--cccchHhHhhHHHHHH
Confidence            6677 899999998752  3444554  4444443

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=98.51  E-value=2.9e-07  Score=75.44  Aligned_cols=84  Identities=18%  Similarity=0.303  Sum_probs=54.3

Q ss_pred             HHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHH---cCcCCCCeEEEee-
Q 018973          128 EEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCER---EKIKKVPHFSFYK-  203 (348)
Q Consensus       128 ~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~---~~V~~~Pt~~~~~-  203 (348)
                      ++..+.++....+.-++-|..+|||.|+..-|.|.++++..+++.+-.+..|+   ..++..+   .|.+.+|||+++. 
T Consensus        30 ~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~---~~el~~~~lt~g~~~IP~~I~~d~  106 (129)
T PF14595_consen   30 EEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDE---NKELMDQYLTNGGRSIPTFIFLDK  106 (129)
T ss_dssp             HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHH---HHHHTTTTTT-SS--SSEEEEE-T
T ss_pred             HHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecC---ChhHHHHHHhCCCeecCEEEEEcC
Confidence            44455666556778999999999999999999999999999887666666555   4455554   4789999999995 


Q ss_pred             ccccccccccC
Q 018973          204 SMEKIHEEEGI  214 (348)
Q Consensus       204 ~g~~v~~~~G~  214 (348)
                      +|+++.+++..
T Consensus       107 ~~~~lg~wger  117 (129)
T PF14595_consen  107 DGKELGRWGER  117 (129)
T ss_dssp             T--EEEEEESS
T ss_pred             CCCEeEEEcCC
Confidence            57888776553

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=98.49  E-value=4.4e-07  Score=66.86  Aligned_cols=61  Identities=10%  Similarity=0.094  Sum_probs=43.8

Q ss_pred             EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHH--cCcCCCCeEEEeecccccc
Q 018973          143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCER--EKIKKVPHFSFYKSMEKIH  209 (348)
Q Consensus       143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~--~~V~~~Pt~~~~~~g~~v~  209 (348)
                      ++.|+++||++|+++.+.|.++     ++.|-.+|+++.+...+...+  +++..+|++ ++.+|+.+.
T Consensus         2 v~ly~~~~C~~C~~~~~~L~~~-----~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~   64 (77)
T TIGR02200         2 ITVYGTTWCGYCAQLMRTLDKL-----GAAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFLT   64 (77)
T ss_pred             EEEEECCCChhHHHHHHHHHHc-----CCceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEec
Confidence            6789999999999999999775     345567888775432222222  489999997 466776554

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=98.49  E-value=9.4e-07  Score=76.81  Aligned_cols=90  Identities=18%  Similarity=0.314  Sum_probs=68.5

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECC--------CchhHHHHHH-hCCCC------------
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGD--------ENDSCMQFLR-DMNVV------------  309 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~--------~~~~~~~l~~-~~~V~------------  309 (348)
                      .+++++|.|||+||+.|.+ .+.|+++.++|++ .+.++.+.++        ..++++++++ ++++.            
T Consensus        24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~~Fpv~~k~dvnG~  102 (183)
T PRK10606         24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGVTFPMFSKIEVNGE  102 (183)
T ss_pred             CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccCCCceeEEEEccCCC
Confidence            4799999999999999974 7899999999964 4888888774        2345666776 55541            


Q ss_pred             -----------ccc--------------------------------eEEEEeCCeEEEEEeCC-ChHH--HHHHHHHHh
Q 018973          310 -----------EVP--------------------------------TFLFIRDGQIRGRYVGS-GKGE--LIGEILRYQ  342 (348)
Q Consensus       310 -----------~~P--------------------------------Tl~~~~~G~~v~~~~G~-~~~~--L~~~l~~~~  342 (348)
                                 ..|                                .|++.++|+++.|+... .+.+  |.+.|++++
T Consensus       103 ~~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KFLv~~~G~vv~r~~~~~~p~~~~i~~~i~~~l  181 (183)
T PRK10606        103 GRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGQVIQRFSPDMTPEDPIVMESIKLAL  181 (183)
T ss_pred             CCCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEEEECCCCcEEEEECCCCCCCHHHHHHHHHHHh
Confidence                       233                                46777999999999877 4444  888888776

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=98.49  E-value=4.7e-07  Score=75.28  Aligned_cols=60  Identities=13%  Similarity=0.131  Sum_probs=50.5

Q ss_pred             CCCEEEEEEeCCC-CHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCC
Q 018973          138 KNKLVVVEFAASR-SLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVP  197 (348)
Q Consensus       138 ~~k~vvV~F~a~w-C~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~P  197 (348)
                      +++++||.||+.| |++|+...|.|.++.++++++.++.|+.|......+..+++++..+|
T Consensus        25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~   85 (143)
T cd03014          25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVT   85 (143)
T ss_pred             CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCce
Confidence            6889999999999 69999999999999999989999999998755456666676665454

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=98.48  E-value=5.1e-07  Score=77.49  Aligned_cols=60  Identities=13%  Similarity=0.106  Sum_probs=52.0

Q ss_pred             CCCEEEEEEeCCC-CHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCC
Q 018973          138 KNKLVVVEFAASR-SLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVP  197 (348)
Q Consensus       138 ~~k~vvV~F~a~w-C~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~P  197 (348)
                      +++++||.||++| |++|+...|.|.++++++.++.++.|..|......++++++++..+|
T Consensus        43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~~~~~~~f~~~~~~~~~~  103 (167)
T PRK00522         43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADLPFAQKRFCGAEGLENVI  103 (167)
T ss_pred             CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCCHHHHHHHHHhCCCCCce
Confidence            6889999999999 99999999999999999888999999998765567788888776433

>PTZ00256 glutathione peroxidase; Provisional

Probab=98.47  E-value=5.9e-07  Score=78.26  Aligned_cols=69  Identities=22%  Similarity=0.270  Sum_probs=47.3

Q ss_pred             CCCEE-EEEEeCCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCC--------chhHHHH-HHHcCcCCCCeEE-Eeec
Q 018973          138 KNKLV-VVEFAASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDE--------SEKTKEL-CEREKIKKVPHFS-FYKS  204 (348)
Q Consensus       138 ~~k~v-vV~F~a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~--------~~~~~~l-~~~~~V~~~Pt~~-~~~~  204 (348)
                      ++++| ++.|||+||++|+...|.|.++.++|.  ++.++.|+++.        .++..+. .+++++. +|.+. +..+
T Consensus        39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~-fpv~~d~d~~  117 (183)
T PTZ00256         39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVD-FPLFQKIEVN  117 (183)
T ss_pred             CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCC-CCCceEEecC
Confidence            57754 566799999999999999999999986  48999998642        1223333 3466664 66653 2334


Q ss_pred             ccc
Q 018973          205 MEK  207 (348)
Q Consensus       205 g~~  207 (348)
                      |+.
T Consensus       118 g~~  120 (183)
T PTZ00256        118 GEN  120 (183)
T ss_pred             CCC
Confidence            443

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=98.47  E-value=6e-07  Score=77.17  Aligned_cols=72  Identities=17%  Similarity=0.246  Sum_probs=57.4

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCc--------h------------------hHHHHHH
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDES--------E------------------KTKELCE  189 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~--------~------------------~~~~l~~  189 (348)
                      +++++||+||++||+.|....+.|.++.++|+  ++.|+.|..|..        +                  ....+++
T Consensus        24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~  103 (171)
T cd02969          24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK  103 (171)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence            57999999999999999999999999999987  489999987641        1                  1235667


Q ss_pred             HcCcCCCCeEEEee-cccccc
Q 018973          190 REKIKKVPHFSFYK-SMEKIH  209 (348)
Q Consensus       190 ~~~V~~~Pt~~~~~-~g~~v~  209 (348)
                      .|+|..+|+++++. +|+.+.
T Consensus       104 ~~~v~~~P~~~lid~~G~v~~  124 (171)
T cd02969         104 AYGAACTPDFFLFDPDGKLVY  124 (171)
T ss_pred             HcCCCcCCcEEEECCCCeEEE
Confidence            88888889877774 666553

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=98.45  E-value=1.1e-06  Score=70.58  Aligned_cols=84  Identities=15%  Similarity=0.251  Sum_probs=58.7

Q ss_pred             ecCHHHHHHHHHh--cCCCEEEEEEeC-------CCCHHHHhhhhHHHHHHHHcC-CcEEEEEeCCCchhH----HHHHH
Q 018973          124 VHSIEEFDEALRL--AKNKLVVVEFAA-------SRSLDSSKIYPFMVDLSRQCN-DVEFILVMGDESEKT----KELCE  189 (348)
Q Consensus       124 v~s~~~f~~~l~~--~~~k~vvV~F~a-------~wC~~C~~~~p~l~~la~~~~-~v~f~~vd~d~~~~~----~~l~~  189 (348)
                      |..-++|.+.++.  ..+++++|.|++       +||+.|+...|.+++.....+ +..|+.|.+.+.+..    ..+-.
T Consensus         2 v~gy~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~   81 (119)
T PF06110_consen    2 VRGYDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRT   81 (119)
T ss_dssp             EECHHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH
T ss_pred             ccCHHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceE
Confidence            4567899999886  457899999996       599999999999999888765 489998987653211    12333


Q ss_pred             --HcCcCCCCeEEEeecccc
Q 018973          190 --REKIKKVPHFSFYKSMEK  207 (348)
Q Consensus       190 --~~~V~~~Pt~~~~~~g~~  207 (348)
                        +++++++||++-+.+++.
T Consensus        82 ~p~~~l~~IPTLi~~~~~~r  101 (119)
T PF06110_consen   82 DPDLKLKGIPTLIRWETGER  101 (119)
T ss_dssp             --CC---SSSEEEECTSS-E
T ss_pred             cceeeeeecceEEEECCCCc
Confidence              599999999999987643

; PDB: 1V9W_A 1WOU_A.

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=98.45  E-value=1.4e-06  Score=70.26  Aligned_cols=74  Identities=23%  Similarity=0.354  Sum_probs=59.2

Q ss_pred             CCcEEEEEEeCC-CChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchhHHH------------------HHHhCCCC--
Q 018973          252 DQKLIVLDVGLK-HCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDSCMQ------------------FLRDMNVV--  309 (348)
Q Consensus       252 ~~k~vvV~F~a~-wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~~~~------------------l~~~~~V~--  309 (348)
                      .+++++|.||+. ||+.|....+.|.++.++++. ++.++.|..+..++.++                  +++.|++.  
T Consensus        24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~  103 (124)
T PF00578_consen   24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE  103 (124)
T ss_dssp             TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred             CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence            479999999999 999999999999999998864 59999999886654443                  45557887  


Q ss_pred             ----ccce-EEEEeCCeEEEE
Q 018973          310 ----EVPT-FLFIRDGQIRGR  325 (348)
Q Consensus       310 ----~~PT-l~~~~~G~~v~~  325 (348)
                          .+|+ +++.++|+++++
T Consensus       104 ~~~~~~p~~~lid~~g~I~~~  124 (124)
T PF00578_consen  104 KDTLALPAVFLIDPDGKIRYA  124 (124)
T ss_dssp             TTSEESEEEEEEETTSBEEEE
T ss_pred             cCCceEeEEEEECCCCEEEeC
Confidence                8896 455578888753

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=98.44  E-value=4.4e-07  Score=75.00  Aligned_cols=55  Identities=22%  Similarity=0.160  Sum_probs=42.9

Q ss_pred             CCCEEEEEEe-CCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchhHHHHHHHcC
Q 018973          138 KNKLVVVEFA-ASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEKTKELCEREK  192 (348)
Q Consensus       138 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~~~~l~~~~~  192 (348)
                      ++++++|.|| +.||+.|....+.|.++.+++.  ++.++.|..|..+...+.+++++
T Consensus        22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~   79 (140)
T cd03017          22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYG   79 (140)
T ss_pred             CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhC
Confidence            5789999999 5899999999999999998874  58899988876544444444443

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=98.43  E-value=1.4e-06  Score=72.34  Aligned_cols=86  Identities=13%  Similarity=0.102  Sum_probs=64.1

Q ss_pred             CCcEEEEEEeCCC-ChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchh--------------------HHHHHHhCCCCc
Q 018973          252 DQKLIVLDVGLKH-CGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDS--------------------CMQFLRDMNVVE  310 (348)
Q Consensus       252 ~~k~vvV~F~a~w-C~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~--------------------~~~l~~~~~V~~  310 (348)
                      .+++++|+||+.| |++|+...+.|.++.+++. ++.++.|+.+....                    ...+++.|++..
T Consensus        25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~  103 (143)
T cd03014          25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-NTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLI  103 (143)
T ss_pred             CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-CCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCee
Confidence            3689999999998 6999999999999999985 58899988864221                    134666777753


Q ss_pred             ------cce-EEEEeCCeEEEEEeCC---ChHHHHHHH
Q 018973          311 ------VPT-FLFIRDGQIRGRYVGS---GKGELIGEI  338 (348)
Q Consensus       311 ------~PT-l~~~~~G~~v~~~~G~---~~~~L~~~l  338 (348)
                            .|+ +++.++|+++....|.   +..++.+.|
T Consensus       104 ~~~~~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~  141 (143)
T cd03014         104 KDLGLLARAVFVIDENGKVIYVELVPEITDEPDYEAAL  141 (143)
T ss_pred             ccCCccceEEEEEcCCCeEEEEEECCCcccCCCHHHHh
Confidence                  575 5555799999998875   345555544

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=98.41  E-value=1.4e-06  Score=60.23  Aligned_cols=63  Identities=22%  Similarity=0.337  Sum_probs=51.9

Q ss_pred             EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCC
Q 018973          257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDG  320 (348)
Q Consensus       257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G  320 (348)
                      ++.||..||+.|+++.+.+.++ .....++.+..++++...+.......+++..+|+++++.+|
T Consensus         1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~   63 (69)
T cd01659           1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG   63 (69)
T ss_pred             CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence            4789999999999999999988 44445699999999988763333358999999999999877

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>PLN02412 probable glutathione peroxidase

Probab=98.41  E-value=7e-07  Score=76.62  Aligned_cols=62  Identities=21%  Similarity=0.322  Sum_probs=48.5

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCCC--------chhH-HHHHHHcCcCCCCeEE
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGDE--------SEKT-KELCEREKIKKVPHFS  200 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d~--------~~~~-~~l~~~~~V~~~Pt~~  200 (348)
                      ++++|||.||++||++|+...|.|.++.++|.+  +.++.|+++.        .++. +.+++++++. +|.+.
T Consensus        28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~-fpvl~  100 (167)
T PLN02412         28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAE-FPIFD  100 (167)
T ss_pred             CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCC-CceEe
Confidence            679999999999999999999999999999974  8999998752        1122 2235677875 67653

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=98.38  E-value=1e-06  Score=72.21  Aligned_cols=90  Identities=20%  Similarity=0.386  Sum_probs=54.4

Q ss_pred             HHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHh---CCCCccceEEEE-
Q 018973          242 VEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRD---MNVVEVPTFLFI-  317 (348)
Q Consensus       242 ~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~---~~V~~~PTl~~~-  317 (348)
                      ..+.++..  .++..++.|..+|||.|....|.+.++++..+ ++.+-.+..|++.+   +.++   .|...+||++++ 
T Consensus        32 ~~~~l~~~--~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p-~i~~~~i~rd~~~e---l~~~~lt~g~~~IP~~I~~d  105 (129)
T PF14595_consen   32 QIEKLKSI--QKPYNILVITETWCGDCARNVPVLAKIAEANP-NIEVRIILRDENKE---LMDQYLTNGGRSIPTFIFLD  105 (129)
T ss_dssp             HHHHHHT----S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T-TEEEEEE-HHHHHH---HTTTTTT-SS--SSEEEEE-
T ss_pred             HHHHHHhc--CCCcEEEEEECCCchhHHHHHHHHHHHHHhCC-CCeEEEEEecCChh---HHHHHHhCCCeecCEEEEEc
Confidence            33344433  46778899999999999999999999999864 57777776666665   5554   467899999999 


Q ss_pred             eCCeEEEEEeCCChHHHHHHH
Q 018973          318 RDGQIRGRYVGSGKGELIGEI  338 (348)
Q Consensus       318 ~~G~~v~~~~G~~~~~L~~~l  338 (348)
                      ++|+.+++..... +.+.+.+
T Consensus       106 ~~~~~lg~wgerP-~~~~~~~  125 (129)
T PF14595_consen  106 KDGKELGRWGERP-KEVQELV  125 (129)
T ss_dssp             TT--EEEEEESS--HHHH---
T ss_pred             CCCCEeEEEcCCC-HHHhhcc
Confidence            5688888876652 3344333

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=98.37  E-value=2.6e-06  Score=62.64  Aligned_cols=73  Identities=18%  Similarity=0.343  Sum_probs=50.2

Q ss_pred             EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHh--CCCCccceEEEEeCCeEEEEEeCCChHHH
Q 018973          257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRD--MNVVEVPTFLFIRDGQIRGRYVGSGKGEL  334 (348)
Q Consensus       257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~--~~V~~~PTl~~~~~G~~v~~~~G~~~~~L  334 (348)
                      ++.||++||++|+++.+.|.++.      +.|-.+|+++.+...+..++  +++.++|++ ++.+|+.+.   ..+..++
T Consensus         2 v~ly~~~~C~~C~~~~~~L~~~~------~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~---~~~~~~~   71 (77)
T TIGR02200         2 ITVYGTTWCGYCAQLMRTLDKLG------AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFLT---NPSAAQV   71 (77)
T ss_pred             EEEEECCCChhHHHHHHHHHHcC------CceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEec---CCCHHHH
Confidence            56899999999999988876642      45667888877653333322  489999997 467886532   3355666


Q ss_pred             HHHHH
Q 018973          335 IGEIL  339 (348)
Q Consensus       335 ~~~l~  339 (348)
                      .+.|+
T Consensus        72 ~~~l~   76 (77)
T TIGR02200        72 KAKLQ   76 (77)
T ss_pred             HHHhh
Confidence            66554

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=98.37  E-value=4.3e-06  Score=61.93  Aligned_cols=71  Identities=17%  Similarity=0.358  Sum_probs=55.4

Q ss_pred             EEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeC-C-ChHHHHH
Q 018973          259 DVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVG-S-GKGELIG  336 (348)
Q Consensus       259 ~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G-~-~~~~L~~  336 (348)
                      .+++++|+.|..+...++++...++  +.+-.+|..+.++   + ++|||.++|++++  ||+.  ++.| . +.++|.+
T Consensus         4 ~v~~~~C~~C~~~~~~~~~~~~~~~--i~~ei~~~~~~~~---~-~~ygv~~vPalvI--ng~~--~~~G~~p~~~el~~   73 (76)
T PF13192_consen    4 KVFSPGCPYCPELVQLLKEAAEELG--IEVEIIDIEDFEE---I-EKYGVMSVPALVI--NGKV--VFVGRVPSKEELKE   73 (76)
T ss_dssp             EEECSSCTTHHHHHHHHHHHHHHTT--EEEEEEETTTHHH---H-HHTT-SSSSEEEE--TTEE--EEESS--HHHHHHH
T ss_pred             EEeCCCCCCcHHHHHHHHHHHHhcC--CeEEEEEccCHHH---H-HHcCCCCCCEEEE--CCEE--EEEecCCCHHHHHH
Confidence            3467889999999999999999983  7777777765554   5 9999999999976  7875  4678 4 7888888


Q ss_pred             HHH
Q 018973          337 EIL  339 (348)
Q Consensus       337 ~l~  339 (348)
                      +|+
T Consensus        74 ~l~   76 (76)
T PF13192_consen   74 LLE   76 (76)
T ss_dssp             HHH
T ss_pred             HhC
Confidence            874

...

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=98.36  E-value=1.8e-06  Score=71.83  Aligned_cols=46  Identities=13%  Similarity=0.142  Sum_probs=36.4

Q ss_pred             CcEEEEEEeCCCChhhhhhhhHHHHHHHHhC-CcEEEEEEECCCchh
Q 018973          253 QKLIVLDVGLKHCGPCVKVYPTVIKLSRQMA-GTVVFARMNGDENDS  298 (348)
Q Consensus       253 ~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~~~~  298 (348)
                      +..++++|++.||++|+...+.|.++.+++. ..+.++.|+.+..+.
T Consensus        24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~   70 (149)
T cd02970          24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEK   70 (149)
T ss_pred             CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHH
Confidence            3455665679999999999999999999985 348889888775443

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>KOG3414 consensus Component of the U4/U6

Probab=98.36  E-value=6.4e-06  Score=65.39  Aligned_cols=103  Identities=20%  Similarity=0.303  Sum_probs=83.4

Q ss_pred             eecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccce
Q 018973          234 VQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPT  313 (348)
Q Consensus       234 ~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PT  313 (348)
                      ..+++..+.++.+...  ..+.+||-|+-.|-+.|.++...|.++++...+-..++-+|+++-++   +.+-|++...||
T Consensus         6 p~L~s~~~VdqaI~~t--~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~---~~~~~~l~~p~t   80 (142)
T KOG3414|consen    6 PTLHSGWEVDQAILST--EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPD---FVKMYELYDPPT   80 (142)
T ss_pred             cccccHHHHHHHHhcc--cceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhh---hhhhhcccCCce
Confidence            4566778888887754  68999999999999999999999999999987667888899998776   999999999998


Q ss_pred             EEEEeCCeEE---------EEEeCC--ChHHHHHHHHHH
Q 018973          314 FLFIRDGQIR---------GRYVGS--GKGELIGEILRY  341 (348)
Q Consensus       314 l~~~~~G~~v---------~~~~G~--~~~~L~~~l~~~  341 (348)
                      +++|-+++-+         .++.++  +++++++.++..
T Consensus        81 vmfFfn~kHmkiD~gtgdn~Kin~~~~~kq~~Idiie~i  119 (142)
T KOG3414|consen   81 VMFFFNNKHMKIDLGTGDNNKINFAFEDKQEFIDIIETI  119 (142)
T ss_pred             EEEEEcCceEEEeeCCCCCceEEEEeccHHHHHHHHHHH
Confidence            8777555433         234444  788888888764

U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=98.35  E-value=2.9e-06  Score=73.14  Aligned_cols=91  Identities=19%  Similarity=0.143  Sum_probs=66.6

Q ss_pred             CCcEEEEEEe-CCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchh-------------------------HHHHHH
Q 018973          252 DQKLIVLDVG-LKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDS-------------------------CMQFLR  304 (348)
Q Consensus       252 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~-------------------------~~~l~~  304 (348)
                      .+++++|+|| +.||+.|....+.|.++.+++.+ ++.++.|..+....                         ..++++
T Consensus        28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~  107 (173)
T cd03015          28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR  107 (173)
T ss_pred             CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence            3689999999 89999999999999999999853 47777777664321                         113555


Q ss_pred             hCCCC------ccce-EEEEeCCeEEEEEeCC-----ChHHHHHHHHHHh
Q 018973          305 DMNVV------EVPT-FLFIRDGQIRGRYVGS-----GKGELIGEILRYQ  342 (348)
Q Consensus       305 ~~~V~------~~PT-l~~~~~G~~v~~~~G~-----~~~~L~~~l~~~~  342 (348)
                      .|++.      .+|+ +++.++|+++..+.+.     +.+++.+.|+.+.
T Consensus       108 ~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~~  157 (173)
T cd03015         108 DYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDALQ  157 (173)
T ss_pred             HhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence            67775      4675 4555799999988654     4567777776653

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins

Probab=98.33  E-value=1.8e-06  Score=72.93  Aligned_cols=71  Identities=15%  Similarity=0.238  Sum_probs=47.6

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhH-H--HHHHHHhCCcEEEEEEECCCchhHHHHHHhC--------CCCccceEEEE-eC
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPT-V--IKLSRQMAGTVVFARMNGDENDSCMQFLRDM--------NVVEVPTFLFI-RD  319 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~-l--~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~--------~V~~~PTl~~~-~~  319 (348)
                      .+|+++|.++.+||..|+.|... +  .++++.+..++.-+++|.++.++   +.+.|        +..++|+.+|. .+
T Consensus        36 e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pd---id~~y~~~~~~~~~~gGwPl~vfltPd  112 (163)
T PF03190_consen   36 ENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPD---IDKIYMNAVQAMSGSGGWPLTVFLTPD  112 (163)
T ss_dssp             HT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HH---HHHHHHHHHHHHHS---SSEEEEE-TT
T ss_pred             cCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCcc---HHHHHHHHHHHhcCCCCCCceEEECCC
Confidence            58999999999999999998753 3  56666666668899999999998   55554        78899976555 79


Q ss_pred             CeEEEE
Q 018973          320 GQIRGR  325 (348)
Q Consensus       320 G~~v~~  325 (348)
                      |+.+..
T Consensus       113 g~p~~~  118 (163)
T PF03190_consen  113 GKPFFG  118 (163)
T ss_dssp             S-EEEE
T ss_pred             CCeeee
Confidence            988765

; PDB: 3IRA_A.

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=98.32  E-value=1.8e-06  Score=69.55  Aligned_cols=55  Identities=24%  Similarity=0.244  Sum_probs=47.9

Q ss_pred             CCCEEEEEEeCC-CCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchhHHHHHHHcC
Q 018973          138 KNKLVVVEFAAS-RSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEKTKELCEREK  192 (348)
Q Consensus       138 ~~k~vvV~F~a~-wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~~~~l~~~~~  192 (348)
                      +++++||.||++ ||++|+...+.|.++.++++  ++.++.|..|..++.+++.++++
T Consensus        24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~   81 (124)
T PF00578_consen   24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYG   81 (124)
T ss_dssp             TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHT
T ss_pred             CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhc
Confidence            579999999999 99999999999999999876  69999999988665666666666

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=98.32  E-value=5e-06  Score=71.30  Aligned_cols=77  Identities=12%  Similarity=0.075  Sum_probs=58.9

Q ss_pred             CCcEEEEEEeCCC-ChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHH--------------------HHHHhCCCCc
Q 018973          252 DQKLIVLDVGLKH-CGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCM--------------------QFLRDMNVVE  310 (348)
Q Consensus       252 ~~k~vvV~F~a~w-C~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~--------------------~l~~~~~V~~  310 (348)
                      .+++++|+||+.| |++|....+.|.++.+++. ++.++.|+.|.....+                    .+++.||+..
T Consensus        43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~  121 (167)
T PRK00522         43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAI  121 (167)
T ss_pred             CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCCee
Confidence            4789999999999 9999999999999999984 6888888876422212                    4666778766


Q ss_pred             cc---------eE-EEEeCCeEEEEEeCC
Q 018973          311 VP---------TF-LFIRDGQIRGRYVGS  329 (348)
Q Consensus       311 ~P---------Tl-~~~~~G~~v~~~~G~  329 (348)
                      .|         +. ++.++|+++..+.+.
T Consensus       122 ~~~~~~g~~~r~tfvId~~G~I~~~~~~~  150 (167)
T PRK00522        122 AEGPLKGLLARAVFVLDENNKVVYSELVP  150 (167)
T ss_pred             cccccCCceeeEEEEECCCCeEEEEEECC
Confidence            66         54 555799999888643

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=98.32  E-value=1.3e-06  Score=75.94  Aligned_cols=71  Identities=14%  Similarity=0.175  Sum_probs=52.5

Q ss_pred             HhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCC--------CchhHHHHHH-HcCcCCCCeEEEe-
Q 018973          135 RLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGD--------ESEKTKELCE-REKIKKVPHFSFY-  202 (348)
Q Consensus       135 ~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d--------~~~~~~~l~~-~~~V~~~Pt~~~~-  202 (348)
                      ++.++++|||.|||+||++|+. .|.|++|.++|.  ++.++.+.++        ..++..++++ +|++. +|.+.-. 
T Consensus        21 s~~~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~~-Fpv~~k~d   98 (183)
T PRK10606         21 EKYAGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGVT-FPMFSKIE   98 (183)
T ss_pred             HHhCCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccCCC-ceeEEEEc
Confidence            3447899999999999999975 889999999996  4899999874        2344567776 68874 5654322 


Q ss_pred             ecccc
Q 018973          203 KSMEK  207 (348)
Q Consensus       203 ~~g~~  207 (348)
                      .+|+.
T Consensus        99 vnG~~  103 (183)
T PRK10606         99 VNGEG  103 (183)
T ss_pred             cCCCC
Confidence            35544

>KOG3414 consensus Component of the U4/U6

Probab=98.31  E-value=9.6e-06  Score=64.40  Aligned_cols=85  Identities=19%  Similarity=0.298  Sum_probs=76.4

Q ss_pred             eEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCeEE
Q 018973          122 KKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPHFS  200 (348)
Q Consensus       122 ~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~  200 (348)
                      -..+|..+.++++.....++||+.|...|-+.|..+...|.++++...+ +.++-+|+|+   .+++.+-|++...||++
T Consensus         6 p~L~s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~Iylvdide---V~~~~~~~~l~~p~tvm   82 (142)
T KOG3414|consen    6 PTLHSGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDE---VPDFVKMYELYDPPTVM   82 (142)
T ss_pred             cccccHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecch---hhhhhhhhcccCCceEE
Confidence            3567889999999888899999999999999999999999999999888 8999999998   67799999999999999


Q ss_pred             Eeecccccc
Q 018973          201 FYKSMEKIH  209 (348)
Q Consensus       201 ~~~~g~~v~  209 (348)
                      ||-+++-..
T Consensus        83 fFfn~kHmk   91 (142)
T KOG3414|consen   83 FFFNNKHMK   91 (142)
T ss_pred             EEEcCceEE
Confidence            888776554

U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=98.30  E-value=4.9e-06  Score=70.11  Aligned_cols=84  Identities=13%  Similarity=0.082  Sum_probs=60.8

Q ss_pred             CCcEEEEEEeCC-CChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchhHHH------------------HHHhCCCCcc
Q 018973          252 DQKLIVLDVGLK-HCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDSCMQ------------------FLRDMNVVEV  311 (348)
Q Consensus       252 ~~k~vvV~F~a~-wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~~~~------------------l~~~~~V~~~  311 (348)
                      .+++++|+||+. ||+.|....+.+.++.+++++ ++.++.|+.+..+..++                  +++.|++...
T Consensus        29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~  108 (154)
T PRK09437         29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGE  108 (154)
T ss_pred             CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcc
Confidence            468899999976 677899999999999888853 48888888875444333                  4445666543


Q ss_pred             ------------ce-EEEEeCCeEEEEEeCC-ChHHHH
Q 018973          312 ------------PT-FLFIRDGQIRGRYVGS-GKGELI  335 (348)
Q Consensus       312 ------------PT-l~~~~~G~~v~~~~G~-~~~~L~  335 (348)
                                  |+ +++.++|+++..+.|. ..+.+.
T Consensus       109 ~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~~~  146 (154)
T PRK09437        109 KKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNHHD  146 (154)
T ss_pred             cccccccccCcceEEEEECCCCEEEEEEcCCCcchhHH
Confidence                        54 5555799999999998 444433

>PF13728 TraF: F plasmid transfer operon protein

Probab=98.30  E-value=8.4e-06  Score=72.77  Aligned_cols=94  Identities=14%  Similarity=0.154  Sum_probs=67.9

Q ss_pred             hHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCc--------hhHHHHHHhCCCCccc
Q 018973          241 DVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN--------DSCMQFLRDMNVVEVP  312 (348)
Q Consensus       241 ~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~--------~~~~~l~~~~~V~~~P  312 (348)
                      .-++.++..  .++.-+++||.+.|+.|+.+.|.+..++++++  +.+..|++|..        .....++++|+|..+|
T Consensus       110 ~~~~~l~~l--a~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg--~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~P  185 (215)
T PF13728_consen  110 KRDKALKQL--AQKYGLFFFYRSDCPYCQQQAPILQQFADKYG--FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTP  185 (215)
T ss_pred             HHHHHHHHH--hhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC--CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCC
Confidence            334445544  47888999999999999999999999999994  55555555521        0013489999999999


Q ss_pred             eEEEE-eCC-eEEEEEeCC-ChHHHHHHH
Q 018973          313 TFLFI-RDG-QIRGRYVGS-GKGELIGEI  338 (348)
Q Consensus       313 Tl~~~-~~G-~~v~~~~G~-~~~~L~~~l  338 (348)
                      ++++. .++ +..-.-.|. +.++|.+-|
T Consensus       186 al~Lv~~~~~~~~pv~~G~~s~~~L~~ri  214 (215)
T PF13728_consen  186 ALFLVNPNTKKWYPVSQGFMSLDELEDRI  214 (215)
T ss_pred             EEEEEECCCCeEEEEeeecCCHHHHHHhh
Confidence            87666 455 444444687 888887654

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=98.29  E-value=7.3e-06  Score=61.99  Aligned_cols=81  Identities=20%  Similarity=0.285  Sum_probs=60.2

Q ss_pred             EEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch-hHHHHHHhCC--CCccceEEEEeCCeEEEEEeCCChH
Q 018973          256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND-SCMQFLRDMN--VVEVPTFLFIRDGQIRGRYVGSGKG  332 (348)
Q Consensus       256 vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~-~~~~l~~~~~--V~~~PTl~~~~~G~~v~~~~G~~~~  332 (348)
                      -++.|+.+||++|.+....|.++..++ ..+.+..+|+++.. +..++.+..+  +..+|++++  +|+.++     ..+
T Consensus         2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~-~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g~~ig-----g~~   73 (85)
T PRK11200          2 FVVIFGRPGCPYCVRAKELAEKLSEER-DDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQKHIG-----GCT   73 (85)
T ss_pred             EEEEEeCCCChhHHHHHHHHHhhcccc-cCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CCEEEc-----CHH
Confidence            367899999999999999999998775 35888899988653 2233555444  578999764  887653     447


Q ss_pred             HHHHHHHHHhCC
Q 018973          333 ELIGEILRYQGV  344 (348)
Q Consensus       333 ~L~~~l~~~~~~  344 (348)
                      +|.+++++++|+
T Consensus        74 ~~~~~~~~~~~~   85 (85)
T PRK11200         74 DFEAYVKENLGL   85 (85)
T ss_pred             HHHHHHHHhccC
Confidence            788888887763

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=98.27  E-value=3.2e-06  Score=70.33  Aligned_cols=55  Identities=16%  Similarity=0.118  Sum_probs=42.8

Q ss_pred             CCEEEEEEeCCCCHHHHhhhhHHHHHHHHc--CCcEEEEEeCCCchhHHHHHHHcCc
Q 018973          139 NKLVVVEFAASRSLDSSKIYPFMVDLSRQC--NDVEFILVMGDESEKTKELCEREKI  193 (348)
Q Consensus       139 ~k~vvV~F~a~wC~~C~~~~p~l~~la~~~--~~v~f~~vd~d~~~~~~~l~~~~~V  193 (348)
                      ++.||+.|+++||++|+...|.|.++.+++  .++.++.|..|+.+....+.+++++
T Consensus        24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~   80 (149)
T cd02970          24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFL   80 (149)
T ss_pred             CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCC
Confidence            445555566999999999999999999998  4599999998875544455666655

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=98.27  E-value=2.4e-06  Score=70.76  Aligned_cols=55  Identities=20%  Similarity=0.214  Sum_probs=44.1

Q ss_pred             CCCEEEEEEeCCCCHH-HHhhhhHHHHHHHHcCC-----cEEEEEeCCCc----hhHHHHHHHcC
Q 018973          138 KNKLVVVEFAASRSLD-SSKIYPFMVDLSRQCND-----VEFILVMGDES----EKTKELCEREK  192 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~-C~~~~p~l~~la~~~~~-----v~f~~vd~d~~----~~~~~l~~~~~  192 (348)
                      +++++||.||++||++ |....+.|.++.+++.+     +.++.|..|..    +..++.+++++
T Consensus        21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~~~~~   85 (142)
T cd02968          21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAYAKAFG   85 (142)
T ss_pred             CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHHHHHhC
Confidence            5799999999999998 99999999999998753     88888887642    33455666666

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>TIGR03137 AhpC peroxiredoxin

Probab=98.27  E-value=7.3e-06  Score=71.63  Aligned_cols=90  Identities=16%  Similarity=0.115  Sum_probs=65.3

Q ss_pred             CCcEEEEEEe-CCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchh----------------------HHHHHHhCC
Q 018973          252 DQKLIVLDVG-LKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDS----------------------CMQFLRDMN  307 (348)
Q Consensus       252 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~----------------------~~~l~~~~~  307 (348)
                      .+++++|+|| +.||+.|....+.|.++.+++.+ .+.++.|..+....                      ...+++.|+
T Consensus        30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g  109 (187)
T TIGR03137        30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG  109 (187)
T ss_pred             CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence            4789999999 99999999999999999888852 46777777654211                      124677788


Q ss_pred             CC------ccc-eEEEEeCCeEEEEEeCC-----ChHHHHHHHHHH
Q 018973          308 VV------EVP-TFLFIRDGQIRGRYVGS-----GKGELIGEILRY  341 (348)
Q Consensus       308 V~------~~P-Tl~~~~~G~~v~~~~G~-----~~~~L~~~l~~~  341 (348)
                      +.      ..| |+++.++|+++....+.     +.+++.+.|+++
T Consensus       110 v~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~~  155 (187)
T TIGR03137       110 VLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKAA  155 (187)
T ss_pred             CcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence            86      358 45666899999876432     566777766543

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=98.26  E-value=7.6e-06  Score=68.32  Aligned_cols=85  Identities=20%  Similarity=0.166  Sum_probs=60.8

Q ss_pred             cEEEEEEe-CCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchhH--------------------HHHHHhCCCC--
Q 018973          254 KLIVLDVG-LKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDSC--------------------MQFLRDMNVV--  309 (348)
Q Consensus       254 k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~~--------------------~~l~~~~~V~--  309 (348)
                      ++++|.|| ++||+.|....|.+.++.+++++ ++.++.|+.+..+..                    ..+++.|++.  
T Consensus        29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~~  108 (149)
T cd03018          29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFDE  108 (149)
T ss_pred             CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCccc
Confidence            77888887 99999999999999999999853 488888876642222                    2356667776  


Q ss_pred             --ccc--e-EEEEeCCeEEEEEeCC-----ChHHHHHHH
Q 018973          310 --EVP--T-FLFIRDGQIRGRYVGS-----GKGELIGEI  338 (348)
Q Consensus       310 --~~P--T-l~~~~~G~~v~~~~G~-----~~~~L~~~l  338 (348)
                        ++|  + +++.++|+++..+.|.     +..++.+.|
T Consensus       109 ~~~~~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~  147 (149)
T cd03018         109 DLGVAERAVFVIDRDGIIRYAWVSDDGEPRDLPDYDEAL  147 (149)
T ss_pred             cCCCccceEEEECCCCEEEEEEecCCcccccchhHHHHh
Confidence              333  4 5555799999988886     344555444

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=98.25  E-value=2.6e-06  Score=71.13  Aligned_cols=56  Identities=16%  Similarity=0.093  Sum_probs=44.6

Q ss_pred             CC-CEEEEEEe-CCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchhHHHHHHHcCc
Q 018973          138 KN-KLVVVEFA-ASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEKTKELCEREKI  193 (348)
Q Consensus       138 ~~-k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~~~~l~~~~~V  193 (348)
                      ++ ++++|.|| ++||++|....|.|.++.+++.  ++.++.|..|..+..++..+++++
T Consensus        26 ~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~   85 (149)
T cd03018          26 RGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGL   85 (149)
T ss_pred             cCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCC
Confidence            44 88888887 9999999999999999999885  589999998875445555556553

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>TIGR02180 GRX_euk Glutaredoxin

Probab=98.25  E-value=6.1e-06  Score=61.80  Aligned_cols=63  Identities=16%  Similarity=0.198  Sum_probs=46.1

Q ss_pred             EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch-hH-HHHHHhCCCCccceEEEEeCCeEE
Q 018973          257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND-SC-MQFLRDMNVVEVPTFLFIRDGQIR  323 (348)
Q Consensus       257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~-~~-~~l~~~~~V~~~PTl~~~~~G~~v  323 (348)
                      ++.|+++||++|+++.+.|.++.  ..+.+.++.+|.+++. +. ..+.+.+++.++|++++  +|+.+
T Consensus         1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~~i   65 (84)
T TIGR02180         1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI--NGKFI   65 (84)
T ss_pred             CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEE
Confidence            47899999999999999998875  3334677777776443 22 23666789999999854  77654

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=98.24  E-value=1.9e-05  Score=63.57  Aligned_cols=102  Identities=20%  Similarity=0.232  Sum_probs=79.7

Q ss_pred             eecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccc-
Q 018973          234 VQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVP-  312 (348)
Q Consensus       234 ~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~P-  312 (348)
                      ..+++.-+.++.+...  .++.+++-|+-+|-+.|.++...|.++++..++-..++.+|+++-++   +.+.|.+. -| 
T Consensus         3 ~~L~s~~~VDqAI~~e--~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpd---fn~~yel~-dP~   76 (133)
T PF02966_consen    3 PHLHSGWHVDQAILSE--EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPD---FNQMYELY-DPC   76 (133)
T ss_dssp             EEE-SHHHHHHHHHH---SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHC---CHHHTTS--SSE
T ss_pred             cccCccchHHHHHhcc--CceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchh---hhcccccC-CCe
Confidence            3466777888887765  68999999999999999999999999999998778999999999888   89999999 88 


Q ss_pred             eEEEEeCCeEEEE---------EeCC--ChHHHHHHHHHH
Q 018973          313 TFLFIRDGQIRGR---------YVGS--GKGELIGEILRY  341 (348)
Q Consensus       313 Tl~~~~~G~~v~~---------~~G~--~~~~L~~~l~~~  341 (348)
                      |+.||-+++-+.-         +.+.  +++++++.++..
T Consensus        77 tvmFF~rnkhm~vD~GtgnnnKin~~~~~kqe~iDiie~i  116 (133)
T PF02966_consen   77 TVMFFFRNKHMMVDFGTGNNNKINWAFEDKQEFIDIIETI  116 (133)
T ss_dssp             EEEEEETTEEEEEESSSSSSSSBCS--SCHHHHHHHHHHH
T ss_pred             EEEEEecCeEEEEEecCCCccEEEEEcCcHHHHHHHHHHH
Confidence            7877766665532         2233  578888877754

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.

>TIGR02180 GRX_euk Glutaredoxin

Probab=98.23  E-value=3e-06  Score=63.47  Aligned_cols=63  Identities=19%  Similarity=0.130  Sum_probs=46.5

Q ss_pred             EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCch-h-HHHHHHHcCcCCCCeEEEeeccccc
Q 018973          143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESE-K-TKELCEREKIKKVPHFSFYKSMEKI  208 (348)
Q Consensus       143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~-~-~~~l~~~~~V~~~Pt~~~~~~g~~v  208 (348)
                      |+.|+++||++|+.+.+.|+++.-. +.+.++.||.++.. + ...+.+.+|+..+|++.+  +|+.+
T Consensus         1 V~~f~~~~Cp~C~~~~~~L~~~~i~-~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~~i   65 (84)
T TIGR02180         1 VVVFSKSYCPYCKKAKEILAKLNVK-PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI--NGKFI   65 (84)
T ss_pred             CEEEECCCChhHHHHHHHHHHcCCC-CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEE
Confidence            5789999999999999999998622 23778888876432 1 234777789999999843  66544

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=98.22  E-value=3.8e-06  Score=69.24  Aligned_cols=54  Identities=24%  Similarity=0.178  Sum_probs=42.9

Q ss_pred             CCCEEEEEEe-CCCCHHHHhhhhHHHHHHHHc--CCcEEEEEeCCCchhHHHHHHHc
Q 018973          138 KNKLVVVEFA-ASRSLDSSKIYPFMVDLSRQC--NDVEFILVMGDESEKTKELCERE  191 (348)
Q Consensus       138 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~--~~v~f~~vd~d~~~~~~~l~~~~  191 (348)
                      ++++++|.|| +.||++|....|.|.++.+++  .++.|+.|..|..+......+++
T Consensus        21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~   77 (140)
T cd02971          21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKE   77 (140)
T ss_pred             CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcc
Confidence            6899999999 789999999999999999986  45899999987644333444444

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=98.20  E-value=6.8e-06  Score=67.97  Aligned_cols=44  Identities=18%  Similarity=0.369  Sum_probs=37.8

Q ss_pred             CCcEEEEEEeCCCChh-hhhhhhHHHHHHHHhCC----cEEEEEEECCC
Q 018973          252 DQKLIVLDVGLKHCGP-CVKVYPTVIKLSRQMAG----TVVFARMNGDE  295 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~-C~~~~p~l~~la~~~~~----~v~~~~vd~~~  295 (348)
                      .+++++|.||++||++ |....+.+.++.+++++    ++.++.|..+.
T Consensus        21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~   69 (142)
T cd02968          21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP   69 (142)
T ss_pred             CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence            3689999999999998 99999999999998864    38888887653

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=98.19  E-value=9.8e-06  Score=66.78  Aligned_cols=78  Identities=22%  Similarity=0.205  Sum_probs=59.1

Q ss_pred             CCcEEEEEEe-CCCChhhhhhhhHHHHHHHHhC-CcEEEEEEECCCchhHH-------------------HHHHhCCCCc
Q 018973          252 DQKLIVLDVG-LKHCGPCVKVYPTVIKLSRQMA-GTVVFARMNGDENDSCM-------------------QFLRDMNVVE  310 (348)
Q Consensus       252 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~~~~~~-------------------~l~~~~~V~~  310 (348)
                      .+++++|+|| +.||+.|....+.+.++.++++ ..+.++.|..+.....+                   .+.+.|++..
T Consensus        21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~  100 (140)
T cd02971          21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLI  100 (140)
T ss_pred             CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCcc
Confidence            3789999999 7899999999999999998884 34888888876433222                   2455567666


Q ss_pred             cc---------e-EEEEeCCeEEEEEeCC
Q 018973          311 VP---------T-FLFIRDGQIRGRYVGS  329 (348)
Q Consensus       311 ~P---------T-l~~~~~G~~v~~~~G~  329 (348)
                      .|         + +++.++|+++.++.|.
T Consensus       101 ~~~~~~~~~~p~~~lid~~g~i~~~~~~~  129 (140)
T cd02971         101 EKSAGGGLAARATFIIDPDGKIRYVEVEP  129 (140)
T ss_pred             ccccccCceeEEEEEECCCCcEEEEEecC
Confidence            55         4 4555789999999887

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=98.18  E-value=6.8e-06  Score=62.17  Aligned_cols=66  Identities=17%  Similarity=0.195  Sum_probs=51.4

Q ss_pred             EEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCch-hHHHHHHHcC--cCCCCeEEEeecccccc
Q 018973          142 VVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESE-KTKELCEREK--IKKVPHFSFYKSMEKIH  209 (348)
Q Consensus       142 vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~-~~~~l~~~~~--V~~~Pt~~~~~~g~~v~  209 (348)
                      -|+.|+.+||+.|++....|+++..++.++.+..+|+++.+ +..++.+..+  +..+|++.+  +|+.+.
T Consensus         2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g~~ig   70 (85)
T PRK11200          2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQKHIG   70 (85)
T ss_pred             EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CCEEEc
Confidence            37889999999999999999999998888999999988642 2234555554  589999764  676553

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=98.16  E-value=3.5e-05  Score=60.27  Aligned_cols=98  Identities=13%  Similarity=0.205  Sum_probs=70.0

Q ss_pred             ecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchh-HHHHHHhCCCCc-cc
Q 018973          235 QLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDS-CMQFLRDMNVVE-VP  312 (348)
Q Consensus       235 ~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~-~~~l~~~~~V~~-~P  312 (348)
                      .+.+.++++++++..  .+++++|+=.++.|+-.......|++......+.+.++.+|+-+..+ .-+++++|||.. -|
T Consensus         3 ~L~t~eql~~i~~~S--~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSP   80 (105)
T PF11009_consen    3 PLTTEEQLEEILEES--KEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESP   80 (105)
T ss_dssp             E--SHHHHHHHHHH-----SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SS
T ss_pred             ccCCHHHHHHHHHhc--ccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCC
Confidence            467889999999875  68999999999999999999999999988887669999999977653 235899999974 59


Q ss_pred             eEEEEeCCeEEEEEeCC--ChHHH
Q 018973          313 TFLFIRDGQIRGRYVGS--GKGEL  334 (348)
Q Consensus       313 Tl~~~~~G~~v~~~~G~--~~~~L  334 (348)
                      .++++++|+.+..-...  +.+.|
T Consensus        81 Q~ili~~g~~v~~aSH~~It~~~l  104 (105)
T PF11009_consen   81 QVILIKNGKVVWHASHWDITAEAL  104 (105)
T ss_dssp             EEEEEETTEEEEEEEGGG-SHHHH
T ss_pred             cEEEEECCEEEEECccccCCHHhc
Confidence            99999999999765543  55544

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.15  E-value=1.3e-06  Score=76.45  Aligned_cols=100  Identities=19%  Similarity=0.201  Sum_probs=83.8

Q ss_pred             eeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccc
Q 018973          233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVP  312 (348)
Q Consensus       233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~P  312 (348)
                      +..+...++|  ...    .++..+++||++||.+|.++...+..+++.. .++.|++++.++.++   +++.+.+..+|
T Consensus         3 v~~i~~~~~f--~~~----~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~~~e---is~~~~v~~vp   72 (227)
T KOG0911|consen    3 VQFIVFQEQF--LDQ----KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEEFPE---ISNLIAVEAVP   72 (227)
T ss_pred             ceeehhHHHH--HHh----ccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhhhhH---HHHHHHHhcCc
Confidence            3445556666  222    4789999999999999999999999999888 569999999999998   99999999999


Q ss_pred             eEEEEeCCeEEEEEeCCChHHHHHHHHHHh
Q 018973          313 TFLFIRDGQIRGRYVGSGKGELIGEILRYQ  342 (348)
Q Consensus       313 Tl~~~~~G~~v~~~~G~~~~~L~~~l~~~~  342 (348)
                      +++++..|+.+.++.|.++..+...+..+.
T Consensus        73 ~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~  102 (227)
T KOG0911|consen   73 YFVFFFLGEKVDRLSGADPPFLVSKVEKLA  102 (227)
T ss_pred             eeeeeecchhhhhhhccCcHHHHHHHHHhh
Confidence            999999999999999997666666666553

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=98.14  E-value=2.2e-05  Score=61.43  Aligned_cols=89  Identities=17%  Similarity=0.156  Sum_probs=66.1

Q ss_pred             eEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCc-hhHHHHHHHcCcC-CCCe
Q 018973          122 KKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDES-EKTKELCEREKIK-KVPH  198 (348)
Q Consensus       122 ~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~-~~~~~l~~~~~V~-~~Pt  198 (348)
                      .++.|.++|+++++++.+++++|+=.++.|+-.......|++.....++ +.++.+|+-+. +--..++++|||+ .-|.
T Consensus         2 ~~L~t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ   81 (105)
T PF11009_consen    2 KPLTTEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQ   81 (105)
T ss_dssp             -E--SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSE
T ss_pred             CccCCHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCc
Confidence            4678999999999988899999999999999999999999999999887 99999997663 2234689999998 5699


Q ss_pred             EEEeeccccccc
Q 018973          199 FSFYKSMEKIHE  210 (348)
Q Consensus       199 ~~~~~~g~~v~~  210 (348)
                      ++++++|+.+..
T Consensus        82 ~ili~~g~~v~~   93 (105)
T PF11009_consen   82 VILIKNGKVVWH   93 (105)
T ss_dssp             EEEEETTEEEEE
T ss_pred             EEEEECCEEEEE
Confidence            999999998853

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>KOG3425 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.14  E-value=6.8e-06  Score=64.80  Aligned_cols=80  Identities=23%  Similarity=0.301  Sum_probs=62.8

Q ss_pred             cCHHHHHHHHHhc-CCCEEEEEEeC--------CCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHH----HHHHH
Q 018973          125 HSIEEFDEALRLA-KNKLVVVEFAA--------SRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTK----ELCER  190 (348)
Q Consensus       125 ~s~~~f~~~l~~~-~~k~vvV~F~a--------~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~----~l~~~  190 (348)
                      .-.++|++.+++. +++-++|.|++        +||+.|.+.+|.+.+.-+..+. +.|+.|++.+-+..+    .+...
T Consensus        10 ~g~e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d   89 (128)
T KOG3425|consen   10 PGYESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKD   89 (128)
T ss_pred             chHHHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccC
Confidence            3468889888865 56779999997        7999999999999998887664 999999988744222    23445


Q ss_pred             cCc-CCCCeEEEeec
Q 018973          191 EKI-KKVPHFSFYKS  204 (348)
Q Consensus       191 ~~V-~~~Pt~~~~~~  204 (348)
                      .++ +++||++=|++
T Consensus        90 ~~~lt~vPTLlrw~~  104 (128)
T KOG3425|consen   90 PGILTAVPTLLRWKR  104 (128)
T ss_pred             CCceeecceeeEEcC
Confidence            566 89999998874

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=98.13  E-value=5.6e-06  Score=69.78  Aligned_cols=56  Identities=18%  Similarity=0.153  Sum_probs=45.9

Q ss_pred             CCCEEEEEEeCC-CCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchhHHHHHHHcCc
Q 018973          138 KNKLVVVEFAAS-RSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEKTKELCEREKI  193 (348)
Q Consensus       138 ~~k~vvV~F~a~-wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~~~~l~~~~~V  193 (348)
                      +++++||.||+. ||+.|....+.|.++.+++.  ++.++.|..|..++..+.++++++
T Consensus        29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~   87 (154)
T PRK09437         29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELL   87 (154)
T ss_pred             CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCC
Confidence            578999999986 67789999999999998874  499999998876666666777665

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=98.12  E-value=2.7e-05  Score=67.96  Aligned_cols=91  Identities=14%  Similarity=0.109  Sum_probs=67.8

Q ss_pred             CCcEEEEEEe-CCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchh----------------------HHHHHHhCC
Q 018973          252 DQKLIVLDVG-LKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDS----------------------CMQFLRDMN  307 (348)
Q Consensus       252 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~----------------------~~~l~~~~~  307 (348)
                      .+++++|+|| +.||+.|....+.|.++.+++.+ ++.++.|+.|....                      ...+++.||
T Consensus        30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg  109 (187)
T PRK10382         30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD  109 (187)
T ss_pred             CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence            3678999999 99999999999999999999853 47788887765322                      124677788


Q ss_pred             C----Ccc--ce-EEEEeCCeEEEEEeC-----CChHHHHHHHHHHh
Q 018973          308 V----VEV--PT-FLFIRDGQIRGRYVG-----SGKGELIGEILRYQ  342 (348)
Q Consensus       308 V----~~~--PT-l~~~~~G~~v~~~~G-----~~~~~L~~~l~~~~  342 (348)
                      +    .++  |+ +++.++|+++.....     .+.+++.+.|+.+.
T Consensus       110 v~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~alq  156 (187)
T PRK10382        110 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQ  156 (187)
T ss_pred             CCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhhh
Confidence            8    356  84 566679999877543     26788888886654

>PF13728 TraF: F plasmid transfer operon protein

Probab=98.11  E-value=1.7e-05  Score=70.88  Aligned_cols=77  Identities=17%  Similarity=0.161  Sum_probs=60.7

Q ss_pred             HHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCc--------hhHHHHHHHcCcCCCCeE
Q 018973          128 EEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDES--------EKTKELCEREKIKKVPHF  199 (348)
Q Consensus       128 ~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~--------~~~~~l~~~~~V~~~Pt~  199 (348)
                      ++-+..|++..++.-++.||.+.|+.|+.+.|.+..++++| ++.++.|++|..        -....+++++||..+|++
T Consensus       109 ~~~~~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y-g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal  187 (215)
T PF13728_consen  109 QKRDKALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY-GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPAL  187 (215)
T ss_pred             HHHHHHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh-CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEE
Confidence            34445566666889999999999999999999999999999 666666666631        013568999999999998


Q ss_pred             EEeecc
Q 018973          200 SFYKSM  205 (348)
Q Consensus       200 ~~~~~g  205 (348)
                      ++...+
T Consensus       188 ~Lv~~~  193 (215)
T PF13728_consen  188 FLVNPN  193 (215)
T ss_pred             EEEECC
Confidence            777543

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=98.09  E-value=4.3e-05  Score=69.62  Aligned_cols=97  Identities=15%  Similarity=0.143  Sum_probs=69.9

Q ss_pred             HHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCc--h------hHHHHHHhCCCCccce
Q 018973          242 VEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN--D------SCMQFLRDMNVVEVPT  313 (348)
Q Consensus       242 ~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~--~------~~~~l~~~~~V~~~PT  313 (348)
                      -++.++..  .++.-+++||...|+.|.++.|.+..++++|+  +.+..|++|..  +      ....+++++||..+|+
T Consensus       141 ~~~~i~~l--a~~~gL~fFy~~~C~~C~~~apil~~fa~~yg--i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pa  216 (256)
T TIGR02739       141 KEKAIQQL--SQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG--ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPA  216 (256)
T ss_pred             HHHHHHHH--HhceeEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCce
Confidence            33444443  46788999999999999999999999999995  55555555433  1      1134889999999997


Q ss_pred             EEEE-eC-CeEEEEEeCC-ChHHHHHHHHHHh
Q 018973          314 FLFI-RD-GQIRGRYVGS-GKGELIGEILRYQ  342 (348)
Q Consensus       314 l~~~-~~-G~~v~~~~G~-~~~~L~~~l~~~~  342 (348)
                      +++. .+ ++..---.|. +.++|.+.|....
T Consensus       217 l~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~  248 (256)
T TIGR02739       217 LYLVNPKSQKMSPLAYGFISQDELKERILNVL  248 (256)
T ss_pred             EEEEECCCCcEEEEeeccCCHHHHHHHHHHHH
Confidence            6555 55 4443344687 9999988887654

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=98.04  E-value=1.1e-05  Score=69.59  Aligned_cols=71  Identities=17%  Similarity=0.098  Sum_probs=50.6

Q ss_pred             CCCEEEEEEe-CCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchhHHHHHHHcC----cCCCCeEEEeeccccc
Q 018973          138 KNKLVVVEFA-ASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEKTKELCEREK----IKKVPHFSFYKSMEKI  208 (348)
Q Consensus       138 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~~~~l~~~~~----V~~~Pt~~~~~~g~~v  208 (348)
                      +++++||.|| ++||++|....+.|.++++++.  ++.++.|..|..+....+.+..+    ...+|.-++......+
T Consensus        28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~  105 (173)
T cd03015          28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKI  105 (173)
T ss_pred             CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhH
Confidence            5789999999 8999999999999999999985  48899998886433333444433    3455554444433333

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>PRK13190 putative peroxiredoxin; Provisional

Probab=98.02  E-value=4.4e-05  Score=67.55  Aligned_cols=90  Identities=16%  Similarity=0.154  Sum_probs=64.2

Q ss_pred             CcEEEE-EEeCCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchh------------------------HHHHHHhC
Q 018973          253 QKLIVL-DVGLKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDS------------------------CMQFLRDM  306 (348)
Q Consensus       253 ~k~vvV-~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~------------------------~~~l~~~~  306 (348)
                      ++.++| .||++||+.|....+.|.++.+++++ ++.++.|+++....                        ...+++.|
T Consensus        27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~y  106 (202)
T PRK13190         27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREY  106 (202)
T ss_pred             CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHc
Confidence            555555 68999999999999999999888853 47777777663211                        12466677


Q ss_pred             CCC------ccceE-EEEeCCeEEEEE----e-CCChHHHHHHHHHHh
Q 018973          307 NVV------EVPTF-LFIRDGQIRGRY----V-GSGKGELIGEILRYQ  342 (348)
Q Consensus       307 ~V~------~~PTl-~~~~~G~~v~~~----~-G~~~~~L~~~l~~~~  342 (348)
                      |+.      .+|+. ++.++|+++...    . |.+.+++.+.|+.+.
T Consensus       107 gv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~  154 (202)
T PRK13190        107 NLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQ  154 (202)
T ss_pred             CCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence            874      47965 444799888665    2 338888888887764

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=98.01  E-value=4.4e-05  Score=55.02  Aligned_cols=71  Identities=14%  Similarity=0.159  Sum_probs=49.3

Q ss_pred             EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhH-HHHHHhCCCCccceEEEEeCCeEEEEEeCCChHHHH
Q 018973          257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSC-MQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELI  335 (348)
Q Consensus       257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~-~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~~~~~L~  335 (348)
                      ++.|+.+||++|..+...+.+.      .+.+..+|++..... .++.+..++..+|++++  +|   ..+.|.+.+.|.
T Consensus         2 v~l~~~~~c~~c~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~---~~i~g~~~~~l~   70 (73)
T cd02976           2 VTVYTKPDCPYCKATKRFLDER------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GD---EHLSGFRPDKLR   70 (73)
T ss_pred             EEEEeCCCChhHHHHHHHHHHC------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CC---EEEecCCHHHHH
Confidence            5788999999999987766652      366777888765542 23444447899999976  55   345677777777


Q ss_pred             HHH
Q 018973          336 GEI  338 (348)
Q Consensus       336 ~~l  338 (348)
                      ++|
T Consensus        71 ~~~   73 (73)
T cd02976          71 ALL   73 (73)
T ss_pred             hhC
Confidence            653

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=98.00  E-value=3.7e-05  Score=53.95  Aligned_cols=57  Identities=23%  Similarity=0.278  Sum_probs=44.4

Q ss_pred             EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCch-hHHHHHHHcCcCCCCeEEEeeccc
Q 018973          143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESE-KTKELCEREKIKKVPHFSFYKSME  206 (348)
Q Consensus       143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~-~~~~l~~~~~V~~~Pt~~~~~~g~  206 (348)
                      |+.|..+||++|++....|++     .++.|-.+|+++.+ ...++.+..|...+|++.+  +|+
T Consensus         1 V~vy~~~~C~~C~~~~~~L~~-----~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~   58 (60)
T PF00462_consen    1 VVVYTKPGCPYCKKAKEFLDE-----KGIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGK   58 (60)
T ss_dssp             EEEEESTTSHHHHHHHHHHHH-----TTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTE
T ss_pred             cEEEEcCCCcCHHHHHHHHHH-----cCCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCE
Confidence            578999999999999988855     45888888888764 3344555559999999876  554

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=98.00  E-value=4.5e-05  Score=57.84  Aligned_cols=80  Identities=18%  Similarity=0.203  Sum_probs=56.6

Q ss_pred             EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch-hHHHHHHhCCC--CccceEEEEeCCeEEEEEeCCChHH
Q 018973          257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND-SCMQFLRDMNV--VEVPTFLFIRDGQIRGRYVGSGKGE  333 (348)
Q Consensus       257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~-~~~~l~~~~~V--~~~PTl~~~~~G~~v~~~~G~~~~~  333 (348)
                      ++.|..+||++|.++...|.++..++. .+.+..+|++... ..+++.+..+-  ..+|++++  +|+.+   .|  .++
T Consensus         2 V~vys~~~Cp~C~~ak~~L~~~~~~~~-~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~i---gG--~~d   73 (86)
T TIGR02183         2 VVIFGRPGCPYCVRAKQLAEKLAIERA-DFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKHV---GG--CTD   73 (86)
T ss_pred             EEEEeCCCCccHHHHHHHHHHhCcccC-CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEEe---cC--HHH
Confidence            678899999999999888888765542 3678888887533 22346666664  78999854  77653   23  377


Q ss_pred             HHHHHHHHhCC
Q 018973          334 LIGEILRYQGV  344 (348)
Q Consensus       334 L~~~l~~~~~~  344 (348)
                      |.+++.+..+.
T Consensus        74 l~~~~~~~~~~   84 (86)
T TIGR02183        74 FEQLVKENFDI   84 (86)
T ss_pred             HHHHHHhcccc
Confidence            88888877665

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>PRK15000 peroxidase; Provisional

Probab=97.99  E-value=6.3e-05  Score=66.43  Aligned_cols=89  Identities=15%  Similarity=0.076  Sum_probs=66.8

Q ss_pred             CcEEEEEEeC-CCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchh-------------------------HHHHHHh
Q 018973          253 QKLIVLDVGL-KHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDS-------------------------CMQFLRD  305 (348)
Q Consensus       253 ~k~vvV~F~a-~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~-------------------------~~~l~~~  305 (348)
                      +++++|+||. .||+.|....+.|.++.+++.+ ++.++.|.+|....                         ..++++.
T Consensus        34 gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~  113 (200)
T PRK15000         34 GKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQKA  113 (200)
T ss_pred             CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHHH
Confidence            6899999998 5999999999999999999863 47788888774321                         1135666


Q ss_pred             CCCC------ccce-EEEEeCCeEEEEEeCC-----ChHHHHHHHHHH
Q 018973          306 MNVV------EVPT-FLFIRDGQIRGRYVGS-----GKGELIGEILRY  341 (348)
Q Consensus       306 ~~V~------~~PT-l~~~~~G~~v~~~~G~-----~~~~L~~~l~~~  341 (348)
                      |++.      .+|+ |++.++|+++..+.|.     +.+++.+.|+.+
T Consensus       114 ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al  161 (200)
T PRK15000        114 YGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDAL  161 (200)
T ss_pred             cCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            8876      6895 5555799999877653     577777777654

>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=97.95  E-value=0.00022  Score=57.56  Aligned_cols=84  Identities=15%  Similarity=0.237  Sum_probs=68.8

Q ss_pred             eEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCe-E
Q 018973          122 KKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPH-F  199 (348)
Q Consensus       122 ~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt-~  199 (348)
                      ...++..+.++++.+..+++|++.|..+|-+.|.++...|.+++++.++ ..++.||.++   .+++.+.|.+. -|. +
T Consensus         3 ~~L~s~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~---Vpdfn~~yel~-dP~tv   78 (133)
T PF02966_consen    3 PHLHSGWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDE---VPDFNQMYELY-DPCTV   78 (133)
T ss_dssp             EEE-SHHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTT---THCCHHHTTS--SSEEE
T ss_pred             cccCccchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEccc---chhhhcccccC-CCeEE
Confidence            4567889999999888899999999999999999999999999999888 8999999999   45588999999 785 6


Q ss_pred             EEeecccccc
Q 018973          200 SFYKSMEKIH  209 (348)
Q Consensus       200 ~~~~~g~~v~  209 (348)
                      +||-+++.+.
T Consensus        79 mFF~rnkhm~   88 (133)
T PF02966_consen   79 MFFFRNKHMM   88 (133)
T ss_dssp             EEEETTEEEE
T ss_pred             EEEecCeEEE
Confidence            6665555543

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.

>TIGR03137 AhpC peroxiredoxin

Probab=97.95  E-value=2.1e-05  Score=68.74  Aligned_cols=52  Identities=21%  Similarity=0.095  Sum_probs=42.6

Q ss_pred             CCCEEEEEEe-CCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchhHHHHHH
Q 018973          138 KNKLVVVEFA-ASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEKTKELCE  189 (348)
Q Consensus       138 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~~~~l~~  189 (348)
                      +++++||.|| ++||++|....|.|.++.+++.  ++.++.|..|..+.....++
T Consensus        30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~   84 (187)
T TIGR03137        30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHD   84 (187)
T ss_pred             CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHh
Confidence            6889999999 9999999999999999998874  58899999887443333333

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=97.94  E-value=5.2e-05  Score=53.18  Aligned_cols=59  Identities=19%  Similarity=0.290  Sum_probs=44.5

Q ss_pred             EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHH-HHHHhCCCCccceEEEEeCCeEE
Q 018973          257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCM-QFLRDMNVVEVPTFLFIRDGQIR  323 (348)
Q Consensus       257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~-~l~~~~~V~~~PTl~~~~~G~~v  323 (348)
                      ++.|+.++|++|++....|.+    .  ++.|-.+|+++.++.+ ++.+..+..++|++++  +|+.+
T Consensus         1 V~vy~~~~C~~C~~~~~~L~~----~--~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~I   60 (60)
T PF00462_consen    1 VVVYTKPGCPYCKKAKEFLDE----K--GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKFI   60 (60)
T ss_dssp             EEEEESTTSHHHHHHHHHHHH----T--TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEEE
T ss_pred             cEEEEcCCCcCHHHHHHHHHH----c--CCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEEC
Confidence            578999999999998777643    2  4888889998875433 3444459999999887  77653

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=97.92  E-value=3.2e-05  Score=55.79  Aligned_cols=54  Identities=19%  Similarity=0.220  Sum_probs=40.1

Q ss_pred             EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhH-HHHHHHcCcCCCCeEEE
Q 018973          143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKT-KELCEREKIKKVPHFSF  201 (348)
Q Consensus       143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~-~~l~~~~~V~~~Pt~~~  201 (348)
                      ++.|+++||++|+++...|++     .++.+..+|++...+. .++.+..++..+|++++
T Consensus         2 v~l~~~~~c~~c~~~~~~l~~-----~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~   56 (73)
T cd02976           2 VTVYTKPDCPYCKATKRFLDE-----RGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI   56 (73)
T ss_pred             EEEEeCCCChhHHHHHHHHHH-----CCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE
Confidence            578999999999999888776     3577778888764322 23444447899999976

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=97.91  E-value=0.00013  Score=66.22  Aligned_cols=91  Identities=11%  Similarity=0.078  Sum_probs=66.8

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchh------HHHHHHhCCCCccceEEEE-eC-CeEE
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDS------CMQFLRDMNVVEVPTFLFI-RD-GQIR  323 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~------~~~l~~~~~V~~~PTl~~~-~~-G~~v  323 (348)
                      .++.-+++||...|+.|.++.|.++.++++++=.+..+.+|..-.+.      ....+++++|..+|++++. .+ |+..
T Consensus       142 a~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~  221 (248)
T PRK13703        142 AEHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVR  221 (248)
T ss_pred             HhcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEE
Confidence            45688999999999999999999999999996445555555421111      1236789999999976655 44 4554


Q ss_pred             EEEeCC-ChHHHHHHHHHHh
Q 018973          324 GRYVGS-GKGELIGEILRYQ  342 (348)
Q Consensus       324 ~~~~G~-~~~~L~~~l~~~~  342 (348)
                      ---.|. +.++|.+.|....
T Consensus       222 pv~~G~iS~deL~~Ri~~v~  241 (248)
T PRK13703        222 PLSYGFITQDDLAKRFLNVS  241 (248)
T ss_pred             EEeeccCCHHHHHHHHHHHH
Confidence            455688 9999998887654

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=97.90  E-value=4.3e-05  Score=56.96  Aligned_cols=64  Identities=14%  Similarity=0.117  Sum_probs=49.4

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeeccccc
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKI  208 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~~v  208 (348)
                      .++.-|+.|+.+||+.|++....|++     .++.|..+|+++.++..++.+..|...+|.+.+  +|+.+
T Consensus         5 ~~~~~V~ly~~~~Cp~C~~ak~~L~~-----~gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~~i   68 (79)
T TIGR02190         5 RKPESVVVFTKPGCPFCAKAKATLKE-----KGYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGKLI   68 (79)
T ss_pred             CCCCCEEEEECCCCHhHHHHHHHHHH-----cCCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCEEE
Confidence            34555788999999999999988875     357777888887655566777789999999854  66554

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

Probab=97.88  E-value=8.1e-05  Score=59.81  Aligned_cols=81  Identities=14%  Similarity=0.201  Sum_probs=59.8

Q ss_pred             HHHHHHhc--CCCEEEEEEeCC----CCHHHHhhh--hHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEE
Q 018973          130 FDEALRLA--KNKLVVVEFAAS----RSLDSSKIY--PFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSF  201 (348)
Q Consensus       130 f~~~l~~~--~~k~vvV~F~a~----wC~~C~~~~--p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~  201 (348)
                      |++++..+  ..|+++|+++++    ||..|+...  |.+.++-++  ++.+...|++..+ ..+++..++++.+|++.+
T Consensus         6 ~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~--~fv~w~~dv~~~e-g~~la~~l~~~~~P~~~~   82 (116)
T cd02991           6 YSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINT--RMLFWACSVAKPE-GYRVSQALRERTYPFLAM   82 (116)
T ss_pred             HHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHc--CEEEEEEecCChH-HHHHHHHhCCCCCCEEEE
Confidence            44444433  489999999999    999998764  555555543  4888999988755 578999999999999888


Q ss_pred             ee--c--ccccccccc
Q 018973          202 YK--S--MEKIHEEEG  213 (348)
Q Consensus       202 ~~--~--g~~v~~~~G  213 (348)
                      +-  +  .+.+.++.|
T Consensus        83 l~~~~~~~~vv~~i~G   98 (116)
T cd02991          83 IMLKDNRMTIVGRLEG   98 (116)
T ss_pred             EEecCCceEEEEEEeC
Confidence            72  2  334566666

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=97.87  E-value=0.00014  Score=64.47  Aligned_cols=88  Identities=15%  Similarity=0.140  Sum_probs=64.3

Q ss_pred             EEEEEEeCCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchh------------------------HHHHHHhCCCC
Q 018973          255 LIVLDVGLKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDS------------------------CMQFLRDMNVV  309 (348)
Q Consensus       255 ~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~------------------------~~~l~~~~~V~  309 (348)
                      .+++.||++||+.|....+.|.++.+++++ ++.++.|+++....                        ...+++.||+.
T Consensus        28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~  107 (203)
T cd03016          28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMI  107 (203)
T ss_pred             EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCc
Confidence            456689999999999999999999999853 37888887764221                        12467778875


Q ss_pred             ----ccc-----eEEEEeCCeEEEEEeC-----CChHHHHHHHHHHh
Q 018973          310 ----EVP-----TFLFIRDGQIRGRYVG-----SGKGELIGEILRYQ  342 (348)
Q Consensus       310 ----~~P-----Tl~~~~~G~~v~~~~G-----~~~~~L~~~l~~~~  342 (348)
                          +.|     +|++.++|+++..+.+     .+.+++.+.|+++.
T Consensus       108 ~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~lq  154 (203)
T cd03016         108 DPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDALQ  154 (203)
T ss_pred             cccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence                233     4666689999887754     36778888887653

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=97.86  E-value=7.9e-05  Score=55.10  Aligned_cols=57  Identities=9%  Similarity=0.202  Sum_probs=45.0

Q ss_pred             EEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeeccccc
Q 018973          145 EFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKI  208 (348)
Q Consensus       145 ~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~~v  208 (348)
                      .+++++|+.|..+...+++++.+++ +.+-.+|..+   ..++ .+|||.++|++++  ||+.+
T Consensus         4 ~v~~~~C~~C~~~~~~~~~~~~~~~-i~~ei~~~~~---~~~~-~~ygv~~vPalvI--ng~~~   60 (76)
T PF13192_consen    4 KVFSPGCPYCPELVQLLKEAAEELG-IEVEIIDIED---FEEI-EKYGVMSVPALVI--NGKVV   60 (76)
T ss_dssp             EEECSSCTTHHHHHHHHHHHHHHTT-EEEEEEETTT---HHHH-HHTT-SSSSEEEE--TTEEE
T ss_pred             EEeCCCCCCcHHHHHHHHHHHHhcC-CeEEEEEccC---HHHH-HHcCCCCCCEEEE--CCEEE
Confidence            3467889999999999999999995 7777777755   4556 9999999999966  56543

...

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=97.84  E-value=0.00013  Score=54.34  Aligned_cols=63  Identities=14%  Similarity=0.172  Sum_probs=47.4

Q ss_pred             CcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEE
Q 018973          253 QKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIR  323 (348)
Q Consensus       253 ~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v  323 (348)
                      ++.-++.|+.+||++|++....|.+    +  ++.|..+|+++.++..++.+..+...+|.+++  +|+.+
T Consensus         6 ~~~~V~ly~~~~Cp~C~~ak~~L~~----~--gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~~i   68 (79)
T TIGR02190         6 KPESVVVFTKPGCPFCAKAKATLKE----K--GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGKLI   68 (79)
T ss_pred             CCCCEEEEECCCCHhHHHHHHHHHH----c--CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCEEE
Confidence            3445778999999999999777764    2  37777888887765556777778999999864  77654

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]

Probab=97.83  E-value=5.2e-05  Score=65.79  Aligned_cols=109  Identities=18%  Similarity=0.318  Sum_probs=88.4

Q ss_pred             CCCccceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhC
Q 018973          227 GDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDM  306 (348)
Q Consensus       227 ~~~~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~  306 (348)
                      +.....++++.+.++|-+.+... .+...++|.+|-+.-.-|..+...+.-|+.+|+ .++|+++-...-.    ..++|
T Consensus       134 gp~~~~V~El~~gkqfld~idke-~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP-~vKFckikss~~g----as~~F  207 (273)
T KOG3171|consen  134 GPRYGFVYELETGKQFLDTIDKE-LKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYP-IVKFCKIKSSNTG----ASDRF  207 (273)
T ss_pred             CCccceEEEeccchhHHHHHhcc-cceEEEEEEEecCCCchHHHHhhhHHHhhccCC-ceeEEEeeecccc----chhhh
Confidence            44556789999999999888753 245678999999999999999999999999995 5999999876544    57789


Q ss_pred             CCCccceEEEEeCCeEEEEEeCC--------ChHHHHHHHHHH
Q 018973          307 NVVEVPTFLFIRDGQIRGRYVGS--------GKGELIGEILRY  341 (348)
Q Consensus       307 ~V~~~PTl~~~~~G~~v~~~~G~--------~~~~L~~~l~~~  341 (348)
                      ....+||+++|++|+.++.++..        ...+|..||+.+
T Consensus       208 ~~n~lP~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~  250 (273)
T KOG3171|consen  208 SLNVLPTLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEY  250 (273)
T ss_pred             cccCCceEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence            99999999999999999766532        355677777664

>PRK10329 glutaredoxin-like protein; Provisional

Probab=97.82  E-value=0.00021  Score=53.53  Aligned_cols=75  Identities=12%  Similarity=0.101  Sum_probs=57.5

Q ss_pred             EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCCChHHHHH
Q 018973          257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIG  336 (348)
Q Consensus       257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~~~~~L~~  336 (348)
                      +..|..+||++|......|.+      ..+.|-.+|+++.++..+..+..+...+|++++  +|.   ...|.+.++|.+
T Consensus         3 v~lYt~~~Cp~C~~ak~~L~~------~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~---~~~Gf~~~~l~~   71 (81)
T PRK10329          3 ITIYTRNDCVQCHATKRAMES------RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDL---SWSGFRPDMINR   71 (81)
T ss_pred             EEEEeCCCCHhHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCE---EEecCCHHHHHH
Confidence            567889999999998777754      248888999998776555566678889999865  443   346889999998


Q ss_pred             HHHHHh
Q 018973          337 EILRYQ  342 (348)
Q Consensus       337 ~l~~~~  342 (348)
                      .+..+.
T Consensus        72 ~~~~~~   77 (81)
T PRK10329         72 LHPAPH   77 (81)
T ss_pred             HHHhhh
Confidence            887654

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=8.3e-05  Score=61.57  Aligned_cols=80  Identities=18%  Similarity=0.253  Sum_probs=59.2

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHH---HHHHc-CCcEEEEEeCCCc-------------hhHHHHHHHcCcCCCCeEE
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVD---LSRQC-NDVEFILVMGDES-------------EKTKELCEREKIKKVPHFS  200 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~---la~~~-~~v~f~~vd~d~~-------------~~~~~l~~~~~V~~~Pt~~  200 (348)
                      .++..++.|-++.|..|.++...+..   +.+-. +++.++.++....             ...++|++.|+|+++|||+
T Consensus        41 ~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtfv  120 (182)
T COG2143          41 NDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTFV  120 (182)
T ss_pred             cCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceEE
Confidence            48999999999999999999866532   22222 2266666665432             2346899999999999999


Q ss_pred             Eee-ccccccccccCCCC
Q 018973          201 FYK-SMEKIHEEEGIGPD  217 (348)
Q Consensus       201 ~~~-~g~~v~~~~G~~~~  217 (348)
                      ||+ +|+.+.+.-|.-+.
T Consensus       121 Ffdk~Gk~Il~lPGY~pp  138 (182)
T COG2143         121 FFDKTGKTILELPGYMPP  138 (182)
T ss_pred             EEcCCCCEEEecCCCCCH
Confidence            996 68999888886543

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins

Probab=97.78  E-value=0.00015  Score=61.34  Aligned_cols=80  Identities=13%  Similarity=0.063  Sum_probs=48.7

Q ss_pred             CHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhh-HH--HHHHHHcC-CcEEEEEeCCCchhHHHHHHHc--------Cc
Q 018973          126 SIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYP-FM--VDLSRQCN-DVEFILVMGDESEKTKELCERE--------KI  193 (348)
Q Consensus       126 s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p-~l--~~la~~~~-~v~f~~vd~d~~~~~~~l~~~~--------~V  193 (348)
                      +.+.|+.+-+  .+|+++|+++.+||..|+.|.. .+  .++++... ++.-++||.++.   +++...|        |.
T Consensus        26 ~~ea~~~Ak~--e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~---Pdid~~y~~~~~~~~~~  100 (163)
T PF03190_consen   26 GEEALEKAKK--ENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREER---PDIDKIYMNAVQAMSGS  100 (163)
T ss_dssp             SHHHHHHHHH--HT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT----HHHHHHHHHHHHHHHS-
T ss_pred             CHHHHHHHHh--cCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccC---ccHHHHHHHHHHHhcCC
Confidence            4566766655  5999999999999999999874 22  22333332 378899999984   4566666        78


Q ss_pred             CCCCeEEEee-ccccccc
Q 018973          194 KKVPHFSFYK-SMEKIHE  210 (348)
Q Consensus       194 ~~~Pt~~~~~-~g~~v~~  210 (348)
                      -+.|+.+|.. +|+++..
T Consensus       101 gGwPl~vfltPdg~p~~~  118 (163)
T PF03190_consen  101 GGWPLTVFLTPDGKPFFG  118 (163)
T ss_dssp             --SSEEEEE-TTS-EEEE
T ss_pred             CCCCceEEECCCCCeeee
Confidence            8999987774 6776653

; PDB: 3IRA_A.

>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]

Probab=97.77  E-value=0.00013  Score=62.80  Aligned_cols=92  Identities=12%  Similarity=0.118  Sum_probs=73.6

Q ss_pred             CCCCCCceEecCHHHHH-HHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCc
Q 018973          115 APRDERVKKVHSIEEFD-EALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKI  193 (348)
Q Consensus       115 ~~~~~~v~~v~s~~~f~-~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V  193 (348)
                      ...-+.|.+| |..+|. ++.+...+-.|||..|...-+-|+.+..+|+.|+.+|+.++|+++-...|-.      .|-=
T Consensus        87 k~kfG~V~~I-Sg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~cIp------NYPe  159 (240)
T KOG3170|consen   87 KAKFGEVFPI-SGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATTCIP------NYPE  159 (240)
T ss_pred             Hhcccceeec-cchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEecccccccC------CCcc
Confidence            3455789999 455555 4444445889999999999999999999999999999999999998766421      3344


Q ss_pred             CCCCeEEEeecccccccccc
Q 018973          194 KKVPHFSFYKSMEKIHEEEG  213 (348)
Q Consensus       194 ~~~Pt~~~~~~g~~v~~~~G  213 (348)
                      ..+||+++|..|.....+.|
T Consensus       160 ~nlPTl~VY~~G~lk~q~ig  179 (240)
T KOG3170|consen  160 SNLPTLLVYHHGALKKQMIG  179 (240)
T ss_pred             cCCCeEEEeecchHHhheeh
Confidence            78999999999988877766

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=97.76  E-value=8.8e-05  Score=56.27  Aligned_cols=64  Identities=16%  Similarity=0.153  Sum_probs=49.3

Q ss_pred             EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCch-hHHHHHHHcCc--CCCCeEEEeeccccc
Q 018973          143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESE-KTKELCEREKI--KKVPHFSFYKSMEKI  208 (348)
Q Consensus       143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~-~~~~l~~~~~V--~~~Pt~~~~~~g~~v  208 (348)
                      |+.|..+||+.|+++...|+++..+++++.+..+|++... ...++.+.+|-  +.+|++.+  +|+.+
T Consensus         2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~i   68 (86)
T TIGR02183         2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKHV   68 (86)
T ss_pred             EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEEe
Confidence            6789999999999999999999888878888888887432 23346666663  89999854  55443

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=97.76  E-value=0.00017  Score=52.55  Aligned_cols=69  Identities=17%  Similarity=0.332  Sum_probs=51.1

Q ss_pred             EEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCCChHHHHH
Q 018973          258 LDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIG  336 (348)
Q Consensus       258 V~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~~~~~L~~  336 (348)
                      ..|..++|+.|++....|.+      .++.|-.+|+++++...+..++.|...+|++++  +|+  ....|.+++.|.+
T Consensus         2 ~ly~~~~Cp~C~~ak~~L~~------~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~--~~~~G~~~~~~~~   70 (72)
T TIGR02194         2 TVYSKNNCVQCKMTKKALEE------HGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGD--LSWSGFRPDKLKA   70 (72)
T ss_pred             EEEeCCCCHHHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCC--cEEeccCHHHHHh
Confidence            56788999999999777764      247788889988876555666678889999865  453  2456778777765

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=97.76  E-value=0.00014  Score=66.28  Aligned_cols=75  Identities=13%  Similarity=0.203  Sum_probs=58.0

Q ss_pred             HHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCc--h------hHHHHHHHcCcCCCCeEE
Q 018973          129 EFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDES--E------KTKELCEREKIKKVPHFS  200 (348)
Q Consensus       129 ~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~--~------~~~~l~~~~~V~~~Pt~~  200 (348)
                      +-++.+++..++.-++.||.+.|+.|.++.|.+..++++|+ +.++.|++|..  +      ....+++++||+.+|+++
T Consensus       140 ~~~~~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~yg-i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~  218 (256)
T TIGR02739       140 QKEKAIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG-ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALY  218 (256)
T ss_pred             HHHHHHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhC-CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEE
Confidence            34445666667899999999999999999999999999996 55555555542  1      124588999999999977


Q ss_pred             Eeec
Q 018973          201 FYKS  204 (348)
Q Consensus       201 ~~~~  204 (348)
                      +...
T Consensus       219 Lv~~  222 (256)
T TIGR02739       219 LVNP  222 (256)
T ss_pred             EEEC
Confidence            7653

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]

Probab=97.76  E-value=0.0001  Score=64.06  Aligned_cols=95  Identities=17%  Similarity=0.209  Sum_probs=81.3

Q ss_pred             CCCCCCceEecCHHHHHHHHHhc-CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCc
Q 018973          115 APRDERVKKVHSIEEFDEALRLA-KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKI  193 (348)
Q Consensus       115 ~~~~~~v~~v~s~~~f~~~l~~~-~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V  193 (348)
                      .+.-+.|.++.+.++|-+.+... +...++|+.|-+.-.-|.++...+.=||.+||-++|.++-...-    ....+|..
T Consensus       134 gp~~~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~vKFckikss~~----gas~~F~~  209 (273)
T KOG3171|consen  134 GPRYGFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSSNT----GASDRFSL  209 (273)
T ss_pred             CCccceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCceeEEEeeeccc----cchhhhcc
Confidence            34456899999999999998865 46788999999999999999999999999999999999985542    35678999


Q ss_pred             CCCCeEEEeecccccccccc
Q 018973          194 KKVPHFSFYKSMEKIHEEEG  213 (348)
Q Consensus       194 ~~~Pt~~~~~~g~~v~~~~G  213 (348)
                      .++||++||++|+.+..|+.
T Consensus       210 n~lP~LliYkgGeLIgNFv~  229 (273)
T KOG3171|consen  210 NVLPTLLIYKGGELIGNFVS  229 (273)
T ss_pred             cCCceEEEeeCCchhHHHHH
Confidence            99999999999998876543

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=97.76  E-value=8.2e-05  Score=64.98  Aligned_cols=76  Identities=13%  Similarity=0.041  Sum_probs=54.8

Q ss_pred             CCCEEEEEEe-CCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchhHHHHHHHc-CcCCCCeEEEeecccccccccc
Q 018973          138 KNKLVVVEFA-ASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEKTKELCERE-KIKKVPHFSFYKSMEKIHEEEG  213 (348)
Q Consensus       138 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~~~~l~~~~-~V~~~Pt~~~~~~g~~v~~~~G  213 (348)
                      ++++||+.|| +.||++|....+.|.++.+++.  ++.++.|..|........++.. .+..+|.-++...+..+.+..|
T Consensus        30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg  109 (187)
T PRK10382         30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD  109 (187)
T ss_pred             CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence            6789999999 9999999999999999999985  5899999999866555566543 2234544334443444444444

>PRK13191 putative peroxiredoxin; Provisional

Probab=97.74  E-value=0.00022  Score=63.69  Aligned_cols=90  Identities=14%  Similarity=0.164  Sum_probs=64.4

Q ss_pred             CcEEE-EEEeCCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchhH------------------------HHHHHhC
Q 018973          253 QKLIV-LDVGLKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDSC------------------------MQFLRDM  306 (348)
Q Consensus       253 ~k~vv-V~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~~------------------------~~l~~~~  306 (348)
                      +++++ +.|+++||+.|....+.|.+++.++.+ ++.++.+++|.....                        .++++.|
T Consensus        33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~y  112 (215)
T PRK13191         33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKRL  112 (215)
T ss_pred             CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHHc
Confidence            45555 588999999999999999999999853 477888887744321                        2456667


Q ss_pred             CCC-------ccce-EEEEeCCeEEEEEeC-----CChHHHHHHHHHHh
Q 018973          307 NVV-------EVPT-FLFIRDGQIRGRYVG-----SGKGELIGEILRYQ  342 (348)
Q Consensus       307 ~V~-------~~PT-l~~~~~G~~v~~~~G-----~~~~~L~~~l~~~~  342 (348)
                      |+.       .+|+ |++..+|++...+.+     .+.+++.+.|+.+.
T Consensus       113 gv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq  161 (215)
T PRK13191        113 GMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRALQ  161 (215)
T ss_pred             CCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence            763       3674 566679998887543     36788888887653

>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=97.74  E-value=7.2e-06  Score=72.20  Aligned_cols=96  Identities=20%  Similarity=0.373  Sum_probs=80.1

Q ss_pred             cCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchhHHHHHHhCCCCccceE
Q 018973          236 LHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDSCMQFLRDMNVVEVPTF  314 (348)
Q Consensus       236 ~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl  314 (348)
                      ..+.+++...+.      .-+++.|+++||+.|....+.|++++.--.+ .+++++||+..++.   |.-+|=+..+||+
T Consensus        28 ~~~eenw~~~l~------gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npg---LsGRF~vtaLptI   98 (248)
T KOG0913|consen   28 RIDEENWKELLT------GEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPG---LSGRFLVTALPTI   98 (248)
T ss_pred             Eecccchhhhhc------hHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccc---cceeeEEEecceE
Confidence            346677877765      4578999999999999999999988755322 38999999999998   8889999999999


Q ss_pred             EEEeCCeEEEEEeCC-ChHHHHHHHHHH
Q 018973          315 LFIRDGQIRGRYVGS-GKGELIGEILRY  341 (348)
Q Consensus       315 ~~~~~G~~v~~~~G~-~~~~L~~~l~~~  341 (348)
                      .-.++|.. -+|.|+ ++++++.++...
T Consensus        99 YHvkDGeF-rrysgaRdk~dfisf~~~r  125 (248)
T KOG0913|consen   99 YHVKDGEF-RRYSGARDKNDFISFEEHR  125 (248)
T ss_pred             EEeecccc-ccccCcccchhHHHHHHhh
Confidence            99999975 578898 999999988743

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=97.73  E-value=0.00011  Score=54.67  Aligned_cols=61  Identities=18%  Similarity=0.188  Sum_probs=45.3

Q ss_pred             EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCch-h-HHHHHHHcCcCCCCeEEEeeccccc
Q 018973          143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESE-K-TKELCEREKIKKVPHFSFYKSMEKI  208 (348)
Q Consensus       143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~-~-~~~l~~~~~V~~~Pt~~~~~~g~~v  208 (348)
                      |+.|+++||+.|+.+.+.|+++..+   ..++.++.++.. + ...+.+..|+..+|++  |.+|+.+
T Consensus         2 v~~y~~~~Cp~C~~~~~~l~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~i   64 (82)
T cd03419           2 VVVFSKSYCPYCKRAKSLLKELGVK---PAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKFI   64 (82)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHcCCC---cEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEE
Confidence            5789999999999999999997663   477788876542 1 1245667799999997  4466554

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=97.72  E-value=0.00028  Score=63.75  Aligned_cols=83  Identities=13%  Similarity=0.204  Sum_probs=60.1

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEE--ECC----------------C------------------
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARM--NGD----------------E------------------  295 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~v--d~~----------------~------------------  295 (348)
                      +++.+++.|..+.|++|+++.+.+.++.+.   .+.+..+  ...                +                  
T Consensus       106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~---~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~  182 (232)
T PRK10877        106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL---GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPA  182 (232)
T ss_pred             CCCEEEEEEECCCChHHHHHHHHHHHHhcC---CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcc
Confidence            567889999999999999999888876542   2443332  210                0                  


Q ss_pred             ---c--hhHHHHHHhCCCCccceEEEEeCCeEEEEEeCC-ChHHHHHHHHHH
Q 018973          296 ---N--DSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS-GKGELIGEILRY  341 (348)
Q Consensus       296 ---~--~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~~  341 (348)
                         .  ++..++++++||+++||++ +.||+.+   .|. +.++|.++|++.
T Consensus       183 ~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~~---~G~~~~~~L~~~l~~~  230 (232)
T PRK10877        183 SCDVDIADHYALGVQFGVQGTPAIV-LSNGTLV---PGYQGPKEMKAFLDEH  230 (232)
T ss_pred             cccchHHHhHHHHHHcCCccccEEE-EcCCeEe---eCCCCHHHHHHHHHHc
Confidence               0  0123477789999999999 6788765   788 899999998864

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=97.70  E-value=0.00036  Score=63.93  Aligned_cols=90  Identities=13%  Similarity=0.067  Sum_probs=65.3

Q ss_pred             CcEEEEEEe-CCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchh-------------------------HHHHHHh
Q 018973          253 QKLIVLDVG-LKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDS-------------------------CMQFLRD  305 (348)
Q Consensus       253 ~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~-------------------------~~~l~~~  305 (348)
                      +++++++|| +.||+.|....+.|.++.+++.+ ++.++.|.+|....                         ..++++.
T Consensus        98 gk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iaka  177 (261)
T PTZ00137         98 DSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKS  177 (261)
T ss_pred             CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHHH
Confidence            567777777 89999999999999999999853 37777777765210                         1247777


Q ss_pred             CCCC-----ccce-EEEEeCCeEEEEEe-----CCChHHHHHHHHHHh
Q 018973          306 MNVV-----EVPT-FLFIRDGQIRGRYV-----GSGKGELIGEILRYQ  342 (348)
Q Consensus       306 ~~V~-----~~PT-l~~~~~G~~v~~~~-----G~~~~~L~~~l~~~~  342 (348)
                      ||+.     ..|+ |++.++|+++....     |.+.+++.+.|+.+.
T Consensus       178 yGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~alq  225 (261)
T PTZ00137        178 FGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAVQ  225 (261)
T ss_pred             cCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhc
Confidence            8885     4785 55557999988663     237888888877653

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=97.69  E-value=0.00014  Score=52.00  Aligned_cols=60  Identities=25%  Similarity=0.205  Sum_probs=45.4

Q ss_pred             EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchh-HHHHHHHcCcCCCCeEEEeecccccc
Q 018973          143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEK-TKELCEREKIKKVPHFSFYKSMEKIH  209 (348)
Q Consensus       143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~-~~~l~~~~~V~~~Pt~~~~~~g~~v~  209 (348)
                      ++.|+++||++|+.+.+.|.+..     +.|..+|+++.++ ..++.+..+...+|++.+  +|+.+.
T Consensus         2 v~ly~~~~Cp~C~~~~~~L~~~~-----i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~--~~~~ig   62 (72)
T cd02066           2 VVVFSKSTCPYCKRAKRLLESLG-----IEFEEIDILEDGELREELKELSGWPTVPQIFI--NGEFIG   62 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHcC-----CcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEe
Confidence            57889999999999999988753     7778888887553 345566678889998743  665554

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=97.69  E-value=0.00025  Score=62.53  Aligned_cols=90  Identities=14%  Similarity=0.130  Sum_probs=64.2

Q ss_pred             CCcEEEEEEe-CCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchh-------------------------HHHHHH
Q 018973          252 DQKLIVLDVG-LKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDS-------------------------CMQFLR  304 (348)
Q Consensus       252 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~-------------------------~~~l~~  304 (348)
                      .++.++|+|| +.||+.|....+.|.++.+++.+ ++.++.|+.+....                         ..++++
T Consensus        35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~  114 (199)
T PTZ00253         35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR  114 (199)
T ss_pred             CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence            3678999999 48899999988999999998853 47788887763221                         235777


Q ss_pred             hCCCC------ccce-EEEEeCCeEEEEEeCC-----ChHHHHHHHHHH
Q 018973          305 DMNVV------EVPT-FLFIRDGQIRGRYVGS-----GKGELIGEILRY  341 (348)
Q Consensus       305 ~~~V~------~~PT-l~~~~~G~~v~~~~G~-----~~~~L~~~l~~~  341 (348)
                      .||+.      .+|+ +++.++|+++....+.     +.+++.+.|+..
T Consensus       115 ~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~  163 (199)
T PTZ00253        115 SYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAF  163 (199)
T ss_pred             HcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhh
Confidence            88885      3574 5666799988877653     455566665544

>PRK13599 putative peroxiredoxin; Provisional

Probab=97.63  E-value=0.00051  Score=61.36  Aligned_cols=89  Identities=12%  Similarity=0.193  Sum_probs=64.2

Q ss_pred             CcE-EEEEEeCCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchhH------------------------HHHHHhC
Q 018973          253 QKL-IVLDVGLKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDSC------------------------MQFLRDM  306 (348)
Q Consensus       253 ~k~-vvV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~~------------------------~~l~~~~  306 (348)
                      +++ +++.|+++||+.|....+.|.++..++.+ ++.++.+++|.....                        .++++.|
T Consensus        28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~y  107 (215)
T PRK13599         28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQL  107 (215)
T ss_pred             CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHc
Confidence            455 56799999999999999999999999853 478888887753211                        1356667


Q ss_pred             CCC-------ccce-EEEEeCCeEEEEEe-----CCChHHHHHHHHHH
Q 018973          307 NVV-------EVPT-FLFIRDGQIRGRYV-----GSGKGELIGEILRY  341 (348)
Q Consensus       307 ~V~-------~~PT-l~~~~~G~~v~~~~-----G~~~~~L~~~l~~~  341 (348)
                      |+.       .+|+ |++.++|+++..+.     |.+.+++.+.|+.+
T Consensus       108 g~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l  155 (215)
T PRK13599        108 GMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL  155 (215)
T ss_pred             CCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence            873       5795 55557999887654     22677777777654

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=97.63  E-value=0.00054  Score=49.81  Aligned_cols=69  Identities=14%  Similarity=0.235  Sum_probs=48.7

Q ss_pred             EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCCChHHHHH
Q 018973          257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIG  336 (348)
Q Consensus       257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~~~~~L~~  336 (348)
                      ++.|..+||+.|.+....|.+    +  ++.|..+|+++.+....+.+..+...+|.++  .+|+.++   |  .++|.+
T Consensus         3 v~lys~~~Cp~C~~ak~~L~~----~--~i~~~~~~v~~~~~~~~~~~~~g~~~vP~if--i~g~~ig---g--~~~l~~   69 (72)
T cd03029           3 VSLFTKPGCPFCARAKAALQE----N--GISYEEIPLGKDITGRSLRAVTGAMTVPQVF--IDGELIG---G--SDDLEK   69 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHH----c--CCCcEEEECCCChhHHHHHHHhCCCCcCeEE--ECCEEEe---C--HHHHHH
Confidence            577899999999998776664    2  3677788888766545565667889999974  4776542   3  355555


Q ss_pred             HH
Q 018973          337 EI  338 (348)
Q Consensus       337 ~l  338 (348)
                      +|
T Consensus        70 ~l   71 (72)
T cd03029          70 YF   71 (72)
T ss_pred             Hh
Confidence            54

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>PRK13189 peroxiredoxin; Provisional

Probab=97.62  E-value=0.00054  Score=61.50  Aligned_cols=90  Identities=14%  Similarity=0.211  Sum_probs=63.7

Q ss_pred             Cc-EEEEEEeCCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchh------------------------HHHHHHhC
Q 018973          253 QK-LIVLDVGLKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDS------------------------CMQFLRDM  306 (348)
Q Consensus       253 ~k-~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~------------------------~~~l~~~~  306 (348)
                      ++ .+++.||++||+.|....+.|.++.+++.+ ++.++.|.+|....                        ..++++.|
T Consensus        35 Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~y  114 (222)
T PRK13189         35 GKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKKL  114 (222)
T ss_pred             CCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHHh
Confidence            45 455678899999999999999999988853 37777777764321                        12366677


Q ss_pred             CCC-------ccce-EEEEeCCeEEEEEe-----CCChHHHHHHHHHHh
Q 018973          307 NVV-------EVPT-FLFIRDGQIRGRYV-----GSGKGELIGEILRYQ  342 (348)
Q Consensus       307 ~V~-------~~PT-l~~~~~G~~v~~~~-----G~~~~~L~~~l~~~~  342 (348)
                      |+.       .+|+ |++..+|+++....     |.+.+++.+.|+.+.
T Consensus       115 gv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq  163 (222)
T PRK13189        115 GMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKALQ  163 (222)
T ss_pred             CCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence            865       4674 55557999887654     336778888887653

>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=97.60  E-value=0.0015  Score=53.63  Aligned_cols=108  Identities=12%  Similarity=0.184  Sum_probs=77.3

Q ss_pred             ceeecCChhhHHHHhhhcccCCcEEEEEEeCC--CChh-h-hhhhhHHHHHHHHhCCc-EEEEEEECCCchhHHHHHHhC
Q 018973          232 AVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLK--HCGP-C-VKVYPTVIKLSRQMAGT-VVFARMNGDENDSCMQFLRDM  306 (348)
Q Consensus       232 ~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~--wC~~-C-~~~~p~l~~la~~~~~~-v~~~~vd~~~~~~~~~l~~~~  306 (348)
                      .++++.+.+.+++.=.    .++.-+|-|.-.  .|.. + ......|.++++.++++ +.|+.+|.++...   +.+.|
T Consensus         3 ~~~~l~~~~~~~~~C~----~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~---~~~~f   75 (130)
T cd02983           3 EIIELTSEDVFEETCE----EKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLD---LEEAL   75 (130)
T ss_pred             ceEEecCHHHHHhhcc----CCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHH---HHHHc
Confidence            4566767666665443    234555555421  1222 3 45567899999999999 9999999999887   99999


Q ss_pred             CCC--ccceEEEEeCCeEEEE-EeCC-ChHHHHHHHHHHhCCCC
Q 018973          307 NVV--EVPTFLFIRDGQIRGR-YVGS-GKGELIGEILRYQGVRV  346 (348)
Q Consensus       307 ~V~--~~PTl~~~~~G~~v~~-~~G~-~~~~L~~~l~~~~~~~~  346 (348)
                      |+.  ++|+++++...+.... +.|. +.+.+.+|+++++.-++
T Consensus        76 gl~~~~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gkl  119 (130)
T cd02983          76 NIGGFGYPAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGRG  119 (130)
T ss_pred             CCCccCCCEEEEEecccCccccccCccCHHHHHHHHHHHHcCCc
Confidence            995  4999988865332333 5577 99999999999976554

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.

>PRK10329 glutaredoxin-like protein; Provisional

Probab=97.60  E-value=0.00034  Score=52.43  Aligned_cols=68  Identities=12%  Similarity=0.185  Sum_probs=50.5

Q ss_pred             EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeeccccccccccCCCCccc
Q 018973          143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQLM  220 (348)
Q Consensus       143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~~v~~~~G~~~~~l~  220 (348)
                      +..|..+||++|++....|++     .++.|-.+|+++.++..+..+..|...+|++++  +++   .+.|.+++.|.
T Consensus         3 v~lYt~~~Cp~C~~ak~~L~~-----~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~---~~~Gf~~~~l~   70 (81)
T PRK10329          3 ITIYTRNDCVQCHATKRAMES-----RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDL---SWSGFRPDMIN   70 (81)
T ss_pred             EEEEeCCCCHhHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCE---EEecCCHHHHH
Confidence            568899999999999988865     578899999988665555556678899999965  332   34455555544

>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=97.59  E-value=8.5e-06  Score=71.78  Aligned_cols=87  Identities=20%  Similarity=0.248  Sum_probs=71.9

Q ss_pred             CceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCCCchhHHHHHHHcCcCCCC
Q 018973          120 RVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGDESEKTKELCEREKIKKVP  197 (348)
Q Consensus       120 ~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d~~~~~~~l~~~~~V~~~P  197 (348)
                      .++.+ +.+++.++++    .-++++|+|+||+.|+...|+|+.++.--.|  +.+.+||+..+   +-|.-+|=|..+|
T Consensus        25 ~~~~~-~eenw~~~l~----gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~n---pgLsGRF~vtaLp   96 (248)
T KOG0913|consen   25 KLTRI-DEENWKELLT----GEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTN---PGLSGRFLVTALP   96 (248)
T ss_pred             eeEEe-cccchhhhhc----hHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEec---cccceeeEEEecc
Confidence            45555 8999999986    3489999999999999999999999886555  89999999984   4588999999999


Q ss_pred             eEEEeeccccccccccCC
Q 018973          198 HFSFYKSMEKIHEEEGIG  215 (348)
Q Consensus       198 t~~~~~~g~~v~~~~G~~  215 (348)
                      ||.-.++|+- .++.|+.
T Consensus        97 tIYHvkDGeF-rrysgaR  113 (248)
T KOG0913|consen   97 TIYHVKDGEF-RRYSGAR  113 (248)
T ss_pred             eEEEeecccc-ccccCcc
Confidence            9988888754 4566643

>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []

Probab=97.58  E-value=0.0011  Score=61.84  Aligned_cols=104  Identities=15%  Similarity=0.254  Sum_probs=72.4

Q ss_pred             ceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhh-----hhhHHHHHHHHh--CCcEEEEEEECCCchhHHHHHH
Q 018973          232 AVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVK-----VYPTVIKLSRQM--AGTVVFARMNGDENDSCMQFLR  304 (348)
Q Consensus       232 ~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~-----~~p~l~~la~~~--~~~v~~~~vd~~~~~~~~~l~~  304 (348)
                      ++..+ +..+|.+.++..    +.++|+|+.+--..-..     +...+-+|+.+.  ...+.|+.||..+...   +++
T Consensus        35 RVi~L-neKNfk~~lKky----d~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~k---lAK  106 (383)
T PF01216_consen   35 RVIDL-NEKNFKRALKKY----DVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAK---LAK  106 (383)
T ss_dssp             -CEEE--TTTHHHHHHH-----SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHH---HHH
T ss_pred             ceEEc-chhHHHHHHHhh----cEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHH---HHH
Confidence            34444 568899998864    78888999876433222     123344455444  2349999999999887   999


Q ss_pred             hCCCCccceEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhCC
Q 018973          305 DMNVVEVPTFLFIRDGQIRGRYVGS-GKGELIGEILRYQGV  344 (348)
Q Consensus       305 ~~~V~~~PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~~  344 (348)
                      ++|+...+++.+|++|+++.. .|. +++.|++||...+.-
T Consensus       107 KLgv~E~~SiyVfkd~~~IEy-dG~~saDtLVeFl~dl~ed  146 (383)
T PF01216_consen  107 KLGVEEEGSIYVFKDGEVIEY-DGERSADTLVEFLLDLLED  146 (383)
T ss_dssp             HHT--STTEEEEEETTEEEEE--S--SHHHHHHHHHHHHSS
T ss_pred             hcCccccCcEEEEECCcEEEe-cCccCHHHHHHHHHHhccc
Confidence            999999999999999998865 488 999999999988653

It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.

>PHA03050 glutaredoxin; Provisional

Probab=97.57  E-value=0.00032  Score=55.57  Aligned_cols=64  Identities=14%  Similarity=0.076  Sum_probs=44.0

Q ss_pred             EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCC-c-hhHHHHHHHcCcCCCCeEEEeeccccc
Q 018973          143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE-S-EKTKELCEREKIKKVPHFSFYKSMEKI  208 (348)
Q Consensus       143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~-~-~~~~~l~~~~~V~~~Pt~~~~~~g~~v  208 (348)
                      |+.|..+|||.|++....|+++.-+++.+..+.||-.. . +...++.+..|.+.+|++++  +|+.+
T Consensus        15 V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI--~g~~i   80 (108)
T PHA03050         15 VTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF--GKTSI   80 (108)
T ss_pred             EEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE--CCEEE
Confidence            77899999999999999998875555445555555311 1 22345666678899999854  56544

>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long

Probab=97.54  E-value=0.00028  Score=55.53  Aligned_cols=86  Identities=14%  Similarity=0.147  Sum_probs=61.3

Q ss_pred             hhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhh---HHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEE
Q 018973          239 KEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYP---TVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL  315 (348)
Q Consensus       239 ~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p---~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~  315 (348)
                      .++++.++..    ....+ .|++..|..+.+...   .+-++.+.+++.+..+.+......   ++.++||+..+|+++
T Consensus        16 ~~~ld~~l~~----~~~~v-lf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~---~L~~r~gv~~~PaLv   87 (107)
T PF07449_consen   16 ADTLDAFLAA----PGDAV-LFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAER---ALAARFGVRRWPALV   87 (107)
T ss_dssp             CCCHHHHHHC----CSCEE-EEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHH---HHHHHHT-TSSSEEE
T ss_pred             hhhHHHHHhC----CCcEE-EEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHH---HHHHHhCCccCCeEE
Confidence            4567777774    34444 455555555555443   778888889888877777733333   499999999999999


Q ss_pred             EEeCCeEEEEEeCC-ChH
Q 018973          316 FIRDGQIRGRYVGS-GKG  332 (348)
Q Consensus       316 ~~~~G~~v~~~~G~-~~~  332 (348)
                      ++++|+.++.+.|. +-.
T Consensus        88 f~R~g~~lG~i~gi~dW~  105 (107)
T PF07449_consen   88 FFRDGRYLGAIEGIRDWA  105 (107)
T ss_dssp             EEETTEEEEEEESSSTHH
T ss_pred             EEECCEEEEEecCeeccc
Confidence            99999999999987 543

This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=97.52  E-value=0.00061  Score=50.59  Aligned_cols=61  Identities=13%  Similarity=0.177  Sum_probs=43.2

Q ss_pred             EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch-hH-HHHHHhCCCCccceEEEEeCCeEE
Q 018973          257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND-SC-MQFLRDMNVVEVPTFLFIRDGQIR  323 (348)
Q Consensus       257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~-~~-~~l~~~~~V~~~PTl~~~~~G~~v  323 (348)
                      ++.|+++||++|..+...|.++..    .+.++.++.+... +. ..+.+..++.++|++  |.+|+.+
T Consensus         2 v~~y~~~~Cp~C~~~~~~l~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~i   64 (82)
T cd03419           2 VVVFSKSYCPYCKRAKSLLKELGV----KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKFI   64 (82)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHcCC----CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEE
Confidence            577899999999999888877643    3567777776542 22 235566788899997  4477654

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>PRK15000 peroxidase; Provisional

Probab=97.51  E-value=0.00026  Score=62.48  Aligned_cols=76  Identities=14%  Similarity=0.023  Sum_probs=53.1

Q ss_pred             CCCEEEEEEeCC-CCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchhHHHHH----HHcCcCCCCeEEEeeccccccc
Q 018973          138 KNKLVVVEFAAS-RSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEKTKELC----EREKIKKVPHFSFYKSMEKIHE  210 (348)
Q Consensus       138 ~~k~vvV~F~a~-wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~~~~l~----~~~~V~~~Pt~~~~~~g~~v~~  210 (348)
                      +++.|||.||+. ||++|....+.|.++++++.  ++.++.|.+|.........    ++.|+..+|.-++......+.+
T Consensus        33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~  112 (200)
T PRK15000         33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK  112 (200)
T ss_pred             CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence            578999999995 99999999999999999985  5899999999744333333    3356654554444444434433


Q ss_pred             ccc
Q 018973          211 EEG  213 (348)
Q Consensus       211 ~~G  213 (348)
                      ..|
T Consensus       113 ~yg  115 (200)
T PRK15000        113 AYG  115 (200)
T ss_pred             HcC
Confidence            334

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=97.50  E-value=0.00032  Score=62.11  Aligned_cols=42  Identities=14%  Similarity=0.107  Sum_probs=36.2

Q ss_pred             EEEEEEeCCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCch
Q 018973          141 LVVVEFAASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESE  182 (348)
Q Consensus       141 ~vvV~F~a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~  182 (348)
                      .||+.|+++||+.|....+.|.++++++.  ++.++.|.+|...
T Consensus        28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~   71 (203)
T cd03016          28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVE   71 (203)
T ss_pred             EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHH
Confidence            45668999999999999999999999885  5899999988743

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=97.48  E-value=0.0007  Score=59.52  Aligned_cols=79  Identities=19%  Similarity=0.229  Sum_probs=53.9

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEEC--CC----------------------------------
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNG--DE----------------------------------  295 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~--~~----------------------------------  295 (348)
                      +.+..++.|..+.|++|+++.+.+.+    ..+++.+..+..  ..                                  
T Consensus        76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~----~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~  151 (197)
T cd03020          76 NGKRVVYVFTDPDCPYCRKLEKELKP----NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPA  151 (197)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHhh----ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCc
Confidence            46789999999999999999888776    122333332221  10                                  


Q ss_pred             ------chhHHHHHHhCCCCccceEEEEeCCeEEEEEeCC-ChHHHHHHH
Q 018973          296 ------NDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS-GKGELIGEI  338 (348)
Q Consensus       296 ------~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~-~~~~L~~~l  338 (348)
                            -+...++++++||.++||++ +.+|+.   +.|. +.++|.++|
T Consensus       152 ~~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~~~~~l~~~L  197 (197)
T cd03020         152 ASCDNPVAANLALGRQLGVNGTPTIV-LADGRV---VPGAPPAAQLEALL  197 (197)
T ss_pred             cccCchHHHHHHHHHHcCCCcccEEE-ECCCeE---ecCCCCHHHHHhhC
Confidence                  00122467779999999997 788876   4688 777777653

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=97.48  E-value=0.00058  Score=48.76  Aligned_cols=60  Identities=17%  Similarity=0.278  Sum_probs=44.1

Q ss_pred             EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhH-HHHHHhCCCCccceEEEEeCCeEEE
Q 018973          257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSC-MQFLRDMNVVEVPTFLFIRDGQIRG  324 (348)
Q Consensus       257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~-~~l~~~~~V~~~PTl~~~~~G~~v~  324 (348)
                      ++.|+++||++|+.+...|.+..      +.|..+|++++++. .++.+..+...+|++++  +|+.++
T Consensus         2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~--~~~~ig   62 (72)
T cd02066           2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSGWPTVPQIFI--NGEFIG   62 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEe
Confidence            56789999999999987777642      67778888877642 34555678888897754  776654

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=97.47  E-value=0.0005  Score=50.10  Aligned_cols=69  Identities=13%  Similarity=0.246  Sum_probs=49.8

Q ss_pred             EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeeccccccccccCCCCccc
Q 018973          143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQLM  220 (348)
Q Consensus       143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~~v~~~~G~~~~~l~  220 (348)
                      +..|..++|+.|++....|++     .++.|-.+|+++.++..+...+.|...+|++++  +|+  ..+.|.+++.+.
T Consensus         1 v~ly~~~~Cp~C~~ak~~L~~-----~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~--~~~~G~~~~~~~   69 (72)
T TIGR02194         1 ITVYSKNNCVQCKMTKKALEE-----HGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGD--LSWSGFRPDKLK   69 (72)
T ss_pred             CEEEeCCCCHHHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCC--cEEeccCHHHHH
Confidence            357888999999999988876     467888888887665555555669999999865  343  245566555543

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.45  E-value=0.00043  Score=70.61  Aligned_cols=65  Identities=12%  Similarity=0.050  Sum_probs=55.8

Q ss_pred             CCEE-EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeeccccc
Q 018973          139 NKLV-VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKI  208 (348)
Q Consensus       139 ~k~v-vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~~v  208 (348)
                      ++++ +-.|.+++|+.|......+.+++.+.+++..-.+|..+   .++++++|+|.++|++++  ||+.+
T Consensus       475 ~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~---~~~~~~~~~v~~vP~~~i--~~~~~  540 (555)
T TIGR03143       475 TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSH---FPDLKDEYGIMSVPAIVV--DDQQV  540 (555)
T ss_pred             CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcc---cHHHHHhCCceecCEEEE--CCEEE
Confidence            3455 55668999999999999999999999999999999998   566999999999999987  55544

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.44  E-value=0.00048  Score=69.71  Aligned_cols=77  Identities=10%  Similarity=0.143  Sum_probs=62.6

Q ss_pred             HHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeeccc
Q 018973          127 IEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSME  206 (348)
Q Consensus       127 ~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~  206 (348)
                      .++..+.+++-.+..-+-.|+++.|++|......+.+++.+.+++.+-.||..+   .++++++|+|.++|++++  ||+
T Consensus       104 ~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~---~~~~~~~~~v~~VP~~~i--~~~  178 (517)
T PRK15317        104 DQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGAL---FQDEVEARNIMAVPTVFL--NGE  178 (517)
T ss_pred             CHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchh---CHhHHHhcCCcccCEEEE--CCc
Confidence            344455555434555688999999999999999999999999999999999888   566999999999999966  554


Q ss_pred             cc
Q 018973          207 KI  208 (348)
Q Consensus       207 ~v  208 (348)
                      .+
T Consensus       179 ~~  180 (517)
T PRK15317        179 EF  180 (517)
T ss_pred             EE
Confidence            33

>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=97.44  E-value=0.00085  Score=51.57  Aligned_cols=92  Identities=18%  Similarity=0.279  Sum_probs=68.4

Q ss_pred             ecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceE
Q 018973          235 QLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTF  314 (348)
Q Consensus       235 ~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl  314 (348)
                      .+.+.+++++++..    +++++|-|+..++.+   ....+.+++..+++.+.|+.+.   +.+   +++++++. .|++
T Consensus         3 ~i~s~~~l~~~~~~----~~~~vvg~f~~~~~~---~~~~f~~~A~~~r~~~~F~~~~---~~~---~~~~~~~~-~~~i   68 (97)
T cd02981           3 ELTSKEELEKFLDK----DDVVVVGFFKDEESE---EYKTFEKVAESLRDDYGFGHTS---DKE---VAKKLKVK-PGSV   68 (97)
T ss_pred             ecCCHHHHHHHhcc----CCeEEEEEECCCCcH---HHHHHHHHHHhcccCCeEEEEC---hHH---HHHHcCCC-CCce
Confidence            45677778877663    688888889888874   4556889999987778888776   233   78888765 4899


Q ss_pred             EEEeCC-eEEEEEeCC-ChHHHHHHHHH
Q 018973          315 LFIRDG-QIRGRYVGS-GKGELIGEILR  340 (348)
Q Consensus       315 ~~~~~G-~~v~~~~G~-~~~~L~~~l~~  340 (348)
                      ++|+.+ +....+.|. +.++|.+||..
T Consensus        69 ~l~~~~~~~~~~y~g~~~~~~l~~fi~~   96 (97)
T cd02981          69 VLFKPFEEEPVEYDGEFTEESLVEFIKD   96 (97)
T ss_pred             EEeCCcccCCccCCCCCCHHHHHHHHHh
Confidence            999764 444557787 88899999864

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=97.44  E-value=0.00039  Score=61.31  Aligned_cols=45  Identities=20%  Similarity=0.152  Sum_probs=38.8

Q ss_pred             CCCEEEEEEeC-CCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCch
Q 018973          138 KNKLVVVEFAA-SRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESE  182 (348)
Q Consensus       138 ~~k~vvV~F~a-~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~  182 (348)
                      +++.++|.||+ .||+.|....+.|.++++++.  ++.++.|+.|...
T Consensus        35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~   82 (199)
T PTZ00253         35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEY   82 (199)
T ss_pred             CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHH
Confidence            57899999995 789999999999999999986  5899999988643

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=97.44  E-value=0.00055  Score=49.80  Aligned_cols=59  Identities=14%  Similarity=0.076  Sum_probs=44.8

Q ss_pred             EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeeccccc
Q 018973          143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKI  208 (348)
Q Consensus       143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~~v  208 (348)
                      ++.|..+||+.|.+....|++     .++.|..+|+++.+....+.+..|...+|.+.  .+|+.+
T Consensus         3 v~lys~~~Cp~C~~ak~~L~~-----~~i~~~~~~v~~~~~~~~~~~~~g~~~vP~if--i~g~~i   61 (72)
T cd03029           3 VSLFTKPGCPFCARAKAALQE-----NGISYEEIPLGKDITGRSLRAVTGAMTVPQVF--IDGELI   61 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHH-----cCCCcEEEECCCChhHHHHHHHhCCCCcCeEE--ECCEEE
Confidence            678899999999999888875     35777888887765445566667999999974  356544

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=97.40  E-value=0.00034  Score=54.53  Aligned_cols=59  Identities=20%  Similarity=0.183  Sum_probs=39.7

Q ss_pred             EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHH----HHHhCCCCccceEEEEeCCeEE
Q 018973          257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQ----FLRDMNVVEVPTFLFIRDGQIR  323 (348)
Q Consensus       257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~----l~~~~~V~~~PTl~~~~~G~~v  323 (348)
                      ++.|..+||++|.++...|.+.      ++.|..+|+++.++..+    +.+..|...+|.++  -+|+.+
T Consensus        10 Vvvysk~~Cp~C~~ak~~L~~~------~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vf--i~g~~i   72 (99)
T TIGR02189        10 VVIFSRSSCCMCHVVKRLLLTL------GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVF--VGGKLV   72 (99)
T ss_pred             EEEEECCCCHHHHHHHHHHHHc------CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEE--ECCEEE
Confidence            5678999999999987766553      25556677766554333    33334678899874  477655

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=97.37  E-value=0.00071  Score=61.42  Aligned_cols=75  Identities=12%  Similarity=0.085  Sum_probs=55.6

Q ss_pred             HHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCch------hHHHHHHHcCcCCCCeEEEe
Q 018973          130 FDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESE------KTKELCEREKIKKVPHFSFY  202 (348)
Q Consensus       130 f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~------~~~~l~~~~~V~~~Pt~~~~  202 (348)
                      -++.+++..++.-++.||.+.|+.|..+.|.++.++++|+= +..+.+|+.-.+      .....++++||+.+|++++.
T Consensus       134 ~~~~i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv  213 (248)
T PRK13703        134 QRQAIAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLV  213 (248)
T ss_pred             HHHHHHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEE
Confidence            33446655678999999999999999999999999999962 555555542211      01345689999999998777


Q ss_pred             ec
Q 018973          203 KS  204 (348)
Q Consensus       203 ~~  204 (348)
                      ..
T Consensus       214 ~~  215 (248)
T PRK13703        214 DP  215 (248)
T ss_pred             EC
Confidence            53

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=97.35  E-value=0.00055  Score=53.35  Aligned_cols=59  Identities=19%  Similarity=0.126  Sum_probs=40.5

Q ss_pred             EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHH----HHHHcCcCCCCeEEEeeccccc
Q 018973          143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKE----LCEREKIKKVPHFSFYKSMEKI  208 (348)
Q Consensus       143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~----l~~~~~V~~~Pt~~~~~~g~~v  208 (348)
                      |+.|..+||+.|++....|+++     ++.|-.+|+|+.++..+    +.+..|.+.+|.+.  -+|+.+
T Consensus        10 Vvvysk~~Cp~C~~ak~~L~~~-----~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vf--i~g~~i   72 (99)
T TIGR02189        10 VVIFSRSSCCMCHVVKRLLLTL-----GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVF--VGGKLV   72 (99)
T ss_pred             EEEEECCCCHHHHHHHHHHHHc-----CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEE--ECCEEE
Confidence            6678999999999999888775     34455666665443333    34445788999973  466544

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>PRK13190 putative peroxiredoxin; Provisional

Probab=97.31  E-value=0.00061  Score=60.28  Aligned_cols=56  Identities=18%  Similarity=0.087  Sum_probs=42.4

Q ss_pred             CCCEEEE-EEeCCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchhHHHHH----HHcCc
Q 018973          138 KNKLVVV-EFAASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEKTKELC----EREKI  193 (348)
Q Consensus       138 ~~k~vvV-~F~a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~~~~l~----~~~~V  193 (348)
                      +++.++| .|+++||+.|....+.|.++.+++.  ++.++.|.+|......+.+    +++|+
T Consensus        26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~   88 (202)
T PRK13190         26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGI   88 (202)
T ss_pred             CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCC
Confidence            4665555 6899999999999999999999885  5899999998754333333    34565

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=97.28  E-value=0.0015  Score=47.60  Aligned_cols=59  Identities=14%  Similarity=0.166  Sum_probs=43.0

Q ss_pred             EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchh-HHHHHHHcCcC-CCCeEEEeeccccc
Q 018973          143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEK-TKELCEREKIK-KVPHFSFYKSMEKI  208 (348)
Q Consensus       143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~-~~~l~~~~~V~-~~Pt~~~~~~g~~v  208 (348)
                      ++.|..+||+.|++....|++     .++.|..+|+++.++ ..++.+.+|.. .+|++++  +|+.+
T Consensus         2 i~ly~~~~Cp~C~~ak~~L~~-----~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i--~g~~i   62 (75)
T cd03418           2 VEIYTKPNCPYCVRAKALLDK-----KGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI--GDVHI   62 (75)
T ss_pred             EEEEeCCCChHHHHHHHHHHH-----CCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE--CCEEE
Confidence            568899999999999988876     357777888877532 34455667877 8998753  56544

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=97.24  E-value=0.0023  Score=58.57  Aligned_cols=85  Identities=16%  Similarity=0.277  Sum_probs=58.3

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECC----------------C--------------------
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGD----------------E--------------------  295 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~----------------~--------------------  295 (348)
                      +.+.+++.|..+.|++|+++.+.+.++.+.  +++.+..+...                +                    
T Consensus       116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~  193 (251)
T PRK11657        116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS--GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKP  193 (251)
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHhhc--CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCc
Confidence            467889999999999999998887766544  33444433210                0                    


Q ss_pred             ----chh-------HHHHHHhCCCCccceEEEEe-CCeEEEEEeCC-ChHHHHHHHH
Q 018973          296 ----NDS-------CMQFLRDMNVVEVPTFLFIR-DGQIRGRYVGS-GKGELIGEIL  339 (348)
Q Consensus       296 ----~~~-------~~~l~~~~~V~~~PTl~~~~-~G~~v~~~~G~-~~~~L~~~l~  339 (348)
                          .++       ..++++++||+++||+++-. +|+ +..+.|. +.++|.+.|.
T Consensus       194 ~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~-~~~v~G~~~~~~L~~~l~  249 (251)
T PRK11657        194 PASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGT-LQQVVGLPDPAQLAEIMG  249 (251)
T ss_pred             cccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCC-EEEecCCCCHHHHHHHhC
Confidence                001       12366779999999998875 463 4566798 8888887764

>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long

Probab=97.24  E-value=0.00072  Score=53.20  Aligned_cols=86  Identities=17%  Similarity=0.246  Sum_probs=59.7

Q ss_pred             eEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHH---hhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCC
Q 018973          122 KKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSS---KIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVP  197 (348)
Q Consensus       122 ~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~---~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~P  197 (348)
                      ..+ +.+++++.+.  .....+ .|++..|..+.   -+.-.+-+|.+.+++ +....++-+.   ..+|..+||+...|
T Consensus        12 ~~v-d~~~ld~~l~--~~~~~v-lf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~---e~~L~~r~gv~~~P   84 (107)
T PF07449_consen   12 PRV-DADTLDAFLA--APGDAV-LFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAA---ERALAARFGVRRWP   84 (107)
T ss_dssp             EEE--CCCHHHHHH--CCSCEE-EEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHH---HHHHHHHHT-TSSS
T ss_pred             eee-chhhHHHHHh--CCCcEE-EEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchh---HHHHHHHhCCccCC
Confidence            344 5677788887  344444 55555555444   444588888889988 5666666333   56899999999999


Q ss_pred             eEEEeeccccccccccC
Q 018973          198 HFSFYKSMEKIHEEEGI  214 (348)
Q Consensus       198 t~~~~~~g~~v~~~~G~  214 (348)
                      +++|+++|+.+....|.
T Consensus        85 aLvf~R~g~~lG~i~gi  101 (107)
T PF07449_consen   85 ALVFFRDGRYLGAIEGI  101 (107)
T ss_dssp             EEEEEETTEEEEEEESS
T ss_pred             eEEEEECCEEEEEecCe
Confidence            99999999998877764

This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=97.22  E-value=0.0047  Score=47.91  Aligned_cols=71  Identities=20%  Similarity=0.277  Sum_probs=45.8

Q ss_pred             hhHHHHhhhcccCCcEEEEEEe----CCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHH-HHHHhCCCCccceE
Q 018973          240 EDVEKLIDDHKVDQKLIVLDVG----LKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCM-QFLRDMNVVEVPTF  314 (348)
Q Consensus       240 ~~~~~~l~~~~~~~k~vvV~F~----a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~-~l~~~~~V~~~PTl  314 (348)
                      +.+++++.     ..+|+|+-.    .+||++|.+....|.+.      ++.|..+|++++++.+ ++.+..|...+|.+
T Consensus         3 ~~v~~~i~-----~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~v   71 (97)
T TIGR00365         3 ERIKEQIK-----ENPVVLYMKGTPQFPQCGFSARAVQILKAC------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQL   71 (97)
T ss_pred             HHHHHHhc-----cCCEEEEEccCCCCCCCchHHHHHHHHHHc------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEE
Confidence            33455554     345555543    28999999987777653      3667788887766544 34445677788887


Q ss_pred             EEEeCCeEE
Q 018973          315 LFIRDGQIR  323 (348)
Q Consensus       315 ~~~~~G~~v  323 (348)
                      .+  +|+.+
T Consensus        72 fi--~g~~i   78 (97)
T TIGR00365        72 YV--KGEFV   78 (97)
T ss_pred             EE--CCEEE
Confidence            54  77654

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=97.22  E-value=0.0022  Score=46.75  Aligned_cols=59  Identities=15%  Similarity=0.177  Sum_probs=42.5

Q ss_pred             EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchh-HHHHHHhCCCC-ccceEEEEeCCeEE
Q 018973          257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDS-CMQFLRDMNVV-EVPTFLFIRDGQIR  323 (348)
Q Consensus       257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~-~~~l~~~~~V~-~~PTl~~~~~G~~v  323 (348)
                      ++.|+.++|++|......|.+.      ++.|-.+|++++++ .+++.+..+.. ++|++++  +|+.+
T Consensus         2 i~ly~~~~Cp~C~~ak~~L~~~------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i--~g~~i   62 (75)
T cd03418           2 VEIYTKPNCPYCVRAKALLDKK------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI--GDVHI   62 (75)
T ss_pred             EEEEeCCCChHHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE--CCEEE
Confidence            5678899999999987777652      36777788887654 23455666776 8998754  77654

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=97.20  E-value=0.0036  Score=51.93  Aligned_cols=39  Identities=21%  Similarity=0.330  Sum_probs=31.5

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEE
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARM  291 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~v  291 (348)
                      +.+..++.|+.++|++|+.+.+.+.++..+++ ++.+...
T Consensus         4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~-~~~~~~~   42 (154)
T cd03023           4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP-DVRVVFK   42 (154)
T ss_pred             CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC-CceEEEE
Confidence            46789999999999999999999999887774 4444443

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=97.20  E-value=0.0033  Score=50.07  Aligned_cols=96  Identities=16%  Similarity=0.125  Sum_probs=69.7

Q ss_pred             hhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHH---hCCcEEEEEEECCCchhHHHHHHhCCCCc--cce
Q 018973          239 KEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQ---MAGTVVFARMNGDENDSCMQFLRDMNVVE--VPT  313 (348)
Q Consensus       239 ~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~---~~~~v~~~~vd~~~~~~~~~l~~~~~V~~--~PT  313 (348)
                      .+..+.+...    +.+..+.|+.+  ..-......+.+++++   +++++.|+.+|.++...   .++.||+..  +|.
T Consensus         6 ~e~~~~~~~~----~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~---~~~~fgl~~~~~P~   76 (111)
T cd03072           6 FENAEELTEE----GLPFLILFHDK--DDLESLKEFKQAVARQLISEKGAINFLTADGDKFRH---PLLHLGKTPADLPV   76 (111)
T ss_pred             cccHHHHhcC----CCCeEEEEecc--hHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhh---HHHHcCCCHhHCCE
Confidence            3445555543    34444455532  3346778889999999   99999999999999887   899999987  899


Q ss_pred             EEEEeCCe-EEEE-EeCC-ChHHHHHHHHHHhC
Q 018973          314 FLFIRDGQ-IRGR-YVGS-GKGELIGEILRYQG  343 (348)
Q Consensus       314 l~~~~~G~-~v~~-~~G~-~~~~L~~~l~~~~~  343 (348)
                      +.+..... .... ..+. +.+.|.+|+++++.
T Consensus        77 i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~  109 (111)
T cd03072          77 IAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHS  109 (111)
T ss_pred             EEEEcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence            98885432 2222 4455 88999999998864

It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=97.18  E-value=0.0024  Score=47.18  Aligned_cols=59  Identities=14%  Similarity=0.171  Sum_probs=42.0

Q ss_pred             EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchh-HHHHHHhCCCCccceEEEEeCCeEE
Q 018973          257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDS-CMQFLRDMNVVEVPTFLFIRDGQIR  323 (348)
Q Consensus       257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~-~~~l~~~~~V~~~PTl~~~~~G~~v  323 (348)
                      ++.|+.+||++|.+....|.+.      ++.|-.+|++..++ .+++.+..+...+|++++  +|+.+
T Consensus         1 v~ly~~~~Cp~C~~a~~~L~~~------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i--~g~~i   60 (79)
T TIGR02181         1 VTIYTKPYCPYCTRAKALLSSK------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI--GDVHV   60 (79)
T ss_pred             CEEEecCCChhHHHHHHHHHHc------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE--CCEEE
Confidence            3578899999999998777653      35667777776653 234555568889999754  77644

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=97.18  E-value=0.003  Score=47.14  Aligned_cols=69  Identities=14%  Similarity=0.231  Sum_probs=47.6

Q ss_pred             EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch--hHHHHHHhC-CCCccceEEEEeCCeEEEEEeCC-ChH
Q 018973          257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND--SCMQFLRDM-NVVEVPTFLFIRDGQIRGRYVGS-GKG  332 (348)
Q Consensus       257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~--~~~~l~~~~-~V~~~PTl~~~~~G~~v~~~~G~-~~~  332 (348)
                      ++.|..++||+|.+....|.+      ..+.|..++++..+  +.++..++. |.+++|++++  +|+.+   .|. +..
T Consensus         3 v~iyt~~~CPyC~~ak~~L~~------~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i--~~~~i---gg~~d~~   71 (80)
T COG0695           3 VTIYTKPGCPYCKRAKRLLDR------KGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI--GGKHV---GGCDDLD   71 (80)
T ss_pred             EEEEECCCCchHHHHHHHHHH------cCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE--CCEEE---eCcccHH
Confidence            567889999999998776663      23677777777665  555566666 7899999876  66533   343 555


Q ss_pred             HHHH
Q 018973          333 ELIG  336 (348)
Q Consensus       333 ~L~~  336 (348)
                      ++..
T Consensus        72 ~~~~   75 (80)
T COG0695          72 ALEA   75 (80)
T ss_pred             HHHh
Confidence            5543

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=97.16  E-value=0.0026  Score=46.31  Aligned_cols=60  Identities=17%  Similarity=0.217  Sum_probs=43.7

Q ss_pred             EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchh-HHHHHHhCCCCccceEEEEeCCeEEE
Q 018973          257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDS-CMQFLRDMNVVEVPTFLFIRDGQIRG  324 (348)
Q Consensus       257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~-~~~l~~~~~V~~~PTl~~~~~G~~v~  324 (348)
                      ++.|+.++|+.|++....|.+    .  .+.|..+|+++.++ ..++.+..+-..+|++++  +|+.++
T Consensus         3 v~ly~~~~C~~C~ka~~~L~~----~--gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i--~~~~iG   63 (73)
T cd03027           3 VTIYSRLGCEDCTAVRLFLRE----K--GLPYVEINIDIFPERKAELEERTGSSVVPQIFF--NEKLVG   63 (73)
T ss_pred             EEEEecCCChhHHHHHHHHHH----C--CCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEe
Confidence            567889999999998776665    2  37788888887664 234556667788999855  776554

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=97.15  E-value=0.0012  Score=60.48  Aligned_cols=51  Identities=12%  Similarity=0.016  Sum_probs=41.0

Q ss_pred             CCCEEEEEEe-CCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchhHHHHH
Q 018973          138 KNKLVVVEFA-ASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEKTKELC  188 (348)
Q Consensus       138 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~~~~l~  188 (348)
                      +++.+|+.|| ++||++|....+.|.++.+++.  ++.++.|.+|....+.+.+
T Consensus        97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~  150 (261)
T PTZ00137         97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWK  150 (261)
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHH
Confidence            5677888877 8999999999999999999984  5899999998743334443

>PHA03050 glutaredoxin; Provisional

Probab=97.13  E-value=0.0016  Score=51.58  Aligned_cols=63  Identities=17%  Similarity=0.135  Sum_probs=41.7

Q ss_pred             EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCc---hh-HHHHHHhCCCCccceEEEEeCCeEEE
Q 018973          257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN---DS-CMQFLRDMNVVEVPTFLFIRDGQIRG  324 (348)
Q Consensus       257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~---~~-~~~l~~~~~V~~~PTl~~~~~G~~v~  324 (348)
                      ++.|..+|||+|.+....|.+..-+.+   .|..+|+++.   .+ ..++.+.-|...+|++++  +|+.++
T Consensus        15 V~vys~~~CPyC~~ak~~L~~~~i~~~---~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI--~g~~iG   81 (108)
T PHA03050         15 VTIFVKFTCPFCRNALDILNKFSFKRG---AYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF--GKTSIG   81 (108)
T ss_pred             EEEEECCCChHHHHHHHHHHHcCCCcC---CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE--CCEEEe
Confidence            677999999999998777766532221   3556666642   22 223555568889999855  777653

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=97.12  E-value=0.0095  Score=50.00  Aligned_cols=84  Identities=25%  Similarity=0.345  Sum_probs=63.5

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHh--CCcEEEEEEECCCchhH------------------------------
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQM--AGTVVFARMNGDENDSC------------------------------  299 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~--~~~v~~~~vd~~~~~~~------------------------------  299 (348)
                      +.+.+|+.|+...|++|..+.+.+.++.+++  .+++.|+..+.......                              
T Consensus        11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (162)
T PF13462_consen   11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQE   90 (162)
T ss_dssp             TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCH
T ss_pred             CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence            4678999999999999999999999999998  67899888876321110                              


Q ss_pred             -----------------------------------HHHHHhCCCCccceEEEEeCCeEEEEEeCC-ChHHHHHHHHH
Q 018973          300 -----------------------------------MQFLRDMNVVEVPTFLFIRDGQIRGRYVGS-GKGELIGEILR  340 (348)
Q Consensus       300 -----------------------------------~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~  340 (348)
                                                         .+.+++.+|.++||+++  ||+.+   .|. +.++|.+.|++
T Consensus        91 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~~---~~~~~~~~l~~~Id~  162 (162)
T PF13462_consen   91 NFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKYV---VGPYTIEELKELIDK  162 (162)
T ss_dssp             STSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCEE---ETTTSHHHHHHHHHH
T ss_pred             ccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEEe---CCCCCHHHHHHHHcC
Confidence                                               00222368999999998  99874   666 99999998875

...

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.09  E-value=0.0019  Score=65.26  Aligned_cols=75  Identities=12%  Similarity=0.165  Sum_probs=61.2

Q ss_pred             HHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeecccc
Q 018973          128 EEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEK  207 (348)
Q Consensus       128 ~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~~  207 (348)
                      ++..+.+++-.+..-+-.|+.+.|++|......+.+++.+.+++..-.+|..+   .++++++|+|.++|++++  ||+.
T Consensus       106 ~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~---~~~~~~~~~v~~VP~~~i--~~~~  180 (515)
T TIGR03140       106 EGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGAL---FQDEVEALGIQGVPAVFL--NGEE  180 (515)
T ss_pred             HHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchh---CHHHHHhcCCcccCEEEE--CCcE
Confidence            44444455434556688999999999999999999999999999988899888   566999999999999976  5543

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK13599 putative peroxiredoxin; Provisional

Probab=97.08  E-value=0.0013  Score=58.66  Aligned_cols=51  Identities=12%  Similarity=0.057  Sum_probs=41.5

Q ss_pred             CCCE-EEEEEeCCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchhHHHHH
Q 018973          138 KNKL-VVVEFAASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEKTKELC  188 (348)
Q Consensus       138 ~~k~-vvV~F~a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~~~~l~  188 (348)
                      +++. ||+.|+++||++|....+.|.++.+++.  ++.++.|.+|....+...+
T Consensus        27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~   80 (215)
T PRK13599         27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWV   80 (215)
T ss_pred             CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH
Confidence            4565 5689999999999999999999999984  6999999999854443343

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=97.08  E-value=0.0022  Score=47.89  Aligned_cols=54  Identities=15%  Similarity=0.268  Sum_probs=41.8

Q ss_pred             EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCch--hHHHHHHHc-CcCCCCeEEE
Q 018973          143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESE--KTKELCERE-KIKKVPHFSF  201 (348)
Q Consensus       143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~--~~~~l~~~~-~V~~~Pt~~~  201 (348)
                      ++.|..++|+.|++....|++     .++.|..+|+++.+  +..+..++. |.+.+|++++
T Consensus         3 v~iyt~~~CPyC~~ak~~L~~-----~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i   59 (80)
T COG0695           3 VTIYTKPGCPYCKRAKRLLDR-----KGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI   59 (80)
T ss_pred             EEEEECCCCchHHHHHHHHHH-----cCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence            677889999999999988884     45777777766654  444566666 8999999877

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=97.07  E-value=0.002  Score=47.66  Aligned_cols=59  Identities=14%  Similarity=0.187  Sum_probs=42.6

Q ss_pred             EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCch-hHHHHHHHcCcCCCCeEEEeeccccc
Q 018973          143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESE-KTKELCEREKIKKVPHFSFYKSMEKI  208 (348)
Q Consensus       143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~-~~~~l~~~~~V~~~Pt~~~~~~g~~v  208 (348)
                      |+.|+.+||+.|++....|++.     ++.|-.+|++..+ ...++.+..|...+|++.+  +|+.+
T Consensus         1 v~ly~~~~Cp~C~~a~~~L~~~-----~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i--~g~~i   60 (79)
T TIGR02181         1 VTIYTKPYCPYCTRAKALLSSK-----GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI--GDVHV   60 (79)
T ss_pred             CEEEecCCChhHHHHHHHHHHc-----CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE--CCEEE
Confidence            4678899999999999999863     4666667776644 2345566678899999744  55543

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=97.03  E-value=0.0035  Score=45.67  Aligned_cols=59  Identities=19%  Similarity=0.263  Sum_probs=44.3

Q ss_pred             EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchh-HHHHHHHcCcCCCCeEEEeeccccc
Q 018973          143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEK-TKELCEREKIKKVPHFSFYKSMEKI  208 (348)
Q Consensus       143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~-~~~l~~~~~V~~~Pt~~~~~~g~~v  208 (348)
                      |+.|+.+||+.|++....|++     .++.|-.+|+++.+. ..++.+..+-..+|++++  +|+.+
T Consensus         3 v~ly~~~~C~~C~ka~~~L~~-----~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i--~~~~i   62 (73)
T cd03027           3 VTIYSRLGCEDCTAVRLFLRE-----KGLPYVEINIDIFPERKAELEERTGSSVVPQIFF--NEKLV   62 (73)
T ss_pred             EEEEecCCChhHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEE
Confidence            567889999999999988887     457778888876442 345666678889999854  55544

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=97.02  E-value=0.006  Score=46.55  Aligned_cols=63  Identities=22%  Similarity=0.266  Sum_probs=41.8

Q ss_pred             CcEEEEEEeC----CCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHH-HHHhCCCCccceEEEEeCCeEE
Q 018973          253 QKLIVLDVGL----KHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQ-FLRDMNVVEVPTFLFIRDGQIR  323 (348)
Q Consensus       253 ~k~vvV~F~a----~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~-l~~~~~V~~~PTl~~~~~G~~v  323 (348)
                      +.+|+|+-..    +||++|.+....|.+.      ++.|..+|+++.++.++ +.+..|...+|+++  .+|+.+
T Consensus         7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~------~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vf--i~g~~i   74 (90)
T cd03028           7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQL------GVDFGTFDILEDEEVRQGLKEYSNWPTFPQLY--VNGELV   74 (90)
T ss_pred             cCCEEEEEcCCCCCCCCcHHHHHHHHHHHc------CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEE--ECCEEE
Confidence            3455554432    7999999987666653      36677778777665433 44445788899874  477654

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=96.98  E-value=0.0018  Score=48.44  Aligned_cols=77  Identities=8%  Similarity=0.094  Sum_probs=57.2

Q ss_pred             EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCC--eEEEEEeCC-ChHH
Q 018973          257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDG--QIRGRYVGS-GKGE  333 (348)
Q Consensus       257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G--~~v~~~~G~-~~~~  333 (348)
                      ++.|+.+.|.-|..+...|.++....  .+.+-.+|+++++.   +.++|+. .+|.+.+-..+  .......+. +.+.
T Consensus         2 l~l~~k~~C~LC~~a~~~L~~~~~~~--~~~l~~vDI~~d~~---l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~   75 (81)
T PF05768_consen    2 LTLYTKPGCHLCDEAKEILEEVAAEF--PFELEEVDIDEDPE---LFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQ   75 (81)
T ss_dssp             EEEEE-SSSHHHHHHHHHHHHCCTTS--TCEEEEEETTTTHH---HHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHH
T ss_pred             EEEEcCCCCChHHHHHHHHHHHHhhc--CceEEEEECCCCHH---HHHHhcC-CCCEEEEcCcccccccceeCCCCCHHH
Confidence            67899999999999988888876554  38899999998887   9999995 69997764310  112334566 9999


Q ss_pred             HHHHHH
Q 018973          334 LIGEIL  339 (348)
Q Consensus       334 L~~~l~  339 (348)
                      |.++|+
T Consensus        76 L~~~L~   81 (81)
T PF05768_consen   76 LRAWLE   81 (81)
T ss_dssp             HHHHHH
T ss_pred             HHHHhC
Confidence            998875

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.

>PRK13191 putative peroxiredoxin; Provisional

Probab=96.97  E-value=0.002  Score=57.60  Aligned_cols=50  Identities=12%  Similarity=0.072  Sum_probs=40.1

Q ss_pred             CCCEEE-EEEeCCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchhHHHH
Q 018973          138 KNKLVV-VEFAASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEKTKEL  187 (348)
Q Consensus       138 ~~k~vv-V~F~a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~~~~l  187 (348)
                      +++.+| +.|+++||+.|....+.|.++++++.  ++.++.|.+|....+.+.
T Consensus        32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw   84 (215)
T PRK13191         32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEW   84 (215)
T ss_pred             CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHH
Confidence            456555 58899999999999999999999984  699999999975443333

>PRK10638 glutaredoxin 3; Provisional

Probab=96.95  E-value=0.0038  Score=46.78  Aligned_cols=60  Identities=17%  Similarity=0.192  Sum_probs=44.4

Q ss_pred             EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCch-hHHHHHHHcCcCCCCeEEEeecccccc
Q 018973          143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESE-KTKELCEREKIKKVPHFSFYKSMEKIH  209 (348)
Q Consensus       143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~-~~~~l~~~~~V~~~Pt~~~~~~g~~v~  209 (348)
                      ++.|..+||+.|++....|++.     ++.+..+|+++.+ ...++.+..|...+|++.+  +|+.+.
T Consensus         4 v~ly~~~~Cp~C~~a~~~L~~~-----gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~--~g~~ig   64 (83)
T PRK10638          4 VEIYTKATCPFCHRAKALLNSK-----GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI--DAQHIG   64 (83)
T ss_pred             EEEEECCCChhHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEe
Confidence            5678889999999999888863     5667778887654 3346667778899998744  565443

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=96.94  E-value=0.0075  Score=51.75  Aligned_cols=80  Identities=16%  Similarity=0.301  Sum_probs=67.3

Q ss_pred             CCCceEecCHHHHHHHHHhcCCCE-EEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcC-
Q 018973          118 DERVKKVHSIEEFDEALRLAKNKL-VVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIK-  194 (348)
Q Consensus       118 ~~~v~~v~s~~~f~~~l~~~~~k~-vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~-  194 (348)
                      -+.+.++ |.+++..+..  .+++ +++.|..........+...+.++++++.+ +.|+.+|++.   .+++++.+|+. 
T Consensus        76 ~P~v~~~-t~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~---~~~~~~~~~i~~  149 (184)
T PF13848_consen   76 FPLVPEL-TPENFEKLFS--SPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADD---FPRLLKYFGIDE  149 (184)
T ss_dssp             STSCEEE-STTHHHHHHS--TSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTT---THHHHHHTTTTT
T ss_pred             ccccccc-chhhHHHHhc--CCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHH---hHHHHHHcCCCC
Confidence            3456666 7888988886  4555 88888777788889999999999999988 9999999997   55699999998 


Q ss_pred             -CCCeEEEee
Q 018973          195 -KVPHFSFYK  203 (348)
Q Consensus       195 -~~Pt~~~~~  203 (348)
                       .+|+++++.
T Consensus       150 ~~~P~~vi~~  159 (184)
T PF13848_consen  150 DDLPALVIFD  159 (184)
T ss_dssp             SSSSEEEEEE
T ss_pred             ccCCEEEEEE
Confidence             999999987

...

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=96.94  E-value=0.0031  Score=57.03  Aligned_cols=68  Identities=12%  Similarity=0.071  Sum_probs=49.5

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEE--eCCC-----------------------------------
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILV--MGDE-----------------------------------  180 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~v--d~d~-----------------------------------  180 (348)
                      .++.+++.|.-+.|+.|+++.+.++++.+.  ++.+..+  ....                                   
T Consensus       106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~--~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~  183 (232)
T PRK10877        106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL--GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPAS  183 (232)
T ss_pred             CCCEEEEEEECCCChHHHHHHHHHHHHhcC--CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCccc
Confidence            368899999999999999999999887652  2333222  2100                                   


Q ss_pred             ----chhHHHHHHHcCcCCCCeEEEeeccccc
Q 018973          181 ----SEKTKELCEREKIKKVPHFSFYKSMEKI  208 (348)
Q Consensus       181 ----~~~~~~l~~~~~V~~~Pt~~~~~~g~~v  208 (348)
                          .+++.++++++||+++||++ +.||+.+
T Consensus       184 c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~~  214 (232)
T PRK10877        184 CDVDIADHYALGVQFGVQGTPAIV-LSNGTLV  214 (232)
T ss_pred             ccchHHHhHHHHHHcCCccccEEE-EcCCeEe
Confidence                02456889999999999998 6678765

>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]

Probab=96.93  E-value=0.0031  Score=54.47  Aligned_cols=101  Identities=11%  Similarity=0.241  Sum_probs=74.7

Q ss_pred             cceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCc
Q 018973          231 SAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVE  310 (348)
Q Consensus       231 ~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~  310 (348)
                      ..|+.+...+...+..+..  .+-.|||..|...-+.|.-+...|..++..|+ .++|+++-.+..-      ..|-=..
T Consensus        91 G~V~~ISg~dyv~EVT~As--~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp-~iKFVki~at~cI------pNYPe~n  161 (240)
T KOG3170|consen   91 GEVFPISGPDYVKEVTKAS--EGVWVVVHLYKQGVPLCALLSHHLQSLACKFP-QIKFVKIPATTCI------PNYPESN  161 (240)
T ss_pred             cceeeccchHHHHHHHhcc--CccEEEEEeeccccHHHHHHHHHHHHHhhcCC-cceEEeccccccc------CCCcccC
Confidence            3466666656566555543  57889999999999999999999999999996 5999998755421      1222367


Q ss_pred             cceEEEEeCCeEEEEEeC------C--ChHHHHHHHHH
Q 018973          311 VPTFLFIRDGQIRGRYVG------S--GKGELIGEILR  340 (348)
Q Consensus       311 ~PTl~~~~~G~~v~~~~G------~--~~~~L~~~l~~  340 (348)
                      +||+++|..|.+...+.|      .  +.+++..+|-+
T Consensus       162 lPTl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~q  199 (240)
T KOG3170|consen  162 LPTLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQ  199 (240)
T ss_pred             CCeEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHh
Confidence            999999999988776654      3  56677766654

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=96.93  E-value=0.0041  Score=54.65  Aligned_cols=66  Identities=14%  Similarity=0.055  Sum_probs=46.8

Q ss_pred             CCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcE--EEEEeCCC------------------------------------
Q 018973          139 NKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVE--FILVMGDE------------------------------------  180 (348)
Q Consensus       139 ~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~--f~~vd~d~------------------------------------  180 (348)
                      ++..++.|+-+.|++|+++.+.+.+   ...++.  ++-+....                                    
T Consensus        77 ~~~~i~~f~D~~Cp~C~~~~~~l~~---~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~~  153 (197)
T cd03020          77 GKRVVYVFTDPDCPYCRKLEKELKP---NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAAS  153 (197)
T ss_pred             CCEEEEEEECCCCccHHHHHHHHhh---ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCccc
Confidence            6899999999999999999998876   222322  22222111                                    


Q ss_pred             ----chhHHHHHHHcCcCCCCeEEEeeccccc
Q 018973          181 ----SEKTKELCEREKIKKVPHFSFYKSMEKI  208 (348)
Q Consensus       181 ----~~~~~~l~~~~~V~~~Pt~~~~~~g~~v  208 (348)
                          .+++.++++++||+++||++ +.+|+.+
T Consensus       154 ~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~~  184 (197)
T cd03020         154 CDNPVAANLALGRQLGVNGTPTIV-LADGRVV  184 (197)
T ss_pred             cCchHHHHHHHHHHcCCCcccEEE-ECCCeEe
Confidence                02346889999999999997 7777654

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>PRK10824 glutaredoxin-4; Provisional

Probab=96.91  E-value=0.003  Score=50.57  Aligned_cols=72  Identities=21%  Similarity=0.256  Sum_probs=42.2

Q ss_pred             hhHHHHhhhcccCCcEEEEEEeC----CCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhC-CCCccceE
Q 018973          240 EDVEKLIDDHKVDQKLIVLDVGL----KHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDM-NVVEVPTF  314 (348)
Q Consensus       240 ~~~~~~l~~~~~~~k~vvV~F~a----~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~-~V~~~PTl  314 (348)
                      +..++.++     ..+|+|+--+    |||++|.+....|.++.      +.|..+|+++.++.++-.+++ |-..+|  
T Consensus         6 ~~v~~~I~-----~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~------i~~~~idi~~d~~~~~~l~~~sg~~TVP--   72 (115)
T PRK10824          6 EKIQRQIA-----ENPILLYMKGSPKLPSCGFSAQAVQALSACG------ERFAYVDILQNPDIRAELPKYANWPTFP--   72 (115)
T ss_pred             HHHHHHHh-----cCCEEEEECCCCCCCCCchHHHHHHHHHHcC------CCceEEEecCCHHHHHHHHHHhCCCCCC--
Confidence            34455554     3455554443    69999999877776642      445556777666544434333 344444  


Q ss_pred             EEEeCCeEEE
Q 018973          315 LFIRDGQIRG  324 (348)
Q Consensus       315 ~~~~~G~~v~  324 (348)
                      .+|-+|+.++
T Consensus        73 QIFI~G~~IG   82 (115)
T PRK10824         73 QLWVDGELVG   82 (115)
T ss_pred             eEEECCEEEc
Confidence            4455888764

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=96.89  E-value=0.0043  Score=47.34  Aligned_cols=63  Identities=22%  Similarity=0.172  Sum_probs=42.9

Q ss_pred             CCEEEEEEeC----CCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhH-HHHHHHcCcCCCCeEEEeeccccc
Q 018973          139 NKLVVVEFAA----SRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKT-KELCEREKIKKVPHFSFYKSMEKI  208 (348)
Q Consensus       139 ~k~vvV~F~a----~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~-~~l~~~~~V~~~Pt~~~~~~g~~v  208 (348)
                      +.+|+|.-..    +||+.|++....|++.     ++.|..+|+++.++. .++.+..|-+.+|++.  .+|+.+
T Consensus         7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~-----~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vf--i~g~~i   74 (90)
T cd03028           7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQL-----GVDFGTFDILEDEEVRQGLKEYSNWPTFPQLY--VNGELV   74 (90)
T ss_pred             cCCEEEEEcCCCCCCCCcHHHHHHHHHHHc-----CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEE--ECCEEE
Confidence            4556665432    7999999999888774     366777777665433 4455566888999974  366544

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>PRK10638 glutaredoxin 3; Provisional

Probab=96.85  E-value=0.0062  Score=45.56  Aligned_cols=60  Identities=18%  Similarity=0.239  Sum_probs=43.4

Q ss_pred             EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchh-HHHHHHhCCCCccceEEEEeCCeEEE
Q 018973          257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDS-CMQFLRDMNVVEVPTFLFIRDGQIRG  324 (348)
Q Consensus       257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~-~~~l~~~~~V~~~PTl~~~~~G~~v~  324 (348)
                      ++.|..+||++|++....|.+.      .+.+..+|++++++ ..++.+..+...+|++++  +|+.++
T Consensus         4 v~ly~~~~Cp~C~~a~~~L~~~------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~--~g~~ig   64 (83)
T PRK10638          4 VEIYTKATCPFCHRAKALLNSK------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI--DAQHIG   64 (83)
T ss_pred             EEEEECCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEe
Confidence            5678889999999987776652      36677788877653 234666678889998744  776653

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=96.79  E-value=0.006  Score=45.99  Aligned_cols=62  Identities=19%  Similarity=0.156  Sum_probs=45.4

Q ss_pred             EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchh-----------------------------HHHHHHhCC
Q 018973          257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDS-----------------------------CMQFLRDMN  307 (348)
Q Consensus       257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~-----------------------------~~~l~~~~~  307 (348)
                      +..|+.+.|+.|..+.+.+.++.....+++.+......-...                             ..++++++|
T Consensus         1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g   80 (98)
T cd02972           1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG   80 (98)
T ss_pred             CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence            467999999999999999999876666666666554321110                             123566789


Q ss_pred             CCccceEEEEe
Q 018973          308 VVEVPTFLFIR  318 (348)
Q Consensus       308 V~~~PTl~~~~  318 (348)
                      +.++||+++..
T Consensus        81 ~~g~Pt~v~~~   91 (98)
T cd02972          81 VTGTPTFVVNG   91 (98)
T ss_pred             CCCCCEEEECC
Confidence            99999999854

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=96.79  E-value=0.011  Score=45.86  Aligned_cols=71  Identities=17%  Similarity=0.173  Sum_probs=46.9

Q ss_pred             HHHHHHHHhcCCCEEEEEEe----CCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhH-HHHHHHcCcCCCCeEEEe
Q 018973          128 EEFDEALRLAKNKLVVVEFA----ASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKT-KELCEREKIKKVPHFSFY  202 (348)
Q Consensus       128 ~~f~~~l~~~~~k~vvV~F~----a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~-~~l~~~~~V~~~Pt~~~~  202 (348)
                      +..+++++   +..|+|+-.    ++||+.|++....|.++     ++.|..+|+++.++. .++.+..|...+|.+.+ 
T Consensus         3 ~~v~~~i~---~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~-----~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi-   73 (97)
T TIGR00365         3 ERIKEQIK---ENPVVLYMKGTPQFPQCGFSARAVQILKAC-----GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV-   73 (97)
T ss_pred             HHHHHHhc---cCCEEEEEccCCCCCCCchHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE-
Confidence            44555564   345555443    38999999999888774     466778887664432 34555667788998754 


Q ss_pred             eccccc
Q 018973          203 KSMEKI  208 (348)
Q Consensus       203 ~~g~~v  208 (348)
                       +|+.+
T Consensus        74 -~g~~i   78 (97)
T TIGR00365        74 -KGEFV   78 (97)
T ss_pred             -CCEEE
Confidence             56543

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI

Probab=96.74  E-value=0.012  Score=46.93  Aligned_cols=73  Identities=10%  Similarity=0.019  Sum_probs=55.5

Q ss_pred             hhhhhhhhHHHHHHHHhC-CcEEEEEEECCCchhHHHHHHhCCCCc----cceEEEEeCCeEEEEEeC-C-ChHHHHHHH
Q 018973          266 GPCVKVYPTVIKLSRQMA-GTVVFARMNGDENDSCMQFLRDMNVVE----VPTFLFIRDGQIRGRYVG-S-GKGELIGEI  338 (348)
Q Consensus       266 ~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~~~~~~~l~~~~~V~~----~PTl~~~~~G~~v~~~~G-~-~~~~L~~~l  338 (348)
                      ..-......+.++++.++ +++.|+.+|.++...   .++.||+..    +|++.++..+.......+ . +.+.|.+|+
T Consensus        31 ~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~---~l~~fgl~~~~~~~P~~~i~~~~~~KY~~~~~~~t~e~i~~F~  107 (111)
T cd03073          31 KGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSH---ELEEFGLDFSGGEKPVVAIRTAKGKKYVMEEEFSDVDALEEFL  107 (111)
T ss_pred             hHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHH---HHHHcCCCcccCCCCEEEEEeCCCCccCCCcccCCHHHHHHHH
Confidence            445677888999999999 699999999998776   889999984    999988763322222222 2 668899998


Q ss_pred             HHH
Q 018973          339 LRY  341 (348)
Q Consensus       339 ~~~  341 (348)
                      +++
T Consensus       108 ~~f  110 (111)
T cd03073         108 EDF  110 (111)
T ss_pred             HHh
Confidence            875

They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei

>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

Probab=96.72  E-value=0.011  Score=50.53  Aligned_cols=41  Identities=17%  Similarity=0.291  Sum_probs=34.2

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEE
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN  292 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd  292 (348)
                      +.++.++.|+...|++|+.+.+.+.++.+++++++.+..+.
T Consensus        14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~   54 (178)
T cd03019          14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVP   54 (178)
T ss_pred             CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcC
Confidence            36888999999999999999999999988887666665443

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.

>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.71  E-value=0.012  Score=54.41  Aligned_cols=112  Identities=13%  Similarity=0.306  Sum_probs=82.3

Q ss_pred             CccceeecCChhhHHHHhhhcccCCcEEEEEEeC----CCChhhhhhhhHHHHHHHHhC------C--cEEEEEEECCCc
Q 018973          229 SHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGL----KHCGPCVKVYPTVIKLSRQMA------G--TVVFARMNGDEN  296 (348)
Q Consensus       229 ~~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a----~wC~~C~~~~p~l~~la~~~~------~--~v~~~~vd~~~~  296 (348)
                      ....++.. +.+.+..+++.. ..+-.++++|.|    ..|.-|.....++.-++..+.      +  ++-|..||.++.
T Consensus        38 s~~~VI~~-n~d~~~~~v~~~-prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~  115 (331)
T KOG2603|consen   38 SESGVIRM-NDDKFSKFVRPP-PRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDES  115 (331)
T ss_pred             CCCCeEEe-cCcchhhhccCC-CCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEecccc
Confidence            44556666 457788888742 346678888887    469999999999988887762      2  578999999998


Q ss_pred             hhHHHHHHhCCCCccceEEEEe--CCeEEE--EE----eCCChHHHHHHHHHHhCCC
Q 018973          297 DSCMQFLRDMNVVEVPTFLFIR--DGQIRG--RY----VGSGKGELIGEILRYQGVR  345 (348)
Q Consensus       297 ~~~~~l~~~~~V~~~PTl~~~~--~G~~v~--~~----~G~~~~~L~~~l~~~~~~~  345 (348)
                      ++   +.++|+++.+|++.+|.  .|++..  .+    .|...+.+.+++++...++
T Consensus       116 p~---~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv~  169 (331)
T KOG2603|consen  116 PQ---VFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKVN  169 (331)
T ss_pred             HH---HHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhhe
Confidence            87   99999999999999993  343331  11    2335788888888775543

>PRK13189 peroxiredoxin; Provisional

Probab=96.70  E-value=0.0038  Score=56.04  Aligned_cols=51  Identities=14%  Similarity=0.073  Sum_probs=40.0

Q ss_pred             CCC-EEEEEEeCCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchhHHHHH
Q 018973          138 KNK-LVVVEFAASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEKTKELC  188 (348)
Q Consensus       138 ~~k-~vvV~F~a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~~~~l~  188 (348)
                      +++ .||+.|+++||+.|....+.|.++++++.  ++.++.|.+|....+.+.+
T Consensus        34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~   87 (222)
T PRK13189         34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWV   87 (222)
T ss_pred             CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHH
Confidence            466 45567889999999999999999999884  5899999998754333333

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=96.69  E-value=0.0074  Score=45.48  Aligned_cols=61  Identities=15%  Similarity=0.059  Sum_probs=44.5

Q ss_pred             EEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeC--CCch---------------------------hHHHHHHHcC
Q 018973          143 VVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMG--DESE---------------------------KTKELCEREK  192 (348)
Q Consensus       143 vV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~--d~~~---------------------------~~~~l~~~~~  192 (348)
                      |+.|+.+.|+.|..+.+.++++.+.+++ +.+..+.+  ....                           +...+++++|
T Consensus         1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g   80 (98)
T cd02972           1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG   80 (98)
T ss_pred             CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence            4689999999999999999999765544 55554443  2210                           1235678899


Q ss_pred             cCCCCeEEEee
Q 018973          193 IKKVPHFSFYK  203 (348)
Q Consensus       193 V~~~Pt~~~~~  203 (348)
                      +.++||+++..
T Consensus        81 ~~g~Pt~v~~~   91 (98)
T cd02972          81 VTGTPTFVVNG   91 (98)
T ss_pred             CCCCCEEEECC
Confidence            99999998864

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=96.56  E-value=0.016  Score=44.27  Aligned_cols=73  Identities=26%  Similarity=0.366  Sum_probs=56.6

Q ss_pred             ceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC-CcEEEEEeCCCchhHHHHHHHcCcCCCCeE
Q 018973          121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN-DVEFILVMGDESEKTKELCEREKIKKVPHF  199 (348)
Q Consensus       121 v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~-~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~  199 (348)
                      +.++.+.+++++.+.  .++++||-|+.++|+   .....+.++|+.+. ++.|+.+.-      +++++++++. .|++
T Consensus         1 ~~~i~s~~~l~~~~~--~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~~------~~~~~~~~~~-~~~i   68 (97)
T cd02981           1 VKELTSKEELEKFLD--KDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTSD------KEVAKKLKVK-PGSV   68 (97)
T ss_pred             CeecCCHHHHHHHhc--cCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEECh------HHHHHHcCCC-CCce
Confidence            356778888998776  688899999999987   46678888998886 588877762      2477778876 4899


Q ss_pred             EEeecc
Q 018973          200 SFYKSM  205 (348)
Q Consensus       200 ~~~~~g  205 (348)
                      ++|+..
T Consensus        69 ~l~~~~   74 (97)
T cd02981          69 VLFKPF   74 (97)
T ss_pred             EEeCCc
Confidence            988764

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai

>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

Probab=96.53  E-value=0.011  Score=50.51  Aligned_cols=37  Identities=19%  Similarity=0.242  Sum_probs=31.9

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEE
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFI  174 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~  174 (348)
                      .+++.|+.|+...|++|+.+.+.+.++.+++++ +.|.
T Consensus        14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~   51 (178)
T cd03019          14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFE   51 (178)
T ss_pred             CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEE
Confidence            468899999999999999999999999998865 5443

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.

>PRK10824 glutaredoxin-4; Provisional

Probab=96.42  E-value=0.015  Score=46.52  Aligned_cols=72  Identities=13%  Similarity=0.096  Sum_probs=43.0

Q ss_pred             HHHHHHHHHhcCCCEEEEEEeC----CCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhH-HHHHHHcCcCCCCeEEE
Q 018973          127 IEEFDEALRLAKNKLVVVEFAA----SRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKT-KELCEREKIKKVPHFSF  201 (348)
Q Consensus       127 ~~~f~~~l~~~~~k~vvV~F~a----~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~-~~l~~~~~V~~~Pt~~~  201 (348)
                      .+..+++++   +.+|||.--.    |||+.|++....|.++.     +.|..+|+++.++. ..+.+.-|-+.+|.+.+
T Consensus         5 ~~~v~~~I~---~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~-----i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI   76 (115)
T PRK10824          5 IEKIQRQIA---ENPILLYMKGSPKLPSCGFSAQAVQALSACG-----ERFAYVDILQNPDIRAELPKYANWPTFPQLWV   76 (115)
T ss_pred             HHHHHHHHh---cCCEEEEECCCCCCCCCchHHHHHHHHHHcC-----CCceEEEecCCHHHHHHHHHHhCCCCCCeEEE
Confidence            344555664   4555554443    69999999998888763     44445566654332 23334446667777554


Q ss_pred             eeccccc
Q 018973          202 YKSMEKI  208 (348)
Q Consensus       202 ~~~g~~v  208 (348)
                        +|+-+
T Consensus        77 --~G~~I   81 (115)
T PRK10824         77 --DGELV   81 (115)
T ss_pred             --CCEEE
Confidence              66555

>PRK10954 periplasmic protein disulfide isomerase I; Provisional

Probab=96.39  E-value=0.024  Score=50.18  Aligned_cols=41  Identities=10%  Similarity=0.125  Sum_probs=32.7

Q ss_pred             CcEEEEEEeCCCChhhhhhhhHH---HHHHHHhCCcEEEEEEEC
Q 018973          253 QKLIVLDVGLKHCGPCVKVYPTV---IKLSRQMAGTVVFARMNG  293 (348)
Q Consensus       253 ~k~vvV~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~  293 (348)
                      +++.||.|+.-.|++|..+.+.+   ..+.+.+++++.++++.+
T Consensus        37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~   80 (207)
T PRK10954         37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHV   80 (207)
T ss_pred             CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEecc
Confidence            45668999999999999999866   788888876766666554

>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=96.38  E-value=0.03  Score=47.18  Aligned_cols=90  Identities=18%  Similarity=0.160  Sum_probs=63.6

Q ss_pred             CCcEEEEEEe-CCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchhHHH------------------HHHhCCCCc-
Q 018973          252 DQKLIVLDVG-LKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDSCMQ------------------FLRDMNVVE-  310 (348)
Q Consensus       252 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~~~~------------------l~~~~~V~~-  310 (348)
                      .+++|||+|| ..+++.|-...-.|.+...++.. ++.++.|..|.....+.                  +++.||+.. 
T Consensus        29 ~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~~  108 (157)
T COG1225          29 RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWGE  108 (157)
T ss_pred             cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCcccc
Confidence            5779999999 67888898888888887777743 47788888775444333                  555566632 


Q ss_pred             -----------cc-eEEEEeCCeEEEEEeCC----ChHHHHHHHHHH
Q 018973          311 -----------VP-TFLFIRDGQIRGRYVGS----GKGELIGEILRY  341 (348)
Q Consensus       311 -----------~P-Tl~~~~~G~~v~~~~G~----~~~~L~~~l~~~  341 (348)
                                 .+ ||++.++|++.......    ..+++.+.|+++
T Consensus       109 k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~l  155 (157)
T COG1225         109 KKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKKL  155 (157)
T ss_pred             cccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHHh
Confidence                       24 78888999998877544    355677666654

>PRK10954 periplasmic protein disulfide isomerase I; Provisional

Probab=96.35  E-value=0.012  Score=52.06  Aligned_cols=40  Identities=8%  Similarity=0.031  Sum_probs=31.8

Q ss_pred             CCEEEEEEeCCCCHHHHhhhhHH---HHHHHHcCC-cEEEEEeC
Q 018973          139 NKLVVVEFAASRSLDSSKIYPFM---VDLSRQCND-VEFILVMG  178 (348)
Q Consensus       139 ~k~vvV~F~a~wC~~C~~~~p~l---~~la~~~~~-v~f~~vd~  178 (348)
                      +++.||+|+.-.|++|+.+.+.+   +.+.+.+++ +.|+.+.+
T Consensus        37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~   80 (207)
T PRK10954         37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHV   80 (207)
T ss_pred             CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEecc
Confidence            46779999999999999999876   778888874 66665553

>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=96.34  E-value=0.03  Score=43.14  Aligned_cols=87  Identities=18%  Similarity=0.347  Sum_probs=63.6

Q ss_pred             ceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcC----C
Q 018973          121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIK----K  195 (348)
Q Consensus       121 v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~----~  195 (348)
                      +..|.+..+|..+|.  ..+-|+|.|..+--..-.. ...+.+.|++..+ -.++.|||.+.+ .+.||+++.|.    -
T Consensus         3 ie~i~d~KdfKKLLR--Tr~NVLvLy~ks~k~a~~~-Lk~~~~~A~~vkG~gT~~~vdCgd~e-~kKLCKKlKv~~~~kp   78 (112)
T cd03067           3 IEDISDHKDFKKLLR--TRNNVLVLYSKSAKSAEAL-LKLLSDVAQAVKGQGTIAWIDCGDSE-SRKLCKKLKVDPSSKP   78 (112)
T ss_pred             cccccchHHHHHHHh--hcCcEEEEEecchhhHHHH-HHHHHHHHHHhcCceeEEEEecCChH-HHHHHHHHccCCCCCC
Confidence            457788999999997  4566788887665433333 3467777877766 789999998755 68999999999    5


Q ss_pred             CCe-EEEeecccccccc
Q 018973          196 VPH-FSFYKSMEKIHEE  211 (348)
Q Consensus       196 ~Pt-~~~~~~g~~v~~~  211 (348)
                      -|. +.-|++|.--.++
T Consensus        79 ~~~~LkHYKdG~fHkdY   95 (112)
T cd03067          79 KPVELKHYKDGDFHTEY   95 (112)
T ss_pred             CcchhhcccCCCccccc
Confidence            665 5677888655444

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=96.26  E-value=0.011  Score=48.98  Aligned_cols=41  Identities=20%  Similarity=0.208  Sum_probs=35.2

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeC
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMG  178 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~  178 (348)
                      ..+++|+.|+..+|++|+.+.|.+.++..+++++.+...+.
T Consensus         4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~   44 (154)
T cd03023           4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFKEF   44 (154)
T ss_pred             CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEeC
Confidence            46789999999999999999999999988888776666554

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=96.23  E-value=0.04  Score=42.50  Aligned_cols=99  Identities=10%  Similarity=0.231  Sum_probs=74.0

Q ss_pred             ecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCC----c
Q 018973          235 QLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVV----E  310 (348)
Q Consensus       235 ~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~----~  310 (348)
                      .+.+..+|.+++..    ..-|+|.|..+. ..-......+.++++...++-+++.|||...+ .+.||+++.|.    -
T Consensus         5 ~i~d~KdfKKLLRT----r~NVLvLy~ks~-k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e-~kKLCKKlKv~~~~kp   78 (112)
T cd03067           5 DISDHKDFKKLLRT----RNNVLVLYSKSA-KSAEALLKLLSDVAQAVKGQGTIAWIDCGDSE-SRKLCKKLKVDPSSKP   78 (112)
T ss_pred             cccchHHHHHHHhh----cCcEEEEEecch-hhHHHHHHHHHHHHHHhcCceeEEEEecCChH-HHHHHHHHccCCCCCC
Confidence            45667889999885    355666666543 33344456788899999888999999998644 46799999998    5


Q ss_pred             cc-eEEEEeCCeEEEEEeCC-ChHHHHHHHH
Q 018973          311 VP-TFLFIRDGQIRGRYVGS-GKGELIGEIL  339 (348)
Q Consensus       311 ~P-Tl~~~~~G~~v~~~~G~-~~~~L~~~l~  339 (348)
                      -| ++.-|++|..-..|... +...+..|+.
T Consensus        79 ~~~~LkHYKdG~fHkdYdR~~t~kSmv~Flr  109 (112)
T cd03067          79 KPVELKHYKDGDFHTEYNRQLTFKSMVAFLR  109 (112)
T ss_pred             CcchhhcccCCCccccccchhhHHHHHHHhh
Confidence            56 57778999877777766 7888888875

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.

>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional

Probab=96.22  E-value=0.014  Score=57.25  Aligned_cols=59  Identities=20%  Similarity=0.259  Sum_probs=43.8

Q ss_pred             EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHH---------cCcCCCCeEEEeeccccc
Q 018973          143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCER---------EKIKKVPHFSFYKSMEKI  208 (348)
Q Consensus       143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~---------~~V~~~Pt~~~~~~g~~v  208 (348)
                      |+.|..+||++|++.+..|.+     .++.|-.+|+++.+...++.++         .|.+.+|++.+  +|+.+
T Consensus         4 V~vys~~~Cp~C~~aK~~L~~-----~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~i   71 (410)
T PRK12759          4 VRIYTKTNCPFCDLAKSWFGA-----NDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVHI   71 (410)
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-----CCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCEEE
Confidence            778999999999999988887     4688888888875543333322         47889999866  45443

>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=96.19  E-value=0.052  Score=42.29  Aligned_cols=95  Identities=7%  Similarity=0.074  Sum_probs=64.6

Q ss_pred             eeecCChhhHHHHhh-hcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCcc
Q 018973          233 VVQLHSKEDVEKLID-DHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEV  311 (348)
Q Consensus       233 v~~~~s~~~~~~~l~-~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~  311 (348)
                      +..+.+.+++++++. .    +..++|-|+..--.+   ....+.+++..+++.+.|+.....   +   +++.+++. .
T Consensus         2 v~~i~~~~~~e~~~~~~----~~~~Vvg~f~~~~~~---~~~~F~~vA~~~R~d~~F~~~~~~---~---~~~~~~~~-~   67 (102)
T cd03066           2 VEIINSERELQAFENIE----DDIKLIGYFKSEDSE---HYKAFEEAAEEFHPYIKFFATFDS---K---VAKKLGLK-M   67 (102)
T ss_pred             ceEcCCHHHHHHHhccc----CCeEEEEEECCCCCH---HHHHHHHHHHhhhcCCEEEEECcH---H---HHHHcCCC-C
Confidence            345667888998886 4    345555555543333   445688899998777888655432   3   77788765 7


Q ss_pred             ceEEEEeC-CeEEEEE-eCC-ChHHHHHHHHHH
Q 018973          312 PTFLFIRD-GQIRGRY-VGS-GKGELIGEILRY  341 (348)
Q Consensus       312 PTl~~~~~-G~~v~~~-~G~-~~~~L~~~l~~~  341 (348)
                      |+++++++ .+....| .|. +.+.|.+||...
T Consensus        68 ~~i~l~~~~~e~~~~y~~g~~~~~~l~~fi~~~  100 (102)
T cd03066          68 NEVDFYEPFMEEPVTIPDKPYSEEELVDFVEEH  100 (102)
T ss_pred             CcEEEeCCCCCCCcccCCCCCCHHHHHHHHHHh
Confidence            99999865 4434456 667 899999999864

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=96.02  E-value=0.04  Score=50.43  Aligned_cols=76  Identities=11%  Similarity=0.169  Sum_probs=50.0

Q ss_pred             CCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeC---C-Cc---------------------------------
Q 018973          139 NKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMG---D-ES---------------------------------  181 (348)
Q Consensus       139 ~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~---d-~~---------------------------------  181 (348)
                      .+.+|+.|.=+.|+.|+++.+.+.++.+. +++.+..+..   . ++                                 
T Consensus       117 ak~~I~vFtDp~CpyC~kl~~~l~~~~~~-g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~~  195 (251)
T PRK11657        117 APRIVYVFADPNCPYCKQFWQQARPWVDS-GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPPA  195 (251)
T ss_pred             CCeEEEEEECCCChhHHHHHHHHHHHhhc-CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCccc
Confidence            57889999999999999999988876654 2333322221   0 00                                 


Q ss_pred             ----------hhHHHHHHHcCcCCCCeEEEeeccccccccccCC
Q 018973          182 ----------EKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIG  215 (348)
Q Consensus       182 ----------~~~~~l~~~~~V~~~Pt~~~~~~g~~v~~~~G~~  215 (348)
                                +++.++++++||+++|++++-.+...+..+.|..
T Consensus       196 ~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~  239 (251)
T PRK11657        196 SIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQVVGLP  239 (251)
T ss_pred             cCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCC
Confidence                      1234578889999999998875322333455543

>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=96.00  E-value=0.021  Score=48.10  Aligned_cols=61  Identities=16%  Similarity=0.142  Sum_probs=50.9

Q ss_pred             HHhcCCCEEEEEEe-CCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchhHHHHHHHcCcC
Q 018973          134 LRLAKNKLVVVEFA-ASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEKTKELCEREKIK  194 (348)
Q Consensus       134 l~~~~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~~~~l~~~~~V~  194 (348)
                      |.+.+++.||++|| ..+++.|-...-.|.+...++.  ++.++.|..|....++.++++++.+
T Consensus        25 Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~   88 (157)
T COG1225          25 LSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLT   88 (157)
T ss_pred             hHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC
Confidence            34447889999999 5789999998888888888775  4899999999888788899998877

>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]

Probab=95.89  E-value=0.018  Score=58.63  Aligned_cols=83  Identities=17%  Similarity=0.256  Sum_probs=61.8

Q ss_pred             ChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhH-H--HHHHHHhCCcEEEEEEECCCchhHHHHHH----hC-CCC
Q 018973          238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPT-V--IKLSRQMAGTVVFARMNGDENDSCMQFLR----DM-NVV  309 (348)
Q Consensus       238 s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~-l--~~la~~~~~~v~~~~vd~~~~~~~~~l~~----~~-~V~  309 (348)
                      +.+.|.+.-.    .+||++|.++.+||..|..|... +  .++++-+...+.-++||.++.+++-.+..    .. |-.
T Consensus        32 ~~eAf~~A~~----edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~G  107 (667)
T COG1331          32 GEEAFAKAKE----EDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQG  107 (667)
T ss_pred             CHHHHHHHHH----hCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCC
Confidence            4566666654    48999999999999999998653 2  56677776678899999999988333222    21 356


Q ss_pred             ccc-eEEEEeCCeEEE
Q 018973          310 EVP-TFLFIRDGQIRG  324 (348)
Q Consensus       310 ~~P-Tl~~~~~G~~v~  324 (348)
                      ++| |+++-.+|+...
T Consensus       108 GWPLtVfLTPd~kPFf  123 (667)
T COG1331         108 GWPLTVFLTPDGKPFF  123 (667)
T ss_pred             CCceeEEECCCCceee
Confidence            899 788888999874

>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]

Probab=95.80  E-value=0.17  Score=40.54  Aligned_cols=101  Identities=15%  Similarity=0.225  Sum_probs=65.0

Q ss_pred             hhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHH-HHh--CCcEEEEEEECCCch--hHHHHHHhCCC--Ccc
Q 018973          239 KEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLS-RQM--AGTVVFARMNGDEND--SCMQFLRDMNV--VEV  311 (348)
Q Consensus       239 ~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la-~~~--~~~v~~~~vd~~~~~--~~~~l~~~~~V--~~~  311 (348)
                      .-.|++++..    .+.++|.|=...  |=-.-...+.+++ +..  .+++.++.|-+.+..  +.++|+++|+|  ..+
T Consensus        11 ~~tFdKvi~k----f~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~f   84 (126)
T PF07912_consen   11 ELTFDKVIPK----FKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKEDF   84 (126)
T ss_dssp             TTHHHHHGGG----SSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-
T ss_pred             ceehhheecc----CceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcccC
Confidence            3568888875    588999996542  2233344577777 333  245888888775432  34569999999  678


Q ss_pred             ceEEEEe-CCeEEEEE--eCC-ChHHHHHHHHHHhCCC
Q 018973          312 PTFLFIR-DGQIRGRY--VGS-GKGELIGEILRYQGVR  345 (348)
Q Consensus       312 PTl~~~~-~G~~v~~~--~G~-~~~~L~~~l~~~~~~~  345 (348)
                      |.+.+|. +.+..-++  .|. +.++|++|+.++.++.
T Consensus        85 Pv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~~y  122 (126)
T PF07912_consen   85 PVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTGLY  122 (126)
T ss_dssp             SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS--
T ss_pred             CEEEEecCCCCCCccCCccCCccHHHHHHHHHhCCCee
Confidence            9998886 44444556  676 8999999999886654

The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.

>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol

Probab=95.67  E-value=0.025  Score=47.74  Aligned_cols=72  Identities=18%  Similarity=0.142  Sum_probs=50.7

Q ss_pred             CEEEEEEeCCCCHHHHhh-hhHHHHHHHHcC--Cc-EEEEEeCCCchhHHHHHHHcCcC-CCCeEEEeecccccccccc
Q 018973          140 KLVVVEFAASRSLDSSKI-YPFMVDLSRQCN--DV-EFILVMGDESEKTKELCEREKIK-KVPHFSFYKSMEKIHEEEG  213 (348)
Q Consensus       140 k~vvV~F~a~wC~~C~~~-~p~l~~la~~~~--~v-~f~~vd~d~~~~~~~l~~~~~V~-~~Pt~~~~~~g~~v~~~~G  213 (348)
                      ..||+.|.+.||+.|... .+.|.+..+++.  ++ .++.|..|.....++.++++++. .+|  ++-..+..+.+..|
T Consensus        31 ~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~~~~f~--lLsD~~~~~~~~yg  107 (155)
T cd03013          31 KVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGAKDKIR--FLADGNGEFTKALG  107 (155)
T ss_pred             cEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCCCCcEE--EEECCCHHHHHHcC
Confidence            445555557899999998 999999888874  56 69999999877778889998883 343  33333344444444

The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases

>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional

Probab=95.64  E-value=0.035  Score=54.48  Aligned_cols=59  Identities=14%  Similarity=0.152  Sum_probs=42.2

Q ss_pred             EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHh---------CCCCccceEEEEeCCeEE
Q 018973          257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRD---------MNVVEVPTFLFIRDGQIR  323 (348)
Q Consensus       257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~---------~~V~~~PTl~~~~~G~~v  323 (348)
                      |+.|..+||++|.+.+..|.+.      ++.|..+|+++.+...++.++         .|...+|++++  +|+.+
T Consensus         4 V~vys~~~Cp~C~~aK~~L~~~------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~i   71 (410)
T PRK12759          4 VRIYTKTNCPFCDLAKSWFGAN------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVHI   71 (410)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHC------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCEEE
Confidence            6788999999999986666652      477888899876643333333         46788999866  66544

>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=95.43  E-value=0.11  Score=40.63  Aligned_cols=93  Identities=15%  Similarity=0.236  Sum_probs=62.8

Q ss_pred             eecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccce
Q 018973          234 VQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPT  313 (348)
Q Consensus       234 ~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PT  313 (348)
                      ..+.+.+++++++..    ++.++|-|+..--.   .....+.+++..+++++.|+.....   .   +++++++  .|+
T Consensus         3 ~~i~s~~~l~~f~~~----~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~~~---~---~~~~~~~--~~~   67 (104)
T cd03069           3 VELRTEAEFEKFLSD----DDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTSDK---Q---LLEKYGY--GEG   67 (104)
T ss_pred             cccCCHHHHHHHhcc----CCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEChH---H---HHHhcCC--CCc
Confidence            456678888888764    45566666654333   3455688889888777888665533   3   7888988  688


Q ss_pred             EEEEe------C-CeEEEEEeCC-ChHHHHHHHHHH
Q 018973          314 FLFIR------D-GQIRGRYVGS-GKGELIGEILRY  341 (348)
Q Consensus       314 l~~~~------~-G~~v~~~~G~-~~~~L~~~l~~~  341 (348)
                      +++|+      + ......|.|. +.++|.+||...
T Consensus        68 ivl~~p~~~~~k~de~~~~y~g~~~~~~l~~fi~~~  103 (104)
T cd03069          68 VVLFRPPRLSNKFEDSSVKFDGDLDSSKIKKFIREN  103 (104)
T ss_pred             eEEEechhhhcccCcccccccCcCCHHHHHHHHHhh
Confidence            88882      1 1222346787 888999999764

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.

>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=95.33  E-value=0.094  Score=41.13  Aligned_cols=71  Identities=17%  Similarity=0.290  Sum_probs=44.1

Q ss_pred             hHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch-hHHHHHH-hCCCCccceEEEEe
Q 018973          241 DVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND-SCMQFLR-DMNVVEVPTFLFIR  318 (348)
Q Consensus       241 ~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~-~~~~l~~-~~~V~~~PTl~~~~  318 (348)
                      ..++.+.+     .+ +|.|..+||+.|..+...|.+    ++...+++.+|.+++. +++.... --+.+.+|.+++  
T Consensus         6 ~v~~~i~~-----~~-VVifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--   73 (104)
T KOG1752|consen    6 KVRKMISE-----NP-VVIFSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--   73 (104)
T ss_pred             HHHHHhhc-----CC-EEEEECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--
Confidence            34555543     34 456899999999997666655    5445667777766443 3332222 234567887665  


Q ss_pred             CCeEE
Q 018973          319 DGQIR  323 (348)
Q Consensus       319 ~G~~v  323 (348)
                      +|+.+
T Consensus        74 ~Gk~i   78 (104)
T KOG1752|consen   74 GGKFI   78 (104)
T ss_pred             CCEEE
Confidence            88776

>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1

Probab=95.31  E-value=0.086  Score=47.31  Aligned_cols=90  Identities=19%  Similarity=0.304  Sum_probs=63.5

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCC------------------chh-------HHHHHHhC
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDE------------------NDS-------CMQFLRDM  306 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~------------------~~~-------~~~l~~~~  306 (348)
                      .++|.||.|++-.||+-+.-...+++++++|.+.+.|+.|.+.|                  ...       ++.+.+++
T Consensus       101 g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~EAHpsDgW~~~~~~~~i~qh~sledR~~aA~~l~~~~  180 (237)
T PF00837_consen  101 GNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEEAHPSDGWAFGNNPYEIPQHRSLEDRLRAAKLLKEEF  180 (237)
T ss_pred             CCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhhhCcCCCccCCCCceeecCCCCHHHHHHHHHHHHhhC
Confidence            68999999999999999999999999999998766666665432                  111       11122211


Q ss_pred             ----------------CCCccc-eEEEEeCCeEEEEEe-CC---ChHHHHHHHHHH
Q 018973          307 ----------------NVVEVP-TFLFIRDGQIRGRYV-GS---GKGELIGEILRY  341 (348)
Q Consensus       307 ----------------~V~~~P-Tl~~~~~G~~v~~~~-G~---~~~~L~~~l~~~  341 (348)
                                      .-..+| .+.++++|+++..-. |.   +.++++++|+++
T Consensus       181 ~~~pi~vD~mdN~~~~~YgA~PeRlyIi~~gkv~Y~Gg~GP~~y~~~e~r~~L~~~  236 (237)
T PF00837_consen  181 PQCPIVVDTMDNNFNKAYGALPERLYIIQDGKVVYKGGPGPFGYSPEELREWLEKY  236 (237)
T ss_pred             CCCCEEEEccCCHHHHHhCCCcceEEEEECCEEEEeCCCCCCcCCHHHHHHHHHhc
Confidence                            013578 577779999875421 22   689999999875

97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process

>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=95.25  E-value=0.065  Score=39.89  Aligned_cols=56  Identities=14%  Similarity=0.159  Sum_probs=45.4

Q ss_pred             EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEee
Q 018973          143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYK  203 (348)
Q Consensus       143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~  203 (348)
                      |+.|..+.|.-|..+...|.++..+.+ +.+-.||++++   +++..+|+. .+|.+.+-.
T Consensus         2 l~l~~k~~C~LC~~a~~~L~~~~~~~~-~~l~~vDI~~d---~~l~~~Y~~-~IPVl~~~~   57 (81)
T PF05768_consen    2 LTLYTKPGCHLCDEAKEILEEVAAEFP-FELEEVDIDED---PELFEKYGY-RIPVLHIDG   57 (81)
T ss_dssp             EEEEE-SSSHHHHHHHHHHHHCCTTST-CEEEEEETTTT---HHHHHHSCT-STSEEEETT
T ss_pred             EEEEcCCCCChHHHHHHHHHHHHhhcC-ceEEEEECCCC---HHHHHHhcC-CCCEEEEcC
Confidence            678999999999999999988665544 89999999984   459999996 699977643

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.

>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.14  E-value=0.087  Score=48.81  Aligned_cols=83  Identities=17%  Similarity=0.279  Sum_probs=67.4

Q ss_pred             CCCceEecCHHHHHHHHHhc-CCCEEEEEEeCC----CCHHHHhhhhHHHHHHHHcC---------CcEEEEEeCCCchh
Q 018973          118 DERVKKVHSIEEFDEALRLA-KNKLVVVEFAAS----RSLDSSKIYPFMVDLSRQCN---------DVEFILVMGDESEK  183 (348)
Q Consensus       118 ~~~v~~v~s~~~f~~~l~~~-~~k~vvV~F~a~----wC~~C~~~~p~l~~la~~~~---------~v~f~~vd~d~~~~  183 (348)
                      +..|..+ +.+.|...+... ++-.++|+|.|.    .|.-|+..+..+.-+++.+.         .+-|..||.|+   
T Consensus        39 ~~~VI~~-n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e---  114 (331)
T KOG2603|consen   39 ESGVIRM-NDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDE---  114 (331)
T ss_pred             CCCeEEe-cCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccc---
Confidence            3457777 788888887742 377899999985    59999999999999988641         16899999999   


Q ss_pred             HHHHHHHcCcCCCCeEEEeec
Q 018973          184 TKELCEREKIKKVPHFSFYKS  204 (348)
Q Consensus       184 ~~~l~~~~~V~~~Pt~~~~~~  204 (348)
                      .+++-+.+++..+|++..|..
T Consensus       115 ~p~~Fq~l~ln~~P~l~~f~P  135 (331)
T KOG2603|consen  115 SPQVFQQLNLNNVPHLVLFSP  135 (331)
T ss_pred             cHHHHHHhcccCCCeEEEeCC
Confidence            556999999999999999953

>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=94.64  E-value=0.4  Score=39.21  Aligned_cols=82  Identities=12%  Similarity=0.189  Sum_probs=60.5

Q ss_pred             CCceEecCHHHHHHHHHhcCCCEEEEEEeCC--CCHH-H-HhhhhHHHHHHHHcCC--cEEEEEeCCCchhHHHHHHHcC
Q 018973          119 ERVKKVHSIEEFDEALRLAKNKLVVVEFAAS--RSLD-S-SKIYPFMVDLSRQCND--VEFILVMGDESEKTKELCEREK  192 (348)
Q Consensus       119 ~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~--wC~~-C-~~~~p~l~~la~~~~~--v~f~~vd~d~~~~~~~l~~~~~  192 (348)
                      ..++++.+.+.+++...+  +..-+|-|.-.  .|.+ + ..+...|.++|++|.+  +.|+.+|.++   ...+.+.||
T Consensus         2 ~~~~~l~~~~~~~~~C~~--~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~---~~~~~~~fg   76 (130)
T cd02983           2 PEIIELTSEDVFEETCEE--KQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGA---QLDLEEALN   76 (130)
T ss_pred             CceEEecCHHHHHhhccC--CCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcc---cHHHHHHcC
Confidence            367888888888887753  45555555432  2333 3 4567889999999976  7999999999   444899999


Q ss_pred             cC--CCCeEEEeecc
Q 018973          193 IK--KVPHFSFYKSM  205 (348)
Q Consensus       193 V~--~~Pt~~~~~~g  205 (348)
                      |.  .+|+++++...
T Consensus        77 l~~~~~P~v~i~~~~   91 (130)
T cd02983          77 IGGFGYPAMVAINFR   91 (130)
T ss_pred             CCccCCCEEEEEecc
Confidence            96  49999988754

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.

>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=94.62  E-value=0.19  Score=39.88  Aligned_cols=72  Identities=15%  Similarity=0.188  Sum_probs=53.9

Q ss_pred             CHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHH---cCC-cEEEEEeCCCchhHHHHHHHcCcCC--CCeE
Q 018973          126 SIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQ---CND-VEFILVMGDESEKTKELCEREKIKK--VPHF  199 (348)
Q Consensus       126 s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~---~~~-v~f~~vd~d~~~~~~~l~~~~~V~~--~Pt~  199 (348)
                      |.+.......  .+.+..+.|+  .-..-..+...+.++|++   +.+ +.|+.+|.++.   ....+.+|++.  +|.+
T Consensus         5 t~e~~~~~~~--~~~~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~---~~~~~~fgl~~~~~P~i   77 (111)
T cd03072           5 TFENAEELTE--EGLPFLILFH--DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKF---RHPLLHLGKTPADLPVI   77 (111)
T ss_pred             ccccHHHHhc--CCCCeEEEEe--cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHh---hhHHHHcCCCHhHCCEE
Confidence            5666666665  4555555566  222346788999999999   987 99999999984   34889999997  8998


Q ss_pred             EEeec
Q 018973          200 SFYKS  204 (348)
Q Consensus       200 ~~~~~  204 (348)
                      .+...
T Consensus        78 ~i~~~   82 (111)
T cd03072          78 AIDSF   82 (111)
T ss_pred             EEEcc
Confidence            88754

It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.

>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=94.56  E-value=0.097  Score=41.06  Aligned_cols=72  Identities=17%  Similarity=0.152  Sum_probs=43.1

Q ss_pred             HHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCch--hHHHHHHHcCcCCCCeEEEeecc
Q 018973          128 EEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESE--KTKELCEREKIKKVPHFSFYKSM  205 (348)
Q Consensus       128 ~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~--~~~~l~~~~~V~~~Pt~~~~~~g  205 (348)
                      +.+++.+.   ..+ +|.|..+||+.|.++...|.+   .-....++.+|-++..  -...+.+--+-+.+|.+.+  +|
T Consensus         5 ~~v~~~i~---~~~-VVifSKs~C~~c~~~k~ll~~---~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~G   75 (104)
T KOG1752|consen    5 AKVRKMIS---ENP-VVIFSKSSCPYCHRAKELLSD---LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GG   75 (104)
T ss_pred             HHHHHHhh---cCC-EEEEECCcCchHHHHHHHHHh---CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CC
Confidence            34555554   333 556899999999998777666   1122567777755432  1122333345678888765  66


Q ss_pred             ccc
Q 018973          206 EKI  208 (348)
Q Consensus       206 ~~v  208 (348)
                      +-+
T Consensus        76 k~i   78 (104)
T KOG1752|consen   76 KFI   78 (104)
T ss_pred             EEE
Confidence            544

>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain

Probab=94.51  E-value=1.2  Score=36.65  Aligned_cols=93  Identities=14%  Similarity=0.251  Sum_probs=62.4

Q ss_pred             ccCCcEEEEEEeCCCCh----hhhhhhhHHHHHHHHhCCcEEEEEEECCCchh---------------HHHHHHhCCCCc
Q 018973          250 KVDQKLIVLDVGLKHCG----PCVKVYPTVIKLSRQMAGTVVFARMNGDENDS---------------CMQFLRDMNVVE  310 (348)
Q Consensus       250 ~~~~k~vvV~F~a~wC~----~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~---------------~~~l~~~~~V~~  310 (348)
                      ....|+.+|+...+.-.    .|+...- =+.+.+-+++++.+..-|+...+.               ..+.++.++...
T Consensus        18 ~~e~K~L~VYLH~~~~~~t~~Fc~~~L~-se~Vi~fl~~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~~   96 (136)
T cd02990          18 ARDRKLLAIYLHHDESVLSNVFCSQLLC-AESIVQYLSQNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTDQ   96 (136)
T ss_pred             hhhcceEEEEEcCCCCccHHHHHHHHhc-CHHHHHHHHcCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcCC
Confidence            44689999999988664    4554420 033333334567777778765431               334667788999


Q ss_pred             cceEEEE-eC-C--eEEEEEeCC-ChHHHHHHHHHHhC
Q 018973          311 VPTFLFI-RD-G--QIRGRYVGS-GKGELIGEILRYQG  343 (348)
Q Consensus       311 ~PTl~~~-~~-G--~~v~~~~G~-~~~~L~~~l~~~~~  343 (348)
                      +|.+.++ +. +  .++.++.|. +.++|...|.....
T Consensus        97 fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~ve  134 (136)
T cd02990          97 LPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAME  134 (136)
T ss_pred             CCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHHh
Confidence            9987666 22 2  677899999 99999998876543

FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear

>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]

Probab=94.38  E-value=0.16  Score=40.78  Aligned_cols=79  Identities=22%  Similarity=0.241  Sum_probs=53.0

Q ss_pred             eEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHH-HH---cCCcEEEEEeCCCc--hhHHHHHHHcCc--
Q 018973          122 KKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLS-RQ---CNDVEFILVMGDES--EKTKELCEREKI--  193 (348)
Q Consensus       122 ~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la-~~---~~~v~f~~vd~d~~--~~~~~l~~~~~V--  193 (348)
                      +.+ +.=.|+.++.  +.+.++|.|=...  |--.-...+.+++ +.   -+++.++.|-+.+.  .++.+|+++|+|  
T Consensus         7 v~L-D~~tFdKvi~--kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~k   81 (126)
T PF07912_consen    7 VPL-DELTFDKVIP--KFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDK   81 (126)
T ss_dssp             EEE-STTHHHHHGG--GSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SC
T ss_pred             eec-cceehhheec--cCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCc
Confidence            344 5678999998  5799999995432  2233455677777 33   24588888886642  246789999999  


Q ss_pred             CCCCeEEEeecc
Q 018973          194 KKVPHFSFYKSM  205 (348)
Q Consensus       194 ~~~Pt~~~~~~g  205 (348)
                      +.+|.+.+|.+|
T Consensus        82 e~fPv~~LF~~~   93 (126)
T PF07912_consen   82 EDFPVIYLFVGD   93 (126)
T ss_dssp             CC-SEEEEEESS
T ss_pred             ccCCEEEEecCC
Confidence            678999999843

The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.

>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol

Probab=94.06  E-value=0.13  Score=43.27  Aligned_cols=44  Identities=11%  Similarity=0.192  Sum_probs=31.0

Q ss_pred             cEEEEEEeCCCChhhhhh-hhHHHHHHHHhCC-cE-EEEEEECCCch
Q 018973          254 KLIVLDVGLKHCGPCVKV-YPTVIKLSRQMAG-TV-VFARMNGDEND  297 (348)
Q Consensus       254 k~vvV~F~a~wC~~C~~~-~p~l~~la~~~~~-~v-~~~~vd~~~~~  297 (348)
                      ..+++.|.+.||+.|... .+.|.+...++.. .+ .++.+..+...
T Consensus        31 ~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~   77 (155)
T cd03013          31 KVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPF   77 (155)
T ss_pred             cEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHH
Confidence            344444458999999998 8999888888742 24 47777766433

The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases

>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]

Probab=93.94  E-value=0.67  Score=38.75  Aligned_cols=91  Identities=15%  Similarity=0.250  Sum_probs=59.8

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCc-EEEEEEECCC--------chhHHHHHHh-CCCC------------
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGT-VVFARMNGDE--------NDSCMQFLRD-MNVV------------  309 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~~~--------~~~~~~l~~~-~~V~------------  309 (348)
                      .+++++|.=.|+-|+.-- ....|+.|.+.|+++ +.++..-+++        +.++.++|+. |||+            
T Consensus        24 ~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~~~YgVtFp~f~Ki~VnG~  102 (162)
T COG0386          24 KGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKFCQLNYGVTFPMFSKIDVNGK  102 (162)
T ss_pred             CCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHHHHhccCceeeeeeEEeecCC
Confidence            477777777888887654 334567777777543 5555554432        2234445543 2221            


Q ss_pred             ------------------------ccceEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973          310 ------------------------EVPTFLFIRDGQIRGRYVGS-GKGELIGEILRYQG  343 (348)
Q Consensus       310 ------------------------~~PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~  343 (348)
                                              .+=-+++.++|+++.|+... .++++...|+++++
T Consensus       103 ~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL~  161 (162)
T COG0386         103 NAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKLLA  161 (162)
T ss_pred             CCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHHHHHHHhc
Confidence                                    12347888999999999988 88888888888764

>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]

Probab=93.66  E-value=0.59  Score=41.44  Aligned_cols=92  Identities=18%  Similarity=0.328  Sum_probs=62.8

Q ss_pred             CCcEEEEEEeCCCChh-hhhhhhHHHHHHHHhC----CcEEEEEEECCCc--------------------------hhHH
Q 018973          252 DQKLIVLDVGLKHCGP-CVKVYPTVIKLSRQMA----GTVVFARMNGDEN--------------------------DSCM  300 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~-C~~~~p~l~~la~~~~----~~v~~~~vd~~~~--------------------------~~~~  300 (348)
                      .+++++|+|.-+.|+. |-.+...+.++.++..    .++.++.|.+|-.                          +..+
T Consensus        66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~~~~~ltg~~~~~~  145 (207)
T COG1999          66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDPRWIGLTGTPEQIE  145 (207)
T ss_pred             CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccCCCCeeeeeCCHHHHH
Confidence            6899999999999986 9888888877777764    2354444444321                          1234


Q ss_pred             HHHHhCCCCc--cc-----------e---EEEEeCCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973          301 QFLRDMNVVE--VP-----------T---FLFIRDGQIRGRYVGS-GKGELIGEILRYQG  343 (348)
Q Consensus       301 ~l~~~~~V~~--~P-----------T---l~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~  343 (348)
                      +++++|+|..  +|           +   +++..+|++...+.+. +++++.+.|++++.
T Consensus       146 ~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~~  205 (207)
T COG1999         146 EVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLLK  205 (207)
T ss_pred             HHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHhh
Confidence            4666666652  11           1   2333689999888877 88889998888754

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=93.64  E-value=0.64  Score=38.87  Aligned_cols=60  Identities=17%  Similarity=0.254  Sum_probs=39.7

Q ss_pred             EEEEeCC------CChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHH-HHHHhCCC----CccceEEEEeCCeEEE
Q 018973          257 VLDVGLK------HCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCM-QFLRDMNV----VEVPTFLFIRDGQIRG  324 (348)
Q Consensus       257 vV~F~a~------wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~-~l~~~~~V----~~~PTl~~~~~G~~v~  324 (348)
                      |+.|.++      +|++|..+...|..+      .+.|-.+|++..++.. +|.+.++-    ..+|.+.+  +|+.++
T Consensus         2 VvlYttsl~giR~t~~~C~~ak~iL~~~------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI--~G~~IG   72 (147)
T cd03031           2 VVLYTTSLRGVRKTFEDCNNVRAILESF------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV--DGRYLG   72 (147)
T ss_pred             EEEEEcCCcCCCCcChhHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE--CCEEEe
Confidence            3445566      899999987777653      4778889998765422 35555554    56776655  776553

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=93.23  E-value=0.24  Score=41.29  Aligned_cols=43  Identities=16%  Similarity=0.166  Sum_probs=35.8

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHc--CC-cEEEEEeCCC
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQC--ND-VEFILVMGDE  180 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~--~~-v~f~~vd~d~  180 (348)
                      ..+.+|+.|+..-|++|+.+.+.+.++.+++  ++ +.|+.+++-.
T Consensus        11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~   56 (162)
T PF13462_consen   11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPL   56 (162)
T ss_dssp             TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSS
T ss_pred             CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccc
Confidence            4688999999999999999999999999998  44 8888887643

...

>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=93.10  E-value=0.42  Score=36.87  Aligned_cols=65  Identities=20%  Similarity=0.347  Sum_probs=42.9

Q ss_pred             CcEEEEEEeC---CCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceE-EEEeCCeEEE
Q 018973          253 QKLIVLDVGL---KHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTF-LFIRDGQIRG  324 (348)
Q Consensus       253 ~k~vvV~F~a---~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl-~~~~~G~~v~  324 (348)
                      ++.++.+=++   |-|+...+.    .++...++. +.|..+|+-.++++++=.++|  ..+||+ .+|-+|+.++
T Consensus        15 n~VvLFMKGtp~~P~CGFS~~~----vqiL~~~g~-v~~~~vnVL~d~eiR~~lk~~--s~WPT~PQLyi~GEfvG   83 (105)
T COG0278          15 NPVVLFMKGTPEFPQCGFSAQA----VQILSACGV-VDFAYVDVLQDPEIRQGLKEY--SNWPTFPQLYVNGEFVG   83 (105)
T ss_pred             CceEEEecCCCCCCCCCccHHH----HHHHHHcCC-cceeEEeeccCHHHHhccHhh--cCCCCCceeeECCEEec
Confidence            3444444444   455555554    444444443 789999999888866655555  689998 8889998774

>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C

Probab=92.70  E-value=0.4  Score=41.35  Aligned_cols=33  Identities=18%  Similarity=0.228  Sum_probs=25.9

Q ss_pred             EEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEE
Q 018973          259 DVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARM  291 (348)
Q Consensus       259 ~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~v  291 (348)
                      +|..|.|+.|-...|.+.++..++++++.+-.+
T Consensus         2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i   34 (176)
T PF13743_consen    2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFI   34 (176)
T ss_dssp             EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEE
T ss_pred             eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEE
Confidence            688999999999999999999999877665544

>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI

Probab=92.29  E-value=0.78  Score=36.37  Aligned_cols=50  Identities=6%  Similarity=0.066  Sum_probs=41.3

Q ss_pred             HHHHhhhhHHHHHHHHcC-C-cEEEEEeCCCchhHHHHHHHcCcCC----CCeEEEeec
Q 018973          152 LDSSKIYPFMVDLSRQCN-D-VEFILVMGDESEKTKELCEREKIKK----VPHFSFYKS  204 (348)
Q Consensus       152 ~~C~~~~p~l~~la~~~~-~-v~f~~vd~d~~~~~~~l~~~~~V~~----~Pt~~~~~~  204 (348)
                      ..-..+...+.++|++++ + +.|+.+|.++   .....+.||++.    .|++.++..
T Consensus        31 ~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~---~~~~l~~fgl~~~~~~~P~~~i~~~   86 (111)
T cd03073          31 KGTNYWRNRVLKVAKDFPDRKLNFAVADKED---FSHELEEFGLDFSGGEKPVVAIRTA   86 (111)
T ss_pred             hHHHHHHHHHHHHHHHCcCCeEEEEEEcHHH---HHHHHHHcCCCcccCCCCEEEEEeC
Confidence            445678899999999998 5 9999999887   344888999984    999988753

They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=92.00  E-value=0.77  Score=38.40  Aligned_cols=59  Identities=17%  Similarity=0.119  Sum_probs=40.6

Q ss_pred             EEEEeCC------CCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchh-HHHHHHHcCc----CCCCeEEEeeccccc
Q 018973          143 VVEFAAS------RSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEK-TKELCEREKI----KKVPHFSFYKSMEKI  208 (348)
Q Consensus       143 vV~F~a~------wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~-~~~l~~~~~V----~~~Pt~~~~~~g~~v  208 (348)
                      ||.|+++      +|+.|+++...|+.+     ++.|-.+|++.+++ ..+|.+..+-    ..+|.+.+  +|+-+
T Consensus         2 VvlYttsl~giR~t~~~C~~ak~iL~~~-----~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI--~G~~I   71 (147)
T cd03031           2 VVLYTTSLRGVRKTFEDCNNVRAILESF-----RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV--DGRYL   71 (147)
T ss_pred             EEEEEcCCcCCCCcChhHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE--CCEEE
Confidence            4566667      999999999888874     57888899876543 3355555554    67787655  45433

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]

Probab=91.71  E-value=0.94  Score=41.07  Aligned_cols=91  Identities=16%  Similarity=0.325  Sum_probs=60.3

Q ss_pred             CCcEEEEEEeCCCChh-hhhhhhHHHHHHHHhCCc------EEEEEEECCC-----------------------chhHHH
Q 018973          252 DQKLIVLDVGLKHCGP-CVKVYPTVIKLSRQMAGT------VVFARMNGDE-----------------------NDSCMQ  301 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~-C~~~~p~l~~la~~~~~~------v~~~~vd~~~-----------------------~~~~~~  301 (348)
                      .++.++++|+-+.||. |-.....+.++.++...+      -.|+.+|-+.                       .++.++
T Consensus       138 ~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~  217 (280)
T KOG2792|consen  138 LGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQ  217 (280)
T ss_pred             ccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHH
Confidence            4899999999999997 877766666666654321      1466776432                       223445


Q ss_pred             HHHhCCCCcc--c-----------eEEEE---eCCeEEEEEeCC-ChHHHHHHHHHHh
Q 018973          302 FLRDMNVVEV--P-----------TFLFI---RDGQIRGRYVGS-GKGELIGEILRYQ  342 (348)
Q Consensus       302 l~~~~~V~~~--P-----------Tl~~~---~~G~~v~~~~G~-~~~~L~~~l~~~~  342 (348)
                      +|++|.|.--  |           |+++|   .+|+.+..+.-. +++++.+.|.++.
T Consensus       218 vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v  275 (280)
T KOG2792|consen  218 VAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHV  275 (280)
T ss_pred             HHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHH
Confidence            6777766321  1           34444   689888766555 8999999888764

>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=91.39  E-value=2.7  Score=32.97  Aligned_cols=95  Identities=12%  Similarity=0.142  Sum_probs=58.3

Q ss_pred             eeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccc
Q 018973          233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVP  312 (348)
Q Consensus       233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~P  312 (348)
                      +..+.+.+++++++..   .++.++|-|+..--.   .....+.+++..+.+.+.|+.....   .   +.+++++. .|
T Consensus         2 v~~i~s~~ele~f~~~---~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~~~---~---~~~~~~~~-~~   68 (107)
T cd03068           2 SKQLQTLKQVQEFLRD---GDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTFDS---E---IFKSLKVS-PG   68 (107)
T ss_pred             ceEcCCHHHHHHHHhc---CCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEEChH---H---HHHhcCCC-CC
Confidence            3456788888888764   225556656554333   3445688899998777888665433   3   77888876 56


Q ss_pred             eEEEEeC-------CeEEEEEeCC--C-hHHHHHHHHH
Q 018973          313 TFLFIRD-------GQIRGRYVGS--G-KGELIGEILR  340 (348)
Q Consensus       313 Tl~~~~~-------G~~v~~~~G~--~-~~~L~~~l~~  340 (348)
                      .+++|+.       ......|.|.  + .++|.+||++
T Consensus        69 ~vvl~rp~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~  106 (107)
T cd03068          69 QLVVFQPEKFQSKYEPKSHVLNKKDSTSEDELKDFFKE  106 (107)
T ss_pred             ceEEECcHHHhhhcCcceeeeeccccchHHHHHHHHhc
Confidence            6766621       1122333443  3 3448888875

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.

>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins

Probab=91.06  E-value=2.9  Score=30.35  Aligned_cols=73  Identities=12%  Similarity=0.085  Sum_probs=41.8

Q ss_pred             EEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch-hHHHHHHhCCCCccceEEEEeCCeEEEEEeCCChHHHHH
Q 018973          258 LDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND-SCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIG  336 (348)
Q Consensus       258 V~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~-~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~~~~~L~~  336 (348)
                      ..++.++|+.|++..-.|.+.      ++.|-.++++... ...++.+.-....+|+++...+|..+.     +...+.+
T Consensus         3 ~Ly~~~~sp~~~kv~~~L~~~------gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~-----es~~I~~   71 (77)
T cd03041           3 ELYEFEGSPFCRLVREVLTEL------ELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQMF-----ESADIVK   71 (77)
T ss_pred             eEecCCCCchHHHHHHHHHHc------CCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEEE-----cHHHHHH
Confidence            456778999999976555443      2444445554332 122355555667899986433443322     4456666


Q ss_pred             HHHHH
Q 018973          337 EILRY  341 (348)
Q Consensus       337 ~l~~~  341 (348)
                      +|.+.
T Consensus        72 yL~~~   76 (77)
T cd03041          72 YLFKT   76 (77)
T ss_pred             HHHHh
Confidence            66653

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides

Probab=90.57  E-value=4.3  Score=31.14  Aligned_cols=85  Identities=14%  Similarity=0.222  Sum_probs=55.3

Q ss_pred             hhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEe
Q 018973          239 KEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIR  318 (348)
Q Consensus       239 ~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~  318 (348)
                      .+++...++.-  .+...++.|..+. ..|..+...++++++-- +++.+...+.+.              ..|++.+..
T Consensus         7 ~~qL~~~f~~l--~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lS-dkI~~~~~~~~~--------------~~P~~~i~~   68 (94)
T cd02974           7 KQQLKAYLERL--ENPVELVASLDDS-EKSAELLELLEEIASLS-DKITLEEDNDDE--------------RKPSFSINR   68 (94)
T ss_pred             HHHHHHHHHhC--CCCEEEEEEeCCC-cchHHHHHHHHHHHHhC-CceEEEEecCCC--------------CCCEEEEec
Confidence            35566666543  3445555565555 89999998888888664 566664433211              379999887


Q ss_pred             CCeEE-EEEeCC-ChHHHHHHHHHH
Q 018973          319 DGQIR-GRYVGS-GKGELIGEILRY  341 (348)
Q Consensus       319 ~G~~v-~~~~G~-~~~~L~~~l~~~  341 (348)
                      +|+.. -+|.|. .-.++..+|...
T Consensus        69 ~~~~~gIrF~GiP~GhEf~Slilai   93 (94)
T cd02974          69 PGEDTGIRFAGIPMGHEFTSLVLAL   93 (94)
T ss_pred             CCCcccEEEEecCCchhHHHHHHHh
Confidence            77432 477888 677788777653

AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-

>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2

Probab=90.03  E-value=3.7  Score=29.53  Aligned_cols=74  Identities=18%  Similarity=0.205  Sum_probs=43.3

Q ss_pred             EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEe--CCeEEEEEeCCChHHH
Q 018973          257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIR--DGQIRGRYVGSGKGEL  334 (348)
Q Consensus       257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~--~G~~v~~~~G~~~~~L  334 (348)
                      +..|+.+.|+.|++..-.|.+.      .+.|-.++++.... .++ +.-+...+|+++.-.  +|+.+.     +-..+
T Consensus         2 i~Ly~~~~~p~c~kv~~~L~~~------gi~y~~~~~~~~~~-~~~-~~~~~~~vP~l~~~~~~~~~~l~-----eS~~I   68 (77)
T cd03040           2 ITLYQYKTCPFCCKVRAFLDYH------GIPYEVVEVNPVSR-KEI-KWSSYKKVPILRVESGGDGQQLV-----DSSVI   68 (77)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHC------CCceEEEECCchhH-HHH-HHhCCCccCEEEECCCCCccEEE-----cHHHH
Confidence            3467788999999987555543      23344444443211 123 334567899987653  243322     45667


Q ss_pred             HHHHHHHhC
Q 018973          335 IGEILRYQG  343 (348)
Q Consensus       335 ~~~l~~~~~  343 (348)
                      .++|++.+|
T Consensus        69 ~~yL~~~~~   77 (77)
T cd03040          69 ISTLKTYLG   77 (77)
T ss_pred             HHHHHHHcC
Confidence            788887765

Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.

>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA

Probab=89.88  E-value=1.1  Score=32.64  Aligned_cols=58  Identities=17%  Similarity=0.192  Sum_probs=46.3

Q ss_pred             EEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCCCchhHHHHHHHcCcCCCCeEEE
Q 018973          141 LVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGDESEKTKELCEREKIKKVPHFSF  201 (348)
Q Consensus       141 ~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~  201 (348)
                      .++..|-+..-+..++.-..+.++.+++.+  +.+-.||+.+   .+++++.++|-++||++-
T Consensus         2 ~~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~---~P~lAe~~~ivAtPtLvk   61 (72)
T cd02978           2 YVLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLK---QPQLAEEDKIVATPTLVK   61 (72)
T ss_pred             eEEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEccc---CHhHHhhCCEEEechhhh
Confidence            356667777778888888888888877643  8888899999   556999999999999753

KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor

>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=89.19  E-value=3.3  Score=31.97  Aligned_cols=73  Identities=12%  Similarity=0.308  Sum_probs=49.6

Q ss_pred             ceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHc-CCcEEEEEeCCCchhHHHHHHHcCcCCCCeE
Q 018973          121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQC-NDVEFILVMGDESEKTKELCEREKIKKVPHF  199 (348)
Q Consensus       121 v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~-~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~  199 (348)
                      +..|.+.++++.++... +..+||-|+..--.   .....+.++|+.+ .+..|+.....      ++...+++. .|++
T Consensus         2 v~~i~~~~~~e~~~~~~-~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~~~------~~~~~~~~~-~~~i   70 (102)
T cd03066           2 VEIINSERELQAFENIE-DDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATFDS------KVAKKLGLK-MNEV   70 (102)
T ss_pred             ceEcCCHHHHHHHhccc-CCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEECcH------HHHHHcCCC-CCcE
Confidence            57788999999998512 44555555554333   3456778888888 55888665422      367788775 7899


Q ss_pred             EEeec
Q 018973          200 SFYKS  204 (348)
Q Consensus       200 ~~~~~  204 (348)
                      +++++
T Consensus        71 ~l~~~   75 (102)
T cd03066          71 DFYEP   75 (102)
T ss_pred             EEeCC
Confidence            99875

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca

>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides

Probab=89.03  E-value=4  Score=31.32  Aligned_cols=64  Identities=14%  Similarity=0.224  Sum_probs=45.1

Q ss_pred             HHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeecc
Q 018973          127 IEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSM  205 (348)
Q Consensus       127 ~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g  205 (348)
                      .+++.+.+.+..+...++.|..+. ..|..+...++++++-.+.+.+...+.++              ..|++.+..+|
T Consensus         7 ~~qL~~~f~~l~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSdkI~~~~~~~~~--------------~~P~~~i~~~~   70 (94)
T cd02974           7 KQQLKAYLERLENPVELVASLDDS-EKSAELLELLEEIASLSDKITLEEDNDDE--------------RKPSFSINRPG   70 (94)
T ss_pred             HHHHHHHHHhCCCCEEEEEEeCCC-cchHHHHHHHHHHHHhCCceEEEEecCCC--------------CCCEEEEecCC
Confidence            456677777655666666666655 99999999999999887666554333211              47999998776

AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-

>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC

Probab=88.63  E-value=1  Score=35.26  Aligned_cols=45  Identities=4%  Similarity=0.043  Sum_probs=32.0

Q ss_pred             EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCc----hhHHHHHHHcC
Q 018973          143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDES----EKTKELCEREK  192 (348)
Q Consensus       143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~----~~~~~l~~~~~  192 (348)
                      +..|+.++|+.|++....|++     .++.|-.+|..+.    ++..++.+++|
T Consensus         1 i~iy~~~~C~~crka~~~L~~-----~~i~~~~~di~~~p~s~~eL~~~l~~~g   49 (105)
T cd03035           1 ITLYGIKNCDTVKKARKWLEA-----RGVAYTFHDYRKDGLDAATLERWLAKVG   49 (105)
T ss_pred             CEEEeCCCCHHHHHHHHHHHH-----cCCCeEEEecccCCCCHHHHHHHHHHhC
Confidence            357889999999999888876     3666667775543    24556666666

The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.

>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A

Probab=88.48  E-value=7.1  Score=28.02  Aligned_cols=72  Identities=15%  Similarity=0.138  Sum_probs=47.8

Q ss_pred             EeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCCChHHHHHHHH
Q 018973          260 VGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEIL  339 (348)
Q Consensus       260 F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~~~~~L~~~l~  339 (348)
                      ++.++|+.|++..-.+....    =.+.+..++..+..  .++.+...-..+|++.  .+|..+.     +-..+.++|+
T Consensus         2 y~~~~Sp~~~kv~~~l~~~~----i~~~~~~v~~~~~~--~~~~~~~p~~~vPvL~--~~g~~l~-----dS~~I~~yL~   68 (75)
T PF13417_consen    2 YGFPGSPYSQKVRLALEEKG----IPYELVPVDPEEKR--PEFLKLNPKGKVPVLV--DDGEVLT-----DSAAIIEYLE   68 (75)
T ss_dssp             EEETTSHHHHHHHHHHHHHT----EEEEEEEEBTTSTS--HHHHHHSTTSBSSEEE--ETTEEEE-----SHHHHHHHHH
T ss_pred             CCcCCChHHHHHHHHHHHcC----CeEEEeccCcccch--hHHHhhcccccceEEE--ECCEEEe-----CHHHHHHHHH
Confidence            67889999999754444321    12556666655432  2377777788999997  4577544     6677888888


Q ss_pred             HHhCC
Q 018973          340 RYQGV  344 (348)
Q Consensus       340 ~~~~~  344 (348)
                      +..+.
T Consensus        69 ~~~~~   73 (75)
T PF13417_consen   69 ERYPG   73 (75)
T ss_dssp             HHSTS
T ss_pred             HHcCC
Confidence            77653

...

>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []

Probab=88.41  E-value=0.76  Score=41.12  Aligned_cols=46  Identities=13%  Similarity=0.150  Sum_probs=37.5

Q ss_pred             HHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHH-----cCCcEEEEEeCC
Q 018973          134 LRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQ-----CNDVEFILVMGD  179 (348)
Q Consensus       134 l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~-----~~~v~f~~vd~d  179 (348)
                      +.++.++.+||-+...+|..|..-...|+.|..+     +++|.|+.||--
T Consensus        21 m~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~   71 (238)
T PF04592_consen   21 MLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ   71 (238)
T ss_pred             hhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence            4555789999999999999999888888877643     567999999944

It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding

>KOG2640 consensus Thioredoxin [Function unknown]

Probab=88.29  E-value=0.18  Score=46.73  Aligned_cols=134  Identities=16%  Similarity=0.075  Sum_probs=78.6

Q ss_pred             HHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeeccccccc
Q 018973          131 DEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHE  210 (348)
Q Consensus       131 ~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~~v~~  210 (348)
                      .+++-..+.-+|-+.||++||+-.+...|.++-...-++.+....  +++.........+|++...|++.+...--.. +
T Consensus        68 ~~~ih~n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~--vee~~~lpsv~s~~~~~~~ps~~~~n~t~~~-~  144 (319)
T KOG2640|consen   68 LDAIHGNKNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFA--VEESQALPSVFSSYGIHSEPSNLMLNQTCPA-S  144 (319)
T ss_pred             HHhhccccCCcccccchhcccCcccccCcccchhhhhcccccccc--HHHHhhcccchhccccccCCcceeeccccch-h
Confidence            333333346789999999999999999999988888887533333  4454445678899999999998876432222 2


Q ss_pred             ccc-CCCCcccccccccCCCccceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHH
Q 018973          211 EEG-IGPDQLMGDVLYYGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQ  281 (348)
Q Consensus       211 ~~G-~~~~~l~~~v~~~~~~~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~  281 (348)
                      +-| .+.+.|++.-....   ...+.+       +++.    -.+.....+|.+||++-.-..|...-+...
T Consensus       145 ~~~~r~l~sLv~fy~~i~---~~~v~i-------e~~d----~~~~~~~~ry~~~~~~t~l~~p~~~~~~~~  202 (319)
T KOG2640|consen  145 YRGERDLASLVNFYTEIT---PMSVLI-------EILD----CTSCLEPVRYVPEGGPTILLAPDGNLFTWA  202 (319)
T ss_pred             hcccccHHHHHHHHHhhc---cchhcc-------cccC----cccceeeeEeccccCcccccCcCCCcchhc
Confidence            222 22333332211110   000000       1111    122467788999998876666555444333

>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1

Probab=88.21  E-value=0.62  Score=41.89  Aligned_cols=63  Identities=14%  Similarity=0.209  Sum_probs=48.6

Q ss_pred             CCCCCceEecCHH--HHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCC
Q 018973          116 PRDERVKKVHSIE--EFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDE  180 (348)
Q Consensus       116 ~~~~~v~~v~s~~--~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~  180 (348)
                      .++..|+.+....  .+-+..+  +++|+|+.|.+--|+|-..-.+.+++++++|.+ +.|+.|-+.|
T Consensus        79 APns~vv~l~g~~~~~ildf~~--g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~E  144 (237)
T PF00837_consen   79 APNSPVVTLDGQRSCRILDFAK--GNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEE  144 (237)
T ss_pred             CCCCceEeeCCCcceeHHHhcc--CCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhh
Confidence            3445666663332  2333333  599999999999999999999999999999998 6899888766

97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process

>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=88.18  E-value=2.4  Score=32.90  Aligned_cols=71  Identities=14%  Similarity=0.221  Sum_probs=50.8

Q ss_pred             ceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHc-CCcEEEEEeCCCchhHHHHHHHcCcCCCCeE
Q 018973          121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQC-NDVEFILVMGDESEKTKELCEREKIKKVPHF  199 (348)
Q Consensus       121 v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~-~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~  199 (348)
                      +.+|.+.+++++.+.  .++.+||-|+..--.   .....+.++|+.+ .+..|+....+      ++...+++  .|++
T Consensus         2 ~~~i~s~~~l~~f~~--~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~~~------~~~~~~~~--~~~i   68 (104)
T cd03069           2 SVELRTEAEFEKFLS--DDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTSDK------QLLEKYGY--GEGV   68 (104)
T ss_pred             ccccCCHHHHHHHhc--cCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEChH------HHHHhcCC--CCce
Confidence            467788999999886  566667666665433   3566778888888 45888766533      37788888  7888


Q ss_pred             EEeec
Q 018973          200 SFYKS  204 (348)
Q Consensus       200 ~~~~~  204 (348)
                      ++|+.
T Consensus        69 vl~~p   73 (104)
T cd03069          69 VLFRP   73 (104)
T ss_pred             EEEec
Confidence            88854

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.

>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]

Probab=88.17  E-value=4.1  Score=39.55  Aligned_cols=96  Identities=21%  Similarity=0.175  Sum_probs=59.5

Q ss_pred             HHhhhcccCCcEEEEEEeCCCChhhhhhh-hHH-HHH-HHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEE-eC
Q 018973          244 KLIDDHKVDQKLIVLDVGLKHCGPCVKVY-PTV-IKL-SRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFI-RD  319 (348)
Q Consensus       244 ~~l~~~~~~~k~vvV~F~a~wC~~C~~~~-p~l-~~l-a~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~-~~  319 (348)
                      +.+..++.++..+||++.+. -....++. -.| ... .+..-..+..++|+.... .+.++..-|-+..+|++.++ ..
T Consensus        10 eAIa~aK~kkalfVVyI~gd-dE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~-aa~qFs~IYp~v~vPs~ffIg~s   87 (506)
T KOG2507|consen   10 EAIAEAKGKKALFVVYISGD-DEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSV-AATQFSAIYPYVSVPSIFFIGFS   87 (506)
T ss_pred             HHHHHhhcCCeEEEEEEecC-chHhhHHhhccchhhhhhhhhhcceEEEEeccCch-hhhhhhhhcccccccceeeecCC
Confidence            33444433445555554444 44444443 112 121 122222355566665543 35678888999999987777 68


Q ss_pred             CeEEEEEeCC-ChHHHHHHHHHH
Q 018973          320 GQIRGRYVGS-GKGELIGEILRY  341 (348)
Q Consensus       320 G~~v~~~~G~-~~~~L~~~l~~~  341 (348)
                      |..+....|. ..++|...|++.
T Consensus        88 GtpLevitg~v~adeL~~~i~Kv  110 (506)
T KOG2507|consen   88 GTPLEVITGFVTADELASSIEKV  110 (506)
T ss_pred             CceeEEeeccccHHHHHHHHHHH
Confidence            9999999999 999999988875

>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs

Probab=88.06  E-value=2  Score=30.57  Aligned_cols=58  Identities=12%  Similarity=0.232  Sum_probs=36.4

Q ss_pred             EEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeE
Q 018973          258 LDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQI  322 (348)
Q Consensus       258 V~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~  322 (348)
                      ..|+.++|+.|++..-.+.+..    -.+.+..+|....+  .++.+......+|++.. .+|..
T Consensus         2 ~ly~~~~~p~~~rv~~~L~~~g----l~~e~~~v~~~~~~--~~~~~~np~~~vP~L~~-~~g~~   59 (71)
T cd03060           2 ILYSFRRCPYAMRARMALLLAG----ITVELREVELKNKP--AEMLAASPKGTVPVLVL-GNGTV   59 (71)
T ss_pred             EEEecCCCcHHHHHHHHHHHcC----CCcEEEEeCCCCCC--HHHHHHCCCCCCCEEEE-CCCcE
Confidence            3567899999999865555432    12555666654322  23666667789999964 34554

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r

>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]

Probab=87.80  E-value=3.1  Score=33.05  Aligned_cols=70  Identities=17%  Similarity=0.358  Sum_probs=38.2

Q ss_pred             hhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeC
Q 018973          240 EDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRD  319 (348)
Q Consensus       240 ~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~  319 (348)
                      +.+.+++++.... +.++|.=+-+. +.-+.....+.++..+.+..   ..+.  -++.   +.++|+|+.+||+++.++
T Consensus        11 ~~L~~l~~~a~~~-~~~~V~RG~~~-g~~~~t~~~~~~l~~~~~~~---~~v~--IdP~---~F~~y~I~~VPa~V~~~~   80 (113)
T PF09673_consen   11 ASLRNLLKQAERA-GVVVVFRGFPD-GSFKPTAKAIQELLRKDDPC---PGVQ--IDPR---LFRQYNITAVPAFVVVKD   80 (113)
T ss_pred             HHHHHHHHHHHhC-CcEEEEECCCC-CCHHHHHHHHHHHhhccCCC---ccee--EChh---HHhhCCceEcCEEEEEcC
Confidence            5566666665333 33333323222 23333333344444443221   2233  3455   899999999999999887

The N-terminal portion of these proteins is heterogeneous.

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=87.64  E-value=11  Score=36.20  Aligned_cols=173  Identities=17%  Similarity=0.209  Sum_probs=105.7

Q ss_pred             CCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeecccccc-ccccCC--
Q 018973          139 NKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIH-EEEGIG--  215 (348)
Q Consensus       139 ~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~~v~-~~~G~~--  215 (348)
                      ..++.+.-........+.+...+++++...+.+.+-. +.+.             ..-|.|.+-+.|+... +|.|..  
T Consensus        18 ~~~i~l~asldds~~s~~~~~ll~eia~~S~kis~~~-~~~~-------------~RkpSF~i~r~g~~~gv~FAglPlG   83 (520)
T COG3634          18 EQPIELVASLDDSEKSKEIKELLDEIASLSDKISLEE-DSDL-------------VRKPSFSINRPGEDQGVRFAGLPLG   83 (520)
T ss_pred             cCCeEEEEecCcccccHHHHHHHHHHHhhccceeeee-cCcc-------------ccCCceeecCCCcccceEEecCccc
Confidence            4566666777788888888888888887664443322 2111             3458888877775442 333421  


Q ss_pred             --CCcccccccccCCCccceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEEC
Q 018973          216 --PDQLMGDVLYYGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNG  293 (348)
Q Consensus       216 --~~~l~~~v~~~~~~~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~  293 (348)
                        ...|+-.++..+..++.+     .+++-+.++.-  ++...+=-|++-.|..|-.+...|+-++-- .+++.-..||.
T Consensus        84 HEftSlVLaLlqv~G~ppk~-----~q~vieqik~i--~g~~~FETy~SltC~nCPDVVQALN~msvl-Np~I~H~~IdG  155 (520)
T COG3634          84 HEFTSLVLALLQVGGHPPKE-----DQDVIEQIKAI--DGDFHFETYFSLTCHNCPDVVQALNLMSVL-NPRIKHTAIDG  155 (520)
T ss_pred             chHHHHHHHHHHhcCCCCch-----hHHHHHHHHhc--CCceeEEEEEEeeccCChHHHHHHHHHHhc-CCCceeEEecc
Confidence              122222222222222211     12233333332  567777778888899998887777766544 45788899998


Q ss_pred             CCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCC-ChHHHHHHHHH
Q 018973          294 DENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS-GKGELIGEILR  340 (348)
Q Consensus       294 ~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~  340 (348)
                      .-..+   -.+.-+|-.+||+.+  ||+..+  .|. +.+++.+.|..
T Consensus       156 a~Fq~---Evear~IMaVPtvfl--nGe~fg--~GRmtleeilaki~~  196 (520)
T COG3634         156 ALFQD---EVEARNIMAVPTVFL--NGEEFG--QGRMTLEEILAKIDT  196 (520)
T ss_pred             hhhHh---HHHhccceecceEEE--cchhhc--ccceeHHHHHHHhcC
Confidence            76655   566678999999876  777544  355 76777666653

>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs

Probab=87.63  E-value=2  Score=30.58  Aligned_cols=53  Identities=13%  Similarity=0.071  Sum_probs=35.1

Q ss_pred             EEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEE
Q 018973          144 VEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSF  201 (348)
Q Consensus       144 V~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~  201 (348)
                      +.|+.+||+.|++..-.+++..-   ++.+..+|....  ..++.+......+|++..
T Consensus         2 ~ly~~~~~p~~~rv~~~L~~~gl---~~e~~~v~~~~~--~~~~~~~np~~~vP~L~~   54 (71)
T cd03060           2 ILYSFRRCPYAMRARMALLLAGI---TVELREVELKNK--PAEMLAASPKGTVPVLVL   54 (71)
T ss_pred             EEEecCCCcHHHHHHHHHHHcCC---CcEEEEeCCCCC--CHHHHHHCCCCCCCEEEE
Confidence            45788999999998766555322   256666665432  235666667789999864

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r

>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins

Probab=87.62  E-value=3.1  Score=30.17  Aligned_cols=53  Identities=15%  Similarity=0.155  Sum_probs=33.5

Q ss_pred             EEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCch-hHHHHHHHcCcCCCCeEEE
Q 018973          144 VEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESE-KTKELCEREKIKKVPHFSF  201 (348)
Q Consensus       144 V~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~-~~~~l~~~~~V~~~Pt~~~  201 (348)
                      ..|+.++|+.|++..-.|++.     ++.|-.++++..+ ...++.+..+-..+|+++.
T Consensus         3 ~Ly~~~~sp~~~kv~~~L~~~-----gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~   56 (77)
T cd03041           3 ELYEFEGSPFCRLVREVLTEL-----ELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVD   56 (77)
T ss_pred             eEecCCCCchHHHHHHHHHHc-----CCcEEEEECCCChHHHHHHHHhCCCCcccEEEe
Confidence            467778999999987666653     4444445554432 1234554456678999864

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC

Probab=87.17  E-value=1.3  Score=35.01  Aligned_cols=53  Identities=13%  Similarity=0.149  Sum_probs=33.6

Q ss_pred             EEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCch-hHHHHHHHcCcCCCCeEEE
Q 018973          144 VEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESE-KTKELCEREKIKKVPHFSF  201 (348)
Q Consensus       144 V~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~-~~~~l~~~~~V~~~Pt~~~  201 (348)
                      ..|+.++|+.|++....|++     .++.|-.+|+.+.+ ...++.+-.+-.+.|.--+
T Consensus         2 ~iY~~~~C~~c~ka~~~L~~-----~~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l   55 (111)
T cd03036           2 KFYEYPKCSTCRKAKKWLDE-----HGVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKF   55 (111)
T ss_pred             EEEECCCCHHHHHHHHHHHH-----cCCceEEecccCCcccHHHHHHHHHHcCCCHHHH
Confidence            46889999999999988877     46777777766532 1233333333344454333

Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.

>PRK09301 circadian clock protein KaiB; Provisional

Probab=86.53  E-value=1.9  Score=33.60  Aligned_cols=72  Identities=11%  Similarity=0.165  Sum_probs=55.6

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHc-CC-cEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeecccccccccc
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQC-ND-VEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEG  213 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~-~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~~v~~~~G  213 (348)
                      ++..++=.|.|..-+..+..-..+.++-+++ ++ +.+-.||+.+   .+++++.++|-++||++-.. -.++.++.|
T Consensus         4 ~~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~---qPelAE~~~IvATPTLIK~~-P~P~rriiG   77 (103)
T PRK09301          4 RKTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLK---NPQLAEEDKILATPTLAKIL-PPPVRKIIG   77 (103)
T ss_pred             CceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEccc---CHhHHhHCCeEEecHHhhcC-CCCcceeec
Confidence            4577888899999999998888888887765 34 7888888888   55699999999999965322 345555555

>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx

Probab=86.34  E-value=1.2  Score=34.71  Aligned_cols=33  Identities=9%  Similarity=0.224  Sum_probs=25.3

Q ss_pred             EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCC
Q 018973          143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE  180 (348)
Q Consensus       143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~  180 (348)
                      +..|+.++|+.|++....|++     .++.|-.+|+.+
T Consensus         1 i~iY~~~~C~~c~ka~~~L~~-----~~i~~~~idi~~   33 (105)
T cd02977           1 ITIYGNPNCSTSRKALAWLEE-----HGIEYEFIDYLK   33 (105)
T ss_pred             CEEEECCCCHHHHHHHHHHHH-----cCCCcEEEeecc
Confidence            357889999999999888877     356666777654

ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.

>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC

Probab=86.27  E-value=3.5  Score=33.70  Aligned_cols=89  Identities=13%  Similarity=0.270  Sum_probs=48.9

Q ss_pred             hhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeC
Q 018973          240 EDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRD  319 (348)
Q Consensus       240 ~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~  319 (348)
                      +.+.+++.+....+.++++. +-.. +.-+.....+.++...-. .   ..+.  -++.   +.++|+|+.+|++++.++
T Consensus        12 ~~Lk~l~~~a~~~g~~~VlR-G~~~-~~~~~T~~~i~~L~~~~~-~---~~v~--IdP~---lF~~f~I~~VPa~V~~~~   80 (130)
T TIGR02742        12 PLLKQLLDQAEALGAPLVIR-GLLD-NGFKATATRIQSLIKDGG-K---SGVQ--IDPQ---WFKQFDITAVPAFVVVKD   80 (130)
T ss_pred             HHHHHHHHHHHHhCCeEEEe-CCCC-CCHHHHHHHHHHHHhcCC-C---CcEE--EChH---HHhhcCceEcCEEEEECC
Confidence            45566665554334443332 2222 122333333444433321 1   2222  3455   999999999999999988


Q ss_pred             Ce-----------EEEEEeCC-ChHHHHHHHH
Q 018973          320 GQ-----------IRGRYVGS-GKGELIGEIL  339 (348)
Q Consensus       320 G~-----------~v~~~~G~-~~~~L~~~l~  339 (348)
                      +.           ...+..|- +.+.-.+.+.
T Consensus        81 ~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia  112 (130)
T TIGR02742        81 GLACLPEQPCPESDYDVVYGNVSLKGALEKMA  112 (130)
T ss_pred             CCcccccCCCCCCCeeEEEecccHHHHHHHHH
Confidence            74           34566777 6555555555

This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.

>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=86.22  E-value=1.4  Score=32.13  Aligned_cols=59  Identities=17%  Similarity=0.288  Sum_probs=37.7

Q ss_pred             EEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch-hHHH------------HHHhCCCCccceEEEEeCCeEE
Q 018973          258 LDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND-SCMQ------------FLRDMNVVEVPTFLFIRDGQIR  323 (348)
Q Consensus       258 V~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~-~~~~------------l~~~~~V~~~PTl~~~~~G~~v  323 (348)
                      +.|++..||.|..+...|.++      .+.+-.|++.+.- +.++            -.+.+|--++|.+++ .+|+++
T Consensus         5 ~lfgsn~Cpdca~a~eyl~rl------~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~-~d~~vV   76 (85)
T COG4545           5 KLFGSNLCPDCAPAVEYLERL------NVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLT-DDGKVV   76 (85)
T ss_pred             eeeccccCcchHHHHHHHHHc------CCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEe-CCCcEE
Confidence            679999999999887666654      2555566655432 1111            233466678999876 456554

>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA

Probab=86.17  E-value=3.1  Score=30.26  Aligned_cols=58  Identities=7%  Similarity=0.123  Sum_probs=44.2

Q ss_pred             EEEEEeCCCChhhhhhhhHHHHHHHHh-CCcEEEEEEECCCchhHHHHHHhCCCCccceEEE
Q 018973          256 IVLDVGLKHCGPCVKVYPTVIKLSRQM-AGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLF  316 (348)
Q Consensus       256 vvV~F~a~wC~~C~~~~p~l~~la~~~-~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~  316 (348)
                      .+..|-+..-+..+.....+.++-+++ ++.+.+-.||+.++++   +++.++|-.+||++-
T Consensus         3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~---lAe~~~ivAtPtLvk   61 (72)
T cd02978           3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQ---LAEEDKIVATPTLVK   61 (72)
T ss_pred             EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHh---HHhhCCEEEechhhh
Confidence            344555555566777766677766665 5668899999999998   999999999999763

KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor

>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC

Probab=85.64  E-value=0.51  Score=37.37  Aligned_cols=75  Identities=13%  Similarity=0.151  Sum_probs=43.0

Q ss_pred             EEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch----hHHHHHHhCCCCccceEEEE-eCCeEEE------EE
Q 018973          258 LDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND----SCMQFLRDMNVVEVPTFLFI-RDGQIRG------RY  326 (348)
Q Consensus       258 V~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~----~~~~l~~~~~V~~~PTl~~~-~~G~~v~------~~  326 (348)
                      ..|+.++|+.|++....|++      .++.|-.+|+.+.+    ++.++..+.+   .|.--++ +.|....      ..
T Consensus         2 ~iY~~~~C~~c~ka~~~L~~------~~i~~~~idi~~~~~~~~el~~~~~~~~---~~~~~l~~~~~~~~~~l~~~~~~   72 (111)
T cd03036           2 KFYEYPKCSTCRKAKKWLDE------HGVDYTAIDIVEEPPSKEELKKWLEKSG---LPLKKFFNTSGKSYRELGLKDKL   72 (111)
T ss_pred             EEEECCCCHHHHHHHHHHHH------cCCceEEecccCCcccHHHHHHHHHHcC---CCHHHHHhcCCchHHhCCccccc
Confidence            46889999999998666654      23667777776544    3334555544   4533222 3443221      11


Q ss_pred             eCCChHHHHHHHHHH
Q 018973          327 VGSGKGELIGEILRY  341 (348)
Q Consensus       327 ~G~~~~~L~~~l~~~  341 (348)
                      .+.+.+++.+.|.++
T Consensus        73 ~~~s~~e~~~~l~~~   87 (111)
T cd03036          73 PSLSEEEALELLSSD   87 (111)
T ss_pred             ccCCHHHHHHHHHhC
Confidence            233567777777664

Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.

>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems

Probab=85.56  E-value=3.1  Score=35.65  Aligned_cols=44  Identities=20%  Similarity=0.416  Sum_probs=33.0

Q ss_pred             CCcEEEEEEeCCCChh-hhhhhhHHHHHHHHhC---CcEEEEEEECCC
Q 018973          252 DQKLIVLDVGLKHCGP-CVKVYPTVIKLSRQMA---GTVVFARMNGDE  295 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~-C~~~~p~l~~la~~~~---~~v~~~~vd~~~  295 (348)
                      .+++++|+|.-+.|+. |-.+...+.++.+.++   .++.++.|.+|-
T Consensus        51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP   98 (174)
T PF02630_consen   51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDP   98 (174)
T ss_dssp             TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESST
T ss_pred             CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCC
Confidence            5899999999999964 8888777777766653   358888887763

In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....

>TIGR02654 circ_KaiB circadian clock protein KaiB

Probab=85.48  E-value=2.4  Score=31.98  Aligned_cols=70  Identities=14%  Similarity=0.160  Sum_probs=52.8

Q ss_pred             CEEEEEEeCCCCHHHHhhhhHHHHHHHHc-CC-cEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeecccccccccc
Q 018973          140 KLVVVEFAASRSLDSSKIYPFMVDLSRQC-ND-VEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEG  213 (348)
Q Consensus       140 k~vvV~F~a~wC~~C~~~~p~l~~la~~~-~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~~v~~~~G  213 (348)
                      ..++=.|.|..-+..+..-..+.++.+++ .+ +.+-.||+.+   .+++++.++|-++||++-.. -.+..++.|
T Consensus         3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~---qP~lAE~~~IvATPtLIK~~-P~P~rriiG   74 (87)
T TIGR02654         3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLK---NPQLAEEDKILATPTLSKIL-PPPVRKIIG   74 (87)
T ss_pred             eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEccc---CHhHHhHCCEEEecHHhhcC-CCCcceeec
Confidence            56777788888888888888888887765 44 7888888888   55699999999999965322 344455555

Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.

>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]

Probab=85.46  E-value=7  Score=33.15  Aligned_cols=32  Identities=19%  Similarity=0.356  Sum_probs=25.3

Q ss_pred             ceEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973          312 PTFLFIRDGQIRGRYVGS-GKGELIGEILRYQG  343 (348)
Q Consensus       312 PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~  343 (348)
                      =-|++.++|+++.|+... ++.++...|+++++
T Consensus       138 ~KFLVd~~G~vv~Ry~ptt~p~~~~~dIe~lL~  170 (171)
T KOG1651|consen  138 TKFLVDKDGHVVKRFSPTTSPLDIEKDIEKLLA  170 (171)
T ss_pred             EEEeECCCCcEEEeeCCCCCccccchhHHHHhc
Confidence            357888999999999887 77777777777664

>PHA03075 glutaredoxin-like protein; Provisional

Probab=85.40  E-value=1.2  Score=35.35  Aligned_cols=36  Identities=19%  Similarity=0.308  Sum_probs=28.8

Q ss_pred             cEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEEC
Q 018973          254 KLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNG  293 (348)
Q Consensus       254 k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~  293 (348)
                      |.+++.|+.|.|+-|+.....++++.++|    .+.+||+
T Consensus         2 K~tLILfGKP~C~vCe~~s~~l~~ledeY----~ilrVNI   37 (123)
T PHA03075          2 KKTLILFGKPLCSVCESISEALKELEDEY----DILRVNI   37 (123)
T ss_pred             CceEEEeCCcccHHHHHHHHHHHHhhccc----cEEEEEe
Confidence            46789999999999999998898887665    3455554

>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC

Probab=85.34  E-value=1.2  Score=34.95  Aligned_cols=74  Identities=14%  Similarity=0.172  Sum_probs=42.2

Q ss_pred             EEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch----hHHHHHHhCCCCccceEEEEeCCeEEEEE-----eC
Q 018973          258 LDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND----SCMQFLRDMNVVEVPTFLFIRDGQIRGRY-----VG  328 (348)
Q Consensus       258 V~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~----~~~~l~~~~~V~~~PTl~~~~~G~~v~~~-----~G  328 (348)
                      ..|+.++|+.|++....|.+    .  ++.|-.+|+.+.+    ++.++.+++|+    .-++-++|......     ..
T Consensus         2 ~iy~~~~C~~crka~~~L~~----~--~i~~~~~di~~~p~s~~eL~~~l~~~g~----~~li~~~~~~yk~l~l~~~~~   71 (105)
T cd03035           2 TLYGIKNCDTVKKARKWLEA----R--GVAYTFHDYRKDGLDAATLERWLAKVGW----ETLLNKRGTTWRKLDDAQKAA   71 (105)
T ss_pred             EEEeCCCCHHHHHHHHHHHH----c--CCCeEEEecccCCCCHHHHHHHHHHhCh----HHHHccCchHHHhCChhhhcc
Confidence            56889999999998665554    2  3556666665443    45567777663    22222344322111     11


Q ss_pred             CChHHHHHHHHHH
Q 018973          329 SGKGELIGEILRY  341 (348)
Q Consensus       329 ~~~~~L~~~l~~~  341 (348)
                      .+.+++.+.|.++
T Consensus        72 ~s~~e~~~~l~~~   84 (105)
T cd03035          72 LDAAKAIALMLEH   84 (105)
T ss_pred             CCHHHHHHHHHhC
Confidence            2556677777654

The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.

>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []

Probab=85.11  E-value=1.8  Score=37.20  Aligned_cols=38  Identities=16%  Similarity=-0.043  Sum_probs=30.2

Q ss_pred             EEEEeCCCCHHHHhhhhHHHHHHHHcCCc--EEEEEeCCC
Q 018973          143 VVEFAASRSLDSSKIYPFMVDLSRQCNDV--EFILVMGDE  180 (348)
Q Consensus       143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v--~f~~vd~d~  180 (348)
                      |..|+-.-|+.|-...+.|.++.++++++  .+.-+....
T Consensus         2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~~   41 (193)
T PF01323_consen    2 IEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLRP   41 (193)
T ss_dssp             EEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSST
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecccccc
Confidence            67888899999999999999999999764  444444433

The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....

>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems

Probab=84.35  E-value=1.9  Score=36.97  Aligned_cols=53  Identities=26%  Similarity=0.387  Sum_probs=35.2

Q ss_pred             CCCEEEEEEeCCCCH-HHHhhhhHHHHHHHHc----CCcEEEEEeCCCchhHHHHHHH
Q 018973          138 KNKLVVVEFAASRSL-DSSKIYPFMVDLSRQC----NDVEFILVMGDESEKTKELCER  190 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~-~C~~~~p~l~~la~~~----~~v~f~~vd~d~~~~~~~l~~~  190 (348)
                      ++|+++|.|.=+.|+ .|-.+...|.++.++.    .++.++.|.+|-..+.++..++
T Consensus        51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~~  108 (174)
T PF02630_consen   51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLKK  108 (174)
T ss_dssp             TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHHH
T ss_pred             CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHHH
Confidence            689999999999996 7987777776665543    3477777777743223344444

In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....

>PRK01655 spxA transcriptional regulator Spx; Reviewed

Probab=84.07  E-value=2.5  Score=34.47  Aligned_cols=34  Identities=18%  Similarity=0.176  Sum_probs=26.2

Q ss_pred             EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCc
Q 018973          143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDES  181 (348)
Q Consensus       143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~  181 (348)
                      +..|+.++|+.|++....|++     .++.|-.+|+.+.
T Consensus         2 i~iY~~~~C~~C~ka~~~L~~-----~gi~~~~idi~~~   35 (131)
T PRK01655          2 VTLFTSPSCTSCRKAKAWLEE-----HDIPFTERNIFSS   35 (131)
T ss_pred             EEEEeCCCChHHHHHHHHHHH-----cCCCcEEeeccCC
Confidence            457889999999998877776     3667777776553

>PRK12559 transcriptional regulator Spx; Provisional

Probab=83.05  E-value=2.9  Score=34.18  Aligned_cols=33  Identities=12%  Similarity=0.198  Sum_probs=24.8

Q ss_pred             EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCC
Q 018973          143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE  180 (348)
Q Consensus       143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~  180 (348)
                      +..|+.++|+.|++....|++     .++.|-.+|+.+
T Consensus         2 i~iY~~~~C~~crkA~~~L~~-----~gi~~~~~di~~   34 (131)
T PRK12559          2 VVLYTTASCASCRKAKAWLEE-----NQIDYTEKNIVS   34 (131)
T ss_pred             EEEEeCCCChHHHHHHHHHHH-----cCCCeEEEEeeC
Confidence            467889999999998877776     356666666554

>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E

Probab=82.60  E-value=5.1  Score=28.30  Aligned_cols=56  Identities=21%  Similarity=0.230  Sum_probs=30.3

Q ss_pred             EEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeE
Q 018973          259 DVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQI  322 (348)
Q Consensus       259 ~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~  322 (348)
                      .++.++|+.|++..-.|....-    .+..+.++..+...   ..+..+-..+|++.. .+|..
T Consensus         3 Ly~~~~~p~~~rvr~~L~~~gl----~~~~~~~~~~~~~~---~~~~~~~~~vP~L~~-~~~~~   58 (71)
T cd03037           3 LYIYEHCPFCVKARMIAGLKNI----PVEQIILQNDDEAT---PIRMIGAKQVPILEK-DDGSF   58 (71)
T ss_pred             eEecCCCcHhHHHHHHHHHcCC----CeEEEECCCCchHH---HHHhcCCCccCEEEe-CCCeE
Confidence            4667899999998655554311    13333344332222   334445567898853 33543

coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.

>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]

Probab=82.56  E-value=3.4  Score=34.60  Aligned_cols=65  Identities=22%  Similarity=0.320  Sum_probs=46.2

Q ss_pred             HHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCCC--------chhHHHHHH-HcCcCCCCeEE
Q 018973          134 LRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGDE--------SEKTKELCE-REKIKKVPHFS  200 (348)
Q Consensus       134 l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d~--------~~~~~~l~~-~~~V~~~Pt~~  200 (348)
                      |.+.++++++|.=.|+-||--.+ ...|+.|.++|.+  +.++..-|++        .++..++|+ .|||+ +|.+-
T Consensus        20 l~~~~GkVlLIVNtASkCGfTpQ-YegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~~~YgVt-Fp~f~   95 (162)
T COG0386          20 LSDYKGKVLLIVNTASKCGFTPQ-YEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKFCQLNYGVT-FPMFS   95 (162)
T ss_pred             HHHhCCcEEEEEEcccccCCcHh-HHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHHHHhccCce-eeeee
Confidence            44558999999999999996553 4467778888875  7777777764        234566774 67776 55554

>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx

Probab=81.47  E-value=1.8  Score=33.59  Aligned_cols=75  Identities=11%  Similarity=0.073  Sum_probs=42.6

Q ss_pred             EEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch----hHHHHHHhCCCCccceE-EEEeCCeEEEE-----Ee
Q 018973          258 LDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND----SCMQFLRDMNVVEVPTF-LFIRDGQIRGR-----YV  327 (348)
Q Consensus       258 V~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~----~~~~l~~~~~V~~~PTl-~~~~~G~~v~~-----~~  327 (348)
                      ..|+.++|+.|++....|.+.      ++.|-.+|+.+.+    +..++..+.+   .+.- ++-++|.....     ..
T Consensus         2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~~~~~~~l~~~~~~~~---~~~~~li~~~~~~~~~l~~~~~~   72 (105)
T cd02977           2 TIYGNPNCSTSRKALAWLEEH------GIEYEFIDYLKEPPTKEELKELLAKLG---LGVEDLFNTRGTPYRKLGLADKD   72 (105)
T ss_pred             EEEECCCCHHHHHHHHHHHHc------CCCcEEEeeccCCCCHHHHHHHHHhcC---CCHHHHHhcCCchHHHcCCcccc
Confidence            468899999999986666552      3666777775533    3333444443   3222 22233322211     12


Q ss_pred             CCChHHHHHHHHHH
Q 018973          328 GSGKGELIGEILRY  341 (348)
Q Consensus       328 G~~~~~L~~~l~~~  341 (348)
                      +.+.+++.+.|.++
T Consensus        73 ~ls~~e~~~~l~~~   86 (105)
T cd02977          73 ELSDEEALELMAEH   86 (105)
T ss_pred             CCCHHHHHHHHHhC
Confidence            33788888888765

ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.

>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=81.03  E-value=14  Score=28.82  Aligned_cols=74  Identities=14%  Similarity=0.288  Sum_probs=50.1

Q ss_pred             ceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHc-CCcEEEEEeCCCchhHHHHHHHcCcCCCCeE
Q 018973          121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQC-NDVEFILVMGDESEKTKELCEREKIKKVPHF  199 (348)
Q Consensus       121 v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~-~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~  199 (348)
                      +..|.+.+++++.+.+ .++.+||-|+..--+   .....+.++|..+ .+..|+....+      ++.+++++. .|.+
T Consensus         2 v~~i~s~~ele~f~~~-~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~~~------~~~~~~~~~-~~~v   70 (107)
T cd03068           2 SKQLQTLKQVQEFLRD-GDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTFDS------EIFKSLKVS-PGQL   70 (107)
T ss_pred             ceEcCCHHHHHHHHhc-CCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEEChH------HHHHhcCCC-CCce
Confidence            5788899999998863 225666666655433   3556778888888 45888666533      377788876 5667


Q ss_pred             EEeecc
Q 018973          200 SFYKSM  205 (348)
Q Consensus       200 ~~~~~g  205 (348)
                      ++|+..
T Consensus        71 vl~rp~   76 (107)
T cd03068          71 VVFQPE   76 (107)
T ss_pred             EEECcH
Confidence            777543

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.

>TIGR02654 circ_KaiB circadian clock protein KaiB

Probab=80.96  E-value=5.9  Score=29.91  Aligned_cols=71  Identities=11%  Similarity=0.123  Sum_probs=51.3

Q ss_pred             EEEEEEeCCCChhhhhhhhHHHHHHHHh-CCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCC
Q 018973          255 LIVLDVGLKHCGPCVKVYPTVIKLSRQM-AGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS  329 (348)
Q Consensus       255 ~vvV~F~a~wC~~C~~~~p~l~~la~~~-~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~  329 (348)
                      .++=.|.+..-+..+.....+.++-+++ .+.+.+--||+.++++   +++.++|-.+||++-.-- ..+.++.|-
T Consensus         4 ~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~---lAE~~~IvATPtLIK~~P-~P~rriiGd   75 (87)
T TIGR02654         4 YVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQ---LAEEDKILATPTLSKILP-PPVRKIIGD   75 (87)
T ss_pred             EEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHh---HHhHCCEEEecHHhhcCC-CCcceeecc
Confidence            4444556666677777777777775544 5668888999999998   999999999999764322 344566675

Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.

>PHA03075 glutaredoxin-like protein; Provisional

Probab=80.66  E-value=2.8  Score=33.26  Aligned_cols=36  Identities=14%  Similarity=0.124  Sum_probs=30.2

Q ss_pred             CEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeC
Q 018973          140 KLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMG  178 (348)
Q Consensus       140 k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~  178 (348)
                      |.+++.|.-|-|+-|+.....+.+|..+|   .++.||+
T Consensus         2 K~tLILfGKP~C~vCe~~s~~l~~ledeY---~ilrVNI   37 (123)
T PHA03075          2 KKTLILFGKPLCSVCESISEALKELEDEY---DILRVNI   37 (123)
T ss_pred             CceEEEeCCcccHHHHHHHHHHHHhhccc---cEEEEEe
Confidence            56899999999999999999998888887   4555553

>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function

Probab=80.56  E-value=30  Score=28.21  Aligned_cols=104  Identities=13%  Similarity=0.246  Sum_probs=57.2

Q ss_pred             ceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhh--hhhhHHHHHHHH-hCCcEEEEEEECCCchhHHHHHHhCCC
Q 018973          232 AVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCV--KVYPTVIKLSRQ-MAGTVVFARMNGDENDSCMQFLRDMNV  308 (348)
Q Consensus       232 ~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~--~~~p~l~~la~~-~~~~v~~~~vd~~~~~~~~~l~~~~~V  308 (348)
                      ...++.+.++.++.+.+.   +...+| +-.+-|+ |.  ..+|........ .++ =.++.|=.....+..+-++.|=.
T Consensus        17 Gf~eL~T~e~Vd~~~~~~---~GTtlV-vVNSVCG-CAag~ARPa~~~al~~~kkP-D~lvTVFAGqDkEAt~~aR~yf~   90 (136)
T PF06491_consen   17 GFEELTTAEEVDEALKNK---EGTTLV-VVNSVCG-CAAGNARPAAAMALQNDKKP-DHLVTVFAGQDKEATAKAREYFE   90 (136)
T ss_dssp             T-EE--SHHHHHHHHHH-----SEEEE-EEE-SSH-HHHHTHHHHHHHHHHHSS---SEEEEEETTTSHHHHHHHHHTST
T ss_pred             CccccCCHHHHHHHHhCC---CCcEEE-EEecccc-ccccccCHHHHHHHhCCCCC-CceEEeccCCCHHHHHHHHHhcC
Confidence            355677899999999853   343443 3456677 43  345555443332 111 24555655555554445555422


Q ss_pred             ---CccceEEEEeCCeEEEEE-----eCCChHHHHHHHHHH
Q 018973          309 ---VEVPTFLFIRDGQIRGRY-----VGSGKGELIGEILRY  341 (348)
Q Consensus       309 ---~~~PTl~~~~~G~~v~~~-----~G~~~~~L~~~l~~~  341 (348)
                         .+-|++.+||||++++.+     +|.+.+.+.+-|...
T Consensus        91 ~~pPSSPS~ALfKdGelvh~ieRh~IEGr~a~~Ia~~L~~a  131 (136)
T PF06491_consen   91 PYPPSSPSIALFKDGELVHFIERHHIEGRPAEEIAENLQDA  131 (136)
T ss_dssp             TS---SSEEEEEETTEEEEEE-GGGTTTS-HHHHHHHHHHH
T ss_pred             CCCCCCchheeeeCCEEEEEeehhhcCCCCHHHHHHHHHHH
Confidence               345789999999999765     466777766666554

; PDB: 3FHK_F.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	348
2vim_A	104	X-Ray Structure Of Fasciola Hepatica Thioredoxin Le		7e-10
2vlt_A	122	Crystal Structure Of Barley Thioredoxin H Isoform 2		4e-09
1wmj_A	130	Solution Structure Of Thioredoxin Type H From Oryza		5e-09
3e3e_A	105	Human Thioredoxin Double Mutant C35s,C73r Length =		1e-08
3e3e_A	105	Human Thioredoxin Double Mutant C35s,C73r Length =		3e-05
1erw_A	105	Human Thioredoxin Double Mutant With Cys 32 Replace		1e-08
1xwa_A	111	Drospohila Thioredoxin, Oxidized, P41212 Length = 1		1e-08
3qfa_C	116	Crystal Structure Of The Human Thioredoxin Reductas		2e-08
3qfa_C	116	Crystal Structure Of The Human Thioredoxin Reductas		2e-05
2vm1_A	118	Crystal Structure Of Barley Thioredoxin H Isoform 1		2e-08
1xw9_A	106	Drospohila Thioredoxin, Oxidized, P21 Length = 106		2e-08
3trx_A	105	High-Resolution Three-Dimensional Structure Of Redu		3e-08
3trx_A	105	High-Resolution Three-Dimensional Structure Of Redu		1e-05
1xfl_A	124	Solution Structure Of Thioredoxin H1 From Arabidops		4e-08
3kd0_A	105	Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showin		4e-08
3kd0_A	105	Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showin		1e-04
3zzx_A	105	Crystallographic Structure Of Thioredoxin From Lito		4e-08
1mdi_A	105	High Resolution Solution Nmr Structure Of Mixed Dis		6e-08
2hsh_A	105	Crystal Structure Of C73s Mutant Of Human Thioredox		7e-08
2hsh_A	105	Crystal Structure Of C73s Mutant Of Human Thioredox		2e-06
2iwt_A	125	Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Compl		7e-08
1aiu_A	105	Human Thioredoxin (D60n Mutant, Reduced Form) Lengt		8e-08
1aiu_A	105	Human Thioredoxin (D60n Mutant, Reduced Form) Lengt		1e-05
1trs_A	105	The High-Resolution Three-Dimensional Solution Stru		1e-07
1trs_A	105	The High-Resolution Three-Dimensional Solution Stru		8e-05
2ifq_B	105	Crystal Structure Of S-Nitroso Thioredoxin Length =		1e-07
2ifq_B	105	Crystal Structure Of S-Nitroso Thioredoxin Length =		5e-06
2xbi_A	108	Crystal Structure Of Schistosoma Mansoni Thioredoxi		2e-07
3d21_A	139	Crystal Structure Of A Poplar Wild-Type Thioredoxin		3e-07
2xbq_A	117	Crystal Structure Of Reduced Schistosoma Mansoni Th		4e-07
3m9j_A	105	Crystal Structure Of Human Thioredoxin C6973S DOUBL		5e-07
3m9j_A	105	Crystal Structure Of Human Thioredoxin C6973S DOUBL		2e-06
2l4q_A	116	Solution Structures Of Oxidized And Reduced Thiored		6e-07
2i1u_A	121	Mycobacterium Tuberculosis Thioredoxin C Length = 1		6e-07
1ti3_A	113	Solution Structure Of The Thioredoxin H1 From Popla		7e-07
2ifq_A	105	Crystal Structure Of S-Nitroso Thioredoxin Length =		1e-06
2ifq_A	105	Crystal Structure Of S-Nitroso Thioredoxin Length =		5e-06
2i4a_A	107	Crystal Structure Of Thioredoxin From The Acidophil		2e-06
2wz9_A	153	Crystal Structure Of The Thioredoxin Domain Of Huma		3e-06
2diy_A	130	The Solution Structure Of The Thioredoxin Domain Of		3e-06
3tco_A	109	Crystallographic And Spectroscopic Characterization		3e-06
3d22_A	139	Crystal Structure Of A Poplar Thioredoxin H Mutant,		4e-06
2hxk_A	105	Crystal Structure Of S-Nitroso Thioredoxin Length =		9e-06
3nof_A	118	Mycobacterium Tuberculosis Thioredoxin C C40s Mutan		1e-05
3die_A	106	Domain Swapping Of Staphylococcus Aureus Thioredoxi		2e-05
2o7k_A	107	S. Aureus Thioredoxin Length = 107		2e-05
2yj7_A	106	Crystal Structure Of A Hyperstable Protein From The		7e-05
2j23_A	121	Cross-Reactivity And Crystal Structure Of Malassezi		7e-05
3vfi_A	104	Crystal Structure Of A Metagenomic Thioredoxin Leng		9e-05
2oe0_A	114	Crystal Structure Of Mitochondrial Thioredoxin 3 Fr		1e-04
3hxs_A	141	Crystal Structure Of Bacteroides Fragilis Trxp Leng		2e-04
1syr_A	112	Initial Structural Analysis Of Plasmodium Falciparu		2e-04
2o85_A	107	S. Aureus Thioredoxin P31t Mutant Length = 107		2e-04
1m7t_A	107	Solution Structure And Dynamics Of The Human-Escher		2e-04
3hhv_A	110	The Crystal Structure Of The Thioredoxin A2 From Su		2e-04
3hyp_A	141	Crystal Structure Of Bacteroides Fragilis Trxp_s105		3e-04
2o87_A	106	S. Aureus Thioredoxin P31s Mutant Length = 106		3e-04
1gl8_A	104	Solution Structure Of Thioredoxin M From Spinach, O		3e-04
1fb0_A	105	Crystal Structure Of Thioredoxin M From Spinach Chl		3e-04
2gzy_A	104	Solution Structures Of The Reduced Form Of Thioredo		4e-04
2fch_A	108	Crystal Structure Of Thioredoxin Mutant G74s Length		4e-04
2h71_A	108	Crystal Structure Of Thioredoxin Mutant D47e In Hex		5e-04
3dxb_A	222	Structure Of The Uhm Domain Of Puf60 Fused To Thior		6e-04
1r26_A	125	Crystal Structure Of Thioredoxin From Trypanosoma B		6e-04
1v98_A	140	Crystal Structure Analysis Of Thioredoxin From Ther		7e-04
1zzy_A	108	Crystal Structure Of Thioredoxin Mutant L7v Length		7e-04
1xob_A	108	Thioredoxin (Reduced Dithio Form), Nmr, 20 Structur		7e-04
2eir_A	108	Design Of Disulfide-Linked Thioredoxin Dimers And M		7e-04
2eio_A	108	Design Of Disulfide-Linked Thioredoxin Dimers And M		7e-04
2h76_A	108	Crystal Structure Of Thioredoxin Mutant D10e In Hex		7e-04
2h75_A	108	Crystal Structure Of Thioredoxin Mutant D13e In Hex		7e-04
2h70_A	108	Crystal Structure Of Thioredoxin Mutant D9e In Hexa		7e-04
2h74_A	108	Crystal Structure Of Thioredoxin Mutant D2e In Hexa		7e-04
2trx_A	108	Crystal Structure Of Thioredoxin From Escherichia C		7e-04
2h73_A	108	Crystal Structure Of Thioredoxin Mutant D43e In Hex		7e-04
2tir_A	108	Crystal Structure Analysis Of A Mutant Escherichia		8e-04

>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin Length = 104

Iteration: 1
 Score = 61.2 bits (147), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 36/107 (33%), Positives = 65/107 (60%), Gaps = 6/107 (5%)
Query: 236 LHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDE 295
           L +  D+EKLI+++K   +LIV+D   + CGPC  + P V  L++++   V FA+++ D+
Sbjct: 4   LATAADLEKLINENK--GRLIVVDFFAQWCGPCRNIAPKVEALAKEIP-EVEFAKVDVDQ 60
Query: 296 NDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQ 342
           N+         +V  +PTF+FI+DG+   R+ G+ + +L   I R++
Sbjct: 61  NEEAAA---KYSVTAMPTFVFIKDGKEVDRFSGANETKLRETITRHK 104

>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The Oxidized State Length = 122

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 57/106 (53%), Gaps = 4/106 (3%)
Query: 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
           V+ +HS E     I++    +KL+V+D     CGPC  + P    L+++     VF +++
Sbjct: 14  VISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPNA-VFLKVD 72
Query: 293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEI 338
            DE     +     +V  +PTFLF+++G ++ R VG+ K EL  ++
Sbjct: 73  VDELKPIAE---QFSVEAMPTFLFMKEGDVKDRVVGAIKEELTAKV 115

>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa Length = 130

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 59/111 (53%), Gaps = 4/111 (3%)
Query: 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
           V+  H+K++ +  +   K   K++++D     CGPC  + P   + +++  G V F +++
Sbjct: 16  VIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAV-FLKVD 74
Query: 293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQG 343
            DE     +     NV  +PTFLFI+DG    + VG+ K +L   I+++ G
Sbjct: 75  VDE---LKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVG 122

>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r Length = 105

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180
           VK++ S   F EAL  A +KLVVV+F+A+    S  I PF   LS + ++V F+ V  D+
Sbjct: 2   VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 181 SEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
            +     CE   +K++P F F+K  +K+ E  G   ++L
Sbjct: 62  CQDVASECE---VKRMPTFQFFKKGQKVGEFSGANKEKL 97

>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r Length = 105

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
           V Q+ SK   ++ +D      KL+V+D     CGP   + P    LS + +  V+F  ++
Sbjct: 2   VKQIESKTAFQEALD--AAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYS-NVIFLEVD 58
Query: 293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEI 338
            D+   C     +  V  +PTF F + GQ  G + G+ K +L   I
Sbjct: 59  VDD---CQDVASECEVKRMPTFQFFKKGQKVGEFSGANKEKLEATI 101

>pdb|1ERW|A Chain A, Human Thioredoxin Double Mutant With Cys 32 Replaced By Ser And Cys 35 Replaced By Ser Length = 105

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180
           VK++ S   F EAL  A +KLVVV+F+A+ S  S  I PF   LS + ++V F+ V  D+
Sbjct: 2   VKQIESKTAFQEALDAAGDKLVVVDFSATWSGPSKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 181 SEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
            +     CE   +K +P F F+K  +K+ E  G   ++L
Sbjct: 62  CQDVASECE---VKCMPTFQFFKKGQKVGEFSGANKEKL 97

>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212 Length = 111

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 5/104 (4%)
Query: 231 SAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFAR 290
           + V Q+  K D++  +   K   KL+VLD     CGPC  + P +++LS Q A  VV  +
Sbjct: 5   AMVYQVKDKADLDGQLT--KASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLK 62
Query: 291 MNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGEL 334
           ++ DE   C     + N+  +PTF+F+++G     + G+    L
Sbjct: 63  VDVDE---CEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRL 103

>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin Reductase-Thioredoxin Complex Length = 116

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180
           VK++ S   F EAL  A +KLVVV+F+A+    S  I PF   LS + ++V F+ V  D+
Sbjct: 13  VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDD 72
Query: 181 SEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
            +     CE   +K +P F F+K  +K+ E  G   ++L
Sbjct: 73  CQDVASECE---VKSMPTFQFFKKGQKVGEFSGANKEKL 108

>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin Reductase-Thioredoxin Complex Length = 116

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 232 AVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARM 291
           +V Q+ SK   ++ +D      KL+V+D     CGP   + P    LS + +  V+F  +
Sbjct: 12  SVKQIESKTAFQEALD--AAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYS-NVIFLEV 68
Query: 292 NGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEI 338
           + D+   C     +  V  +PTF F + GQ  G + G+ K +L   I
Sbjct: 69  DVDD---CQDVASECEVKSMPTFQFFKKGQKVGEFSGANKEKLEATI 112

>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1 Crystallized Using Ammonium Sulfate As Precipitant Length = 118

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 12/121 (9%)
Query: 231 SAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFAR 290
            AV+  H+K++ +  + + K   KL+++D     CGPC  + P   + +++  G  +F +
Sbjct: 6   GAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGA-IFLK 64
Query: 291 MNGDENDSCMQFLRDM----NVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQGVRV 346
           ++ DE       L+D+    NV  +PTFLFI+DG+     VG  K ++  +I+   G   
Sbjct: 65  VDVDE-------LKDVAEAYNVEAMPTFLFIKDGEKVDSVVGGRKDDIHTKIVALMGSAS 117
Query: 347 T 347
           T
Sbjct: 118 T 118

>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21 Length = 106

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 5/102 (4%)
Query: 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
           V Q+  K D++  +   K   KL+VLD     CGPC  + P +++LS Q A  VV  +++
Sbjct: 2   VYQVKDKADLDGQLT--KASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVD 59
Query: 293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGEL 334
            DE   C     + N+  +PTF+F+++G     + G+    L
Sbjct: 60  VDE---CEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRL 98

>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced Recombinant Human Thioredoxin In Solution Length = 105

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180
           VK++ S   F EAL  A +KLVVV+F+A+       I PF   LS + ++V F+ V  D+
Sbjct: 2   VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 181 SEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
            +     CE   +K  P F F+K  +K+ E  G   ++L
Sbjct: 62  CQDVASECE---VKCTPTFQFFKKGQKVGEFSGANKEKL 97

>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced Recombinant Human Thioredoxin In Solution Length = 105

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
           V Q+ SK   ++ +D      KL+V+D     CGPC  + P    LS + +  V+F  ++
Sbjct: 2   VKQIESKTAFQEALD--AAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS-NVIFLEVD 58
Query: 293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEI 338
            D+   C     +  V   PTF F + GQ  G + G+ K +L   I
Sbjct: 59  VDD---CQDVASECEVKCTPTFQFFKKGQKVGEFSGANKEKLEATI 101

>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis Thaliana Length = 124

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 224 LYYGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMA 283
           L        V+  H+ E   + +      + L+V+D     CGPC  + P    L++++ 
Sbjct: 9   LEMASEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP 68
Query: 284 GTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRY 341
             V+F +++ DE  S      D  +  +PTF+F+++G+I  + VG+ K EL   I ++
Sbjct: 69  N-VLFLKVDTDELKSVA---SDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKH 122

>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing Cadmium Chloride Bound To The Active Site Length = 105

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 57/99 (57%), Gaps = 3/99 (3%)
Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180
           VK++ S   F EAL  A +KLVVV+F+A+    S  I PF   LS + ++V F+ V  D+
Sbjct: 2   VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 181 SEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
           S+   ++    ++K +P F F+K  +K+ E  G   ++L
Sbjct: 62  SQ---DVASESEVKSMPTFQFFKKGQKVGEFSGANKEKL 97

>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing Cadmium Chloride Bound To The Active Site Length = 105

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
           V Q+ SK   ++ +D      KL+V+D     CGP   + P    LS + +  V+F  ++
Sbjct: 2   VKQIESKTAFQEALD--AAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYS-NVIFLEVD 58
Query: 293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEI 338
            D++        +  V  +PTF F + GQ  G + G+ K +L   I
Sbjct: 59  VDDSQDVA---SESEVKSMPTFQFFKKGQKVGEFSGANKEKLEATI 101

>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus Vannamei Length = 105

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 6/89 (6%)
Query: 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
           V Q+  +ED  K +++     KL+V+D     CGPC  + P + +LS+ M+  VVF +++
Sbjct: 2   VYQVKDQEDFTKQLNE--AGNKLVVIDFYATWCGPCKMIAPKLEELSQSMS-DVVFLKVD 58
Query: 293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQ 321
            DE   C    +D  +  +PTFLF+++GQ
Sbjct: 59  VDE---CEDIAQDNQIACMPTFLFMKNGQ 84

>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide Intermediate Between Mutant Human Thioredoxin And A 13 Residue Peptide Comprising Its Target Site In Human Nfkb Length = 105

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180
           VK++ S   F EAL  A +KLVVV+F+A+    +  I PF   LS + ++V F+ V  D+
Sbjct: 2   VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPAKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 181 SEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
           ++   ++    ++K  P F F+K  +K+ E  G   ++L
Sbjct: 62  AQ---DVASEAEVKATPTFQFFKKGQKVGEFSGANKEKL 97

>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1 Oxidized With H2o2 Length = 105

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180
           VK++ S   F EAL  A +KLVVV+F+A+       I PF   LS + ++V F+ V  D+
Sbjct: 2   VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 181 SEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
            +     CE   +K +P F F+K  +K+ E  G   ++L
Sbjct: 62  CQDVASECE---VKSMPTFQFFKKGQKVGEFSGANKEKL 97

>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1 Oxidized With H2o2 Length = 105

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
           V Q+ SK   ++ +D      KL+V+D     CGPC  + P    LS + +  V+F  ++
Sbjct: 2   VKQIESKTAFQEALD--AAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS-NVIFLEVD 58
Query: 293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEI 338
            D+   C     +  V  +PTF F + GQ  G + G+ K +L   I
Sbjct: 59  VDD---CQDVASECEVKSMPTFQFFKKGQKVGEFSGANKEKLEATI 101

>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With The Target Protein Basi Length = 125

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 56/106 (52%), Gaps = 4/106 (3%)
Query: 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
           V+ +HS E     I++    +KL+V+D     CGP   + P    L+++    V F +++
Sbjct: 17  VISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPSRIMAPVFADLAKKFPNAV-FLKVD 75
Query: 293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEI 338
            DE     +     +V  +PTFLF+++G ++ R VG+ K EL  ++
Sbjct: 76  VDELKPIAE---QFSVEAMPTFLFMKEGDVKDRVVGAIKEELTAKV 118

>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form) Length = 105

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180
           VK++ S   F EAL  A +KLVVV+F+A+       I PF   LS + ++V F+ V  ++
Sbjct: 2   VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVND 61
Query: 181 SEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
            +     CE   +K +P F F+K  +K+ E  G   ++L
Sbjct: 62  CQDVASECE---VKCMPTFQFFKKGQKVGEFSGANKEKL 97

>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form) Length = 105

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
           V Q+ SK   ++ +D      KL+V+D     CGPC  + P    LS + +  V+F  + 
Sbjct: 2   VKQIESKTAFQEALD--AAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS-NVIFLEV- 57
Query: 293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEI 338
            D ND C     +  V  +PTF F + GQ  G + G+ K +L   I
Sbjct: 58  -DVND-CQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101

>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures Of The Oxidized And Reduced States Of Human Thioredoxin Length = 105

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180
           VK++ S   F EAL  A +KLVVV+F+A+       I PF   LS + ++V F+ V  D+
Sbjct: 2   VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 181 SEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
           ++   ++    ++K  P F F+K  +K+ E  G   ++L
Sbjct: 62  AQ---DVASEAEVKATPTFQFFKKGQKVGEFSGANKEKL 97

>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures Of The Oxidized And Reduced States Of Human Thioredoxin Length = 105

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 6/106 (5%)
Query: 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
           V Q+ SK   ++ +D      KL+V+D     CGPC  + P    LS + +  V+F  ++
Sbjct: 2   VKQIESKTAFQEALD--AAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS-NVIFLEVD 58
Query: 293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEI 338
            D+         +  V   PTF F + GQ  G + G+ K +L   I
Sbjct: 59  VDDAQDVAS---EAEVKATPTFQFFKKGQKVGEFSGANKEKLEATI 101

>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin Length = 105

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180
           VK++ S   F EAL  A +KLVVV+F+A+       I PF   LS + ++V F+ V  D+
Sbjct: 2   VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 181 SEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
            +     CE   +K +P F F+K  +K+ E  G   ++L
Sbjct: 62  CQDVASECE---VKCMPTFQFFKKGQKVGEFSGANKEKL 97

>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin Length = 105

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
           V Q+ SK   ++ +D      KL+V+D     CGPC  + P    LS + +  V+F  ++
Sbjct: 2   VKQIESKTAFQEALD--AAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS-NVIFLEVD 58
Query: 293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEI 338
            D+   C     +  V  +PTF F + GQ  G + G+ K +L   I
Sbjct: 59  VDD---CQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101

>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At 1.6 Angstrom Length = 108

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 56/101 (55%), Gaps = 7/101 (6%)
Query: 229 SHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVF 288
           S S +++L    D+E L++ HK   KL+V+D     CGPC  + P   +LS +     +F
Sbjct: 2   SMSKLIELKQDGDLESLLEQHK--NKLVVVDFFATWCGPCKTIAPLFKELSEKY--DAIF 57
Query: 289 ARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS 329
            +++ D+ +   +  R  N+  +PTF+ I++G+  G  VG+
Sbjct: 58  VKVDVDKLE---ETARKYNISAMPTFIAIKNGEKVGDVVGA 95

>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H, Pttrxh4 Length = 139

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND 297
           +KE  ++ + +   D K+++ +   + CGPC ++ P  I+LS     +++F  ++ DE  
Sbjct: 31  TKERWDQKLSEASRDGKIVLANFSARWCGPCKQIAPYYIELSENYP-SLMFLVIDVDE-- 87
Query: 298 SCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGEL 334
               F     +   PTF F+RDGQ   + VG+ K EL
Sbjct: 88  -LSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPEL 123

>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni Thioredoxin Pre-Protein At 1.7 Angstrom Length = 117

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 7/99 (7%)
Query: 231 SAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFAR 290
           S +++L    D+E L++ HK   KL+V+D     CGPC  + P   +LS +     +F +
Sbjct: 13  SELIELKQDGDLESLLEQHK--NKLVVVDFFATWCGPCKTIAPLFKELSEKYDA--IFVK 68
Query: 291 MNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS 329
           ++ D+ +      R  N+  +PTF+ I++G+  G  VG+
Sbjct: 69  VDVDKLEETA---RKYNISAMPTFIAIKNGEKVGDVVGA 104

>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE MUTANT, REDUCED Form Length = 105

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180
           VK++ S   F EAL  A +KLVVV+F+A+       I PF   LS + ++V F+ V  D+
Sbjct: 2   VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 181 SEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
            +   ++    ++K +P F F+K  +K+ E  G   ++L
Sbjct: 62  CQ---DVASESEVKSMPTFQFFKKGQKVGEFSGANKEKL 97

>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE MUTANT, REDUCED Form Length = 105

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
           V Q+ SK   ++ +D      KL+V+D     CGPC  + P    LS + +  V+F  ++
Sbjct: 2   VKQIESKTAFQEALD--AAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS-NVIFLEVD 58
Query: 293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEI 338
            D+   C     +  V  +PTF F + GQ  G + G+ K +L   I
Sbjct: 59  VDD---CQDVASESEVKSMPTFQFFKKGQKVGEFSGANKEKLEATI 101

>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C From M. Tb Length = 116

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 253 QKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVP 312
            K +++D     CGPC  V P + +++ + A  +  A+++ D N    +  R+  VV +P
Sbjct: 25  NKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNP---ETARNFQVVSIP 81
Query: 313 TFLFIRDGQIRGRYVGS-GKGELIGEI 338
           T +  +DGQ   R VG+ GK  L+ E+
Sbjct: 82  TLILFKDGQPVKRIVGAKGKAALLREL 108

>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C Length = 121

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 253 QKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVP 312
            K +++D     CGPC  V P + +++ + A  +  A+++ D N    +  R+  VV +P
Sbjct: 30  NKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNP---ETARNFQVVSIP 86
Query: 313 TFLFIRDGQIRGRYVGS-GKGELIGEI 338
           T +  +DGQ   R VG+ GK  L+ E+
Sbjct: 87  TLILFKDGQPVKRIVGAKGKAALLREL 113

>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A Cppc Active Site Variant Length = 113

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/102 (29%), Positives = 56/102 (54%), Gaps = 4/102 (3%)
Query: 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
           V+  H+ +  ++  +  K  QKLIV+D     C PC  + P   +L+++    V F +++
Sbjct: 6   VIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP-NVTFLKVD 64
Query: 293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGEL 334
            DE  +  +   + NV  +PTF+F++DG++  + VG+ K  L
Sbjct: 65  VDELKAVAE---EWNVEAMPTFIFLKDGKLVDKTVGADKDGL 103

>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin Length = 105

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180
           VK++ S   F EAL  A +KLVVV+F+A+       I PF   LS + ++V F+ V  D+
Sbjct: 2   VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 181 SEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
            +   ++    ++K +P F F+K  +K+ E  G   ++L
Sbjct: 62  CQ---DVASEXEVKCMPTFQFFKKGQKVGEFSGANKEKL 97

>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin Length = 105

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
           V Q+ SK   ++ +D      KL+V+D     CGPC  + P    LS + +  V+F  ++
Sbjct: 2   VKQIESKTAFQEALD--AAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS-NVIFLEVD 58
Query: 293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEI 338
            D+   C     +  V  +PTF F + GQ  G + G+ K +L   I
Sbjct: 59  VDD---CQDVASEXEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101

>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile Acetobacter Aceti Length = 107

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 255 LIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTF 314
           L+++D   + CGPC  + P + ++ ++ AG V  A++N D+N       +   V  +PT 
Sbjct: 22  LVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPETPNAYQ---VRSIPTL 78
Query: 315 LFIRDGQIRGRYVGS 329
           + +RDG++  + VG+
Sbjct: 79  MLVRDGKVIDKKVGA 93

>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2 Length = 153

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 126 SIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTK 185
           S  +F+E LRL    L+VV F A  +   +++   M +L+++   V F+ +   E+E   
Sbjct: 19  SAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKL---EAEGVP 75
Query: 186 ELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQLMGDVLYYGDSHS 231
           E+ E+ +I  VP F F+K+ +KI   +G    +L   V  +  S S
Sbjct: 76  EVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHASSGS 121

>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human Thioredoxin-Like Protein 2 Length = 130

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 126 SIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTK 185
           S  +F+E LRL    L+VV F A  +   +++   M +L+++   V F+ +   E+E   
Sbjct: 25  SAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKL---EAEGVP 81
Query: 186 ELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQLMGDVLYYGDS 229
           E+ E+ +I  VP F F+K+ +KI   +G    +L   V  +  S
Sbjct: 82  EVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHASS 125

>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of Sulfolobus Solfataricus Trxa1 Provide Insights Into The Determinants Of Thioredoxin Fold Stability Length = 109

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 239 KEDVEKLIDDHKVDQ-----KLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNG 293
           KEDV  ++ +   D+     KL+++D   + C PC    P   K++ +  G  VF R+N 
Sbjct: 2   KEDVTLVLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNV 61
Query: 294 DENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS 329
           DEN    +     +V+ +PT L   +GQ+    VG+
Sbjct: 62  DENQ---KIADKYSVLNIPTTLIFVNGQLVDSLVGA 94

>pdb|3D22|A Chain A, Crystal Structure Of A Poplar Thioredoxin H Mutant, Pttrxh4c61s Length = 139

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Query: 238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND 297
           +KE  ++ + +   D K+++ +   + CGP  ++ P  I+LS     +++F  ++ DE  
Sbjct: 31  TKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYP-SLMFLVIDVDE-- 87
Query: 298 SCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGEL 334
               F     +   PTF F+RDGQ   + VG+ K EL
Sbjct: 88  -LSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPEL 123

>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin Length = 105

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180
           VK++ S   F EAL  A +KLVVV+F+A+       I PF   LS + ++V F   +  +
Sbjct: 2   VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIF---LEVD 58
Query: 181 SEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
            +  +++    ++K +P F F+K  +K+ E  G   ++L
Sbjct: 59  VDDXQDVASEXEVKCMPTFQFFKKGQKVGEFSGANKEKL 97

>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant Length = 118

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 253 QKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVP 312
            K +++D     CGP   V P + +++ + A  +  A+++ D N    +  R+  VV +P
Sbjct: 27  NKPVLVDFWATWCGPSKMVAPVLEEIATERATDLTVAKLDVDTNP---ETARNFQVVSIP 83
Query: 313 TFLFIRDGQIRGRYVGS-GKGELIGEI 338
           T +  +DGQ   R VG+ GK  L+ E+
Sbjct: 84  TLILFKDGQPVKRIVGAKGKAALLREL 110

>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a Mutant Length = 106

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 9/111 (8%)
Query: 229 SHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVF 288
           SH A+V++   +       D KV+  + ++D     CGPC  + P + +L+    G    
Sbjct: 1   SHMAIVKVTDADF------DSKVESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADI 54
Query: 289 ARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEIL 339
            +++ DEN S         V+ +PT +  +DGQ   + VG    E + E+L
Sbjct: 55  LKLDVDENPSTA---AKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVL 102

>pdb|2O7K|A Chain A, S. Aureus Thioredoxin Length = 107

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 9/111 (8%)
Query: 229 SHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVF 288
           SH A+V++   +       D KV+  + ++D     CGPC  + P + +L+    G    
Sbjct: 2   SHMAIVKVTDADF------DSKVESGVQLVDFWATWCGPCKMIAPVLEELAADYEGKADI 55
Query: 289 ARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEIL 339
            +++ DEN S         V+ +PT +  +DGQ   + VG    E + E+L
Sbjct: 56  LKLDVDENPSTA---AKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVL 103

>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The Precambrian Period Length = 106

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 254 KLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN-DSCMQFLRDMNVVEVP 312
           K +++D     CGPC  + P + +L+++  G V   ++N DEN ++  Q+     +  +P
Sbjct: 20  KPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNTAAQY----GIRSIP 75
Query: 313 TFLFIRDGQIRGRYVGSGKGELIGE 337
           T L  ++GQ+  R VG+   E + E
Sbjct: 76  TLLLFKNGQVVDRLVGAQPKEALKE 100

>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia Sympodialis Thioredoxin (Mala S 13), A Member Of A New Pan- Allergen Family Length = 121

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 254 KLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDSCMQFLRDMNVVEVP 312
           K++V+D     CGPC  + P   K+S   AG  V F +++ DE     Q  +++ +  +P
Sbjct: 34  KVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQS---QIAQEVGIRAMP 90
Query: 313 TFLFIRDGQIRGRYVGSGKGELIGEILRY 341
           TF+F ++GQ     VG+   +L   I ++
Sbjct: 91  TFVFFKNGQKIDTVVGADPSKLQAAITQH 119

>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin Length = 104

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 265 CGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRG 324
           C PC K+ PT  +++ QM G + FA M+ ++ +  M    ++N+  +P+     DG IR 
Sbjct: 29  CQPCKKMKPTFEEMASQMEGDIRFAYMDAEDAEKTMA---ELNIRTLPSLALFVDGMIRE 85
Query: 325 RYVGS 329
            + G+
Sbjct: 86  VFSGT 90

>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From Saccharomyces Cerevisiae Length = 114

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 8/115 (6%)
Query: 220 MGDVLYYGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLS 279
           MG   ++  S++++ +L +  +   LI   K + KL V+D     CGPC  + P + KL 
Sbjct: 1   MGHHHHHHSSYTSITKLTNLTEFRNLI---KQNDKL-VIDFYATWCGPCKMMQPHLTKLI 56
Query: 280 RQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGEL 334
            Q    V F + + DE+       ++  V  +PTF+  +DGQ+ G+ +G+    L
Sbjct: 57  -QAYPDVRFVKCDVDESPD---IAKECEVTAMPTFVLGKDGQLIGKIIGANPTAL 107

>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp Length = 141

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 10/95 (10%)
Query: 230 HSAVVQLHSKEDVEKLID--DHKVDQKLI-----VLDVGLKHCGPCVKVYPTVIKLSRQM 282
            S  + L   E ++K+ D  +H  + K +     ++D     CGPC  V P + +LS++ 
Sbjct: 21  QSGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEY 80
Query: 283 AGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFI 317
           AG +   ++N D+     +  RD  +  +PT  F+
Sbjct: 81  AGKIYIYKVNVDKEP---ELARDFGIQSIPTIWFV 112

>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum Thioredoxin Length = 112

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180
           VK V S  EFD  +  ++N+LV+V+F A       +I PF  + S+    + FI V  DE
Sbjct: 10  VKIVTSQAEFDSII--SQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDE 67
Query: 181 SEKTKELCEREKIKKVPHFSFYKS 204
                E+ E+E I  +P F  YK+
Sbjct: 68  ---VSEVTEKENITSMPTFKVYKN 88

>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant Length = 107

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 9/111 (8%)
Query: 229 SHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVF 288
           SH A+V++   +       D KV+  + ++D     CG C  + P + +L+    G    
Sbjct: 2   SHMAIVKVTDADF------DSKVESGVQLVDFWATWCGTCKMIAPVLEELAADYEGKADI 55
Query: 289 ARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEIL 339
            +++ DEN S         V+ +PT +  +DGQ   + VG    E + E+L
Sbjct: 56  LKLDVDENPSTA---AKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVL 103

>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia Coli Thioredoxin Chimera: Insights Into Thermodynamic Stability Length = 107

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180
           VK++ S   F EAL  A +KLVVV+F+A+       I PF   LS + ++V F+ V  D+
Sbjct: 2   VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 181 SEKTKELCEREKIKKVPHFSFYKSME 206
           ++   ++  +  I+ +P    +K+ E
Sbjct: 62  AQ---DVAPKYGIRGIPTLLLFKNGE 84

>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From Sulfolobus Solfataricus Length = 110

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/87 (24%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 244 KLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN-DSCMQF 302
           K  D+     K++V+D   + C PC+ + P + +L+      V F ++N +E+ D  M++
Sbjct: 14  KNFDEFITKNKIVVVDFWAEWCAPCLILAPVIEELANDYP-QVAFGKLNTEESQDIAMRY 72
Query: 303 LRDMNVVEVPTFLFIRDGQIRGRYVGS 329
                ++ +PT +F ++G++  + +G+
Sbjct: 73  ----GIMSLPTIMFFKNGELVDQILGA 95

>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g Mutant Length = 141

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 10/95 (10%)
Query: 230 HSAVVQLHSKEDVEKLID--DHKVDQKLI-----VLDVGLKHCGPCVKVYPTVIKLSRQM 282
            S  + L   E ++K+ D  +H  + K +     ++D     CGPC  V P + +LS++ 
Sbjct: 21  QSGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEY 80
Query: 283 AGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFI 317
           AG +   ++N D+     +  RD  +  +PT  F+
Sbjct: 81  AGKIYIYKVNVDKEP---ELARDFGIQGIPTIWFV 112

>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant Length = 106

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 248 DHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMN 307
           D KV+  + ++D     CG C  + P + +L+    G     +++ DEN S         
Sbjct: 14  DSKVESGVQLVDFWATWCGSCKMIAPVLEELAADYEGKADILKLDVDENPSTA---AKYE 70
Query: 308 VVEVPTFLFIRDGQIRGRYVGSGKGELIGEIL 339
           V+ +PT +  +DGQ   + VG    E + E+L
Sbjct: 71  VMSIPTLIVFKDGQPVDKVVGFQPKENLAEVL 102

>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized Form Length = 104

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL 315
           +++D     CGPC  + P + +L+++ +G +   ++N DE           N+  +PT L
Sbjct: 20  VMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPG---IATQYNIRSIPTVL 76
Query: 316 FIRDGQIRGRYVGS-GKGELIGEILRY 341
           F ++G+ +   +G+  K  L   I +Y
Sbjct: 77  FFKNGERKESIIGAVPKSTLTDSIEKY 103

>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach Chloroplast (Reduced Form) Length = 105

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL 315
           +++D     CGPC  + P + +L+++ +G +   ++N DE           N+  +PT L
Sbjct: 21  VMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPG---IATQYNIRSIPTVL 77
Query: 316 FIRDGQIRGRYVGS-GKGELIGEILRY 341
           F ++G+ +   +G+  K  L   I +Y
Sbjct: 78  FFKNGERKESIIGAVPKSTLTDSIEKY 104

>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin From Bacillus Subtilis Length = 104

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 253 QKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVP 312
           + +++ D     CGPC  + P + +L ++M   +   +++ DEN    +      V+ +P
Sbjct: 17  EGVVLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDEN---QETAGKYGVMSIP 73
Query: 313 TFLFIRDGQIRGRYVGSGKGELIGEILR 340
           T L ++DG++    VG    E + E++ 
Sbjct: 74  TLLVLKDGEVVETSVGFKPKEALQELVN 101

>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s Length = 108

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL 315
           I++D   + CGPC  + P + +++ +  G +  A++N D+N           +  +PT L
Sbjct: 23  ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAP---KYGIRSIPTLL 79
Query: 316 FIRDGQIRGRYVGS-GKGEL 334
             ++G++    VG+  KG+L
Sbjct: 80  LFKNGEVAATKVGALSKGQL 99

>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL 315
           I++D   + CGPC  + P + +++ +  G +  A++N D+N           +  +PT L
Sbjct: 23  ILVDFWAEWCGPCKMIAPILDEIAEEYQGKLTVAKLNIDQNPGTAP---KYGIRGIPTLL 79
Query: 316 FIRDGQIRGRYVGS-GKGEL 334
             ++G++    VG+  KG+L
Sbjct: 80  LFKNGEVAATKVGALSKGQL 99

>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin Length = 222

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL 315
           I++D   + CGPC  + P + +++ +  G +  A++N D+N           +  +PT L
Sbjct: 33  ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAP---KYGIRGIPTLL 89
Query: 316 FIRDGQIRGRYVGS-GKGEL 334
             ++G++    VG+  KG+L
Sbjct: 90  LFKNGEVAATKVGALSKGQL 109

>pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei Brucei Length = 125

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Query: 230 HSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFA 289
           + +VV ++S E    ++ +      L V       CGPC  +   + K++ +   TV FA
Sbjct: 18  YPSVVDVYSVEQFRNIMSE----DILTVAWFTAVWCGPCKTIERPMEKIAYEFP-TVKFA 72
Query: 290 RMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGEL 334
           +++ D N   +   R   V+++PTF+  R G++ G  +G+  G L
Sbjct: 73  KVDADNNSEIVSKCR---VLQLPTFIIARSGKMLGHVIGANPGML 114

>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus Thermophilus Length = 140

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 3/101 (2%)
Query: 240 EDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSC 299
           E  EK          L ++D     CGPC  V P + +L+R  AG +   ++N DE+   
Sbjct: 37  EADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPG- 95
Query: 300 MQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILR 340
                   V  VPT +  R G     +VG+    ++ E LR
Sbjct: 96  --LAARYGVRSVPTLVLFRRGAPVATWVGASPRRVLEERLR 134

>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v Length = 108

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL 315
           I++D   + CGPC  + P + +++ +  G +  A++N D+N           +  +PT L
Sbjct: 23  ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAP---KYGIRGIPTLL 79
Query: 316 FIRDGQIRGRYVGS-GKGEL 334
             ++G++    VG+  KG+L
Sbjct: 80  LFKNGEVAATKVGALSKGQL 99

>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures Length = 108

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL 315
           I++D   + CGPC  + P + +++ +  G +  A++N D+N           +  +PT L
Sbjct: 23  ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAP---KYGIRGIPTLL 79
Query: 316 FIRDGQIRGRYVGS-GKGEL 334
             ++G++    VG+  KG+L
Sbjct: 80  LFKNGEVAATKVGALSKGQL 99

>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And Multimers Through Analysis Of Crystal Contacts Length = 108

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL 315
           I++D   + CGPC  + P + +++ +  G +  A++N D+N           +  +PT L
Sbjct: 23  ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAP---KYGIRGIPTLL 79
Query: 316 FIRDGQIRGRYVGS-GKGEL 334
             ++G++    VG+  KG+L
Sbjct: 80  LFKNGEVAATKVGALSKGQL 99

>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And Multimers Through Analysis Of Crystal Contacts Length = 108

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL 315
           I++D   + CGPC  + P + +++ +  G +  A++N D+N           +  +PT L
Sbjct: 23  ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAP---KYGIRGIPTLL 79
Query: 316 FIRDGQIRGRYVGS-GKGEL 334
             ++G++    VG+  KG+L
Sbjct: 80  LFKNGEVAATKVGALSKGQL 99

>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL 315
           I++D   + CGPC  + P + +++ +  G +  A++N D+N           +  +PT L
Sbjct: 23  ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAP---KYGIRGIPTLL 79
Query: 316 FIRDGQIRGRYVGS-GKGEL 334
             ++G++    VG+  KG+L
Sbjct: 80  LFKNGEVAATKVGALSKGQL 99

>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL 315
           I++D   + CGPC  + P + +++ +  G +  A++N D+N           +  +PT L
Sbjct: 23  ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAP---KYGIRGIPTLL 79
Query: 316 FIRDGQIRGRYVGS-GKGEL 334
             ++G++    VG+  KG+L
Sbjct: 80  LFKNGEVAATKVGALSKGQL 99

>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL 315
           I++D   + CGPC  + P + +++ +  G +  A++N D+N           +  +PT L
Sbjct: 23  ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAP---KYGIRGIPTLL 79
Query: 316 FIRDGQIRGRYVGS-GKGEL 334
             ++G++    VG+  KG+L
Sbjct: 80  LFKNGEVAATKVGALSKGQL 99

>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL 315
           I++D   + CGPC  + P + +++ +  G +  A++N D+N           +  +PT L
Sbjct: 23  ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAP---KYGIRGIPTLL 79
Query: 316 FIRDGQIRGRYVGS-GKGEL 334
             ++G++    VG+  KG+L
Sbjct: 80  LFKNGEVAATKVGALSKGQL 99

>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At 1.68 Angstroms Resolution Length = 108

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL 315
           I++D   + CGPC  + P + +++ +  G +  A++N D+N           +  +PT L
Sbjct: 23  ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAP---KYGIRGIPTLL 79
Query: 316 FIRDGQIRGRYVGS-GKGEL 334
             ++G++    VG+  KG+L
Sbjct: 80  LFKNGEVAATKVGALSKGQL 99

>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL 315
           I++D   + CGPC  + P + +++ +  G +  A++N D+N           +  +PT L
Sbjct: 23  ILVDFWAEWCGPCKMIAPILEEIADEYQGKLTVAKLNIDQNPGTAP---KYGIRGIPTLL 79
Query: 316 FIRDGQIRGRYVGS-GKGEL 334
             ++G++    VG+  KG+L
Sbjct: 80  LFKNGEVAATKVGALSKGQL 99

>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli Thioredoxin In Which Lysine 36 Is Replaced By Glutamic Acid Length = 108

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL 315
           I++D   + CGPC  + P + +++ +  G +  A++N D+N           +  +PT L
Sbjct: 23  ILVDFWAEWCGPCEMIAPILDEIADEYQGKLTVAKLNIDQNPGTAP---KYGIRGIPTLL 79
Query: 316 FIRDGQIRGRYVGS-GKGEL 334
             ++G++    VG+  KG+L
Sbjct: 80  LFKNGEVAATKVGALSKGQL 99

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	348
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	2e-17
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	2e-07
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	4e-17
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	3e-11
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	1e-16
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	7e-11
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	1e-16
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	3e-12
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	2e-16
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	2e-11
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	3e-16
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	1e-12
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	1e-15
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	1e-14
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	2e-15
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	8e-11
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	8e-15
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	1e-14
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	8e-15
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	6e-08
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	1e-14
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	2e-10
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	2e-14
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	4e-08
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	2e-14
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	4e-14
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	2e-14
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	5e-12
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	3e-14
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	4e-11
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	5e-14
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	1e-10
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	2e-13
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	2e-05
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	2e-13
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	2e-07
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	3e-13
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	1e-09
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	6e-13
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	3e-08
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	6e-13
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	7e-08
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	6e-12
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	5e-11
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	1e-11
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	5e-05
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	2e-10
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	6e-07
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	5e-10
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	2e-06
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	1e-04
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	5e-10
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	1e-06
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	1e-09
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	6e-08
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	1e-09
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	6e-04
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	2e-09
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	3e-09
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	4e-09
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	4e-09
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	5e-09
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	5e-09
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	6e-09
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	6e-09
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	7e-09
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	8e-09
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	8e-09
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	8e-09
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	1e-08
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	1e-08
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	1e-08
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	1e-08
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	1e-08
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	1e-08
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	1e-08
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	1e-08
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	2e-08
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	2e-08
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	2e-08
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	3e-08
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	3e-08
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	3e-08
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	4e-08
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	4e-08
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	4e-08
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	5e-08
2kuc_A	130	Putative disulphide-isomerase; structural genomics	6e-08
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	2e-07
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	3e-05
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	2e-07
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	5e-07
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	7e-07
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	9e-07
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	1e-05
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	1e-06
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	2e-06
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	3e-06
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	1e-05
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	2e-04
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	3e-06
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	1e-05
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	5e-06
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	6e-06
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	1e-05
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	1e-05
4evm_A	138	Thioredoxin family protein; structural genomics, n	4e-05
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	5e-05
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	1e-04
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	1e-04
3raz_A	151	Thioredoxin-related protein; structural genomics,	1e-04
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	2e-04
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	2e-04
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	2e-04
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	3e-04
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	3e-04
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	3e-04
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	4e-04
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	4e-04
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	5e-04
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	5e-04
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	6e-04
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	8e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A Length = 112

 Score = 75.8 bits (187), Expect = 2e-17
 Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 3/112 (2%)

Query: 232 AVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARM 291
           +V+ + SK   +  +   K + K IV+D     CGPC  + P    LS   AG V+F ++
Sbjct: 3   SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKV 62

Query: 292 NGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQG 343
           + D             +  +PTF   +DG      VG+ + +L   + ++  
Sbjct: 63  DVDAVA---AVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLKALVAKHAA 111

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A Length = 112

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 28/108 (25%), Positives = 39/108 (36%), Gaps = 16/108 (14%)

Query: 120 RVKKVHSIEEFDEALRLAK--NKLVVVEFAAS-----RSLDSSKIYPFMVDLSRQ-CNDV 171
            V  + S   +D  L   K  +K +VV+F A+     +      I P    LS      V
Sbjct: 3   SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCK-----MIAPLFETLSNDYAGKV 57

Query: 172 EFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
            F+ V  D      E      I  +P F  YK   K  +  G   D+L
Sbjct: 58  IFLKVDVDAVAAVAEAAG---ITAMPTFHVYKDGVKADDLVGASQDKL 102

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A Length = 118

 Score = 75.5 bits (186), Expect = 4e-17
 Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 4/114 (3%)

Query: 230 HSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFA 289
             AV+  H+K++ +  + + K   KL+++D     CGPC  + P   + +++  G  +F 
Sbjct: 5   EGAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPG-AIFL 63

Query: 290 RMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQG 343
           +++ DE           NV  +PTFLFI+DG+     VG  K ++  +I+   G
Sbjct: 64  KVDVDE---LKDVAEAYNVEAMPTFLFIKDGEKVDSVVGGRKDDIHTKIVALMG 114

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A Length = 118

 Score = 58.9 bits (143), Expect = 3e-11
 Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 6/120 (5%)

Query: 115 APRDERVKKVHSIEEFDEALRLAKN--KLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVE 172
           A  +  V   H+ +EFD  +   K+  KLV+++F AS       I P   + +++     
Sbjct: 2   AAEEGAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAI 61

Query: 173 FILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQLMGDVL-YYGDSHS 231
           F+ V  DE +   ++ E   ++ +P F F K  EK+    G   D +   ++   G + +
Sbjct: 62  FLKVDVDELK---DVAEAYNVEAMPTFLFIKDGEKVDSVVGGRKDDIHTKIVALMGSAST 118

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} Length = 130

 Score = 74.8 bits (184), Expect = 1e-16
 Identities = 32/114 (28%), Positives = 59/114 (51%), Gaps = 4/114 (3%)

Query: 230 HSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFA 289
              V+  H+K++ +  +   K   K++++D     CGPC  + P   + +++  G  VF 
Sbjct: 13  EGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPG-AVFL 71

Query: 290 RMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQG 343
           +++ DE     +     NV  +PTFLFI+DG    + VG+ K +L   I+++ G
Sbjct: 72  KVDVDELKEVAE---KYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVG 122

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} Length = 130

 Score = 58.2 bits (141), Expect = 7e-11
 Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 5/113 (4%)

Query: 109 APGTKNAPRDERVKKVHSIEEFDEALRLAK--NKLVVVEFAASRSLDSSKIYPFMVDLSR 166
           A     A  +  V   H+ +EFD  +  AK   K+V+++F AS       I P   + ++
Sbjct: 4   AAEEGMAAEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAK 63

Query: 167 QCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
           +     F+ V  DE +   E+ E+  ++ +P F F K   +  +  G   D L
Sbjct: 64  KFPGAVFLKVDVDELK---EVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDL 113

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* Length = 122

 Score = 74.3 bits (183), Expect = 1e-16
 Identities = 32/115 (27%), Positives = 60/115 (52%), Gaps = 4/115 (3%)

Query: 231 SAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFAR 290
           + V+ +HS E     I++    +KL+V+D     CGPC  + P    L+++     VF +
Sbjct: 12  AEVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPN-AVFLK 70

Query: 291 MNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQGVR 345
           ++ DE     +     +V  +PTFLF+++G ++ R VG+ K EL  ++  +   +
Sbjct: 71  VDVDELKPIAE---QFSVEAMPTFLFMKEGDVKDRVVGAIKEELTAKVGLHAAAQ 122

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* Length = 122

 Score = 62.0 bits (151), Expect = 3e-12
 Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 5/113 (4%)

Query: 109 APGTKNAPRDERVKKVHSIEEFDEALRLAKN--KLVVVEFAASRSLDSSKIYPFMVDLSR 166
           A     A     V  VHS+E++   +  A    KLVV++F AS       + P   DL++
Sbjct: 2   AASATAAAVAAEVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAK 61

Query: 167 QCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
           +  +  F+ V  DE +    + E+  ++ +P F F K  +      G   ++L
Sbjct: 62  KFPNAVFLKVDVDELK---PIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEEL 111

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 Length = 124

 Score = 73.6 bits (181), Expect = 2e-16
 Identities = 30/115 (26%), Positives = 57/115 (49%), Gaps = 4/115 (3%)

Query: 229 SHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVF 288
               V+  H+ E   + +      + L+V+D     CGPC  + P    L++++   V+F
Sbjct: 14  EEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPN-VLF 72

Query: 289 ARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQG 343
            +++ DE  S      D  +  +PTF+F+++G+I  + VG+ K EL   I ++  
Sbjct: 73  LKVDTDELKSVAS---DWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKHLA 124

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 Length = 124

 Score = 59.7 bits (145), Expect = 2e-11
 Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 5/107 (4%)

Query: 115 APRDERVKKVHSIEEFDEALRLAKN--KLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVE 172
           A  + +V   H++E ++E L+ A     LVVV+F AS       I PF  DL+++  +V 
Sbjct: 12  ASEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVL 71

Query: 173 FILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
           F+ V  DE +    +     I+ +P F F K  + + +  G   D+L
Sbjct: 72  FLKVDTDELK---SVASDWAIQAMPTFMFLKEGKILDKVVGAKKDEL 115

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A Length = 139

 Score = 73.7 bits (181), Expect = 3e-16
 Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 4/113 (3%)

Query: 229 SHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVF 288
           +   V  + +KE  ++ + +   D K+++ +   + CGP  ++ P  I+LS      ++F
Sbjct: 22  AGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYPS-LMF 80

Query: 289 ARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRY 341
             ++ DE      F     +   PTF F+RDGQ   + VG+ K EL  +I   
Sbjct: 81  LVIDVDE---LSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPELHKKITAI 130

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A Length = 139

 Score = 63.7 bits (155), Expect = 1e-12
 Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 5/104 (4%)

Query: 118 DERVKKVHSIEEFDEALRLAK--NKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFIL 175
              V  + + E +D+ L  A    K+V+  F+A     S +I P+ ++LS     + F++
Sbjct: 23  GGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYPSLMFLV 82

Query: 176 VMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
           +  DE     +     +IK  P F F +  +++ +  G    +L
Sbjct: 83  IDVDELS---DFSASWEIKATPTFFFLRDGQQVDKLVGANKPEL 123

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* Length = 116

 Score = 71.2 bits (175), Expect = 1e-15
 Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 6/114 (5%)

Query: 228 DSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVV 287
             H +V Q+ SK   ++ +D      KL+V+D     CGP   + P    LS + +  V+
Sbjct: 8   HHHGSVKQIESKTAFQEALDAAG--DKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN-VI 64

Query: 288 FARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRY 341
           F  ++ D+         +  V  +PTF F + GQ  G + G+ K +L   I   
Sbjct: 65  FLEVDVDDCQDVAS---ECEVKSMPTFQFFKKGQKVGEFSGANKEKLEATINEL 115

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* Length = 116

 Score = 68.1 bits (167), Expect = 1e-14
 Identities = 34/100 (34%), Positives = 56/100 (56%), Gaps = 3/100 (3%)

Query: 120 RVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGD 179
            VK++ S   F EAL  A +KLVVV+F+A+    S  I PF   LS + ++V F+ V  D
Sbjct: 12  SVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVD 71

Query: 180 ESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
           + +   ++    ++K +P F F+K  +K+ E  G   ++L
Sbjct: 72  DCQ---DVASECEVKSMPTFQFFKKGQKVGEFSGANKEKL 108

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 Length = 113

 Score = 70.8 bits (174), Expect = 2e-15
 Identities = 30/112 (26%), Positives = 59/112 (52%), Gaps = 4/112 (3%)

Query: 230 HSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFA 289
              V+  H+ +  ++  +  K  QKLIV+D     C PC  + P   +L+++    V F 
Sbjct: 3   EGQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPN-VTFL 61

Query: 290 RMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRY 341
           +++ DE  +  +   + NV  +PTF+F++DG++  + VG+ K  L   + ++
Sbjct: 62  KVDVDELKAVAE---EWNVEAMPTFIFLKDGKLVDKTVGADKDGLPTLVAKH 110

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 Length = 113

 Score = 57.7 bits (140), Expect = 8e-11
 Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 5/102 (4%)

Query: 120 RVKKVHSIEEFDEALRLAKN--KLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVM 177
           +V   H+++ + E     K   KL+VV+F AS       I P   +L+++  +V F+ V 
Sbjct: 5   QVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVD 64

Query: 178 GDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
            DE +    + E   ++ +P F F K  + + +  G   D L
Sbjct: 65  VDELK---AVAEEWNVEAMPTFIFLKDGKLVDKTVGADKDGL 103

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 Length = 107

 Score = 68.5 bits (168), Expect = 8e-15
 Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 3/99 (3%)

Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180
           VK V S  +F   L  A ++L VV+F         +I P    +S +     F+ V   +
Sbjct: 3   VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQ 62

Query: 181 SEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
            +          I   P F F+++  +I + +G     L
Sbjct: 63  CQ---GTAATNNISATPTFQFFRNKVRIDQYQGADAVGL 98

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 Length = 107

 Score = 68.1 bits (167), Expect = 1e-14
 Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 6/110 (5%)

Query: 232 AVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARM 291
            V  + S  D +  +       +L V+   ++ CGPC+++ P    +S +     VF  +
Sbjct: 2   GVKPVGSDPDFQPELSGAG--SRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQ-AVFLEV 58

Query: 292 NGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRY 341
           +  +           N+   PTF F R+     +Y G+    L  +I ++
Sbjct: 59  DVHQCQGTAA---TNNISATPTFQFFRNKVRIDQYQGADAVGLEEKIKQH 105

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} Length = 112

 Score = 68.9 bits (169), Expect = 8e-15
 Identities = 26/113 (23%), Positives = 45/113 (39%), Gaps = 7/113 (6%)

Query: 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGT-VVFARM 291
           V++++ +E    L      D KLIVL        PC  +      +S + + + V F  +
Sbjct: 2   VIEINDQEQFTYLTTTAAGD-KLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSI 60

Query: 292 NGDEN-DSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQG 343
           + DEN +    F     +  VP F+ I  G I     G+   E +  +   + 
Sbjct: 61  DADENSEISELF----EISAVPYFIIIHKGTILKELSGADPKEYVSLLEDCKN 109

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} Length = 112

 Score = 49.3 bits (118), Expect = 6e-08
 Identities = 23/107 (21%), Positives = 44/107 (41%), Gaps = 16/107 (14%)

Query: 121 VKKVHSIEEFDEALR-LAKNKLVVVEFAAS-----RSLDSSKIYPFMVDLSRQCN--DVE 172
           V +++  E+F       A +KL+V+ F  S     +      +      +S + +  +V 
Sbjct: 2   VIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCK-----ALKQVFEAISNEPSNSNVS 56

Query: 173 FILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
           F+ +  DE+    E+ E  +I  VP+F        + E  G  P + 
Sbjct: 57  FLSIDADENS---EISELFEISAVPYFIIIHKGTILKELSGADPKEY 100

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A Length = 106

 Score = 68.4 bits (168), Expect = 1e-14
 Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 5/106 (4%)

Query: 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
           V Q+  K D++  +       KL+VLD     CGPC  + P +++LS Q A  VV  +++
Sbjct: 2   VYQVKDKADLDGQLTKAS--GKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVD 59

Query: 293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEI 338
            DE +       + N+  +PTF+F+++G     + G+    L   I
Sbjct: 60  VDECEDIAM---EYNISSMPTFVFLKNGVKVEEFAGANAKRLEDVI 102

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A Length = 106

 Score = 56.1 bits (136), Expect = 2e-10
 Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 14/105 (13%)

Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAAS-----RSLDSSKIYPFMVDLSRQ-CNDVEFI 174
           V +V    + D  L  A  KLVV++F A+     +      I P +V+LS Q  ++V  +
Sbjct: 2   VYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCK-----MISPKLVELSTQFADNVVVL 56

Query: 175 LVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
            V  DE E          I  +P F F K+  K+ E  G    +L
Sbjct: 57  KVDVDECEDIAMEYN---ISSMPTFVFLKNGVKVEEFAGANAKRL 98

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A Length = 114

 Score = 68.1 bits (167), Expect = 2e-14
 Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 10/120 (8%)

Query: 220 MGDVLYYGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLS 279
           MG   ++  S++++ +L +  +   LI  +      +V+D     CGPC  + P + KL 
Sbjct: 1   MGHHHHHHSSYTSITKLTNLTEFRNLIKQND----KLVIDFYATWCGPCKMMQPHLTKLI 56

Query: 280 RQMAGTVVFARMNGDEN-DSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEI 338
           +     V F + + DE+ D   +      V  +PTF+  +DGQ+ G+ +G+    L   I
Sbjct: 57  QAYPD-VRFVKCDVDESPDIAKEC----EVTAMPTFVLGKDGQLIGKIIGANPTALEKGI 111

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A Length = 114

 Score = 50.0 bits (120), Expect = 4e-08
 Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 15/105 (14%)

Query: 120 RVKKVHSIEEFDEALRLAKNKLVVVEFAAS-----RSLDSSKIYPFMVDLSRQCNDVEFI 174
            + K+ ++ EF   +   +N  +V++F A+     +      + P +  L +   DV F+
Sbjct: 13  SITKLTNLTEFRNLI--KQNDKLVIDFYATWCGPCKM-----MQPHLTKLIQAYPDVRFV 65

Query: 175 LVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
               DES    ++ +  ++  +P F   K  + I +  G  P  L
Sbjct: 66  KCDVDESP---DIAKECEVTAMPTFVLGKDGQLIGKIIGANPTAL 107

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... Length = 105

 Score = 67.7 bits (166), Expect = 2e-14
 Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 6/109 (5%)

Query: 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
           V Q+ SK   ++ +D      KL+V+D     CGPC  + P    LS + +  V+F  ++
Sbjct: 2   VKQIESKTAFQEALDAAG--DKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN-VIFLEVD 58

Query: 293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRY 341
            D+         +  V  +PTF F + GQ  G + G+ K +L   I   
Sbjct: 59  VDDCQDVAS---ESEVKSMPTFQFFKKGQKVGEFSGANKEKLEATINEL 104

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... Length = 105

 Score = 66.5 bits (163), Expect = 4e-14
 Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 3/99 (3%)

Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180
           VK++ S   F EAL  A +KLVVV+F+A+       I PF   LS + ++V F+ V  D+
Sbjct: 2   VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61

Query: 181 SEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
            +   ++    ++K +P F F+K  +K+ E  G   ++L
Sbjct: 62  CQ---DVASESEVKSMPTFQFFKKGQKVGEFSGANKEKL 97

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A Length = 153

 Score = 68.7 bits (168), Expect = 2e-14
 Identities = 23/116 (19%), Positives = 53/116 (45%), Gaps = 8/116 (6%)

Query: 229 SHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVF 288
           + +AV ++ S    E+L+      + L+V+         C ++   + +L++++   V F
Sbjct: 10  AVAAVEEVGSAGQFEELLRLKA--KSLLVVHFWAPWAPQCAQMNEVMAELAKELPQ-VSF 66

Query: 289 ARMNGDEN-DSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQG 343
            ++  +   +   ++     +  VPTFLF ++ Q   R  G+   EL  ++ R+  
Sbjct: 67  VKLEAEGVPEVSEKY----EISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHAS 118

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A Length = 153

 Score = 62.2 bits (151), Expect = 5e-12
 Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 3/123 (2%)

Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180
           V++V S  +F+E LRL    L+VV F A  +   +++   M +L+++   V F+ +  + 
Sbjct: 14  VEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEG 73

Query: 181 SEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQLMGDVLYYGDSHSAVVQLHSKE 240
                E+ E+ +I  VP F F+K+ +KI   +G    +L   V  +  S S +     K 
Sbjct: 74  VP---EVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHASSGSFLPSAKVKV 130

Query: 241 DVE 243
           D +
Sbjct: 131 DTD 133

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} Length = 104

 Score = 66.9 bits (164), Expect = 3e-14
 Identities = 36/111 (32%), Positives = 69/111 (62%), Gaps = 8/111 (7%)

Query: 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
           +  L +  D+EKLI+++K   +LIV+D   + CGPC  + P V  L++++   V FA+++
Sbjct: 1   MRVLATAADLEKLINENK--GRLIVVDFFAQWCGPCRNIAPKVEALAKEI-PEVEFAKVD 57

Query: 293 GDEN-DSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQ 342
            D+N ++  ++    +V  +PTF+FI+DG+   R+ G+ + +L   I R++
Sbjct: 58  VDQNEEAAAKY----SVTAMPTFVFIKDGKEVDRFSGANETKLRETITRHK 104

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} Length = 104

 Score = 58.0 bits (141), Expect = 4e-11
 Identities = 23/104 (22%), Positives = 48/104 (46%), Gaps = 13/104 (12%)

Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAAS-----RSLDSSKIYPFMVDLSRQCNDVEFIL 175
           ++ + +  + ++ +   K +L+VV+F A      R      I P +  L+++  +VEF  
Sbjct: 1   MRVLATAADLEKLINENKGRLIVVDFFAQWCGPCR-----NIAPKVEALAKEIPEVEFAK 55

Query: 176 VMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
           V  D++E   E   +  +  +P F F K  +++    G    +L
Sbjct: 56  VDVDQNE---EAAAKYSVTAMPTFVFIKDGKEVDRFSGANETKL 96

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A Length = 117

 Score = 67.0 bits (164), Expect = 5e-14
 Identities = 30/112 (26%), Positives = 61/112 (54%), Gaps = 9/112 (8%)

Query: 231 SAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFAR 290
           S +++L    D+E L++ HK   KL+V+D     CGPC  + P   +LS +     +F +
Sbjct: 13  SELIELKQDGDLESLLEQHK--NKLVVVDFFATWCGPCKTIAPLFKELSEKY--DAIFVK 68

Query: 291 MNGDEN-DSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRY 341
           ++ D+  ++  ++    N+  +PTF+ I++G+  G  VG+   ++   I ++
Sbjct: 69  VDVDKLEETARKY----NISAMPTFIAIKNGEKVGDVVGASIAKVEDMIKKF 116

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A Length = 117

 Score = 57.4 bits (139), Expect = 1e-10
 Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 14/105 (13%)

Query: 120 RVKKVHSIEEFDEALRLAKNKLVVVEFAAS-----RSLDSSKIYPFMVDLSRQCNDVEFI 174
            + ++    + +  L   KNKLVVV+F A+     ++     I P   +LS +  D  F+
Sbjct: 14  ELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKT-----IAPLFKELSEK-YDAIFV 67

Query: 175 LVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
            V  D+ E   E   +  I  +P F   K+ EK+ +  G    ++
Sbjct: 68  KVDVDKLE---ETARKYNISAMPTFIAIKNGEKVGDVVGASIAKV 109

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} Length = 105

 Score = 65.0 bits (159), Expect = 2e-13
 Identities = 17/113 (15%), Positives = 40/113 (35%), Gaps = 11/113 (9%)

Query: 232 AVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARM 291
            +    + E++   I++ +    L++L +  ++CG C  +   V  +       V    +
Sbjct: 1   GMNTFKTIEELATYIEEQQ----LVLLFIKTENCGVCDVMLRKVNYVLENYNY-VEKIEI 55

Query: 292 NGDEN-DSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS-GKGELIGEILRYQ 342
              +  +   ++     V   PT L   +G+   R         L   I  ++
Sbjct: 56  LLQDMQEIAGRY----AVFTGPTVLLFYNGKEILRESRFISLENLERTIQLFE 104

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} Length = 105

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 16/100 (16%), Positives = 37/100 (37%), Gaps = 6/100 (6%)

Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180
           +    +IEE      + + +LV++            +   +  +    N VE I ++  +
Sbjct: 2   MNTFKTIEELATY--IEEQQLVLLFIKTENCGVCDVMLRKVNYVLENYNYVEKIEILLQD 59

Query: 181 SEKTKELCEREKIKKVPHFSFYKSMEKIHEEEG-IGPDQL 219
            +   E+  R  +   P    + + ++I  E   I  + L
Sbjct: 60  MQ---EIAGRYAVFTGPTVLLFYNGKEILRESRFISLENL 96

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} PDB: 1xbs_A Length = 149

 Score = 65.8 bits (160), Expect = 2e-13
 Identities = 19/105 (18%), Positives = 44/105 (41%), Gaps = 5/105 (4%)

Query: 235 QLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGD 294
           +L SK++V++ I      +K++VL  G      C+++   + K S  ++       ++ D
Sbjct: 7   KLTSKKEVDQAIKS--TAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVD 64

Query: 295 ENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEIL 339
           +      + +  ++  +P+ +F  +GQ      GS          
Sbjct: 65  QT---AVYTQYFDISYIPSTVFFFNGQHMKVDYGSPDHTKFVGSF 106

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} PDB: 1xbs_A Length = 149

 Score = 48.8 bits (116), Expect = 2e-07
 Identities = 15/98 (15%), Positives = 41/98 (41%), Gaps = 2/98 (2%)

Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180
           + K+ S +E D+A++    K++V+ F         ++   +   S   + +  I ++  +
Sbjct: 5   LPKLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLV--D 62

Query: 181 SEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQ 218
            ++T    +   I  +P   F+ + + +  + G     
Sbjct: 63  VDQTAVYTQYFDISYIPSTVFFFNGQHMKVDYGSPDHT 100

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 Length = 112

 Score = 64.3 bits (157), Expect = 3e-13
 Identities = 25/116 (21%), Positives = 53/116 (45%), Gaps = 10/116 (8%)

Query: 229 SHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVF 288
            H  V  + S+ + + +I  ++    L+++D   + CGPC ++ P   + S+     +VF
Sbjct: 6   HHHMVKIVTSQAEFDSIISQNE----LVIVDFFAEWCGPCKRIAPFYEECSKTYTK-MVF 60

Query: 289 ARMNGDEN-DSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQG 343
            +++ DE  +   +     N+  +PTF   ++G      +G+    L   I +Y  
Sbjct: 61  IKVDVDEVSEVTEKE----NITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYAA 112

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 Length = 112

 Score = 54.6 bits (132), Expect = 1e-09
 Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 15/104 (14%)

Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAAS-----RSLDSSKIYPFMVDLSRQCNDVEFIL 175
           VK V S  EFD  +  ++N+LV+V+F A      +      I PF  + S+    + FI 
Sbjct: 10  VKIVTSQAEFDSII--SQNELVIVDFFAEWCGPCKR-----IAPFYEECSKTYTKMVFIK 62

Query: 176 VMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
           V  DE     E+ E+E I  +P F  YK+   +    G     L
Sbjct: 63  VDVDEVS---EVTEKENITSMPTFKVYKNGSSVDTLLGANDSAL 103

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 Length = 125

 Score = 64.0 bits (156), Expect = 6e-13
 Identities = 26/111 (23%), Positives = 53/111 (47%), Gaps = 10/111 (9%)

Query: 229 SHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVF 288
            + +VV ++S E    ++ +      L V       CGPC  +   + K++ +    V F
Sbjct: 17  RYPSVVDVYSVEQFRNIMSEDI----LTVAWFTAVWCGPCKTIERPMEKIAYEFPT-VKF 71

Query: 289 ARMNGDEN-DSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEI 338
           A+++ D N +   +      V+++PTF+  R G++ G  +G+  G L  ++
Sbjct: 72  AKVDADNNSEIVSKC----RVLQLPTFIIARSGKMLGHVIGANPGMLRQKL 118

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 Length = 125

 Score = 50.9 bits (122), Expect = 3e-08
 Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 15/118 (12%)

Query: 107 TAAPGTKNAPRDERVKKVHSIEEFDEALRLAKNKLVVVEFAAS-----RSLDSSKIYPFM 161
               G +   R   V  V+S+E+F   +  +++ L V  F A      ++     I   M
Sbjct: 7   HHHHGIRMRARYPSVVDVYSVEQFRNIM--SEDILTVAWFTAVWCGPCKT-----IERPM 59

Query: 162 VDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
             ++ +   V+F  V  D +    E+  + ++ ++P F   +S + +    G  P  L
Sbjct: 60  EKIAYEFPTVKFAKVDADNNS---EIVSKCRVLQLPTFIIARSGKMLGHVIGANPGML 114

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B Length = 109

 Score = 63.5 bits (155), Expect = 6e-13
 Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 10/117 (8%)

Query: 226 YGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGT 285
           +   H  V Q  +  + +  I   K    L+V+D     CGPC  + P + K S Q    
Sbjct: 1   HHHHHHMVTQFKTASEFDSAIAQDK----LVVVDFYATWCGPCKMIAPMIEKFSEQYPQ- 55

Query: 286 VVFARMNGDEN-DSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRY 341
             F +++ DE  D   +      V  +PT L  ++G+   + VG+    +   I   
Sbjct: 56  ADFYKLDVDELGDVAQKN----EVSAMPTLLLFKNGKEVAKVVGANPAAIKQAIAAN 108

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B Length = 109

 Score = 49.2 bits (118), Expect = 7e-08
 Identities = 24/104 (23%), Positives = 49/104 (47%), Gaps = 15/104 (14%)

Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAAS-----RSLDSSKIYPFMVDLSRQCNDVEFIL 175
           V +  +  EFD A+  A++KLVVV+F A+     +      I P +   S Q    +F  
Sbjct: 8   VTQFKTASEFDSAI--AQDKLVVVDFYATWCGPCKM-----IAPMIEKFSEQYPQADFYK 60

Query: 176 VMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
           +  DE     ++ ++ ++  +P    +K+ +++ +  G  P  +
Sbjct: 61  LDVDELG---DVAQKNEVSAMPTLLLFKNGKEVAKVVGANPAAI 101

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} Length = 133

 Score = 61.3 bits (149), Expect = 6e-12
 Identities = 20/121 (16%), Positives = 40/121 (33%), Gaps = 11/121 (9%)

Query: 225 YYGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG 284
            Y    S  ++L +   + ++    +     IV+  G   C PC K+             
Sbjct: 14  LYFQGQSIYIELKNTGSLNQVFSSTQ--NSSIVIKFGAVWCKPCNKIKEYFKNQLNY--Y 69

Query: 285 TVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYV----GSGKGELIGEILR 340
            V    ++ D +          N+  +PTF F  +       V    G+ + ++     +
Sbjct: 70  YVTLVDIDVDIHPKLND---QHNIKALPTFEFYFNLNNEWVLVHTVEGANQNDIEKAFQK 126

Query: 341 Y 341
           Y
Sbjct: 127 Y 127

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} Length = 133

 Score = 59.0 bits (143), Expect = 5e-11
 Identities = 18/108 (16%), Positives = 40/108 (37%), Gaps = 18/108 (16%)

Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAAS-----RSLDSSKIYPFMVDLSRQCNDVEFIL 175
             ++ +    ++     +N  +V++F A            KI  +  +       V  + 
Sbjct: 22  YIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCN-----KIKEYFKNQLNY-YYVTLVD 75

Query: 176 VMGDESEKTKELCEREKIKKVPHFSFYKSMEK----IHEEEGIGPDQL 219
           +  D      +L ++  IK +P F FY ++      +H  EG   + +
Sbjct: 76  IDVDIHP---KLNDQHNIKALPTFEFYFNLNNEWVLVHTVEGANQNDI 120

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} Length = 121

 Score = 60.5 bits (147), Expect = 1e-11
 Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 10/117 (8%)

Query: 229 SHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGT-VV 287
              +V  + S +  +++    K    ++V+D     CGPC  + P   K+S   AG  V 
Sbjct: 13  PRGSVQVISSYDQFKQVTGGDK----VVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVG 68

Query: 288 FARMNGDEN-DSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQG 343
           F +++ DE      +      +  +PTF+F ++GQ     VG+   +L   I ++  
Sbjct: 69  FYKVDVDEQSQIAQEV----GIRAMPTFVFFKNGQKIDTVVGADPSKLQAAITQHSA 121

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} Length = 121

 Score = 41.2 bits (97), Expect = 5e-05
 Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 17/106 (16%)

Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAAS-----RSLDSSKIYPFMVDLSRQ--CNDVEF 173
           V+ + S ++F +      +K+VV++F A+     +      I P    +S     + V F
Sbjct: 17  VQVISSYDQFKQVT--GGDKVVVIDFWATWCGPCK-----MIGPVFEKISDTPAGDKVGF 69

Query: 174 ILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
             V  DE  +  +      I+ +P F F+K+ +KI    G  P +L
Sbjct: 70  YKVDVDEQSQIAQEVG---IRAMPTFVFFKNGQKIDTVVGADPSKL 112

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A Length = 111

 Score = 56.2 bits (136), Expect = 2e-10
 Identities = 22/108 (20%), Positives = 51/108 (47%), Gaps = 6/108 (5%)

Query: 231 SAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFAR 290
             V ++ +K+    ++       K +VLD+  + CGP   + P   KL+ +    V+F +
Sbjct: 5   GKVTEV-NKDTFWPIVKAAG--DKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLD-VIFLK 60

Query: 291 MNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEI 338
           ++ ++        +++ +  VPTF  +++  + G   G+   +L+  I
Sbjct: 61  LDCNQE--NKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAI 106

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A Length = 111

 Score = 46.5 bits (111), Expect = 6e-07
 Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 13/105 (12%)

Query: 120 RVKKVHSIEEFDEALRLAKNKLVVVEFAAS-----RSLDSSKIYPFMVDLSRQCNDVEFI 174
           +V +V+  + F   ++ A +K VV++         +      + P    L+ +  DV F+
Sbjct: 6   KVTEVNK-DTFWPIVKAAGDKPVVLDMFTQWCGPSK-----AMAPKYEKLAEEYLDVIFL 59

Query: 175 LVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
            +  D +++ K L +   I+ VP F   K    + E  G   D+L
Sbjct: 60  KL--DCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKL 102

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 59.8 bits (144), Expect = 5e-10
 Identities = 31/201 (15%), Positives = 70/201 (34%), Gaps = 18/201 (8%)

Query: 128 EEFDE-ALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTK 185
             F+E   +   +++ +V+F +  S  S  + P    ++R     +    V   +  +  
Sbjct: 551 STFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGLINVGSV---DCGQYH 607

Query: 186 ELCEREKIKKVPHFSFYK--SMEKIHEEEGIGPDQLMGDVLYYGDSH--SAVVQLHSKED 241
             C +E +++ P   FY   S +        G ++    +  +G      A + L + + 
Sbjct: 608 SFCTQENVQRYPEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGLGFLPQASIDL-TPQT 666

Query: 242 VEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDS-CM 300
             + +   K      V+D      GP     P    L+R + G V   +++       C 
Sbjct: 667 FNEKVLQGK---THWVVDFYAPWSGPSQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQ 723

Query: 301 QFLRDMNVVEVPTFLFIRDGQ 321
           +      +   P+    +  +
Sbjct: 724 KA----GIKAYPSVKLYQYER 740

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 49.0 bits (116), Expect = 2e-06
 Identities = 25/211 (11%), Positives = 57/211 (27%), Gaps = 17/211 (8%)

Query: 115 APRDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFI 174
               E +  +   E         +              + +   P +  L     +    
Sbjct: 325 EIYMEIIHNLPDFELLSANQLEDRLAHHRWLVFFHFGKNENANDPELKKLKTLLKNEHIQ 384

Query: 175 LVMGDESEKTKELCEREKIKK--VPHFSFYKSMEKIHEEEGIGPDQLMGDVLYYGDSHSA 232
           +V  D       +C    + +  +  F    + E            ++       +SH  
Sbjct: 385 VVRFD-CSSAPGICSDLYVFQPSLAVFKGQGTKEYEIHHGKKILYDILAFAKESVNSH-- 441

Query: 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
           V  L  +            D++  ++D       P   + P + K S  + G +    ++
Sbjct: 442 VTTLGPQNFPAS-------DKEPWLVDFFAPWSPPSRALLPELRKASTLLYGQLKVGTLD 494

Query: 293 GDENDS-CMQFLRDMNVVEVPTFLFIRDGQI 322
              ++  C  +    N+   PT +      I
Sbjct: 495 CTIHEGLCNMY----NIQAYPTTVVFNQSSI 521

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 42.8 bits (100), Expect = 1e-04
 Identities = 17/152 (11%), Positives = 44/152 (28%), Gaps = 13/152 (8%)

Query: 182 EKTKELCEREKIKKVP----HFSFYKSMEKIHEEEGIGPDQLMGDVLYYGDSHSAVVQLH 237
               ++    ++ K       +  Y        + G           +        +   
Sbjct: 62  GDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITL 121

Query: 238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN-GDEN 296
            + + +  ++  +    L  ++           + PT  + ++++ G +    +N GD+ 
Sbjct: 122 ERREFDAAVNSGE----LWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVNCGDDR 177

Query: 297 DSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVG 328
             C        V   P+    R G    +Y G
Sbjct: 178 MLCRMK----GVNSYPSLFIFRSGMAAVKYNG 205

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 Length = 124

 Score = 55.5 bits (134), Expect = 5e-10
 Identities = 23/111 (20%), Positives = 52/111 (46%), Gaps = 6/111 (5%)

Query: 231 SAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFAR 290
             V ++ +K+    ++       K +VLD+  + CGPC  + P   KL+ +    V+F +
Sbjct: 18  GKVTEV-NKDTFWPIVKAAG--DKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD-VIFLK 73

Query: 291 MNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRY 341
           ++ ++        +++ +  VPTF  +++  + G   G+   +L+  I   
Sbjct: 74  LDCNQE--NKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAIQAA 122

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 Length = 124

 Score = 45.9 bits (109), Expect = 1e-06
 Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 13/104 (12%)

Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAAS-----RSLDSSKIYPFMVDLSRQCNDVEFIL 175
           V +V+  + F   ++ A +K VV++         +      + P    L+ +  DV F+ 
Sbjct: 20  VTEVNK-DTFWPIVKAAGDKPVVLDMFTQWCGPCK-----AMAPKYEKLAEEYLDVIFLK 73

Query: 176 VMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
           +  +  ++ K L +   I+ VP F   K    + E  G   D+L
Sbjct: 74  LDCN--QENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKL 115

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C Length = 245

 Score = 57.0 bits (137), Expect = 1e-09
 Identities = 20/109 (18%), Positives = 44/109 (40%), Gaps = 6/109 (5%)

Query: 220 MGDVLYYGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLS 279
           M   L +G  +  V +L S E   + I+  +     IV+ +       C  +  ++I L+
Sbjct: 101 MHQKLSFGPRYGFVYELESGEQFLETIEKEQKI-TTIVVHIYEDGIKGCDALNSSLICLA 159

Query: 280 RQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVG 328
            +    V F ++      +  +F    +   +PT L  + G++   ++ 
Sbjct: 160 AEY-PMVKFCKIKASNTGAGDRF----SSDVLPTLLVYKGGELLSNFIS 203

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C Length = 245

 Score = 52.0 bits (124), Expect = 6e-08
 Identities = 22/141 (15%), Positives = 46/141 (32%), Gaps = 20/141 (14%)

Query: 112 TKNAPRDERVKKVHSIEEFDEALRLA-KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND 170
               PR   V ++ S E+F E +    K   +VV            +   ++ L+ +   
Sbjct: 105 LSFGPRYGFVYELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYPM 164

Query: 171 VEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQLMGDVLYYGDSH 230
           V+F  +    +       +R     +P    YK  E +     I   + + +        
Sbjct: 165 VKFCKIKASNT----GAGDRFSSDVLPTLLVYKGGELLSNF--ISVTEQLAEEF------ 212

Query: 231 SAVVQLHSKEDVEKLIDDHKV 251
                     DVE  ++++ +
Sbjct: 213 -------FTGDVESFLNEYGL 226

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score = 56.8 bits (137), Expect = 1e-09
 Identities = 34/217 (15%), Positives = 79/217 (36%), Gaps = 22/217 (10%)

Query: 115 APRDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFI 174
              +  V  ++    FD  +  A    V++EF A       +  P    ++    D +  
Sbjct: 11  VKEENGVLVLND-ANFDNFV--ADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPP 67

Query: 175 LVMGD-ESEKTKELCEREKIKKVPHFSFYKSMEKI-----HEEEGIGPDQLMGDVLYYGD 228
           + +   ++     L  R  +   P     K  + +       +E I   ++         
Sbjct: 68  IPVAKIDATSASVLASRFDVSGYPTIKILKKGQAVDYEGSRTQEEI-VAKVREVSQPDWT 126

Query: 229 SHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG---T 285
               V  + +KE+ +++++D  +    I+++     CG C K+ P   K +++++     
Sbjct: 127 PPPEVTLVLTKENFDEVVNDADI----ILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPP 182

Query: 286 VVFARMNGDENDS-CMQFLRDMNVVEVPTFLFIRDGQ 321
           +  A+++         +F    +V   PT    R G+
Sbjct: 183 IPLAKVDATAETDLAKRF----DVSGYPTLKIFRKGR 215

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score = 39.8 bits (93), Expect = 6e-04
 Identities = 19/123 (15%), Positives = 40/123 (32%), Gaps = 3/123 (2%)

Query: 98  RTQLLITKATAAPGTKNAPRDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKI 157
           RTQ  I          +      V  V + E FDE +      +++VEF A       K+
Sbjct: 108 RTQEEIVAKVREVSQPDWTPPPEVTLVLTKENFDEVV--NDADIILVEFYAPWCGHCKKL 165

Query: 158 YPFMVDLSRQCNDVEFILVMGD-ESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGP 216
            P     +++ +     + +   ++    +L +R  +   P    ++             
Sbjct: 166 APEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKIFRKGRPYDYNGPREK 225

Query: 217 DQL 219
             +
Sbjct: 226 YGI 228

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} Length = 155

 Score = 54.8 bits (132), Expect = 2e-09
 Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 6/76 (7%)

Query: 265 CGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN-DSCMQFLRDMNVVEVPTFLFIRDGQIR 323
           CGPC ++ P     +  +AG V  A+++   +     +      +  +P F+    G+  
Sbjct: 76  CGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPAVAGRH----RIQGIPAFILFHKGREL 131

Query: 324 GRYVGS-GKGELIGEI 338
            R  G+    EL+G +
Sbjct: 132 ARAAGARPASELVGFV 147

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} Length = 111

 Score = 53.1 bits (128), Expect = 3e-09
 Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 6/76 (7%)

Query: 265 CGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN-DSCMQFLRDMNVVEVPTFLFIRDGQIR 323
           C  C KV P + +L      +  F  ++ +E      +F    ++  VP  L+ +DG+ +
Sbjct: 34  CHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKTLFQRF----SLKGVPQILYFKDGEYK 89

Query: 324 GRYVGS-GKGELIGEI 338
           G+  G     E+   I
Sbjct: 90  GKMAGDVEDDEVEQMI 105

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A Length = 142

 Score = 53.7 bits (129), Expect = 4e-09
 Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 7/77 (9%)

Query: 265 CGPCVKVYPTVIKLSRQMAGT-VVFARMNGDEN-DSCMQFLRDMNVVEVPTFLFIRDGQI 322
                     + +L R+        A  + +++     +F    NV   P  L   DG++
Sbjct: 48  TPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRF----NVRRFPATLVFTDGKL 103

Query: 323 RGRYVG-SGKGELIGEI 338
           RG   G     EL+  +
Sbjct: 104 RGALSGIHPWAELLTLM 120

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} Length = 148

 Score = 53.6 bits (129), Expect = 4e-09
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 6/76 (7%)

Query: 265 CGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN-DSCMQFLRDMNVVEVPTFLFIRDGQIR 323
           CGPC    P   + + + AG V F ++N +       +F     +  +PT +  R+G++ 
Sbjct: 67  CGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPALSTRF----RIRSIPTIMLYRNGKMI 122

Query: 324 GRYVGS-GKGELIGEI 338
               G+  K      +
Sbjct: 123 DMLNGAVPKAPFDNWL 138

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A Length = 226

 Score = 55.1 bits (132), Expect = 5e-09
 Identities = 32/213 (15%), Positives = 72/213 (33%), Gaps = 13/213 (6%)

Query: 135 RLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIK 194
           ++     ++V           ++   + +LS   + + + +V  D  E  KEL +R +I 
Sbjct: 19  KMVNPVKLIVFVRKDHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEG-KELAKRYRID 77

Query: 195 KVPHFSFYKSMEKIHEEEGIGPDQLMGDVLYYGDSHSAVVQLHSKEDVEKLIDDHKVDQK 254
           + P  +  +  +         P                V +  +    E       +DQ 
Sbjct: 78  RAPATTITQDGKDFGVRYFGLPAGHEFAAFLED--IVDVSREETNLMDETKQAIRNIDQD 135

Query: 255 LIVLDVGLKHCGPCVKVYPTVIKLS----RQMAGTVVFARMNGDEN-DSCMQFLRDMNVV 309
           + +L      C  C        K +    +   G ++   +   E  +   Q+    NV+
Sbjct: 136 VRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQY----NVM 191

Query: 310 EVPTFLFIRDGQIRGRYVGSG-KGELIGEILRY 341
            VP  +   +G+ R  + G+  +   + ++L  
Sbjct: 192 AVPKIVIQVNGEDRVEFEGAYPEKMFLEKLLSA 224

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Length = 287

 Score = 55.6 bits (134), Expect = 5e-09
 Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 5/88 (5%)

Query: 253 QKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN-DSCMQFLRDMNVVEV 311
              ++     +    C+++ P +  L+ Q  G  + A+++ D       QF     +  +
Sbjct: 26  TTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQMIAAQF----GLRAI 81

Query: 312 PTFLFIRDGQIRGRYVGSGKGELIGEIL 339
           PT    ++GQ    + G    E I  +L
Sbjct: 82  PTVYLFQNGQPVDGFQGPQPEEAIRALL 109

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} Length = 140

 Score = 53.2 bits (128), Expect = 6e-09
 Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 6/76 (7%)

Query: 265 CGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN-DSCMQFLRDMNVVEVPTFLFIRDGQIR 323
           C  C  + P   + +++   + VF R+N   N  +  ++     V   PTF F   G+  
Sbjct: 36  CPYCKAMEPYFEEYAKEYGSSAVFGRINIATNPWTAEKY----GVQGTPTFKFFCHGRPV 91

Query: 324 GRYVGS-GKGELIGEI 338
              VG      L   +
Sbjct: 92  WEQVGQIYPSILKNAV 107

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A Length = 119

 Score = 52.3 bits (126), Expect = 6e-09
 Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 6/76 (7%)

Query: 265 CGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN-DSCMQFLRDMNVVEVPTFLFIRDGQIR 323
           CGPC  + P + K+  +  G VV A+++ D++ D  +++     V  VPT L +++G + 
Sbjct: 43  CGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEY----EVSAVPTVLAMKNGDVV 98

Query: 324 GRYVGS-GKGELIGEI 338
            ++VG   + +L   +
Sbjct: 99  DKFVGIKDEDQLEAFL 114

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 Length = 118

 Score = 52.3 bits (125), Expect = 7e-09
 Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 5/103 (4%)

Query: 238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND 297
           +    ++ +D  +         +G K C  C K   T+  +  +    + F         
Sbjct: 18  TVVRAQEALDKKET----ATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQL 73

Query: 298 SCMQ-FLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEIL 339
           + +Q F     +  VP F+ I DGQI  R   S   + I +  
Sbjct: 74  NDLQAFRSRYGIPTVPGFVHITDGQINVRCDSSMSAQEIKDFA 116

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} Length = 109

 Score = 52.0 bits (125), Expect = 8e-09
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 6/76 (7%)

Query: 265 CGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN-DSCMQFLRDMNVVEVPTFLFIRDGQIR 323
           C PC    P   K++ +  G  VF R+N DEN     ++    +V+ +PT L   +GQ+ 
Sbjct: 33  CAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQKIADKY----SVLNIPTTLIFVNGQLV 88

Query: 324 GRYVGS-GKGELIGEI 338
              VG+  +  L   +
Sbjct: 89  DSLVGAVDEDTLESTV 104

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} Length = 140

 Score = 52.8 bits (127), Expect = 8e-09
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 6/76 (7%)

Query: 265 CGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN-DSCMQFLRDMNVVEVPTFLFIRDGQIR 323
           CGPC  V P + +L+R  AG +   ++N DE+     ++     V  VPT +  R G   
Sbjct: 62  CGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLAARY----GVRSVPTLVLFRRGAPV 117

Query: 324 GRYVGS-GKGELIGEI 338
             +VG+  +  L   +
Sbjct: 118 ATWVGASPRRVLEERL 133

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A Length = 121

 Score = 52.0 bits (125), Expect = 8e-09
 Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 6/76 (7%)

Query: 265 CGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN-DSCMQFLRDMNVVEVPTFLFIRDGQIR 323
           CGPC  V P + +++ + A  +  A+++ D N ++   F     VV +PT +  +DGQ  
Sbjct: 42  CGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNF----QVVSIPTLILFKDGQPV 97

Query: 324 GRYVGS-GKGELIGEI 338
            R VG+ GK  L+ E+
Sbjct: 98  KRIVGAKGKAALLREL 113

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} Length = 118

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 20/112 (17%), Positives = 50/112 (44%), Gaps = 10/112 (8%)

Query: 236 LHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDE 295
           +H     E L++  K    L+++D     CGPC ++   +  ++      V F +++ D+
Sbjct: 6   VHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEAN-KDVTFIKVDVDK 64

Query: 296 N-DSCMQFLRDMNVVEVPTFLFIRDG----QIRGRYVGSGKGELIGEILRYQ 342
           N ++   +     V  +P   F++      +   ++VG+    +  +I +++
Sbjct: 65  NGNAADAY----GVSSIPALFFVKKEGNEIKTLDQFVGADVSRIKADIEKFK 112

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti} Length = 107

 Score = 51.5 bits (124), Expect = 1e-08
 Identities = 22/76 (28%), Positives = 43/76 (56%), Gaps = 6/76 (7%)

Query: 265 CGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN-DSCMQFLRDMNVVEVPTFLFIRDGQIR 323
           CGPC  + P + ++ ++ AG V  A++N D+N ++   +     V  +PT + +RDG++ 
Sbjct: 32  CGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPETPNAY----QVRSIPTLMLVRDGKVI 87

Query: 324 GRYVGS-GKGELIGEI 338
            + VG+  K +L   +
Sbjct: 88  DKKVGALPKSQLKAWV 103

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A Length = 109

 Score = 51.5 bits (124), Expect = 1e-08
 Identities = 20/76 (26%), Positives = 41/76 (53%), Gaps = 6/76 (7%)

Query: 265 CGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN-DSCMQFLRDMNVVEVPTFLFIRDGQIR 323
           C PC  + P + +++++  G ++ A+++ DEN  + M++     V+ +PT +  +DGQ  
Sbjct: 30  CAPCRMIAPILEEIAKEYEGKLLVAKLDVDENPKTAMRY----RVMSIPTVILFKDGQPV 85

Query: 324 GRYVGS-GKGELIGEI 338
              VG+  K     +I
Sbjct: 86  EVLVGAQPKRNYQAKI 101

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} PDB: 2o7k_A 2o85_A 2o89_A 2o87_A Length = 106

 Score = 51.2 bits (123), Expect = 1e-08
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 6/76 (7%)

Query: 265 CGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN-DSCMQFLRDMNVVEVPTFLFIRDGQIR 323
           CGPC  + P + +L+    G     +++ DEN  +  ++     V+ +PT +  +DGQ  
Sbjct: 31  CGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKY----EVMSIPTLIVFKDGQPV 86

Query: 324 GRYVGS-GKGELIGEI 338
            + VG   K  L   +
Sbjct: 87  DKVVGFQPKENLAEVL 102

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor} Length = 112

 Score = 51.6 bits (124), Expect = 1e-08
 Identities = 16/76 (21%), Positives = 39/76 (51%), Gaps = 6/76 (7%)

Query: 265 CGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN-DSCMQFLRDMNVVEVPTFLFIRDGQIR 323
           CGPC ++ P++  ++ +    +   ++N DEN  +  ++     V+ +PT    + G++ 
Sbjct: 35  CGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKY----GVMSIPTLNVYQGGEVA 90

Query: 324 GRYVGS-GKGELIGEI 338
              VG+  K  ++ ++
Sbjct: 91  KTIVGAKPKAAIVRDL 106

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A Length = 105

 Score = 51.1 bits (123), Expect = 1e-08
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 6/76 (7%)

Query: 265 CGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN-DSCMQFLRDMNVVEVPTFLFIRDGQIR 323
           CGPC  + P + + +   A  V  A++N DEN ++  QF     ++ +PT +  + G+  
Sbjct: 29  CGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQF----GIMSIPTLILFKGGRPV 84

Query: 324 GRYVGS-GKGELIGEI 338
            + +G   K +L  ++
Sbjct: 85  KQLIGYQPKEQLEAQL 100

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C Length = 105

 Score = 51.1 bits (123), Expect = 1e-08
 Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 6/76 (7%)

Query: 265 CGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN-DSCMQFLRDMNVVEVPTFLFIRDGQIR 323
           CGPC  + P + +L+++ +G +   ++N DE      Q+    N+  +PT LF ++G+ +
Sbjct: 30  CGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQY----NIRSIPTVLFFKNGERK 85

Query: 324 GRYVGS-GKGELIGEI 338
              +G+  K  L   I
Sbjct: 86  ESIIGAVPKSTLTDSI 101

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A Length = 110

 Score = 51.2 bits (123), Expect = 1e-08
 Identities = 15/99 (15%), Positives = 35/99 (35%), Gaps = 11/99 (11%)

Query: 231 SAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFAR 290
           SA+  + ++  +              ++      C  C  +   + K   +    V  + 
Sbjct: 2   SAIRDITTEAGMAHFEGL-----SDAIVFFHKNLCPHCKNMEKVLDKFGARAPQ-VAISS 55

Query: 291 MNGDEN-DSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVG 328
           ++ +   +   +         VPT +FIRDG++   + G
Sbjct: 56  VDSEARPELMKEL----GFERVPTLVFIRDGKVAKVFSG 90

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum} Length = 128

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 14/79 (17%), Positives = 32/79 (40%), Gaps = 6/79 (7%)

Query: 265 CGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN-DSCMQFLRDMNVVEVPTFLFIRDGQIR 323
           C  C      + KL +     +   +++ D+N     +F    +V  +PT + +++  + 
Sbjct: 54  CQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNESLARKF----SVKSLPTIILLKNKTML 109

Query: 324 GRYVGS-GKGELIGEILRY 341
            R        +LI  I ++
Sbjct: 110 ARKDHFVSSNDLIALIKKH 128

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct} Length = 106

 Score = 50.7 bits (122), Expect = 2e-08
 Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 6/76 (7%)

Query: 265 CGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN-DSCMQFLRDMNVVEVPTFLFIRDGQIR 323
           CGPC  + P + +L+++  G V   ++N DEN ++  Q+     +  +PT L  ++GQ+ 
Sbjct: 31  CGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNTAAQY----GIRSIPTLLLFKNGQVV 86

Query: 324 GRYVGS-GKGELIGEI 338
            R VG+  K  L   I
Sbjct: 87  DRLVGAQPKEALKERI 102

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1 Length = 107

 Score = 50.3 bits (121), Expect = 2e-08
 Identities = 14/76 (18%), Positives = 36/76 (47%), Gaps = 6/76 (7%)

Query: 265 CGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN-DSCMQFLRDMNVVEVPTFLFIRDGQIR 323
           CGPC  + P V +++ +    +   ++N DE+ +   ++     +  +PT +  + G+  
Sbjct: 31  CGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEY----GIRSIPTIMVFKGGKKC 86

Query: 324 GRYVGS-GKGELIGEI 338
              +G+  K  ++  +
Sbjct: 87  ETIIGAVPKATIVQTV 102

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A Length = 141

 Score = 51.0 bits (122), Expect = 3e-08
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 6/76 (7%)

Query: 265 CGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN-DSCMQFLRDMNVVEVPTFLFIRDGQIR 323
           CGPC  V P + +LS++ AG +   ++N D+  +    F     +  +PT  F+      
Sbjct: 63  CGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDF----GIQSIPTIWFVPMKGEP 118

Query: 324 GRYVGS-GKGELIGEI 338
              +G+  K +L G I
Sbjct: 119 QVNMGALSKEQLKGYI 134

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} Length = 122

 Score = 50.4 bits (121), Expect = 3e-08
 Identities = 11/69 (15%), Positives = 23/69 (33%), Gaps = 5/69 (7%)

Query: 265 CGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN-DSCMQFLRDMNVVEVPTFLFIRDGQIR 323
           CGPC    P    L+R + G V   +++      +C +      +   P+    +  + +
Sbjct: 33  CGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKA----GIKAYPSVKLYQYERAK 88

Query: 324 GRYVGSGKG 332
                    
Sbjct: 89  KSIWEEQIN 97

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A Length = 112

 Score = 50.0 bits (120), Expect = 3e-08
 Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 6/76 (7%)

Query: 265 CGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN-DSCMQFLRDMNVVEVPTFLFIRDGQIR 323
           CGP   + P + +L ++M   +   +++ DEN ++  ++     V+ +PT L ++DG++ 
Sbjct: 29  CGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKY----GVMSIPTLLVLKDGEVV 84

Query: 324 GRYVGS-GKGELIGEI 338
              VG   K  L   +
Sbjct: 85  ETSVGFKPKEALQELV 100

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1 Length = 115

 Score = 50.0 bits (120), Expect = 4e-08
 Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 6/76 (7%)

Query: 265 CGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN-DSCMQFLRDMNVVEVPTFLFIRDGQIR 323
           CGPC  + P +   +   +  +   ++  D N  +  ++     V  VP    ++  QI 
Sbjct: 37  CGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKY----KVEGVPALRLVKGEQIL 92

Query: 324 GRYVGS-GKGELIGEI 338
               G   K +L+  +
Sbjct: 93  DSTEGVISKDKLLSFL 108

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} Length = 128

 Score = 50.5 bits (121), Expect = 4e-08
 Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 4/75 (5%)

Query: 265 CGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRG 324
           CGP   + P + +++ +  G +  A++N D+N           +  +PT L  ++G++  
Sbjct: 52  CGPAKMIAPILDEIADEYQGKLTVAKLNIDQNP---GTAPKYGIRGIPTLLLFKNGEVAA 108

Query: 325 RYVGS-GKGELIGEI 338
             VG+  KG+L   +
Sbjct: 109 TKVGALSKGQLKEFL 123

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ... Length = 108

 Score = 49.6 bits (119), Expect = 4e-08
 Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 4/75 (5%)

Query: 265 CGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRG 324
           CGPC  + P + +++ +  G +  A++N D+N           +  +PT L  ++G++  
Sbjct: 32  CGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP---GTAPKYGIRGIPTLLLFKNGEVAA 88

Query: 325 RYVGS-GKGELIGEI 338
             VG+  KG+L   +
Sbjct: 89  TKVGALSKGQLKEFL 103

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} Length = 136

 Score = 50.1 bits (120), Expect = 5e-08
 Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 6/76 (7%)

Query: 265 CGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN-DSCMQFLRDMNVVEVPTFLFIRDGQIR 323
           CGPC  V P + +L+++  G +V  +++ ++  +    F     +  +P+ LFI      
Sbjct: 50  CGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELAGAF----GIRSIPSILFIPMEGKP 105

Query: 324 GRYVGS-GKGELIGEI 338
               G+  K      I
Sbjct: 106 EMAQGAMPKASFKKAI 121

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} Length = 130

 Score = 49.8 bits (119), Expect = 6e-08
 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 6/106 (5%)

Query: 238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIK---LSRQMAGTVVFARMNGD 294
            +    + +   +V+ KL+ +D     CGPC ++   V K   ++       V  +M+ +
Sbjct: 12  RELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDME 71

Query: 295 ENDSCMQFLRDMNVVEVPTFLFIR-DGQIRGRYVG-SGKGELIGEI 338
           + +  ++  +   V   PT LFI   G++  R VG     EL+ ++
Sbjct: 72  KGEG-VELRKKYGVHAYPTLLFINSSGEVVYRLVGAEDAPELLKKV 116

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6 Length = 217

 Score = 50.4 bits (120), Expect = 2e-07
 Identities = 18/109 (16%), Positives = 44/109 (40%), Gaps = 6/109 (5%)

Query: 220 MGDVLYYGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLS 279
           M   L +G  +  V +L + E   + I+  +     IV+++       C  +  ++  L+
Sbjct: 88  MHQKLSFGPRYGFVYELETGEQFLETIEKEQKV-TTIVVNIYEDGVRGCDALNSSLECLA 146

Query: 280 RQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVG 328
            +    V F ++      +  +F    +   +PT L  + G++   ++ 
Sbjct: 147 AEY-PMVKFCKIRASNTGAGDRF----SSDVLPTLLVYKGGELISNFIS 190

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6 Length = 217

 Score = 43.9 bits (103), Expect = 3e-05
 Identities = 20/133 (15%), Positives = 42/133 (31%), Gaps = 20/133 (15%)

Query: 120 RVKKVHSIEEFDEALRLA-KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMG 178
            V ++ + E+F E +    K   +VV            +   +  L+ +   V+F  +  
Sbjct: 100 FVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKIRA 159

Query: 179 DESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQLMGDVLYYGDSHSAVVQLHS 238
             +       +R     +P    YK  E I     I   +   +                
Sbjct: 160 SNT----GAGDRFSSDVLPTLLVYKGGELISNF--ISVAEQFAEDF-------------F 200

Query: 239 KEDVEKLIDDHKV 251
             DVE  ++++ +
Sbjct: 201 AADVESFLNEYGL 213

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 Length = 85

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 8/78 (10%)

Query: 265 CGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN-DSCMQFLRDMNVVEVPTFLFIRDGQIR 323
           C  C      V +++ +M   V    +N  EN    M++     ++ VPT +   D +  
Sbjct: 14  CPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEY----GIMAVPTIVINGDVEFI 69

Query: 324 GRYVGSGKGELIGEILRY 341
           G      K  L+  I + 
Sbjct: 70  GAP---TKEALVEAIKKR 84

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A Length = 104

 Score = 46.5 bits (111), Expect = 5e-07
 Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 7/76 (9%)

Query: 265 CGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN-DSCMQFLRDMNVVEVPTFLFIRDGQIR 323
           C PC+ + P + +L+      V F ++N DEN D   ++     V+ +PT +F +DG+  
Sbjct: 28  CAPCLILAPIIEELAEDYPQ-VGFGKLNSDENPDIAARY----GVMSLPTVIFFKDGEPV 82

Query: 324 GRYVGS-GKGELIGEI 338
              +G+  + E+   I
Sbjct: 83  DEIIGAVPREEIEIRI 98

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative splicing, FBP interacting repressor, RRM, electron transport; 2.20A {Escherichia coli O157} Length = 222

 Score = 48.3 bits (115), Expect = 7e-07
 Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 3/78 (3%)

Query: 265 CGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRG 324
           CGPC  + P + +++ +  G +  A++N D+N           +  +PT L  ++G++  
Sbjct: 42  CGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP---GTAPKYGIRGIPTLLLFKNGEVAA 98

Query: 325 RYVGSGKGELIGEILRYQ 342
             VG+     + E L   
Sbjct: 99  TKVGALSKGQLKEFLDAN 116

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} Length = 135

 Score = 46.8 bits (111), Expect = 9e-07
 Identities = 18/132 (13%), Positives = 44/132 (33%), Gaps = 21/132 (15%)

Query: 120 RVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGD 179
            ++++   +  +E     K+  VV+    S       +   +  L+R+  + +F+  + +
Sbjct: 11  ELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFPETKFVKAIVN 70

Query: 180 ESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQLMGDVLYYGDSHSAVVQLHSK 239
                    E      +P    YK+ +   +   IG  +  G  L               
Sbjct: 71  ------SCIEHYHDNCLPTIFVYKNGQIEGKF--IGIIECGGINL-------------KL 109

Query: 240 EDVEKLIDDHKV 251
           E++E  + +   
Sbjct: 110 EELEWKLSEVGA 121

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} Length = 135

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 15/99 (15%), Positives = 38/99 (38%), Gaps = 9/99 (9%)

Query: 230 HSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFA 289
              + ++   + V ++ +  K     +V+ +       C+ V   +  L+R+      F 
Sbjct: 9   FGELREISGNQYVNEVTNAEK--DLWVVIHLYRSSVPMCLVVNQHLSVLARKF-PETKFV 65

Query: 290 RMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVG 328
           +   +            +   +PT    ++GQI G+++G
Sbjct: 66  KAIVNSCI------EHYHDNCLPTIFVYKNGQIEGKFIG 98

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 137

 Score = 46.4 bits (110), Expect = 1e-06
 Identities = 13/76 (17%), Positives = 26/76 (34%), Gaps = 5/76 (6%)

Query: 265 CGPCVKVYPTVIKLSRQMAGT-VVFARMNGDEN-DSCMQF--LRDMNVVEVPTFLFIRDG 320
              C    P    LS +   T + F +++     D   ++         ++PT +  + G
Sbjct: 38  SNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTRYKVSTSPLTKQLPTLILFQGG 97

Query: 321 QIRGRYVG-SGKGELI 335
           +   R      KG  +
Sbjct: 98  KEAMRRPQIDKKGRAV 113

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} Length = 135

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 12/72 (16%)

Query: 265 CGPCVKVYPTVIKLSRQMAGTVV-------FARMNGDEN-DSCMQFLRDMNVVEVPTFLF 316
           C  C + +P +I+ S+++   +V                     +      V   PT +F
Sbjct: 43  CPHCHRDWPQLIQASKEVDVPIVMFIWGSLIGERELSAARLEMNKA----GVEGTPTLVF 98

Query: 317 IRDGQIRGRYVG 328
            ++G+I  + VG
Sbjct: 99  YKEGRIVDKLVG 110

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481

 Score = 47.5 bits (112), Expect = 3e-06
 Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 13/109 (11%)

Query: 231 SAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKH---CGPCVKVYPTVIKLSRQMAGTVV 287
           S V++L + ++ E  I D      ++V          CG   ++ P     + ++ G V 
Sbjct: 1   SDVLEL-TDDNFESRISDTGSAGLMLVE----FFAPWCGHAKRLAPEYEAAATRLKGIVP 55

Query: 288 FARMNGDENDS-CMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELI 335
            A+++   N + C ++     V   PT    RDG+  G Y G    + I
Sbjct: 56  LAKVDCTANTNTCNKY----GVSGYPTLKIFRDGEEAGAYDGPRTADGI 100

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481

 Score = 45.6 bits (107), Expect = 1e-05
 Identities = 27/171 (15%), Positives = 57/171 (33%), Gaps = 15/171 (8%)

Query: 128 EEFDEALR-LAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQC-NDVEFILVMGDESEKTK 185
           + F+  +       L++VEF A     + ++ P     + +    V    V    +    
Sbjct: 9   DNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTAN---T 65

Query: 186 ELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQLMGDVLYYGD-SHSAVVQLHSKEDVEK 244
             C +  +   P    ++  E+    +  GP    G V +    +  A V L ++E+ +K
Sbjct: 66  NTCNKYGVSGYPTLKIFRDGEEAGAYD--GPRTADGIVSHLKKQAGPASVPLRTEEEFKK 123

Query: 245 LIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDE 295
            I D        ++             +   +K +  +     FA  N + 
Sbjct: 124 FISDKDA----SIVGFFDDSFSEA---HSEFLKAASNLRDNYRFAHTNVES 167

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481

 Score = 42.2 bits (98), Expect = 2e-04
 Identities = 21/121 (17%), Positives = 52/121 (42%), Gaps = 9/121 (7%)

Query: 203 KSMEKIHEEEGIGPDQLMGDVLYYGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGL 262
           K++E+  ++   G  +         +S+   V++   E+ ++++++     K ++++   
Sbjct: 323 KALERFLQDYFDGNLKRYLKSEPIPESNDGPVKVVVAENFDEIVNNEN---KDVLIEFYA 379

Query: 263 KHCGPCVKVYPTVIKLSRQMAG--TVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDG 320
             CG C  + P   +L  +++    +V A+M+   ND    +     V   PT  F    
Sbjct: 380 PWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATANDVPSPY----EVRGFPTIYFSPAN 435

Query: 321 Q 321
           +
Sbjct: 436 K 436

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} Length = 118

 Score = 44.7 bits (106), Expect = 3e-06
 Identities = 16/91 (17%), Positives = 36/91 (39%), Gaps = 8/91 (8%)

Query: 238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND 297
           S       + + + D   +++ +       C+ V   +  L+R+      F +   +   
Sbjct: 9   SGNQYVNEVTNAEED-VWVIIHLYRSSIPMCLLVNQHLSLLARKF-PETKFVKAIVNS-- 64

Query: 298 SCMQFLRDMNVVEVPTFLFIRDGQIRGRYVG 328
            C+Q   D  +   PT    ++GQI  +++G
Sbjct: 65  -CIQHYHDNCL---PTIFVYKNGQIEAKFIG 91

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} Length = 118

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 15/132 (11%), Positives = 44/132 (33%), Gaps = 21/132 (15%)

Query: 120 RVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGD 179
            ++++   +  +E     ++  V++    S       +   +  L+R+  + +F+  + +
Sbjct: 4   ELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPETKFVKAIVN 63

Query: 180 ESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQLMGDVLYYGDSHSAVVQLHSK 239
                    +      +P    YK+ +   +   IG  +  G  L               
Sbjct: 64  ------SCIQHYHDNCLPTIFVYKNGQIEAKF--IGIIECGGINL-------------KL 102

Query: 240 EDVEKLIDDHKV 251
           E++E  + +   
Sbjct: 103 EELEWKLAEVGA 114

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A Length = 134

 Score = 44.8 bits (106), Expect = 5e-06
 Identities = 19/107 (17%), Positives = 41/107 (38%), Gaps = 8/107 (7%)

Query: 228 DSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVV 287
            +H    Q+ + +++ + + + K   K ++LD+    C  C +         +       
Sbjct: 8   QTHLNFTQIKTVDELNQALVEAK--GKPVMLDLYADWCVACKEFEKYTFSDPQVQKALAD 65

Query: 288 FARMNGD---ENDSCMQFLRDMNVVEVPTFLFI-RDGQIR--GRYVG 328
              +  +    +   +  L+ +NV+ +PT LF    GQ     R  G
Sbjct: 66  TVLLQANVTANDAQDVALLKHLNVLGLPTILFFDGQGQEHPQARVTG 112

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A Length = 361

 Score = 46.6 bits (110), Expect = 6e-06
 Identities = 36/195 (18%), Positives = 64/195 (32%), Gaps = 20/195 (10%)

Query: 128 EEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKEL 187
             F  A    K K++ +        D +     +     +  +   + ++  E E TK  
Sbjct: 155 SNFKTAAESFKGKILFI----FIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYK 210

Query: 188 CEREKIKKVPHFSFYKSMEKIHEEEGIGPDQLMGDVLYYGDSHSAVVQLHSKEDVEKLID 247
            E E++       F          EG     LM   L        V  L   ++ E +  
Sbjct: 211 PESEELTAERITEFCHRFL-----EGKIKPHLMSQELPEDWDKQPVKVL-VGKNFEDVAF 264

Query: 248 DHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG--TVVFARMNGDENDSCMQFLRD 305
           D   ++K + ++     CG C ++ P   KL         +V A+M+   N+     +  
Sbjct: 265 D---EKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE-----VEA 316

Query: 306 MNVVEVPTFLFIRDG 320
           + V   PT  F    
Sbjct: 317 VKVHSFPTLKFFPAS 331

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1 Length = 85

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 12/79 (15%), Positives = 31/79 (39%), Gaps = 10/79 (12%)

Query: 265 CGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN-DSCMQFLRDMNVVEVPTFLFIRDGQIR 323
           C  C      V +  ++    +   +++   + +  +++     ++ VP      +G + 
Sbjct: 13  CPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEY----GLMAVPAIAI--NGVV- 65

Query: 324 GRYVGS-GKGELIGEILRY 341
            R+VG+  + EL   I   
Sbjct: 66  -RFVGAPSREELFEAINDE 83

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 136

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 17/96 (17%), Positives = 30/96 (31%), Gaps = 23/96 (23%)

Query: 265 CGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQ-FLRDMN---------------- 307
           C  C    P++ +++      V F  +    +   MQ F+   N                
Sbjct: 36  CPFCNAEAPSLSQVAAANPA-VTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWAR 94

Query: 308 --VVEVPTFLFI-RDGQIRGRYVGSGKGELIGEILR 340
             V   P F+F   DG     +V +    +  + L 
Sbjct: 95  YNVPWQPAFVFYRADGTS--TFVNNPTAAMSQDELS 128

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} Length = 138

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 18/102 (17%), Positives = 37/102 (36%), Gaps = 26/102 (25%)

Query: 265 CGPCVKVYPTVIKLSRQMAG-----TVVFARMNGDEN--------------------DSC 299
           C  C+   P   +++++        TVV     G+++                    D  
Sbjct: 34  CSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPS 93

Query: 300 MQFLRDMNVVEVPTFLFI-RDGQIRGRYVGSGKGELIGEILR 340
            + L    V   PT  FI ++G++   + G  + + I + L+
Sbjct: 94  GKLLETYGVRSYPTQAFIDKEGKLVKTHPGFMEKDAILQTLK 135

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A Length = 164

 Score = 42.4 bits (99), Expect = 5e-05
 Identities = 11/93 (11%), Positives = 31/93 (33%), Gaps = 1/93 (1%)

Query: 240 EDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSC 299
             +E    +       +++ +    CG C  + P   + +     +  F  +N ++ +  
Sbjct: 33  RTLEDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEP 92

Query: 300 MQFLRDMNVVEVPTFLFI-RDGQIRGRYVGSGK 331
                  +   +P  LF+   G++    +    
Sbjct: 93  KDEDFSPDGGYIPRILFLDPSGKVHPEIINENG 125

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1 Length = 123

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 4/81 (4%)

Query: 259 DVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIR 318
           D      GPC  + P + +++ +  G +  A++N D+N           +  +PT L  +
Sbjct: 41  DRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP---GTAPKYGIRGIPTLLLFK 97

Query: 319 DGQIRGRYVGS-GKGELIGEI 338
           +G++    VG+  KG+L   +
Sbjct: 98  NGEVAATKVGALSKGQLKEFL 118

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} Length = 130

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 20/109 (18%), Positives = 39/109 (35%), Gaps = 21/109 (19%)

Query: 241 DVEKLIDDHKVDQKLIVLDVGLKHCGPCVK----VY--PTVIKLSRQMAGTVVFARMNGD 294
              + +   +   +++++    +HC  C +    V   P V +L   +    V A ++ D
Sbjct: 7   PYPEALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRL---LEARFVVASVSVD 63

Query: 295 ENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQG 343
             +   +  R   V   PTF+F+             K     E+ R  G
Sbjct: 64  TPEG-QELARRYRVPGTPTFVFL-----------VPKAGAWEEVGRLFG 100

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} Length = 151

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 16/101 (15%), Positives = 30/101 (29%), Gaps = 25/101 (24%)

Query: 265 CGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDSCMQFLRDMN---------------- 307
           CGPC K  P + K  +     +V    +  D +D+   FL+                   
Sbjct: 36  CGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNF 95

Query: 308 -------VVEVPTFLFI-RDGQIRGRYVGSGKGELIGEILR 340
                  V  +P  +        R    G    + + + ++
Sbjct: 96  MKTYGNTVGVLPFTVVEAPKCGYRQTITGEVNEKSLTDAVK 136

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus} Length = 130

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 6/66 (9%)

Query: 265 CGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN-DSCMQFLRDMNVVEVPTFLFIRDGQIR 323
           CG C ++ P   K +  +   V    +N D++     Q+     V   PT       + +
Sbjct: 47  CGHCQRLTPEWKKAATALKDVVKVGAVNADKHQSLGGQY----GVQGFPTIKIFGANKNK 102

Query: 324 GR-YVG 328
              Y G
Sbjct: 103 PEDYQG 108

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 7/66 (10%)

Query: 265 CGPCVKVYPTVIKLSRQMAGT-VVFARMNGDENDS-CMQFLRDMNVVEVPTFLFIRDGQI 322
           C  C  + P     +       V  A+++  E      +F     +  +PT    +DG+ 
Sbjct: 34  CPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRF----IINALPTIYHCKDGEF 89

Query: 323 RGRYVG 328
           R RY G
Sbjct: 90  R-RYQG 94

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A Length = 123

 Score = 39.3 bits (91), Expect = 2e-04
 Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 9/102 (8%)

Query: 229 SHSAVVQLHSKEDVEKLIDDHKVDQKLIVL-----DVGLKHCGPCVKVYPTVIKLSRQMA 283
           +    V +   E+  + ++ H                G   C  CV+  P V +  + ++
Sbjct: 2   ARYEEVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHIS 61

Query: 284 GTVVFARMNGDE----NDSCMQFLRDMNVVEVPTFLFIRDGQ 321
              VF      E     D    F +++ V  VPT L     Q
Sbjct: 62  EGCVFIYCQVGEKPYWKDPNNDFRKNLKVTAVPTLLKYGTPQ 103

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} Length = 153

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 22/98 (22%)

Query: 265 CGPCVKVYPTVIKLSRQMAG---TVVFARMNGDENDSCMQFLRDMN-------------- 307
           C  CV   P +IK +         V+      D  +S  Q+++D                
Sbjct: 40  CPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVG 99

Query: 308 ----VVEVPTFLFI-RDGQIRGRYVGSGKGELIGEILR 340
                   PT + I + G+I   YVG      + + + 
Sbjct: 100 QAFGTQVYPTSVLIGKKGEILKTYVGEPDFGKLYQEID 137

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A* Length = 116

 Score = 39.2 bits (91), Expect = 3e-04
 Identities = 17/86 (19%), Positives = 27/86 (31%), Gaps = 9/86 (10%)

Query: 247 DDHKVDQKLIVLDVGLKHCGPCVK----VYPTVIKLSRQMAGTVVFARMNGDENDSCMQF 302
           DD K + +L++ +     C  C +    + P         A  V   +M           
Sbjct: 14  DDDKAELRLLMFEQ--PGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPP---GL 68

Query: 303 LRDMNVVEVPTFLFIRDGQIRGRYVG 328
                V   PTF+ +      GR  G
Sbjct: 69  ELARPVTFTPTFVLMAGDVESGRLEG 94

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A Length = 164

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 14/103 (13%), Positives = 31/103 (30%), Gaps = 27/103 (26%)

Query: 265 CGPCVKVYPTVIKLSRQMAG------TVVFARMNGDEN--------------------DS 298
           C  C+       K ++          TV       ++                     D+
Sbjct: 50  CPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYPKLPVVTDN 109

Query: 299 CMQFLRDMNVVEVPTFLFI-RDGQIRGRYVGSGKGELIGEILR 340
                +++N+   P++  I +DG ++    GS        ++R
Sbjct: 110 GGTIAQNLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIR 152

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Length = 133

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 5/59 (8%)

Query: 265 CGPCVKVYPTVIKLSRQMAG--TVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQ 321
           CG C ++ P    L ++  G   +V A+M+   ND          V   PT  F   G 
Sbjct: 37  CGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITND---QYKVEGFPTIYFAPSGD 92

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} Length = 158

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 20/84 (23%)

Query: 265 CGPCVKVYPTVIKLSRQMA--GTVVFARMNGDEN----------------DSCMQFLRDM 306
           C  C    P++ +L +       VV A +N ++                 D+  Q  +  
Sbjct: 53  CPYCRDEMPSMDRLVKSFPKGDLVVLA-VNVEKRFPEKYRRAPVSFNFLSDATGQVQQRY 111

Query: 307 NVVEVPTFLFI-RDGQIRGRYVGS 329
               +P    + R G IR R  G 
Sbjct: 112 GANRLPDTFIVDRKGIIRQRVTGG 135

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A Length = 151

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 16/97 (16%), Positives = 33/97 (34%), Gaps = 21/97 (21%)

Query: 265 CGPCVKVYPTVIKLSRQMAGT-VVFARMNGDEN-DSCMQFLRDM---------------- 306
           C PC K +P +    +      V    +N  E+  +   F++                  
Sbjct: 38  CEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLD 97

Query: 307 --NVVEVPTFLFI-RDGQIRGRYVGSGKGELIGEILR 340
             +V  +PT   I  +G++     G+    +I + + 
Sbjct: 98  AYDVSPLPTTFLINPEGKVVKVVTGTMTESMIHDYMN 134

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 133

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 9/69 (13%)

Query: 265 CGPCVKVYPTVIKLSRQMA----GTVVFARMNGDEN-DSCMQFLRDMNVVEVPTFLFIRD 319
           CG C  + P     + ++     G V  A ++   N     ++     +   PT    + 
Sbjct: 37  CGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRY----GIRGFPTIKIFQK 92

Query: 320 GQIRGRYVG 328
           G+    Y G
Sbjct: 93  GESPVDYDG 101

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} Length = 154

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 24/88 (27%)

Query: 265 CGPCVKVYPTVIKLSRQMAGT--VVFARMNGDEN--------------------DSCMQF 302
           C PC +  P++++L+  MAG    +   ++ DE                     D+  + 
Sbjct: 40  CPPCREEIPSMMRLNAAMAGKPFRMLC-VSIDEGGKVAVEEFFRKTGFTLPVLLDADKRV 98

Query: 303 LRDMNVVEVPTFLFI-RDGQIRGRYVGS 329
            +      VP    I R G I  + VG+
Sbjct: 99  GKLYGTTGVPETFVIDRHGVILKKVVGA 126

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A Length = 148

 Score = 38.4 bits (90), Expect = 8e-04
 Identities = 10/101 (9%), Positives = 29/101 (28%), Gaps = 25/101 (24%)

Query: 265 CGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSC------MQFLRDMN----------- 307
           C  C +  P V +   +    +    ++   ++         +   + +           
Sbjct: 41  CHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDH 100

Query: 308 -------VVEVPTFLFI-RDGQIRGRYVGSGKGELIGEILR 340
                     VP +    + GQ+R    G    +++ + + 
Sbjct: 101 ALTDAFENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVN 141

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 8e-04
 Identities = 30/196 (15%), Positives = 66/196 (33%), Gaps = 57/196 (29%)

Query: 159 PFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQ 218
            F+ +    C DV+         +  K +  +E+I  +        +       G    +
Sbjct: 28  AFVDNF--DCKDVQ---------DMPKSILSKEEIDHI--------IMSKDAVSGT--LR 66

Query: 219 LMGDVLYYGDSHSAVVQLHSKEDVEKLIDD-HKVDQKLIVLDVGLKHCGPCVKVYPTVIK 277
           L   +L              +E V+K +++  +++ K ++  +  +   P +     + +
Sbjct: 67  LFWTLLSKQ-----------EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115

Query: 278 LSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDG--QIR-GRYV------G 328
             R               ND+  Q     NV  +  +L +R    ++R  + V      G
Sbjct: 116 RDRL-------------YNDN--QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG 160

Query: 329 SGKGELIGEILRYQGV 344
           SGK  +  ++     V
Sbjct: 161 SGKTWVALDVCLSYKV 176

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	348
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	100.0
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	100.0
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.97
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.96
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	99.96
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.96
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	99.95
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.95
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	99.93
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	99.92
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	99.91
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	99.91
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	99.91
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	99.9
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	99.9
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.9
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	99.89
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	99.87
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	99.87
2qsi_A	137	Putative hydrogenase expression/formation protein;	99.85
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	99.84
2qsi_A	137	Putative hydrogenase expression/formation protein;	99.84
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	99.84
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	99.84
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	99.83
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	99.83
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	99.83
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	99.83
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	99.82
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	99.82
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	99.82
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	99.81
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	99.81
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	99.81
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	99.81
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	99.81
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	99.81
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	99.81
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	99.81
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	99.81
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	99.8
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	99.8
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	99.8
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	99.8
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	99.8
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	99.8
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	99.8
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	99.8
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	99.8
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	99.8
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	99.79
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	99.79
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	99.79
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	99.79
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	99.79
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	99.79
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	99.79
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	99.79
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	99.79
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	99.79
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	99.78
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	99.78
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	99.78
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	99.78
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	99.78
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	99.78
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	99.78
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	99.78
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	99.78
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	99.78
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	99.78
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	99.78
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.77
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	99.77
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	99.77
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	99.77
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	99.77
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	99.77
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	99.77
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	99.77
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	99.77
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	99.77
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	99.77
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	99.77
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	99.77
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	99.77
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	99.76
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	99.76
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	99.76
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	99.76
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	99.76
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	99.76
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	99.76
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	99.76
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	99.76
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	99.76
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	99.76
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	99.75
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	99.75
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	99.75
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	99.75
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	99.75
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	99.75
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	99.75
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	99.75
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.75
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	99.75
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	99.74
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	99.74
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	99.74
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	99.74
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	99.74
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	99.74
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	99.74
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	99.74
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	99.74
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	99.73
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	99.73
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	99.73
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	99.73
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	99.73
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	99.73
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	99.73
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.73
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	99.73
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	99.73
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	99.73
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	99.73
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	99.73
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	99.72
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	99.72
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	99.72
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.72
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	99.72
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	99.72
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	99.72
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	99.72
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	99.72
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	99.71
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	99.71
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	99.71
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	99.71
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	99.71
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	99.71
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	99.71
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	99.71
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	99.71
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	99.7
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	99.7
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	99.7
2l57_A	126	Uncharacterized protein; structural genomics, unkn	99.7
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	99.7
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.7
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	99.7
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	99.7
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	99.69
1mek_A	120	Protein disulfide isomerase; electron transport, r	99.69
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	99.69
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	99.69
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	99.69
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	99.69
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	99.69
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.68
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	99.68
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	99.68
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	99.68
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	99.68
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	99.67
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	99.67
1mek_A	120	Protein disulfide isomerase; electron transport, r	99.67
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	99.67
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.67
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	99.66
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	99.66
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	99.66
2kuc_A	130	Putative disulphide-isomerase; structural genomics	99.66
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	99.65
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	99.65
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	99.64
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	99.64
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	99.64
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	99.63
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.63
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	99.63
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	99.63
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	99.63
2l57_A	126	Uncharacterized protein; structural genomics, unkn	99.62
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.62
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	99.41
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	99.61
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	99.61
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	99.61
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.6
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	99.6
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	99.59
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	99.59
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	99.38
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	99.59
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	99.59
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	99.58
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	99.36
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	99.57
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	99.57
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	99.56
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	99.55
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	99.54
2kuc_A	130	Putative disulphide-isomerase; structural genomics	99.54
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.53
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	99.53
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	99.52
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	99.51
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	99.51
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	99.51
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	99.51
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	99.26
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	99.5
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	99.5
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	99.49
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	99.48
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	99.48
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	99.48
3raz_A	151	Thioredoxin-related protein; structural genomics,	99.48
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	99.48
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	99.48
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	99.47
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	99.47
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	99.46
3ira_A	173	Conserved protein; methanosarcina mazei,structural	99.46
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.46
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	99.46
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	99.46
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	99.46
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	99.46
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	99.45
4evm_A	138	Thioredoxin family protein; structural genomics, n	99.45
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	99.45
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	99.45
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	99.44
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	99.44
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	99.43
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	99.43
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.43
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	99.43
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	99.42
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	99.42
3raz_A	151	Thioredoxin-related protein; structural genomics,	99.42
3ira_A	173	Conserved protein; methanosarcina mazei,structural	99.42
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	99.41
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	99.41
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	99.41
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	99.41
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	99.41
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	99.41
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.41
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	99.4
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	99.4
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	99.4
1ttz_A	87	Conserved hypothetical protein; structural genomic	99.4
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	99.39
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	99.39
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	99.39
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	99.39
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	99.39
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	99.38
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	99.37
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	99.37
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	99.37
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	99.37
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	99.37
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	99.35
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	99.35
2lrt_A	152	Uncharacterized protein; structural genomics, thio	99.35
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	99.35
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	99.35
2lrt_A	152	Uncharacterized protein; structural genomics, thio	99.35
1ttz_A	87	Conserved hypothetical protein; structural genomic	99.34
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	99.34
4evm_A	138	Thioredoxin family protein; structural genomics, n	99.34
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	99.33
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	99.33
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	99.33
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	99.33
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	99.33
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	99.33
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	99.33
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	99.32
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	99.32
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	99.32
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	99.32
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	99.32
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	99.32
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	99.32
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	99.31
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	99.3
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	99.3
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	99.3
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	99.3
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	99.29
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	99.29
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	99.29
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	99.28
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	99.28
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	99.28
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	99.27
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	99.27
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	99.27
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	99.26
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	99.26
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	99.26
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	99.26
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	99.25
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	99.25
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	98.9
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	99.24
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	99.24
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	99.23
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	99.23
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	99.22
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	99.21
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	99.2
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	98.83
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	99.2
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	99.2
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	99.2
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	99.2
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	99.2
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	98.82
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	99.19
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	99.19
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	99.18
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	99.18
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.17
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	99.15
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	99.15
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	99.15
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	99.14
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	99.14
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.13
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.13
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	99.13
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	99.13
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	99.13
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	99.12
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	98.72
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	99.12
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	99.11
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	99.11
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	99.1
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	99.1
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	99.09
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	99.09
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	99.08
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	99.06
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	99.06
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	99.06
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	99.05
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.05
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	99.04
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	99.04
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	99.03
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	99.03
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	99.03
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	99.03
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	99.03
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	99.01
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	99.0
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	98.97
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	98.95
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	98.95
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	98.94
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	98.92
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	98.92
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	98.92
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	98.92
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	98.9
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	98.9
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	98.89
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	98.89
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	98.88
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	98.87
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	98.87
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	98.87
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	98.87
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	98.87
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	98.86
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	98.85
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	98.84
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	98.84
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	98.83
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	98.83
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	98.83
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	98.83
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	98.82
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	98.81
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	98.79
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	98.79
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	98.78
1kte_A	105	Thioltransferase; redox-active center, electron tr	98.78
3me7_A	170	Putative uncharacterized protein; electron transfe	98.77
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	98.77
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	98.76
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	98.76
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	98.75
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	98.74
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	98.74
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	98.71
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	98.71
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	98.7
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	98.69
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	98.67
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	98.66
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	98.65
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	98.65
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	98.64
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	98.63
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	98.63
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	98.63
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	98.63
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	98.62
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	98.62
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	98.62
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	98.61
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	98.61
1kte_A	105	Thioltransferase; redox-active center, electron tr	98.57
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	98.57
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	98.57
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	98.57
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	98.55
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	98.54
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	98.54
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	98.53
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	98.53
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	98.52
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	98.52
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	98.52
3me7_A	170	Putative uncharacterized protein; electron transfe	98.51
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	98.51
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	98.51
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	98.51
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	98.49
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	98.49
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	98.48
2l4c_A	124	Endoplasmic reticulum resident protein 27; ERP27,	98.48
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	98.48
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	98.47
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	98.46
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	98.46
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	98.46
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	98.46
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	98.46
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	98.45
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	98.44
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	98.44
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	98.43
2l4c_A	124	Endoplasmic reticulum resident protein 27; ERP27,	98.42
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	98.41
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	98.41
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	98.41
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	98.4
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	98.4
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	98.38
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	98.38
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	98.37
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	98.37
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	98.36
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	98.35
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	98.35
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	98.34
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	98.32
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	98.32
2ec4_A	178	FAS-associated factor 1; UAS domain, protein FAF1,	98.32
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	98.3
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	98.29
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	98.29
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	98.28
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	98.26
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	98.25
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	98.24
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	98.23
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	98.23
1z6m_A	175	Conserved hypothetical protein; structural genomic	98.22
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	98.21
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	98.21
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	98.21
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	98.2
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	98.2
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	98.19
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	98.18
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	98.15
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	98.14
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	98.14
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	98.13
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	98.12
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	98.11
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	98.1
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	98.08
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	98.07
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	98.06
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	98.05
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	98.05

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=100.00  E-value=2e-36  Score=272.26  Aligned_cols=214  Identities=17%  Similarity=0.331  Sum_probs=179.0

Q ss_pred             CCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC----cEEEEEeCCCchhHHHHHHHcCc
Q 018973          118 DERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND----VEFILVMGDESEKTKELCEREKI  193 (348)
Q Consensus       118 ~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~----v~f~~vd~d~~~~~~~l~~~~~V  193 (348)
                      .+.+..+ +.++|++.+.  ++++|+|+|||+||++|+.+.|.|+++++++++    +.|+.||+++   ..+++++|+|
T Consensus        14 ~~~v~~l-~~~~~~~~~~--~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~---~~~l~~~~~v   87 (241)
T 3idv_A           14 ENGVLVL-NDANFDNFVA--DKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATS---ASVLASRFDV   87 (241)
T ss_dssp             ETTEEEE-CTTTHHHHHT--TCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTT---CHHHHHHTTC
T ss_pred             CCCcEEe-cccCHHHHHh--cCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccC---CHHHHHhcCC
Confidence            4567776 8899999986  689999999999999999999999999998753    9999999998   5569999999


Q ss_pred             CCCCeEEEeecccccccccc-CCCCcccccccccC----CCccceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhh
Q 018973          194 KKVPHFSFYKSMEKIHEEEG-IGPDQLMGDVLYYG----DSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPC  268 (348)
Q Consensus       194 ~~~Pt~~~~~~g~~v~~~~G-~~~~~l~~~v~~~~----~~~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C  268 (348)
                      +++||+++|++|+.+. +.| ...+.+...+....    ..........+.+++++.+..    +++++|+||++||++|
T Consensus        88 ~~~Pt~~~~~~g~~~~-~~g~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~f~a~wC~~C  162 (241)
T 3idv_A           88 SGYPTIKILKKGQAVD-YEGSRTQEEIVAKVREVSQPDWTPPPEVTLVLTKENFDEVVND----ADIILVEFYAPWCGHC  162 (241)
T ss_dssp             CSSSEEEEEETTEEEE-CCSCSCHHHHHHHHHHHHSTTCCCCCCSSEECCTTTHHHHHHH----CSEEEEEEECTTCTGG
T ss_pred             CcCCEEEEEcCCCccc-ccCcccHHHHHHHHhhccCcccccccccceeccHHHHHHhhcc----CCeEEEEEECCCCHHH
Confidence            9999999999999885 555 44555544333221    112223444567888888864    5899999999999999


Q ss_pred             hhhhhHHHHHHHHhCCc---EEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhCC
Q 018973          269 VKVYPTVIKLSRQMAGT---VVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS-GKGELIGEILRYQGV  344 (348)
Q Consensus       269 ~~~~p~l~~la~~~~~~---v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~~  344 (348)
                      +.+.|.+.++++++.++   +.|+.+|++++++   ++++|+|.++||+++|++|+.+. +.|. +.++|.++|.++.+.
T Consensus       163 ~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~~~~---l~~~~~v~~~Pt~~~~~~g~~~~-~~g~~~~~~l~~~l~~~~~~  238 (241)
T 3idv_A          163 KKLAPEYEKAAKELSKRSPPIPLAKVDATAETD---LAKRFDVSGYPTLKIFRKGRPYD-YNGPREKYGIVDYMIEQSGA  238 (241)
T ss_dssp             GGTHHHHHHHHHHHHTSSSCCCEEEEETTTCHH---HHHHTTCCSSSEEEEEETTEEEE-CCSCCSHHHHHHHHHHHTTC
T ss_pred             HHhHHHHHHHHHHHhccCCcEEEEEEECCCCHH---HHHHcCCcccCEEEEEECCeEEE-ecCCCCHHHHHHHHHhhhCC
Confidence            99999999999998543   9999999999887   99999999999999999999887 7888 999999999999876


Q ss_pred             CC
Q 018973          345 RV  346 (348)
Q Consensus       345 ~~  346 (348)
                      .+
T Consensus       239 ~~  240 (241)
T 3idv_A          239 AA  240 (241)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=100.00  E-value=5.4e-34  Score=254.46  Aligned_cols=212  Identities=16%  Similarity=0.199  Sum_probs=167.0

Q ss_pred             EecCHHHHHHHH-HhcCCCEEEEEEeCC-CCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEE
Q 018973          123 KVHSIEEFDEAL-RLAKNKLVVVEFAAS-RSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFS  200 (348)
Q Consensus       123 ~v~s~~~f~~~l-~~~~~k~vvV~F~a~-wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~  200 (348)
                      ...+.+++++.+ .+.++..++|+||++ ||++|+.+.|.|+++++.++++.|++||+++.+ .++++++|||+++||++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~v~lv~f~~~~~C~~C~~~~~~~~~la~~~~~v~~~~vd~~~~~-~~~~~~~~~v~~~Pt~~   83 (226)
T 1a8l_A            5 SDADKKVIKEEFFSKMVNPVKLIVFVRKDHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPE-GKELAKRYRIDRAPATT   83 (226)
T ss_dssp             CHHHHHHHHHHTGGGCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTTCTTEEEEEEETTSHH-HHHHHHHTTCCSSSEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCeEEEEEecCCCCchhHHHHHHHHHHHhhCCceEEEEEeCCCcc-cHHHHHHcCCCcCceEE
Confidence            345677888888 555677888999999 999999999999999988777999999998622 35699999999999999


Q ss_pred             Eeeccccc-cccccCCC-CcccccccccCCCccceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHH
Q 018973          201 FYKSMEKI-HEEEGIGP-DQLMGDVLYYGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKL  278 (348)
Q Consensus       201 ~~~~g~~v-~~~~G~~~-~~l~~~v~~~~~~~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~l  278 (348)
                      +|++|+.. .++.|... +.+...+............ .+.+.++.+...   .+..++|+||++||++|+.+.|.+.++
T Consensus        84 ~~~~g~~~~~~~~G~~~~~~l~~~l~~~l~~~~~~~~-l~~~~~~~~~~~---~~~~~~v~F~a~wC~~C~~~~p~~~~l  159 (226)
T 1a8l_A           84 ITQDGKDFGVRYFGLPAGHEFAAFLEDIVDVSREETN-LMDETKQAIRNI---DQDVRILVFVTPTCPYCPLAVRMAHKF  159 (226)
T ss_dssp             EEETTBCCSEEEESCCCTTHHHHHHHHHHHHHHTCCC-CCHHHHHHHTTC---CSCEEEEEEECSSCTTHHHHHHHHHHH
T ss_pred             EEcCCceeeEEEeccCcHHHHHHHHHHHHhhcCCCCC-CCHHHHHHHHhc---CCCcEEEEEeCCCCCccHHHHHHHHHH
Confidence            99999875 66777532 3332222111110111112 244556555432   234449999999999999999999999


Q ss_pred             HHHhC----CcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCC-ChHHHHHHHHHHh
Q 018973          279 SRQMA----GTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS-GKGELIGEILRYQ  342 (348)
Q Consensus       279 a~~~~----~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~  342 (348)
                      ++.++    +++.++.+|++++++   ++++|+|.++||+++|++|+.+.++.|. +.++|.++|++++
T Consensus       160 ~~~~~~~~~~~v~~~~vd~~~~~~---l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l  225 (226)
T 1a8l_A          160 AIENTKAGKGKILGDMVEAIEYPE---WADQYNVMAVPKIVIQVNGEDRVEFEGAYPEKMFLEKLLSAL  225 (226)
T ss_dssp             HHHHHHTTCCCEEEEEEEGGGCHH---HHHHTTCCSSCEEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             HHhcccccCCcEEEEEEEcccCHH---HHHhCCCcccCeEEEEeCCceeEEEcCCCCHHHHHHHHHHhh
Confidence            99986    579999999999887   9999999999999999999999999999 8899999999875

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.97  E-value=3.5e-31  Score=236.99  Aligned_cols=204  Identities=14%  Similarity=0.156  Sum_probs=158.9

Q ss_pred             cCHHHHHHHH-HhcCCCEEEEEEe-----CCCCHHHHhhhhHHHHHHHHc--CC-cEEEEEeCCCchhHHHHHHHcCcCC
Q 018973          125 HSIEEFDEAL-RLAKNKLVVVEFA-----ASRSLDSSKIYPFMVDLSRQC--ND-VEFILVMGDESEKTKELCEREKIKK  195 (348)
Q Consensus       125 ~s~~~f~~~l-~~~~~k~vvV~F~-----a~wC~~C~~~~p~l~~la~~~--~~-v~f~~vd~d~~~~~~~l~~~~~V~~  195 (348)
                      .+.+++++.+ .+. .++|+|.||     ++||++|+.+.|.|+++++++  .+ +.|++||+++   .+++|++|||++
T Consensus         6 ~~~~~l~~~~~~~~-~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~~---~~~l~~~~~v~~   81 (229)
T 2ywm_A            6 DVRMQLKELAQKEF-KEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFT---HKEETEKYGVDR   81 (229)
T ss_dssp             HHHHHHHHHHHHHC-CSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECTTT---CHHHHHHTTCCB
T ss_pred             HHHHHHHHHHHHhc-cCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCcc---cHHHHHHcCCCc
Confidence            3567788888 444 455555555     899999999999999998876  44 9999999998   566999999999


Q ss_pred             CCeEEEeeccccccccccCC-CCcccccccccCCCccceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhH
Q 018973          196 VPHFSFYKSMEKIHEEEGIG-PDQLMGDVLYYGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPT  274 (348)
Q Consensus       196 ~Pt~~~~~~g~~v~~~~G~~-~~~l~~~v~~~~~~~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~  274 (348)
                      +||+++|++|+...++.|.. .+.+...+............+ +.+.++.++..   .+..++++||++||++|+.+.|.
T Consensus        82 ~Ptl~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~~~~~l-~~~~~~~~~~~---~~~~~~v~F~a~wC~~C~~~~~~  157 (229)
T 2ywm_A           82 VPTIVIEGDKDYGIRYIGLPAGLEFTTLINGIFHVSQRKPQL-SEKTLELLQVV---DIPIEIWVFVTTSCGYCPSAAVM  157 (229)
T ss_dssp             SSEEEEESSSCCCEEEESCCCTTHHHHHHHHHHHHHTTCCSC-CHHHHHHHTTC---CSCEEEEEEECTTCTTHHHHHHH
T ss_pred             CcEEEEECCCcccceecCCccHHHHHHHHHHHHhccCCccCC-CHHHHHHHHhc---CCCeEEEEEECCCCcchHHHHHH
Confidence            99999999888888888854 333333222211111122222 45667766542   34555889999999999999999


Q ss_pred             HHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973          275 VIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS-GKGELIGEILRYQG  343 (348)
Q Consensus       275 l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~  343 (348)
                      +++++.++ +++.++.+|++++++   ++++|+|.++||+++  +|+ +.++.|. +.++|.++|.++++
T Consensus       158 ~~~~~~~~-~~v~~~~vd~~~~~~---l~~~~~v~~~Pt~~~--~G~-~~~~~G~~~~~~l~~~l~~~~~  220 (229)
T 2ywm_A          158 AWDFALAN-DYITSKVIDASENQD---LAEQFQVVGVPKIVI--NKG-VAEFVGAQPENAFLGYIMAVYE  220 (229)
T ss_dssp             HHHHHHHC-TTEEEEEEEGGGCHH---HHHHTTCCSSSEEEE--GGG-TEEEESCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHC-CCeEEEEEECCCCHH---HHHHcCCcccCEEEE--CCE-EEEeeCCCCHHHHHHHHHHHhh
Confidence            99999998 479999999999887   999999999999988  888 6778999 89999999988753

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.96  E-value=3e-29  Score=227.19  Aligned_cols=207  Identities=13%  Similarity=0.131  Sum_probs=160.8

Q ss_pred             ceEecCHHHHHHHHHhcCCCEEEEEEeCCC--CHHHHhhhhHHHHHHHHcCC------cEEEEEeCCCchhHHHHHHHcC
Q 018973          121 VKKVHSIEEFDEALRLAKNKLVVVEFAASR--SLDSSKIYPFMVDLSRQCND------VEFILVMGDESEKTKELCEREK  192 (348)
Q Consensus       121 v~~v~s~~~f~~~l~~~~~k~vvV~F~a~w--C~~C~~~~p~l~~la~~~~~------v~f~~vd~d~~~~~~~l~~~~~  192 (348)
                      +.+..+.++|++.+++ -+++|+|+||++|  |++|+.+.|.++++++.++.      +.|+++|+|+   ..+++++||
T Consensus         8 ~~~~~~~~ql~~~~~~-~~~pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d~---~~~~~~~~g   83 (243)
T 2hls_A            8 DLSEDFRRELRETLAE-MVNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRES---DSDKFSEFK   83 (243)
T ss_dssp             CCCHHHHHHHHHHHTT-CCSCEEEEEEECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETTT---THHHHHHTT
T ss_pred             hCCHHHHHHHHHHHHh-CCCCEEEEEEeCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCCc---CHHHHHhcC
Confidence            4556677888888864 3689999999999  99999999999999999765      9999999998   566999999


Q ss_pred             cCCCCeEEEeeccccccccccCCC-CcccccccccCCCccceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhh
Q 018973          193 IKKVPHFSFYKSMEKIHEEEGIGP-DQLMGDVLYYGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKV  271 (348)
Q Consensus       193 V~~~Pt~~~~~~g~~v~~~~G~~~-~~l~~~v~~~~~~~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~  271 (348)
                      |+++||+++| +|  ..++.|... ..+...+............+ +.+.++. +.+.  .++.+++.||++||++|+.+
T Consensus        84 v~~~Pt~~i~-~g--~~~~~G~~~~~~l~~fv~~~l~~~~~~~~l-~~~~~~~-~~~~--~~~~~vv~F~a~wC~~C~~~  156 (243)
T 2hls_A           84 VERVPTVAFL-GG--EVRWTGIPAGEEIRALVEVIMRLSEDESGL-EDATKEA-LKSL--KGRVHIETIITPSCPYCPYA  156 (243)
T ss_dssp             CCSSSEEEET-TT--TEEEESCCCTTHHHHHHHHHHHHHTTCCCC-CHHHHHH-HHHC--CSCEEEEEEECSSCSSHHHH
T ss_pred             CCcCCEEEEE-CC--ceeEcCCCcHHHHHHHHHHHHhccCCCCCC-CHHHHHH-HHHc--CCCcEEEEEECCCCCCcHHH
Confidence            9999999999 66  667777543 33332222110000011111 2333333 3322  46788999999999999999


Q ss_pred             hhHHHHHHHHhC----CcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhCCC
Q 018973          272 YPTVIKLSRQMA----GTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS-GKGELIGEILRYQGVR  345 (348)
Q Consensus       272 ~p~l~~la~~~~----~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~~~  345 (348)
                      .|.|.+++..+.    +++.+..+|++++++   ++++|+|.++||+++  +|+++  +.|. +.++|.++|.+.++.+
T Consensus       157 ~p~l~~la~~~~~~~~~~v~~~~vd~~~~~~---~~~~~~V~~vPt~~i--~G~~~--~~G~~~~~~l~~~l~~~~~~~  228 (243)
T 2hls_A          157 VLLAHMFAYEAWKQGNPVILSEAVEAYENPD---IADKYGVMSVPSIAI--NGYLV--FVGVPYEEDFLDYVKSAAEGR  228 (243)
T ss_dssp             HHHHHHHHHHHHHTTCCCEEEEEEETTTCHH---HHHHTTCCSSSEEEE--TTEEE--EESCCCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHcccccCCcEEEEEEECccCHH---HHHHcCCeeeCeEEE--CCEEE--EeCCCCHHHHHHHHHHHhhcc
Confidence            999999999882    469999999999887   999999999999888  89865  7888 8999999999988754

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=99.96  E-value=5.7e-29  Score=247.84  Aligned_cols=93  Identities=23%  Similarity=0.400  Sum_probs=82.1

Q ss_pred             CCCCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCCCchhHHHHHHHcCc
Q 018973          116 PRDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGDESEKTKELCEREKI  193 (348)
Q Consensus       116 ~~~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d~~~~~~~l~~~~~V  193 (348)
                      ...+.|..+ +.++|++.+.  ++++|+|+|||+||++|+.+.|.|+++++++.+  +.|++||+++   .+++|++|+|
T Consensus        11 ~~~~~v~~l-~~~~f~~~~~--~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~v~~~~vd~~~---~~~l~~~~~v   84 (504)
T 2b5e_A           11 PEDSAVVKL-ATDSFNEYIQ--SHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTE---NQDLCMEHNI   84 (504)
T ss_dssp             CTTSSCEEC-CTTTHHHHHT--TCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTT---CHHHHHHTTC
T ss_pred             CCCCCcEEC-CHHHHHHHHh--cCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccCCeEEEEEECCC---CHHHHHhcCC
Confidence            344567777 8899999986  689999999999999999999999999999974  9999999999   5669999999


Q ss_pred             CCCCeEEEeecccc--ccccccC
Q 018973          194 KKVPHFSFYKSMEK--IHEEEGI  214 (348)
Q Consensus       194 ~~~Pt~~~~~~g~~--v~~~~G~  214 (348)
                      +++||+++|++|+.  +.++.|.
T Consensus        85 ~~~Pt~~~~~~g~~~~~~~~~G~  107 (504)
T 2b5e_A           85 PGFPSLKIFKNSDVNNSIDYEGP  107 (504)
T ss_dssp             CSSSEEEEEETTCTTCEEECCSC
T ss_pred             CcCCEEEEEeCCccccceeecCC
Confidence            99999999999987  6666663

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.96  E-value=2.5e-28  Score=255.34  Aligned_cols=212  Identities=16%  Similarity=0.220  Sum_probs=172.2

Q ss_pred             CCceEecCHHHHHHHHHhcC-CCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCC
Q 018973          119 ERVKKVHSIEEFDEALRLAK-NKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKV  196 (348)
Q Consensus       119 ~~v~~v~s~~~f~~~l~~~~-~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~  196 (348)
                      +.|..+ +.++|++++...+ ++.++|.||++||++|+.+.|.|+++++++.+ +.|+.+|+++   ...+|++|+|+++
T Consensus       543 ~~v~~l-~~~~f~~~v~~~~~~~~~lv~F~ap~C~~c~~~~p~~~~lA~~~~~~v~~~~vd~~~---~~~l~~~~~v~~~  618 (780)
T 3apo_A          543 PSVVSL-TPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGLINVGSVDCGQ---YHSFCTQENVQRY  618 (780)
T ss_dssp             CSEEEC-CHHHHHHHTTTCCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEETTT---THHHHHHTTCCSS
T ss_pred             cceeec-CcccHHHHhhccCCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCCeEEEEEECcc---hHHHHHHcCCCCC
Confidence            356666 7899999887533 67899999999999999999999999999976 9999999998   5569999999999


Q ss_pred             CeEEEeecccc----cccccc-C-CCCcccccccccCCCccceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhh
Q 018973          197 PHFSFYKSMEK----IHEEEG-I-GPDQLMGDVLYYGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVK  270 (348)
Q Consensus       197 Pt~~~~~~g~~----v~~~~G-~-~~~~l~~~v~~~~~~~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~  270 (348)
                      ||+++|+.|..    ...+.| . +.+.+...+....  ...+..+ +.+++++.+..   .+++++|+||++||++|+.
T Consensus       619 Pti~~~~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~--~~~v~~l-~~~~~~~~~~~---~~~~v~v~F~a~wC~~C~~  692 (780)
T 3apo_A          619 PEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGLGFL--PQASIDL-TPQTFNEKVLQ---GKTHWVVDFYAPWSGPSQN  692 (780)
T ss_dssp             SEEEEECCCSSSCCSCEECCCSCCSHHHHHHHHHTTS--CCCSEEE-CHHHHHHHTTT---CSSCEEEEEECTTCHHHHH
T ss_pred             CeEEEEcCCCcCccchhhcCCCCCCHHHHHHHHhhhc--ccccccC-CHHHHHHHHhc---CCCeEEEEEECCCCHHHHH
Confidence            99999987754    233455 2 3333433322221  2234444 56778765544   4789999999999999999


Q ss_pred             hhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeC----C-ChHHHHHHHHHHhC
Q 018973          271 VYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVG----S-GKGELIGEILRYQG  343 (348)
Q Consensus       271 ~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G----~-~~~~L~~~l~~~~~  343 (348)
                      +.|.++++++++++++.|+.||+++++.   ++++|+|.++||+++|++|+.+.++.|    . +.++|.++|.+++.
T Consensus       693 ~~p~~~~la~~~~~~~~~~~vd~~~~~~---~~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~g~~~~~~l~~~l~~~l~  767 (780)
T 3apo_A          693 FAPEFELLARMIKGKVRAGKVDCQAYPQ---TCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLE  767 (780)
T ss_dssp             HHHHHHHHHHHHTTTCEEEEEETTTCHH---HHHHTTCCSSSEEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhcCCceEEEEECCCCHH---HHHhcCCCcCCEEEEEcCCCccccccCcccCCcCHHHHHHHHHHHHH
Confidence            9999999999998789999999999887   999999999999999999987776666    4 89999999999864

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=99.95  E-value=1.3e-27  Score=227.96  Aligned_cols=213  Identities=16%  Similarity=0.225  Sum_probs=165.5

Q ss_pred             CCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCC--
Q 018973          119 ERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKK--  195 (348)
Q Consensus       119 ~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~--  195 (348)
                      +.+.++ +.+++...+.. ..++++|.||++||++|+.+.|.|+++++++.+ +.|+.||+++.. ...+++.|||+.  
T Consensus       117 p~v~~~-~~~~~~~~~~~-~~~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~~~i~f~~vd~~~~~-~~~~~~~fgi~~~~  193 (361)
T 3uem_A          117 PLVIEF-TEQTAPKIFGG-EIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHTD-NQRILEFFGLKKEE  193 (361)
T ss_dssp             CSEEEC-STTTHHHHHSC-SCCEEEEEECCSSSSSHHHHHHHHHHHHGGGTTTCEEEEECTTSGG-GHHHHHHTTCCTTT
T ss_pred             Ccceec-CcccHHHHhcC-CCCcEEEEEEeCCchhHHHHHHHHHHHHHHccCceEEEEecCChHH-HHHHHHHcCCCccC
Confidence            345555 78888887753 456889999999999999999999999999987 999999999321 567999999998  


Q ss_pred             CCeEEEeeccccccccc---c-CCCCccccccccc--CC--------------CccceeecCChhhHHHHhhhcccCCcE
Q 018973          196 VPHFSFYKSMEKIHEEE---G-IGPDQLMGDVLYY--GD--------------SHSAVVQLHSKEDVEKLIDDHKVDQKL  255 (348)
Q Consensus       196 ~Pt~~~~~~g~~v~~~~---G-~~~~~l~~~v~~~--~~--------------~~~~v~~~~s~~~~~~~l~~~~~~~k~  255 (348)
                      +|+++++..|+...++.   | .+.+.+...+...  +.              ....+..+ +.+++++.+..   .+++
T Consensus       194 ~P~~~~~~~~~~~~ky~~~~~~~~~~~l~~fi~~~l~g~~~~~~~s~~~p~~~~~~~v~~l-~~~~f~~~~~~---~~k~  269 (361)
T 3uem_A          194 CPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKIKPHLMSQELPEDWDKQPVKVL-VGKNFEDVAFD---EKKN  269 (361)
T ss_dssp             CSEEEEEECC--CCEECCSSCCCCHHHHHHHHHHHHTTCSCCCCBCCCCCTTTTTSSSEEE-CTTTHHHHHTC---TTCE
T ss_pred             CccEEEEEcCCcccccCCCccccCHHHHHHHHHHHhcCCCcccccCCCCCcccccCCcEEe-ecCchhhhccc---CCCc
Confidence            99999999866555554   2 3333333322111  00              11223343 55778887754   4789


Q ss_pred             EEEEEeCCCChhhhhhhhHHHHHHHHhCCc--EEEEEEECCCchhHHHHHHhCCCCccceEEEEeCC--eEEEEEeCC-C
Q 018973          256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGT--VVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDG--QIRGRYVGS-G  330 (348)
Q Consensus       256 vvV~F~a~wC~~C~~~~p~l~~la~~~~~~--v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G--~~v~~~~G~-~  330 (348)
                      ++|+||++||++|+.+.|.|.++++.++++  +.++.+|++.+.     +++|+|.++||+++|.+|  +.+.++.|. +
T Consensus       270 ~lv~f~a~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~~~~-----~~~~~v~~~Pt~~~~~~~~~~~~~~~~G~~~  344 (361)
T 3uem_A          270 VFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE-----VEAVKVHSFPTLKFFPASADRTVIDYNGERT  344 (361)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTTCB-----CSSCCCCSSSEEEEECSSSSCCCEECCSCSS
T ss_pred             EEEEEecCcCHhHHHHHHHHHHHHHHhccCCcEEEEEEECCccc-----hhhcCCcccCeEEEEECCCCcceeEecCCCC
Confidence            999999999999999999999999999764  999999999876     578999999999999654  677889998 9


Q ss_pred             hHHHHHHHHHHhC
Q 018973          331 KGELIGEILRYQG  343 (348)
Q Consensus       331 ~~~L~~~l~~~~~  343 (348)
                      .++|.++|+++.+
T Consensus       345 ~~~l~~~l~~~~~  357 (361)
T 3uem_A          345 LDGFKKFLESGGQ  357 (361)
T ss_dssp             HHHHHHHHTTTSC
T ss_pred             HHHHHHHHHhcCC
Confidence            9999999987754

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.95  E-value=3.2e-27  Score=246.95  Aligned_cols=204  Identities=18%  Similarity=0.232  Sum_probs=165.3

Q ss_pred             CHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeec
Q 018973          126 SIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPHFSFYKS  204 (348)
Q Consensus       126 s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~  204 (348)
                      +.++|++.    .+++|+|+|||+||++|+.+.|.|+++++++.+ +.|+.||+++   ..+++++|||+++||++++++
T Consensus       446 ~~~~~~~~----~~~~vlv~F~a~wC~~c~~~~p~~~~~a~~~~~~v~~~~vd~~~---~~~~~~~~~v~~~Pt~~~~~~  518 (780)
T 3apo_A          446 GPQNFPAS----DKEPWLVDFFAPWSPPSRALLPELRKASTLLYGQLKVGTLDCTI---HEGLCNMYNIQAYPTTVVFNQ  518 (780)
T ss_dssp             CTTTSCTT----CCSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTT---CHHHHHHTTCCSSSEEEEEET
T ss_pred             CHHHHHHc----CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEeCCC---CHHHHHHcCCCcCCeEEEEcC
Confidence            44444433    578999999999999999999999999999965 9999999998   456999999999999999988


Q ss_pred             cccccccccC-CCCcccccccccCCCccceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhC
Q 018973          205 MEKIHEEEGI-GPDQLMGDVLYYGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMA  283 (348)
Q Consensus       205 g~~v~~~~G~-~~~~l~~~v~~~~~~~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~  283 (348)
                      |+. ..+.|. ..+.+...+.....  +.+..+ +.+++++++... ..++.++|.||+|||++|+++.|.|+++++.++
T Consensus       519 g~~-~~~~g~~~~~~l~~fi~~~~~--~~v~~l-~~~~f~~~v~~~-~~~~~~lv~F~ap~C~~c~~~~p~~~~lA~~~~  593 (780)
T 3apo_A          519 SSI-HEYEGHHSAEQILEFIEDLRN--PSVVSL-TPSTFNELVKQR-KHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLT  593 (780)
T ss_dssp             TEE-EEECSCSCHHHHHHHHHHHHS--CSEEEC-CHHHHHHHTTTC-CTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHT
T ss_pred             Cce-eeecCcccHHHHHHHHHhhcc--cceeec-CcccHHHHhhcc-CCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhh
Confidence            876 566663 34444443332221  345555 467899888653 135788999999999999999999999999998


Q ss_pred             CcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeE----EEEEeC-C-ChHHHHHHHHHHhCC
Q 018973          284 GTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQI----RGRYVG-S-GKGELIGEILRYQGV  344 (348)
Q Consensus       284 ~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~----v~~~~G-~-~~~~L~~~l~~~~~~  344 (348)
                      +++.|+.+|++.+..   ++++|+|.++||+++|+.|..    ...+.| . +.++|.+|+.+....
T Consensus       594 ~~v~~~~vd~~~~~~---l~~~~~v~~~Pti~~~~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~~~  657 (780)
T 3apo_A          594 GLINVGSVDCGQYHS---FCTQENVQRYPEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGLGFLPQ  657 (780)
T ss_dssp             TTSEEEEEETTTTHH---HHHHTTCCSSSEEEEECCCSSSCCSCEECCCSCCSHHHHHHHHHTTSCC
T ss_pred             CCeEEEEEECcchHH---HHHHcCCCCCCeEEEEcCCCcCccchhhcCCCCCCHHHHHHHHhhhccc
Confidence            889999999999887   999999999999999987643    345788 5 999999999987643

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=99.93  E-value=6.6e-26  Score=178.77  Aligned_cols=98  Identities=33%  Similarity=0.465  Sum_probs=90.7

Q ss_pred             CceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeE
Q 018973          120 RVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHF  199 (348)
Q Consensus       120 ~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~  199 (348)
                      .|.+|.+.++|++.|.++++++|+|+|||+||+||+.+.|.|++++++++++.|++||+|+   .++++++|+|+++||+
T Consensus         1 MV~~i~~~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~d~---~~~l~~~~~V~~~PT~   77 (105)
T 3zzx_A            1 MVYQVKDQEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMSDVVFLKVDVDE---CEDIAQDNQIACMPTF   77 (105)
T ss_dssp             CCEECCSHHHHHHHHHHTTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTEEEEEEETTT---CHHHHHHTTCCBSSEE
T ss_pred             CeEEeCCHHHHHHHHHhcCCCEEEEEEECCCCCCccCCCcchhhhhhccCCeEEEEEeccc---CHHHHHHcCCCeecEE
Confidence            3678999999999999888999999999999999999999999999999999999999999   5569999999999999


Q ss_pred             EEeeccccccccccCCCCccc
Q 018973          200 SFYKSMEKIHEEEGIGPDQLM  220 (348)
Q Consensus       200 ~~~~~g~~v~~~~G~~~~~l~  220 (348)
                      ++|++|+.+.++.|++.++|.
T Consensus        78 ~~~~~G~~v~~~~G~~~~~l~   98 (105)
T 3zzx_A           78 LFMKNGQKLDSLSGANYDKLL   98 (105)
T ss_dssp             EEEETTEEEEEEESCCHHHHH
T ss_pred             EEEECCEEEEEEeCcCHHHHH
Confidence            999999999999997655544

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=99.92  E-value=8.5e-24  Score=191.04  Aligned_cols=212  Identities=14%  Similarity=0.193  Sum_probs=151.0

Q ss_pred             CCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC----CcEEEEEeCCCchhHHHHHHHcCc
Q 018973          118 DERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN----DVEFILVMGDESEKTKELCEREKI  193 (348)
Q Consensus       118 ~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~----~v~f~~vd~d~~~~~~~l~~~~~V  193 (348)
                      ...+.++ +.++|++.+.+ .+++|+|+|||+||++|+.+.|.|++++++++    ++.|++||++... ..++|++|+|
T Consensus        11 ~~~v~~l-~~~~f~~~i~~-~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~-~~~l~~~~~v   87 (244)
T 3q6o_A           11 SDPLTLL-QADTVRGAVLG-SRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEET-NSAVCRDFNI   87 (244)
T ss_dssp             TSSSEEE-CTTTHHHHHSS-CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTT-THHHHHHTTC
T ss_pred             CCCceeC-ChhhHHHHHhh-CCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchh-hHHHHHHcCC
Confidence            4567777 78899988753 46999999999999999999999999999986    4999999995322 5679999999


Q ss_pred             CCCCeEEEeecccccc-----ccccCCCCcccccccccCCC-------ccceeecCChhhHHHHhhhcccCCcEEEEEEe
Q 018973          194 KKVPHFSFYKSMEKIH-----EEEGIGPDQLMGDVLYYGDS-------HSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVG  261 (348)
Q Consensus       194 ~~~Pt~~~~~~g~~v~-----~~~G~~~~~l~~~v~~~~~~-------~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~  261 (348)
                      +++||+++|++|+...     ++.|.+.+.+...+......       ..+-....+.++++.++...  ..+.+++.|.
T Consensus        88 ~~~Pt~~~~~~g~~~~~g~~~~~~g~~~~~l~~~i~~~l~~~~~~~p~~~p~l~~~~~~~l~~~~~~~--~~~~~al~f~  165 (244)
T 3q6o_A           88 PGFPTVRFFXAFTXNGSGAVFPVAGADVQTLRERLIDALESHHDTWPPACPPLEPAXLEEIDGFFARN--NEEYLALIFE  165 (244)
T ss_dssp             CSSSEEEEECTTCCSSSCEECCCTTCCHHHHHHHHHHHHHTCTTSCCTTSCCCSCCCHHHHHTHHHHC--CCSEEEEEEE
T ss_pred             CccCEEEEEeCCCcCCCCeeEecCCCCHHHHHHHHHHHHHhccccCCCCCCCcccccHHHHHHHhhcC--CCceEEEEEE
Confidence            9999999999865543     56666665555444322111       11122344567888887654  5778888888


Q ss_pred             CCCChhhhhhhhHHHHHHHHhC--CcEEEEEEECCCchhHHHHHHhCCCCccceEEEE-eCCeEEEEEeCC-ChHHHHHH
Q 018973          262 LKHCGPCVKVYPTVIKLSRQMA--GTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFI-RDGQIRGRYVGS-GKGELIGE  337 (348)
Q Consensus       262 a~wC~~C~~~~p~l~~la~~~~--~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~-~~G~~v~~~~G~-~~~~L~~~  337 (348)
                      ...|..       ..+++..+.  ..+.+..++-.+ ..   ++++|||+++||++++ ++|+......+. +.+.+..+
T Consensus       166 ~~~~~~-------~~~~~~d~~~~~~i~v~~~~~~~-~~---l~~~f~v~~~Pslvl~~~~g~~~~~~~~~~~r~~~~~~  234 (244)
T 3q6o_A          166 XGGSYL-------AREVALDLSQHKGVAVRRVLNTE-AN---VVRKFGVTDFPSCYLLFRNGSVSRVPVLMESRSFYTAY  234 (244)
T ss_dssp             CTTCCH-------HHHHHHHTTTCTTEEEEEEETTC-HH---HHHHHTCCCSSEEEEEETTSCEEECCCSSSSHHHHHHH
T ss_pred             ECCcch-------HHHHHHHhccCCceEEEEEeCch-HH---HHHHcCCCCCCeEEEEeCCCCeEeeccccccHHHHHHH
Confidence            876543       333333443  447777776543 33   9999999999999777 477766555555 77888888


Q ss_pred             HHHHhCCC
Q 018973          338 ILRYQGVR  345 (348)
Q Consensus       338 l~~~~~~~  345 (348)
                      |+++.|++
T Consensus       235 l~~~~~~~  242 (244)
T 3q6o_A          235 LQRLSGLT  242 (244)
T ss_dssp             HHTC----
T ss_pred             HHhCCCCC
Confidence            88887764

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=99.91  E-value=1.1e-23  Score=200.38  Aligned_cols=202  Identities=13%  Similarity=0.156  Sum_probs=160.4

Q ss_pred             CCCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhH-------HHHHHHHcC--CcEEEEEeCCCchhHHHH
Q 018973          117 RDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPF-------MVDLSRQCN--DVEFILVMGDESEKTKEL  187 (348)
Q Consensus       117 ~~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~-------l~~la~~~~--~v~f~~vd~d~~~~~~~l  187 (348)
                      ..+.|.++ +.++|++.+.  ++++|+|+|||+||+ |+.+.|.       |+++++++.  ++.|++||+++   .+++
T Consensus         9 ~~~~v~~l-~~~~f~~~i~--~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~~---~~~l   81 (350)
T 1sji_A            9 GKDRVVSL-TEKNFKQVLK--KYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKK---EAKL   81 (350)
T ss_dssp             CCCCCEEE-CHHHHHHHHT--TCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETTT---THHH
T ss_pred             CCCccEEC-CHHHHHHHHh--hCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhcCcEEEEEeCCC---CHHH
Confidence            33457776 8999999986  589999999999999 9999998       899999875  49999999999   5669


Q ss_pred             HHHcCcCCCCeEEEeeccccccccccC-CCCcccccccccCCCccceeecCChhhHHHHhh-hcccCCcEEEEEEeCCCC
Q 018973          188 CEREKIKKVPHFSFYKSMEKIHEEEGI-GPDQLMGDVLYYGDSHSAVVQLHSKEDVEKLID-DHKVDQKLIVLDVGLKHC  265 (348)
Q Consensus       188 ~~~~~V~~~Pt~~~~~~g~~v~~~~G~-~~~~l~~~v~~~~~~~~~v~~~~s~~~~~~~l~-~~~~~~k~vvV~F~a~wC  265 (348)
                      |++|+|+++||+++|++|+ +.++.|. ..+.+...+...  ....+..+.+.+++++++. .    ++.++|.|+++||
T Consensus        82 ~~~~~v~~~Pt~~~~~~g~-~~~~~G~~~~~~l~~~i~~~--~~~~~~~l~~~~~~~~~~~~~----~~~~vv~ff~~~~  154 (350)
T 1sji_A           82 AKKLGFDEEGSLYVLKGDR-TIEFDGEFAADVLVEFLLDL--IEDPVEIINSKLEVQAFERIE----DQIKLIGFFKSEE  154 (350)
T ss_dssp             HHHHTCCSTTEEEEEETTE-EEEECSCCCHHHHHHHHHTT--SSCSEEECCSHHHHHHHHHCC----SSCEEEEECSCTT
T ss_pred             HHhcCCCccceEEEEECCc-EEEecCCCCHHHHHHHHHHh--cCCcceeccchHHHHHHhccC----CCcEEEEEECCCC
Confidence            9999999999999999998 4567774 444555433332  2345677778888998876 4    3567888999987


Q ss_pred             hhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeC-CeEEEEEeCC--ChHHHHHHHHHHh
Q 018973          266 GPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRD-GQIRGRYVGS--GKGELIGEILRYQ  342 (348)
Q Consensus       266 ~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~-G~~v~~~~G~--~~~~L~~~l~~~~  342 (348)
                      .+.   .+.+.+++..+.+++.|+.++   +++   ++++|++. .|++++|+. ++....+.|.  +.++|.+||.+..
T Consensus       155 ~~~---~~~~~~~A~~~~~~~~f~~~~---~~~---~~~~~~v~-~p~i~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~  224 (350)
T 1sji_A          155 SEY---YKAFEEAAEHFQPYIKFFATF---DKG---VAKKLSLK-MNEVDFYEPFMDEPIAIPDKPYTEEELVEFVKEHQ  224 (350)
T ss_dssp             SHH---HHHHHHHHHHTTTTSEEEEEC---CHH---HHHHHTCC-TTCEEEECTTCSSCEECSSSSCCHHHHHHHHHHHC
T ss_pred             cHH---HHHHHHHHHhhccCcEEEEEC---CHH---HHHHcCCC-CCcEEEEeCCCCCceecCCCCCCHHHHHHHHHHcC
Confidence            654   467899999998889999874   333   99999999 999999975 3333456674  8999999999864

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1.6e-23  Score=195.15  Aligned_cols=212  Identities=16%  Similarity=0.197  Sum_probs=157.0

Q ss_pred             CCCCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcC
Q 018973          116 PRDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIK  194 (348)
Q Consensus       116 ~~~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~  194 (348)
                      +.++.|+++ +.++|++.+.+ .+++|+|+|||+||++|+.+.|.|+++++++++ +.|+.||+|... ..++|++|+|+
T Consensus        14 ~~~~~vv~l-t~~~f~~~i~~-~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~d~~~-~~~l~~~~~I~   90 (298)
T 3ed3_A           14 DSDPHISEL-TPKSFDKAIHN-TNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNK-NKALCAKYDVN   90 (298)
T ss_dssp             SSCTTCEEC-CHHHHHHHHTS-SSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTSTT-THHHHHHTTCC
T ss_pred             CCCCCeEEe-CHHHHHHHHHh-CCCeEEEEEECCCCHHHHHHHHHHHHHHHHccCCcEEEEEEccCcc-CHHHHHhCCCC
Confidence            445567887 89999999953 588999999999999999999999999999987 999999998432 46799999999


Q ss_pred             CCCeEEEeeccccc-----------------cccccCC-CCcccccccccCCCccceeecCChhhHHHHhhhcccCCcEE
Q 018973          195 KVPHFSFYKSMEKI-----------------HEEEGIG-PDQLMGDVLYYGDSHSAVVQLHSKEDVEKLIDDHKVDQKLI  256 (348)
Q Consensus       195 ~~Pt~~~~~~g~~v-----------------~~~~G~~-~~~l~~~v~~~~~~~~~v~~~~s~~~~~~~l~~~~~~~k~v  256 (348)
                      ++||+++|++|+.+                 ..+.|.. .+.+...+.  ......+..+.+.+++++++...   +++.
T Consensus        91 ~~Pt~~~~~~g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~--~~~~~~v~~i~~~~~l~~~l~~~---~~~~  165 (298)
T 3ed3_A           91 GFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSL--SRIRSYVKKFVRIDTLGSLLRKS---PKLS  165 (298)
T ss_dssp             BSSEEEEEECCCC-------------CCCEEEECCSCCSHHHHHHHHH--TTCCCCEEECSCGGGHHHHHTSC---SSEE
T ss_pred             ccceEEEEECCceeecccccccccccccccceeecCCcCHHHHHHHHH--HhcccccEEcCCHHHHHHHHhcC---CceE
Confidence            99999999999843                 3444422 233332222  22345677788888999988753   5777


Q ss_pred             EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHH--HhCC------------------CCccceEEE
Q 018973          257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFL--RDMN------------------VVEVPTFLF  316 (348)
Q Consensus       257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~--~~~~------------------V~~~PTl~~  316 (348)
                      ++.|...     ....+.|.+++..+.+++.|+.++..+...   +.  ++|+                  ....|++++
T Consensus       166 vi~fs~~-----~~~~~~f~~~A~~~~~~~~F~~v~~~~~a~---~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~P~lv~  237 (298)
T 3ed3_A          166 VVLFSKQ-----DKISPVYKSIALDWLGKFDFYSISNKKLKQ---LTDMNPTYEKTPEIFKYLQKVIPEQRQSDKSKLVV  237 (298)
T ss_dssp             EEEEESS-----SSCCHHHHHHHHHTBTTEEEEEEEGGGCCC---CCTTCTTSTTCHHHHHHHHHHHHHHTTCSSCEEEE
T ss_pred             EEEEcCC-----CcchHHHHHHHHHhhcCcEEEEEcchHhhh---hhhhhhhcccCcchhhhhhcccccccccCCCeEEE
Confidence            7777432     345578999999998889999998553221   11  2222                  267999999


Q ss_pred             EeC-CeEEEEEeC-C-ChHHHHHHHHHHhC
Q 018973          317 IRD-GQIRGRYVG-S-GKGELIGEILRYQG  343 (348)
Q Consensus       317 ~~~-G~~v~~~~G-~-~~~~L~~~l~~~~~  343 (348)
                      |+. ++....+.| . +.++|.+||.+..+
T Consensus       238 ~~~~~~~~~~y~g~~~~~~~i~~fi~~~~~  267 (298)
T 3ed3_A          238 FDADKDKFWEYEGNSINKNDISKFLRDTFS  267 (298)
T ss_dssp             EETTTTEEEECCCSSCCHHHHHHHHHHHHT
T ss_pred             EcCCCCceEEeccccCCHHHHHHHHHhhcC
Confidence            974 444556675 4 99999999996543

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=99.91  E-value=3.9e-24  Score=204.86  Aligned_cols=204  Identities=11%  Similarity=0.142  Sum_probs=159.3

Q ss_pred             CCCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhh------hHHHHHHHHcC--CcEEEEEeCCCchhHHHHH
Q 018973          117 RDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIY------PFMVDLSRQCN--DVEFILVMGDESEKTKELC  188 (348)
Q Consensus       117 ~~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~------p~l~~la~~~~--~v~f~~vd~d~~~~~~~l~  188 (348)
                      ..+.|.++ |.++|++.+.  .+++|+|+|||+||++|+...      |.++++++++.  ++.|++||+++   .+++|
T Consensus        11 ~~~~v~~l-t~~~f~~~i~--~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~---~~~l~   84 (367)
T 3us3_A           11 GVDRVINV-NAKNYKNVFK--KYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEK---DAAVA   84 (367)
T ss_dssp             CCCCCEEC-CTTTHHHHHH--HCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTT---THHHH
T ss_pred             CCCccEEC-CHHHHHHHHh--hCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCcc---cHHHH
Confidence            33457776 8999999997  589999999999999974333      68999998875  49999999999   56799


Q ss_pred             HHcCcCCCCeEEEeecccccccccc-CCCCcccccccccCCCccceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChh
Q 018973          189 EREKIKKVPHFSFYKSMEKIHEEEG-IGPDQLMGDVLYYGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGP  267 (348)
Q Consensus       189 ~~~~V~~~Pt~~~~~~g~~v~~~~G-~~~~~l~~~v~~~~~~~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~  267 (348)
                      ++|||+++||+++|++|+.+ ++.| ...+.+...+...  ....+..+.+.+++++++..   .++.++|.|+.+||..
T Consensus        85 ~~~~V~~~PTl~~f~~G~~~-~y~G~~~~~~i~~~i~~~--~~~~v~~i~~~~~~~~~~~~---~~~~~vv~ff~~~~~~  158 (367)
T 3us3_A           85 KKLGLTEEDSIYVFKEDEVI-EYDGEFSADTLVEFLLDV--LEDPVELIEGERELQAFENI---EDEIKLIGYFKNKDSE  158 (367)
T ss_dssp             HHHTCCSTTEEEEEETTEEE-ECCSCCSHHHHHHHHHHH--HSCSEEECCSHHHHHHHHHC---CSSCEEEEECSCTTCH
T ss_pred             HHcCCCcCceEEEEECCcEE-EeCCCCCHHHHHHHHHHh--cCCCcEEcCCHHHHHHHhcc---CCCcEEEEEECCCCch
Confidence            99999999999999999886 5666 4455555444332  23457778888999998862   2477889999998765


Q ss_pred             hhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCC-eEEEEEeC-C-ChHHHHHHHHHHh
Q 018973          268 CVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDG-QIRGRYVG-S-GKGELIGEILRYQ  342 (348)
Q Consensus       268 C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G-~~v~~~~G-~-~~~~L~~~l~~~~  342 (348)
                         ..+.|.+++..+.+.+.|+.++.   .+   ++++|++.. |++++|+.+ +....|.| . +.++|.+||....
T Consensus       159 ---~~~~f~~~A~~~~~~~~F~~~~~---~~---~~~~~~v~~-p~i~lf~~~~~~~~~y~g~~~~~~~l~~fi~~~~  226 (367)
T 3us3_A          159 ---HYKAFKEAAEEFHPYIPFFATFD---SK---VAKKLTLKL-NEIDFYEAFMEEPVTIPDKPNSEEEIVNFVEEHR  226 (367)
T ss_dssp             ---HHHHHHHHHHHHTTTSCEEEECC---HH---HHHHHTCCT-TCEEEECTTCSSCEECSSSSCCHHHHHHHHHHTC
T ss_pred             ---HHHHHHHHHHhhcCCcEEEEECC---HH---HHHHcCCCC-CeEEEEcCCCCCCeecCCCCCCHHHHHHHHHHcC
Confidence               45568999999987899998753   33   899999985 999999863 22345567 3 8999999998864

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=99.90  E-value=3.3e-23  Score=163.23  Aligned_cols=103  Identities=31%  Similarity=0.590  Sum_probs=96.1

Q ss_pred             eeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccc
Q 018973          233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVP  312 (348)
Q Consensus       233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~P  312 (348)
                      ++++.+.++|++.+.+.  .+++++|+|||+||++|+.+.|.+.++++.++ ++.|++||++++++   ++++|+|+++|
T Consensus         2 V~~i~~~~~f~~~l~~~--~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~-~~~~~~vd~d~~~~---l~~~~~V~~~P   75 (105)
T 3zzx_A            2 VYQVKDQEDFTKQLNEA--GNKLVVIDFYATWCGPCKMIAPKLEELSQSMS-DVVFLKVDVDECED---IAQDNQIACMP   75 (105)
T ss_dssp             CEECCSHHHHHHHHHHT--TTSEEEEEEECTTCHHHHHHHHHHHHHHHHCT-TEEEEEEETTTCHH---HHHHTTCCBSS
T ss_pred             eEEeCCHHHHHHHHHhc--CCCEEEEEEECCCCCCccCCCcchhhhhhccC-CeEEEEEecccCHH---HHHHcCCCeec
Confidence            56788999999999865  57999999999999999999999999999986 49999999999988   99999999999


Q ss_pred             eEEEEeCCeEEEEEeCCChHHHHHHHHHH
Q 018973          313 TFLFIRDGQIRGRYVGSGKGELIGEILRY  341 (348)
Q Consensus       313 Tl~~~~~G~~v~~~~G~~~~~L~~~l~~~  341 (348)
                      |+++|++|+++.++.|.+.++|.++|+++
T Consensus        76 T~~~~~~G~~v~~~~G~~~~~l~~~i~k~  104 (105)
T 3zzx_A           76 TFLFMKNGQKLDSLSGANYDKLLELVEKN  104 (105)
T ss_dssp             EEEEEETTEEEEEEESCCHHHHHHHHHHH
T ss_pred             EEEEEECCEEEEEEeCcCHHHHHHHHHhc
Confidence            99999999999999999999999999886

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=99.90  E-value=1.2e-23  Score=175.08  Aligned_cols=87  Identities=14%  Similarity=0.178  Sum_probs=80.4

Q ss_pred             CceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCe
Q 018973          120 RVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPH  198 (348)
Q Consensus       120 ~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt  198 (348)
                      .+..+.|.++|++.+.+..+++|||+|||+|||||+.+.|.|++++++|++ +.|++||+|+.+   +++++|+|+++||
T Consensus        22 mv~~l~t~~~f~~~v~~~~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~v~f~kVDVDe~~---e~a~~y~V~siPT   98 (160)
T 2av4_A           22 MLQHLNSGWAVDQAIVNEDERLVCIRFGHDYDPDCMKMDELLYKVADDIKNFCVIYLVDITEVP---DFNTMYELYDPVS   98 (160)
T ss_dssp             CCEECCSHHHHHHHHHHCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCC---TTTTTTTCCSSEE
T ss_pred             hhhccCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCCcEEEEEECCCCH---HHHHHcCCCCCCE
Confidence            488999999999988755789999999999999999999999999999987 999999999955   4999999999999


Q ss_pred             EEEeecccccc
Q 018973          199 FSFYKSMEKIH  209 (348)
Q Consensus       199 ~~~~~~g~~v~  209 (348)
                      |+||++|+.+.
T Consensus        99 ~~fFk~G~~v~  109 (160)
T 2av4_A           99 VMFFYRNKHMM  109 (160)
T ss_dssp             EEEEETTEEEE
T ss_pred             EEEEECCEEEE
Confidence            99999999983

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.90  E-value=4.5e-23  Score=203.93  Aligned_cols=202  Identities=15%  Similarity=0.238  Sum_probs=160.9

Q ss_pred             CceEecCHHHHHHHHHhc-CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCC
Q 018973          120 RVKKVHSIEEFDEALRLA-KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVP  197 (348)
Q Consensus       120 ~v~~v~s~~~f~~~l~~~-~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~P  197 (348)
                      .|..+ |.++|++.+.+. .+++|+|+|||+||++|+.+.|.|+++++++++ +.|++||+++   .+++|++|||+++|
T Consensus         2 ~v~~l-~~~~f~~~i~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~---~~~l~~~~~v~~~P   77 (481)
T 3f8u_A            2 DVLEL-TDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTA---NTNTCNKYGVSGYP   77 (481)
T ss_dssp             CCEEE-CTTTHHHHTTCCSSSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCCEEEEETTT---CHHHHHHTTCCEES
T ss_pred             ceEEe-cHHHHHHHHHhCCCCCeEEEEEECCCCHHHHHhHHHHHHHHHHhcCceEEEEEECCC---CHHHHHhcCCCCCC
Confidence            35666 889999999632 239999999999999999999999999999988 9999999999   56699999999999


Q ss_pred             eEEEeeccccccccccC-CCCcccccccccCCCccceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHH
Q 018973          198 HFSFYKSMEKIHEEEGI-GPDQLMGDVLYYGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVI  276 (348)
Q Consensus       198 t~~~~~~g~~v~~~~G~-~~~~l~~~v~~~~~~~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~  276 (348)
                      |+++|++|+.+.++.|. ..+.+...+...  ....+..+.+.+++++++..    ++.++|.|+.++|..+.   ..+.
T Consensus        78 tl~~~~~g~~~~~~~G~~~~~~l~~~~~~~--~~~~~~~i~~~~~~~~~~~~----~~~~vv~~~~~~~~~~~---~~f~  148 (481)
T 3f8u_A           78 TLKIFRDGEEAGAYDGPRTADGIVSHLKKQ--AGPASVPLRTEEEFKKFISD----KDASIVGFFDDSFSEAH---SEFL  148 (481)
T ss_dssp             EEEEEETTEEEEECCSCSSHHHHHHHHHHH--TSCSEEEECSHHHHHHHTTS----SSCEEEEEESCTTCHHH---HHHH
T ss_pred             EEEEEeCCceeeeecCccCHHHHHHHHHhh--cccCceecCCHHHHHHHHhc----CCcEEEEEECCCccchH---HHHH
Confidence            99999999988889884 344555433332  24557778888999988874    57788888988877664   4588


Q ss_pred             HHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEe--------CCeEEEEEe-CC-ChHHHHHHHHHHh
Q 018973          277 KLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIR--------DGQIRGRYV-GS-GKGELIGEILRYQ  342 (348)
Q Consensus       277 ~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~--------~G~~v~~~~-G~-~~~~L~~~l~~~~  342 (348)
                      +++..+.+++.|+.++   .++   ++++|++...| +++|+        ++. ...+. |. +.++|.+||....
T Consensus       149 ~~a~~~~~~~~F~~~~---~~~---~~~~~~v~~~~-i~~~~p~~~~~~~~~~-~~~y~~~~~~~~~l~~fi~~~~  216 (481)
T 3f8u_A          149 KAASNLRDNYRFAHTN---VES---LVNEYDDNGEG-IILFRPSHLTNKFEDK-TVAYTEQKMTSGKIKKFIQENI  216 (481)
T ss_dssp             HHHHHHTTTSCEEEEC---CHH---HHHHHCSSSEE-EEEECCGGGCBTTBCS-EEECCCSSCCHHHHHHHHHHHT
T ss_pred             HHHHHhccCceEEEEC---CHH---HHHHhCCCCCc-EEEEecccccCccCCc-ccccCCCCCCHHHHHHHHHHhC
Confidence            9999998889998774   333   89999998766 77776        333 33455 65 8999999998874

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=99.89  E-value=9e-23  Score=196.37  Aligned_cols=201  Identities=15%  Similarity=0.198  Sum_probs=137.0

Q ss_pred             CCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHc------CC-cEEEEEeCCCchhHHHHHHHc
Q 018973          119 ERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQC------ND-VEFILVMGDESEKTKELCERE  191 (348)
Q Consensus       119 ~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~------~~-v~f~~vd~d~~~~~~~l~~~~  191 (348)
                      +.|..+ +.++|++++.  ++++|+|+|||+||++|+.+.|.|+++++++      .+ +.|++||+++   ..++|++|
T Consensus         5 ~~v~~l-~~~~f~~~~~--~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~---~~~l~~~~   78 (382)
T 2r2j_A            5 SEITSL-DTENIDEILN--NADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQ---HSDIAQRY   78 (382)
T ss_dssp             ---CBC-CTTTHHHHHH--HCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTT---CHHHHHHT
T ss_pred             CceEEC-CHHHHHHHHh--cCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCc---cHHHHHhc
Confidence            345665 7899999887  5799999999999999999999999999987      23 9999999998   56699999


Q ss_pred             CcCCCCeEEEeecccccc-ccccC-CCCcccccccccCCCccceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhh
Q 018973          192 KIKKVPHFSFYKSMEKIH-EEEGI-GPDQLMGDVLYYGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCV  269 (348)
Q Consensus       192 ~V~~~Pt~~~~~~g~~v~-~~~G~-~~~~l~~~v~~~~~~~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~  269 (348)
                      +|+++||+++|++|+.+. .+.|. ..+.+...+....  ...+..+.+.++++. +.    .++.++|.|+++++.+. 
T Consensus        79 ~v~~~Pt~~~f~~G~~~~~~~~G~~~~~~l~~~i~~~~--~~~v~~l~~~~~l~~-l~----~~~~~~v~ff~~~~~~~-  150 (382)
T 2r2j_A           79 RISKYPTLKLFRNGMMMKREYRGQRSVKALADYIRQQK--SDPIQEIRDLAEITT-LD----RSKRNIIGYFEQKDSDN-  150 (382)
T ss_dssp             TCCEESEEEEEETTEEEEEECCSCCSHHHHHHHHHHHH--SCCCEEC-----------------CCEEEEEESCSSSHH-
T ss_pred             CCCcCCEEEEEeCCcEeeeeecCcchHHHHHHHHHHhc--cCCceecCCHHHHHH-hc----CCCCEEEEEECCCCChh-
Confidence            999999999999999887 47774 3455554443322  234556666667776 43    35678888888877664 


Q ss_pred             hhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCC--eEEEEEeCC--ChHHHHHHHHHHhC
Q 018973          270 KVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDG--QIRGRYVGS--GKGELIGEILRYQG  343 (348)
Q Consensus       270 ~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G--~~v~~~~G~--~~~~L~~~l~~~~~  343 (348)
                        .+.|.+++..+.+++.|+....    +   +++++++.+.| +++...|  .....|.|.  +.++|.+||.+..-
T Consensus       151 --~~~f~~~A~~~~~~~~F~~~~~----~---~~~~~~v~~~p-i~~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~~  218 (382)
T 2r2j_A          151 --YRVFERVANILHDDCAFLSAFG----D---VSKPERYSGDN-IIYKPPGHSAPDMVYLGAMTNFDVTYNWIQDKCV  218 (382)
T ss_dssp             --HHHHHHHHHHHTTTCEEEEEES----C---C--------CE-EEEECSSSSSCCEECCSCTTCHHHHHHHHHHHHS
T ss_pred             --HHHHHHHHHHhhccceEEEEeh----h---hHHhhCCCCCc-eEECCCCCCCcCcccCCCCCCHHHHHHHHHhccc
Confidence              4468999999988888877765    2   56788999999 6555542  223455665  78999999998643

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=99.87  E-value=8.6e-22  Score=163.88  Aligned_cols=105  Identities=16%  Similarity=0.204  Sum_probs=95.9

Q ss_pred             eeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccc
Q 018973          233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVP  312 (348)
Q Consensus       233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~P  312 (348)
                      +..+.+.++|++.+...  .++++||+|||+||+||+.+.|.|+++++++.+++.|++||+|++++   ++++|+|.++|
T Consensus        23 v~~l~t~~~f~~~v~~~--~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~v~f~kVDVDe~~e---~a~~y~V~siP   97 (160)
T 2av4_A           23 LQHLNSGWAVDQAIVNE--DERLVCIRFGHDYDPDCMKMDELLYKVADDIKNFCVIYLVDITEVPD---FNTMYELYDPV   97 (160)
T ss_dssp             CEECCSHHHHHHHHHHC--SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCT---TTTTTTCCSSE
T ss_pred             hhccCCHHHHHHHHHhc--CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCCcEEEEEECCCCHH---HHHHcCCCCCC
Confidence            66788999999887642  47899999999999999999999999999998889999999999998   99999999999


Q ss_pred             eEEEEeCCeEE--E-------EEeCC-C-hHHHHHHHHHHh
Q 018973          313 TFLFIRDGQIR--G-------RYVGS-G-KGELIGEILRYQ  342 (348)
Q Consensus       313 Tl~~~~~G~~v--~-------~~~G~-~-~~~L~~~l~~~~  342 (348)
                      |+++|++|+.+  .       ++.|. + +++|+++|++++
T Consensus        98 T~~fFk~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~  138 (160)
T 2av4_A           98 SVMFFYRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIF  138 (160)
T ss_dssp             EEEEEETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHH
T ss_pred             EEEEEECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHH
Confidence            99999999998  5       89999 5 999999998874

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=99.87  E-value=3.6e-21  Score=191.67  Aligned_cols=211  Identities=11%  Similarity=0.173  Sum_probs=145.3

Q ss_pred             CCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC----cEEEEEeCCCchhHHHHHHHcCc
Q 018973          118 DERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND----VEFILVMGDESEKTKELCEREKI  193 (348)
Q Consensus       118 ~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~----v~f~~vd~d~~~~~~~l~~~~~V  193 (348)
                      ...|.++ +.++|++.+.+ .+++|+|+|||+||++|+.+.|.|+++++++.+    +.|++||+++.. ..++|++|+|
T Consensus        11 ~~~V~~L-t~~~f~~~v~~-~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~-~~~l~~~~~V   87 (519)
T 3t58_A           11 SDPLTLL-DADSVRPTVLG-SSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEET-NSAVCREFNI   87 (519)
T ss_dssp             TSSSEEE-CTTTHHHHHSS-CSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGG-GHHHHHHTTC
T ss_pred             CCCcEEC-ChHHHHHHHHh-CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccc-cHHHHHHcCC
Confidence            4467777 78899988753 579999999999999999999999999999864    999999997532 5789999999


Q ss_pred             CCCCeEEEeeccc----ccccccc-CCCCcccccccccCCC-------ccceeecCChhhHHHHhhhcccCCcEEEEEEe
Q 018973          194 KKVPHFSFYKSME----KIHEEEG-IGPDQLMGDVLYYGDS-------HSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVG  261 (348)
Q Consensus       194 ~~~Pt~~~~~~g~----~v~~~~G-~~~~~l~~~v~~~~~~-------~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~  261 (348)
                      +++||+++|++|+    .+....| .+.+.+...+......       ..+-....+.++++.++...  ..++++|.|.
T Consensus        88 ~~~PTl~~f~~g~~~G~~~~~~~g~~~~~~L~~~l~~~l~~~~~~~P~~~p~l~~it~~~l~~~l~~~--~~~~vallF~  165 (519)
T 3t58_A           88 AGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESHRDTWPPACPPLEPAKLNDIDGFFTRN--KADYLALVFE  165 (519)
T ss_dssp             CSBSEEEEECTTCCSCCCEEECCSSCCHHHHHHHHHHHHTTCCSCCCTTCCCCSBCCHHHHTTGGGSC--CCSEEEEEEE
T ss_pred             cccCEEEEEcCcccCCCceeEecCCCCHHHHHHHHHHHHhhccccCCCCCCccCcCCHHHHHHHhccC--CCCeEEEEec
Confidence            9999999998543    3344444 4444444433221111       11122334567787777764  5778888888


Q ss_pred             CCCChhhhhhhhHHHHHHHHhC--CcEEEEEEECCCchhHHHHHHhCCCCccceEEEEe-CCeEEEEEeCC-ChHHHHHH
Q 018973          262 LKHCGPCVKVYPTVIKLSRQMA--GTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIR-DGQIRGRYVGS-GKGELIGE  337 (348)
Q Consensus       262 a~wC~~C~~~~p~l~~la~~~~--~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~-~G~~v~~~~G~-~~~~L~~~  337 (348)
                      ...       .....+++..+.  ..+.+..++-+ ..+   ++++|||+.+|+++++. +|+....-... ....+..+
T Consensus       166 ~~~-------s~~~~~~~ldl~~~~~v~v~~v~~~-~~~---l~~kfgV~~~Pslvl~~~nGk~~~~~v~~~~r~~~~~~  234 (519)
T 3t58_A          166 RED-------SYLGREVTLDLSQYHAVAVRRVLNT-ESD---LVNKFGVTDFPSCYLLLRNGSVSRVPVLVESRSFYTSY  234 (519)
T ss_dssp             CTT-------CCHHHHHHHHTTTCTTEEEEEEETT-CHH---HHHHHTCCCSSEEEEEETTSCEEECCCSSCSHHHHHHH
T ss_pred             CCc-------hHHHHHHHHHhhccCCeeEEEecCc-hHH---HHHHcCCCCCCeEEEEeCCCceeecccccccHHHHHHH
Confidence            764       224556666654  34777666544 344   99999999999998885 55543332333 45556666


Q ss_pred             HHHHhCC
Q 018973          338 ILRYQGV  344 (348)
Q Consensus       338 l~~~~~~  344 (348)
                      |+++.++
T Consensus       235 l~~l~~~  241 (519)
T 3t58_A          235 LRGLPGL  241 (519)
T ss_dssp             HTTSTTC
T ss_pred             HHHccCC
Confidence            6655444

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=99.85  E-value=4e-21  Score=157.19  Aligned_cols=99  Identities=13%  Similarity=0.201  Sum_probs=91.8

Q ss_pred             ChhhHHHHhhhcccCCcEEEEEEeCCCC--hhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEE
Q 018973          238 SKEDVEKLIDDHKVDQKLIVLDVGLKHC--GPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL  315 (348)
Q Consensus       238 s~~~~~~~l~~~~~~~k~vvV~F~a~wC--~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~  315 (348)
                      +.++|++.+..   .+++++|+||++||  ++|+.+.|.+++++++|.++++|++||+|++++   ++.+|+|.++||++
T Consensus        21 t~~~F~~~v~~---~~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~v~~~KVdvDe~~~---la~~ygV~siPTli   94 (137)
T 2qsi_A           21 DEATVDDFIAH---SGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGRLVAAEVAAEAERG---LMARFGVAVCPSLA   94 (137)
T ss_dssp             CTTTHHHHHHT---SSSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTTEEEEEECGGGHHH---HHHHHTCCSSSEEE
T ss_pred             CHhHHHHHHhc---CCCcEEEEEeCCccCCCchhhHHhHHHHHHHHccCCcEEEEEECCCCHH---HHHHcCCccCCEEE
Confidence            45889888864   35699999999999  999999999999999998899999999999987   99999999999999


Q ss_pred             EEeCCeEEEEEeCC-ChHHHHHHHHHHh
Q 018973          316 FIRDGQIRGRYVGS-GKGELIGEILRYQ  342 (348)
Q Consensus       316 ~~~~G~~v~~~~G~-~~~~L~~~l~~~~  342 (348)
                      +|++|+.+.+..|. +.++|.++|++++
T Consensus        95 lFkdG~~v~~~vG~~~k~~l~~~l~~~l  122 (137)
T 2qsi_A           95 VVQPERTLGVIAKIQDWSSYLAQIGAML  122 (137)
T ss_dssp             EEECCEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEECCEEEEEEeCCCCHHHHHHHHHHHh
Confidence            99999999999999 8999999998875

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=99.84  E-value=2.2e-21  Score=155.93  Aligned_cols=92  Identities=13%  Similarity=0.137  Sum_probs=82.3

Q ss_pred             CCCceEecCHHHHHHHHHhcC-CCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCC
Q 018973          118 DERVKKVHSIEEFDEALRLAK-NKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKV  196 (348)
Q Consensus       118 ~~~v~~v~s~~~f~~~l~~~~-~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~  196 (348)
                      .+.+.+| |.++|.+.+.+++ +++|+|+|||+||+||+.+.|.|++++++|+++.|++||+|+.      +++|+|+++
T Consensus         2 ~G~v~~i-t~~~f~~~v~~~~~~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~~v~f~kvd~d~~------~~~~~v~~~   74 (118)
T 3evi_A            2 FGELREI-SGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPETKFVKAIVNSC------IQHYHDNCL   74 (118)
T ss_dssp             CCSCEEC-CGGGHHHHTTTCCTTCEEEEEEECTTSHHHHHHHHHHHHHHHHCTTSEEEEEEGGGT------STTCCGGGC
T ss_pred             CcceEEe-CHHHHHHHHHhcCCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCCEEEEEEhHHh------HHHCCCCCC
Confidence            4678888 7899998876543 5699999999999999999999999999999999999999983      579999999


Q ss_pred             CeEEEeeccccccccccCCC
Q 018973          197 PHFSFYKSMEKIHEEEGIGP  216 (348)
Q Consensus       197 Pt~~~~~~g~~v~~~~G~~~  216 (348)
                      ||+++|++|+.++++.|...
T Consensus        75 PT~~~fk~G~~v~~~~G~~~   94 (118)
T 3evi_A           75 PTIFVYKNGQIEAKFIGIIE   94 (118)
T ss_dssp             SEEEEEETTEEEEEEESTTT
T ss_pred             CEEEEEECCEEEEEEeChhh
Confidence            99999999999999999653

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=99.84  E-value=3.7e-21  Score=157.38  Aligned_cols=91  Identities=13%  Similarity=0.147  Sum_probs=81.8

Q ss_pred             ceEecCHHHHHHHHHhcCCCEEEEEEeCCCC--HHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCC
Q 018973          121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRS--LDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVP  197 (348)
Q Consensus       121 v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC--~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~P  197 (348)
                      ..++ |.++|++.+.+ .+++|||+|||+||  +||+.+.|.|++++++|.+ +.|++||+|+   .++++.+|||+++|
T Consensus        17 ~~~v-t~~~F~~~v~~-~~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~v~~~KVdvDe---~~~la~~ygV~siP   91 (137)
T 2qsi_A           17 PTLV-DEATVDDFIAH-SGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGRLVAAEVAAEA---ERGLMARFGVAVCP   91 (137)
T ss_dssp             CEEE-CTTTHHHHHHT-SSSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTTEEEEEECGGG---HHHHHHHHTCCSSS
T ss_pred             Cccc-CHhHHHHHHhc-CCCcEEEEEeCCccCCCchhhHHhHHHHHHHHccCCcEEEEEECCC---CHHHHHHcCCccCC
Confidence            3466 77999998863 34599999999999  9999999999999999975 9999999999   67799999999999


Q ss_pred             eEEEeeccccccccccCCC
Q 018973          198 HFSFYKSMEKIHEEEGIGP  216 (348)
Q Consensus       198 t~~~~~~g~~v~~~~G~~~  216 (348)
                      |+++|++|+.+++..|...
T Consensus        92 TlilFkdG~~v~~~vG~~~  110 (137)
T 2qsi_A           92 SLAVVQPERTLGVIAKIQD  110 (137)
T ss_dssp             EEEEEECCEEEEEEESCCC
T ss_pred             EEEEEECCEEEEEEeCCCC
Confidence            9999999999999999654

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=99.84  E-value=6.9e-21  Score=149.36  Aligned_cols=96  Identities=23%  Similarity=0.325  Sum_probs=87.3

Q ss_pred             CceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeE
Q 018973          120 RVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHF  199 (348)
Q Consensus       120 ~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~  199 (348)
                      .+.++.+.++|++.+.+.++++++|+||++||++|+.+.|.|++++++++++.|+.||+|+   .++++++|+|+++||+
T Consensus         2 ~v~~i~~~~~~~~~~~~~~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~vd~~~---~~~~~~~~~v~~~Pt~   78 (107)
T 1gh2_A            2 GVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQ---CQGTAATNNISATPTF   78 (107)
T ss_dssp             CEEEECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCTTSEEEEEETTT---SHHHHHHTTCCSSSEE
T ss_pred             ceEEecCHHHHHHHHHhCCCCEEEEEEECCCChhhHHHHHHHHHHHHHCCCcEEEEEECcc---CHHHHHhcCCCcccEE
Confidence            4788999999999997667899999999999999999999999999999889999999998   4569999999999999


Q ss_pred             EEeeccccccccccCCCCc
Q 018973          200 SFYKSMEKIHEEEGIGPDQ  218 (348)
Q Consensus       200 ~~~~~g~~v~~~~G~~~~~  218 (348)
                      ++|++|+.+.++.|...+.
T Consensus        79 ~~~~~G~~~~~~~G~~~~~   97 (107)
T 1gh2_A           79 QFFRNKVRIDQYQGADAVG   97 (107)
T ss_dssp             EEEETTEEEEEEESSCHHH
T ss_pred             EEEECCeEEEEEeCCCHHH
Confidence            9999999999888865443

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=99.84  E-value=4.6e-21  Score=153.19  Aligned_cols=97  Identities=35%  Similarity=0.539  Sum_probs=87.0

Q ss_pred             CceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeE
Q 018973          120 RVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHF  199 (348)
Q Consensus       120 ~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~  199 (348)
                      ......+.++|++++++.++++++|+|||+||++|+.+.|.|++++++++++.|+.||+|+   ..+++++|+|+++||+
T Consensus        12 ~~~~~~t~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~---~~~l~~~~~v~~~Pt~   88 (116)
T 3qfa_C           12 SVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDD---CQDVASECEVKSMPTF   88 (116)
T ss_dssp             CCBCCCCHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTTSEEEEEETTT---THHHHHHTTCCSSSEE
T ss_pred             cccCCCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCC---CHHHHHHcCCccccEE
Confidence            4455568999999999878999999999999999999999999999999999999999999   5669999999999999


Q ss_pred             EEeeccccccccccCCCCcc
Q 018973          200 SFYKSMEKIHEEEGIGPDQL  219 (348)
Q Consensus       200 ~~~~~g~~v~~~~G~~~~~l  219 (348)
                      ++|++|+.+.++.|.+.+.+
T Consensus        89 ~~~~~G~~~~~~~G~~~~~l  108 (116)
T 3qfa_C           89 QFFKKGQKVGEFSGANKEKL  108 (116)
T ss_dssp             EEESSSSEEEEEESCCHHHH
T ss_pred             EEEeCCeEEEEEcCCCHHHH
Confidence            99999999998888644433

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=99.83  E-value=7.9e-21  Score=156.04  Aligned_cols=99  Identities=13%  Similarity=0.097  Sum_probs=92.2

Q ss_pred             ChhhHHHHhhhcccCCcEEEEEEeCCC--ChhhhhhhhHHHHHHHHhCCc-EEEEEEECCCchhHHHHHHhCCCCccceE
Q 018973          238 SKEDVEKLIDDHKVDQKLIVLDVGLKH--CGPCVKVYPTVIKLSRQMAGT-VVFARMNGDENDSCMQFLRDMNVVEVPTF  314 (348)
Q Consensus       238 s~~~~~~~l~~~~~~~k~vvV~F~a~w--C~~C~~~~p~l~~la~~~~~~-v~~~~vd~~~~~~~~~l~~~~~V~~~PTl  314 (348)
                      +.++|++.+.    ++++++|+||++|  |++|+.+.|.|++++++|.++ ++|++||+|++++   ++.+|+|.++||+
T Consensus        23 t~~~F~~~v~----~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~~v~~~KVdvDe~~~---lA~~ygV~sIPTl   95 (140)
T 2qgv_A           23 SESRLDDWLT----QAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQSEA---IGDRFGAFRFPAT   95 (140)
T ss_dssp             CHHHHHHHHH----TCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHHHHHH---HHHHHTCCSSSEE
T ss_pred             CHHHHHHHHh----CCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEECCCCHH---HHHHcCCccCCEE
Confidence            5688998885    3678999999999  999999999999999999888 9999999999887   9999999999999


Q ss_pred             EEEeCCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973          315 LFIRDGQIRGRYVGS-GKGELIGEILRYQG  343 (348)
Q Consensus       315 ~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~  343 (348)
                      ++|++|+.+++..|. +.++|.++|++++.
T Consensus        96 ilFk~G~~v~~~~G~~~k~~l~~~i~~~l~  125 (140)
T 2qgv_A           96 LVFTGGNYRGVLNGIHPWAELINLMRGLVE  125 (140)
T ss_dssp             EEEETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EEEECCEEEEEEecCCCHHHHHHHHHHHhc
Confidence            999999999999999 99999999998874

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=99.83  E-value=5.6e-21  Score=156.91  Aligned_cols=94  Identities=16%  Similarity=0.148  Sum_probs=83.6

Q ss_pred             ceEecCHHHHHHHHHhcCCCEEEEEEeCCC--CHHHHhhhhHHHHHHHHcCC--cEEEEEeCCCchhHHHHHHHcCcCCC
Q 018973          121 VKKVHSIEEFDEALRLAKNKLVVVEFAASR--SLDSSKIYPFMVDLSRQCND--VEFILVMGDESEKTKELCEREKIKKV  196 (348)
Q Consensus       121 v~~v~s~~~f~~~l~~~~~k~vvV~F~a~w--C~~C~~~~p~l~~la~~~~~--v~f~~vd~d~~~~~~~l~~~~~V~~~  196 (348)
                      +..+ |.++|++.+.  .+++|||+|||+|  |+||+.+.|.|++++++|++  +.|++||+|+   .++++.+|||+++
T Consensus        19 ~~~~-t~~~F~~~v~--~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~~v~~~KVdvDe---~~~lA~~ygV~sI   92 (140)
T 2qgv_A           19 WTPV-SESRLDDWLT--QAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQ---SEAIGDRFGAFRF   92 (140)
T ss_dssp             CEEC-CHHHHHHHHH--TCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHHH---HHHHHHHHTCCSS
T ss_pred             CccC-CHHHHHHHHh--CCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEECCC---CHHHHHHcCCccC
Confidence            4455 8899999996  6788999999999  99999999999999999964  8999999998   6779999999999


Q ss_pred             CeEEEeeccccccccccCCC-Cccc
Q 018973          197 PHFSFYKSMEKIHEEEGIGP-DQLM  220 (348)
Q Consensus       197 Pt~~~~~~g~~v~~~~G~~~-~~l~  220 (348)
                      ||+++|++|+.+++..|... +++.
T Consensus        93 PTlilFk~G~~v~~~~G~~~k~~l~  117 (140)
T 2qgv_A           93 PATLVFTGGNYRGVLNGIHPWAELI  117 (140)
T ss_dssp             SEEEEEETTEEEEEEESCCCHHHHH
T ss_pred             CEEEEEECCEEEEEEecCCCHHHHH
Confidence            99999999999999999654 3443

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=99.83  E-value=2.1e-20  Score=145.58  Aligned_cols=96  Identities=34%  Similarity=0.549  Sum_probs=88.0

Q ss_pred             ceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEE
Q 018973          121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFS  200 (348)
Q Consensus       121 v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~  200 (348)
                      +.++.+.++|++.+++.++++++|+||++||++|+.+.|.+++++++++++.|+.||+++   .++++++|+|+++||++
T Consensus         2 v~~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~vd~~~---~~~~~~~~~v~~~Pt~~   78 (105)
T 3m9j_A            2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD---CQDVASESEVKSMPTFQ   78 (105)
T ss_dssp             CEECCSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTSEEEEEETTT---CHHHHHHTTCCBSSEEE
T ss_pred             eEEcCCHHHHHHHHHhcCCCeEEEEEECCCChhhHHHHHHHHHHHHHccCeEEEEEEhhh---hHHHHHHcCCCcCcEEE
Confidence            678999999999999888999999999999999999999999999999999999999999   55699999999999999


Q ss_pred             EeeccccccccccCCCCcc
Q 018973          201 FYKSMEKIHEEEGIGPDQL  219 (348)
Q Consensus       201 ~~~~g~~v~~~~G~~~~~l  219 (348)
                      +|++|+.+.++.|.+.+.+
T Consensus        79 ~~~~g~~~~~~~g~~~~~l   97 (105)
T 3m9j_A           79 FFKKGQKVGEFSGANKEKL   97 (105)
T ss_dssp             EEETTEEEEEEESSCHHHH
T ss_pred             EEECCeEEEEEeCCCHHHH
Confidence            9999999998888644443

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=99.83  E-value=1.3e-19  Score=141.98  Aligned_cols=105  Identities=22%  Similarity=0.405  Sum_probs=94.7

Q ss_pred             eeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccc
Q 018973          233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVP  312 (348)
Q Consensus       233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~P  312 (348)
                      +..+.+.++|++.+.+.  .+++++|+||++||++|+.+.|.+.+++++++ ++.|+.+|++++++   ++++|+|.++|
T Consensus         3 v~~i~~~~~~~~~~~~~--~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~---~~~~~~v~~~P   76 (107)
T 1gh2_A            3 VKPVGSDPDFQPELSGA--GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP-QAVFLEVDVHQCQG---TAATNNISATP   76 (107)
T ss_dssp             EEEECSGGGHHHHHHHT--TTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTSHH---HHHHTTCCSSS
T ss_pred             eEEecCHHHHHHHHHhC--CCCEEEEEEECCCChhhHHHHHHHHHHHHHCC-CcEEEEEECccCHH---HHHhcCCCccc
Confidence            56677889999988642  47999999999999999999999999999994 69999999999887   99999999999


Q ss_pred             eEEEEeCCeEEEEEeCCChHHHHHHHHHHhC
Q 018973          313 TFLFIRDGQIRGRYVGSGKGELIGEILRYQG  343 (348)
Q Consensus       313 Tl~~~~~G~~v~~~~G~~~~~L~~~l~~~~~  343 (348)
                      |+++|++|+.+.++.|.+.++|.++|++++|
T Consensus        77 t~~~~~~G~~~~~~~G~~~~~l~~~l~~~lg  107 (107)
T 1gh2_A           77 TFQFFRNKVRIDQYQGADAVGLEEKIKQHLE  107 (107)
T ss_dssp             EEEEEETTEEEEEEESSCHHHHHHHHHHHHC
T ss_pred             EEEEEECCeEEEEEeCCCHHHHHHHHHHhcC
Confidence            9999999999999999966679999998875

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=99.82  E-value=3.9e-20  Score=149.68  Aligned_cols=102  Identities=32%  Similarity=0.474  Sum_probs=90.8

Q ss_pred             CCCCCCceEecCHHHHHHHHHhc--CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcC
Q 018973          115 APRDERVKKVHSIEEFDEALRLA--KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREK  192 (348)
Q Consensus       115 ~~~~~~v~~v~s~~~f~~~l~~~--~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~  192 (348)
                      ....+.+.++.+.++|++.+..+  ++++++|+||++||++|+.+.|.|++++++++++.|+.||+|+   ..+++++|+
T Consensus        12 ~~~~~~v~~l~~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~~vd~d~---~~~l~~~~~   88 (124)
T 1xfl_A           12 ASEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDE---LKSVASDWA   88 (124)
T ss_dssp             CCCCSCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCSSEEEEEEETTT---SHHHHHHTT
T ss_pred             hcCCCcEEEeCCHHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCcEEEEEECcc---CHHHHHHcC
Confidence            34566799999999999998865  5899999999999999999999999999999999999999998   556999999


Q ss_pred             cCCCCeEEEeeccccccccccCCCCcc
Q 018973          193 IKKVPHFSFYKSMEKIHEEEGIGPDQL  219 (348)
Q Consensus       193 V~~~Pt~~~~~~g~~v~~~~G~~~~~l  219 (348)
                      |+++||+++|++|+.+.++.|.+.+.+
T Consensus        89 v~~~Pt~~~~~~G~~~~~~~G~~~~~l  115 (124)
T 1xfl_A           89 IQAMPTFMFLKEGKILDKVVGAKKDEL  115 (124)
T ss_dssp             CCSSSEEEEEETTEEEEEEESCCHHHH
T ss_pred             CCccCEEEEEECCEEEEEEeCCCHHHH
Confidence            999999999999999988888544443

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=99.82  E-value=2.5e-20  Score=147.10  Aligned_cols=98  Identities=23%  Similarity=0.428  Sum_probs=86.9

Q ss_pred             CCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCC
Q 018973          118 DERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVP  197 (348)
Q Consensus       118 ~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~P  197 (348)
                      .+......+.++|+++++  ++++++|+||++||++|+.+.|.|++++++++++.|+.||+|+   ..+++++|+|+++|
T Consensus         5 ~~~~~~~~~~~~f~~~~~--~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vd~~~---~~~l~~~~~v~~~P   79 (109)
T 3f3q_A            5 HHMVTQFKTASEFDSAIA--QDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDE---LGDVAQKNEVSAMP   79 (109)
T ss_dssp             CCCCEECCSHHHHHHHTT--SSSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTT---CHHHHHHTTCCSSS
T ss_pred             cccccCCCCHHHHHHHHh--cCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCCCEEEEEECCC---CHHHHHHcCCCccC
Confidence            344555678999999997  6999999999999999999999999999999999999999998   55699999999999


Q ss_pred             eEEEeeccccccccccCCCCccc
Q 018973          198 HFSFYKSMEKIHEEEGIGPDQLM  220 (348)
Q Consensus       198 t~~~~~~g~~v~~~~G~~~~~l~  220 (348)
                      |+++|++|+.+.++.|...+.+.
T Consensus        80 t~~~~~~G~~~~~~~G~~~~~l~  102 (109)
T 3f3q_A           80 TLLLFKNGKEVAKVVGANPAAIK  102 (109)
T ss_dssp             EEEEEETTEEEEEEESSCHHHHH
T ss_pred             EEEEEECCEEEEEEeCCCHHHHH
Confidence            99999999999999887554443

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=99.82  E-value=4.1e-20  Score=154.96  Aligned_cols=128  Identities=26%  Similarity=0.392  Sum_probs=96.4

Q ss_pred             CCCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCC
Q 018973          117 RDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKV  196 (348)
Q Consensus       117 ~~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~  196 (348)
                      ..+.+..+.+.++|++++.+.+++++||+||++||++|+.+.|.|++++++++++.|+.||+++   ..+++++|+|+++
T Consensus        10 ~~~~v~~l~~~~~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~~~---~~~l~~~~~v~~~   86 (153)
T 2wz9_A           10 AVAAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEG---VPEVSEKYEISSV   86 (153)
T ss_dssp             --CCSEEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTT---SHHHHHHTTCCSS
T ss_pred             ccCCeEEcCCHHHHHHHHHhcCCCeEEEEEECCCCHhHHHHHHHHHHHHHHcCCeEEEEEECCC---CHHHHHHcCCCCC
Confidence            3467899989999999998766999999999999999999999999999999999999999999   5569999999999


Q ss_pred             CeEEEeeccccccccccCCCCcccccccccCC----CccceeecCChhhHHHHhh
Q 018973          197 PHFSFYKSMEKIHEEEGIGPDQLMGDVLYYGD----SHSAVVQLHSKEDVEKLID  247 (348)
Q Consensus       197 Pt~~~~~~g~~v~~~~G~~~~~l~~~v~~~~~----~~~~v~~~~s~~~~~~~l~  247 (348)
                      ||+++|++|+.+.++.|...+.+...+.....    ..+......+.++|+.+..
T Consensus        87 Pt~~~~~~G~~~~~~~G~~~~~l~~~i~~~l~~~~~~~~~~~~~l~~~~f~~~~~  141 (153)
T 2wz9_A           87 PTFLFFKNSQKIDRLDGAHAPELTKKVQRHASSGSFLPSAKVKVDTDPNSSSVDK  141 (153)
T ss_dssp             SEEEEEETTEEEEEEESSCHHHHHHHHHHHSCTTSSCSCCCCCCC----------
T ss_pred             CEEEEEECCEEEEEEeCCCHHHHHHHHHHHhccccCCCccccccCCCCChhhHHH
Confidence            99999999999999999776666554433211    1122333335566665544

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=99.81  E-value=3.8e-19  Score=143.80  Aligned_cols=110  Identities=27%  Similarity=0.545  Sum_probs=99.8

Q ss_pred             CccceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCC
Q 018973          229 SHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNV  308 (348)
Q Consensus       229 ~~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V  308 (348)
                      ....++.+.+.+++++.+......+++++|+||++||++|+.+.|.|.+++++++ ++.|+.+|++++.+   ++++|+|
T Consensus        14 ~~~~v~~l~~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~-~v~~~~vd~d~~~~---l~~~~~v   89 (124)
T 1xfl_A           14 EEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP-NVLFLKVDTDELKS---VASDWAI   89 (124)
T ss_dssp             CCSCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS-SEEEEEEETTTSHH---HHHHTTC
T ss_pred             CCCcEEEeCCHHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-CcEEEEEECccCHH---HHHHcCC
Confidence            3456788889999999998754458999999999999999999999999999986 69999999999887   9999999


Q ss_pred             CccceEEEEeCCeEEEEEeCCChHHHHHHHHHHh
Q 018973          309 VEVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQ  342 (348)
Q Consensus       309 ~~~PTl~~~~~G~~v~~~~G~~~~~L~~~l~~~~  342 (348)
                      .++||++++++|+++.++.|.+.++|.++|++++
T Consensus        90 ~~~Pt~~~~~~G~~~~~~~G~~~~~l~~~l~~~l  123 (124)
T 1xfl_A           90 QAMPTFMFLKEGKILDKVVGAKKDELQSTIAKHL  123 (124)
T ss_dssp             CSSSEEEEEETTEEEEEEESCCHHHHHHHHHHHC
T ss_pred             CccCEEEEEECCEEEEEEeCCCHHHHHHHHHHhc
Confidence            9999999999999999999998899999998875

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=99.81  E-value=1.5e-19  Score=144.31  Aligned_cols=105  Identities=29%  Similarity=0.508  Sum_probs=95.3

Q ss_pred             ceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCcc
Q 018973          232 AVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEV  311 (348)
Q Consensus       232 ~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~  311 (348)
                      ......+.++|++.+.+.  .+++++|+||++||++|+.+.|.|.++++++++ +.|+.||++++++   ++++|+|.++
T Consensus        12 ~~~~~~t~~~f~~~l~~~--~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~vd~d~~~~---l~~~~~v~~~   85 (116)
T 3qfa_C           12 SVKQIESKTAFQEALDAA--GDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN-VIFLEVDVDDCQD---VASECEVKSM   85 (116)
T ss_dssp             CCBCCCCHHHHHHHHHHH--TTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTT-SEEEEEETTTTHH---HHHHTTCCSS
T ss_pred             cccCCCCHHHHHHHHHhc--CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCCCHH---HHHHcCCccc
Confidence            345566889999999864  589999999999999999999999999999976 9999999999887   9999999999


Q ss_pred             ceEEEEeCCeEEEEEeCCChHHHHHHHHHHh
Q 018973          312 PTFLFIRDGQIRGRYVGSGKGELIGEILRYQ  342 (348)
Q Consensus       312 PTl~~~~~G~~v~~~~G~~~~~L~~~l~~~~  342 (348)
                      ||+++|++|+++.++.|.+.++|.++|++++
T Consensus        86 Pt~~~~~~G~~~~~~~G~~~~~l~~~l~~~l  116 (116)
T 3qfa_C           86 PTFQFFKKGQKVGEFSGANKEKLEATINELV  116 (116)
T ss_dssp             SEEEEESSSSEEEEEESCCHHHHHHHHHHHC
T ss_pred             cEEEEEeCCeEEEEEcCCCHHHHHHHHHHhC
Confidence            9999999999999999999999999998763

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=99.81  E-value=2.5e-19  Score=141.15  Aligned_cols=110  Identities=25%  Similarity=0.455  Sum_probs=98.5

Q ss_pred             cceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCc
Q 018973          231 SAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVE  310 (348)
Q Consensus       231 ~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~  310 (348)
                      +.+..+.+.+++++.+..+...+++++|+||++||++|+.+.|.|.++++++++++.|+.+|++++.+   ++++|+|.+
T Consensus         2 ~~v~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~---~~~~~~v~~   78 (112)
T 1ep7_A            2 GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAA---VAEAAGITA   78 (112)
T ss_dssp             CSEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHH---HHHHHTCCB
T ss_pred             CcEEEecCHHHHHHHHHhhcccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCCeEEEEEECCchHH---HHHHcCCCc
Confidence            34677888899999988642237899999999999999999999999999997679999999999887   999999999


Q ss_pred             cceEEEEeCCeEEEEEeCCChHHHHHHHHHHhC
Q 018973          311 VPTFLFIRDGQIRGRYVGSGKGELIGEILRYQG  343 (348)
Q Consensus       311 ~PTl~~~~~G~~v~~~~G~~~~~L~~~l~~~~~  343 (348)
                      +||++++++|+++.++.|.+.++|.++|++++.
T Consensus        79 ~Pt~~~~~~G~~~~~~~G~~~~~l~~~l~~~l~  111 (112)
T 1ep7_A           79 MPTFHVYKDGVKADDLVGASQDKLKALVAKHAA  111 (112)
T ss_dssp             SSEEEEEETTEEEEEEESCCHHHHHHHHHHHHC
T ss_pred             ccEEEEEECCeEEEEEcCCCHHHHHHHHHHHhc
Confidence            999999999999999999988999999998864

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=99.81  E-value=5.7e-20  Score=145.04  Aligned_cols=97  Identities=25%  Similarity=0.298  Sum_probs=86.1

Q ss_pred             CCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCC-CchhHHHHHHHcCcCCC
Q 018973          118 DERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGD-ESEKTKELCEREKIKKV  196 (348)
Q Consensus       118 ~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d-~~~~~~~l~~~~~V~~~  196 (348)
                      .+.+..+ +.++|++.+.+.++++++|+||++||++|+.+.|.|++++++++++.|+.||++ +   ..+++++|+|+++
T Consensus         4 ~~~v~~l-~~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~---~~~~~~~~~v~~~   79 (111)
T 2pu9_C            4 VGKVTEV-NKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFLKLDCNQE---NKTLAKELGIRVV   79 (111)
T ss_dssp             TTSEEEE-CTTTHHHHHTTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSST---THHHHHHHCCSBS
T ss_pred             cCccEEe-chHHHHHHHHhcCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCCCeEEEEEecCcc---hHHHHHHcCCCee
Confidence            4567787 679999999876799999999999999999999999999999999999999998 5   4579999999999


Q ss_pred             CeEEEeeccccccccccCCCCc
Q 018973          197 PHFSFYKSMEKIHEEEGIGPDQ  218 (348)
Q Consensus       197 Pt~~~~~~g~~v~~~~G~~~~~  218 (348)
                      ||++++++|+.+.++.|...+.
T Consensus        80 Pt~~~~~~G~~~~~~~G~~~~~  101 (111)
T 2pu9_C           80 PTFKILKENSVVGEVTGAKYDK  101 (111)
T ss_dssp             SEEEEESSSSEEEEEESSCHHH
T ss_pred             eEEEEEeCCcEEEEEcCCCHHH
Confidence            9999999999998888864333

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=99.81  E-value=5.7e-20  Score=144.90  Aligned_cols=97  Identities=28%  Similarity=0.360  Sum_probs=87.1

Q ss_pred             CCceEecCHHHHHHHHHhcC--CCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC-CcEEEEEeCCCchhHHHHHHHcCcCC
Q 018973          119 ERVKKVHSIEEFDEALRLAK--NKLVVVEFAASRSLDSSKIYPFMVDLSRQCN-DVEFILVMGDESEKTKELCEREKIKK  195 (348)
Q Consensus       119 ~~v~~v~s~~~f~~~l~~~~--~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~-~v~f~~vd~d~~~~~~~l~~~~~V~~  195 (348)
                      +.+.++.+.++|++.+.+++  +++++|+||++||++|+.+.|.|++++++++ ++.|+.||+|+   ..+++++|+|++
T Consensus         2 ~~v~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~---~~~~~~~~~v~~   78 (112)
T 1ep7_A            2 GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDA---VAAVAEAAGITA   78 (112)
T ss_dssp             CSEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTT---THHHHHHHTCCB
T ss_pred             CcEEEecCHHHHHHHHHhhcccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCCeEEEEEECCc---hHHHHHHcCCCc
Confidence            46889999999999998655  8999999999999999999999999999998 69999999998   556999999999


Q ss_pred             CCeEEEeeccccccccccCCCCc
Q 018973          196 VPHFSFYKSMEKIHEEEGIGPDQ  218 (348)
Q Consensus       196 ~Pt~~~~~~g~~v~~~~G~~~~~  218 (348)
                      +||+++|++|+.+.++.|.+.+.
T Consensus        79 ~Pt~~~~~~G~~~~~~~G~~~~~  101 (112)
T 1ep7_A           79 MPTFHVYKDGVKADDLVGASQDK  101 (112)
T ss_dssp             SSEEEEEETTEEEEEEESCCHHH
T ss_pred             ccEEEEEECCeEEEEEcCCCHHH
Confidence            99999999999998887764333

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=99.81  E-value=4.5e-19  Score=139.37  Aligned_cols=105  Identities=23%  Similarity=0.426  Sum_probs=95.1

Q ss_pred             ceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCcc
Q 018973          232 AVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEV  311 (348)
Q Consensus       232 ~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~  311 (348)
                      .+..+ +.+++++.+..   .+++++|+||++||++|+.+.|.+.++++++++++.|+.+|++++++   ++++|+|.++
T Consensus         5 ~v~~l-~~~~~~~~~~~---~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~---l~~~~~v~~~   77 (111)
T 3gnj_A            5 SLEKL-DTNTFEQLIYD---EGKACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKT---LFQRFSLKGV   77 (111)
T ss_dssp             CSEEC-CHHHHHHHHTT---SCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHH---HHHHTTCCSS
T ss_pred             cceec-CHHHHHHHHHh---cCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCCceEEEEEECCcChh---HHHhcCCCcC
Confidence            34444 67889988854   37999999999999999999999999999998789999999999887   9999999999


Q ss_pred             ceEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973          312 PTFLFIRDGQIRGRYVGS-GKGELIGEILRYQG  343 (348)
Q Consensus       312 PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~  343 (348)
                      ||+++|++|+.+.++.|. +.++|.++|+++++
T Consensus        78 Pt~~~~~~g~~~~~~~g~~~~~~l~~~l~~~l~  110 (111)
T 3gnj_A           78 PQILYFKDGEYKGKMAGDVEDDEVEQMIADVLE  110 (111)
T ss_dssp             CEEEEEETTEEEEEEESSCCHHHHHHHHHHHHH
T ss_pred             CEEEEEECCEEEEEEeccCCHHHHHHHHHHHhc
Confidence            999999999999999999 99999999998864

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=99.81  E-value=5.2e-20  Score=145.38  Aligned_cols=96  Identities=24%  Similarity=0.347  Sum_probs=83.3

Q ss_pred             ceEecCHHHHHHHHHh-cCCCEEEEEEeCCCCHHHHhhhhHHHHHHHH--cCCcEEEEEeCCCchhHHHHHHHcCcCCCC
Q 018973          121 VKKVHSIEEFDEALRL-AKNKLVVVEFAASRSLDSSKIYPFMVDLSRQ--CNDVEFILVMGDESEKTKELCEREKIKKVP  197 (348)
Q Consensus       121 v~~v~s~~~f~~~l~~-~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~--~~~v~f~~vd~d~~~~~~~l~~~~~V~~~P  197 (348)
                      +.++.+.++|++.+.+ .++++++|+||++||++|+.+.|.|++++++  ++++.|+.||+++   ..+++++|+|+++|
T Consensus         2 v~~i~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~---~~~~~~~~~v~~~P   78 (112)
T 3d6i_A            2 VIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADE---NSEISELFEISAVP   78 (112)
T ss_dssp             EEEECCHHHHHHHHTTTTTTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTT---CHHHHHHTTCCSSS
T ss_pred             ccccCCHHHHHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEeccc---CHHHHHHcCCCccc
Confidence            6788788999999975 4589999999999999999999999999998  6779999999998   45699999999999


Q ss_pred             eEEEeeccccccccccCCCCcc
Q 018973          198 HFSFYKSMEKIHEEEGIGPDQL  219 (348)
Q Consensus       198 t~~~~~~g~~v~~~~G~~~~~l  219 (348)
                      |+++|++|+.+.++.|...+++
T Consensus        79 t~~~~~~G~~~~~~~G~~~~~l  100 (112)
T 3d6i_A           79 YFIIIHKGTILKELSGADPKEY  100 (112)
T ss_dssp             EEEEEETTEEEEEECSCCHHHH
T ss_pred             EEEEEECCEEEEEecCCCHHHH
Confidence            9999999999998888654433

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=99.81  E-value=6.5e-19  Score=138.95  Aligned_cols=104  Identities=25%  Similarity=0.458  Sum_probs=93.6

Q ss_pred             cceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCc
Q 018973          231 SAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVE  310 (348)
Q Consensus       231 ~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~  310 (348)
                      +......+.++|++.+.    .+++++|+||++||++|+.+.|.+.++++++++ +.|+.+|++++.+   ++++|+|.+
T Consensus         6 ~~~~~~~~~~~f~~~~~----~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~-~~~~~vd~~~~~~---l~~~~~v~~   77 (109)
T 3f3q_A            6 HMVTQFKTASEFDSAIA----QDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQ-ADFYKLDVDELGD---VAQKNEVSA   77 (109)
T ss_dssp             CCCEECCSHHHHHHHTT----SSSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTCHH---HHHHTTCCS
T ss_pred             ccccCCCCHHHHHHHHh----cCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCC-CEEEEEECCCCHH---HHHHcCCCc
Confidence            34445667889998886    479999999999999999999999999999965 9999999999887   999999999


Q ss_pred             cceEEEEeCCeEEEEEeCCChHHHHHHHHHHh
Q 018973          311 VPTFLFIRDGQIRGRYVGSGKGELIGEILRYQ  342 (348)
Q Consensus       311 ~PTl~~~~~G~~v~~~~G~~~~~L~~~l~~~~  342 (348)
                      +||+++|++|+++.++.|.+.++|.++|++++
T Consensus        78 ~Pt~~~~~~G~~~~~~~G~~~~~l~~~i~~~l  109 (109)
T 3f3q_A           78 MPTLLLFKNGKEVAKVVGANPAAIKQAIAANA  109 (109)
T ss_dssp             SSEEEEEETTEEEEEEESSCHHHHHHHHHHHC
T ss_pred             cCEEEEEECCEEEEEEeCCCHHHHHHHHHhhC
Confidence            99999999999999999998899999998764

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=99.81  E-value=6.3e-19  Score=137.13  Aligned_cols=104  Identities=30%  Similarity=0.544  Sum_probs=95.4

Q ss_pred             eeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccc
Q 018973          233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVP  312 (348)
Q Consensus       233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~P  312 (348)
                      +..+.+.+++++.+...  .+++++|+||++||++|+.+.|.+.++++++++ +.|+.+|++++++   ++++|+|.++|
T Consensus         2 v~~i~~~~~~~~~l~~~--~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~vd~~~~~~---~~~~~~v~~~P   75 (105)
T 3m9j_A            2 VKQIESKTAFQEALDAA--GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN-VIFLEVDVDDCQD---VASESEVKSMP   75 (105)
T ss_dssp             CEECCSHHHHHHHHHHT--TTSCEEEEEECTTCHHHHHHHHHHHHHHHHSTT-SEEEEEETTTCHH---HHHHTTCCBSS
T ss_pred             eEEcCCHHHHHHHHHhc--CCCeEEEEEECCCChhhHHHHHHHHHHHHHccC-eEEEEEEhhhhHH---HHHHcCCCcCc
Confidence            45678899999999865  589999999999999999999999999999965 9999999999887   99999999999


Q ss_pred             eEEEEeCCeEEEEEeCCChHHHHHHHHHHh
Q 018973          313 TFLFIRDGQIRGRYVGSGKGELIGEILRYQ  342 (348)
Q Consensus       313 Tl~~~~~G~~v~~~~G~~~~~L~~~l~~~~  342 (348)
                      |++++++|+.+.++.|.+.++|.++|++++
T Consensus        76 t~~~~~~g~~~~~~~g~~~~~l~~~l~~~l  105 (105)
T 3m9j_A           76 TFQFFKKGQKVGEFSGANKEKLEATINELV  105 (105)
T ss_dssp             EEEEEETTEEEEEEESSCHHHHHHHHHHHC
T ss_pred             EEEEEECCeEEEEEeCCCHHHHHHHHHHhC
Confidence            999999999999999999999999998764

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=99.80  E-value=1.4e-19  Score=146.70  Aligned_cols=95  Identities=23%  Similarity=0.309  Sum_probs=85.5

Q ss_pred             CceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeE
Q 018973          120 RVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHF  199 (348)
Q Consensus       120 ~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~  199 (348)
                      .+.++.+.++|++.+.  +++++||+|||+||++|+.+.|.|++++++++++.|+.||+|+   ..+++++|+|+++||+
T Consensus        20 mv~~l~~~~~f~~~~~--~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~---~~~l~~~~~v~~~Pt~   94 (125)
T 1r26_A           20 SVVDVYSVEQFRNIMS--EDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADN---NSEIVSKCRVLQLPTF   94 (125)
T ss_dssp             CCEEECCHHHHHHHHH--SSSCEEEEEECTTCHHHHHTHHHHHHHHHHCTTSEEEEEETTT---CHHHHHHTTCCSSSEE
T ss_pred             ceEECCCHHHHHHHHc--cCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCCCEEEEEECCC---CHHHHHHcCCCcccEE
Confidence            4889988899999995  7899999999999999999999999999999899999999998   4569999999999999


Q ss_pred             EEeeccccccccccCCCCcc
Q 018973          200 SFYKSMEKIHEEEGIGPDQL  219 (348)
Q Consensus       200 ~~~~~g~~v~~~~G~~~~~l  219 (348)
                      ++|++|+.+.++.|.+.+.+
T Consensus        95 ~i~~~G~~~~~~~G~~~~~l  114 (125)
T 1r26_A           95 IIARSGKMLGHVIGANPGML  114 (125)
T ss_dssp             EEEETTEEEEEEESSCHHHH
T ss_pred             EEEeCCeEEEEEeCCCHHHH
Confidence            99999999988888544433

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=99.80  E-value=6.8e-20  Score=145.99  Aligned_cols=96  Identities=21%  Similarity=0.370  Sum_probs=87.0

Q ss_pred             CCCCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCC
Q 018973          116 PRDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKK  195 (348)
Q Consensus       116 ~~~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~  195 (348)
                      .+.+.+.++.+.++|+++++  ++++++|+||++||++|+.+.|.|++++++++++.|+.||+++   ..+++++|+|++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~--~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~v~~~~vd~~~---~~~l~~~~~v~~   83 (114)
T 2oe3_A            9 SSYTSITKLTNLTEFRNLIK--QNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDE---SPDIAKECEVTA   83 (114)
T ss_dssp             CCGGGSCBCCSHHHHHHHHH--HCSEEEEEEECTTCHHHHHTHHHHHHHHHHCTTSEEEEEETTT---CHHHHHHTTCCS
T ss_pred             cchhheeecCCHHHHHHHHh--CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCC---CHHHHHHCCCCc
Confidence            34567888899999999987  5899999999999999999999999999999999999999998   456999999999


Q ss_pred             CCeEEEeeccccccccccCCC
Q 018973          196 VPHFSFYKSMEKIHEEEGIGP  216 (348)
Q Consensus       196 ~Pt~~~~~~g~~v~~~~G~~~  216 (348)
                      +||+++|++|+.+.++.|...
T Consensus        84 ~Pt~~~~~~G~~~~~~~G~~~  104 (114)
T 2oe3_A           84 MPTFVLGKDGQLIGKIIGANP  104 (114)
T ss_dssp             BSEEEEEETTEEEEEEESSCH
T ss_pred             ccEEEEEeCCeEEEEEeCCCH
Confidence            999999999999998888653

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=99.80  E-value=8e-20  Score=142.94  Aligned_cols=101  Identities=18%  Similarity=0.221  Sum_probs=78.5

Q ss_pred             eecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccce
Q 018973          234 VQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPT  313 (348)
Q Consensus       234 ~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PT  313 (348)
                      ..+.+.+++++.+.    .+++++|+||++||++|+.+.|.+.+++++++ ++.|+.+|++++++   ++++|+|.++||
T Consensus         3 ~~i~~~~~~~~~~~----~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~-~~~~~~vd~~~~~~---l~~~~~v~~~Pt   74 (105)
T 4euy_A            3 NTFKTIEELATYIE----EQQLVLLFIKTENCGVCDVMLRKVNYVLENYN-YVEKIEILLQDMQE---IAGRYAVFTGPT   74 (105)
T ss_dssp             -------CCSSSTT----CSSEEEEEEEESSCHHHHHHHHHHHHHHHTCT-TEEEEEEEECCC------------CCCCE
T ss_pred             cccCCHHHHHHHHh----cCCCEEEEEeCCCCcchHHHHHHHHHHHHHcC-CceEEEEECCCCHH---HHHhcCCCCCCE
Confidence            34556677777774    47999999999999999999999999999994 69999999999987   999999999999


Q ss_pred             EEEEeCCeEEEEEeCC-ChHHHHHHHHHHh
Q 018973          314 FLFIRDGQIRGRYVGS-GKGELIGEILRYQ  342 (348)
Q Consensus       314 l~~~~~G~~v~~~~G~-~~~~L~~~l~~~~  342 (348)
                      +++|++|+.+.++.|. +.++|.++|++++
T Consensus        75 ~~~~~~G~~~~~~~g~~~~~~l~~~l~~~~  104 (105)
T 4euy_A           75 VLLFYNGKEILRESRFISLENLERTIQLFE  104 (105)
T ss_dssp             EEEEETTEEEEEEESSCCHHHHHHHHHTTC
T ss_pred             EEEEeCCeEEEEEeCCcCHHHHHHHHHHhh
Confidence            9999999999999999 9999999998764

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=99.80  E-value=1.8e-19  Score=142.18  Aligned_cols=101  Identities=28%  Similarity=0.460  Sum_probs=90.2

Q ss_pred             CCCCceEecCHHHHHHHHHhcC--CCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcC
Q 018973          117 RDERVKKVHSIEEFDEALRLAK--NKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIK  194 (348)
Q Consensus       117 ~~~~v~~v~s~~~f~~~l~~~~--~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~  194 (348)
                      ..+.+.++.+.++|++.+..+.  +++++|+||++||++|+.+.|.|++++++++++.|+.||+|+   ..+++++|+|+
T Consensus         2 ~~~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~v~~~~---~~~~~~~~~v~   78 (113)
T 1ti3_A            2 EEGQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDE---LKAVAEEWNVE   78 (113)
T ss_dssp             CCCCEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCSSEEEEEEETTT---CHHHHHHHHCS
T ss_pred             CCCceeEeccHHHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCCCcEEEEEEccc---cHHHHHhCCCC
Confidence            3467999999999999998643  899999999999999999999999999999999999999998   45699999999


Q ss_pred             CCCeEEEeeccccccccccCCCCccc
Q 018973          195 KVPHFSFYKSMEKIHEEEGIGPDQLM  220 (348)
Q Consensus       195 ~~Pt~~~~~~g~~v~~~~G~~~~~l~  220 (348)
                      ++||+++|++|+.+.++.|.+.+.+.
T Consensus        79 ~~Pt~~~~~~G~~~~~~~g~~~~~l~  104 (113)
T 1ti3_A           79 AMPTFIFLKDGKLVDKTVGADKDGLP  104 (113)
T ss_dssp             STTEEEEEETTEEEEEEECCCTTHHH
T ss_pred             cccEEEEEeCCEEEEEEecCCHHHHH
Confidence            99999999999999988886555444

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=99.80  E-value=1.6e-19  Score=140.19  Aligned_cols=96  Identities=22%  Similarity=0.380  Sum_probs=86.2

Q ss_pred             ceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEE
Q 018973          121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFS  200 (348)
Q Consensus       121 v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~  200 (348)
                      |.++.+.++|++.+.+.++++++|+||++||++|+.+.|.|++++++++++.|+.||+++   .++++++|+|+++||++
T Consensus         1 v~~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~---~~~~~~~~~v~~~Pt~~   77 (104)
T 2vim_A            1 MRVLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIPEVEFAKVDVDQ---NEEAAAKYSVTAMPTFV   77 (104)
T ss_dssp             CEECCSHHHHHHHHHTTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTT---CHHHHHHTTCCSSSEEE
T ss_pred             CeecCCHHHHHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCCCCEEEEEeccC---CHHHHHHcCCccccEEE
Confidence            467888899999998767999999999999999999999999999999999999999998   45699999999999999


Q ss_pred             EeeccccccccccCCCCcc
Q 018973          201 FYKSMEKIHEEEGIGPDQL  219 (348)
Q Consensus       201 ~~~~g~~v~~~~G~~~~~l  219 (348)
                      ++++|+.+.++.|.+.+.+
T Consensus        78 ~~~~g~~~~~~~G~~~~~l   96 (104)
T 2vim_A           78 FIKDGKEVDRFSGANETKL   96 (104)
T ss_dssp             EEETTEEEEEEESSCHHHH
T ss_pred             EEeCCcEEEEEeCCCHHHH
Confidence            9999999988888544433

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=99.80  E-value=1.2e-18  Score=139.61  Aligned_cols=107  Identities=23%  Similarity=0.487  Sum_probs=95.7

Q ss_pred             cceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCc
Q 018973          231 SAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVE  310 (348)
Q Consensus       231 ~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~  310 (348)
                      +..+...+.++|++.+.+   .+++++|+||++||++|+.+.|.|.++++++.+++.|+.+|++++.+   ++++|+|.+
T Consensus        12 ~~~~~~~~~~~f~~~v~~---~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~~v~~~~vd~d~~~~---l~~~~~v~~   85 (119)
T 1w4v_A           12 STTFNIQDGPDFQDRVVN---SETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTD---LAIEYEVSA   85 (119)
T ss_dssp             CSEEECCSHHHHHHHTTT---CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEETTTTHH---HHHHTTCCS
T ss_pred             ceEEEecChhhHHHHHHc---CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCCHH---HHHHcCCCc
Confidence            344555677889887754   47899999999999999999999999999997789999999999887   999999999


Q ss_pred             cceEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973          311 VPTFLFIRDGQIRGRYVGS-GKGELIGEILRYQG  343 (348)
Q Consensus       311 ~PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~  343 (348)
                      +||+++|++|+++.++.|. +.++|.++|++++|
T Consensus        86 ~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~  119 (119)
T 1w4v_A           86 VPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKLIG  119 (119)
T ss_dssp             SSEEEEEETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             ccEEEEEeCCcEEEEEcCCCCHHHHHHHHHHHhC
Confidence            9999999999999999999 99999999998875

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=99.80  E-value=2.3e-19  Score=150.00  Aligned_cols=86  Identities=17%  Similarity=0.252  Sum_probs=79.5

Q ss_pred             CceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCe
Q 018973          120 RVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPH  198 (348)
Q Consensus       120 ~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt  198 (348)
                      .+..+.+.++|++.+....+++|||+|||+||+||+.+.|.|++++++|++ +.|++||+|+.   ++++++|+|.++||
T Consensus         4 ~l~~i~~~~~~~~~i~~~~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~---~~l~~~~~v~~~Pt   80 (149)
T 3gix_A            4 LLPKLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQT---AVYTQYFDISYIPS   80 (149)
T ss_dssp             SCCEECSHHHHHHHHHHCCSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTTTEEEEEEETTTC---CHHHHHTTCCSSSE
T ss_pred             ceeecCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCcC---HHHHHHcCCCccCe
Confidence            466788999999999755799999999999999999999999999999988 99999999984   45999999999999


Q ss_pred             EEEeeccccc
Q 018973          199 FSFYKSMEKI  208 (348)
Q Consensus       199 ~~~~~~g~~v  208 (348)
                      ++++++|+.+
T Consensus        81 ~~~~~~G~~v   90 (149)
T 3gix_A           81 TVFFFNGQHM   90 (149)
T ss_dssp             EEEEETTEEE
T ss_pred             EEEEECCeEE
Confidence            9999999998

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=99.80  E-value=2.2e-20  Score=146.18  Aligned_cols=89  Identities=16%  Similarity=0.190  Sum_probs=67.5

Q ss_pred             ceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEE
Q 018973          121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFS  200 (348)
Q Consensus       121 v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~  200 (348)
                      +.++.|.++|++.+.  ++++++|+|||+||++|+.+.|.+++++++++++.|+.||+|+   .++++++|+|+++||++
T Consensus         2 m~~i~~~~~~~~~~~--~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~~~---~~~l~~~~~v~~~Pt~~   76 (105)
T 4euy_A            2 MNTFKTIEELATYIE--EQQLVLLFIKTENCGVCDVMLRKVNYVLENYNYVEKIEILLQD---MQEIAGRYAVFTGPTVL   76 (105)
T ss_dssp             --------CCSSSTT--CSSEEEEEEEESSCHHHHHHHHHHHHHHHTCTTEEEEEEEECC---C---------CCCCEEE
T ss_pred             ccccCCHHHHHHHHh--cCCCEEEEEeCCCCcchHHHHHHHHHHHHHcCCceEEEEECCC---CHHHHHhcCCCCCCEEE
Confidence            456778889988884  7899999999999999999999999999999999999999999   45699999999999999


Q ss_pred             EeeccccccccccC
Q 018973          201 FYKSMEKIHEEEGI  214 (348)
Q Consensus       201 ~~~~g~~v~~~~G~  214 (348)
                      +|++|+.+.++.|.
T Consensus        77 ~~~~G~~~~~~~g~   90 (105)
T 4euy_A           77 LFYNGKEILRESRF   90 (105)
T ss_dssp             EEETTEEEEEEESS
T ss_pred             EEeCCeEEEEEeCC
Confidence            99999999888874

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=99.80  E-value=1.8e-18  Score=134.66  Aligned_cols=104  Identities=30%  Similarity=0.546  Sum_probs=94.4

Q ss_pred             eeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccc
Q 018973          233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVP  312 (348)
Q Consensus       233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~P  312 (348)
                      +..+.+.+++++.+.+.  .+++++|+||++||++|+.+.|.+.++++++++++.++.+|++++++   ++++|+|.++|
T Consensus         2 v~~l~~~~~~~~~l~~~--~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~v~~~P   76 (106)
T 1xwb_A            2 VYQVKDKADLDGQLTKA--SGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECED---IAMEYNISSMP   76 (106)
T ss_dssp             EEECCSHHHHHHHHHHH--TTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHH---HHHHTTCCSSS
T ss_pred             ceecCCHHHHHHHHHhc--CCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCCCeEEEEEeccchHH---HHHHcCCCccc
Confidence            45677778999988753  57999999999999999999999999999997779999999999887   99999999999


Q ss_pred             eEEEEeCCeEEEEEeCCChHHHHHHHHHH
Q 018973          313 TFLFIRDGQIRGRYVGSGKGELIGEILRY  341 (348)
Q Consensus       313 Tl~~~~~G~~v~~~~G~~~~~L~~~l~~~  341 (348)
                      |++++++|+.+.++.|.+.++|.++|+++
T Consensus        77 t~~~~~~G~~~~~~~g~~~~~l~~~i~~~  105 (106)
T 1xwb_A           77 TFVFLKNGVKVEEFAGANAKRLEDVIKAN  105 (106)
T ss_dssp             EEEEEETTEEEEEEESCCHHHHHHHHHHT
T ss_pred             EEEEEcCCcEEEEEcCCCHHHHHHHHHHh
Confidence            99999999999999999888899999875

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=99.80  E-value=1.3e-19  Score=144.39  Aligned_cols=95  Identities=27%  Similarity=0.369  Sum_probs=86.2

Q ss_pred             ceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEE
Q 018973          121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFS  200 (348)
Q Consensus       121 v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~  200 (348)
                      +.++.+.++|++.+.+.++++++|+||++||++|+.+.|.|+++++++ ++.|+.||+|+   ..+++++|+|+++||++
T Consensus        15 v~~l~~~~~~~~~l~~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~-~~~~~~vd~~~---~~~~~~~~~v~~~Pt~~   90 (117)
T 2xc2_A           15 LIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY-DAIFVKVDVDK---LEETARKYNISAMPTFI   90 (117)
T ss_dssp             EEECCSTTHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS-SSEEEEEETTT---SHHHHHHTTCCSSSEEE
T ss_pred             eEEeCCHHHHHHHHHhCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc-CcEEEEEECCc---cHHHHHHcCCCccceEE
Confidence            788888899999999778999999999999999999999999999999 99999999998   55699999999999999


Q ss_pred             EeeccccccccccCCCCcc
Q 018973          201 FYKSMEKIHEEEGIGPDQL  219 (348)
Q Consensus       201 ~~~~g~~v~~~~G~~~~~l  219 (348)
                      ++++|+.+.++.|.+.+.+
T Consensus        91 ~~~~G~~~~~~~G~~~~~l  109 (117)
T 2xc2_A           91 AIKNGEKVGDVVGASIAKV  109 (117)
T ss_dssp             EEETTEEEEEEESSCHHHH
T ss_pred             EEeCCcEEEEEeCCCHHHH
Confidence            9999999988888544443

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=99.79  E-value=2.3e-19  Score=144.33  Aligned_cols=98  Identities=22%  Similarity=0.282  Sum_probs=86.1

Q ss_pred             CCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCC
Q 018973          118 DERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVP  197 (348)
Q Consensus       118 ~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~P  197 (348)
                      .+.+..+ +.++|++.+.+.++++++|+||++||++|+.+.|.+++++++++++.|+.||+++.  ..+++++|+|+++|
T Consensus        17 ~~~v~~l-~~~~~~~~~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~vd~~~~--~~~~~~~~~v~~~P   93 (124)
T 1faa_A           17 VGKVTEV-NKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQE--NKTLAKELGIRVVP   93 (124)
T ss_dssp             TTSEEEE-CTTTHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSST--THHHHHHHCCSSSS
T ss_pred             CCceEEe-cchhHHHHHHhcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCCCCEEEEEecCcc--hHHHHHHcCCCeee
Confidence            4567777 67899999987779999999999999999999999999999999999999999831  45799999999999


Q ss_pred             eEEEeeccccccccccCCCCc
Q 018973          198 HFSFYKSMEKIHEEEGIGPDQ  218 (348)
Q Consensus       198 t~~~~~~g~~v~~~~G~~~~~  218 (348)
                      |++++++|+.+.++.|...+.
T Consensus        94 t~~~~~~G~~~~~~~G~~~~~  114 (124)
T 1faa_A           94 TFKILKENSVVGEVTGAKYDK  114 (124)
T ss_dssp             EEEEEETTEEEEEEESSCHHH
T ss_pred             EEEEEeCCcEEEEEcCCCHHH
Confidence            999999999998888864333

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=99.79  E-value=7.5e-19  Score=146.89  Aligned_cols=105  Identities=21%  Similarity=0.353  Sum_probs=94.6

Q ss_pred             eeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccc
Q 018973          233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVP  312 (348)
Q Consensus       233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~P  312 (348)
                      +..+.+.+++++.+...  .+++++|+||++||++|+.+.|.|.++++++++++.|+.||++++++   ++++|+|.++|
T Consensus         5 l~~i~~~~~~~~~i~~~--~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~---l~~~~~v~~~P   79 (149)
T 3gix_A            5 LPKLTSKKEVDQAIKST--AEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAV---YTQYFDISYIP   79 (149)
T ss_dssp             CCEECSHHHHHHHHHHC--CSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTTTEEEEEEETTTCCH---HHHHTTCCSSS
T ss_pred             eeecCCHHHHHHHHHhc--CCCEEEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCcCHH---HHHHcCCCccC
Confidence            44567888999888632  58999999999999999999999999999998779999999999987   99999999999


Q ss_pred             eEEEEeCCeEE---------EEEeC-C-ChHHHHHHHHHHh
Q 018973          313 TFLFIRDGQIR---------GRYVG-S-GKGELIGEILRYQ  342 (348)
Q Consensus       313 Tl~~~~~G~~v---------~~~~G-~-~~~~L~~~l~~~~  342 (348)
                      |++++++|+++         .++.| . +.++|.++|++..
T Consensus        80 t~~~~~~G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~  120 (149)
T 3gix_A           80 STVFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIY  120 (149)
T ss_dssp             EEEEEETTEEEEEECSSSCCSCEESCCSSHHHHHHHHHHHH
T ss_pred             eEEEEECCeEEEeecCCCCCCeEeeecCCHHHHHHHHHHHH
Confidence            99999999999         89999 7 8999999998763

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=99.79  E-value=2.1e-19  Score=142.86  Aligned_cols=101  Identities=27%  Similarity=0.404  Sum_probs=89.0

Q ss_pred             CCCCceEecCHHHHHHHHHhc--CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcC
Q 018973          117 RDERVKKVHSIEEFDEALRLA--KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIK  194 (348)
Q Consensus       117 ~~~~v~~v~s~~~f~~~l~~~--~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~  194 (348)
                      ..+.+.++.+.++|++.+..+  .+++++|+||++||++|+.+.|.|++++++++++.|+.||+|+   ..+++++|+|+
T Consensus         4 ~~~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~---~~~~~~~~~v~   80 (118)
T 2vm1_A            4 EEGAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAIFLKVDVDE---LKDVAEAYNVE   80 (118)
T ss_dssp             -CCCEEECCSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTT---SHHHHHHTTCC
T ss_pred             CCCceEEecCHHHHHHHHHhcccCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCcEEEEEEccc---CHHHHHHcCCC
Confidence            356789999999999999864  3899999999999999999999999999999999999999998   55699999999


Q ss_pred             CCCeEEEeeccccccccccCCCCccc
Q 018973          195 KVPHFSFYKSMEKIHEEEGIGPDQLM  220 (348)
Q Consensus       195 ~~Pt~~~~~~g~~v~~~~G~~~~~l~  220 (348)
                      ++||+++|++|+.+.++.|.+.+.+.
T Consensus        81 ~~Pt~~~~~~g~~~~~~~g~~~~~l~  106 (118)
T 2vm1_A           81 AMPTFLFIKDGEKVDSVVGGRKDDIH  106 (118)
T ss_dssp             SBSEEEEEETTEEEEEEESCCHHHHH
T ss_pred             cCcEEEEEeCCeEEEEecCCCHHHHH
Confidence            99999999999999888885444443

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=99.79  E-value=3e-19  Score=139.03  Aligned_cols=96  Identities=31%  Similarity=0.417  Sum_probs=85.6

Q ss_pred             ceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHc-CCcEEEEEeCCCchhHHHHHHHcCcCCCCeE
Q 018973          121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQC-NDVEFILVMGDESEKTKELCEREKIKKVPHF  199 (348)
Q Consensus       121 v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~-~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~  199 (348)
                      +.++.+.++|++.+.+.++++++|+||++||++|+.+.|.++++++++ +++.|+.||+++   ..+++++|+|+++||+
T Consensus         2 v~~l~~~~~~~~~l~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~v~~~Pt~   78 (106)
T 1xwb_A            2 VYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDE---CEDIAMEYNISSMPTF   78 (106)
T ss_dssp             EEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTT---CHHHHHHTTCCSSSEE
T ss_pred             ceecCCHHHHHHHHHhcCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCCCeEEEEEeccc---hHHHHHHcCCCcccEE
Confidence            678888899999998767999999999999999999999999999999 569999999998   4569999999999999


Q ss_pred             EEeeccccccccccCCCCcc
Q 018973          200 SFYKSMEKIHEEEGIGPDQL  219 (348)
Q Consensus       200 ~~~~~g~~v~~~~G~~~~~l  219 (348)
                      ++|++|+.+.++.|.+.+.+
T Consensus        79 ~~~~~G~~~~~~~g~~~~~l   98 (106)
T 1xwb_A           79 VFLKNGVKVEEFAGANAKRL   98 (106)
T ss_dssp             EEEETTEEEEEEESCCHHHH
T ss_pred             EEEcCCcEEEEEcCCCHHHH
Confidence            99999999988888544433

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=99.79  E-value=2.4e-19  Score=147.32  Aligned_cols=102  Identities=24%  Similarity=0.390  Sum_probs=89.5

Q ss_pred             CCCCCceEecCHHHHHHHHHhc--CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCc
Q 018973          116 PRDERVKKVHSIEEFDEALRLA--KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKI  193 (348)
Q Consensus       116 ~~~~~v~~v~s~~~f~~~l~~~--~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V  193 (348)
                      ...+.+..+.+.++|++.+..+  ++++++|+||++||++|+.+.|.|++++++++++.|+.||+|+   ..+++++|+|
T Consensus        21 ~~~~~~~~i~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~~v~~~~---~~~~~~~~~v   97 (139)
T 3d22_A           21 LAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYPSLMFLVIDVDE---LSDFSASWEI   97 (139)
T ss_dssp             SSCTTCEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTT---SHHHHHHTTC
T ss_pred             ccCCcEEEeCCHHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCcc---cHHHHHHcCC
Confidence            3456789999999999988643  4899999999999999999999999999999999999999998   5569999999


Q ss_pred             CCCCeEEEeeccccccccccCCCCccc
Q 018973          194 KKVPHFSFYKSMEKIHEEEGIGPDQLM  220 (348)
Q Consensus       194 ~~~Pt~~~~~~g~~v~~~~G~~~~~l~  220 (348)
                      +++||++++++|+.+.++.|.+.+.+.
T Consensus        98 ~~~Pt~~~~~~G~~~~~~~G~~~~~l~  124 (139)
T 3d22_A           98 KATPTFFFLRDGQQVDKLVGANKPELH  124 (139)
T ss_dssp             CEESEEEEEETTEEEEEEESCCHHHHH
T ss_pred             CcccEEEEEcCCeEEEEEeCCCHHHHH
Confidence            999999999999999888886444433

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=99.79  E-value=1.8e-18  Score=138.65  Aligned_cols=110  Identities=29%  Similarity=0.563  Sum_probs=98.0

Q ss_pred             cceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCc
Q 018973          231 SAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVE  310 (348)
Q Consensus       231 ~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~  310 (348)
                      ..++.+.+.+++++.+..+...+++++|+||++||++|+.+.|.|.++++++++ +.|+.+|++++++   ++++|+|.+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~vd~~~~~~---~~~~~~v~~   87 (122)
T 2vlu_A           12 AEVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPN-AVFLKVDVDELKP---IAEQFSVEA   87 (122)
T ss_dssp             CCCEEECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTCHH---HHHHTTCCS
T ss_pred             CcceeccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-cEEEEEECCCCHH---HHHHcCCCc
Confidence            345667788999998876433578999999999999999999999999999976 9999999999887   999999999


Q ss_pred             cceEEEEeCCeEEEEEeCCChHHHHHHHHHHhCC
Q 018973          311 VPTFLFIRDGQIRGRYVGSGKGELIGEILRYQGV  344 (348)
Q Consensus       311 ~PTl~~~~~G~~v~~~~G~~~~~L~~~l~~~~~~  344 (348)
                      +||++++++|+++.++.|...++|.++|+++++.
T Consensus        88 ~Pt~~~~~~G~~~~~~~G~~~~~l~~~l~~~l~~  121 (122)
T 2vlu_A           88 MPTFLFMKEGDVKDRVVGAIKEELTAKVGLHAAA  121 (122)
T ss_dssp             SSEEEEEETTEEEEEEESSCHHHHHHHHHHHHSC
T ss_pred             ccEEEEEeCCEEEEEEeCcCHHHHHHHHHHHhcc
Confidence            9999999999999999998888899999998764

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=99.79  E-value=2.2e-18  Score=134.77  Aligned_cols=104  Identities=21%  Similarity=0.455  Sum_probs=92.1

Q ss_pred             eeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccc
Q 018973          233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVP  312 (348)
Q Consensus       233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~P  312 (348)
                      +..+ +.++|++.+..   .+++++|+||++||++|+.+.|.+.++++++++++.|+.+|++++++   ++++|+|.++|
T Consensus         4 v~~l-~~~~f~~~~~~---~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~v~~~P   76 (108)
T 2trx_A            4 IIHL-TDDSFDTDVLK---ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG---TAPKYGIRGIP   76 (108)
T ss_dssp             EEEC-CTTTHHHHTTT---CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTT---HHHHTTCCSSS
T ss_pred             ceec-chhhHHHHHHh---cCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCCCcEEEEEECCCCHH---HHHHcCCcccC
Confidence            3344 45677766543   47899999999999999999999999999998789999999999888   99999999999


Q ss_pred             eEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973          313 TFLFIRDGQIRGRYVGS-GKGELIGEILRYQG  343 (348)
Q Consensus       313 Tl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~  343 (348)
                      |+++|++|+++.++.|. +.++|.++|+++++
T Consensus        77 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~  108 (108)
T 2trx_A           77 TLLLFKNGEVAATKVGALSKGQLKEFLDANLA  108 (108)
T ss_dssp             EEEEEETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EEEEEeCCEEEEEEecCCCHHHHHHHHHHhhC
Confidence            99999999999999999 99999999998764

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.79  E-value=2.2e-18  Score=134.62  Aligned_cols=99  Identities=28%  Similarity=0.549  Sum_probs=91.9

Q ss_pred             CChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEE
Q 018973          237 HSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLF  316 (348)
Q Consensus       237 ~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~  316 (348)
                      .+.+++++.+..    +++++|+||++||++|+.+.|.+.++++.+++++.|+.+|++++++   ++++|+|.++||+++
T Consensus         9 l~~~~~~~~~~~----~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~i~~~Pt~~~   81 (109)
T 3tco_A            9 LTEENFDEVIRN----NKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQK---IADKYSVLNIPTTLI   81 (109)
T ss_dssp             CCTTTHHHHHHH----SSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHH---HHHHTTCCSSSEEEE
T ss_pred             ecHHHHHHHHhc----CCeEEEEEECCCCHHHHhhhHHHHHHHHHhCCCceEEEEccccCHH---HHHhcCcccCCEEEE
Confidence            366888888864    7999999999999999999999999999998789999999999887   999999999999999


Q ss_pred             EeCCeEEEEEeCC-ChHHHHHHHHHHh
Q 018973          317 IRDGQIRGRYVGS-GKGELIGEILRYQ  342 (348)
Q Consensus       317 ~~~G~~v~~~~G~-~~~~L~~~l~~~~  342 (348)
                      |++|+++.++.|. +.++|.++|++++
T Consensus        82 ~~~g~~~~~~~g~~~~~~l~~~l~~~l  108 (109)
T 3tco_A           82 FVNGQLVDSLVGAVDEDTLESTVNKYL  108 (109)
T ss_dssp             EETTEEEEEEESCCCHHHHHHHHHHHC
T ss_pred             EcCCcEEEeeeccCCHHHHHHHHHHHh
Confidence            9999999999999 9999999999875

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=99.79  E-value=1.3e-18  Score=137.24  Aligned_cols=107  Identities=22%  Similarity=0.377  Sum_probs=91.3

Q ss_pred             eeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHh-CCcEEEEEEECCCchhHHHHHHhCCCCcc
Q 018973          233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQM-AGTVVFARMNGDENDSCMQFLRDMNVVEV  311 (348)
Q Consensus       233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~-~~~v~~~~vd~~~~~~~~~l~~~~~V~~~  311 (348)
                      +..+.+.++|++.+.. ...+++++|+||++||++|+.+.|.+.++++++ .+++.|+.+|++++++   ++++|+|.++
T Consensus         2 v~~i~~~~~~~~~~~~-~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~---~~~~~~v~~~   77 (112)
T 3d6i_A            2 VIEINDQEQFTYLTTT-AAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENSE---ISELFEISAV   77 (112)
T ss_dssp             EEEECCHHHHHHHHTT-TTTTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTTCHH---HHHHTTCCSS
T ss_pred             ccccCCHHHHHHHHhc-ccCCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEecccCHH---HHHHcCCCcc
Confidence            4566777899998875 125799999999999999999999999999985 2459999999999887   9999999999


Q ss_pred             ceEEEEeCCeEEEEEeCCChHHHHHHHHHHhC
Q 018973          312 PTFLFIRDGQIRGRYVGSGKGELIGEILRYQG  343 (348)
Q Consensus       312 PTl~~~~~G~~v~~~~G~~~~~L~~~l~~~~~  343 (348)
                      ||+++|++|+.+.++.|.+.++|.++|+++++
T Consensus        78 Pt~~~~~~G~~~~~~~G~~~~~l~~~l~~~~~  109 (112)
T 3d6i_A           78 PYFIIIHKGTILKELSGADPKEYVSLLEDCKN  109 (112)
T ss_dssp             SEEEEEETTEEEEEECSCCHHHHHHHHHHHHH
T ss_pred             cEEEEEECCEEEEEecCCCHHHHHHHHHHHHh
Confidence            99999999999999999966679999988753

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=99.79  E-value=1.8e-18  Score=137.40  Aligned_cols=111  Identities=28%  Similarity=0.558  Sum_probs=99.3

Q ss_pred             ccceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCC
Q 018973          230 HSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVV  309 (348)
Q Consensus       230 ~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~  309 (348)
                      ...+..+.+.+++++.+......+++++|+||++||++|+.+.|.+.+++++++ ++.|+.+|++++++   ++++|+|.
T Consensus         5 ~~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~---~~~~~~v~   80 (118)
T 2vm1_A            5 EGAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP-GAIFLKVDVDELKD---VAEAYNVE   80 (118)
T ss_dssp             CCCEEECCSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTSHH---HHHHTTCC
T ss_pred             CCceEEecCHHHHHHHHHhcccCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC-CcEEEEEEcccCHH---HHHHcCCC
Confidence            345778888999999988754357899999999999999999999999999986 69999999999887   99999999


Q ss_pred             ccceEEEEeCCeEEEEEeCCChHHHHHHHHHHhCC
Q 018973          310 EVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQGV  344 (348)
Q Consensus       310 ~~PTl~~~~~G~~v~~~~G~~~~~L~~~l~~~~~~  344 (348)
                      ++||++++++|+.+.++.|.+.++|.++|+++++.
T Consensus        81 ~~Pt~~~~~~g~~~~~~~g~~~~~l~~~l~~~~~~  115 (118)
T 2vm1_A           81 AMPTFLFIKDGEKVDSVVGGRKDDIHTKIVALMGS  115 (118)
T ss_dssp             SBSEEEEEETTEEEEEEESCCHHHHHHHHHHHHC-
T ss_pred             cCcEEEEEeCCeEEEEecCCCHHHHHHHHHHHhcc
Confidence            99999999999999999999889999999998754

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=99.78  E-value=2.3e-18  Score=135.74  Aligned_cols=109  Identities=28%  Similarity=0.514  Sum_probs=98.9

Q ss_pred             cceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCc
Q 018973          231 SAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVE  310 (348)
Q Consensus       231 ~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~  310 (348)
                      ..+..+.+.+++++.+..+...+++++|+||++||++|+.+.|.+.+++++++ ++.|+.+|++++++   ++++|+|.+
T Consensus         4 ~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~v~~~~~~~---~~~~~~v~~   79 (113)
T 1ti3_A            4 GQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP-NVTFLKVDVDELKA---VAEEWNVEA   79 (113)
T ss_dssp             CCEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS-SEEEEEEETTTCHH---HHHHHHCSS
T ss_pred             CceeEeccHHHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC-CcEEEEEEccccHH---HHHhCCCCc
Confidence            45778889999999998754468999999999999999999999999999986 69999999999887   999999999


Q ss_pred             cceEEEEeCCeEEEEEeCCChHHHHHHHHHHhC
Q 018973          311 VPTFLFIRDGQIRGRYVGSGKGELIGEILRYQG  343 (348)
Q Consensus       311 ~PTl~~~~~G~~v~~~~G~~~~~L~~~l~~~~~  343 (348)
                      +||++++++|+++.++.|.+.++|.++|+++++
T Consensus        80 ~Pt~~~~~~G~~~~~~~g~~~~~l~~~l~~~~~  112 (113)
T 1ti3_A           80 MPTFIFLKDGKLVDKTVGADKDGLPTLVAKHAT  112 (113)
T ss_dssp             TTEEEEEETTEEEEEEECCCTTHHHHHHHHHHH
T ss_pred             ccEEEEEeCCEEEEEEecCCHHHHHHHHHHhhc
Confidence            999999999999999999988899999998763

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=99.78  E-value=2.1e-18  Score=134.23  Aligned_cols=102  Identities=25%  Similarity=0.456  Sum_probs=91.7

Q ss_pred             ceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCcc
Q 018973          232 AVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEV  311 (348)
Q Consensus       232 ~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~  311 (348)
                      .+..+ +.+++++.+     .+++++|+||++||++|+.+.|.+.++++++++++.|+.+|++++++   ++++|+|.++
T Consensus         4 ~v~~l-~~~~~~~~~-----~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~v~~~   74 (106)
T 3die_A            4 AIVKV-TDADFDSKV-----ESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENPS---TAAKYEVMSI   74 (106)
T ss_dssp             CCEEC-CTTTHHHHS-----CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH---HHHHTTCCSB
T ss_pred             ceEEC-CHHHHHHHh-----cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCcEEEEEECCcCHH---HHHhCCCccc
Confidence            34444 567788877     27999999999999999999999999999998789999999999987   9999999999


Q ss_pred             ceEEEEeCCeEEEEEeCC-ChHHHHHHHHHHh
Q 018973          312 PTFLFIRDGQIRGRYVGS-GKGELIGEILRYQ  342 (348)
Q Consensus       312 PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~  342 (348)
                      ||++++++|+.+.++.|. +.++|.++|++++
T Consensus        75 Pt~~~~~~G~~~~~~~g~~~~~~l~~~l~~~l  106 (106)
T 3die_A           75 PTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL  106 (106)
T ss_dssp             SEEEEEETTEEEEEEESCCCHHHHHHHHHTTC
T ss_pred             CEEEEEeCCeEEEEEeCCCCHHHHHHHHHHhC
Confidence            999999999999999999 9999999998753

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=99.78  E-value=9.3e-19  Score=140.27  Aligned_cols=95  Identities=28%  Similarity=0.395  Sum_probs=85.4

Q ss_pred             CCCceEecCHHHHHHHHHhc--CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCC
Q 018973          118 DERVKKVHSIEEFDEALRLA--KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKK  195 (348)
Q Consensus       118 ~~~v~~v~s~~~f~~~l~~~--~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~  195 (348)
                      ...++.+.+.++|++.+.++  .+++++|+||++||++|+.+.|.|++++++++++.|+.||+|+   ..+++++|+|++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~vd~~~---~~~~~~~~~v~~   87 (122)
T 2vlu_A           11 AAEVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPNAVFLKVDVDE---LKPIAEQFSVEA   87 (122)
T ss_dssp             -CCCEEECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTT---CHHHHHHTTCCS
T ss_pred             CCcceeccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCcEEEEEECCC---CHHHHHHcCCCc
Confidence            34567778999999998864  6899999999999999999999999999999999999999998   556999999999


Q ss_pred             CCeEEEeeccccccccccCC
Q 018973          196 VPHFSFYKSMEKIHEEEGIG  215 (348)
Q Consensus       196 ~Pt~~~~~~g~~v~~~~G~~  215 (348)
                      +||+++|++|+.+.++.|..
T Consensus        88 ~Pt~~~~~~G~~~~~~~G~~  107 (122)
T 2vlu_A           88 MPTFLFMKEGDVKDRVVGAI  107 (122)
T ss_dssp             SSEEEEEETTEEEEEEESSC
T ss_pred             ccEEEEEeCCEEEEEEeCcC
Confidence            99999999999998888754

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.78  E-value=2.9e-19  Score=146.77  Aligned_cols=94  Identities=15%  Similarity=0.150  Sum_probs=84.4

Q ss_pred             CCCCCCceEecCHHHHHHHHHhcC-CCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCc
Q 018973          115 APRDERVKKVHSIEEFDEALRLAK-NKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKI  193 (348)
Q Consensus       115 ~~~~~~v~~v~s~~~f~~~l~~~~-~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V  193 (348)
                      ....+.+.++ +.++|++.+.+++ +++|||+|||+||++|+.+.|.|++++++|+++.|++||+++..      ++|+|
T Consensus         6 ~~~~g~v~~i-~~~~~~~~v~~~~~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~~~~~------~~~~i   78 (135)
T 2dbc_A            6 SGKFGELREI-SGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFPETKFVKAIVNSCI------EHYHD   78 (135)
T ss_dssp             CCCCCSCEEC-CHHHHHHHTTTCCSSCEEEEEECCTTCHHHHHHHHHHHHHHHHCSSEEEEEECCSSSC------SSCCS
T ss_pred             cCCCCceEEc-CHHHHHHHHHhcCCCCEEEEEEECCCChHHHHHHHHHHHHHHHCCCcEEEEEEhhcCc------ccCCC
Confidence            3456779999 9999999987653 58999999999999999999999999999999999999999843      69999


Q ss_pred             CCCCeEEEeeccccccccccCC
Q 018973          194 KKVPHFSFYKSMEKIHEEEGIG  215 (348)
Q Consensus       194 ~~~Pt~~~~~~g~~v~~~~G~~  215 (348)
                      +++||+++|++|+.+.++.|..
T Consensus        79 ~~~Pt~~~~~~G~~v~~~~G~~  100 (135)
T 2dbc_A           79 NCLPTIFVYKNGQIEGKFIGII  100 (135)
T ss_dssp             SCCSEEEEESSSSCSEEEESTT
T ss_pred             CCCCEEEEEECCEEEEEEEeEE
Confidence            9999999999999999998864

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=99.78  E-value=4.9e-19  Score=141.81  Aligned_cols=101  Identities=17%  Similarity=0.278  Sum_probs=87.9

Q ss_pred             CceEec-CHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCe
Q 018973          120 RVKKVH-SIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPH  198 (348)
Q Consensus       120 ~v~~v~-s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt  198 (348)
                      .+..+. +.++|++.+.+ .+++++|+||++||++|+.+.|.|++++++++++.|+.||+++   ..+++++|+|+++||
T Consensus         4 ~v~~~~g~~~~~~~~~~~-~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~~vd~~~---~~~~~~~~~i~~~Pt   79 (118)
T 2f51_A            4 PIVHFNGTHEALLNRIKE-APGLVLVDFFATWCGPCQRLGQILPSIAEANKDVTFIKVDVDK---NGNAADAYGVSSIPA   79 (118)
T ss_dssp             CSEEECSCHHHHHHHHHH-CSSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTT---CHHHHHHTTCCSSSE
T ss_pred             cceEecCCHHHHHHHHHh-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCeEEEEEECCC---CHHHHHhcCCCCCCE
Confidence            467777 89999976654 5899999999999999999999999999999789999999998   456999999999999


Q ss_pred             EEEeec----cccccccccCCCCccccccc
Q 018973          199 FSFYKS----MEKIHEEEGIGPDQLMGDVL  224 (348)
Q Consensus       199 ~~~~~~----g~~v~~~~G~~~~~l~~~v~  224 (348)
                      +++|++    |+.+.++.|...+++...+.
T Consensus        80 ~~~~~~~~~~G~~~~~~~G~~~~~l~~~~~  109 (118)
T 2f51_A           80 LFFVKKEGNEIKTLDQFVGADVSRIKADIE  109 (118)
T ss_dssp             EEEEEEETTEEEEEEEEESCCHHHHHHHHH
T ss_pred             EEEEeCCCCcceEEEeecCCCHHHHHHHHH
Confidence            999998    99999999977666654433

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=99.78  E-value=2.4e-18  Score=136.12  Aligned_cols=100  Identities=20%  Similarity=0.353  Sum_probs=91.2

Q ss_pred             ChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEE
Q 018973          238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFI  317 (348)
Q Consensus       238 s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~  317 (348)
                      +.++|++.+     .+++++|+||++||++|+.+.|.+.++++++++++.|+.+|++++.+   ++++|+|.++||+++|
T Consensus         7 ~~~~~~~~~-----~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~---l~~~~~v~~~Pt~~~~   78 (112)
T 2voc_A            7 TDQSFSAET-----SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQE---TAGKYGVMSIPTLLVL   78 (112)
T ss_dssp             CTTTHHHHH-----SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTTTCEEEEEETTTCCS---HHHHTTCCSBSEEEEE
T ss_pred             cHHHHHHHh-----CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCcEEEEEECCCCHH---HHHHcCCCcccEEEEE
Confidence            447788777     26899999999999999999999999999998789999999999888   9999999999999999


Q ss_pred             eCCeEEEEEeCC-ChHHHHHHHHHHhCCC
Q 018973          318 RDGQIRGRYVGS-GKGELIGEILRYQGVR  345 (348)
Q Consensus       318 ~~G~~v~~~~G~-~~~~L~~~l~~~~~~~  345 (348)
                      ++|+++.++.|. +.++|.+++.++++..
T Consensus        79 ~~G~~~~~~~G~~~~~~l~~~l~~~~~~~  107 (112)
T 2voc_A           79 KDGEVVETSVGFKPKEALQELVNKHLLEH  107 (112)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHHHTTSCSC
T ss_pred             eCCEEEEEEeCCCCHHHHHHHHHHHHHhh
Confidence            999999999999 9999999999887653

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=99.78  E-value=2.2e-18  Score=137.22  Aligned_cols=104  Identities=28%  Similarity=0.585  Sum_probs=94.1

Q ss_pred             ceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCcc
Q 018973          232 AVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEV  311 (348)
Q Consensus       232 ~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~  311 (348)
                      .+..+.+.+++++.+.+.  .+++++|+||++||++|+.+.|.+.++++++  ++.|+.+|++++++   ++++|+|.++
T Consensus        14 ~v~~l~~~~~~~~~l~~~--~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~--~~~~~~vd~~~~~~---~~~~~~v~~~   86 (117)
T 2xc2_A           14 ELIELKQDGDLESLLEQH--KNKLVVVDFFATWCGPCKTIAPLFKELSEKY--DAIFVKVDVDKLEE---TARKYNISAM   86 (117)
T ss_dssp             EEEECCSTTHHHHHHHHT--TTSCEEEEEECTTCHHHHHHHHHHHHHHTTS--SSEEEEEETTTSHH---HHHHTTCCSS
T ss_pred             eeEEeCCHHHHHHHHHhC--CCCEEEEEEECCCCHhHHHHhHHHHHHHHHc--CcEEEEEECCccHH---HHHHcCCCcc
Confidence            367777778999988853  5799999999999999999999999999888  69999999999887   9999999999


Q ss_pred             ceEEEEeCCeEEEEEeCCChHHHHHHHHHHh
Q 018973          312 PTFLFIRDGQIRGRYVGSGKGELIGEILRYQ  342 (348)
Q Consensus       312 PTl~~~~~G~~v~~~~G~~~~~L~~~l~~~~  342 (348)
                      ||++++++|+++.++.|.+.++|.++|++++
T Consensus        87 Pt~~~~~~G~~~~~~~G~~~~~l~~~l~~~l  117 (117)
T 2xc2_A           87 PTFIAIKNGEKVGDVVGASIAKVEDMIKKFI  117 (117)
T ss_dssp             SEEEEEETTEEEEEEESSCHHHHHHHHHHHC
T ss_pred             ceEEEEeCCcEEEEEeCCCHHHHHHHHHHhC
Confidence            9999999999999999998889999998763

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=99.78  E-value=3e-18  Score=136.38  Aligned_cols=104  Identities=27%  Similarity=0.515  Sum_probs=93.2

Q ss_pred             CccceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCC
Q 018973          229 SHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNV  308 (348)
Q Consensus       229 ~~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V  308 (348)
                      ....+..+.+.+.+++.+..    +++++|+||++||++|+.+.|.|.++++++++ +.|+.+|++++++   ++++|+|
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~----~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~-v~~~~vd~~~~~~---l~~~~~v   81 (114)
T 2oe3_A           10 SYTSITKLTNLTEFRNLIKQ----NDKLVIDFYATWCGPCKMMQPHLTKLIQAYPD-VRFVKCDVDESPD---IAKECEV   81 (114)
T ss_dssp             CGGGSCBCCSHHHHHHHHHH----CSEEEEEEECTTCHHHHHTHHHHHHHHHHCTT-SEEEEEETTTCHH---HHHHTTC
T ss_pred             chhheeecCCHHHHHHHHhC----CCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCCCHH---HHHHCCC
Confidence            34556778888999988874    68999999999999999999999999999976 9999999999887   9999999


Q ss_pred             CccceEEEEeCCeEEEEEeCCChHHHHHHHHH
Q 018973          309 VEVPTFLFIRDGQIRGRYVGSGKGELIGEILR  340 (348)
Q Consensus       309 ~~~PTl~~~~~G~~v~~~~G~~~~~L~~~l~~  340 (348)
                      .++||++++++|+++.++.|...++|.++|++
T Consensus        82 ~~~Pt~~~~~~G~~~~~~~G~~~~~l~~~l~~  113 (114)
T 2oe3_A           82 TAMPTFVLGKDGQLIGKIIGANPTALEKGIKD  113 (114)
T ss_dssp             CSBSEEEEEETTEEEEEEESSCHHHHHHHHHT
T ss_pred             CcccEEEEEeCCeEEEEEeCCCHHHHHHHHHh
Confidence            99999999999999999999887888888864

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=99.78  E-value=3.8e-18  Score=132.29  Aligned_cols=103  Identities=34%  Similarity=0.633  Sum_probs=93.0

Q ss_pred             eecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccce
Q 018973          234 VQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPT  313 (348)
Q Consensus       234 ~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PT  313 (348)
                      ..+.+.+++++.+.+.  .+++++|+||++||++|+.+.|.+.+++++++ ++.|+.+|++++++   ++++|+|.++||
T Consensus         2 ~~i~~~~~~~~~l~~~--~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~---~~~~~~v~~~Pt   75 (104)
T 2vim_A            2 RVLATAADLEKLINEN--KGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP-EVEFAKVDVDQNEE---AAAKYSVTAMPT   75 (104)
T ss_dssp             EECCSHHHHHHHHHTT--TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTCHH---HHHHTTCCSSSE
T ss_pred             eecCCHHHHHHHHHhc--CCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC-CCEEEEEeccCCHH---HHHHcCCccccE
Confidence            4566778899988753  57899999999999999999999999999986 69999999999887   999999999999


Q ss_pred             EEEEeCCeEEEEEeCCChHHHHHHHHHHh
Q 018973          314 FLFIRDGQIRGRYVGSGKGELIGEILRYQ  342 (348)
Q Consensus       314 l~~~~~G~~v~~~~G~~~~~L~~~l~~~~  342 (348)
                      ++++++|+.+.++.|.+.++|.++|++++
T Consensus        76 ~~~~~~g~~~~~~~G~~~~~l~~~l~~~l  104 (104)
T 2vim_A           76 FVFIKDGKEVDRFSGANETKLRETITRHK  104 (104)
T ss_dssp             EEEEETTEEEEEEESSCHHHHHHHHHHHC
T ss_pred             EEEEeCCcEEEEEeCCCHHHHHHHHHhhC
Confidence            99999999999999998889999998763

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=99.78  E-value=6.4e-19  Score=139.38  Aligned_cols=92  Identities=34%  Similarity=0.487  Sum_probs=83.0

Q ss_pred             CCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCe
Q 018973          119 ERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPH  198 (348)
Q Consensus       119 ~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt  198 (348)
                      +......+.++|+++++  ++++++|+||++||++|+.+.|.|++++++++++.|+.||+++   ..+++++|+|+++||
T Consensus         8 ~~~~~~~~~~~f~~~~~--~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~---~~~~~~~~~v~~~Pt   82 (112)
T 1syr_A            8 HMVKIVTSQAEFDSIIS--QNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDE---VSEVTEKENITSMPT   82 (112)
T ss_dssp             -CCEEECSHHHHHHHHH--HCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTT---THHHHHHTTCCSSSE
T ss_pred             eeEEEECCHHHHHHHHc--cCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCC---CHHHHHHcCCCcccE
Confidence            34556679999999997  6899999999999999999999999999999999999999998   556999999999999


Q ss_pred             EEEeeccccccccccCC
Q 018973          199 FSFYKSMEKIHEEEGIG  215 (348)
Q Consensus       199 ~~~~~~g~~v~~~~G~~  215 (348)
                      +++|++|+.+.++.|.+
T Consensus        83 ~~~~~~G~~~~~~~G~~   99 (112)
T 1syr_A           83 FKVYKNGSSVDTLLGAN   99 (112)
T ss_dssp             EEEEETTEEEEEEESCC
T ss_pred             EEEEECCcEEEEEeCCC
Confidence            99999999988887763

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=99.78  E-value=3.2e-18  Score=138.69  Aligned_cols=104  Identities=26%  Similarity=0.501  Sum_probs=94.7

Q ss_pred             ceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCcc
Q 018973          232 AVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEV  311 (348)
Q Consensus       232 ~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~  311 (348)
                      ++..+.+.++|++.+.    .+++++|+||++||++|+.+.|.|.+++++++ ++.|+.+|++++++   ++++|+|.++
T Consensus        20 mv~~l~~~~~f~~~~~----~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~~~~---l~~~~~v~~~   91 (125)
T 1r26_A           20 SVVDVYSVEQFRNIMS----EDILTVAWFTAVWCGPCKTIERPMEKIAYEFP-TVKFAKVDADNNSE---IVSKCRVLQL   91 (125)
T ss_dssp             CCEEECCHHHHHHHHH----SSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT-TSEEEEEETTTCHH---HHHHTTCCSS
T ss_pred             ceEECCCHHHHHHHHc----cCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC-CCEEEEEECCCCHH---HHHHcCCCcc
Confidence            4677777799999884    47999999999999999999999999999985 59999999999887   9999999999


Q ss_pred             ceEEEEeCCeEEEEEeCCChHHHHHHHHHHhC
Q 018973          312 PTFLFIRDGQIRGRYVGSGKGELIGEILRYQG  343 (348)
Q Consensus       312 PTl~~~~~G~~v~~~~G~~~~~L~~~l~~~~~  343 (348)
                      ||+++|++|+++.++.|.+.++|.++|+++++
T Consensus        92 Pt~~i~~~G~~~~~~~G~~~~~l~~~l~~~l~  123 (125)
T 1r26_A           92 PTFIIARSGKMLGHVIGANPGMLRQKLRDIIK  123 (125)
T ss_dssp             SEEEEEETTEEEEEEESSCHHHHHHHHHHHHH
T ss_pred             cEEEEEeCCeEEEEEeCCCHHHHHHHHHHHhc
Confidence            99999999999999999988999999998764

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=99.78  E-value=1.6e-19  Score=147.85  Aligned_cols=100  Identities=19%  Similarity=0.314  Sum_probs=85.9

Q ss_pred             CCCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCC
Q 018973          117 RDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKV  196 (348)
Q Consensus       117 ~~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~  196 (348)
                      ..+.+.++.+.++|++++.+.++++|||+|||+||++|+.+.|.|+++++++ ++.|+.||+++   ..+++++|+|+++
T Consensus        18 ~~~~v~~l~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~-~v~~~~vd~~~---~~~l~~~~~v~~~   93 (133)
T 3cxg_A           18 GQSIYIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY-YVTLVDIDVDI---HPKLNDQHNIKAL   93 (133)
T ss_dssp             TTEEEEECCCTTHHHHHHTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE-ECEEEEEETTT---CHHHHHHTTCCSS
T ss_pred             CCccEEEecChhHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc-CEEEEEEeccc---hHHHHHhcCCCCC
Confidence            3456899988999999998777899999999999999999999999999888 79999999998   5569999999999


Q ss_pred             CeEEEee--ccc--cccccccCCCCccc
Q 018973          197 PHFSFYK--SME--KIHEEEGIGPDQLM  220 (348)
Q Consensus       197 Pt~~~~~--~g~--~v~~~~G~~~~~l~  220 (348)
                      ||+++|+  +|+  .+.++.|...+++.
T Consensus        94 Pt~~~~~~~~g~g~~~~~~~G~~~~~l~  121 (133)
T 3cxg_A           94 PTFEFYFNLNNEWVLVHTVEGANQNDIE  121 (133)
T ss_dssp             SEEEEEEEETTEEEEEEEEESCCHHHHH
T ss_pred             CEEEEEEecCCCeEEEEEEcCCCHHHHH
Confidence            9999997  887  78888776444333

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.77  E-value=4e-18  Score=168.37  Aligned_cols=212  Identities=15%  Similarity=0.234  Sum_probs=148.6

Q ss_pred             CCceEecCHHHHHHHHHhcCCCEEEEEEeCC-CCH---HHHhhhhHHHHHHHHcCC----cEEEEEeCCCchhHHHHHHH
Q 018973          119 ERVKKVHSIEEFDEALRLAKNKLVVVEFAAS-RSL---DSSKIYPFMVDLSRQCND----VEFILVMGDESEKTKELCER  190 (348)
Q Consensus       119 ~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~-wC~---~C~~~~p~l~~la~~~~~----v~f~~vd~d~~~~~~~l~~~  190 (348)
                      +.+.++ |.+++.+..    +.+.++.|+.. ...   .+..+...+.+++++|.+    +.|+.+|.++   ....++.
T Consensus       218 p~v~e~-t~~n~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~vA~~~~~k~~~i~F~~~D~~~---~~~~l~~  289 (481)
T 3f8u_A          218 GICPHM-TEDNKDLIQ----GKDLLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKT---FSHELSD  289 (481)
T ss_dssp             TTSCEE-CTTTHHHHT----TSSEEEEEECCCTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEETTT---THHHHGG
T ss_pred             CCcccc-ChhHHHHhc----CCCceEEEEecccccchhhHHHHHHHHHHHHHHhcCCCceEEEEEEcHHH---HHHHHHH
Confidence            345555 566666554    23445555543 222   233356778889988854    9999999988   5558899


Q ss_pred             cCcC----CCCeEEEeecccccccccc-CCCC--ccccccc--------ccC------CCccceeecCChhhHHHHhhhc
Q 018973          191 EKIK----KVPHFSFYKSMEKIHEEEG-IGPD--QLMGDVL--------YYG------DSHSAVVQLHSKEDVEKLIDDH  249 (348)
Q Consensus       191 ~~V~----~~Pt~~~~~~g~~v~~~~G-~~~~--~l~~~v~--------~~~------~~~~~v~~~~s~~~~~~~l~~~  249 (348)
                      ||+.    ..|.++++..+.....+.+ ...+  .+...+.        .+.      ......+...+.+++++.+.+ 
T Consensus       290 ~gl~~~~~~~P~~~i~~~~~~ky~~~~~~t~e~~~l~~f~~~~~~g~~~~~~~s~~~p~~~~~~v~~~~~~~~~~~~~~-  368 (481)
T 3f8u_A          290 FGLESTAGEIPVVAIRTAKGEKFVMQEEFSRDGKALERFLQDYFDGNLKRYLKSEPIPESNDGPVKVVVAENFDEIVNN-  368 (481)
T ss_dssp             GTCCCCTTCSCEEEEECSSSCEEECCSCCCTTSHHHHHHHHHHHHTCCCCCCCCCCCCSCCCSSSEEECTTTHHHHHTC-
T ss_pred             cCCCcccCCCcEEEEEcCCCcccCCCcccCccHHHHHHHHHHHhcCCcccccccCCCCCCCCCCeEEecccCHHHHhhc-
Confidence            9998    6899998864322222322 2222  2222111        000      001112233356778888764 


Q ss_pred             ccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC--cEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeE--EEE
Q 018973          250 KVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG--TVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQI--RGR  325 (348)
Q Consensus       250 ~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~--v~~  325 (348)
                        .+++++|+||++||++|+.+.|.|.++++.+++  ++.++.+|++.++    ++++|+|.++||+++|++|..  +.+
T Consensus       369 --~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~v~~~~id~~~~~----~~~~~~v~~~Pt~~~~~~~~~~~~~~  442 (481)
T 3f8u_A          369 --ENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAND----VPSPYEVRGFPTIYFSPANKKLNPKK  442 (481)
T ss_dssp             --TTCEEEEEEECTTBHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTSSC----CCTTCCCCSSSEEEEECTTCTTSCEE
T ss_pred             --CCCcEEEEEecCcChhHHHhhHHHHHHHHHhccCCCEEEEEEECCchh----hHhhCCCcccCEEEEEeCCCeEeeeE
Confidence              479999999999999999999999999999975  5999999999884    888999999999999987765  678


Q ss_pred             EeCC-ChHHHHHHHHHHhCCC
Q 018973          326 YVGS-GKGELIGEILRYQGVR  345 (348)
Q Consensus       326 ~~G~-~~~~L~~~l~~~~~~~  345 (348)
                      +.|. +.++|.++|+++.+..
T Consensus       443 ~~G~~~~~~l~~~l~~~~~~~  463 (481)
T 3f8u_A          443 YEGGRELSDFISYLQREATNP  463 (481)
T ss_dssp             CCSCCSHHHHHHHHHHHCSSC
T ss_pred             eCCCCCHHHHHHHHHHhcCCc
Confidence            8998 9999999999987643

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=99.77  E-value=1.7e-18  Score=136.04  Aligned_cols=92  Identities=22%  Similarity=0.324  Sum_probs=82.8

Q ss_pred             CCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCC
Q 018973          118 DERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKV  196 (348)
Q Consensus       118 ~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~  196 (348)
                      ...+.++ +.++|++.+.+ .+++++|+||++||++|+.+.|.++++++++++ +.|+.||+++   .++++++|+|+++
T Consensus         3 ~~~v~~l-~~~~~~~~~~~-~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~---~~~l~~~~~v~~~   77 (111)
T 3gnj_A            3 AMSLEKL-DTNTFEQLIYD-EGKACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEE---EKTLFQRFSLKGV   77 (111)
T ss_dssp             CCCSEEC-CHHHHHHHHTT-SCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTT---CHHHHHHTTCCSS
T ss_pred             CCcceec-CHHHHHHHHHh-cCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCCceEEEEEECCc---ChhHHHhcCCCcC
Confidence            3457777 99999999843 579999999999999999999999999999986 9999999999   5569999999999


Q ss_pred             CeEEEeeccccccccccC
Q 018973          197 PHFSFYKSMEKIHEEEGI  214 (348)
Q Consensus       197 Pt~~~~~~g~~v~~~~G~  214 (348)
                      ||+++|++|+.+.++.|.
T Consensus        78 Pt~~~~~~g~~~~~~~g~   95 (111)
T 3gnj_A           78 PQILYFKDGEYKGKMAGD   95 (111)
T ss_dssp             CEEEEEETTEEEEEEESS
T ss_pred             CEEEEEECCEEEEEEecc
Confidence            999999999999888774

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=99.77  E-value=1.9e-19  Score=142.23  Aligned_cols=96  Identities=14%  Similarity=0.207  Sum_probs=83.2

Q ss_pred             CceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeE
Q 018973          120 RVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHF  199 (348)
Q Consensus       120 ~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~  199 (348)
                      .+..+.+.++| +.+.  ++++++|+||++||++|+.+.|.|++++++++++.|+.||+++   ..+++++|+|+++||+
T Consensus         3 ~~~~~~~~~~f-~~~~--~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~v~~~~vd~~~---~~~l~~~~~v~~~Pt~   76 (110)
T 2l6c_A            3 AIRDITTEAGM-AHFE--GLSDAIVFFHKNLCPHCKNMEKVLDKFGARAPQVAISSVDSEA---RPELMKELGFERVPTL   76 (110)
T ss_dssp             CCSBCGGGCSH-HHHT--TCSEEEEEEECSSCSTHHHHHHHHHHHHTTCTTSCEEEEEGGG---CHHHHHHTTCCSSCEE
T ss_pred             ceeecCCHHHH-HHHH--cCCCEEEEEECCCCHhHHHHHHHHHHHHHHCCCcEEEEEcCcC---CHHHHHHcCCcccCEE
Confidence            34566688999 6665  5799999999999999999999999999999999999999988   5569999999999999


Q ss_pred             EEeeccccccccccC-CCCcccc
Q 018973          200 SFYKSMEKIHEEEGI-GPDQLMG  221 (348)
Q Consensus       200 ~~~~~g~~v~~~~G~-~~~~l~~  221 (348)
                      ++|++|+.+.++.|. +.+++..
T Consensus        77 ~~~~~G~~v~~~~G~~~~~~l~~   99 (110)
T 2l6c_A           77 VFIRDGKVAKVFSGIMNPRELQA   99 (110)
T ss_dssp             EEEESSSEEEEEESCCCHHHHHH
T ss_pred             EEEECCEEEEEEcCCCCHHHHHH
Confidence            999999999999884 4455543

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=99.77  E-value=3.9e-18  Score=143.45  Aligned_cols=105  Identities=21%  Similarity=0.416  Sum_probs=93.7

Q ss_pred             eeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccc
Q 018973          233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVP  312 (348)
Q Consensus       233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~P  312 (348)
                      +..+ +.++|++.+.    .+++++|+||++||++|+.+.|.|+++++++.+++.|+.||++++++   ++++|+|.++|
T Consensus        49 ~~~l-~~~~f~~~~~----~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~---l~~~~~i~~~P  120 (155)
T 2ppt_A           49 VAGI-DPAILARAER----DDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPA---VAGRHRIQGIP  120 (155)
T ss_dssp             EEEC-CHHHHHHHTT----CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTSTH---HHHHTTCCSSS
T ss_pred             CccC-CHHHHHHHHh----CCCcEEEEEECCCCHHHHHHHHHHHHHHHHccCCEEEEEEeCCccHH---HHHHcCCCcCC
Confidence            3444 4677888773    47899999999999999999999999999998789999999999887   99999999999


Q ss_pred             eEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhCCC
Q 018973          313 TFLFIRDGQIRGRYVGS-GKGELIGEILRYQGVR  345 (348)
Q Consensus       313 Tl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~~~  345 (348)
                      |+++|++|+++.++.|. +.++|.++|+++++.+
T Consensus       121 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~~~  154 (155)
T 2ppt_A          121 AFILFHKGRELARAAGARPASELVGFVRGKLGAR  154 (155)
T ss_dssp             EEEEEETTEEEEEEESCCCHHHHHHHHHHHHC--
T ss_pred             EEEEEeCCeEEEEecCCCCHHHHHHHHHHHhccC
Confidence            99999999999999999 9999999999988753

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=99.77  E-value=5e-18  Score=142.19  Aligned_cols=108  Identities=21%  Similarity=0.373  Sum_probs=97.8

Q ss_pred             cceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCc
Q 018973          231 SAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVE  310 (348)
Q Consensus       231 ~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~  310 (348)
                      ..+..+.+.+++++.+...  .+++++|+||++||++|+.+.|.|.+++++++ ++.|+.||++++++   ++++|+|.+
T Consensus        12 ~~v~~l~~~~~~~~~~~~~--~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~~~~~~---l~~~~~v~~   85 (153)
T 2wz9_A           12 AAVEEVGSAGQFEELLRLK--AKSLLVVHFWAPWAPQCAQMNEVMAELAKELP-QVSFVKLEAEGVPE---VSEKYEISS   85 (153)
T ss_dssp             CCSEEECSHHHHHHHHHHT--TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTSHH---HHHHTTCCS
T ss_pred             CCeEEcCCHHHHHHHHHhc--CCCeEEEEEECCCCHhHHHHHHHHHHHHHHcC-CeEEEEEECCCCHH---HHHHcCCCC
Confidence            4567788889999988764  47999999999999999999999999999984 59999999999887   999999999


Q ss_pred             cceEEEEeCCeEEEEEeCCChHHHHHHHHHHhCC
Q 018973          311 VPTFLFIRDGQIRGRYVGSGKGELIGEILRYQGV  344 (348)
Q Consensus       311 ~PTl~~~~~G~~v~~~~G~~~~~L~~~l~~~~~~  344 (348)
                      +||+++|++|+++.++.|.+.++|.++|+++++.
T Consensus        86 ~Pt~~~~~~G~~~~~~~G~~~~~l~~~i~~~l~~  119 (153)
T 2wz9_A           86 VPTFLFFKNSQKIDRLDGAHAPELTKKVQRHASS  119 (153)
T ss_dssp             SSEEEEEETTEEEEEEESSCHHHHHHHHHHHSCT
T ss_pred             CCEEEEEECCEEEEEEeCCCHHHHHHHHHHHhcc
Confidence            9999999999999999999888999999998764

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=99.77  E-value=3.4e-18  Score=140.33  Aligned_cols=110  Identities=27%  Similarity=0.484  Sum_probs=98.4

Q ss_pred             ccceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCC
Q 018973          230 HSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVV  309 (348)
Q Consensus       230 ~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~  309 (348)
                      ...+..+.+.++|++.+......+++++|+||++||++|+.+.|.|.+++++++ ++.|+.||++++.+   ++++|+|.
T Consensus        23 ~~~~~~i~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~-~v~~~~v~~~~~~~---~~~~~~v~   98 (139)
T 3d22_A           23 GGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYP-SLMFLVIDVDELSD---FSASWEIK   98 (139)
T ss_dssp             CTTCEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTSHH---HHHHTTCC
T ss_pred             CCcEEEeCCHHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-CCEEEEEeCcccHH---HHHHcCCC
Confidence            456778888899999887543358899999999999999999999999999985 59999999999887   99999999


Q ss_pred             ccceEEEEeCCeEEEEEeCCChHHHHHHHHHHhC
Q 018973          310 EVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQG  343 (348)
Q Consensus       310 ~~PTl~~~~~G~~v~~~~G~~~~~L~~~l~~~~~  343 (348)
                      ++||++++++|+++.++.|.+.++|.++|+++++
T Consensus        99 ~~Pt~~~~~~G~~~~~~~G~~~~~l~~~l~~~~~  132 (139)
T 3d22_A           99 ATPTFFFLRDGQQVDKLVGANKPELHKKITAILD  132 (139)
T ss_dssp             EESEEEEEETTEEEEEEESCCHHHHHHHHHHHHH
T ss_pred             cccEEEEEcCCeEEEEEeCCCHHHHHHHHHHHhc
Confidence            9999999999999999999988999999998764

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.77  E-value=1.1e-18  Score=143.29  Aligned_cols=99  Identities=22%  Similarity=0.286  Sum_probs=86.6

Q ss_pred             CCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchhHHHHHHHcCcC-
Q 018973          118 DERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEKTKELCEREKIK-  194 (348)
Q Consensus       118 ~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~~~~l~~~~~V~-  194 (348)
                      .+.+..+ +.++|++.+.+.++++|+|+|||+||++|+.+.|.|++++++|.  ++.|+.||+++   .++++++|+|+ 
T Consensus         6 ~~~v~~l-~~~~f~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~---~~~~~~~~~v~~   81 (137)
T 2dj0_A            6 SGYIKYF-NDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGR---YTDVSTRYKVST   81 (137)
T ss_dssp             CSCCEEC-CTTHHHHHHHHSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTT---CHHHHHHTTCCC
T ss_pred             CceEEEc-cHhhHHHHHhcCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCcc---CHHHHHHccCcc
Confidence            3456666 78999999987777899999999999999999999999999996  59999999998   55699999999 


Q ss_pred             -----CCCeEEEeeccccccccccCC-CCccc
Q 018973          195 -----KVPHFSFYKSMEKIHEEEGIG-PDQLM  220 (348)
Q Consensus       195 -----~~Pt~~~~~~g~~v~~~~G~~-~~~l~  220 (348)
                           ++||+++|++|+.+.++.|.. .+.+.
T Consensus        82 ~~~~~~~Pt~~~~~~G~~~~~~~G~~~~~~l~  113 (137)
T 2dj0_A           82 SPLTKQLPTLILFQGGKEAMRRPQIDKKGRAV  113 (137)
T ss_dssp             CSSSSCSSEEEEESSSSEEEEESCBCSSSCBC
T ss_pred             cCCcCCCCEEEEEECCEEEEEecCcCchHHHH
Confidence                 999999999999999998854 34444

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=99.77  E-value=3.8e-18  Score=133.25  Aligned_cols=100  Identities=16%  Similarity=0.428  Sum_probs=90.5

Q ss_pred             ChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEE
Q 018973          238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFI  317 (348)
Q Consensus       238 s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~  317 (348)
                      +.+++++.+..   .+++++|+||++||++|+.+.|.+.++++++++++.++.+|++++++   ++++|+|.++||++++
T Consensus         7 ~~~~~~~~~~~---~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~v~~~Pt~~~~   80 (107)
T 1dby_A            7 NDDTFKNVVLE---SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPN---VASEYGIRSIPTIMVF   80 (107)
T ss_dssp             CHHHHHHHTTT---CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH---HHHHHTCCSSCEEEEE
T ss_pred             cHHHHHHHHhc---CCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCCceEEEEEECCCCHH---HHHHCCCCcCCEEEEE
Confidence            55778776654   47899999999999999999999999999998789999999999887   9999999999999999


Q ss_pred             eCCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973          318 RDGQIRGRYVGS-GKGELIGEILRYQG  343 (348)
Q Consensus       318 ~~G~~v~~~~G~-~~~~L~~~l~~~~~  343 (348)
                      ++|+++.++.|. +.++|.++|+++++
T Consensus        81 ~~G~~~~~~~G~~~~~~l~~~l~~~l~  107 (107)
T 1dby_A           81 KGGKKCETIIGAVPKATIVQTVEKYLN  107 (107)
T ss_dssp             SSSSEEEEEESCCCHHHHHHHHHHHCC
T ss_pred             eCCEEEEEEeCCCCHHHHHHHHHHHhC
Confidence            999999999999 89999999998753

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=99.77  E-value=4.2e-18  Score=134.22  Aligned_cols=104  Identities=18%  Similarity=0.437  Sum_probs=91.1

Q ss_pred             eeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccc
Q 018973          233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVP  312 (348)
Q Consensus       233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~P  312 (348)
                      +..+ +.+++++.+.+   .+++++|+||++||++|+.+.|.+.++++++++++.|+.+|++++++   ++++|+|.++|
T Consensus         7 v~~l-~~~~~~~~~~~---~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~v~~~P   79 (112)
T 1t00_A            7 LKHV-TDDSFEQDVLK---NDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPG---TAAKYGVMSIP   79 (112)
T ss_dssp             CEEE-CTTTHHHHTTT---CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH---HHHHTTCCSSS
T ss_pred             EEec-chhhHHHHHhh---CCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcCCeEEEEEEcCCCHH---HHHhCCCCccc
Confidence            3444 34666665543   47899999999999999999999999999997779999999999887   99999999999


Q ss_pred             eEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973          313 TFLFIRDGQIRGRYVGS-GKGELIGEILRYQG  343 (348)
Q Consensus       313 Tl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~  343 (348)
                      |++++++|+++.++.|. +.++|.++|++++.
T Consensus        80 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~  111 (112)
T 1t00_A           80 TLNVYQGGEVAKTIVGAKPKAAIVRDLEDFIA  111 (112)
T ss_dssp             EEEEEETTEEEEEEESCCCHHHHHHHTHHHHC
T ss_pred             EEEEEeCCEEEEEEeCCCCHHHHHHHHHHHhh
Confidence            99999999999999999 89999999998764

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=99.77  E-value=7.5e-18  Score=133.03  Aligned_cols=105  Identities=16%  Similarity=0.297  Sum_probs=93.5

Q ss_pred             eeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccc
Q 018973          233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVP  312 (348)
Q Consensus       233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~P  312 (348)
                      +..+ +.++|++.+..   .+++++|+||++||++|+.+.|.++++++.+++++.|+.+|++++++   ++++|+|.++|
T Consensus         9 v~~l-~~~~~~~~~~~---~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~---~~~~~~v~~~P   81 (115)
T 1thx_A            9 VITI-TDAEFESEVLK---AEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPT---TVKKYKVEGVP   81 (115)
T ss_dssp             EEEC-CGGGHHHHTTT---CSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHH---HHHHTTCCSSS
T ss_pred             eEEe-eccchhhHhhc---CCceEEEEEECCCCHHHHHhHHHHHHHHHHhCCcEEEEEEEcCCCHH---HHHHcCCCcee
Confidence            4555 56778876643   47899999999999999999999999999998779999999999887   99999999999


Q ss_pred             eEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhCC
Q 018973          313 TFLFIRDGQIRGRYVGS-GKGELIGEILRYQGV  344 (348)
Q Consensus       313 Tl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~~  344 (348)
                      |+++|++|+++.++.|. +.++|.++|+++++.
T Consensus        82 t~~~~~~G~~~~~~~g~~~~~~l~~~l~~~l~~  114 (115)
T 1thx_A           82 ALRLVKGEQILDSTEGVISKDKLLSFLDTHLNN  114 (115)
T ss_dssp             EEEEEETTEEEEEEESCCCHHHHHHHHHHHHC-
T ss_pred             EEEEEcCCEEEEEecCCCCHHHHHHHHHHHhcC
Confidence            99999999999999999 999999999998764

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=99.77  E-value=5.7e-18  Score=133.43  Aligned_cols=105  Identities=23%  Similarity=0.477  Sum_probs=91.4

Q ss_pred             ceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECC-CchhHHHHHHhCCCCc
Q 018973          232 AVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGD-ENDSCMQFLRDMNVVE  310 (348)
Q Consensus       232 ~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~-~~~~~~~l~~~~~V~~  310 (348)
                      .+..+. .+++++.+.+.  .+++++|+||++||++|+.+.|.|.++++.+++ +.|+.+|++ ++.+   ++++|+|.+
T Consensus         6 ~v~~l~-~~~~~~~~~~~--~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~---~~~~~~v~~   78 (111)
T 2pu9_C            6 KVTEVN-KDTFWPIVKAA--GDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLD-VIFLKLDCNQENKT---LAKELGIRV   78 (111)
T ss_dssp             SEEEEC-TTTHHHHHTTC--TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSSTTHH---HHHHHCCSB
T ss_pred             ccEEec-hHHHHHHHHhc--CCCEEEEEEECCcCHhHHHHCHHHHHHHHHCCC-eEEEEEecCcchHH---HHHHcCCCe
Confidence            345554 47788888753  478999999999999999999999999999864 999999998 5665   999999999


Q ss_pred             cceEEEEeCCeEEEEEeCCChHHHHHHHHHHhC
Q 018973          311 VPTFLFIRDGQIRGRYVGSGKGELIGEILRYQG  343 (348)
Q Consensus       311 ~PTl~~~~~G~~v~~~~G~~~~~L~~~l~~~~~  343 (348)
                      +||++++++|+++.++.|.+.++|.++|+++++
T Consensus        79 ~Pt~~~~~~G~~~~~~~G~~~~~l~~~l~~~~~  111 (111)
T 2pu9_C           79 VPTFKILKENSVVGEVTGAKYDKLLEAIQAARS  111 (111)
T ss_dssp             SSEEEEESSSSEEEEEESSCHHHHHHHHHHHHC
T ss_pred             eeEEEEEeCCcEEEEEcCCCHHHHHHHHHHhhC
Confidence            999999999999999999988899999988753

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=99.77  E-value=1.7e-17  Score=157.81  Aligned_cols=208  Identities=13%  Similarity=0.177  Sum_probs=157.2

Q ss_pred             CCCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCC
Q 018973          117 RDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKV  196 (348)
Q Consensus       117 ~~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~  196 (348)
                      ....+..+.+.+++++.++  .+..+||-|+.+-+.++   ...+.++|+.+.++.|+.++-      +++|++|+|+. 
T Consensus        15 ~~~~~~~l~~~~~~~~~~~--~~~~~vvgff~~~~~~~---~~~f~~~A~~~~~~~F~~t~~------~~v~~~~~v~~-   82 (361)
T 3uem_A           15 GSEFATTLPDGAAAESLVE--SSEVAVIGFFKDVESDS---AKQFLQAAEAIDDIPFGITSN------SDVFSKYQLDK-   82 (361)
T ss_dssp             CCSSSEECCSHHHHHHHHH--TSSEEEEEECSCTTSHH---HHHHHHHHHHCSSSCEEEECC------HHHHHHTTCSS-
T ss_pred             ccccceecCCHHHHHHHHh--cCCcEEEEEEcCCCchH---HHHHHHHHhcCCCceEEEECc------HHHHHHhCCCC-
Confidence            3456788999999999998  67889999998776655   357889999987799987752      35999999998 


Q ss_pred             CeEEEeec-ccccccccc-CCCCcccccccccCCCccceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhH
Q 018973          197 PHFSFYKS-MEKIHEEEG-IGPDQLMGDVLYYGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPT  274 (348)
Q Consensus       197 Pt~~~~~~-g~~v~~~~G-~~~~~l~~~v~~~~~~~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~  274 (348)
                      |++++|+. .+....+.| .+.+.|...+...   ..+.+..-+.+++.+.+..   ..++++|+||++||++|+++.+.
T Consensus        83 ~~i~lfk~f~~~~~~~~g~~~~~~i~~fi~~~---~~p~v~~~~~~~~~~~~~~---~~~~~~v~F~~~~~~~~~~~~~~  156 (361)
T 3uem_A           83 DGVVLFKKFDEGRNNFEGEVTKENLLDFIKHN---QLPLVIEFTEQTAPKIFGG---EIKTHILLFLPKSVSDYDGKLSN  156 (361)
T ss_dssp             SEEEEEESSTTSEEECCSCCCHHHHHHHHHHH---SSCSEEECSTTTHHHHHSC---SCCEEEEEECCSSSSSHHHHHHH
T ss_pred             CeEEEEEecCCCccccCCcCCHHHHHHHHHHc---CCCcceecCcccHHHHhcC---CCCcEEEEEEeCCchhHHHHHHH
Confidence            99999975 222233444 2233333322221   1233333456777777764   35678999999999999999999


Q ss_pred             HHHHHHHhCCcEEEEEEECC--CchhHHHHHHhCCCCc--cceEEEEeCCeEEEEEe---CC-ChHHHHHHHHHHhCCC
Q 018973          275 VIKLSRQMAGTVVFARMNGD--ENDSCMQFLRDMNVVE--VPTFLFIRDGQIRGRYV---GS-GKGELIGEILRYQGVR  345 (348)
Q Consensus       275 l~~la~~~~~~v~~~~vd~~--~~~~~~~l~~~~~V~~--~PTl~~~~~G~~v~~~~---G~-~~~~L~~~l~~~~~~~  345 (348)
                      |.++++++++++.|+.+|++  ++..   +++.|||.+  +|+++++..|+...+|.   |. +.+.|.+|++++++.+
T Consensus       157 ~~~~A~~~~~~i~f~~vd~~~~~~~~---~~~~fgi~~~~~P~~~~~~~~~~~~ky~~~~~~~~~~~l~~fi~~~l~g~  232 (361)
T 3uem_A          157 FKTAAESFKGKILFIFIDSDHTDNQR---ILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGK  232 (361)
T ss_dssp             HHHHHGGGTTTCEEEEECTTSGGGHH---HHHHTTCCTTTCSEEEEEECC--CCEECCSSCCCCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHccCceEEEEecCChHHHHH---HHHHcCCCccCCccEEEEEcCCcccccCCCccccCHHHHHHHHHHHhcCC
Confidence            99999999988999999999  4555   999999988  99999998876556665   56 9999999999987543

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=99.77  E-value=1.2e-18  Score=137.14  Aligned_cols=90  Identities=16%  Similarity=0.248  Sum_probs=79.8

Q ss_pred             CCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhH-HHHHHHcCcC-CC
Q 018973          119 ERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKT-KELCEREKIK-KV  196 (348)
Q Consensus       119 ~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~-~~l~~~~~V~-~~  196 (348)
                      +...++.|.++|++++++  +++|+|+|+|+|||||+.+.|.|++++++ +++.|++||+|+..+. .+++++|||+ ..
T Consensus         6 ~~~~~i~s~e~f~~ii~~--~~~vvi~khatwCgpc~~~~~~~e~~~~~-~~v~~~~vdVde~r~~Sn~IA~~~~V~h~s   82 (112)
T 3iv4_A            6 GVAIKLSSIDQFEQVIEE--NKYVFVLKHSETCPISANAYDQFNKFLYE-RDMDGYYLIVQQERDLSDYIAKKTNVKHES   82 (112)
T ss_dssp             GCEEECCSHHHHHHHHHH--CSEEEEEEECTTCHHHHHHHHHHHHHHHH-HTCCEEEEEGGGGHHHHHHHHHHHTCCCCS
T ss_pred             cceeecCCHHHHHHHHhc--CCCEEEEEECCcCHhHHHHHHHHHHHhcc-CCceEEEEEeecCchhhHHHHHHhCCccCC
Confidence            567899999999999984  99999999999999999999999999987 7799999999984321 3489999999 59


Q ss_pred             CeEEEeecccccccc
Q 018973          197 PHFSFYKSMEKIHEE  211 (348)
Q Consensus       197 Pt~~~~~~g~~v~~~  211 (348)
                      ||+++|++|+.+.+.
T Consensus        83 Pq~il~k~G~~v~~~   97 (112)
T 3iv4_A           83 PQAFYFVNGEMVWNR   97 (112)
T ss_dssp             SEEEEEETTEEEEEE
T ss_pred             CeEEEEECCEEEEEe
Confidence            999999999998753

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=99.77  E-value=3.6e-18  Score=138.86  Aligned_cols=104  Identities=20%  Similarity=0.419  Sum_probs=92.6

Q ss_pred             eeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccc
Q 018973          233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVP  312 (348)
Q Consensus       233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~P  312 (348)
                      +..+ +.++|++.+..   .+++++|+||++||++|+.+.|.+.++++++++++.|+.+|++++++   ++++|+|.++|
T Consensus        24 v~~l-~~~~f~~~~~~---~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~~~~~~---l~~~~~v~~~P   96 (128)
T 2o8v_B           24 IIHL-TDDSFDTDVLK---ADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPG---TAPKYGIRGIP   96 (128)
T ss_dssp             SEEE-CTTTHHHHTTT---CSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTTTEEEEEEETTTCCT---TSGGGTCCSSS
T ss_pred             cEec-ChhhHHHHHHh---cCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHH---HHHHcCCCccC
Confidence            4445 55778766543   47999999999999999999999999999998789999999999887   99999999999


Q ss_pred             eEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973          313 TFLFIRDGQIRGRYVGS-GKGELIGEILRYQG  343 (348)
Q Consensus       313 Tl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~  343 (348)
                      |+++|++|+++.++.|. +.++|.++|+++++
T Consensus        97 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~  128 (128)
T 2o8v_B           97 TLLLFKNGEVAATKVGALSKGQLKEFLDANLA  128 (128)
T ss_dssp             EEEEEETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EEEEEeCCEEEEEEcCCCCHHHHHHHHHHhhC
Confidence            99999999999999999 99999999998764

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=99.76  E-value=3.8e-18  Score=132.73  Aligned_cols=98  Identities=20%  Similarity=0.434  Sum_probs=87.8

Q ss_pred             ChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEE
Q 018973          238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFI  317 (348)
Q Consensus       238 s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~  317 (348)
                      +.+++++.+.    .+++++|+||++||++|+.+.|.++++++++++++.++.+|++++.+   ++++|+|.++||++++
T Consensus         6 ~~~~~~~~~~----~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~---~~~~~~v~~~Pt~~~~   78 (105)
T 1nsw_A            6 TDANFQQAIQ----GDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPE---TTSQFGIMSIPTLILF   78 (105)
T ss_dssp             CTTTHHHHHS----SSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTTCEEEEEETTTCHH---HHHHTTCCSSSEEEEE
T ss_pred             cHHhHHHHHh----CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECcCCHH---HHHHcCCccccEEEEE
Confidence            3466776654    46899999999999999999999999999998779999999999887   9999999999999999


Q ss_pred             eCCeEEEEEeCC-ChHHHHHHHHHHh
Q 018973          318 RDGQIRGRYVGS-GKGELIGEILRYQ  342 (348)
Q Consensus       318 ~~G~~v~~~~G~-~~~~L~~~l~~~~  342 (348)
                      ++|+++.++.|. +.++|.++|++++
T Consensus        79 ~~G~~~~~~~G~~~~~~l~~~l~~~l  104 (105)
T 1nsw_A           79 KGGRPVKQLIGYQPKEQLEAQLADVL  104 (105)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHTTTTT
T ss_pred             eCCeEEEEEecCCCHHHHHHHHHHHh
Confidence            999999999999 8899999987764

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=99.76  E-value=8.5e-18  Score=130.95  Aligned_cols=98  Identities=26%  Similarity=0.483  Sum_probs=88.7

Q ss_pred             ChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEE
Q 018973          238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFI  317 (348)
Q Consensus       238 s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~  317 (348)
                      +.+++++.+..   .+++++|+||++||++|+.+.|.+.++++++++++.|+.+|++++++   ++++|+|.++||+++|
T Consensus         8 ~~~~~~~~~~~---~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~v~~~Pt~~~~   81 (107)
T 2i4a_A            8 SDSSFDQDVLK---ASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPE---TPNAYQVRSIPTLMLV   81 (107)
T ss_dssp             CTTTHHHHTTT---CSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTSEEEEEEETTTCCH---HHHHTTCCSSSEEEEE
T ss_pred             chhhhhHHHHh---CCCEEEEEEECCCChhHHHHhHHHHHHHHHhCCcEEEEEEECCCCHH---HHHhcCCCccCEEEEE
Confidence            45677766543   47899999999999999999999999999998789999999999887   9999999999999999


Q ss_pred             eCCeEEEEEeCC-ChHHHHHHHHHH
Q 018973          318 RDGQIRGRYVGS-GKGELIGEILRY  341 (348)
Q Consensus       318 ~~G~~v~~~~G~-~~~~L~~~l~~~  341 (348)
                      ++|+.+.++.|. +.++|.++|+++
T Consensus        82 ~~G~~~~~~~G~~~~~~l~~~l~~~  106 (107)
T 2i4a_A           82 RDGKVIDKKVGALPKSQLKAWVESA  106 (107)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHHHHT
T ss_pred             eCCEEEEEecCCCCHHHHHHHHHhc
Confidence            999999999999 999999999875

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=99.76  E-value=4.1e-18  Score=139.42  Aligned_cols=107  Identities=17%  Similarity=0.315  Sum_probs=95.3

Q ss_pred             ccceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCC
Q 018973          230 HSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVV  309 (348)
Q Consensus       230 ~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~  309 (348)
                      ...++.+.+.+++++.+...  .+++++|+||++||++|+.+.|.|+++++++  ++.|+.+|++++.+   ++++|+|.
T Consensus        19 ~~~v~~l~~~~~~~~~l~~~--~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~--~v~~~~vd~~~~~~---l~~~~~v~   91 (133)
T 3cxg_A           19 QSIYIELKNTGSLNQVFSST--QNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY--YVTLVDIDVDIHPK---LNDQHNIK   91 (133)
T ss_dssp             TEEEEECCCTTHHHHHHTC---CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE--ECEEEEEETTTCHH---HHHHTTCC
T ss_pred             CccEEEecChhHHHHHHHhc--CCCEEEEEEECCCCHHHHHHHHHHHHHHHhc--CEEEEEEeccchHH---HHHhcCCC
Confidence            45678888889999988764  4789999999999999999999999998877  58999999999887   99999999


Q ss_pred             ccceEEEEe--CCe--EEEEEeCCChHHHHHHHHHHhC
Q 018973          310 EVPTFLFIR--DGQ--IRGRYVGSGKGELIGEILRYQG  343 (348)
Q Consensus       310 ~~PTl~~~~--~G~--~v~~~~G~~~~~L~~~l~~~~~  343 (348)
                      ++||+++|+  +|+  ++.++.|.+.++|.++|+++++
T Consensus        92 ~~Pt~~~~~~~~g~g~~~~~~~G~~~~~l~~~l~~~l~  129 (133)
T 3cxg_A           92 ALPTFEFYFNLNNEWVLVHTVEGANQNDIEKAFQKYCL  129 (133)
T ss_dssp             SSSEEEEEEEETTEEEEEEEEESCCHHHHHHHHHHHSE
T ss_pred             CCCEEEEEEecCCCeEEEEEEcCCCHHHHHHHHHHHHH
Confidence            999999997  888  8899999988999999998864

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=99.76  E-value=2.7e-18  Score=138.93  Aligned_cols=87  Identities=23%  Similarity=0.279  Sum_probs=75.7

Q ss_pred             CCCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHc------CCcEEEEEeCCCchhHHHHHHH
Q 018973          117 RDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQC------NDVEFILVMGDESEKTKELCER  190 (348)
Q Consensus       117 ~~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~------~~v~f~~vd~d~~~~~~~l~~~  190 (348)
                      ....+.++ +.++|++.+.+ .+++|+|+|||+||++|+.+.|.|+++++++      +++.|++||+++   .++++++
T Consensus        13 ~~~~v~~l-~~~~f~~~~~~-~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~---~~~l~~~   87 (127)
T 3h79_A           13 RPSRVVEL-TDETFDSIVMD-PEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEK---YPDVIER   87 (127)
T ss_dssp             CCCCCEEC-CTTTHHHHHTC-TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTT---CHHHHHH
T ss_pred             CCCceEEC-ChhhHHHHHhC-CCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccc---cHhHHHh
Confidence            34567777 88999998863 4899999999999999999999999998764      249999999998   5669999


Q ss_pred             cCcCCCCeEEEeeccccc
Q 018973          191 EKIKKVPHFSFYKSMEKI  208 (348)
Q Consensus       191 ~~V~~~Pt~~~~~~g~~v  208 (348)
                      |+|+++||+++|++|+.+
T Consensus        88 ~~v~~~Pt~~~~~~g~~~  105 (127)
T 3h79_A           88 MRVSGFPTMRYYTRIDKQ  105 (127)
T ss_dssp             TTCCSSSEEEEECSSCSS
T ss_pred             cCCccCCEEEEEeCCCCC
Confidence            999999999999988765

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=99.76  E-value=1.3e-18  Score=144.17  Aligned_cols=92  Identities=14%  Similarity=0.172  Sum_probs=81.0

Q ss_pred             CceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC-CcEEEEEeCCCchhHHHHHHHcCcCCCCe
Q 018973          120 RVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN-DVEFILVMGDESEKTKELCEREKIKKVPH  198 (348)
Q Consensus       120 ~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~-~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt  198 (348)
                      .+..+.+.++|++.+.+..+++|+|+|||+||++|+.+.|.|+++++++. ++.|++||+|+.+   +++++|+|+++||
T Consensus         4 ~l~~i~~~~~~~~~v~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~---~~~~~~~i~~~Pt   80 (142)
T 1qgv_A            4 MLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVP---DFNKMYELYDPCT   80 (142)
T ss_dssp             SSCBCCSHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCC---TTTTSSCSCSSCE
T ss_pred             HHhccCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEccccCH---HHHHHcCCCCCCE
Confidence            35677889999988875468999999999999999999999999999995 4999999999854   4999999999999


Q ss_pred             EEEeeccccccccccC
Q 018973          199 FSFYKSMEKIHEEEGI  214 (348)
Q Consensus       199 ~~~~~~g~~v~~~~G~  214 (348)
                      +++|++|+.+....|.
T Consensus        81 ~~~~~~G~~v~~~~g~   96 (142)
T 1qgv_A           81 VMFFFRNKHIMIDLGT   96 (142)
T ss_dssp             EEEEETTEEEEEECC-
T ss_pred             EEEEECCcEEEEecCC
Confidence            9999999998766663

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=99.76  E-value=8.4e-18  Score=130.55  Aligned_cols=99  Identities=22%  Similarity=0.520  Sum_probs=89.5

Q ss_pred             ChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEE
Q 018973          238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFI  317 (348)
Q Consensus       238 s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~  317 (348)
                      +.+++++.+..   .+++++|+||++||++|+.+.|.+.++++++++++.++.+|++++++   ++++|+|.++||++++
T Consensus         6 ~~~~~~~~~~~---~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~v~~~Pt~~~~   79 (105)
T 1fb6_A            6 NDSSWKEFVLE---SEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPG---IATQYNIRSIPTVLFF   79 (105)
T ss_dssp             CTTTHHHHTTT---CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH---HHHHTTCCSSSEEEEE
T ss_pred             hhhhHHHHHhc---CCCcEEEEEECCCChHHHHHHHHHHHHHHHhcCceEEEEEcCcchHH---HHHhCCCCcccEEEEE
Confidence            45677776654   47899999999999999999999999999998789999999999887   9999999999999999


Q ss_pred             eCCeEEEEEeCC-ChHHHHHHHHHHh
Q 018973          318 RDGQIRGRYVGS-GKGELIGEILRYQ  342 (348)
Q Consensus       318 ~~G~~v~~~~G~-~~~~L~~~l~~~~  342 (348)
                      ++|+.+.++.|. +.++|.++|++++
T Consensus        80 ~~g~~~~~~~G~~~~~~l~~~l~~~l  105 (105)
T 1fb6_A           80 KNGERKESIIGAVPKSTLTDSIEKYL  105 (105)
T ss_dssp             ETTEEEEEEEECCCHHHHHHHHHHHC
T ss_pred             eCCeEEEEEecCCCHHHHHHHHHhhC
Confidence            999999999999 8999999998764

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=99.76  E-value=5e-18  Score=140.69  Aligned_cols=105  Identities=15%  Similarity=0.206  Sum_probs=90.2

Q ss_pred             eeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccc
Q 018973          233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVP  312 (348)
Q Consensus       233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~P  312 (348)
                      +..+.+.+++++.+.+.  .+++++|+||++||++|+.+.|.|+++++++.+++.|+.||++++++   ++++|+|.++|
T Consensus         5 l~~i~~~~~~~~~v~~~--~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~~~~~~i~~~P   79 (142)
T 1qgv_A            5 LPHLHNGWQVDQAILSE--EDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPD---FNKMYELYDPC   79 (142)
T ss_dssp             SCBCCSHHHHHHHHHTC--SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCT---TTTSSCSCSSC
T ss_pred             HhccCCHHHHHHHHHhc--CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEccccCHH---HHHHcCCCCCC
Confidence            44566788898777542  47999999999999999999999999999997789999999999988   99999999999


Q ss_pred             eEEEEeCCeEEE---------EEeCC--ChHHHHHHHHHHh
Q 018973          313 TFLFIRDGQIRG---------RYVGS--GKGELIGEILRYQ  342 (348)
Q Consensus       313 Tl~~~~~G~~v~---------~~~G~--~~~~L~~~l~~~~  342 (348)
                      |+++|++|+.+.         ++.|.  +.++|.++|++++
T Consensus        80 t~~~~~~G~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~~  120 (142)
T 1qgv_A           80 TVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVY  120 (142)
T ss_dssp             EEEEEETTEEEEEECC------CCSCCSCHHHHHHHHHHHH
T ss_pred             EEEEEECCcEEEEecCCCCcceeeeecCcHHHHHHHHHHHH
Confidence            999999999987         35555  4888998888764

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=99.76  E-value=6.5e-18  Score=139.30  Aligned_cols=104  Identities=19%  Similarity=0.274  Sum_probs=92.4

Q ss_pred             ceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCcc
Q 018973          232 AVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEV  311 (348)
Q Consensus       232 ~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~  311 (348)
                      .+..+ +.++|++.+..   .+++++|+||++||++|+.+.|.|.++++.+++++.|+.||++++++   ++++|+|.++
T Consensus         7 ~v~~l-~~~~f~~~~~~---~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~---l~~~~~v~~~   79 (140)
T 3hz4_A            7 SIIEF-EDMTWSQQVED---SKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRINIATNPW---TAEKYGVQGT   79 (140)
T ss_dssp             TEEEE-CHHHHHHHTTT---CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEETTTCHH---HHHHHTCCEE
T ss_pred             ceEEc-chHhHHHHHHh---CCCcEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCcCHh---HHHHCCCCcC
Confidence            34444 56777755444   47999999999999999999999999999998889999999999887   9999999999


Q ss_pred             ceEEEEeCCeEEEEEeCC-ChHHHHHHHHHHh
Q 018973          312 PTFLFIRDGQIRGRYVGS-GKGELIGEILRYQ  342 (348)
Q Consensus       312 PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~  342 (348)
                      ||+++|++|+.+.++.|. +.++|.++|++++
T Consensus        80 Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l  111 (140)
T 3hz4_A           80 PTFKFFCHGRPVWEQVGQIYPSILKNAVRDML  111 (140)
T ss_dssp             SEEEEEETTEEEEEEESSCCHHHHHHHHHHHH
T ss_pred             CEEEEEeCCcEEEEEcCCCCHHHHHHHHHHHh
Confidence            999999999999999999 8999999999875

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=99.76  E-value=1.1e-17  Score=130.55  Aligned_cols=100  Identities=21%  Similarity=0.453  Sum_probs=89.8

Q ss_pred             ChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEE
Q 018973          238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFI  317 (348)
Q Consensus       238 s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~  317 (348)
                      +.+++++.+..    +++++|+||++||++|+.+.|.+.++++.+++++.|+.+|++++++   ++++|+|.++||+++|
T Consensus         7 ~~~~~~~~~~~----~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~v~~~Pt~~~~   79 (109)
T 2yzu_A            7 TDQNFDETLGQ----HPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDENPK---TAMRYRVMSIPTVILF   79 (109)
T ss_dssp             CTTTHHHHHHH----CSEEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHH---HHHHTTCCSSSEEEEE
T ss_pred             cHhHHHHHhcC----CCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCceEEEEEECCCCHh---HHHhCCCCcCCEEEEE
Confidence            45677766653    6899999999999999999999999999998789999999999887   9999999999999999


Q ss_pred             eCCeEEEEEeCC-ChHHHHHHHHHHhCC
Q 018973          318 RDGQIRGRYVGS-GKGELIGEILRYQGV  344 (348)
Q Consensus       318 ~~G~~v~~~~G~-~~~~L~~~l~~~~~~  344 (348)
                      ++|+.+.++.|. +.++|.++|+++++.
T Consensus        80 ~~g~~~~~~~g~~~~~~l~~~l~~~l~~  107 (109)
T 2yzu_A           80 KDGQPVEVLVGAQPKRNYQAKIEKHLPA  107 (109)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHHHTTC--
T ss_pred             eCCcEeeeEeCCCCHHHHHHHHHHHhhh
Confidence            999999999999 899999999988764

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=99.76  E-value=7e-18  Score=140.17  Aligned_cols=104  Identities=22%  Similarity=0.427  Sum_probs=93.9

Q ss_pred             eeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccc
Q 018973          233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVP  312 (348)
Q Consensus       233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~P  312 (348)
                      +..+ +.+++++.+.    .+++++|+||++||++|+.+.|.|+++++++.+++.|+.||++++++   ++++|+|.++|
T Consensus        40 v~~l-~~~~~~~~~~----~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~---l~~~~~v~~~P  111 (148)
T 3p2a_A           40 VINA-TAETLDKLLQ----DDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPA---LSTRFRIRSIP  111 (148)
T ss_dssp             CEEC-CTTTHHHHTT----CSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH---HHHHTTCCSSS
T ss_pred             ceec-CHHHHHHHHh----cCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCCceEEEEEECcCCHH---HHHHCCCCccC
Confidence            3443 4578888873    57999999999999999999999999999998789999999999987   99999999999


Q ss_pred             eEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhCC
Q 018973          313 TFLFIRDGQIRGRYVGS-GKGELIGEILRYQGV  344 (348)
Q Consensus       313 Tl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~~  344 (348)
                      |+++|++|+++.++.|. +.++|.++|+++++.
T Consensus       112 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~~  144 (148)
T 3p2a_A          112 TIMLYRNGKMIDMLNGAVPKAPFDNWLDEQLSR  144 (148)
T ss_dssp             EEEEEETTEEEEEESSCCCHHHHHHHHHHHHHS
T ss_pred             EEEEEECCeEEEEEeCCCCHHHHHHHHHHHhcc
Confidence            99999999999999999 999999999998754

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=99.76  E-value=5.8e-18  Score=135.97  Aligned_cols=106  Identities=26%  Similarity=0.500  Sum_probs=96.2

Q ss_pred             ccceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCc-EEEEEEECCCchhHHHHHHhCCC
Q 018973          230 HSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGT-VVFARMNGDENDSCMQFLRDMNV  308 (348)
Q Consensus       230 ~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~~~~~~~~~l~~~~~V  308 (348)
                      ...+..+.+.++|++.+.    .+++++|+||++||++|+.+.|.|.++++.++++ +.|+.+|++++++   ++++|+|
T Consensus        14 ~~~~~~i~~~~~f~~~l~----~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~~~~---~~~~~~v   86 (121)
T 2j23_A           14 RGSVQVISSYDQFKQVTG----GDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQ---IAQEVGI   86 (121)
T ss_dssp             CCCEEECCSHHHHHHHHS----SSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTTCHH---HHHHHTC
T ss_pred             CcceEEcCCHHHHHHHHc----CCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcCCHH---HHHHcCC
Confidence            345777889999999884    4789999999999999999999999999988655 9999999999887   9999999


Q ss_pred             CccceEEEEeCCeEEEEEeCCChHHHHHHHHHHh
Q 018973          309 VEVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQ  342 (348)
Q Consensus       309 ~~~PTl~~~~~G~~v~~~~G~~~~~L~~~l~~~~  342 (348)
                      .++||+++|++|+++.++.|.+.++|.++|++++
T Consensus        87 ~~~Pt~~~~~~G~~~~~~~G~~~~~l~~~l~~~l  120 (121)
T 2j23_A           87 RAMPTFVFFKNGQKIDTVVGADPSKLQAAITQHS  120 (121)
T ss_dssp             CSSSEEEEEETTEEEEEEESSCHHHHHHHHHHHT
T ss_pred             CcccEEEEEECCeEEeeEcCCCHHHHHHHHHHhh
Confidence            9999999999999999999998899999998875

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=99.75  E-value=1.3e-17  Score=131.70  Aligned_cols=103  Identities=23%  Similarity=0.476  Sum_probs=92.5

Q ss_pred             ceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCcc
Q 018973          232 AVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEV  311 (348)
Q Consensus       232 ~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~  311 (348)
                      ......+.++|++.++    .+++++|+||++||++|+.+.|.+.+++++++ ++.|+.+|++++++   ++++|+|.++
T Consensus         9 ~~~~~~~~~~f~~~~~----~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~-~v~~~~vd~~~~~~---~~~~~~v~~~   80 (112)
T 1syr_A            9 MVKIVTSQAEFDSIIS----QNELVIVDFFAEWCGPCKRIAPFYEECSKTYT-KMVFIKVDVDEVSE---VTEKENITSM   80 (112)
T ss_dssp             CCEEECSHHHHHHHHH----HCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTTHH---HHHHTTCCSS
T ss_pred             eEEEECCHHHHHHHHc----cCCeEEEEEECCCCHHHHHHHHHHHHHHHHcC-CCEEEEEECCCCHH---HHHHcCCCcc
Confidence            3445567889999886    37999999999999999999999999999986 49999999999887   9999999999


Q ss_pred             ceEEEEeCCeEEEEEeCCChHHHHHHHHHHh
Q 018973          312 PTFLFIRDGQIRGRYVGSGKGELIGEILRYQ  342 (348)
Q Consensus       312 PTl~~~~~G~~v~~~~G~~~~~L~~~l~~~~  342 (348)
                      ||++++++|+.+.++.|.+.++|.++|++++
T Consensus        81 Pt~~~~~~G~~~~~~~G~~~~~l~~~l~~~l  111 (112)
T 1syr_A           81 PTFKVYKNGSSVDTLLGANDSALKQLIEKYA  111 (112)
T ss_dssp             SEEEEEETTEEEEEEESCCHHHHHHHHHTTC
T ss_pred             cEEEEEECCcEEEEEeCCCHHHHHHHHHHhh
Confidence            9999999999999999998899999998764

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=99.75  E-value=1.3e-17  Score=130.81  Aligned_cols=101  Identities=21%  Similarity=0.333  Sum_probs=90.1

Q ss_pred             ceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhC---CcEEEEEEECCCchhHHHHHHhCCC
Q 018973          232 AVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMA---GTVVFARMNGDENDSCMQFLRDMNV  308 (348)
Q Consensus       232 ~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~---~~v~~~~vd~~~~~~~~~l~~~~~V  308 (348)
                      .+..+ +.+++++.+.     +++++|+||++||++|+.+.|.+.++++.+.   +.+.++.+|++++++   ++++|+|
T Consensus         6 ~v~~l-~~~~~~~~~~-----~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~---l~~~~~v   76 (111)
T 3uvt_A            6 TVLAL-TENNFDDTIA-----EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERN---ICSKYSV   76 (111)
T ss_dssp             CSEEC-CTTTHHHHHH-----SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCHH---HHHHTTC
T ss_pred             cceEc-ChhhHHHHhc-----CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccHh---HHHhcCC
Confidence            34444 6678888876     4799999999999999999999999998874   359999999999887   9999999


Q ss_pred             CccceEEEEeCCeEEEEEeCC-ChHHHHHHHHHH
Q 018973          309 VEVPTFLFIRDGQIRGRYVGS-GKGELIGEILRY  341 (348)
Q Consensus       309 ~~~PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~~  341 (348)
                      .++||+++|++|+.+.++.|. +.++|.++|+++
T Consensus        77 ~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~l~~~  110 (111)
T 3uvt_A           77 RGYPTLLLFRGGKKVSEHSGGRDLDSLHRFVLSQ  110 (111)
T ss_dssp             CSSSEEEEEETTEEEEEECSCCSHHHHHHHHHHH
T ss_pred             CcccEEEEEeCCcEEEeccCCcCHHHHHHHHHhc
Confidence            999999999999999999999 999999999875

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.75  E-value=3.9e-18  Score=133.22  Aligned_cols=90  Identities=19%  Similarity=0.283  Sum_probs=81.1

Q ss_pred             CCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCC
Q 018973          119 ERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVP  197 (348)
Q Consensus       119 ~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~P  197 (348)
                      +.+..+ +.++|++.+.  ++++++|+||++||++|+.+.|.++++++++++ +.|+.||+++   .++++++|+|+++|
T Consensus         4 ~~v~~l-~~~~~~~~~~--~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~i~~~P   77 (109)
T 3tco_A            4 DVTLVL-TEENFDEVIR--NNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDE---NQKIADKYSVLNIP   77 (109)
T ss_dssp             CCCEEC-CTTTHHHHHH--HSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTT---CHHHHHHTTCCSSS
T ss_pred             CeEEEe-cHHHHHHHHh--cCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCCCceEEEEcccc---CHHHHHhcCcccCC
Confidence            345555 8999999997  589999999999999999999999999999985 9999999998   55699999999999


Q ss_pred             eEEEeeccccccccccC
Q 018973          198 HFSFYKSMEKIHEEEGI  214 (348)
Q Consensus       198 t~~~~~~g~~v~~~~G~  214 (348)
                      |+++|++|+.+.++.|.
T Consensus        78 t~~~~~~g~~~~~~~g~   94 (109)
T 3tco_A           78 TTLIFVNGQLVDSLVGA   94 (109)
T ss_dssp             EEEEEETTEEEEEEESC
T ss_pred             EEEEEcCCcEEEeeecc
Confidence            99999999999888874

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=99.75  E-value=7.9e-19  Score=141.07  Aligned_cols=96  Identities=26%  Similarity=0.389  Sum_probs=86.8

Q ss_pred             CCCCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCCCchhHHHHHHHcCc
Q 018973          116 PRDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGDESEKTKELCEREKI  193 (348)
Q Consensus       116 ~~~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d~~~~~~~l~~~~~V  193 (348)
                      .+...+..|.+.++|++++.  ++++++|+||++||++|+.+.|.|+++++++++  +.|+.||+|+   ..+++++|+|
T Consensus        12 ~~~~~~~~i~~~~~f~~~l~--~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~---~~~~~~~~~v   86 (121)
T 2j23_A           12 VPRGSVQVISSYDQFKQVTG--GDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDE---QSQIAQEVGI   86 (121)
T ss_dssp             CCCCCEEECCSHHHHHHHHS--SSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTT---CHHHHHHHTC
T ss_pred             cCCcceEEcCCHHHHHHHHc--CCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcC---CHHHHHHcCC
Confidence            45668999999999999994  789999999999999999999999999999876  9999999998   4569999999


Q ss_pred             CCCCeEEEeeccccccccccCCC
Q 018973          194 KKVPHFSFYKSMEKIHEEEGIGP  216 (348)
Q Consensus       194 ~~~Pt~~~~~~g~~v~~~~G~~~  216 (348)
                      +++||+++|++|+.+.++.|.+.
T Consensus        87 ~~~Pt~~~~~~G~~~~~~~G~~~  109 (121)
T 2j23_A           87 RAMPTFVFFKNGQKIDTVVGADP  109 (121)
T ss_dssp             CSSSEEEEEETTEEEEEEESSCH
T ss_pred             CcccEEEEEECCeEEeeEcCCCH
Confidence            99999999999999988877633

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=99.75  E-value=1.8e-17  Score=128.07  Aligned_cols=98  Identities=23%  Similarity=0.515  Sum_probs=89.9

Q ss_pred             ChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEE
Q 018973          238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFI  317 (348)
Q Consensus       238 s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~  317 (348)
                      +.+++++.+.    .+++++|+||++||++|+.+.|.+.++++.+++ +.++.+|++++.+   ++++|++.++||++++
T Consensus         5 ~~~~~~~~~~----~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~---~~~~~~v~~~Pt~~~~   76 (104)
T 2e0q_A            5 DSKNFDSFLA----SHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ-VGFGKLNSDENPD---IAARYGVMSLPTVIFF   76 (104)
T ss_dssp             CTTTHHHHHH----HSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTCHH---HHHHTTCCSSCEEEEE
T ss_pred             CHHHHHHHHh----cCCcEEEEEECCCChhHHHHhHHHHHHHHHcCC-ceEEEEECCCCHH---HHHhCCccccCEEEEE
Confidence            4577888875    378999999999999999999999999999976 9999999999887   9999999999999999


Q ss_pred             eCCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973          318 RDGQIRGRYVGS-GKGELIGEILRYQG  343 (348)
Q Consensus       318 ~~G~~v~~~~G~-~~~~L~~~l~~~~~  343 (348)
                      ++|+.+.++.|. +.++|.++|+++++
T Consensus        77 ~~g~~~~~~~g~~~~~~l~~~l~~~l~  103 (104)
T 2e0q_A           77 KDGEPVDEIIGAVPREEIEIRIKNLLG  103 (104)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHHHHHHT
T ss_pred             ECCeEhhhccCCCCHHHHHHHHHHHhc
Confidence            999999999999 99999999998875

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=99.75  E-value=5.2e-18  Score=131.97  Aligned_cols=89  Identities=17%  Similarity=0.316  Sum_probs=81.3

Q ss_pred             CCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCC
Q 018973          119 ERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVP  197 (348)
Q Consensus       119 ~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~P  197 (348)
                      ..+.++ +.++|++.+   ++++++|+||++||++|+.+.|.++++++++++ +.|+.||+|+   .++++++|+|+++|
T Consensus         3 ~~v~~l-~~~~~~~~~---~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~v~~~P   75 (106)
T 3die_A            3 MAIVKV-TDADFDSKV---ESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDE---NPSTAAKYEVMSIP   75 (106)
T ss_dssp             CCCEEC-CTTTHHHHS---CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTTCEEEEEETTT---CHHHHHHTTCCSBS
T ss_pred             cceEEC-CHHHHHHHh---cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCcEEEEEECCc---CHHHHHhCCCcccC
Confidence            356676 889999998   689999999999999999999999999999987 9999999999   55699999999999


Q ss_pred             eEEEeeccccccccccC
Q 018973          198 HFSFYKSMEKIHEEEGI  214 (348)
Q Consensus       198 t~~~~~~g~~v~~~~G~  214 (348)
                      |+++|++|+.+.++.|.
T Consensus        76 t~~~~~~G~~~~~~~g~   92 (106)
T 3die_A           76 TLIVFKDGQPVDKVVGF   92 (106)
T ss_dssp             EEEEEETTEEEEEEESC
T ss_pred             EEEEEeCCeEEEEEeCC
Confidence            99999999999888774

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=99.75  E-value=2.5e-18  Score=136.00  Aligned_cols=88  Identities=18%  Similarity=0.295  Sum_probs=79.0

Q ss_pred             ceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC-CcEEEEEeCCCchhHHHHHHHcCcCCCCeE
Q 018973          121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN-DVEFILVMGDESEKTKELCEREKIKKVPHF  199 (348)
Q Consensus       121 v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~-~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~  199 (348)
                      +.++ +.++|++.+   ++++++|+||++||++|+.+.|.|++++++++ ++.|+.||+|+.+   +++++|+|+++||+
T Consensus         3 v~~l-~~~~~~~~~---~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~---~l~~~~~v~~~Pt~   75 (112)
T 2voc_A            3 IVKA-TDQSFSAET---SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQ---ETAGKYGVMSIPTL   75 (112)
T ss_dssp             CEEC-CTTTHHHHH---SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTTTCEEEEEETTTCC---SHHHHTTCCSBSEE
T ss_pred             eEEe-cHHHHHHHh---CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCcEEEEEECCCCH---HHHHHcCCCcccEE
Confidence            5565 778999988   68999999999999999999999999999997 4999999999854   49999999999999


Q ss_pred             EEeeccccccccccCC
Q 018973          200 SFYKSMEKIHEEEGIG  215 (348)
Q Consensus       200 ~~~~~g~~v~~~~G~~  215 (348)
                      ++|++|+.+.++.|..
T Consensus        76 ~~~~~G~~~~~~~G~~   91 (112)
T 2voc_A           76 LVLKDGEVVETSVGFK   91 (112)
T ss_dssp             EEEETTEEEEEEESCC
T ss_pred             EEEeCCEEEEEEeCCC
Confidence            9999999998888853

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.75  E-value=1.3e-17  Score=136.74  Aligned_cols=106  Identities=18%  Similarity=0.390  Sum_probs=93.3

Q ss_pred             ceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCc---EEEEEEECCCchhHHHHHHhCCC
Q 018973          232 AVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGT---VVFARMNGDENDSCMQFLRDMNV  308 (348)
Q Consensus       232 ~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~---v~~~~vd~~~~~~~~~l~~~~~V  308 (348)
                      .+..+ +.++|++.+.    .+++++|+||++||++|+.+.|.|.++++.+.++   +.|+.+|++++.+   ++++|+|
T Consensus        18 ~v~~l-~~~~~~~~~~----~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~---~~~~~~v   89 (140)
T 2dj1_A           18 GVWVL-NDGNFDNFVA----DKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASM---LASKFDV   89 (140)
T ss_dssp             TEEEC-CTTTHHHHHT----TCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTCHH---HHHHTTC
T ss_pred             CCEEc-ChHhHHHHHh----cCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcccHH---HHHHCCC
Confidence            45555 6688888776    3689999999999999999999999999998654   9999999999877   9999999


Q ss_pred             CccceEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhCCCC
Q 018973          309 VEVPTFLFIRDGQIRGRYVGS-GKGELIGEILRYQGVRV  346 (348)
Q Consensus       309 ~~~PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~~~~  346 (348)
                      .++||+++|++|+ +.++.|. +.++|.++|+++++...
T Consensus        90 ~~~Pt~~~~~~G~-~~~~~g~~~~~~l~~~l~~~~~~~~  127 (140)
T 2dj1_A           90 SGYPTIKILKKGQ-AVDYDGSRTQEEIVAKVREVSQPDW  127 (140)
T ss_dssp             CSSSEEEEEETTE-EEECCSCCCHHHHHHHHHHHHSSSC
T ss_pred             CccCeEEEEECCc-EEEcCCCCCHHHHHHHHHHhcCCCC
Confidence            9999999999999 7788898 99999999999987543

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.75  E-value=2e-18  Score=159.07  Aligned_cols=94  Identities=15%  Similarity=0.275  Sum_probs=85.2

Q ss_pred             CCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCC
Q 018973          119 ERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVP  197 (348)
Q Consensus       119 ~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~P  197 (348)
                      +.|+++ |.++|++++...++++|+|+|||+||+||+.+.|.|+++++++++ +.|++||+|+   .++++++|+|+++|
T Consensus         7 ~~v~~~-~~~~f~~~~~~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~---~~~~~~~~~v~~~P   82 (287)
T 3qou_A            7 ENIVNI-NESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDA---EQMIAAQFGLRAIP   82 (287)
T ss_dssp             TTEEEC-CTTTHHHHHTTTTTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTSSSEEEEEETTT---CHHHHHTTTCCSSS
T ss_pred             CccEEC-CHHHHHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEEeCcc---CHHHHHHcCCCCCC
Confidence            457777 789999988766699999999999999999999999999999987 9999999999   45699999999999


Q ss_pred             eEEEeeccccccccccCCC
Q 018973          198 HFSFYKSMEKIHEEEGIGP  216 (348)
Q Consensus       198 t~~~~~~g~~v~~~~G~~~  216 (348)
                      |+++|++|+.+.++.|...
T Consensus        83 t~~~~~~G~~~~~~~g~~~  101 (287)
T 3qou_A           83 TVYLFQNGQPVDGFQGPQP  101 (287)
T ss_dssp             EEEEEETTEEEEEEESCCC
T ss_pred             eEEEEECCEEEEEeeCCCC
Confidence            9999999999999988653

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.75  E-value=1.4e-17  Score=135.22  Aligned_cols=104  Identities=17%  Similarity=0.379  Sum_probs=92.0

Q ss_pred             eeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhC----CcEEEEEEECCCchhHHHHHHhCCC
Q 018973          233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMA----GTVVFARMNGDENDSCMQFLRDMNV  308 (348)
Q Consensus       233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~----~~v~~~~vd~~~~~~~~~l~~~~~V  308 (348)
                      +..+ +.++|++.+..   .+++++|+||++||++|+.+.|.+.++++.+.    +++.|+.+|++++.+   ++++|+|
T Consensus         9 v~~l-~~~~~~~~~~~---~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~---l~~~~~v   81 (133)
T 1x5d_A            9 VIEL-TDDSFDKNVLD---SEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQV---LASRYGI   81 (133)
T ss_dssp             CEEC-CTTHHHHHTTT---SSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTCCH---HHHHHTC
T ss_pred             CEEc-CHhhHHHHHhc---CCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCCHH---HHHhCCC
Confidence            4444 45778877654   47899999999999999999999999999986    679999999999887   9999999


Q ss_pred             CccceEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973          309 VEVPTFLFIRDGQIRGRYVGS-GKGELIGEILRYQG  343 (348)
Q Consensus       309 ~~~PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~  343 (348)
                      .++||+++|++|+.+.++.|. +.++|.++|.+++.
T Consensus        82 ~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~l~~~~~  117 (133)
T 1x5d_A           82 RGFPTIKIFQKGESPVDYDGGRTRSDIVSRALDLFS  117 (133)
T ss_dssp             CSSSEEEEEETTEEEEEECSCCSHHHHHHHHHHHHH
T ss_pred             CeeCeEEEEeCCCceEEecCCCCHHHHHHHHHHHhh
Confidence            999999999999999999999 99999999998753

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=99.74  E-value=6e-18  Score=135.80  Aligned_cols=102  Identities=14%  Similarity=0.255  Sum_probs=85.0

Q ss_pred             cceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCc
Q 018973          231 SAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVE  310 (348)
Q Consensus       231 ~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~  310 (348)
                      ..+.++ +.++|.+.+.+. ..+++++|+||++||++|+.+.|.|++++++++ +++|++||+++.      +++|+|.+
T Consensus         3 G~v~~i-t~~~f~~~v~~~-~~~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~-~v~f~kvd~d~~------~~~~~v~~   73 (118)
T 3evi_A            3 GELREI-SGNQYVNEVTNA-EEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFP-ETKFVKAIVNSC------IQHYHDNC   73 (118)
T ss_dssp             CSCEEC-CGGGHHHHTTTC-CTTCEEEEEEECTTSHHHHHHHHHHHHHHHHCT-TSEEEEEEGGGT------STTCCGGG
T ss_pred             cceEEe-CHHHHHHHHHhc-CCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CCEEEEEEhHHh------HHHCCCCC
Confidence            345566 567788776643 124499999999999999999999999999996 599999999874      47899999


Q ss_pred             cceEEEEeCCeEEEEEeCC--------ChHHHHHHHHHH
Q 018973          311 VPTFLFIRDGQIRGRYVGS--------GKGELIGEILRY  341 (348)
Q Consensus       311 ~PTl~~~~~G~~v~~~~G~--------~~~~L~~~l~~~  341 (348)
                      +||+++|++|+.+.++.|.        +.++|..+|.++
T Consensus        74 ~PT~~~fk~G~~v~~~~G~~~~gg~~~~~~~le~~L~~~  112 (118)
T 3evi_A           74 LPTIFVYKNGQIEAKFIGIIECGGINLKLEELEWKLAEV  112 (118)
T ss_dssp             CSEEEEEETTEEEEEEESTTTTTCSSCCHHHHHHHHHTT
T ss_pred             CCEEEEEECCEEEEEEeChhhhCCCCCCHHHHHHHHHHc
Confidence            9999999999999999986        367888888764

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=99.74  E-value=1.7e-17  Score=132.79  Aligned_cols=105  Identities=18%  Similarity=0.434  Sum_probs=91.4

Q ss_pred             eeecC-ChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCcc
Q 018973          233 VVQLH-SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEV  311 (348)
Q Consensus       233 v~~~~-s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~  311 (348)
                      +..+. +.++|++.+.+   .+++++|+||++||++|+.+.|.|.++++++ +++.|+.+|++++.+   ++++|+|.++
T Consensus         5 v~~~~g~~~~~~~~~~~---~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~-~~v~~~~vd~~~~~~---~~~~~~i~~~   77 (118)
T 2f51_A            5 IVHFNGTHEALLNRIKE---APGLVLVDFFATWCGPCQRLGQILPSIAEAN-KDVTFIKVDVDKNGN---AADAYGVSSI   77 (118)
T ss_dssp             SEEECSCHHHHHHHHHH---CSSCEEEEEECTTCHHHHHHHHHHHHHHHHC-TTSEEEEEETTTCHH---HHHHTTCCSS
T ss_pred             ceEecCCHHHHHHHHHh---CCCEEEEEEECCCCHHHHHHHHHHHHHHHHC-CCeEEEEEECCCCHH---HHHhcCCCCC
Confidence            44555 67888866554   3789999999999999999999999999998 679999999999887   9999999999


Q ss_pred             ceEEEEeC----CeEEEEEeCCChHHHHHHHHHHhCC
Q 018973          312 PTFLFIRD----GQIRGRYVGSGKGELIGEILRYQGV  344 (348)
Q Consensus       312 PTl~~~~~----G~~v~~~~G~~~~~L~~~l~~~~~~  344 (348)
                      ||+++|++    |+++.++.|...++|.+.+.++...
T Consensus        78 Pt~~~~~~~~~~G~~~~~~~G~~~~~l~~~~~~~~~~  114 (118)
T 2f51_A           78 PALFFVKKEGNEIKTLDQFVGADVSRIKADIEKFKHH  114 (118)
T ss_dssp             SEEEEEEEETTEEEEEEEEESCCHHHHHHHHHHHC--
T ss_pred             CEEEEEeCCCCcceEEEeecCCCHHHHHHHHHHhhhc
Confidence            99999988    9999999999778899999987643

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=99.74  E-value=1.1e-18  Score=143.17  Aligned_cols=97  Identities=16%  Similarity=0.307  Sum_probs=84.4

Q ss_pred             CCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCc------hhHHHHHHHc
Q 018973          118 DERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDES------EKTKELCERE  191 (348)
Q Consensus       118 ~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~------~~~~~l~~~~  191 (348)
                      .+.+.++ +.++|++.+.   + +|+|+|||+||++|+.+.|.|++++++++ +.|+.||+++.      ++..+++++|
T Consensus        15 ~~~v~~l-~~~~~~~~~~---~-~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-v~~~~vd~~~~~~~~~~d~~~~l~~~~   88 (135)
T 3emx_A           15 DGRLIYI-TPEEFRQLLQ---G-DAILAVYSKTCPHCHRDWPQLIQASKEVD-VPIVMFIWGSLIGERELSAARLEMNKA   88 (135)
T ss_dssp             TTEEEEC-CHHHHHHHHT---S-SEEEEEEETTCHHHHHHHHHHHHHHTTCC-SCEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred             cCceeec-CHHHHHHHhC---C-cEEEEEECCcCHhhhHhChhHHHHHHHCC-CEEEEEECCCchhhhhhhhhHHHHHHc
Confidence            3467777 8999999986   3 99999999999999999999999999998 99999999432      3367899999


Q ss_pred             CcCCCCeEEEeeccccccccccCCCCccc
Q 018973          192 KIKKVPHFSFYKSMEKIHEEEGIGPDQLM  220 (348)
Q Consensus       192 ~V~~~Pt~~~~~~g~~v~~~~G~~~~~l~  220 (348)
                      +|+++||+++|++|+.+.++.|.....+.
T Consensus        89 ~v~~~Pt~~~~~~G~~v~~~~G~~~~~~~  117 (135)
T 3emx_A           89 GVEGTPTLVFYKEGRIVDKLVGATPWSLK  117 (135)
T ss_dssp             TCCSSSEEEEEETTEEEEEEESCCCHHHH
T ss_pred             CCceeCeEEEEcCCEEEEEEeCCCCHHHH
Confidence            99999999999999999999997655444

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=99.74  E-value=8e-18  Score=136.44  Aligned_cols=86  Identities=22%  Similarity=0.369  Sum_probs=81.5

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCC-C
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS-G  330 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~-~  330 (348)
                      .+++++|+||++||++|+.+.|.+.++++++++++.++.||++++++   ++++|+|.++||++++++|+++.++.|. +
T Consensus        41 ~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~---l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~  117 (128)
T 3ul3_B           41 KNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNES---LARKFSVKSLPTIILLKNKTMLARKDHFVS  117 (128)
T ss_dssp             CCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGEEEEEEEGGGCHH---HHHHTTCCSSSEEEEEETTEEEEEESSCCC
T ss_pred             cCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHH---HHHHcCCCCcCEEEEEECCEEEEEecCCCC
Confidence            58999999999999999999999999999998789999999999887   9999999999999999999999999998 9


Q ss_pred             hHHHHHHHHH
Q 018973          331 KGELIGEILR  340 (348)
Q Consensus       331 ~~~L~~~l~~  340 (348)
                      .++|.++|++
T Consensus       118 ~~~l~~~l~~  127 (128)
T 3ul3_B          118 SNDLIALIKK  127 (128)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHHh
Confidence            9999999875

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=99.74  E-value=2.3e-17  Score=132.57  Aligned_cols=104  Identities=24%  Similarity=0.515  Sum_probs=90.3

Q ss_pred             ceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECC-CchhHHHHHHhCCCCc
Q 018973          232 AVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGD-ENDSCMQFLRDMNVVE  310 (348)
Q Consensus       232 ~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~-~~~~~~~l~~~~~V~~  310 (348)
                      .+..+ +.+++++.+...  .+++++|+||++||++|+.+.|.++++++++++ +.|+.+|++ ++.+   ++++|+|.+
T Consensus        19 ~v~~l-~~~~~~~~~~~~--~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~-~~~~~vd~~~~~~~---~~~~~~v~~   91 (124)
T 1faa_A           19 KVTEV-NKDTFWPIVKAA--GDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD-VIFLKLDCNQENKT---LAKELGIRV   91 (124)
T ss_dssp             SEEEE-CTTTHHHHHHHT--TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSSTTHH---HHHHHCCSS
T ss_pred             ceEEe-cchhHHHHHHhc--CCCEEEEEEECCcCHhHHHHhHHHHHHHHHCCC-CEEEEEecCcchHH---HHHHcCCCe
Confidence            44555 446788877653  578999999999999999999999999999864 999999998 5565   999999999


Q ss_pred             cceEEEEeCCeEEEEEeCCChHHHHHHHHHHh
Q 018973          311 VPTFLFIRDGQIRGRYVGSGKGELIGEILRYQ  342 (348)
Q Consensus       311 ~PTl~~~~~G~~v~~~~G~~~~~L~~~l~~~~  342 (348)
                      +||++++++|+++.++.|...++|.++|+++.
T Consensus        92 ~Pt~~~~~~G~~~~~~~G~~~~~l~~~i~~~~  123 (124)
T 1faa_A           92 VPTFKILKENSVVGEVTGAKYDKLLEAIQAAR  123 (124)
T ss_dssp             SSEEEEEETTEEEEEEESSCHHHHHHHHHHHT
T ss_pred             eeEEEEEeCCcEEEEEcCCCHHHHHHHHHHhh
Confidence            99999999999999999998889999998865

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=99.74  E-value=7.1e-18  Score=133.16  Aligned_cols=101  Identities=15%  Similarity=0.319  Sum_probs=87.7

Q ss_pred             eecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccce
Q 018973          234 VQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPT  313 (348)
Q Consensus       234 ~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PT  313 (348)
                      ....+.++| +.+.    .+++++|+||++||++|+.+.|.+.++++.++ ++.|+.+|++++++   ++++|+|.++||
T Consensus         5 ~~~~~~~~f-~~~~----~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~---l~~~~~v~~~Pt   75 (110)
T 2l6c_A            5 RDITTEAGM-AHFE----GLSDAIVFFHKNLCPHCKNMEKVLDKFGARAP-QVAISSVDSEARPE---LMKELGFERVPT   75 (110)
T ss_dssp             SBCGGGCSH-HHHT----TCSEEEEEEECSSCSTHHHHHHHHHHHHTTCT-TSCEEEEEGGGCHH---HHHHTTCCSSCE
T ss_pred             eecCCHHHH-HHHH----cCCCEEEEEECCCCHhHHHHHHHHHHHHHHCC-CcEEEEEcCcCCHH---HHHHcCCcccCE
Confidence            344566778 5554    36899999999999999999999999999885 59999999998887   999999999999


Q ss_pred             EEEEeCCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973          314 FLFIRDGQIRGRYVGS-GKGELIGEILRYQG  343 (348)
Q Consensus       314 l~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~  343 (348)
                      +++|++|+.+.++.|. +.++|.+++.++.+
T Consensus        76 ~~~~~~G~~v~~~~G~~~~~~l~~~~~~~~~  106 (110)
T 2l6c_A           76 LVFIRDGKVAKVFSGIMNPRELQALYASIHH  106 (110)
T ss_dssp             EEEEESSSEEEEEESCCCHHHHHHHHHTC--
T ss_pred             EEEEECCEEEEEEcCCCCHHHHHHHHHHHhh
Confidence            9999999999999998 99999999988754

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=99.74  E-value=8.5e-18  Score=131.86  Aligned_cols=89  Identities=17%  Similarity=0.337  Sum_probs=80.1

Q ss_pred             CCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC----CcEEEEEeCCCchhHHHHHHHcCcC
Q 018973          119 ERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN----DVEFILVMGDESEKTKELCEREKIK  194 (348)
Q Consensus       119 ~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~----~v~f~~vd~d~~~~~~~l~~~~~V~  194 (348)
                      +.+..+ +.++|++.+.   +++++|+||++||++|+.+.|.|+++++++.    ++.|+.||+++   ..+++++|+|+
T Consensus         5 ~~v~~l-~~~~~~~~~~---~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~---~~~l~~~~~v~   77 (111)
T 3uvt_A            5 STVLAL-TENNFDDTIA---EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTA---ERNICSKYSVR   77 (111)
T ss_dssp             CCSEEC-CTTTHHHHHH---SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTT---CHHHHHHTTCC
T ss_pred             CcceEc-ChhhHHHHhc---CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccc---cHhHHHhcCCC
Confidence            456666 8999999997   7899999999999999999999999999874    69999999998   55699999999


Q ss_pred             CCCeEEEeeccccccccccC
Q 018973          195 KVPHFSFYKSMEKIHEEEGI  214 (348)
Q Consensus       195 ~~Pt~~~~~~g~~v~~~~G~  214 (348)
                      ++||+++|++|+.+.++.|.
T Consensus        78 ~~Pt~~~~~~g~~~~~~~g~   97 (111)
T 3uvt_A           78 GYPTLLLFRGGKKVSEHSGG   97 (111)
T ss_dssp             SSSEEEEEETTEEEEEECSC
T ss_pred             cccEEEEEeCCcEEEeccCC
Confidence            99999999999999888774

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=99.74  E-value=1.5e-17  Score=136.05  Aligned_cols=96  Identities=14%  Similarity=0.248  Sum_probs=85.2

Q ss_pred             CCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHH---HHHHHHcCCcEEEEEeCCCc-hhHHHHHHHcCcC
Q 018973          119 ERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFM---VDLSRQCNDVEFILVMGDES-EKTKELCEREKIK  194 (348)
Q Consensus       119 ~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l---~~la~~~~~v~f~~vd~d~~-~~~~~l~~~~~V~  194 (348)
                      ..+..+.+.++++..+.+.++++|||+|||+||++|+.+.|.+   .+++++++++.|+.||+++. +...+++++|+|.
T Consensus        11 ~~f~~~~~~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~~~~~~~vd~~~~~~~~~~l~~~~~v~   90 (134)
T 2fwh_A           11 LNFTQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVL   90 (134)
T ss_dssp             CCCEECCSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCCHHHHHHHHHTTCC
T ss_pred             CCcEEecCHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCcEEEEEeCCCCcchHHHHHHHcCCC
Confidence            3566788999999999887899999999999999999999999   99999999999999999653 3467899999999


Q ss_pred             CCCeEEEe-eccccc--cccccC
Q 018973          195 KVPHFSFY-KSMEKI--HEEEGI  214 (348)
Q Consensus       195 ~~Pt~~~~-~~g~~v--~~~~G~  214 (348)
                      ++||+++| ++|+.+  .++.|.
T Consensus        91 ~~Pt~~~~d~~G~~v~~~~~~G~  113 (134)
T 2fwh_A           91 GLPTILFFDGQGQEHPQARVTGF  113 (134)
T ss_dssp             SSSEEEEECTTSCBCGGGCBCSC
T ss_pred             CCCEEEEECCCCCEeeeeeeeec
Confidence            99999999 889988  677774

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=99.74  E-value=8.7e-18  Score=130.71  Aligned_cols=89  Identities=18%  Similarity=0.263  Sum_probs=78.6

Q ss_pred             ceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCeE
Q 018973          121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPHF  199 (348)
Q Consensus       121 v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~  199 (348)
                      +.++ +.++|++++.  .+++++|+||++||++|+.+.|.|+++++++++ +.|+.||+++   ..+++++|+|+++||+
T Consensus         2 v~~l-~~~~~~~~~~--~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~---~~~~~~~~~v~~~Pt~   75 (105)
T 1nsw_A            2 TMTL-TDANFQQAIQ--GDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDE---NPETTSQFGIMSIPTL   75 (105)
T ss_dssp             CEEE-CTTTHHHHHS--SSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTTCEEEEEETTT---CHHHHHHTTCCSSSEE
T ss_pred             ceec-cHHhHHHHHh--CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECcC---CHHHHHHcCCccccEE
Confidence            4455 6788987665  679999999999999999999999999999976 9999999998   4569999999999999


Q ss_pred             EEeeccccccccccCC
Q 018973          200 SFYKSMEKIHEEEGIG  215 (348)
Q Consensus       200 ~~~~~g~~v~~~~G~~  215 (348)
                      ++|++|+.+.++.|..
T Consensus        76 ~~~~~G~~~~~~~G~~   91 (105)
T 1nsw_A           76 ILFKGGRPVKQLIGYQ   91 (105)
T ss_dssp             EEEETTEEEEEEESCC
T ss_pred             EEEeCCeEEEEEecCC
Confidence            9999999988887743

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=99.73  E-value=1.6e-17  Score=134.41  Aligned_cols=103  Identities=19%  Similarity=0.192  Sum_probs=88.3

Q ss_pred             ceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHh-----CCcEEEEEEECCCchhHHHHHHhC
Q 018973          232 AVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQM-----AGTVVFARMNGDENDSCMQFLRDM  306 (348)
Q Consensus       232 ~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~-----~~~v~~~~vd~~~~~~~~~l~~~~  306 (348)
                      .+..+ +.++|++.+.+   .+++++|+||++||++|+.+.|.|.++++.+     .+++.|+.||++++.+   ++++|
T Consensus        16 ~v~~l-~~~~f~~~~~~---~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~~---l~~~~   88 (127)
T 3h79_A           16 RVVEL-TDETFDSIVMD---PEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPD---VIERM   88 (127)
T ss_dssp             CCEEC-CTTTHHHHHTC---TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCHH---HHHHT
T ss_pred             ceEEC-ChhhHHHHHhC---CCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccHh---HHHhc
Confidence            44555 56788888764   3789999999999999999999999998865     2569999999999887   99999


Q ss_pred             CCCccceEEEEeCCeEE--EEEeCC-ChHHHHHHHHHH
Q 018973          307 NVVEVPTFLFIRDGQIR--GRYVGS-GKGELIGEILRY  341 (348)
Q Consensus       307 ~V~~~PTl~~~~~G~~v--~~~~G~-~~~~L~~~l~~~  341 (348)
                      +|.++||+++|++|+.+  .++.|. +.++|.++|+++
T Consensus        89 ~v~~~Pt~~~~~~g~~~~~~~~~G~~~~~~l~~~i~~~  126 (127)
T 3h79_A           89 RVSGFPTMRYYTRIDKQEPFEYSGQRYLSLVDSFVFQN  126 (127)
T ss_dssp             TCCSSSEEEEECSSCSSSCEECCSCCCHHHHHHHHHHH
T ss_pred             CCccCCEEEEEeCCCCCCceEecCCccHHHHHHHHHhc
Confidence            99999999999887654  577888 999999999875

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=99.73  E-value=1.3e-17  Score=133.37  Aligned_cols=92  Identities=17%  Similarity=0.191  Sum_probs=80.9

Q ss_pred             CCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC-CcEEEEEeCCCchhHHHHHHHcCcCCCC
Q 018973          119 ERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN-DVEFILVMGDESEKTKELCEREKIKKVP  197 (348)
Q Consensus       119 ~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~-~v~f~~vd~d~~~~~~~l~~~~~V~~~P  197 (348)
                      +..+...+.++|++.+.+ .++++||+||++||++|+.+.|.|+++++++. ++.|+.||+|+   ..+++++|+|+++|
T Consensus        12 ~~~~~~~~~~~f~~~v~~-~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~~v~~~~vd~d~---~~~l~~~~~v~~~P   87 (119)
T 1w4v_A           12 STTFNIQDGPDFQDRVVN-SETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDD---HTDLAIEYEVSAVP   87 (119)
T ss_dssp             CSEEECCSHHHHHHHTTT-CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEETTT---THHHHHHTTCCSSS
T ss_pred             ceEEEecChhhHHHHHHc-CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCC---CHHHHHHcCCCccc
Confidence            445555699999987754 58899999999999999999999999999986 49999999998   55699999999999


Q ss_pred             eEEEeeccccccccccC
Q 018973          198 HFSFYKSMEKIHEEEGI  214 (348)
Q Consensus       198 t~~~~~~g~~v~~~~G~  214 (348)
                      |+++|++|+.+.++.|.
T Consensus        88 t~~~~~~G~~~~~~~G~  104 (119)
T 1w4v_A           88 TVLAMKNGDVVDKFVGI  104 (119)
T ss_dssp             EEEEEETTEEEEEEESC
T ss_pred             EEEEEeCCcEEEEEcCC
Confidence            99999999998887774

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=99.73  E-value=1.1e-17  Score=131.81  Aligned_cols=92  Identities=20%  Similarity=0.303  Sum_probs=79.8

Q ss_pred             CCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCC
Q 018973          119 ERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVP  197 (348)
Q Consensus       119 ~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~P  197 (348)
                      +.+..+ +.++|++.+.+ .+++++|+||++||++|+.+.|.|+++++++++ +.|+.||+++   ..+++++|+|+++|
T Consensus         5 ~~v~~l-~~~~~~~~~~~-~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~v~~~P   79 (112)
T 1t00_A            5 GTLKHV-TDDSFEQDVLK-NDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDE---NPGTAAKYGVMSIP   79 (112)
T ss_dssp             CCCEEE-CTTTHHHHTTT-CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTT---CHHHHHHTTCCSSS
T ss_pred             ceEEec-chhhHHHHHhh-CCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcCCeEEEEEEcCC---CHHHHHhCCCCccc
Confidence            346676 67888776543 589999999999999999999999999999964 9999999998   45699999999999


Q ss_pred             eEEEeeccccccccccCC
Q 018973          198 HFSFYKSMEKIHEEEGIG  215 (348)
Q Consensus       198 t~~~~~~g~~v~~~~G~~  215 (348)
                      |+++|++|+.+.++.|..
T Consensus        80 t~~~~~~G~~~~~~~G~~   97 (112)
T 1t00_A           80 TLNVYQGGEVAKTIVGAK   97 (112)
T ss_dssp             EEEEEETTEEEEEEESCC
T ss_pred             EEEEEeCCEEEEEEeCCC
Confidence            999999999998887753

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=99.73  E-value=9.8e-18  Score=140.97  Aligned_cols=91  Identities=13%  Similarity=0.224  Sum_probs=81.6

Q ss_pred             CCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC-CcEEEEEeCCCchhHHHHHHHcCcCCC
Q 018973          118 DERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN-DVEFILVMGDESEKTKELCEREKIKKV  196 (348)
Q Consensus       118 ~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~-~v~f~~vd~d~~~~~~~l~~~~~V~~~  196 (348)
                      .+.+.++ +.++|++.+  ..+++|||+||++||++|+.+.|.|++++++++ ++.|++||+|+.   .+++++|+|+++
T Consensus        46 ~~~~~~l-~~~~f~~~~--~~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~---~~l~~~~~i~~~  119 (155)
T 2ppt_A           46 TGKVAGI-DPAILARAE--RDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAH---PAVAGRHRIQGI  119 (155)
T ss_dssp             CSSEEEC-CHHHHHHHT--TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTS---THHHHHTTCCSS
T ss_pred             CCCCccC-CHHHHHHHH--hCCCcEEEEEECCCCHHHHHHHHHHHHHHHHccCCEEEEEEeCCcc---HHHHHHcCCCcC
Confidence            4556777 789999988  378999999999999999999999999999997 499999999984   459999999999


Q ss_pred             CeEEEeeccccccccccC
Q 018973          197 PHFSFYKSMEKIHEEEGI  214 (348)
Q Consensus       197 Pt~~~~~~g~~v~~~~G~  214 (348)
                      ||+++|++|+.+.++.|.
T Consensus       120 Pt~~~~~~G~~~~~~~G~  137 (155)
T 2ppt_A          120 PAFILFHKGRELARAAGA  137 (155)
T ss_dssp             SEEEEEETTEEEEEEESC
T ss_pred             CEEEEEeCCeEEEEecCC
Confidence            999999999999888774

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=99.73  E-value=1.5e-17  Score=129.87  Aligned_cols=90  Identities=18%  Similarity=0.250  Sum_probs=79.8

Q ss_pred             ceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCeE
Q 018973          121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPHF  199 (348)
Q Consensus       121 v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~  199 (348)
                      +.++ +.++|++.+.+ .+++++|+||++||++|+.+.|.|+++++++++ +.|+.||+++   .++++++|+|+++||+
T Consensus         3 v~~l-~~~~~~~~~~~-~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~v~~~Pt~   77 (107)
T 1dby_A            3 AGAV-NDDTFKNVVLE-SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDE---SPNVASEYGIRSIPTI   77 (107)
T ss_dssp             CEEE-CHHHHHHHTTT-CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTT---CHHHHHHHTCCSSCEE
T ss_pred             cEec-cHHHHHHHHhc-CCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCCceEEEEEECCC---CHHHHHHCCCCcCCEE
Confidence            4555 88999987753 589999999999999999999999999999975 9999999998   4569999999999999


Q ss_pred             EEeeccccccccccCC
Q 018973          200 SFYKSMEKIHEEEGIG  215 (348)
Q Consensus       200 ~~~~~g~~v~~~~G~~  215 (348)
                      ++|++|+.+.++.|..
T Consensus        78 ~~~~~G~~~~~~~G~~   93 (107)
T 1dby_A           78 MVFKGGKKCETIIGAV   93 (107)
T ss_dssp             EEESSSSEEEEEESCC
T ss_pred             EEEeCCEEEEEEeCCC
Confidence            9999999988887743

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=99.73  E-value=2.1e-17  Score=131.89  Aligned_cols=105  Identities=27%  Similarity=0.494  Sum_probs=91.0

Q ss_pred             ceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCcc
Q 018973          232 AVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEV  311 (348)
Q Consensus       232 ~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~  311 (348)
                      .+..+ +.+++.+.+..   .+++++|+||++||++|+.+.|.+.++++++++++.|+.+|++++++   ++++|+|.++
T Consensus        13 ~v~~l-~~~~~~~~~~~---~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~i~~~   85 (121)
T 2i1u_A           13 ATIKV-TDASFATDVLS---SNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPE---TARNFQVVSI   85 (121)
T ss_dssp             CSEEC-CTTTHHHHTTT---CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH---HHHHTTCCSS
T ss_pred             cceec-CHHHHHHHHHh---CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCHH---HHHhcCCCcC
Confidence            34444 34666665543   47899999999999999999999999999997779999999999887   9999999999


Q ss_pred             ceEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973          312 PTFLFIRDGQIRGRYVGS-GKGELIGEILRYQG  343 (348)
Q Consensus       312 PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~  343 (348)
                      ||++++++|+.+.++.|. +.++|.++|+++++
T Consensus        86 Pt~~~~~~g~~~~~~~G~~~~~~l~~~l~~~l~  118 (121)
T 2i1u_A           86 PTLILFKDGQPVKRIVGAKGKAALLRELSDVVP  118 (121)
T ss_dssp             SEEEEEETTEEEEEEESCCCHHHHHHHTCSCCC
T ss_pred             CEEEEEECCEEEEEecCCCCHHHHHHHHHHHHh
Confidence            999999999999999999 88999999887653

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=99.73  E-value=3.8e-17  Score=134.38  Aligned_cols=100  Identities=24%  Similarity=0.405  Sum_probs=83.4

Q ss_pred             ChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEE
Q 018973          238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFI  317 (348)
Q Consensus       238 s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~  317 (348)
                      +.++|++.+..   .++ ++|+||++||++|+.+.|.|.++++++++++.|+.+|++++.+   ++++|+|.++||+++|
T Consensus        39 ~~~~~~~~~~~---~~~-vvv~f~~~~C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~---l~~~~~v~~~Pt~~~~  111 (140)
T 1v98_A           39 DEKGFAQEVAG---APL-TLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPG---LAARYGVRSVPTLVLF  111 (140)
T ss_dssp             ----------C---CCE-EEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHH---HHHHTTCCSSSEEEEE
T ss_pred             CHHHHHHHHHc---CCC-EEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCCCHH---HHHHCCCCccCEEEEE
Confidence            45677777664   245 9999999999999999999999999998779999999999887   9999999999999999


Q ss_pred             eCCeEEEEEeCC-ChHHHHHHHHHHhCC
Q 018973          318 RDGQIRGRYVGS-GKGELIGEILRYQGV  344 (348)
Q Consensus       318 ~~G~~v~~~~G~-~~~~L~~~l~~~~~~  344 (348)
                      ++|+++.++.|. +.++|.++|+++++.
T Consensus       112 ~~G~~~~~~~G~~~~~~l~~~i~~~l~~  139 (140)
T 1v98_A          112 RRGAPVATWVGASPRRVLEERLRPYLEG  139 (140)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHHHHHHTC
T ss_pred             eCCcEEEEEeCCCCHHHHHHHHHHHHcc
Confidence            999999999999 899999999998764

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.73  E-value=2.1e-17  Score=152.19  Aligned_cols=106  Identities=12%  Similarity=0.316  Sum_probs=94.8

Q ss_pred             ceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCcc
Q 018973          232 AVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEV  311 (348)
Q Consensus       232 ~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~  311 (348)
                      .+..+ +.++|++.+...  .+++++|+||++||++|+.+.|.++++++++++++.|++||++++++   ++++|+|.++
T Consensus         8 ~v~~~-~~~~f~~~~~~~--~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~---~~~~~~v~~~   81 (287)
T 3qou_A            8 NIVNI-NESNLQQVLEQS--MTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQM---IAAQFGLRAI   81 (287)
T ss_dssp             TEEEC-CTTTHHHHHTTT--TTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTSSSEEEEEETTTCHH---HHHTTTCCSS
T ss_pred             ccEEC-CHHHHHHHHHhc--CCCeEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEEeCccCHH---HHHHcCCCCC
Confidence            34455 558898887643  58999999999999999999999999999998889999999999887   9999999999


Q ss_pred             ceEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973          312 PTFLFIRDGQIRGRYVGS-GKGELIGEILRYQG  343 (348)
Q Consensus       312 PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~  343 (348)
                      ||+++|++|+++.++.|. +.+.+..++.+++.
T Consensus        82 Pt~~~~~~G~~~~~~~g~~~~~~l~~~l~~~lp  114 (287)
T 3qou_A           82 PTVYLFQNGQPVDGFQGPQPEEAIRALLDXVLP  114 (287)
T ss_dssp             SEEEEEETTEEEEEEESCCCHHHHHHHHHHHSC
T ss_pred             CeEEEEECCEEEEEeeCCCCHHHHHHHHHHHcC
Confidence            999999999999999999 89999999988753

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=99.73  E-value=3.2e-17  Score=134.36  Aligned_cols=108  Identities=20%  Similarity=0.413  Sum_probs=92.8

Q ss_pred             ceeecCChhhHHHHhhhcc--------cCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHH
Q 018973          232 AVVQLHSKEDVEKLIDDHK--------VDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFL  303 (348)
Q Consensus       232 ~v~~~~s~~~~~~~l~~~~--------~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~  303 (348)
                      .+..+ +.++|.+.+.+..        ..+++++|+||++||++|+.+.|.|.++++++++++.|+.+|++++++   ++
T Consensus        10 ~v~~l-~~~~f~~~v~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~---l~   85 (136)
T 2l5l_A           10 KVIHL-TKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQE---LA   85 (136)
T ss_dssp             SEEEE-CHHHHHHHTBCTTTCSSSCCBCCSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH---HH
T ss_pred             ceEEe-cchHHHHHHHhhccCccceeecCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCEEEEEEeCCCCHH---HH
Confidence            34444 4578887776421        136899999999999999999999999999998789999999999887   99


Q ss_pred             HhCCCCccceEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHhCC
Q 018973          304 RDMNVVEVPTFLFI-RDGQIRGRYVGS-GKGELIGEILRYQGV  344 (348)
Q Consensus       304 ~~~~V~~~PTl~~~-~~G~~v~~~~G~-~~~~L~~~l~~~~~~  344 (348)
                      ++|+|.++||+++| ++|+++ ++.|. +.++|.++|+++++.
T Consensus        86 ~~~~v~~~Pt~~~~~~~G~~~-~~~G~~~~~~l~~~l~~~~~~  127 (136)
T 2l5l_A           86 GAFGIRSIPSILFIPMEGKPE-MAQGAMPKASFKKAIDEFLLK  127 (136)
T ss_dssp             HHTTCCSSCEEEEECSSSCCE-EEESCCCHHHHHHHHHHHHTS
T ss_pred             HHcCCCCCCEEEEECCCCcEE-EEeCCCCHHHHHHHHHHHhhc
Confidence            99999999999999 899987 67888 999999999998764

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=99.73  E-value=1.4e-17  Score=128.66  Aligned_cols=87  Identities=23%  Similarity=0.369  Sum_probs=78.9

Q ss_pred             eEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEE
Q 018973          122 KKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSF  201 (348)
Q Consensus       122 ~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~  201 (348)
                      .++ +.++|++.+.  ++++++|+||++||++|+.+.|.+++++++++++.|+.+|+|+   ..+++++|+|+++||+++
T Consensus         2 ~~l-~~~~~~~~~~--~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~v~~~Pt~~~   75 (104)
T 2e0q_A            2 IHL-DSKNFDSFLA--SHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDE---NPDIAARYGVMSLPTVIF   75 (104)
T ss_dssp             EEC-CTTTHHHHHH--HSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTT---CHHHHHHTTCCSSCEEEE
T ss_pred             eec-CHHHHHHHHh--cCCcEEEEEECCCChhHHHHhHHHHHHHHHcCCceEEEEECCC---CHHHHHhCCccccCEEEE
Confidence            344 7889999986  6899999999999999999999999999999889999999998   456999999999999999


Q ss_pred             eeccccccccccC
Q 018973          202 YKSMEKIHEEEGI  214 (348)
Q Consensus       202 ~~~g~~v~~~~G~  214 (348)
                      |++|+.+.++.|.
T Consensus        76 ~~~g~~~~~~~g~   88 (104)
T 2e0q_A           76 FKDGEPVDEIIGA   88 (104)
T ss_dssp             EETTEEEEEEESC
T ss_pred             EECCeEhhhccCC
Confidence            9999998877774

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=99.73  E-value=1.5e-17  Score=130.08  Aligned_cols=90  Identities=14%  Similarity=0.258  Sum_probs=79.0

Q ss_pred             CceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCe
Q 018973          120 RVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPH  198 (348)
Q Consensus       120 ~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt  198 (348)
                      .+.++ +.++|++.+.+ .+++++|+||++||++|+.+.|.|+++++++++ +.|+.||+++.+   +++++|+|+++||
T Consensus         3 ~v~~l-~~~~f~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~v~~~Pt   77 (108)
T 2trx_A            3 KIIHL-TDDSFDTDVLK-ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP---GTAPKYGIRGIPT   77 (108)
T ss_dssp             TEEEC-CTTTHHHHTTT-CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCT---THHHHTTCCSSSE
T ss_pred             cceec-chhhHHHHHHh-cCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCCCcEEEEEECCCCH---HHHHHcCCcccCE
Confidence            45666 77889876642 689999999999999999999999999999975 999999999854   4999999999999


Q ss_pred             EEEeeccccccccccC
Q 018973          199 FSFYKSMEKIHEEEGI  214 (348)
Q Consensus       199 ~~~~~~g~~v~~~~G~  214 (348)
                      +++|++|+.+.++.|.
T Consensus        78 ~~~~~~G~~~~~~~G~   93 (108)
T 2trx_A           78 LLLFKNGEVAATKVGA   93 (108)
T ss_dssp             EEEEETTEEEEEEESC
T ss_pred             EEEEeCCEEEEEEecC
Confidence            9999999998887774

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=99.73  E-value=8.2e-18  Score=143.99  Aligned_cols=86  Identities=15%  Similarity=0.126  Sum_probs=76.0

Q ss_pred             CCceEecCHHHHHHHHHhcCCCEEEEEEeC-------CCCHHHHhhhhHHHHHHHHcC------CcEEEEEeCCCchhHH
Q 018973          119 ERVKKVHSIEEFDEALRLAKNKLVVVEFAA-------SRSLDSSKIYPFMVDLSRQCN------DVEFILVMGDESEKTK  185 (348)
Q Consensus       119 ~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a-------~wC~~C~~~~p~l~~la~~~~------~v~f~~vd~d~~~~~~  185 (348)
                      ..++++ |.++|++++...++.+|||+|||       +||+||+.+.|.|++++++|.      .+.|++||+|+   .+
T Consensus        18 ~~vi~l-t~~nF~~~v~~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~---~~   93 (178)
T 3ga4_A           18 TGVITV-TADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNE---VP   93 (178)
T ss_dssp             TSEEEC-CTTTHHHHTTCCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTT---CH
T ss_pred             CCCEEC-CHHHHHHHHcccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECcc---CH
Confidence            457787 89999998865457899999999       499999999999999999875      49999999999   56


Q ss_pred             HHHHHcCcCCCCeEEEeeccccc
Q 018973          186 ELCEREKIKKVPHFSFYKSMEKI  208 (348)
Q Consensus       186 ~l~~~~~V~~~Pt~~~~~~g~~v  208 (348)
                      +++++|||+++||+++|++|...
T Consensus        94 ~la~~~~I~siPtl~~F~~g~~~  116 (178)
T 3ga4_A           94 QLVKDLKLQNVPHLVVYPPAESN  116 (178)
T ss_dssp             HHHHHTTCCSSCEEEEECCCCGG
T ss_pred             HHHHHcCCCCCCEEEEEcCCCCC
Confidence            69999999999999999998644

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=99.73  E-value=1e-17  Score=138.04  Aligned_cols=93  Identities=14%  Similarity=0.191  Sum_probs=82.4

Q ss_pred             CCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCC
Q 018973          118 DERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKV  196 (348)
Q Consensus       118 ~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~  196 (348)
                      ...+.++ +.++|++.+.+ .++++||+||++||++|+.+.|.|+++++++++ +.|+.||+++   ..+++++|+|+++
T Consensus         5 ~~~v~~l-~~~~f~~~~~~-~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~---~~~l~~~~~v~~~   79 (140)
T 3hz4_A            5 GSSIIEF-EDMTWSQQVED-SKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRINIAT---NPWTAEKYGVQGT   79 (140)
T ss_dssp             TTTEEEE-CHHHHHHHTTT-CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEETTT---CHHHHHHHTCCEE
T ss_pred             CcceEEc-chHhHHHHHHh-CCCcEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCc---CHhHHHHCCCCcC
Confidence            3457777 88999965543 589999999999999999999999999999987 9999999999   4569999999999


Q ss_pred             CeEEEeeccccccccccCC
Q 018973          197 PHFSFYKSMEKIHEEEGIG  215 (348)
Q Consensus       197 Pt~~~~~~g~~v~~~~G~~  215 (348)
                      ||+++|++|+.+.++.|..
T Consensus        80 Pt~~~~~~G~~~~~~~G~~   98 (140)
T 3hz4_A           80 PTFKFFCHGRPVWEQVGQI   98 (140)
T ss_dssp             SEEEEEETTEEEEEEESSC
T ss_pred             CEEEEEeCCcEEEEEcCCC
Confidence            9999999999999888853

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=99.72  E-value=3.3e-17  Score=134.64  Aligned_cols=107  Identities=27%  Similarity=0.481  Sum_probs=92.3

Q ss_pred             ceeecCChhhHHHHhhhccc--------CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHH
Q 018973          232 AVVQLHSKEDVEKLIDDHKV--------DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFL  303 (348)
Q Consensus       232 ~v~~~~s~~~~~~~l~~~~~--------~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~  303 (348)
                      .+..+ +.++|+..+.+...        .+++++|+||++||++|+.+.|.|.++++.+++++.|+.||++++.+   ++
T Consensus        23 ~v~~l-~~~~f~~~l~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~   98 (141)
T 3hxs_A           23 GTIHL-TRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPE---LA   98 (141)
T ss_dssp             CCEEC-CHHHHHHHTCCCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH---HH
T ss_pred             Ccccc-cHHHHHHHhhccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCceEEEEEECCCCHH---HH
Confidence            44444 66778887765321        37899999999999999999999999999998789999999999887   99


Q ss_pred             HhCCCCccceEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973          304 RDMNVVEVPTFLFI-RDGQIRGRYVGS-GKGELIGEILRYQG  343 (348)
Q Consensus       304 ~~~~V~~~PTl~~~-~~G~~v~~~~G~-~~~~L~~~l~~~~~  343 (348)
                      ++|+|.++||+++| ++|+++ ++.|. +.++|.++|++++.
T Consensus        99 ~~~~v~~~Pt~~~~~~~g~~~-~~~G~~~~~~l~~~l~~~l~  139 (141)
T 3hxs_A           99 RDFGIQSIPTIWFVPMKGEPQ-VNMGALSKEQLKGYIDKVLL  139 (141)
T ss_dssp             HHTTCCSSSEEEEECSSSCCE-EEESCCCHHHHHHHHHHTTC
T ss_pred             HHcCCCCcCEEEEEeCCCCEE-EEeCCCCHHHHHHHHHHHHc
Confidence            99999999999999 677776 88898 99999999998865

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=99.72  E-value=1.4e-18  Score=140.63  Aligned_cols=103  Identities=25%  Similarity=0.391  Sum_probs=91.0

Q ss_pred             CCCCCceEecCHHHHHHHHHhc--CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCc
Q 018973          116 PRDERVKKVHSIEEFDEALRLA--KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKI  193 (348)
Q Consensus       116 ~~~~~v~~v~s~~~f~~~l~~~--~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V  193 (348)
                      ...+.+.++.+.++|++.+..+  .+++++|+||++||++|+.+.|.|++++++++++.|+.||+|+.+   +++++|+|
T Consensus        11 ~~~~~~~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~---~~~~~~~v   87 (130)
T 1wmj_A           11 AEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELK---EVAEKYNV   87 (130)
T ss_dssp             SSCSSSBCCSSSHHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCTTBCCEECCTTTSG---GGHHHHTC
T ss_pred             ccCcceEEcCCHHHHHHHHHHHhhcCCEEEEEEECCCChhHHHHHHHHHHHHHHCCCCEEEEEeccchH---HHHHHcCC
Confidence            4456788998999999998864  489999999999999999999999999999999999999999844   59999999


Q ss_pred             CCCCeEEEeeccccccccccCCCCcccc
Q 018973          194 KKVPHFSFYKSMEKIHEEEGIGPDQLMG  221 (348)
Q Consensus       194 ~~~Pt~~~~~~g~~v~~~~G~~~~~l~~  221 (348)
                      +++||+++|++|+.+.++.|.+.+.+..
T Consensus        88 ~~~Pt~~~~~~g~~~~~~~g~~~~~l~~  115 (130)
T 1wmj_A           88 EAMPTFLFIKDGAEADKVVGARKDDLQN  115 (130)
T ss_dssp             CSSCCCCBCTTTTCCBCCCTTCTTTHHH
T ss_pred             CccceEEEEeCCeEEEEEeCCCHHHHHH
Confidence            9999999999999999888866555543

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=99.72  E-value=2.1e-17  Score=128.90  Aligned_cols=89  Identities=20%  Similarity=0.333  Sum_probs=79.3

Q ss_pred             CceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCe
Q 018973          120 RVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPH  198 (348)
Q Consensus       120 ~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt  198 (348)
                      .+.++ +.++|++++.  .+++++|+||++||++|+.+.|.|+++++++++ +.|+.||+++   ..+++++|+|.++||
T Consensus         2 ~v~~l-~~~~~~~~~~--~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~v~~~Pt   75 (109)
T 2yzu_A            2 KPIEV-TDQNFDETLG--QHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDE---NPKTAMRYRVMSIPT   75 (109)
T ss_dssp             CCEEC-CTTTHHHHHH--HCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTT---CHHHHHHTTCCSSSE
T ss_pred             cceEc-cHhHHHHHhc--CCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCceEEEEEECCC---CHhHHHhCCCCcCCE
Confidence            45666 7889998776  589999999999999999999999999999984 9999999998   456999999999999


Q ss_pred             EEEeeccccccccccC
Q 018973          199 FSFYKSMEKIHEEEGI  214 (348)
Q Consensus       199 ~~~~~~g~~v~~~~G~  214 (348)
                      +++|++|+.+.++.|.
T Consensus        76 ~~~~~~g~~~~~~~g~   91 (109)
T 2yzu_A           76 VILFKDGQPVEVLVGA   91 (109)
T ss_dssp             EEEEETTEEEEEEESC
T ss_pred             EEEEeCCcEeeeEeCC
Confidence            9999999988877774

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=99.72  E-value=7e-18  Score=152.13  Aligned_cols=96  Identities=19%  Similarity=0.195  Sum_probs=86.6

Q ss_pred             CCCCCceEecCHHHHHHHHHhc-CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcC
Q 018973          116 PRDERVKKVHSIEEFDEALRLA-KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIK  194 (348)
Q Consensus       116 ~~~~~v~~v~s~~~f~~~l~~~-~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~  194 (348)
                      ...+.|.+|.+.++|.+.+.++ ++++|||+|||+||++|+.+.|.|.+|+++|+++.|++||+++    .+++.+|+|.
T Consensus       109 ~~~G~V~ei~s~~~f~~~v~~~~~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~~v~f~kVd~d~----~~l~~~~~I~  184 (245)
T 1a0r_P          109 PRYGFVYELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYPMVKFCKIKASN----TGAGDRFSSD  184 (245)
T ss_dssp             CCCCSEEECCSHHHHHHHHHSSCTTCEEEEEEECTTSTTHHHHHHHHHHHHHHCTTSEEEEEEHHH----HCCTTSSCTT
T ss_pred             CCCCeEEEeCCHHHHHHHHHHhcCCCEEEEEEECCCChHHHHHHHHHHHHHHHCCCCEEEEEeCCc----HHHHHHCCCC
Confidence            3567899998999999999753 5899999999999999999999999999999999999999875    3488999999


Q ss_pred             CCCeEEEeeccccccccccCC
Q 018973          195 KVPHFSFYKSMEKIHEEEGIG  215 (348)
Q Consensus       195 ~~Pt~~~~~~g~~v~~~~G~~  215 (348)
                      ++||+++|++|+.+.++.|..
T Consensus       185 ~~PTll~~~~G~~v~~~vG~~  205 (245)
T 1a0r_P          185 VLPTLLVYKGGELLSNFISVT  205 (245)
T ss_dssp             TCSEEEEEETTEEEEEETTGG
T ss_pred             CCCEEEEEECCEEEEEEeCCc
Confidence            999999999999999988854

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=99.72  E-value=4.8e-17  Score=144.70  Aligned_cols=103  Identities=20%  Similarity=0.399  Sum_probs=93.8

Q ss_pred             cCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEE
Q 018973          236 LHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL  315 (348)
Q Consensus       236 ~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~  315 (348)
                      ..+.++|++.+..   .+++++|+||++||++|+.+.|.|+++++.+++++.|+.||++++++   ++++|+|.++||++
T Consensus        16 ~lt~~~f~~~v~~---~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---l~~~~~v~~~Pt~~   89 (222)
T 3dxb_A           16 HLTDDSFDTDVLK---ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG---TAPKYGIRGIPTLL   89 (222)
T ss_dssp             ECCTTTHHHHHTT---CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCTT---TGGGGTCCSBSEEE
T ss_pred             eCCHHHHHHHHHh---cCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCcEEEEEECCCCHH---HHHHcCCCcCCEEE
Confidence            3466888886543   47899999999999999999999999999998889999999999988   99999999999999


Q ss_pred             EEeCCeEEEEEeCC-ChHHHHHHHHHHhCC
Q 018973          316 FIRDGQIRGRYVGS-GKGELIGEILRYQGV  344 (348)
Q Consensus       316 ~~~~G~~v~~~~G~-~~~~L~~~l~~~~~~  344 (348)
                      ++++|+++.++.|. +.++|.++|++++..
T Consensus        90 ~~~~G~~~~~~~G~~~~~~l~~~l~~~l~~  119 (222)
T 3dxb_A           90 LFKNGEVAATKVGALSKGQLKEFLDANLAG  119 (222)
T ss_dssp             EEETTEEEEEEESCCCHHHHHHHHHHHSCC
T ss_pred             EEECCeEEEEeccccChHHHHHHHHhhccc
Confidence            99999999999999 999999999998754

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.72  E-value=1.6e-17  Score=136.23  Aligned_cols=91  Identities=14%  Similarity=0.206  Sum_probs=79.6

Q ss_pred             CCCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC----cEEEEEeCCCchhHHHHHHHcC
Q 018973          117 RDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND----VEFILVMGDESEKTKELCEREK  192 (348)
Q Consensus       117 ~~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~----v~f~~vd~d~~~~~~~l~~~~~  192 (348)
                      ....+..+ +.++|++.+.  .++++||+||++||++|+.+.|.|+++++++.+    +.|+.||+++   ..+++++|+
T Consensus        15 ~~~~v~~l-~~~~~~~~~~--~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~---~~~~~~~~~   88 (140)
T 2dj1_A           15 EENGVWVL-NDGNFDNFVA--DKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATS---ASMLASKFD   88 (140)
T ss_dssp             EETTEEEC-CTTTHHHHHT--TCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTT---CHHHHHHTT
T ss_pred             CCCCCEEc-ChHhHHHHHh--cCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcc---cHHHHHHCC
Confidence            34567777 8899999886  689999999999999999999999999998753    9999999998   456999999


Q ss_pred             cCCCCeEEEeeccccccccccC
Q 018973          193 IKKVPHFSFYKSMEKIHEEEGI  214 (348)
Q Consensus       193 V~~~Pt~~~~~~g~~v~~~~G~  214 (348)
                      |+++||+++|++|+ +.++.|.
T Consensus        89 v~~~Pt~~~~~~G~-~~~~~g~  109 (140)
T 2dj1_A           89 VSGYPTIKILKKGQ-AVDYDGS  109 (140)
T ss_dssp             CCSSSEEEEEETTE-EEECCSC
T ss_pred             CCccCeEEEEECCc-EEEcCCC
Confidence            99999999999998 6667663

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=99.72  E-value=2.4e-17  Score=132.00  Aligned_cols=90  Identities=18%  Similarity=0.148  Sum_probs=77.9

Q ss_pred             CceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC-CcEEEEEeCCCchhHHHHHHHcCcCCCCe
Q 018973          120 RVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN-DVEFILVMGDESEKTKELCEREKIKKVPH  198 (348)
Q Consensus       120 ~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~-~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt  198 (348)
                      .+.++ +.++|++.+.+ .+++++|+||++||++|+.+.|.|++++++++ ++.|+.||+++   ..+++++|+|+++||
T Consensus         4 ~v~~l-~~~~f~~~~~~-~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~---~~~~~~~~~v~~~Pt   78 (122)
T 3aps_A            4 ASIDL-TPQTFNEKVLQ-GKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQA---YPQTCQKAGIKAYPS   78 (122)
T ss_dssp             CSEEC-CHHHHHHHTTT-CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTT---CHHHHHHTTCCSSSE
T ss_pred             chhcC-CHHHHHHHHhc-CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCcC---CHHHHHHcCCCccce
Confidence            46666 78999765442 58999999999999999999999999999998 59999999999   456999999999999


Q ss_pred             EEEeeccccccccccC
Q 018973          199 FSFYKSMEKIHEEEGI  214 (348)
Q Consensus       199 ~~~~~~g~~v~~~~G~  214 (348)
                      +++|++|+.+.++.|.
T Consensus        79 ~~~~~~~~~~~~~~g~   94 (122)
T 3aps_A           79 VKLYQYERAKKSIWEE   94 (122)
T ss_dssp             EEEEEEEGGGTEEEEE
T ss_pred             EEEEeCCCccceeecc
Confidence            9999888778777774

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.72  E-value=5.2e-17  Score=130.93  Aligned_cols=102  Identities=19%  Similarity=0.283  Sum_probs=88.4

Q ss_pred             ceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchhHHHHHHhCCCCc
Q 018973          232 AVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDSCMQFLRDMNVVE  310 (348)
Q Consensus       232 ~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~~~~l~~~~~V~~  310 (348)
                      .+..+ +.++|++.+.      +.++|+||++||++|+.+.|.|.++++++++ ++.|+.+|++++.+   ++++|+|.+
T Consensus         8 ~v~~l-~~~~f~~~~~------~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~~~~---~~~~~~v~~   77 (126)
T 1x5e_A            8 NVRVI-TDENWRELLE------GDWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPG---LSGRFIINA   77 (126)
T ss_dssp             SEEEC-CTTTHHHHTS------SEEEEEEECSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTTCHH---HHHHTTCCS
T ss_pred             ccEEe-cHHHHHHHhC------CCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcCCHH---HHHHcCCcc
Confidence            45555 5577887664      2389999999999999999999999999874 69999999999887   999999999


Q ss_pred             cceEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhCC
Q 018973          311 VPTFLFIRDGQIRGRYVGS-GKGELIGEILRYQGV  344 (348)
Q Consensus       311 ~PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~~  344 (348)
                      +||+++|++|+ +.++.|. +.++|.++|+++++.
T Consensus        78 ~Pt~~~~~~G~-~~~~~G~~~~~~l~~~l~~~~~~  111 (126)
T 1x5e_A           78 LPTIYHCKDGE-FRRYQGPRTKKDFINFISDKEWK  111 (126)
T ss_dssp             SSEEEEEETTE-EEECCSCCCHHHHHHHHHTCGGG
T ss_pred             cCEEEEEeCCe-EEEeecCCCHHHHHHHHHHHhhc
Confidence            99999999999 5788998 999999999987653

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=99.72  E-value=2.4e-17  Score=136.86  Aligned_cols=91  Identities=21%  Similarity=0.355  Sum_probs=81.7

Q ss_pred             CCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC-CcEEEEEeCCCchhHHHHHHHcCcCCC
Q 018973          118 DERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN-DVEFILVMGDESEKTKELCEREKIKKV  196 (348)
Q Consensus       118 ~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~-~v~f~~vd~d~~~~~~~l~~~~~V~~~  196 (348)
                      .+.+..+ +.++|++.+.  .+++++|+||++||++|+.+.|.|+++++++. ++.|+.||+++   ..+++++|+|+++
T Consensus        37 ~~~v~~l-~~~~~~~~~~--~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~---~~~l~~~~~v~~~  110 (148)
T 3p2a_A           37 DGEVINA-TAETLDKLLQ--DDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEA---EPALSTRFRIRSI  110 (148)
T ss_dssp             CCCCEEC-CTTTHHHHTT--CSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTCEEEEEETTT---CHHHHHHTTCCSS
T ss_pred             cCCceec-CHHHHHHHHh--cCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCCceEEEEEECcC---CHHHHHHCCCCcc
Confidence            4456666 7899999884  79999999999999999999999999999996 49999999999   5569999999999


Q ss_pred             CeEEEeeccccccccccC
Q 018973          197 PHFSFYKSMEKIHEEEGI  214 (348)
Q Consensus       197 Pt~~~~~~g~~v~~~~G~  214 (348)
                      ||+++|++|+.+.++.|.
T Consensus       111 Pt~~~~~~G~~~~~~~G~  128 (148)
T 3p2a_A          111 PTIMLYRNGKMIDMLNGA  128 (148)
T ss_dssp             SEEEEEETTEEEEEESSC
T ss_pred             CEEEEEECCeEEEEEeCC
Confidence            999999999999888874

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.71  E-value=3.2e-17  Score=132.74  Aligned_cols=93  Identities=16%  Similarity=0.228  Sum_probs=80.1

Q ss_pred             CCCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCC
Q 018973          117 RDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKK  195 (348)
Q Consensus       117 ~~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~  195 (348)
                      ..+.+.++ +.++|++.+.+ .+++++|+||++||++|+.+.|.|+++++++++ +.|+.||+|+   ..+++++|+|++
T Consensus        15 ~~~~v~~l-~~~~f~~~~~~-~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~---~~~l~~~~~v~~   89 (130)
T 2dml_A           15 SSDDVIEL-TPSNFNREVIQ-SDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADK---HQSLGGQYGVQG   89 (130)
T ss_dssp             TTSSSEEC-CTTTHHHHTTT-CSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTTTSEEEEEETTT---CHHHHHHHTCCS
T ss_pred             CCCCcEEC-CHHHHHHHHhc-CCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcCceEEEEEeCCC---CHHHHHHcCCCc
Confidence            34567777 77899987653 588999999999999999999999999999987 9999999998   556999999999


Q ss_pred             CCeEEEeecccc-ccccccC
Q 018973          196 VPHFSFYKSMEK-IHEEEGI  214 (348)
Q Consensus       196 ~Pt~~~~~~g~~-v~~~~G~  214 (348)
                      +||+++|++|+. +.++.|.
T Consensus        90 ~Pt~~~~~~~~~~~~~~~G~  109 (130)
T 2dml_A           90 FPTIKIFGANKNKPEDYQGG  109 (130)
T ss_dssp             SSEEEEESSCTTSCEECCSC
T ss_pred             cCEEEEEeCCCCeEEEeecC
Confidence            999999988776 6666663

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=99.71  E-value=2.1e-17  Score=135.45  Aligned_cols=104  Identities=19%  Similarity=0.325  Sum_probs=87.2

Q ss_pred             ceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCc------hhHHHHHHh
Q 018973          232 AVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN------DSCMQFLRD  305 (348)
Q Consensus       232 ~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~------~~~~~l~~~  305 (348)
                      .+..+ +.++|++.+.     + +++|+||++||++|+.+.|.+.+++++++  +.|+.||++..      +...+++++
T Consensus        17 ~v~~l-~~~~~~~~~~-----~-~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--v~~~~vd~~~~~~~~~~d~~~~l~~~   87 (135)
T 3emx_A           17 RLIYI-TPEEFRQLLQ-----G-DAILAVYSKTCPHCHRDWPQLIQASKEVD--VPIVMFIWGSLIGERELSAARLEMNK   87 (135)
T ss_dssp             EEEEC-CHHHHHHHHT-----S-SEEEEEEETTCHHHHHHHHHHHHHHTTCC--SCEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred             ceeec-CHHHHHHHhC-----C-cEEEEEECCcCHhhhHhChhHHHHHHHCC--CEEEEEECCCchhhhhhhhhHHHHHH
Confidence            34555 6788888875     3 99999999999999999999999999985  89999999322      223349999


Q ss_pred             CCCCccceEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhCC
Q 018973          306 MNVVEVPTFLFIRDGQIRGRYVGS-GKGELIGEILRYQGV  344 (348)
Q Consensus       306 ~~V~~~PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~~  344 (348)
                      |+|.++||+++|++|+++.++.|. +.+.+.++++++.+.
T Consensus        88 ~~v~~~Pt~~~~~~G~~v~~~~G~~~~~~~~~~i~~~~~~  127 (135)
T 3emx_A           88 AGVEGTPTLVFYKEGRIVDKLVGATPWSLKVEKAREIYGG  127 (135)
T ss_dssp             HTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHC--
T ss_pred             cCCceeCeEEEEcCCEEEEEEeCCCCHHHHHHHHHHHhCC
Confidence            999999999999999999999999 888899999888654

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=99.71  E-value=9e-18  Score=135.58  Aligned_cols=104  Identities=21%  Similarity=0.455  Sum_probs=85.4

Q ss_pred             eeecCChhhHHHHhhhcccCCcEEEEEEeCCCCh--------------hhhhhhhHHHHHHHHhCCcEEEEEEECCCchh
Q 018973          233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCG--------------PCVKVYPTVIKLSRQMAGTVVFARMNGDENDS  298 (348)
Q Consensus       233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~--------------~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~  298 (348)
                      +..+ +.++|++.+..   .+++++|+||++||+              +|+.+.|.++++++++++++.|+.+|++++++
T Consensus         5 v~~l-~~~~f~~~~~~---~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~~~~~~vd~d~~~~   80 (123)
T 1oaz_A            5 IIHL-TDDSFDTDVLK---ADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG   80 (123)
T ss_dssp             CEEC-CSTTHHHHTTS---CSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC-------CEEEEEETTSCTT
T ss_pred             cEec-ChhhHHHHHHh---CCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCCeEEEEEECCCCHH
Confidence            3444 45777765543   489999999999999              99999999999999997779999999999987


Q ss_pred             HHHHHHhCCCCccceEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973          299 CMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS-GKGELIGEILRYQG  343 (348)
Q Consensus       299 ~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~  343 (348)
                         ++++|+|.++||+++|++|+.+.++.|. +.++|.++|+++++
T Consensus        81 ---l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~  123 (123)
T 1oaz_A           81 ---TAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA  123 (123)
T ss_dssp             ---TGGGGTCCBSSEEEEEESSSEEEEEESCCCHHHHHHHHTTTCC
T ss_pred             ---HHHHcCCCccCEEEEEECCEEEEEEeCCCCHHHHHHHHHHHhC
Confidence               9999999999999999999999999999 99999999987654

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.71  E-value=2.4e-17  Score=133.80  Aligned_cols=92  Identities=17%  Similarity=0.227  Sum_probs=80.5

Q ss_pred             CCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC-----CcEEEEEeCCCchhHHHHHHHcC
Q 018973          118 DERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN-----DVEFILVMGDESEKTKELCEREK  192 (348)
Q Consensus       118 ~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~-----~v~f~~vd~d~~~~~~~l~~~~~  192 (348)
                      ...+..+ +.++|++.+.+ .+++++|+||++||++|+.+.|.|+++++++.     ++.|+.||+++.   .+++++|+
T Consensus         6 ~~~v~~l-~~~~~~~~~~~-~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~---~~l~~~~~   80 (133)
T 1x5d_A            6 SGDVIEL-TDDSFDKNVLD-SEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVN---QVLASRYG   80 (133)
T ss_dssp             CCSCEEC-CTTHHHHHTTT-SSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTC---CHHHHHHT
T ss_pred             CCcCEEc-CHhhHHHHHhc-CCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCC---HHHHHhCC
Confidence            4457777 78899988753 57999999999999999999999999999885     599999999984   45999999


Q ss_pred             cCCCCeEEEeeccccccccccC
Q 018973          193 IKKVPHFSFYKSMEKIHEEEGI  214 (348)
Q Consensus       193 V~~~Pt~~~~~~g~~v~~~~G~  214 (348)
                      |+++||+++|++|+.+.++.|.
T Consensus        81 v~~~Pt~~~~~~g~~~~~~~G~  102 (133)
T 1x5d_A           81 IRGFPTIKIFQKGESPVDYDGG  102 (133)
T ss_dssp             CCSSSEEEEEETTEEEEEECSC
T ss_pred             CCeeCeEEEEeCCCceEEecCC
Confidence            9999999999999988888874

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=99.71  E-value=2.5e-17  Score=135.37  Aligned_cols=93  Identities=19%  Similarity=0.217  Sum_probs=77.6

Q ss_pred             CCCCCceEecCHHHHHHHHHhc----------CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhH
Q 018973          116 PRDERVKKVHSIEEFDEALRLA----------KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKT  184 (348)
Q Consensus       116 ~~~~~v~~v~s~~~f~~~l~~~----------~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~  184 (348)
                      ...+.+.++ +.++|++.+.+.          ++++|||+||++||++|+.+.|.|+++++++++ +.|+.||+|+   .
T Consensus        19 ~~~~~v~~l-~~~~f~~~l~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~---~   94 (141)
T 3hxs_A           19 KPQSGTIHL-TRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDK---E   94 (141)
T ss_dssp             ----CCEEC-CHHHHHHHTCCCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEETTT---C
T ss_pred             CCCCCcccc-cHHHHHHHhhccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCceEEEEEECCC---C
Confidence            345567777 899999988753          379999999999999999999999999999985 9999999999   5


Q ss_pred             HHHHHHcCcCCCCeEEEe-ecccccccccc
Q 018973          185 KELCEREKIKKVPHFSFY-KSMEKIHEEEG  213 (348)
Q Consensus       185 ~~l~~~~~V~~~Pt~~~~-~~g~~v~~~~G  213 (348)
                      .+++++|+|+++||+++| ++|+.+ ++.|
T Consensus        95 ~~~~~~~~v~~~Pt~~~~~~~g~~~-~~~G  123 (141)
T 3hxs_A           95 PELARDFGIQSIPTIWFVPMKGEPQ-VNMG  123 (141)
T ss_dssp             HHHHHHTTCCSSSEEEEECSSSCCE-EEES
T ss_pred             HHHHHHcCCCCcCEEEEEeCCCCEE-EEeC
Confidence            569999999999999999 456554 5655

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.71  E-value=3.2e-17  Score=132.74  Aligned_cols=104  Identities=17%  Similarity=0.307  Sum_probs=90.2

Q ss_pred             ceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCcc
Q 018973          232 AVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEV  311 (348)
Q Consensus       232 ~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~  311 (348)
                      .+..+ +.++|++.+..   .+++++|+||++||++|+.+.|.|.++++++++++.|+.+|++++.+   ++++|+|.++
T Consensus        18 ~v~~l-~~~~f~~~~~~---~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~---l~~~~~v~~~   90 (130)
T 2dml_A           18 DVIEL-TPSNFNREVIQ---SDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQS---LGGQYGVQGF   90 (130)
T ss_dssp             SSEEC-CTTTHHHHTTT---CSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTTTSEEEEEETTTCHH---HHHHHTCCSS
T ss_pred             CcEEC-CHHHHHHHHhc---CCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcCceEEEEEeCCCCHH---HHHHcCCCcc
Confidence            44555 45778876654   47899999999999999999999999999998779999999999887   9999999999


Q ss_pred             ceEEEEeCCeE-EEEEeCC-ChHHHHHHHHHHh
Q 018973          312 PTFLFIRDGQI-RGRYVGS-GKGELIGEILRYQ  342 (348)
Q Consensus       312 PTl~~~~~G~~-v~~~~G~-~~~~L~~~l~~~~  342 (348)
                      ||+++|++|+. +.++.|. +.++|.++|.+.+
T Consensus        91 Pt~~~~~~~~~~~~~~~G~~~~~~l~~~l~~~l  123 (130)
T 2dml_A           91 PTIKIFGANKNKPEDYQGGRTGEAIVDAALSAL  123 (130)
T ss_dssp             SEEEEESSCTTSCEECCSCCSHHHHHHHHHHHH
T ss_pred             CEEEEEeCCCCeEEEeecCCCHHHHHHHHHHHH
Confidence            99999987654 7888998 8999999998875

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=99.71  E-value=2.5e-17  Score=134.96  Aligned_cols=91  Identities=18%  Similarity=0.260  Sum_probs=79.0

Q ss_pred             CCCceEecCHHHHHHHHHhc----------CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHH
Q 018973          118 DERVKKVHSIEEFDEALRLA----------KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKE  186 (348)
Q Consensus       118 ~~~v~~v~s~~~f~~~l~~~----------~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~  186 (348)
                      .+.+.++ +.++|++.+.++          ++++++|+||++||++|+.+.|.|+++++++++ +.|+.||+++   ..+
T Consensus         8 ~~~v~~l-~~~~f~~~v~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~---~~~   83 (136)
T 2l5l_A            8 NGKVIHL-TKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEK---EQE   83 (136)
T ss_dssp             TTSEEEE-CHHHHHHHTBCTTTCSSSCCBCCSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTTTCEEEEEETTT---CHH
T ss_pred             CCceEEe-cchHHHHHHHhhccCccceeecCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCEEEEEEeCCC---CHH
Confidence            3457777 789999988642          478999999999999999999999999999975 9999999998   456


Q ss_pred             HHHHcCcCCCCeEEEe-ecccccccccc
Q 018973          187 LCEREKIKKVPHFSFY-KSMEKIHEEEG  213 (348)
Q Consensus       187 l~~~~~V~~~Pt~~~~-~~g~~v~~~~G  213 (348)
                      ++++|+|+++||+++| ++|+.+ ++.|
T Consensus        84 l~~~~~v~~~Pt~~~~~~~G~~~-~~~G  110 (136)
T 2l5l_A           84 LAGAFGIRSIPSILFIPMEGKPE-MAQG  110 (136)
T ss_dssp             HHHHTTCCSSCEEEEECSSSCCE-EEES
T ss_pred             HHHHcCCCCCCEEEEECCCCcEE-EEeC
Confidence            9999999999999999 788877 5555

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=99.71  E-value=2.8e-17  Score=133.79  Aligned_cols=103  Identities=17%  Similarity=0.246  Sum_probs=89.9

Q ss_pred             CChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHH--HHHHHhCCcEEEEEEEC---CCchhHHHHHHhCCC---
Q 018973          237 HSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVI--KLSRQMAGTVVFARMNG---DENDSCMQFLRDMNV---  308 (348)
Q Consensus       237 ~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~--~la~~~~~~v~~~~vd~---~~~~~~~~l~~~~~V---  308 (348)
                      .+.+++++.+......+++++|+||++||++|+.+.|.|.  ++++.+.+++.++.||+   +++.+   ++++|+|   
T Consensus        13 ~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~~~vd~~~~~~~~~---l~~~~~v~~~   89 (133)
T 3fk8_A           13 DAWTQVKKALAAGKRTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLE---LSQAYGDPIQ   89 (133)
T ss_dssp             CHHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHHHCEEEEEECTTTTSSHH---HHHHTTCGGG
T ss_pred             ChHhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcCCEEEEEEeCCcccchHH---HHHHhCCccC
Confidence            4556777777765456899999999999999999999999  99998876799999999   66665   9999999   


Q ss_pred             CccceEEEE-eCCeEEEEEeC-------C-ChHHHHHHHHHHh
Q 018973          309 VEVPTFLFI-RDGQIRGRYVG-------S-GKGELIGEILRYQ  342 (348)
Q Consensus       309 ~~~PTl~~~-~~G~~v~~~~G-------~-~~~~L~~~l~~~~  342 (348)
                      .++||++++ ++|+++.++.|       . +.+++.++|+++.
T Consensus        90 ~~~Pt~~~~d~~G~~~~~~~g~~~~~~~~~~~~~l~~~l~~l~  132 (133)
T 3fk8_A           90 DGIPAVVVVNSDGKVRYTTKGGELANARKMSDQGIYDFFAKIT  132 (133)
T ss_dssp             GCSSEEEEECTTSCEEEECCSCTTTTGGGSCHHHHHHHHHHHH
T ss_pred             CccceEEEECCCCCEEEEecCCcccccccCCHHHHHHHHHHhc
Confidence            999999999 89999999999       5 8899999998764

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=99.71  E-value=2.5e-17  Score=133.82  Aligned_cols=90  Identities=14%  Similarity=0.268  Sum_probs=79.6

Q ss_pred             CceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCe
Q 018973          120 RVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPH  198 (348)
Q Consensus       120 ~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt  198 (348)
                      .+.++ +.++|++.+. .++++++|+||++||++|+.+.|.|+++++++++ +.|+.||+++.+   +++++|+|+++||
T Consensus        23 ~v~~l-~~~~f~~~~~-~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~~~~~---~l~~~~~v~~~Pt   97 (128)
T 2o8v_B           23 KIIHL-TDDSFDTDVL-KADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNP---GTAPKYGIRGIPT   97 (128)
T ss_dssp             CSEEE-CTTTHHHHTT-TCSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTTTEEEEEEETTTCC---TTSGGGTCCSSSE
T ss_pred             ccEec-ChhhHHHHHH-hcCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCH---HHHHHcCCCccCE
Confidence            46777 7889987653 2689999999999999999999999999999974 999999999854   4999999999999


Q ss_pred             EEEeeccccccccccC
Q 018973          199 FSFYKSMEKIHEEEGI  214 (348)
Q Consensus       199 ~~~~~~g~~v~~~~G~  214 (348)
                      +++|++|+.+.++.|.
T Consensus        98 ~~~~~~G~~~~~~~G~  113 (128)
T 2o8v_B           98 LLLFKNGEVAATKVGA  113 (128)
T ss_dssp             EEEEETTEEEEEEESC
T ss_pred             EEEEeCCEEEEEEcCC
Confidence            9999999998888774

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=99.70  E-value=3.9e-17  Score=126.75  Aligned_cols=90  Identities=20%  Similarity=0.280  Sum_probs=79.1

Q ss_pred             ceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCeE
Q 018973          121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPHF  199 (348)
Q Consensus       121 v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~  199 (348)
                      +..+ +.++|++.+.+ .+++++|+||++||++|+.+.|.++++++++++ +.|+.+|+++   .++++++|+|+++||+
T Consensus         2 v~~~-~~~~~~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~v~~~Pt~   76 (105)
T 1fb6_A            2 VQDV-NDSSWKEFVLE-SEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDE---APGIATQYNIRSIPTV   76 (105)
T ss_dssp             CEEC-CTTTHHHHTTT-CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTT---CHHHHHHTTCCSSSEE
T ss_pred             ceec-hhhhHHHHHhc-CCCcEEEEEECCCChHHHHHHHHHHHHHHHhcCceEEEEEcCcc---hHHHHHhCCCCcccEE
Confidence            3444 78889987653 589999999999999999999999999999986 9999999998   4569999999999999


Q ss_pred             EEeeccccccccccCC
Q 018973          200 SFYKSMEKIHEEEGIG  215 (348)
Q Consensus       200 ~~~~~g~~v~~~~G~~  215 (348)
                      +++++|+.+.++.|..
T Consensus        77 ~~~~~g~~~~~~~G~~   92 (105)
T 1fb6_A           77 LFFKNGERKESIIGAV   92 (105)
T ss_dssp             EEEETTEEEEEEEECC
T ss_pred             EEEeCCeEEEEEecCC
Confidence            9999999998887743

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=99.70  E-value=3.1e-17  Score=127.76  Aligned_cols=90  Identities=20%  Similarity=0.264  Sum_probs=78.9

Q ss_pred             CceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC-CcEEEEEeCCCchhHHHHHHHcCcCCCCe
Q 018973          120 RVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN-DVEFILVMGDESEKTKELCEREKIKKVPH  198 (348)
Q Consensus       120 ~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~-~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt  198 (348)
                      .+.++ +.++|++.+. ..+++++|+||++||++|+.+.|.+++++++++ ++.|+.||+++.   .+++++|+|+++||
T Consensus         3 ~v~~l-~~~~~~~~~~-~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~v~~~Pt   77 (107)
T 2i4a_A            3 HTLAV-SDSSFDQDVL-KASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDN---PETPNAYQVRSIPT   77 (107)
T ss_dssp             CEEEC-CTTTHHHHTT-TCSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTSEEEEEEETTTC---CHHHHHTTCCSSSE
T ss_pred             ceeec-chhhhhHHHH-hCCCEEEEEEECCCChhHHHHhHHHHHHHHHhCCcEEEEEEECCCC---HHHHHhcCCCccCE
Confidence            45666 7888987763 268999999999999999999999999999997 499999999984   45999999999999


Q ss_pred             EEEeeccccccccccC
Q 018973          199 FSFYKSMEKIHEEEGI  214 (348)
Q Consensus       199 ~~~~~~g~~v~~~~G~  214 (348)
                      +++|++|+.+.++.|.
T Consensus        78 ~~~~~~G~~~~~~~G~   93 (107)
T 2i4a_A           78 LMLVRDGKVIDKKVGA   93 (107)
T ss_dssp             EEEEETTEEEEEEESC
T ss_pred             EEEEeCCEEEEEecCC
Confidence            9999999999887774

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=99.70  E-value=2.2e-17  Score=133.07  Aligned_cols=93  Identities=22%  Similarity=0.294  Sum_probs=80.1

Q ss_pred             CceEecCHHHHHHHHHhcCCCEEEEEEeCC-------CCHHHHhhhhHHHHHHHHcC-CcEEEEEeC-------CCchhH
Q 018973          120 RVKKVHSIEEFDEALRLAKNKLVVVEFAAS-------RSLDSSKIYPFMVDLSRQCN-DVEFILVMG-------DESEKT  184 (348)
Q Consensus       120 ~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~-------wC~~C~~~~p~l~~la~~~~-~v~f~~vd~-------d~~~~~  184 (348)
                      ..+.+.+.++|++.+.++++++|+|+|||+       ||++|+.+.|.|++++++++ ++.|+.||+       |+   .
T Consensus         5 ~~v~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~~~d~---~   81 (123)
T 1wou_A            5 EEVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDP---N   81 (123)
T ss_dssp             EEEEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCT---T
T ss_pred             eeEEeccHHHHHHHHHHhCCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCCCcEEEEEECCCchhhhch---h
Confidence            345677999999999976799999999999       99999999999999999996 599999999       55   4


Q ss_pred             HHHHHHcCcCCCCeEEEeeccccccccccCC
Q 018973          185 KELCEREKIKKVPHFSFYKSMEKIHEEEGIG  215 (348)
Q Consensus       185 ~~l~~~~~V~~~Pt~~~~~~g~~v~~~~G~~  215 (348)
                      .+++++|+|+++||+++|++|..+....|.+
T Consensus        82 ~~~~~~~~i~~~Pt~~~~~~~~~~~g~~~~~  112 (123)
T 1wou_A           82 NDFRKNLKVTAVPTLLKYGTPQKLVESECLQ  112 (123)
T ss_dssp             CHHHHHHCCCSSSEEEETTSSCEEEGGGGGC
T ss_pred             HHHHHHCCCCeeCEEEEEcCCceEeccccCC
Confidence            5699999999999999998876665554433

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=99.70  E-value=8.7e-17  Score=129.63  Aligned_cols=91  Identities=14%  Similarity=0.154  Sum_probs=83.7

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEE--CCCchhHHHHHHhCCCCccceEEEEe-CCeEEEEEeC
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN--GDENDSCMQFLRDMNVVEVPTFLFIR-DGQIRGRYVG  328 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd--~~~~~~~~~l~~~~~V~~~PTl~~~~-~G~~v~~~~G  328 (348)
                      .+++++|+||++||++|+.+.|.+.++++++++++.|+.||  ++++.+   ++++|+|.++||+++++ +|+++.++.|
T Consensus        25 ~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~d~~~~---~~~~~~v~~~Pt~~~~~~~G~~~~~~~G  101 (126)
T 2l57_A           25 EGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEKNID---LAYKYDANIVPTTVFLDKEGNKFYVHQG  101 (126)
T ss_dssp             SSSCEEEEEECSSCHHHHHHHHHHHHHHHHSSSSCEEEEEETTSSHHHH---HHHHTTCCSSSEEEEECTTCCEEEEEES
T ss_pred             CCCcEEEEEECCCCccHHHHHHHHHHHHHHhcCCeEEEEEeCCCCchHH---HHHHcCCcceeEEEEECCCCCEEEEecC
Confidence            57899999999999999999999999999997779999999  777666   99999999999999998 9999999999


Q ss_pred             C-ChHHHHHHHHHHhCCC
Q 018973          329 S-GKGELIGEILRYQGVR  345 (348)
Q Consensus       329 ~-~~~~L~~~l~~~~~~~  345 (348)
                      . +.++|.++|+++++..
T Consensus       102 ~~~~~~l~~~l~~~~~~~  119 (126)
T 2l57_A          102 LMRKNNIETILNSLGVKE  119 (126)
T ss_dssp             CCCHHHHHHHHHHHCCCC
T ss_pred             CCCHHHHHHHHHHHhccc
Confidence            8 9999999999987643

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=99.70  E-value=4.6e-17  Score=128.45  Aligned_cols=91  Identities=19%  Similarity=0.267  Sum_probs=80.6

Q ss_pred             CCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCC
Q 018973          119 ERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVP  197 (348)
Q Consensus       119 ~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~P  197 (348)
                      +.+.++ +.++|++.+. ..+++++|+||++||++|+.+.|.|+++++++++ +.|+.||+++   ..+++++|+|+++|
T Consensus         7 ~~v~~l-~~~~~~~~~~-~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~---~~~~~~~~~v~~~P   81 (115)
T 1thx_A            7 KGVITI-TDAEFESEVL-KAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDP---NPTTVKKYKVEGVP   81 (115)
T ss_dssp             CSEEEC-CGGGHHHHTT-TCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTT---CHHHHHHTTCCSSS
T ss_pred             CceEEe-eccchhhHhh-cCCceEEEEEECCCCHHHHHhHHHHHHHHHHhCCcEEEEEEEcCC---CHHHHHHcCCCcee
Confidence            347777 8899998763 2689999999999999999999999999999975 9999999998   45699999999999


Q ss_pred             eEEEeeccccccccccC
Q 018973          198 HFSFYKSMEKIHEEEGI  214 (348)
Q Consensus       198 t~~~~~~g~~v~~~~G~  214 (348)
                      |+++|++|+.+.++.|.
T Consensus        82 t~~~~~~G~~~~~~~g~   98 (115)
T 1thx_A           82 ALRLVKGEQILDSTEGV   98 (115)
T ss_dssp             EEEEEETTEEEEEEESC
T ss_pred             EEEEEcCCEEEEEecCC
Confidence            99999999998877774

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=99.70  E-value=1.1e-17  Score=148.57  Aligned_cols=96  Identities=19%  Similarity=0.190  Sum_probs=86.1

Q ss_pred             CCCCCceEecCHHHHHHHHHhc-CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcC
Q 018973          116 PRDERVKKVHSIEEFDEALRLA-KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIK  194 (348)
Q Consensus       116 ~~~~~v~~v~s~~~f~~~l~~~-~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~  194 (348)
                      ...+.|.++.+.++|.+.+.+. ++++|||+|||+||++|+.+.|.|++++++|+++.|++||++ .   .+++++|+|+
T Consensus        96 ~~~g~v~~i~~~~~f~~~v~~~~~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~~v~f~~vd~~-~---~~l~~~~~i~  171 (217)
T 2trc_P           96 PRYGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKIRAS-N---TGAGDRFSSD  171 (217)
T ss_dssp             CCCCSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCTTSEEEEEEHH-H---HTCSTTSCGG
T ss_pred             cCCCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEEECC-c---HHHHHHCCCC
Confidence            3567899998999999998764 369999999999999999999999999999999999999987 3   3589999999


Q ss_pred             CCCeEEEeeccccccccccCC
Q 018973          195 KVPHFSFYKSMEKIHEEEGIG  215 (348)
Q Consensus       195 ~~Pt~~~~~~g~~v~~~~G~~  215 (348)
                      ++||+++|++|+.+.++.|..
T Consensus       172 ~~PTl~~~~~G~~v~~~~G~~  192 (217)
T 2trc_P          172 VLPTLLVYKGGELISNFISVA  192 (217)
T ss_dssp             GCSEEEEEETTEEEEEETTGG
T ss_pred             CCCEEEEEECCEEEEEEeCCc
Confidence            999999999999999888854

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.70  E-value=7.4e-18  Score=138.27  Aligned_cols=101  Identities=12%  Similarity=0.231  Sum_probs=86.4

Q ss_pred             eeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchhHHHHHHhCCCC--
Q 018973          233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDSCMQFLRDMNVV--  309 (348)
Q Consensus       233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~~~~l~~~~~V~--  309 (348)
                      +..+ +.++|++.+...  .+++++|+||++||++|+.+.|.|.++++++.+ ++.|+.||++++++   ++++|+|.  
T Consensus         9 v~~l-~~~~f~~~~~~~--~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~---~~~~~~v~~~   82 (137)
T 2dj0_A            9 IKYF-NDKTIDEELERD--KRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTD---VSTRYKVSTS   82 (137)
T ss_dssp             CEEC-CTTHHHHHHHHS--TTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTTCHH---HHHHTTCCCC
T ss_pred             EEEc-cHhhHHHHHhcC--CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCccCHH---HHHHccCccc
Confidence            3344 568888888754  456999999999999999999999999999975 79999999999887   99999999  


Q ss_pred             ----ccceEEEEeCCeEEEEEeCC-ChHHHHHHHH
Q 018973          310 ----EVPTFLFIRDGQIRGRYVGS-GKGELIGEIL  339 (348)
Q Consensus       310 ----~~PTl~~~~~G~~v~~~~G~-~~~~L~~~l~  339 (348)
                          ++||+++|++|+++.++.|. +.++|.++|.
T Consensus        83 ~~~~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~  117 (137)
T 2dj0_A           83 PLTKQLPTLILFQGGKEAMRRPQIDKKGRAVSWTF  117 (137)
T ss_dssp             SSSSCSSEEEEESSSSEEEEESCBCSSSCBCCCCC
T ss_pred             CCcCCCCEEEEEECCEEEEEecCcCchHHHHHHHh
Confidence                99999999999999999998 6665555543

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=99.70  E-value=7.2e-16  Score=137.58  Aligned_cols=204  Identities=11%  Similarity=0.116  Sum_probs=153.6

Q ss_pred             CCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCe
Q 018973          119 ERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPH  198 (348)
Q Consensus       119 ~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt  198 (348)
                      ..++++.|.+++++.+.  .++.+||-|+++||   ..+.+.|.++|+.+.++.|+...      .++++++|+|+. |+
T Consensus         9 ~~~~~l~s~~~~~~~l~--~~~v~vVgff~~~~---~~~~~~f~~~A~~l~~~~F~~t~------~~~v~~~~~v~~-p~   76 (227)
T 4f9z_D            9 QEPTWLTDVPAAMEFIA--ATEVAVIGFFQDLE---IPAVPILHSMVQKFPGVSFGIST------DSEVLTHYNITG-NT   76 (227)
T ss_dssp             CCCEECCSHHHHHHHHH--TSSEEEEEECSCSC---STHHHHHHHHTTTCTTSEEEEEC------CHHHHHHTTCCS-SE
T ss_pred             CCCeeeCCHHHHHHHHh--cCCeEEEEEecCCC---chhHHHHHHHHHhCCCceEEEEC------CHHHHHHcCCCC-Ce
Confidence            35788999999999987  68999999999995   68899999999999779998764      235999999998 99


Q ss_pred             EEEeeccc-ccccccc-----CCCCcccccccccCCCccceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhh
Q 018973          199 FSFYKSME-KIHEEEG-----IGPDQLMGDVLYYGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVY  272 (348)
Q Consensus       199 ~~~~~~g~-~v~~~~G-----~~~~~l~~~v~~~~~~~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~  272 (348)
                      +++|+.+. ....+.|     ...+.|...+...  .. +++..-+.+++..++..   ....+++.|..+||..|....
T Consensus        77 i~lfk~~~~~~~~~~~~~~g~~~~~~l~~fi~~~--~~-plv~e~t~~n~~~~~~~---~~~~~~l~f~~~~~~~~~~~~  150 (227)
T 4f9z_D           77 ICLFRLVDNEQLNLEDEDIESIDATKLSRFIEIN--SL-HMVTEYNPVTVIGLFNS---VIQIHLLLIMNKASPEYEENM  150 (227)
T ss_dssp             EEEEETTTTEEEEECHHHHHTCCHHHHHHHHHHH--CC-CSEEECCHHHHHHHHHS---SCCEEEEEEECTTSTTHHHHH
T ss_pred             EEEEEecCcccccccccccCCCCHHHHHHHHHHh--CC-CceeecCcccHHHHhcc---CCceEEEEEEcCCcchHHHHH
Confidence            99998643 2223443     3333444333222  12 33333466777777653   235566677789999999999


Q ss_pred             hHHHHHHHHhCCcEEEEEEECCC--chhHHHHHHhCCCC--ccceEEEEeC-CeEEEEEe-CC-ChHHHHHHHHHHhC
Q 018973          273 PTVIKLSRQMAGTVVFARMNGDE--NDSCMQFLRDMNVV--EVPTFLFIRD-GQIRGRYV-GS-GKGELIGEILRYQG  343 (348)
Q Consensus       273 p~l~~la~~~~~~v~~~~vd~~~--~~~~~~l~~~~~V~--~~PTl~~~~~-G~~v~~~~-G~-~~~~L~~~l~~~~~  343 (348)
                      +.+.++++++++++.|+.+|.+.  +..   +++.||+.  .+|+++++.. +.....+. |. +.+.|.+|++.++.
T Consensus       151 ~~~~~vAk~~k~~i~F~~vd~~~~~~~~---~l~~fgl~~~~~P~~~i~~~~~~~ky~~~~~~~t~~~i~~Fv~~~~~  225 (227)
T 4f9z_D          151 HRYQKAAKLFQGKILFILVDSGMKENGK---VISFFKLKESQLPALAIYQTLDDEWDTLPTAEVSVEHVQNFCDGFLS  225 (227)
T ss_dssp             HHHHHHHHHTTTTCEEEEEETTSGGGHH---HHHHTTCCGGGCSEEEEEESSSCCEEEETTCCCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhCCEEEEEeCCccHhHHH---HHHHcCCCcccCCEEEEEECCCCccccCCcCCCCHHHHHHHHHHHhC
Confidence            99999999999999999999975  444   88999998  8999999863 32234443 55 99999999998864

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=99.69  E-value=7e-17  Score=128.82  Aligned_cols=93  Identities=16%  Similarity=0.223  Sum_probs=80.2

Q ss_pred             CCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCC
Q 018973          118 DERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKV  196 (348)
Q Consensus       118 ~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~  196 (348)
                      ...+..+ +.++|++.+.+ .+++++|+||++||++|+.+.|.|+++++++++ +.|+.||+++   ..+++++|+|+++
T Consensus        11 ~~~v~~l-~~~~~~~~~~~-~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~i~~~   85 (121)
T 2i1u_A           11 KSATIKV-TDASFATDVLS-SNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDT---NPETARNFQVVSI   85 (121)
T ss_dssp             -CCSEEC-CTTTHHHHTTT-CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTT---CHHHHHHTTCCSS
T ss_pred             cccceec-CHHHHHHHHHh-CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCC---CHHHHHhcCCCcC
Confidence            3457777 67888776543 589999999999999999999999999999964 9999999998   4569999999999


Q ss_pred             CeEEEeeccccccccccCC
Q 018973          197 PHFSFYKSMEKIHEEEGIG  215 (348)
Q Consensus       197 Pt~~~~~~g~~v~~~~G~~  215 (348)
                      ||+++|++|+.+.++.|..
T Consensus        86 Pt~~~~~~g~~~~~~~G~~  104 (121)
T 2i1u_A           86 PTLILFKDGQPVKRIVGAK  104 (121)
T ss_dssp             SEEEEEETTEEEEEEESCC
T ss_pred             CEEEEEECCEEEEEecCCC
Confidence            9999999999998887754

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=99.69  E-value=3.3e-17  Score=130.02  Aligned_cols=105  Identities=18%  Similarity=0.410  Sum_probs=91.8

Q ss_pred             eeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhC---CcEEEEEEECCCchhHHHHHHhCCCC
Q 018973          233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMA---GTVVFARMNGDENDSCMQFLRDMNVV  309 (348)
Q Consensus       233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~---~~v~~~~vd~~~~~~~~~l~~~~~V~  309 (348)
                      +..+ +.+++++.+..    +++++|+||++||++|+.+.|.+.++++.+.   .++.|+.+|++++.+   ++++|+|.
T Consensus         9 v~~l-~~~~~~~~~~~----~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~---~~~~~~v~   80 (120)
T 1mek_A            9 VLVL-RKSNFAEALAA----HKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESD---LAQQYGVR   80 (120)
T ss_dssp             EEEC-CTTTHHHHHHH----CSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCS---SHHHHTCC
T ss_pred             cEEe-chhhHHHHHcc----CCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCHH---HHHHCCCC
Confidence            4444 45778887763    6899999999999999999999999999986   359999999999887   99999999


Q ss_pred             ccceEEEEeCCeEE--EEEeCC-ChHHHHHHHHHHhCCC
Q 018973          310 EVPTFLFIRDGQIR--GRYVGS-GKGELIGEILRYQGVR  345 (348)
Q Consensus       310 ~~PTl~~~~~G~~v--~~~~G~-~~~~L~~~l~~~~~~~  345 (348)
                      ++||+++|++|+.+  .++.|. +.++|.++|+++++..
T Consensus        81 ~~Pt~~~~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~~~  119 (120)
T 1mek_A           81 GYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRTGPA  119 (120)
T ss_dssp             SSSEEEEEESSCSSSCEECCCCSSHHHHHHHHHTTSCCC
T ss_pred             cccEEEEEeCCCcCCcccccCccCHHHHHHHHHhccCCC
Confidence            99999999999977  888998 9999999999987754

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=99.69  E-value=8.2e-17  Score=128.36  Aligned_cols=97  Identities=22%  Similarity=0.288  Sum_probs=80.6

Q ss_pred             CChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch---hHHHHHHhCCCCccce
Q 018973          237 HSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND---SCMQFLRDMNVVEVPT  313 (348)
Q Consensus       237 ~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~---~~~~l~~~~~V~~~PT  313 (348)
                      .+.+++++.+.    .+++++|+||++||++|+.+.|.|.+++++++.++  ..+|++...   ...+++++|+|.++||
T Consensus        17 ~~~~~~~~~~~----~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~~v--~~~~~~~~~~~~~~~~~~~~~~i~~~Pt   90 (118)
T 1zma_A           17 TTVVRAQEALD----KKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHI--YFINSEEPSQLNDLQAFRSRYGIPTVPG   90 (118)
T ss_dssp             CCHHHHHHHHH----TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCC--EEEETTCGGGHHHHHHHHHHHTCCSSCE
T ss_pred             CCHHHHHHHHh----CCCeEEEEEECCCCccHHHHHHHHHHHHHhcCCeE--EEEECCCcCcHHHHHHHHHHcCCCCCCe
Confidence            36678888776    36899999999999999999999999999886444  445555432   2346899999999999


Q ss_pred             EEEEeCCeEEEEEeCC-ChHHHHHHHH
Q 018973          314 FLFIRDGQIRGRYVGS-GKGELIGEIL  339 (348)
Q Consensus       314 l~~~~~G~~v~~~~G~-~~~~L~~~l~  339 (348)
                      ++++++|+++.++.|. +.++|.++|+
T Consensus        91 ~~~~~~G~~~~~~~G~~~~~~l~~~l~  117 (118)
T 1zma_A           91 FVHITDGQINVRCDSSMSAQEIKDFAG  117 (118)
T ss_dssp             EEEEETTEEEEECCTTCCHHHHHHHHT
T ss_pred             EEEEECCEEEEEecCCCCHHHHHHHhh
Confidence            9999999999999999 8999998875

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.69  E-value=1.5e-16  Score=130.54  Aligned_cols=105  Identities=15%  Similarity=0.237  Sum_probs=90.4

Q ss_pred             ccceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCC
Q 018973          230 HSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVV  309 (348)
Q Consensus       230 ~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~  309 (348)
                      ...+..+ +.++|++.+... ..+++++|+||++||++|+.+.|.|.++++++. ++.|+.||+++..      ++|+|.
T Consensus         9 ~g~v~~i-~~~~~~~~v~~~-~~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~-~v~~~~vd~~~~~------~~~~i~   79 (135)
T 2dbc_A            9 FGELREI-SGNQYVNEVTNA-EKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFP-ETKFVKAIVNSCI------EHYHDN   79 (135)
T ss_dssp             CCSCEEC-CHHHHHHHTTTC-CSSCEEEEEECCTTCHHHHHHHHHHHHHHHHCS-SEEEEEECCSSSC------SSCCSS
T ss_pred             CCceEEc-CHHHHHHHHHhc-CCCCEEEEEEECCCChHHHHHHHHHHHHHHHCC-CcEEEEEEhhcCc------ccCCCC
Confidence            3456677 788999888754 135799999999999999999999999999985 5999999999864      589999


Q ss_pred             ccceEEEEeCCeEEEEEeCC--------ChHHHHHHHHHHhC
Q 018973          310 EVPTFLFIRDGQIRGRYVGS--------GKGELIGEILRYQG  343 (348)
Q Consensus       310 ~~PTl~~~~~G~~v~~~~G~--------~~~~L~~~l~~~~~  343 (348)
                      ++||+++|++|+++.++.|.        +.++|.++|.++-.
T Consensus        80 ~~Pt~~~~~~G~~v~~~~G~~~~~~~~~~~~~l~~~l~~~~~  121 (135)
T 2dbc_A           80 CLPTIFVYKNGQIEGKFIGIIECGGINLKLEELEWKLSEVGA  121 (135)
T ss_dssp             CCSEEEEESSSSCSEEEESTTTTTCTTCCHHHHHHHHHHHTS
T ss_pred             CCCEEEEEECCEEEEEEEeEEeeCCCcCCHHHHHHHHHHcCC
Confidence            99999999999999999997        47889999988743

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=99.69  E-value=9.4e-17  Score=131.28  Aligned_cols=108  Identities=20%  Similarity=0.360  Sum_probs=91.8

Q ss_pred             eeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHH---HHHHHHhCCcEEEEEEECCCc-hhHHHHHHhCCC
Q 018973          233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTV---IKLSRQMAGTVVFARMNGDEN-DSCMQFLRDMNV  308 (348)
Q Consensus       233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~~~~-~~~~~l~~~~~V  308 (348)
                      ...+.+.++++..+.+.  .+++++|+||++||++|+.+.+.+   .++++.+++ +.++.+|++.. +...+++++|+|
T Consensus        13 f~~~~~~~~~~~~l~~~--~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~~-~~~~~vd~~~~~~~~~~l~~~~~v   89 (134)
T 2fwh_A           13 FTQIKTVDELNQALVEA--KGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALAD-TVLLQANVTANDAQDVALLKHLNV   89 (134)
T ss_dssp             CEECCSHHHHHHHHHHH--TTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTT-SEEEEEECTTCCHHHHHHHHHTTC
T ss_pred             cEEecCHHHHHHHHHHh--cCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcC-cEEEEEeCCCCcchHHHHHHHcCC
Confidence            44577888898888765  478999999999999999999998   899998865 99999999654 334569999999


Q ss_pred             CccceEEEE-eCCeEE--EEEeCC-ChHHHHHHHHHHhC
Q 018973          309 VEVPTFLFI-RDGQIR--GRYVGS-GKGELIGEILRYQG  343 (348)
Q Consensus       309 ~~~PTl~~~-~~G~~v--~~~~G~-~~~~L~~~l~~~~~  343 (348)
                      .++||++++ ++|+++  .++.|. +.++|.++|++..+
T Consensus        90 ~~~Pt~~~~d~~G~~v~~~~~~G~~~~~~l~~~l~~~~~  128 (134)
T 2fwh_A           90 LGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRDRQP  128 (134)
T ss_dssp             CSSSEEEEECTTSCBCGGGCBCSCCCHHHHHHHHHHC--
T ss_pred             CCCCEEEEECCCCCEeeeeeeeeccCHHHHHHHHHhcCc
Confidence            999999999 899998  789999 99999999987654

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.69  E-value=8.5e-17  Score=129.70  Aligned_cols=88  Identities=20%  Similarity=0.213  Sum_probs=75.9

Q ss_pred             CCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchhHHHHHHHcCcCC
Q 018973          118 DERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEKTKELCEREKIKK  195 (348)
Q Consensus       118 ~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~~~~l~~~~~V~~  195 (348)
                      .+.+.++ +.++|+++++   + .++|+|||+||++|+.+.|.|++++++++  ++.|+.||+++   ..+++++|+|++
T Consensus         6 ~~~v~~l-~~~~f~~~~~---~-~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~---~~~~~~~~~v~~   77 (126)
T 1x5e_A            6 SGNVRVI-TDENWRELLE---G-DWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTE---QPGLSGRFIINA   77 (126)
T ss_dssp             CCSEEEC-CTTTHHHHTS---S-EEEEEEECSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTT---CHHHHHHTTCCS
T ss_pred             CCccEEe-cHHHHHHHhC---C-CEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcC---CHHHHHHcCCcc
Confidence            4567777 7899998764   2 49999999999999999999999999986  59999999998   456999999999


Q ss_pred             CCeEEEeeccccccccccC
Q 018973          196 VPHFSFYKSMEKIHEEEGI  214 (348)
Q Consensus       196 ~Pt~~~~~~g~~v~~~~G~  214 (348)
                      +||+++|++|+ +.++.|.
T Consensus        78 ~Pt~~~~~~G~-~~~~~G~   95 (126)
T 1x5e_A           78 LPTIYHCKDGE-FRRYQGP   95 (126)
T ss_dssp             SSEEEEEETTE-EEECCSC
T ss_pred             cCEEEEEeCCe-EEEeecC
Confidence            99999999998 4666663

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=99.69  E-value=5.6e-17  Score=129.80  Aligned_cols=104  Identities=14%  Similarity=0.228  Sum_probs=86.5

Q ss_pred             eeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccc
Q 018973          233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVP  312 (348)
Q Consensus       233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~P  312 (348)
                      +..+ +.+++++.+..   .+++++|+||++||++|+.+.|.+.++++.+++++.|+.+|++++++   ++++|+|.++|
T Consensus         5 v~~l-~~~~f~~~~~~---~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~---~~~~~~v~~~P   77 (122)
T 3aps_A            5 SIDL-TPQTFNEKVLQ---GKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQ---TCQKAGIKAYP   77 (122)
T ss_dssp             SEEC-CHHHHHHHTTT---CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHH---HHHHTTCCSSS
T ss_pred             hhcC-CHHHHHHHHhc---CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCcCCHH---HHHHcCCCccc
Confidence            3344 45777654443   47899999999999999999999999999998789999999999887   99999999999


Q ss_pred             eEEEEeCCeEEEEEeC----C-ChHHHHHHHHHHhC
Q 018973          313 TFLFIRDGQIRGRYVG----S-GKGELIGEILRYQG  343 (348)
Q Consensus       313 Tl~~~~~G~~v~~~~G----~-~~~~L~~~l~~~~~  343 (348)
                      |+++|++|..+.++.|    . +.++|.++|+++++
T Consensus        78 t~~~~~~~~~~~~~~g~~~~~~~~~~l~~~l~~~l~  113 (122)
T 3aps_A           78 SVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLE  113 (122)
T ss_dssp             EEEEEEEEGGGTEEEEEEECCSCHHHHHHHHHHHHH
T ss_pred             eEEEEeCCCccceeeccccCcCCHHHHHHHHHHHHH
Confidence            9999976554555555    3 89999999998764

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.68  E-value=1.4e-16  Score=140.28  Aligned_cols=106  Identities=17%  Similarity=0.365  Sum_probs=94.9

Q ss_pred             eeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccc
Q 018973          233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVP  312 (348)
Q Consensus       233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~P  312 (348)
                      +..+ +.++++..+.    .+++++|+||++||++|+.+.|.|.++++++++++.|+.||++++++   ++++|+|.++|
T Consensus        99 v~~l-~~~~f~~~~~----~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~~~~~~---l~~~~~v~~~P  170 (210)
T 3apq_A           99 IITL-ERREFDAAVN----SGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRM---LCRMKGVNSYP  170 (210)
T ss_dssp             SEEC-CHHHHHHHHH----HSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHH---HHHHTTCCSSS
T ss_pred             eEEe-cHHHHHHHHc----cCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcCceEEEEEECCccHH---HHHHcCCCcCC
Confidence            4444 5678888874    37899999999999999999999999999998789999999999887   99999999999


Q ss_pred             eEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhCCCC
Q 018973          313 TFLFIRDGQIRGRYVGS-GKGELIGEILRYQGVRV  346 (348)
Q Consensus       313 Tl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~~~~  346 (348)
                      |+++|++|+++.++.|. +.++|.++|.++++..+
T Consensus       171 t~~~~~~G~~~~~~~G~~~~~~l~~~i~~~l~~~~  205 (210)
T 3apq_A          171 SLFIFRSGMAAVKYNGDRSKESLVAFAMQHVRSTV  205 (210)
T ss_dssp             EEEEECTTSCCEECCSCCCHHHHHHHHHHHHHCCS
T ss_pred             eEEEEECCCceeEecCCCCHHHHHHHHHHhCcccc
Confidence            99999999999999998 99999999999876554

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=99.68  E-value=4.6e-18  Score=137.48  Aligned_cols=111  Identities=28%  Similarity=0.560  Sum_probs=99.1

Q ss_pred             ccceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCC
Q 018973          230 HSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVV  309 (348)
Q Consensus       230 ~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~  309 (348)
                      ...+..+.+.+++++.+......+++++|+||++||++|+.+.|.|.++++.++ ++.|+.+|++++.+   ++++|+|.
T Consensus        13 ~~~~~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~v~~~~~~~---~~~~~~v~   88 (130)
T 1wmj_A           13 EGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP-GAVFLKVDVDELKE---VAEKYNVE   88 (130)
T ss_dssp             CSSSBCCSSSHHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT-TBCCEECCTTTSGG---GHHHHTCC
T ss_pred             CcceEEcCCHHHHHHHHHHHhhcCCEEEEEEECCCChhHHHHHHHHHHHHHHCC-CCEEEEEeccchHH---HHHHcCCC
Confidence            345777888899999998754468999999999999999999999999999986 59999999999887   99999999


Q ss_pred             ccceEEEEeCCeEEEEEeCCChHHHHHHHHHHhCC
Q 018973          310 EVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQGV  344 (348)
Q Consensus       310 ~~PTl~~~~~G~~v~~~~G~~~~~L~~~l~~~~~~  344 (348)
                      ++||++++++|+++.++.|.+.++|.++|+++++.
T Consensus        89 ~~Pt~~~~~~g~~~~~~~g~~~~~l~~~l~~~~~~  123 (130)
T 1wmj_A           89 AMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGA  123 (130)
T ss_dssp             SSCCCCBCTTTTCCBCCCTTCTTTHHHHHHHHTSS
T ss_pred             ccceEEEEeCCeEEEEEeCCCHHHHHHHHHHHHhc
Confidence            99999999999999999998888999999988754

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=99.68  E-value=2.3e-17  Score=136.75  Aligned_cols=100  Identities=17%  Similarity=0.165  Sum_probs=73.9

Q ss_pred             ChhhHHHHhhhcccCCcEEEEEEeCCC--ChhhhhhhhHHHHHHHHhCCcEE--EEEEECCCchhHHHHHHhCCCCccce
Q 018973          238 SKEDVEKLIDDHKVDQKLIVLDVGLKH--CGPCVKVYPTVIKLSRQMAGTVV--FARMNGDENDSCMQFLRDMNVVEVPT  313 (348)
Q Consensus       238 s~~~~~~~l~~~~~~~k~vvV~F~a~w--C~~C~~~~p~l~~la~~~~~~v~--~~~vd~~~~~~~~~l~~~~~V~~~PT  313 (348)
                      +.++|++.+..    .+.++|+||++|  |++|+.+.|.|+++++++ +++.  |++||++++++   ++++|+|.++||
T Consensus        23 ~~~~f~~~i~~----~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~~v~~~~~~Vd~d~~~~---la~~~~V~~iPT   94 (142)
T 2es7_A           23 EASTVDDWIKR----VGDGVILLSSDPRRTPEVSDNPVMIAELLREF-PQFDWQVAVADLEQSEA---IGDRFNVRRFPA   94 (142)
T ss_dssp             CCC------------CCSEEEEECCCSCC----CCHHHHHHHHHHTC-TTSCCEEEEECHHHHHH---HHHTTTCCSSSE
T ss_pred             ccccHHHHHHh----CCCEEEEEECCCCCCccHHHHHHHHHHHHHHh-cccceeEEEEECCCCHH---HHHhcCCCcCCe
Confidence            34788888864    345788999887  999999999999999999 7788  99999998877   999999999999


Q ss_pred             EEEEeCCeEEEEEeCC-ChHHHHHHHHHHhCCC
Q 018973          314 FLFIRDGQIRGRYVGS-GKGELIGEILRYQGVR  345 (348)
Q Consensus       314 l~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~~~  345 (348)
                      +++|++|+++.++.|. +.++|.++|+++++..
T Consensus        95 ~~~fk~G~~v~~~~G~~~~~~l~~~i~~~l~~~  127 (142)
T 2es7_A           95 TLVFTDGKLRGALSGIHPWAELLTLMRSIVDTP  127 (142)
T ss_dssp             EEEESCC----CEESCCCHHHHHHHHHHHHC--
T ss_pred             EEEEeCCEEEEEEeCCCCHHHHHHHHHHHhccc
Confidence            9999999999999999 9999999999987654

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=99.68  E-value=6.7e-17  Score=143.75  Aligned_cols=94  Identities=15%  Similarity=0.280  Sum_probs=83.1

Q ss_pred             CCCCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcC
Q 018973          116 PRDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIK  194 (348)
Q Consensus       116 ~~~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~  194 (348)
                      .+++.+..+ |.++|++.+.+ ++++|+|+|||+||++|+.+.|.|+++++++++ +.|+.||+|+.+   +++++|+|+
T Consensus         9 ~~~~~~~~l-t~~~f~~~v~~-~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~---~l~~~~~v~   83 (222)
T 3dxb_A            9 PMSDKIIHL-TDDSFDTDVLK-ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP---GTAPKYGIR   83 (222)
T ss_dssp             CCSCCCEEC-CTTTHHHHHTT-CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCT---TTGGGGTCC
T ss_pred             CCCCCceeC-CHHHHHHHHHh-cCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCcEEEEEECCCCH---HHHHHcCCC
Confidence            445566666 89999986543 689999999999999999999999999999987 999999999954   499999999


Q ss_pred             CCCeEEEeeccccccccccC
Q 018973          195 KVPHFSFYKSMEKIHEEEGI  214 (348)
Q Consensus       195 ~~Pt~~~~~~g~~v~~~~G~  214 (348)
                      ++||+++|++|+.+.++.|.
T Consensus        84 ~~Pt~~~~~~G~~~~~~~G~  103 (222)
T 3dxb_A           84 GIPTLLLFKNGEVAATKVGA  103 (222)
T ss_dssp             SBSEEEEEETTEEEEEEESC
T ss_pred             cCCEEEEEECCeEEEEeccc
Confidence            99999999999999888885

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=99.68  E-value=1.3e-16  Score=127.27  Aligned_cols=90  Identities=12%  Similarity=0.123  Sum_probs=74.4

Q ss_pred             ceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCc---hhHHHHHHHcCcCCCC
Q 018973          121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDES---EKTKELCEREKIKKVP  197 (348)
Q Consensus       121 v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~---~~~~~l~~~~~V~~~P  197 (348)
                      +..+ +.++|++.+.  .+++++|+|||+||++|+.+.|.|++++++++. .+..+|+++.   ++..+++++|+|+++|
T Consensus        14 ~~~~-~~~~~~~~~~--~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~i~~~P   89 (118)
T 1zma_A           14 LEVT-TVVRAQEALD--KKETATFFIGRKTCPYCRKFAGTLSGVVAETKA-HIYFINSEEPSQLNDLQAFRSRYGIPTVP   89 (118)
T ss_dssp             SEEC-CHHHHHHHHH--TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCC-CCEEEETTCGGGHHHHHHHHHHHTCCSSC
T ss_pred             hhcC-CHHHHHHHHh--CCCeEEEEEECCCCccHHHHHHHHHHHHHhcCC-eEEEEECCCcCcHHHHHHHHHHcCCCCCC
Confidence            4444 8999999987  578999999999999999999999999998863 3344555432   3356899999999999


Q ss_pred             eEEEeeccccccccccC
Q 018973          198 HFSFYKSMEKIHEEEGI  214 (348)
Q Consensus       198 t~~~~~~g~~v~~~~G~  214 (348)
                      |+++|++|+.+.++.|.
T Consensus        90 t~~~~~~G~~~~~~~G~  106 (118)
T 1zma_A           90 GFVHITDGQINVRCDSS  106 (118)
T ss_dssp             EEEEEETTEEEEECCTT
T ss_pred             eEEEEECCEEEEEecCC
Confidence            99999999999888874

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=99.67  E-value=7.8e-17  Score=130.54  Aligned_cols=74  Identities=18%  Similarity=0.240  Sum_probs=68.7

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeeccccccccccC
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGI  214 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~~v~~~~G~  214 (348)
                      ++++|+|+|||+||++|+.+.|.++++++++++ +.|+.||+|+   ..+++++|+|+++||+++|++|+.+.++.|.
T Consensus        41 ~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~---~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~  115 (128)
T 3ul3_B           41 KNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDK---NESLARKFSVKSLPTIILLKNKTMLARKDHF  115 (128)
T ss_dssp             CCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGEEEEEEEGGG---CHHHHHHTTCCSSSEEEEEETTEEEEEESSC
T ss_pred             cCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCC---CHHHHHHcCCCCcCEEEEEECCEEEEEecCC
Confidence            689999999999999999999999999999974 9999999998   5569999999999999999999999888773

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=99.67  E-value=2.9e-17  Score=136.20  Aligned_cols=90  Identities=11%  Similarity=0.163  Sum_probs=64.1

Q ss_pred             CceEecCHHHHHHHHHhcCCCEEEEEEeCCC--CHHHHhhhhHHHHHHHHcCCcE--EEEEeCCCchhHHHHHHHcCcCC
Q 018973          120 RVKKVHSIEEFDEALRLAKNKLVVVEFAASR--SLDSSKIYPFMVDLSRQCNDVE--FILVMGDESEKTKELCEREKIKK  195 (348)
Q Consensus       120 ~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~w--C~~C~~~~p~l~~la~~~~~v~--f~~vd~d~~~~~~~l~~~~~V~~  195 (348)
                      .+..+ +.++|++.+.  .++.+||+|+++|  |++|+.+.|.|++++++|+++.  |++||+|+   .++++++|+|++
T Consensus        18 ~~~~l-~~~~f~~~i~--~~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~~~v~~~~~~Vd~d~---~~~la~~~~V~~   91 (142)
T 2es7_A           18 GWQPV-EASTVDDWIK--RVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQ---SEAIGDRFNVRR   91 (142)
T ss_dssp             TCEEC-CCC----------CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHHH---HHHHHHTTTCCS
T ss_pred             cCccc-ccccHHHHHH--hCCCEEEEEECCCCCCccHHHHHHHHHHHHHHhcccceeEEEEECCC---CHHHHHhcCCCc
Confidence            35555 5699999987  4556888999987  9999999999999999995588  99999998   667999999999


Q ss_pred             CCeEEEeeccccccccccCC
Q 018973          196 VPHFSFYKSMEKIHEEEGIG  215 (348)
Q Consensus       196 ~Pt~~~~~~g~~v~~~~G~~  215 (348)
                      +||+++|++|+.+.++.|..
T Consensus        92 iPT~~~fk~G~~v~~~~G~~  111 (142)
T 2es7_A           92 FPATLVFTDGKLRGALSGIH  111 (142)
T ss_dssp             SSEEEEESCC----CEESCC
T ss_pred             CCeEEEEeCCEEEEEEeCCC
Confidence            99999999999999998853

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=99.67  E-value=5.9e-17  Score=128.51  Aligned_cols=89  Identities=19%  Similarity=0.321  Sum_probs=78.0

Q ss_pred             CCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC----CcEEEEEeCCCchhHHHHHHHcCcC
Q 018973          119 ERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN----DVEFILVMGDESEKTKELCEREKIK  194 (348)
Q Consensus       119 ~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~----~v~f~~vd~d~~~~~~~l~~~~~V~  194 (348)
                      +.+.++ +.++|++.+.  ++++++|+||++||++|+.+.|.|+++++++.    ++.|+.||+++..   +++++|+|+
T Consensus         7 ~~v~~l-~~~~~~~~~~--~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~---~~~~~~~v~   80 (120)
T 1mek_A            7 DHVLVL-RKSNFAEALA--AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEES---DLAQQYGVR   80 (120)
T ss_dssp             TTEEEC-CTTTHHHHHH--HCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCC---SSHHHHTCC
T ss_pred             CCcEEe-chhhHHHHHc--cCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCH---HHHHHCCCC
Confidence            456666 8899999887  58999999999999999999999999999875    4999999999854   499999999


Q ss_pred             CCCeEEEeeccccc--ccccc
Q 018973          195 KVPHFSFYKSMEKI--HEEEG  213 (348)
Q Consensus       195 ~~Pt~~~~~~g~~v--~~~~G  213 (348)
                      ++||+++|++|+.+  .++.|
T Consensus        81 ~~Pt~~~~~~g~~~~~~~~~g  101 (120)
T 1mek_A           81 GYPTIKFFRNGDTASPKEYTA  101 (120)
T ss_dssp             SSSEEEEEESSCSSSCEECCC
T ss_pred             cccEEEEEeCCCcCCcccccC
Confidence            99999999999877  66655

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=99.67  E-value=2.3e-16  Score=135.05  Aligned_cols=110  Identities=11%  Similarity=0.221  Sum_probs=91.6

Q ss_pred             cceeecCChhhHHHHhhhcccCCcEEEEEEeC-------CCChhhhhhhhHHHHHHHHhC-----CcEEEEEEECCCchh
Q 018973          231 SAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGL-------KHCGPCVKVYPTVIKLSRQMA-----GTVVFARMNGDENDS  298 (348)
Q Consensus       231 ~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a-------~wC~~C~~~~p~l~~la~~~~-----~~v~~~~vd~~~~~~  298 (348)
                      ..++.+ +.++|++++...  .+.+++|+|||       +||++|+.+.|.|+++++++.     +++.|++||++++++
T Consensus        18 ~~vi~l-t~~nF~~~v~~~--~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~~~   94 (178)
T 3ga4_A           18 TGVITV-TADNYPLLSRGV--PGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEVPQ   94 (178)
T ss_dssp             TSEEEC-CTTTHHHHTTCC--TTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTCHH
T ss_pred             CCCEEC-CHHHHHHHHccc--CCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccCHH
Confidence            446665 568898887632  46789999999       499999999999999999987     789999999999988


Q ss_pred             HHHHHHhCCCCccceEEEEeCCeEE------------EEE---e--CCChHHHHHHHHHHhCCCC
Q 018973          299 CMQFLRDMNVVEVPTFLFIRDGQIR------------GRY---V--GSGKGELIGEILRYQGVRV  346 (348)
Q Consensus       299 ~~~l~~~~~V~~~PTl~~~~~G~~v------------~~~---~--G~~~~~L~~~l~~~~~~~~  346 (348)
                         ++++|+|+++||+++|++|...            ..|   .  |.+.+.|.+||.+.++..+
T Consensus        95 ---la~~~~I~siPtl~~F~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~ae~la~fi~~~t~~~i  156 (178)
T 3ga4_A           95 ---LVKDLKLQNVPHLVVYPPAESNKQSQFEWKTSPFYQYSLVPENAENTLQFGDFLAKILNISI  156 (178)
T ss_dssp             ---HHHHTTCCSSCEEEEECCCCGGGGGGCCTTTSCCEEECCCGGGTTCHHHHHHHHHHHHTCCC
T ss_pred             ---HHHHcCCCCCCEEEEEcCCCCCCccccccccCCcceeecccCCCcCHHHHHHHHHHhcCCCc
Confidence               9999999999999999987522            233   1  3489999999999988654

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.67  E-value=2.6e-16  Score=138.62  Aligned_cols=91  Identities=16%  Similarity=0.299  Sum_probs=81.7

Q ss_pred             CCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCC
Q 018973          118 DERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKV  196 (348)
Q Consensus       118 ~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~  196 (348)
                      ...+..+ +.++|+..+.  ++++|||+|||+||++|+.+.|.|+++++++++ +.|+.||+++   ..+++++|+|+++
T Consensus        96 ~~~v~~l-~~~~f~~~~~--~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~~~---~~~l~~~~~v~~~  169 (210)
T 3apq_A           96 DPEIITL-ERREFDAAVN--SGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGD---DRMLCRMKGVNSY  169 (210)
T ss_dssp             CTTSEEC-CHHHHHHHHH--HSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTT---CHHHHHHTTCCSS
T ss_pred             CCceEEe-cHHHHHHHHc--cCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcCceEEEEEECCc---cHHHHHHcCCCcC
Confidence            3456666 8999999985  689999999999999999999999999999976 9999999998   5569999999999


Q ss_pred             CeEEEeeccccccccccC
Q 018973          197 PHFSFYKSMEKIHEEEGI  214 (348)
Q Consensus       197 Pt~~~~~~g~~v~~~~G~  214 (348)
                      ||+++|++|+.+.++.|.
T Consensus       170 Pt~~~~~~G~~~~~~~G~  187 (210)
T 3apq_A          170 PSLFIFRSGMAAVKYNGD  187 (210)
T ss_dssp             SEEEEECTTSCCEECCSC
T ss_pred             CeEEEEECCCceeEecCC
Confidence            999999999998888873

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=99.66  E-value=3.6e-16  Score=122.96  Aligned_cols=102  Identities=15%  Similarity=0.193  Sum_probs=87.1

Q ss_pred             cceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhH-HHHHHhCCCC
Q 018973          231 SAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSC-MQFLRDMNVV  309 (348)
Q Consensus       231 ~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~-~~l~~~~~V~  309 (348)
                      ..+..+.+.++|+++++.    +++++|+|+++||++|+.+.|.++++++.  +++.|+++|++++.++ .+++++|||.
T Consensus         6 ~~~~~i~s~e~f~~ii~~----~~~vvi~khatwCgpc~~~~~~~e~~~~~--~~v~~~~vdVde~r~~Sn~IA~~~~V~   79 (112)
T 3iv4_A            6 GVAIKLSSIDQFEQVIEE----NKYVFVLKHSETCPISANAYDQFNKFLYE--RDMDGYYLIVQQERDLSDYIAKKTNVK   79 (112)
T ss_dssp             GCEEECCSHHHHHHHHHH----CSEEEEEEECTTCHHHHHHHHHHHHHHHH--HTCCEEEEEGGGGHHHHHHHHHHHTCC
T ss_pred             cceeecCCHHHHHHHHhc----CCCEEEEEECCcCHhHHHHHHHHHHHhcc--CCceEEEEEeecCchhhHHHHHHhCCc
Confidence            356778899999999874    79999999999999999999999999885  5699999999988642 3589999999


Q ss_pred             -ccceEEEEeCCeEEEEEe-CC-ChHHHHHHH
Q 018973          310 -EVPTFLFIRDGQIRGRYV-GS-GKGELIGEI  338 (348)
Q Consensus       310 -~~PTl~~~~~G~~v~~~~-G~-~~~~L~~~l  338 (348)
                       ..||+++|++|+.+.+.. +. +.+.|.+.+
T Consensus        80 h~sPq~il~k~G~~v~~~SH~~I~~~~l~~~~  111 (112)
T 3iv4_A           80 HESPQAFYFVNGEMVWNRDHGDINVSSLAQAE  111 (112)
T ss_dssp             CCSSEEEEEETTEEEEEEEGGGCSHHHHHHHT
T ss_pred             cCCCeEEEEECCEEEEEeeccccCHHHHHHhh
Confidence             599999999999998854 44 888777654

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=99.66  E-value=1.8e-16  Score=129.04  Aligned_cols=91  Identities=12%  Similarity=0.090  Sum_probs=77.1

Q ss_pred             cCHHHHHHHHHhc--CCCEEEEEEeCCCCHHHHhhhhHHH--HHHHHcC-CcEEEEEeCCCchhHHHHHHHcCc---CCC
Q 018973          125 HSIEEFDEALRLA--KNKLVVVEFAASRSLDSSKIYPFMV--DLSRQCN-DVEFILVMGDESEKTKELCEREKI---KKV  196 (348)
Q Consensus       125 ~s~~~f~~~l~~~--~~k~vvV~F~a~wC~~C~~~~p~l~--~la~~~~-~v~f~~vd~d~~~~~~~l~~~~~V---~~~  196 (348)
                      .+.++|++.+..+  .+++|+|+||++||++|+.+.|.|+  ++++++. ++.|+.||+++.++..+++++|+|   .++
T Consensus        13 ~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~~~vd~~~~~~~~~l~~~~~v~~~~~~   92 (133)
T 3fk8_A           13 DAWTQVKKALAAGKRTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQDGI   92 (133)
T ss_dssp             CHHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHHHCEEEEEECTTTTSSHHHHHHTTCGGGGCS
T ss_pred             ChHhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcCCEEEEEEeCCcccchHHHHHHhCCccCCcc
Confidence            4567888877653  4899999999999999999999999  9999884 599999999332226679999999   999


Q ss_pred             CeEEEe-eccccccccccCC
Q 018973          197 PHFSFY-KSMEKIHEEEGIG  215 (348)
Q Consensus       197 Pt~~~~-~~g~~v~~~~G~~  215 (348)
                      ||+++| ++|+.+.+..|..
T Consensus        93 Pt~~~~d~~G~~~~~~~g~~  112 (133)
T 3fk8_A           93 PAVVVVNSDGKVRYTTKGGE  112 (133)
T ss_dssp             SEEEEECTTSCEEEECCSCT
T ss_pred             ceEEEECCCCCEEEEecCCc
Confidence            999999 8999998888744

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=99.66  E-value=2e-16  Score=130.05  Aligned_cols=90  Identities=18%  Similarity=0.256  Sum_probs=66.9

Q ss_pred             CCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC-CcEEEEEeCCCchhHHHHHHHcCcCCCC
Q 018973          119 ERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN-DVEFILVMGDESEKTKELCEREKIKKVP  197 (348)
Q Consensus       119 ~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~-~v~f~~vd~d~~~~~~~l~~~~~V~~~P  197 (348)
                      +.+.++ +.++|++.+.+ .++ ++|+||++||++|+.+.|.|++++++++ ++.|+.||+++   ..+++++|+|+++|
T Consensus        33 ~~v~~l-~~~~~~~~~~~-~~~-vvv~f~~~~C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~---~~~l~~~~~v~~~P  106 (140)
T 1v98_A           33 PWVVEA-DEKGFAQEVAG-APL-TLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDE---HPGLAARYGVRSVP  106 (140)
T ss_dssp             -----------------C-CCE-EEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTT---CHHHHHHTTCCSSS
T ss_pred             CccccC-CHHHHHHHHHc-CCC-EEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCC---CHHHHHHCCCCccC
Confidence            567777 78899988874 344 9999999999999999999999999998 49999999998   45699999999999


Q ss_pred             eEEEeeccccccccccC
Q 018973          198 HFSFYKSMEKIHEEEGI  214 (348)
Q Consensus       198 t~~~~~~g~~v~~~~G~  214 (348)
                      |+++|++|+.+.++.|.
T Consensus       107 t~~~~~~G~~~~~~~G~  123 (140)
T 1v98_A          107 TLVLFRRGAPVATWVGA  123 (140)
T ss_dssp             EEEEEETTEEEEEEESC
T ss_pred             EEEEEeCCcEEEEEeCC
Confidence            99999999998888774

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=99.66  E-value=1.8e-16  Score=128.29  Aligned_cols=106  Identities=22%  Similarity=0.385  Sum_probs=86.7

Q ss_pred             hhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHH---HHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEE
Q 018973          239 KEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTV---IKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL  315 (348)
Q Consensus       239 ~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~  315 (348)
                      ..++++.+......+++++|+||++||++|+.+.|.+   .++.+.+..++.++.+|++... ..+++++|+|.++||++
T Consensus        13 ~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~~~v~~~Pt~~   91 (130)
T 2kuc_A           13 ELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGE-GVELRKKYGVHAYPTLL   91 (130)
T ss_dssp             CCCHHHHHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSSSTT-HHHHHHHTTCCSSCEEE
T ss_pred             cCCHHHHHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcCeEEEEEecCCcc-hHHHHHHcCCCCCCEEE
Confidence            3456666543323578999999999999999999998   7777776566889999998422 12499999999999999


Q ss_pred             EE-eCCeEEEEEeCC-ChHHHHHHHHHHhCCC
Q 018973          316 FI-RDGQIRGRYVGS-GKGELIGEILRYQGVR  345 (348)
Q Consensus       316 ~~-~~G~~v~~~~G~-~~~~L~~~l~~~~~~~  345 (348)
                      ++ ++|+++.++.|. +.++|.++|+++++.+
T Consensus        92 ~~d~~G~~~~~~~G~~~~~~l~~~l~~~~~~~  123 (130)
T 2kuc_A           92 FINSSGEVVYRLVGAEDAPELLKKVKLGVESE  123 (130)
T ss_dssp             EECTTSCEEEEEESCCCHHHHHHHHHHHHSCC
T ss_pred             EECCCCcEEEEecCCCCHHHHHHHHHHHHHhc
Confidence            99 799999999999 9999999999987654

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=99.65  E-value=1.8e-16  Score=134.96  Aligned_cols=90  Identities=8%  Similarity=0.024  Sum_probs=74.6

Q ss_pred             CHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcC---cCCCCeEEEe
Q 018973          126 SIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREK---IKKVPHFSFY  202 (348)
Q Consensus       126 s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~---V~~~Pt~~~~  202 (348)
                      ..+++.+.+.+.++++++|+|||+|||||+.+.|.|++++++++++.|+.||.|+   .++++.+|+   |+++||++++
T Consensus        41 ~~~~~~~~l~~~~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~~v~~~~v~~d~---~~~~~~~~~~~~v~~iPt~i~~  117 (167)
T 1z6n_A           41 LPSALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQPNIELAIISKGR---AEDDLRQRLALERIAIPLVLVL  117 (167)
T ss_dssp             CCHHHHHHHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCTTEEEEEECHHH---HHHHTTTTTTCSSCCSSEEEEE
T ss_pred             CCHHHHHHHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHCCCcEEEEEECCC---CHHHHHHHHHcCCCCcCeEEEE
Confidence            3455566677667899999999999999999999999999999999999999887   566888897   9999999999


Q ss_pred             ecc-ccccccccCCCCcc
Q 018973          203 KSM-EKIHEEEGIGPDQL  219 (348)
Q Consensus       203 ~~g-~~v~~~~G~~~~~l  219 (348)
                      ++| +.+.++ |..+..+
T Consensus       118 ~~~G~~~~~~-g~~p~~~  134 (167)
T 1z6n_A          118 DEEFNLLGRF-VERPQAV  134 (167)
T ss_dssp             CTTCCEEEEE-ESSCHHH
T ss_pred             CCCCCEEEEE-cCCCHHH
Confidence            874 777666 4444333

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=99.65  E-value=7.3e-17  Score=130.18  Aligned_cols=90  Identities=14%  Similarity=0.265  Sum_probs=74.2

Q ss_pred             CceEecCHHHHHHHHHhcCCCEEEEEEeCCCCH--------------HHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhH
Q 018973          120 RVKKVHSIEEFDEALRLAKNKLVVVEFAASRSL--------------DSSKIYPFMVDLSRQCND-VEFILVMGDESEKT  184 (348)
Q Consensus       120 ~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~--------------~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~  184 (348)
                      .+.++ +.++|++.+. .++++++|+|||+||+              +|+.+.|.++++++++++ +.|++||+|+.+  
T Consensus         4 ~v~~l-~~~~f~~~~~-~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~~~~~~vd~d~~~--   79 (123)
T 1oaz_A            4 KIIHL-TDDSFDTDVL-KADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP--   79 (123)
T ss_dssp             SCEEC-CSTTHHHHTT-SCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC-------CEEEEEETTSCT--
T ss_pred             ccEec-ChhhHHHHHH-hCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCCeEEEEEECCCCH--
Confidence            46666 7888987653 2689999999999999              999999999999999975 999999999954  


Q ss_pred             HHHHHHcCcCCCCeEEEeeccccccccccC
Q 018973          185 KELCEREKIKKVPHFSFYKSMEKIHEEEGI  214 (348)
Q Consensus       185 ~~l~~~~~V~~~Pt~~~~~~g~~v~~~~G~  214 (348)
                       +++++|+|+++||+++|++|+.+.++.|.
T Consensus        80 -~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~  108 (123)
T 1oaz_A           80 -GTAPKYGIRGIPTLLLFKNGEVAATKVGA  108 (123)
T ss_dssp             -TTGGGGTCCBSSEEEEEESSSEEEEEESC
T ss_pred             -HHHHHcCCCccCEEEEEECCEEEEEEeCC
Confidence             59999999999999999999999888874

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=99.64  E-value=4.3e-16  Score=125.48  Aligned_cols=103  Identities=20%  Similarity=0.231  Sum_probs=87.5

Q ss_pred             eeecCChhhHHHHhhhcccCCcEEEEEEeCC-------CChhhhhhhhHHHHHHHHhCCcEEEEEEEC-------CCchh
Q 018973          233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLK-------HCGPCVKVYPTVIKLSRQMAGTVVFARMNG-------DENDS  298 (348)
Q Consensus       233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~-------wC~~C~~~~p~l~~la~~~~~~v~~~~vd~-------~~~~~  298 (348)
                      .+.+.+.+++++.+..+  .+++++|+||++       ||++|+.+.|.|.++++++++++.|+.+|+       +.+.+
T Consensus         6 ~v~~~~~~~~~~~~~~~--~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~~~d~~~~   83 (123)
T 1wou_A            6 EVSVSGFEEFHRAVEQH--NGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNND   83 (123)
T ss_dssp             EEEEESHHHHHHHHHTT--TTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCH
T ss_pred             eEEeccHHHHHHHHHHh--CCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCCCcEEEEEECCCchhhhchhHH
Confidence            44566889999988864  489999999999       999999999999999999977899999999       66666


Q ss_pred             HHHHHHhCCCCccceEEEEeCCeEEEEEeCCChHHHHHHHHH
Q 018973          299 CMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILR  340 (348)
Q Consensus       299 ~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~~~~~L~~~l~~  340 (348)
                         ++++|+|.++||+++|++|..+....|.+.+.|.++|++
T Consensus        84 ---~~~~~~i~~~Pt~~~~~~~~~~~g~~~~~~~~l~~~i~~  122 (123)
T 1wou_A           84 ---FRKNLKVTAVPTLLKYGTPQKLVESECLQANLVEMLFSE  122 (123)
T ss_dssp             ---HHHHHCCCSSSEEEETTSSCEEEGGGGGCHHHHHHHHHC
T ss_pred             ---HHHHCCCCeeCEEEEEcCCceEeccccCCHHHHHHHHhc
Confidence               999999999999999988766554555578888888864

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.64  E-value=4.2e-17  Score=132.52  Aligned_cols=88  Identities=20%  Similarity=0.246  Sum_probs=75.4

Q ss_pred             CCCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC---CcEEEEEeCCCchhHHHHHHHcCc
Q 018973          117 RDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN---DVEFILVMGDESEKTKELCEREKI  193 (348)
Q Consensus       117 ~~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~---~v~f~~vd~d~~~~~~~l~~~~~V  193 (348)
                      ..+.+.++ +.++|++.+.+ .+++++|+|||+||++|+.+.|.|+++++++.   ++.|+.||+++.+   .++++|+|
T Consensus         5 ~~~~v~~l-~~~~~~~~~~~-~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~v   79 (133)
T 2dj3_A            5 SSGPVKVV-VGKTFDAIVMD-PKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATAND---ITNDQYKV   79 (133)
T ss_dssp             SSCSSEEC-CTTTCCCCCTC-TTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTSC---CCCSSCCC
T ss_pred             CCCceEEE-cCCCHHHHhcc-CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcCH---HHHhhcCC
Confidence            34567777 67888887753 58999999999999999999999999999985   4999999999854   48889999


Q ss_pred             CCCCeEEEeecccccc
Q 018973          194 KKVPHFSFYKSMEKIH  209 (348)
Q Consensus       194 ~~~Pt~~~~~~g~~v~  209 (348)
                      +++||+++|++|+.+.
T Consensus        80 ~~~Pt~~~~~~g~~~~   95 (133)
T 2dj3_A           80 EGFPTIYFAPSGDKKN   95 (133)
T ss_dssp             SSSSEEEEECTTCTTS
T ss_pred             CcCCEEEEEeCCCccc
Confidence            9999999999887654

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=99.64  E-value=1.5e-15  Score=145.92  Aligned_cols=106  Identities=19%  Similarity=0.384  Sum_probs=91.7

Q ss_pred             eeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHh------CCcEEEEEEECCCchhHHHHHHhC
Q 018973          233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQM------AGTVVFARMNGDENDSCMQFLRDM  306 (348)
Q Consensus       233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~------~~~v~~~~vd~~~~~~~~~l~~~~  306 (348)
                      +..+ +.++|++.+..    +++++|+||++||++|+.+.|.|+++++.+      .+++.|+.||++++.+   ++++|
T Consensus         7 v~~l-~~~~f~~~~~~----~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~~~---l~~~~   78 (382)
T 2r2j_A            7 ITSL-DTENIDEILNN----ADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSD---IAQRY   78 (382)
T ss_dssp             -CBC-CTTTHHHHHHH----CSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTCHH---HHHHT
T ss_pred             eEEC-CHHHHHHHHhc----CCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCccHH---HHHhc
Confidence            4444 45778887764    689999999999999999999999999998      3459999999999887   99999


Q ss_pred             CCCccceEEEEeCCeEEEE-EeCC-ChHHHHHHHHHHhCCCC
Q 018973          307 NVVEVPTFLFIRDGQIRGR-YVGS-GKGELIGEILRYQGVRV  346 (348)
Q Consensus       307 ~V~~~PTl~~~~~G~~v~~-~~G~-~~~~L~~~l~~~~~~~~  346 (348)
                      +|.++||+++|++|+.+.+ +.|. +.+.|.+++.++++..+
T Consensus        79 ~v~~~Pt~~~f~~G~~~~~~~~G~~~~~~l~~~i~~~~~~~v  120 (382)
T 2r2j_A           79 RISKYPTLKLFRNGMMMKREYRGQRSVKALADYIRQQKSDPI  120 (382)
T ss_dssp             TCCEESEEEEEETTEEEEEECCSCCSHHHHHHHHHHHHSCCC
T ss_pred             CCCcCCEEEEEeCCcEeeeeecCcchHHHHHHHHHHhccCCc
Confidence            9999999999999999874 8898 99999999999886543

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=99.63  E-value=1.4e-16  Score=127.10  Aligned_cols=104  Identities=23%  Similarity=0.349  Sum_probs=86.6

Q ss_pred             eeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC-----cEEEEEEECCCchhHHHHHHhCC
Q 018973          233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG-----TVVFARMNGDENDSCMQFLRDMN  307 (348)
Q Consensus       233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-----~v~~~~vd~~~~~~~~~l~~~~~  307 (348)
                      +..+ +.++|++.+..   .+++++|+||++||++|+.+.|.|.++++++++     ++.|+.+|+++++    +++  +
T Consensus         9 v~~l-~~~~f~~~v~~---~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~----~~~--~   78 (121)
T 2djj_A            9 VTVV-VAKNYNEIVLD---DTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND----VPD--E   78 (121)
T ss_dssp             SEEC-CTTTTTTSSSC---TTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC----CSS--C
T ss_pred             eEEe-cccCHHHHhhc---CCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcccc----ccc--c
Confidence            4444 44667766533   478999999999999999999999999999976     7999999999876    454  9


Q ss_pred             CCccceEEEEeCCeE--EEEEeCC-ChHHHHHHHHHHhCCCC
Q 018973          308 VVEVPTFLFIRDGQI--RGRYVGS-GKGELIGEILRYQGVRV  346 (348)
Q Consensus       308 V~~~PTl~~~~~G~~--v~~~~G~-~~~~L~~~l~~~~~~~~  346 (348)
                      |.++||+++|++|..  +.++.|. +.++|.++|+++++..+
T Consensus        79 v~~~Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~~~  120 (121)
T 2djj_A           79 IQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGKYKA  120 (121)
T ss_dssp             CSSSSEEEEECSSCTTSCCCCCCCSCHHHHHHHHHHTSSSCC
T ss_pred             cCcCCeEEEEeCcCCCCceEecCCCCHHHHHHHHHhccCcCC
Confidence            999999999987744  6788898 99999999999887654

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.63  E-value=1.7e-15  Score=135.34  Aligned_cols=104  Identities=18%  Similarity=0.417  Sum_probs=91.2

Q ss_pred             ceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCc---EEEEEEECCCchhHHHHHHhCCC
Q 018973          232 AVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGT---VVFARMNGDENDSCMQFLRDMNV  308 (348)
Q Consensus       232 ~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~---v~~~~vd~~~~~~~~~l~~~~~V  308 (348)
                      .+..+ +.++|++.+.    .+++++|+||++||++|+.+.|.|.+++++++++   +.++.+|++++.+   ++++|+|
T Consensus        16 ~v~~l-~~~~~~~~~~----~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~---l~~~~~v   87 (241)
T 3idv_A           16 GVLVL-NDANFDNFVA----DKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASV---LASRFDV   87 (241)
T ss_dssp             TEEEE-CTTTHHHHHT----TCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTCHH---HHHHTTC
T ss_pred             CcEEe-cccCHHHHHh----cCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCCHH---HHHhcCC
Confidence            34444 5578888876    4789999999999999999999999999998655   9999999999887   9999999


Q ss_pred             CccceEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhCC
Q 018973          309 VEVPTFLFIRDGQIRGRYVGS-GKGELIGEILRYQGV  344 (348)
Q Consensus       309 ~~~PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~~  344 (348)
                      .++||+++|++|+.+ ++.|. +.++|.+++.++...
T Consensus        88 ~~~Pt~~~~~~g~~~-~~~g~~~~~~l~~~i~~~~~~  123 (241)
T 3idv_A           88 SGYPTIKILKKGQAV-DYEGSRTQEEIVAKVREVSQP  123 (241)
T ss_dssp             CSSSEEEEEETTEEE-ECCSCSCHHHHHHHHHHHHST
T ss_pred             CcCCEEEEEcCCCcc-cccCcccHHHHHHHHhhccCc
Confidence            999999999999988 57888 999999999988654

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=99.63  E-value=1.8e-15  Score=140.57  Aligned_cols=107  Identities=21%  Similarity=0.341  Sum_probs=92.5

Q ss_pred             ceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECC--CchhHHHHHHhCCCC
Q 018973          232 AVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGD--ENDSCMQFLRDMNVV  309 (348)
Q Consensus       232 ~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~--~~~~~~~l~~~~~V~  309 (348)
                      .++.+ +.++|++.+.+   .+++++|+||++||++|+.+.|.|.++++.+.+.+.++.+|++  ++.+   ++++|+|.
T Consensus        18 ~vv~l-t~~~f~~~i~~---~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~d~~~~~~---l~~~~~I~   90 (298)
T 3ed3_A           18 HISEL-TPKSFDKAIHN---TNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKA---LCAKYDVN   90 (298)
T ss_dssp             TCEEC-CHHHHHHHHTS---SSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTSTTTHH---HHHHTTCC
T ss_pred             CeEEe-CHHHHHHHHHh---CCCeEEEEEECCCCHHHHHHHHHHHHHHHHccCCcEEEEEEccCccCHH---HHHhCCCC
Confidence            45555 66889998864   4789999999999999999999999999999878999999998  4444   99999999


Q ss_pred             ccceEEEEeCCe-----------------EEEEEeCC-ChHHHHHHHHHHhCCC
Q 018973          310 EVPTFLFIRDGQ-----------------IRGRYVGS-GKGELIGEILRYQGVR  345 (348)
Q Consensus       310 ~~PTl~~~~~G~-----------------~v~~~~G~-~~~~L~~~l~~~~~~~  345 (348)
                      ++||+++|++|+                 ....+.|. +.+.|.+++.+.++..
T Consensus        91 ~~Pt~~~~~~g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~~~~~  144 (298)
T 3ed3_A           91 GFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRIRSY  144 (298)
T ss_dssp             BSSEEEEEECCCC-------------CCCEEEECCSCCSHHHHHHHHHTTCCCC
T ss_pred             ccceEEEEECCceeecccccccccccccccceeecCCcCHHHHHHHHHHhcccc
Confidence            999999999987                 46788898 9999999999887643

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.63  E-value=1.7e-16  Score=128.89  Aligned_cols=106  Identities=21%  Similarity=0.347  Sum_probs=86.9

Q ss_pred             eeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhC--CcEEEEEEECCCchhHHHHHHhCCCCc
Q 018973          233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMA--GTVVFARMNGDENDSCMQFLRDMNVVE  310 (348)
Q Consensus       233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~--~~v~~~~vd~~~~~~~~~l~~~~~V~~  310 (348)
                      +..+ +.++|++.+..   .+++++|+||++||++|+.+.|.|.++++++.  +++.|+.+|+++++.   ++++|+|.+
T Consensus         9 v~~l-~~~~~~~~~~~---~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~~~---~~~~~~v~~   81 (133)
T 2dj3_A            9 VKVV-VGKTFDAIVMD---PKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDI---TNDQYKVEG   81 (133)
T ss_dssp             SEEC-CTTTCCCCCTC---TTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTSCC---CCSSCCCSS
T ss_pred             eEEE-cCCCHHHHhcc---CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcCHH---HHhhcCCCc
Confidence            4444 34666666543   37899999999999999999999999999996  469999999999887   888999999


Q ss_pred             cceEEEEeCCeEEE--EEe-CC-ChHHHHHHHHHHhCCC
Q 018973          311 VPTFLFIRDGQIRG--RYV-GS-GKGELIGEILRYQGVR  345 (348)
Q Consensus       311 ~PTl~~~~~G~~v~--~~~-G~-~~~~L~~~l~~~~~~~  345 (348)
                      +||+++|++|+.+.  ++. |. +.++|.++|+++++..
T Consensus        82 ~Pt~~~~~~g~~~~~~~~~gg~~~~~~l~~~l~~~~~~~  120 (133)
T 2dj3_A           82 FPTIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHATKR  120 (133)
T ss_dssp             SSEEEEECTTCTTSCEECCSSCCSTTHHHHHHHHHSSSC
T ss_pred             CCEEEEEeCCCcccceEecCCCcCHHHHHHHHHHhcccc
Confidence            99999998775432  456 65 8999999999987643

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=99.63  E-value=7.7e-16  Score=114.82  Aligned_cols=82  Identities=21%  Similarity=0.346  Sum_probs=75.4

Q ss_pred             cEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCC-ChH
Q 018973          254 KLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS-GKG  332 (348)
Q Consensus       254 k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~-~~~  332 (348)
                      .+.+++||++||++|+.+.|.++++++++++++.++.+|++++++   ++++|+|.++||+++  +|+.  ++.|. +.+
T Consensus         3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~---~~~~~~v~~~Pt~~~--~G~~--~~~G~~~~~   75 (85)
T 1fo5_A            3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQ---KAMEYGIMAVPTIVI--NGDV--EFIGAPTKE   75 (85)
T ss_dssp             CEEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCC---TTTSTTTCCSSEEEE--TTEE--ECCSSSSSH
T ss_pred             ceEEEEEeCCCCCchHHHHHHHHHHHHHcCCceEEEEEECCCCHH---HHHHCCCcccCEEEE--CCEE--eeecCCCHH
Confidence            578999999999999999999999999998789999999999887   899999999999988  9987  78898 999


Q ss_pred             HHHHHHHHHh
Q 018973          333 ELIGEILRYQ  342 (348)
Q Consensus       333 ~L~~~l~~~~  342 (348)
                      +|.++|++++
T Consensus        76 ~l~~~l~~~l   85 (85)
T 1fo5_A           76 ALVEAIKKRL   85 (85)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999998763

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=99.62  E-value=1.1e-15  Score=123.05  Aligned_cols=74  Identities=11%  Similarity=0.159  Sum_probs=67.9

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHc-CCcEEEEEe--CCCchhHHHHHHHcCcCCCCeEEEee-cccccccccc
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQC-NDVEFILVM--GDESEKTKELCEREKIKKVPHFSFYK-SMEKIHEEEG  213 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~-~~v~f~~vd--~d~~~~~~~l~~~~~V~~~Pt~~~~~-~g~~v~~~~G  213 (348)
                      ++++++|+||++||++|+.+.|.|+++++++ +++.|+.||  +|+   ..+++++|+|+++||+++|+ +|+.+.++.|
T Consensus        25 ~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~d~---~~~~~~~~~v~~~Pt~~~~~~~G~~~~~~~G  101 (126)
T 2l57_A           25 EGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEK---NIDLAYKYDANIVPTTVFLDKEGNKFYVHQG  101 (126)
T ss_dssp             SSSCEEEEEECSSCHHHHHHHHHHHHHHHHSSSSCEEEEEETTSSH---HHHHHHHTTCCSSSEEEEECTTCCEEEEEES
T ss_pred             CCCcEEEEEECCCCccHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc---hHHHHHHcCCcceeEEEEECCCCCEEEEecC
Confidence            6899999999999999999999999999999 569999999  777   66799999999999999998 8999888877


Q ss_pred             C
Q 018973          214 I  214 (348)
Q Consensus       214 ~  214 (348)
                      .
T Consensus       102 ~  102 (126)
T 2l57_A          102 L  102 (126)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=99.62  E-value=6.7e-16  Score=136.96  Aligned_cols=106  Identities=15%  Similarity=0.256  Sum_probs=91.9

Q ss_pred             ccceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCC
Q 018973          230 HSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVV  309 (348)
Q Consensus       230 ~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~  309 (348)
                      ...+..+.+.++|.+.+... ..+++++|+||++||++|+.+.|.|.+++..++ .+.|++||++ +++   ++++|+|.
T Consensus        98 ~g~v~~i~~~~~f~~~v~~~-~~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~-~v~f~~vd~~-~~~---l~~~~~i~  171 (217)
T 2trc_P           98 YGFVYELETGEQFLETIEKE-QKVTTIVVNIYEDGVRGCDALNSSLECLAAEYP-MVKFCKIRAS-NTG---AGDRFSSD  171 (217)
T ss_dssp             CCSEEECCSHHHHHHHHHHS-CTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT-TSEEEEEEHH-HHT---CSTTSCGG
T ss_pred             CCeEEEcCCHHHHHHHHHhc-CCCcEEEEEEECCCCccHHHHHHHHHHHHHHCC-CeEEEEEECC-cHH---HHHHCCCC
Confidence            34566777889999988753 135899999999999999999999999999995 6999999998 555   88999999


Q ss_pred             ccceEEEEeCCeEEEEEeCC-Ch-------HHHHHHHHHH
Q 018973          310 EVPTFLFIRDGQIRGRYVGS-GK-------GELIGEILRY  341 (348)
Q Consensus       310 ~~PTl~~~~~G~~v~~~~G~-~~-------~~L~~~l~~~  341 (348)
                      ++||+++|++|+++.++.|. +.       ++|..+|.++
T Consensus       172 ~~PTl~~~~~G~~v~~~~G~~~~~g~~~~~~~Le~~L~~~  211 (217)
T 2trc_P          172 VLPTLLVYKGGELISNFISVAEQFAEDFFAADVESFLNEY  211 (217)
T ss_dssp             GCSEEEEEETTEEEEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred             CCCEEEEEECCEEEEEEeCCcccCcccCCHHHHHHHHHHc
Confidence            99999999999999999998 54       8899998875

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=99.41  E-value=3.9e-17  Score=126.54  Aligned_cols=97  Identities=28%  Similarity=0.511  Sum_probs=85.3

Q ss_pred             hhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEe
Q 018973          239 KEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIR  318 (348)
Q Consensus       239 ~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~  318 (348)
                      .+++.+.+..   .+++++|+||++||++|+.+.|.+.++++++++++.|+.+|++++++   ++++|+|.++||+++++
T Consensus         8 ~~~~~~~~~~---~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~v~~~Pt~~~~~   81 (106)
T 2yj7_A            8 DENFEQEVLK---SDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPN---TAAQYGIRSIPTLLLFK   81 (106)
Confidence            3555554433   47899999999999999999999999999997779999999998887   99999999999999999


Q ss_pred             CCeEEEEEeCC-ChHHHHHHHHHH
Q 018973          319 DGQIRGRYVGS-GKGELIGEILRY  341 (348)
Q Consensus       319 ~G~~v~~~~G~-~~~~L~~~l~~~  341 (348)
                      +|+.+.++.|. +.++|.++|+++
T Consensus        82 ~g~~~~~~~g~~~~~~l~~~l~~~  105 (106)
T 2yj7_A           82 NGQVVDRLVGAQPKEALKERIDKH  105 (106)
Confidence            99999999999 889999998765

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=99.61  E-value=7.7e-16  Score=114.84  Aligned_cols=81  Identities=15%  Similarity=0.263  Sum_probs=74.6

Q ss_pred             EEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCC-ChHH
Q 018973          255 LIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS-GKGE  333 (348)
Q Consensus       255 ~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~-~~~~  333 (348)
                      ..+++||++||++|+.+.|.++++++++++++.++.+|++++++   ++++|+|.++||+++  +|+.  ++.|. +.++
T Consensus         3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~---~~~~~~v~~~Pt~~~--~G~~--~~~G~~~~~~   75 (85)
T 1nho_A            3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDRE---KAIEYGLMAVPAIAI--NGVV--RFVGAPSREE   75 (85)
T ss_dssp             CCEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGG---GGGGTCSSCSSEEEE--TTTE--EEECSSCCHH
T ss_pred             EEEEEEECCCCcchHHHHHHHHHHHHHhcCCeEEEEEECCCCHH---HHHhCCceeeCEEEE--CCEE--EEccCCCHHH
Confidence            35899999999999999999999999998789999999999887   999999999999988  8987  78898 9999


Q ss_pred             HHHHHHHHh
Q 018973          334 LIGEILRYQ  342 (348)
Q Consensus       334 L~~~l~~~~  342 (348)
                      |.++|++++
T Consensus        76 l~~~l~~~l   84 (85)
T 1nho_A           76 LFEAINDEM   84 (85)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHh
Confidence            999998875

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=99.61  E-value=2.5e-14  Score=128.47  Aligned_cols=163  Identities=13%  Similarity=0.090  Sum_probs=106.0

Q ss_pred             CCCEEEEEEe-CCCCHHHH-hhhhHHHHHHHHcC--Cc-EEEEEeCCCchhHHHHHHHcCcCCCC---------------
Q 018973          138 KNKLVVVEFA-ASRSLDSS-KIYPFMVDLSRQCN--DV-EFILVMGDESEKTKELCEREKIKKVP---------------  197 (348)
Q Consensus       138 ~~k~vvV~F~-a~wC~~C~-~~~p~l~~la~~~~--~v-~f~~vd~d~~~~~~~l~~~~~V~~~P---------------  197 (348)
                      ++++|||.|| ++||++|+ ...|.|.++++++.  ++ .++.|+.|..+..++.++++++..+|               
T Consensus        32 ~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv  111 (241)
T 1nm3_A           32 DNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVNDTFVMNAWKEDEKSENISFIPDGNGEFTEGMGM  111 (241)
T ss_dssp             TTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTSEEEECTTSHHHHHTTC
T ss_pred             CCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEcCCHHHHHHHHHhcCCCceEEEECCCcHHHHHhCc
Confidence            5789999999 99999999 99999999998874  59 99999998755455566666654444               


Q ss_pred             ---------------e-EEEeeccccccccccCCCCcccccccccCCCccceeecCChhhHHHHhhhcccCCcEEEEEEe
Q 018973          198 ---------------H-FSFYKSMEKIHEEEGIGPDQLMGDVLYYGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVG  261 (348)
Q Consensus       198 ---------------t-~~~~~~g~~v~~~~G~~~~~l~~~v~~~~~~~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~  261 (348)
                                     + +++ ++|+.+..+.|.....             .-....+.+++-+.+.... -....++.|+
T Consensus       112 ~~~~~~~g~~~~~~p~t~li-~~G~i~~~~~~~~~~~-------------~~~~~~~~~~il~~l~~~~-i~~~~i~ly~  176 (241)
T 1nm3_A          112 LVGKEDLGFGKRSWRYSMLV-KNGVVEKMFIEPNEPG-------------DPFKVSDADTMLKYLAPQH-QVQESISIFT  176 (241)
T ss_dssp             EEECTTTTCCEEECCEEEEE-ETTEEEEEEECCSCSS-------------CCCSSSSHHHHHHHHCTTS-CCCCCEEEEE
T ss_pred             eeecccccCcccceeEEEEE-ECCEEEEEEEeccCCC-------------ccceecCHHHHHHHhhhhc-cccceEEEEE
Confidence                           2 222 3333333222211000             0001123344444444321 1344567788


Q ss_pred             CCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEE
Q 018973          262 LKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIR  323 (348)
Q Consensus       262 a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v  323 (348)
                      .+||+.|++....|.+.      .+.|-.+|+++.+...++.+.++..++|++++  +|+.+
T Consensus       177 ~~~Cp~C~~a~~~L~~~------~i~~~~~~i~~~~~~~~l~~~~g~~~vP~~~~--~g~~i  230 (241)
T 1nm3_A          177 KPGCPFCAKAKQLLHDK------GLSFEEIILGHDATIVSVRAVSGRTTVPQVFI--GGKHI  230 (241)
T ss_dssp             CSSCHHHHHHHHHHHHH------TCCCEEEETTTTCCHHHHHHHTCCSSSCEEEE--TTEEE
T ss_pred             CCCChHHHHHHHHHHHc------CCceEEEECCCchHHHHHHHHhCCCCcCEEEE--CCEEE
Confidence            99999999998777653      25566778876654466888899999999854  77654

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=99.61  E-value=4e-16  Score=132.77  Aligned_cols=105  Identities=15%  Similarity=0.166  Sum_probs=82.0

Q ss_pred             ChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHH---HHHHHHhCCcEEEEEEECCCchhH---------------
Q 018973          238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTV---IKLSRQMAGTVVFARMNGDENDSC---------------  299 (348)
Q Consensus       238 s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~~~~~~~---------------  299 (348)
                      +..++++.+..+...+++++|+||++||++|+.+.+.+   .++.+.+.+++.++.||+++.++.               
T Consensus        32 ~~~~~~~~~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~  111 (172)
T 3f9u_A           32 KFDDYDLGMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDNKTPLTEPVKIMENGTERTL  111 (172)
T ss_dssp             CBSCHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEETTCCCEEEEEEEEEETTEEEEE
T ss_pred             chhhHHHHHHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCCEEEEEEecCcccccchhhhhhhcchhhhh
Confidence            45567777765545689999999999999999984433   555555544699999999876541               


Q ss_pred             -------HHH-HHhCCCCccceEEEE-eCCeEEEEEeCC-C-hHHHHHHHHHHh
Q 018973          300 -------MQF-LRDMNVVEVPTFLFI-RDGQIRGRYVGS-G-KGELIGEILRYQ  342 (348)
Q Consensus       300 -------~~l-~~~~~V~~~PTl~~~-~~G~~v~~~~G~-~-~~~L~~~l~~~~  342 (348)
                             ..+ +++|+|.++||++++ ++|+++.++.|. + .++|.++|++.+
T Consensus       112 ~~~~~~~~~~~~~~~~v~~~Pt~~lid~~G~~~~~~~G~~~~~~~l~~~l~~~l  165 (172)
T 3f9u_A          112 RTVGDKWSYLQRVKFGANAQPFYVLIDNEGNPLNKSYAYDEDISKYINFLQTGL  165 (172)
T ss_dssp             EEHHHHHHHHHHHHHSCCCSSEEEEECTTSCBSSCCBCSCCCHHHHHHHHHHHH
T ss_pred             hhhhhhhhHHHHHHcCCCCcceEEEECCCCCEEeeccCCCCCHHHHHHHHHHHH
Confidence                   001 789999999999888 899999999999 6 999999988764

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=99.60  E-value=1.5e-15  Score=136.91  Aligned_cols=106  Identities=17%  Similarity=0.267  Sum_probs=90.7

Q ss_pred             ccceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCC
Q 018973          230 HSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVV  309 (348)
Q Consensus       230 ~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~  309 (348)
                      ...+..+.+.++|.+.+... ..+++|||+||++||++|+.+.|.|.+++.++++ +.|++||+++ ..   ++++|+|.
T Consensus       111 ~G~V~ei~s~~~f~~~v~~~-~~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~~-v~f~kVd~d~-~~---l~~~~~I~  184 (245)
T 1a0r_P          111 YGFVYELESGEQFLETIEKE-QKITTIVVHIYEDGIKGCDALNSSLICLAAEYPM-VKFCKIKASN-TG---AGDRFSSD  184 (245)
T ss_dssp             CCSEEECCSHHHHHHHHHSS-CTTCEEEEEEECTTSTTHHHHHHHHHHHHHHCTT-SEEEEEEHHH-HC---CTTSSCTT
T ss_pred             CCeEEEeCCHHHHHHHHHHh-cCCCEEEEEEECCCChHHHHHHHHHHHHHHHCCC-CEEEEEeCCc-HH---HHHHCCCC
Confidence            45577777889999988642 1478999999999999999999999999999965 9999999976 44   88899999


Q ss_pred             ccceEEEEeCCeEEEEEeCC-C-------hHHHHHHHHHH
Q 018973          310 EVPTFLFIRDGQIRGRYVGS-G-------KGELIGEILRY  341 (348)
Q Consensus       310 ~~PTl~~~~~G~~v~~~~G~-~-------~~~L~~~l~~~  341 (348)
                      ++||+++|++|+++.++.|. +       .+.|..+|.++
T Consensus       185 ~~PTll~~~~G~~v~~~vG~~~~~g~~~~~e~Le~~L~~~  224 (245)
T 1a0r_P          185 VLPTLLVYKGGELLSNFISVTEQLAEEFFTGDVESFLNEY  224 (245)
T ss_dssp             TCSEEEEEETTEEEEEETTGGGGSCTTCCHHHHHHHHHTT
T ss_pred             CCCEEEEEECCEEEEEEeCCcccccccccHHHHHHHHHHc
Confidence            99999999999999999986 2       34688888776

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=99.60  E-value=9.4e-16  Score=121.98  Aligned_cols=89  Identities=16%  Similarity=0.145  Sum_probs=70.1

Q ss_pred             CcEEEEEEeCCCChhhhhhhhHHHHHHHHh--CCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCC-
Q 018973          253 QKLIVLDVGLKHCGPCVKVYPTVIKLSRQM--AGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS-  329 (348)
Q Consensus       253 ~k~vvV~F~a~wC~~C~~~~p~l~~la~~~--~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~-  329 (348)
                      .+.++|+||++||++|+.+.+.+....+..  ...+.++++|++++.. .+++.+++|.++|||++|++|+++.|+.|+ 
T Consensus        18 ~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~~~~~-~~la~~~~V~g~PT~i~f~~G~ev~Ri~G~~   96 (116)
T 3dml_A           18 AELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLP-PGLELARPVTFTPTFVLMAGDVESGRLEGYP   96 (116)
T ss_dssp             -CEEEEEEECTTCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETTSCCC-TTCBCSSCCCSSSEEEEEETTEEEEEEECCC
T ss_pred             CCCEEEEEECCCCHHHHHHHHHHHhhHHHhhhcccceEEEEECCCCCc-hhHHHHCCCCCCCEEEEEECCEEEeeecCCC
Confidence            578999999999999999976443221110  0126788999987631 128889999999999999999999999999 


Q ss_pred             ChHHHHHHHHHHh
Q 018973          330 GKGELIGEILRYQ  342 (348)
Q Consensus       330 ~~~~L~~~l~~~~  342 (348)
                      +++.|..+|++.+
T Consensus        97 ~~~~f~~~L~~~l  109 (116)
T 3dml_A           97 GEDFFWPMLARLI  109 (116)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            9999999998765

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=99.59  E-value=4.8e-15  Score=124.14  Aligned_cols=103  Identities=16%  Similarity=0.266  Sum_probs=83.9

Q ss_pred             hHHHHhhhcccCCcEEEEEEe-CCCChhhhhhhhHH---HHHHHHhCCcEEEEEEECCCch--------hHHHHHHhCCC
Q 018973          241 DVEKLIDDHKVDQKLIVLDVG-LKHCGPCVKVYPTV---IKLSRQMAGTVVFARMNGDEND--------SCMQFLRDMNV  308 (348)
Q Consensus       241 ~~~~~l~~~~~~~k~vvV~F~-a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~~~~~--------~~~~l~~~~~V  308 (348)
                      ++++.+......+++++|+|| ++||++|+.+.|.+   .++.+.+..++.++.+|.++.+        ...+++++|+|
T Consensus        35 ~~~~~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~v  114 (154)
T 2ju5_A           35 SYAEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKAQYKV  114 (154)
T ss_dssp             CHHHHHHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEECCSSCCCCHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCcEEEEEecCccccCCChhhHhhHHHHHHHcCC
Confidence            345555443335899999999 99999999999999   7777666556999999998763        33459999999


Q ss_pred             CccceEEEE-eCCeEEEEEeCC---ChHHHHHHHHHHhCC
Q 018973          309 VEVPTFLFI-RDGQIRGRYVGS---GKGELIGEILRYQGV  344 (348)
Q Consensus       309 ~~~PTl~~~-~~G~~v~~~~G~---~~~~L~~~l~~~~~~  344 (348)
                      .++||++++ ++|+++.++ |.   +.++|.++|+++++.
T Consensus       115 ~~~Pt~~~~d~~G~~~~~~-G~~~~~~~~l~~~l~~~l~~  153 (154)
T 2ju5_A          115 TGFPELVFIDAEGKQLARM-GFEPGGGAAYVSKVKSALKL  153 (154)
T ss_dssp             CSSSEEEEECTTCCEEEEE-CCCTTCHHHHHHHHHHHHTC
T ss_pred             CCCCEEEEEcCCCCEEEEe-cCCCCCHHHHHHHHHHHHhc
Confidence            999999888 799999999 87   488899999988764

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=99.59  E-value=6.4e-16  Score=123.28  Aligned_cols=89  Identities=19%  Similarity=0.232  Sum_probs=73.5

Q ss_pred             CCCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC------CcEEEEEeCCCchhHHHHHHH
Q 018973          117 RDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN------DVEFILVMGDESEKTKELCER  190 (348)
Q Consensus       117 ~~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~------~v~f~~vd~d~~~~~~~l~~~  190 (348)
                      ..+.+.++ +.++|++.+.. ++++++|+|||+||++|+.+.|.|++++++++      ++.|+.||+++.+    +++ 
T Consensus         5 ~~~~v~~l-~~~~f~~~v~~-~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~----~~~-   77 (121)
T 2djj_A            5 SEGPVTVV-VAKNYNEIVLD-DTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND----VPD-   77 (121)
T ss_dssp             CSCSSEEC-CTTTTTTSSSC-TTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC----CSS-
T ss_pred             CCCCeEEe-cccCHHHHhhc-CCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcccc----ccc-
Confidence            34567777 77888887632 68999999999999999999999999999986      4999999999854    454 


Q ss_pred             cCcCCCCeEEEeecccc--cccccc
Q 018973          191 EKIKKVPHFSFYKSMEK--IHEEEG  213 (348)
Q Consensus       191 ~~V~~~Pt~~~~~~g~~--v~~~~G  213 (348)
                       +|+++||+++|++|..  +.++.|
T Consensus        78 -~v~~~Pt~~~~~~~~~~~~~~~~G  101 (121)
T 2djj_A           78 -EIQGFPTIKLYPAGAKGQPVTYSG  101 (121)
T ss_dssp             -CCSSSSEEEEECSSCTTSCCCCCC
T ss_pred             -ccCcCCeEEEEeCcCCCCceEecC
Confidence             9999999999988755  555555

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=99.38  E-value=9.5e-17  Score=124.34  Aligned_cols=90  Identities=22%  Similarity=0.343  Sum_probs=77.5

Q ss_pred             ceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC-CcEEEEEeCCCchhHHHHHHHcCcCCCCeE
Q 018973          121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN-DVEFILVMGDESEKTKELCEREKIKKVPHF  199 (348)
Q Consensus       121 v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~-~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~  199 (348)
                      +.++ +.++|++.+.+ .+++++|.||++||++|+.+.|.+++++++++ ++.|+.+|+++   ..+++++|+|+++||+
T Consensus         3 v~~l-~~~~~~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~v~~~Pt~   77 (106)
T 2yj7_A            3 VIEV-TDENFEQEVLK-SDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDE---NPNTAAQYGIRSIPTL   77 (106)
Confidence            3445 66777766532 68999999999999999999999999999998 49999999998   5569999999999999


Q ss_pred             EEeeccccccccccCC
Q 018973          200 SFYKSMEKIHEEEGIG  215 (348)
Q Consensus       200 ~~~~~g~~v~~~~G~~  215 (348)
                      ++|++|+.+.++.|..
T Consensus        78 ~~~~~g~~~~~~~g~~   93 (106)
T 2yj7_A           78 LLFKNGQVVDRLVGAQ   93 (106)
Confidence            9999999998888744

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=99.59  E-value=1.5e-15  Score=148.10  Aligned_cols=94  Identities=19%  Similarity=0.215  Sum_probs=80.1

Q ss_pred             CCCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC---------CcEEEEEeCCCchhHHHH
Q 018973          117 RDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN---------DVEFILVMGDESEKTKEL  187 (348)
Q Consensus       117 ~~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~---------~v~f~~vd~d~~~~~~~l  187 (348)
                      ..+.+.++ +.++|++.+.+..+++|||+|||+||+||+.+.|.|+++++++.         ++.|++||+|+   ..++
T Consensus        21 ~~~~V~~L-t~~~F~~~l~~~~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~---~~~l   96 (470)
T 3qcp_A           21 LDSSVVDL-SGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCAS---EVDL   96 (470)
T ss_dssp             TCTTEEEC-SCSCGGGTCTTGGGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTT---CHHH
T ss_pred             CCCCcEEC-CHHHHHHHHHhCCCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCC---CHHH
Confidence            34567777 77899988875556899999999999999999999999999986         39999999999   5569


Q ss_pred             HHHcCcCCCCeEEEeeccc--cccccccC
Q 018973          188 CEREKIKKVPHFSFYKSME--KIHEEEGI  214 (348)
Q Consensus       188 ~~~~~V~~~Pt~~~~~~g~--~v~~~~G~  214 (348)
                      +++|+|+++||+++|++|+  ...++.|.
T Consensus        97 a~~y~V~~~PTlilf~~gg~~~~~~y~G~  125 (470)
T 3qcp_A           97 CRKYDINFVPRLFFFYPRDSCRSNEECGT  125 (470)
T ss_dssp             HHHTTCCSSCEEEEEEESSCCCTTSCCCC
T ss_pred             HHHcCCCccCeEEEEECCCceEEEEeeCC
Confidence            9999999999999997554  46667774

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=99.59  E-value=3.2e-15  Score=122.14  Aligned_cols=105  Identities=7%  Similarity=0.076  Sum_probs=89.9

Q ss_pred             eeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCc--
Q 018973          233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVE--  310 (348)
Q Consensus       233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~--  310 (348)
                      ++..-+.+++++.+.    .+.+++|+||++ |++|+.+.|.++++++++++++.|+++|++++++   ++++|||.+  
T Consensus         7 lv~~~t~~~f~~~~~----~~~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~gk~~f~~vd~d~~~~---~a~~~gi~~~~   78 (133)
T 2djk_A            7 LIGEIGPETYSDYMS----AGIPLAYIFAET-AEERKELSDKLKPIAEAQRGVINFGTIDAKAFGA---HAGNLNLKTDK   78 (133)
T ss_dssp             CSEECCHHHHHHHHH----TTSCEEEEECSC-SSSHHHHHHHHHHHHHSSTTTSEEEEECTTTTGG---GTTTTTCCSSS
T ss_pred             ceeccChHHHHHHhc----CCCCEEEEEecC-hhhHHHHHHHHHHHHHHhCCeEEEEEEchHHhHH---HHHHcCCCccc
Confidence            333346688887764    468999999999 8999999999999999999899999999999988   999999999  


Q ss_pred             cceEEEEeC--CeEEEEEe--CC-ChHHHHHHHHHHhCCCC
Q 018973          311 VPTFLFIRD--GQIRGRYV--GS-GKGELIGEILRYQGVRV  346 (348)
Q Consensus       311 ~PTl~~~~~--G~~v~~~~--G~-~~~~L~~~l~~~~~~~~  346 (348)
                      +||+++|++  |+. .++.  |. +.+.|.++|++++.-++
T Consensus        79 iPtl~i~~~~~g~~-~~~~~~g~~~~~~l~~fi~~~l~Gkl  118 (133)
T 2djk_A           79 FPAFAIQEVAKNQK-FPFDQEKEITFEAIKAFVDDFVAGKI  118 (133)
T ss_dssp             SSEEEEECTTTCCB-CCCCSSSCCCHHHHHHHHHHHHHTCC
T ss_pred             CCEEEEEecCcCcc-cCCCCccccCHHHHHHHHHHHHcCCc
Confidence            999999987  776 4665  88 99999999999875444

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=99.58  E-value=7.8e-15  Score=145.69  Aligned_cols=106  Identities=17%  Similarity=0.405  Sum_probs=95.0

Q ss_pred             ceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCc-EEEEEEECCCchhHHHHHHhCCCCc
Q 018973          232 AVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGT-VVFARMNGDENDSCMQFLRDMNVVE  310 (348)
Q Consensus       232 ~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~~~~~~~~~l~~~~~V~~  310 (348)
                      .+..+ +.++|++.+.    .+++++|+||++||++|+.+.|.|.++++.+++. +.|+.||++++.+   ++++|+|.+
T Consensus        15 ~v~~l-~~~~f~~~~~----~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~v~~~~vd~~~~~~---l~~~~~v~~   86 (504)
T 2b5e_A           15 AVVKL-ATDSFNEYIQ----SHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQD---LCMEHNIPG   86 (504)
T ss_dssp             SCEEC-CTTTHHHHHT----TCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHH---HHHHTTCCS
T ss_pred             CcEEC-CHHHHHHHHh----cCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccCCeEEEEEECCCCHH---HHHhcCCCc
Confidence            45555 5688998876    4789999999999999999999999999999874 9999999999887   999999999


Q ss_pred             cceEEEEeCCeE--EEEEeCC-ChHHHHHHHHHHhCCC
Q 018973          311 VPTFLFIRDGQI--RGRYVGS-GKGELIGEILRYQGVR  345 (348)
Q Consensus       311 ~PTl~~~~~G~~--v~~~~G~-~~~~L~~~l~~~~~~~  345 (348)
                      +||+++|++|+.  +.++.|. +.+.|.++|.+.++..
T Consensus        87 ~Pt~~~~~~g~~~~~~~~~G~~~~~~l~~~l~~~~~~~  124 (504)
T 2b5e_A           87 FPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQPA  124 (504)
T ss_dssp             SSEEEEEETTCTTCEEECCSCCSHHHHHHHHHHHTSCS
T ss_pred             CCEEEEEeCCccccceeecCCCCHHHHHHHHHHhcCCc
Confidence            999999999997  8899998 9999999999988654

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=99.36  E-value=1.5e-16  Score=128.85  Aligned_cols=93  Identities=24%  Similarity=0.413  Sum_probs=80.0

Q ss_pred             cCCcEEEEEEeCCCChhhhhhhhHH---HHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEE--eCCeE--E
Q 018973          251 VDQKLIVLDVGLKHCGPCVKVYPTV---IKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFI--RDGQI--R  323 (348)
Q Consensus       251 ~~~k~vvV~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~--~~G~~--v  323 (348)
                      ..+++++|+||++||++|+.+.|.+   .++++.+++++.++.+|++..+ ..+++++|+|.++||+++|  ++|++  +
T Consensus        17 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~~~v~~~Pt~~~~d~~~G~~~~~   95 (130)
T 2lst_A           17 AHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPE-GQELARRYRVPGTPTFVFLVPKAGAWEEV   95 (130)
Confidence            3578999999999999999999999   8999888777999999995322 1239999999999999999  67998  8


Q ss_pred             EEEeCC-ChHHHHHHHHHHhCC
Q 018973          324 GRYVGS-GKGELIGEILRYQGV  344 (348)
Q Consensus       324 ~~~~G~-~~~~L~~~l~~~~~~  344 (348)
                      .++.|. +.++|.++|+++++.
T Consensus        96 ~~~~G~~~~~~l~~~l~~~~~~  117 (130)
T 2lst_A           96 GRLFGSRPRAEFLKELRQVCVK  117 (130)
Confidence            899998 889999999987653

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=99.57  E-value=9.4e-15  Score=131.51  Aligned_cols=105  Identities=17%  Similarity=0.292  Sum_probs=86.7

Q ss_pred             ceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC---cEEEEEEEC--CCchhHHHHHHhC
Q 018973          232 AVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG---TVVFARMNG--DENDSCMQFLRDM  306 (348)
Q Consensus       232 ~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~---~v~~~~vd~--~~~~~~~~l~~~~  306 (348)
                      .+..+ +.+++++.+..   .+++++|+||++||++|+.+.|.++++++++++   .+.|+.||+  +++.+   ++++|
T Consensus        13 ~v~~l-~~~~f~~~i~~---~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~~---l~~~~   85 (244)
T 3q6o_A           13 PLTLL-QADTVRGAVLG---SRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSA---VCRDF   85 (244)
T ss_dssp             SSEEE-CTTTHHHHHSS---CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTTHH---HHHHT
T ss_pred             CceeC-ChhhHHHHHhh---CCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhhHH---HHHHc
Confidence            44444 45778877764   369999999999999999999999999999976   799999999  45555   99999


Q ss_pred             CCCccceEEEEeCC------eEEEEEeCCChHHHHHHHHHHhCC
Q 018973          307 NVVEVPTFLFIRDG------QIRGRYVGSGKGELIGEILRYQGV  344 (348)
Q Consensus       307 ~V~~~PTl~~~~~G------~~v~~~~G~~~~~L~~~l~~~~~~  344 (348)
                      +|.++||+++|++|      ..+ ++.|.+.+.|.++|.+++..
T Consensus        86 ~v~~~Pt~~~~~~g~~~~~g~~~-~~~g~~~~~l~~~i~~~l~~  128 (244)
T 3q6o_A           86 NIPGFPTVRFFXAFTXNGSGAVF-PVAGADVQTLRERLIDALES  128 (244)
T ss_dssp             TCCSSSEEEEECTTCCSSSCEEC-CCTTCCHHHHHHHHHHHHHT
T ss_pred             CCCccCEEEEEeCCCcCCCCeeE-ecCCCCHHHHHHHHHHHHHh
Confidence            99999999999874      333 55666899999999988643

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=99.57  E-value=4.2e-15  Score=134.08  Aligned_cols=144  Identities=13%  Similarity=0.084  Sum_probs=103.6

Q ss_pred             CCCceEecCHHHHHHHHHhcCCCEEEEEEe--CCCCHHHHhhhhHHHHHHHHc----CCcEEEEEeCCCc--hhHHHHHH
Q 018973          118 DERVKKVHSIEEFDEALRLAKNKLVVVEFA--ASRSLDSSKIYPFMVDLSRQC----NDVEFILVMGDES--EKTKELCE  189 (348)
Q Consensus       118 ~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~--a~wC~~C~~~~p~l~~la~~~----~~v~f~~vd~d~~--~~~~~l~~  189 (348)
                      ...++.+ +.++|++++.  .+++|||+||  ||||+    +.|.|+++++++    +++.|++||||+.  ++.+++|+
T Consensus        15 ~~~v~~L-t~~nF~~vi~--~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~   87 (248)
T 2c0g_A           15 CTGCVDL-DELSFEKTVE--RFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGD   87 (248)
T ss_dssp             CTTCEEC-CTTTHHHHHT--TSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHH
T ss_pred             CCCcEEC-CHHHHHHHHh--cCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCcccccccHHHHH
Confidence            3456665 8899999775  6889999999  99999    999999999987    3599999999872  22456999


Q ss_pred             HcCcC--CCCeEEEeecccc--cccc--cc-CCCCcccccccccCCCccceeecCChhhHHHHhhhcccCCcEEEEEEeC
Q 018973          190 REKIK--KVPHFSFYKSMEK--IHEE--EG-IGPDQLMGDVLYYGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGL  262 (348)
Q Consensus       190 ~~~V~--~~Pt~~~~~~g~~--v~~~--~G-~~~~~l~~~v~~~~~~~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a  262 (348)
                      +|+|+  ++|||++|+ |+.  ..++  .| ...+.|...+........  -.....+.++.++.           .|.+
T Consensus        88 ~~~V~~~~~PTl~~F~-G~~~~~~~y~~~G~~~~~~L~~fi~~~~~~~~--~~~g~i~~~d~l~~-----------~f~~  153 (248)
T 2c0g_A           88 RYKVDDKNFPSIFLFK-GNADEYVQLPSHVDVTLDNLKAFVSANTPLYI--GRDGCIKEFNEVLK-----------NYAN  153 (248)
T ss_dssp             HTTCCTTSCCEEEEES-SSSSSEEECCTTSCCCHHHHHHHHHHHSSCCC--CCTTCCHHHHHHHT-----------TGGG
T ss_pred             HhCCCcCCCCeEEEEe-CCcCcceeecccCCCCHHHHHHHHHHhhcccc--CCCCchHHHHHHHH-----------HHhc
Confidence            99999  999999999 873  4455  55 444555544432211111  11223355665554           3677


Q ss_pred             CCChhhhhhhhHHHHHHHHh
Q 018973          263 KHCGPCVKVYPTVIKLSRQM  282 (348)
Q Consensus       263 ~wC~~C~~~~p~l~~la~~~  282 (348)
                      .||..|..+...+++++..+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~l  173 (248)
T 2c0g_A          154 IPDAEQLKLIEKLQAKQEQL  173 (248)
T ss_dssp             SCHHHHHHHHHHHHHHHHHC
T ss_pred             ccchhHHHHHHHHHHHHHHc
Confidence            88999988888888776665

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=99.56  E-value=1.5e-14  Score=137.22  Aligned_cols=103  Identities=9%  Similarity=0.159  Sum_probs=90.0

Q ss_pred             eeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhH-------HHHHHHHhCC-cEEEEEEECCCchhHHHHHH
Q 018973          233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPT-------VIKLSRQMAG-TVVFARMNGDENDSCMQFLR  304 (348)
Q Consensus       233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~-------l~~la~~~~~-~v~~~~vd~~~~~~~~~l~~  304 (348)
                      +..+ +.++|++.+..    +++++|+|||+||+ |+.+.|.       ++++++.+.+ ++.+++||++++.+   +++
T Consensus        13 v~~l-~~~~f~~~i~~----~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~~~~~---l~~   83 (350)
T 1sji_A           13 VVSL-TEKNFKQVLKK----YDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKKEAK---LAK   83 (350)
T ss_dssp             CEEE-CHHHHHHHHTT----CSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETTTTHH---HHH
T ss_pred             cEEC-CHHHHHHHHhh----CCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhcCcEEEEEeCCCCHH---HHH
Confidence            4444 56889988863    68999999999999 9999888       8999998865 49999999999887   999


Q ss_pred             hCCCCccceEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhCCC
Q 018973          305 DMNVVEVPTFLFIRDGQIRGRYVGS-GKGELIGEILRYQGVR  345 (348)
Q Consensus       305 ~~~V~~~PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~~~  345 (348)
                      +|+|.++||+++|++|+ +.++.|. +.+.|.+++.++++..
T Consensus        84 ~~~v~~~Pt~~~~~~g~-~~~~~G~~~~~~l~~~i~~~~~~~  124 (350)
T 1sji_A           84 KLGFDEEGSLYVLKGDR-TIEFDGEFAADVLVEFLLDLIEDP  124 (350)
T ss_dssp             HHTCCSTTEEEEEETTE-EEEECSCCCHHHHHHHHHTTSSCS
T ss_pred             hcCCCccceEEEEECCc-EEEecCCCCHHHHHHHHHHhcCCc
Confidence            99999999999999999 5688898 9999999999887653

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=99.55  E-value=2.9e-14  Score=136.25  Aligned_cols=105  Identities=9%  Similarity=0.162  Sum_probs=89.3

Q ss_pred             ceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhh------hHHHHHHHHhCC-cEEEEEEECCCchhHHHHHH
Q 018973          232 AVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVY------PTVIKLSRQMAG-TVVFARMNGDENDSCMQFLR  304 (348)
Q Consensus       232 ~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~------p~l~~la~~~~~-~v~~~~vd~~~~~~~~~l~~  304 (348)
                      .+..+ +.++|++.+..    +++++|+|||+||++|+...      |.++++++.+.+ .+.|++||++++++   +|+
T Consensus        14 ~v~~l-t~~~f~~~i~~----~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~~~~---l~~   85 (367)
T 3us3_A           14 RVINV-NAKNYKNVFKK----YEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAA---VAK   85 (367)
T ss_dssp             CCEEC-CTTTHHHHHHH----CSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTTTHH---HHH
T ss_pred             ccEEC-CHHHHHHHHhh----CCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCcccHH---HHH
Confidence            34444 56789998864    68999999999999974433      688999998865 49999999999887   999


Q ss_pred             hCCCCccceEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhCCC
Q 018973          305 DMNVVEVPTFLFIRDGQIRGRYVGS-GKGELIGEILRYQGVR  345 (348)
Q Consensus       305 ~~~V~~~PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~~~  345 (348)
                      +|+|+++||+++|++|+.+ .+.|. +.+.|.++|.++.+..
T Consensus        86 ~~~V~~~PTl~~f~~G~~~-~y~G~~~~~~i~~~i~~~~~~~  126 (367)
T 3us3_A           86 KLGLTEEDSIYVFKEDEVI-EYDGEFSADTLVEFLLDVLEDP  126 (367)
T ss_dssp             HHTCCSTTEEEEEETTEEE-ECCSCCSHHHHHHHHHHHHSCS
T ss_pred             HcCCCcCceEEEEECCcEE-EeCCCCCHHHHHHHHHHhcCCC
Confidence            9999999999999999875 78888 9999999999987754

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=99.54  E-value=1.6e-15  Score=126.84  Aligned_cols=88  Identities=16%  Similarity=0.151  Sum_probs=65.0

Q ss_pred             HHHHHHHHhc--CCCEEEEEEeCCCCHHHHhhhhHHHHHHH--HcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEee
Q 018973          128 EEFDEALRLA--KNKLVVVEFAASRSLDSSKIYPFMVDLSR--QCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYK  203 (348)
Q Consensus       128 ~~f~~~l~~~--~~k~vvV~F~a~wC~~C~~~~p~l~~la~--~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~  203 (348)
                      .+|++.++.+  .+++|+|+|||+||++|+.+.|.+.+..+  ++.+..|+.|++|+.  ..+++.+|+|.++||++||+
T Consensus        31 ~~~~~al~~A~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~~~fv~V~vD~e--~~~~~~~~~v~~~PT~~f~~  108 (151)
T 3ph9_A           31 QTYEEGLFYAQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHE--TTDKNLSPDGQYVPRIMFVD  108 (151)
T ss_dssp             SSHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHHHTCEEEEESSC--CSCGGGCTTCCCSSEEEEEC
T ss_pred             hCHHHHHHHHHHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhhcCeEEEEecCC--chhhHhhcCCCCCCEEEEEC
Confidence            3444444332  48999999999999999999999987532  232345666666532  12367899999999999998


Q ss_pred             -ccccccccccCCCC
Q 018973          204 -SMEKIHEEEGIGPD  217 (348)
Q Consensus       204 -~g~~v~~~~G~~~~  217 (348)
                       +|+.+.++.|...+
T Consensus       109 ~~G~~v~~~~G~~~~  123 (151)
T 3ph9_A          109 PSLTVRADIAGRYSN  123 (151)
T ss_dssp             TTSCBCTTCCCSCTT
T ss_pred             CCCCEEEEEeCCcCC
Confidence             99999999996443

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=99.54  E-value=5.4e-15  Score=119.46  Aligned_cols=88  Identities=19%  Similarity=0.188  Sum_probs=71.4

Q ss_pred             CHHHHHHHHHhc--CCCEEEEEEeCCCCHHHHhhhhHH---HHHHHHcC-CcEEEEEeCCCchhHHHHHHHcCcCCCCeE
Q 018973          126 SIEEFDEALRLA--KNKLVVVEFAASRSLDSSKIYPFM---VDLSRQCN-DVEFILVMGDESEKTKELCEREKIKKVPHF  199 (348)
Q Consensus       126 s~~~f~~~l~~~--~~k~vvV~F~a~wC~~C~~~~p~l---~~la~~~~-~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~  199 (348)
                      +.++|++.+..+  ++++++|+||++||++|+.+.|.+   +++.+.+. ++.++.||+++.+ ..+++++|+|.++||+
T Consensus        12 ~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~~~v~~~Pt~   90 (130)
T 2kuc_A           12 RELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGE-GVELRKKYGVHAYPTL   90 (130)
T ss_dssp             BCCCHHHHHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSSSTT-HHHHHHHTTCCSSCEE
T ss_pred             ccCCHHHHHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcCeEEEEEecCCcc-hHHHHHHcCCCCCCEE
Confidence            445666665422  589999999999999999999999   77776654 4899999998422 5679999999999999


Q ss_pred             EEe-eccccccccccC
Q 018973          200 SFY-KSMEKIHEEEGI  214 (348)
Q Consensus       200 ~~~-~~g~~v~~~~G~  214 (348)
                      +++ ++|+.+.++.|.
T Consensus        91 ~~~d~~G~~~~~~~G~  106 (130)
T 2kuc_A           91 LFINSSGEVVYRLVGA  106 (130)
T ss_dssp             EEECTTSCEEEEEESC
T ss_pred             EEECCCCcEEEEecCC
Confidence            999 689998888774

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.53  E-value=2.2e-13  Score=136.02  Aligned_cols=186  Identities=17%  Similarity=0.211  Sum_probs=131.1

Q ss_pred             HHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeeccc
Q 018973          127 IEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSME  206 (348)
Q Consensus       127 ~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~  206 (348)
                      .+++++.+++. .++|.+.++.+.|..|+.+...++++++.-+.+.+.. + ++ + .         ...|+|.+.++|+
T Consensus         7 ~~~l~~~~~~~-~~~v~l~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~-~-~~-~-~---------~~~p~~~~~~~~~   72 (521)
T 1hyu_A            7 KTQLRAYLEKL-TKPVELIATLDDSAKSAEIKELLAEIAELSDKVTFKE-D-NT-L-P---------VRKPSFLITNPGS   72 (521)
T ss_dssp             HHHHHHHHTTC-CSCEEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEE-C-TT-S-S---------SCSSEEEEECTTC
T ss_pred             HHHHHHHHHhC-CCCEEEEEEeCCCcchHHHHHHHHHHHHhCCceEEEE-c-CC-c-c---------cCCCEEEEecCCC
Confidence            34556666542 5677777777889999999999999988766666533 2 11 1 0         5689999987765


Q ss_pred             cc-cccccCCC----CcccccccccCCCccceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHH
Q 018973          207 KI-HEEEGIGP----DQLMGDVLYYGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQ  281 (348)
Q Consensus       207 ~v-~~~~G~~~----~~l~~~v~~~~~~~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~  281 (348)
                      .. -+|.|...    ..+...+......+..    .+.+.+++ +...  +++..++.||++||++|+.+.|.+++++.+
T Consensus        73 ~~~i~f~g~p~g~e~~s~~~~l~~~~~~~~~----~~~~~~~~-i~~~--~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~  145 (521)
T 1hyu_A           73 QQGPRFAGSPLGHEFTSLVLALLWTGGHPSK----EAQSLLEQ-IRDI--DGDFEFETYYSLSCHNCPDVVQALNLMAVL  145 (521)
T ss_dssp             CCSCEEESCCCGGGHHHHHHHHHHHTTCCCC----SCHHHHHH-HHHC--CSCEEEEEEECTTCSSHHHHHHHHHHHHHH
T ss_pred             cceEEEeccCcchhHHHHHHHHHhhcCCCCC----CCHHHHHH-HHhc--CCCcceEEEECCCCcCcHHHHHHHHHHHhH
Confidence            32 23444221    2222222222221111    13344443 3432  467889999999999999999999999999


Q ss_pred             hCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCC-ChHHHHHHHHHH
Q 018973          282 MAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS-GKGELIGEILRY  341 (348)
Q Consensus       282 ~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~~  341 (348)
                      ++ ++.+..+|++++++   ++++|+|.++||+++  +|+.+..  |. +.++|.+++.+.
T Consensus       146 ~~-~v~~~~vd~~~~~~---~~~~~~i~svPt~~i--~g~~~~~--G~~~~~~l~~~l~~~  198 (521)
T 1hyu_A          146 NP-RIKHTAIDGGTFQN---EITERNVMGVPAVFV--NGKEFGQ--GRMTLTEIVAKVDTG  198 (521)
T ss_dssp             CT-TEEEEEEETTTCHH---HHHHTTCCSSSEEEE--TTEEEEE--SCCCHHHHHHHHCCS
T ss_pred             cC-ceEEEEEechhhHH---HHHHhCCCccCEEEE--CCEEEec--CCCCHHHHHHHHhhc
Confidence            86 79999999999988   999999999999977  9998865  88 889999887653

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=99.53  E-value=8e-15  Score=124.65  Aligned_cols=90  Identities=16%  Similarity=0.230  Sum_probs=68.1

Q ss_pred             CHHHHHHHHHhc--CCCEEEEEEeCCCCHHHHhhhhHH---HHHHHHcC-CcEEEEEeCCCchhH---------------
Q 018973          126 SIEEFDEALRLA--KNKLVVVEFAASRSLDSSKIYPFM---VDLSRQCN-DVEFILVMGDESEKT---------------  184 (348)
Q Consensus       126 s~~~f~~~l~~~--~~k~vvV~F~a~wC~~C~~~~p~l---~~la~~~~-~v~f~~vd~d~~~~~---------------  184 (348)
                      +..+|++.+..+  ++++|+|+|||+||+||+.+.+.+   .++.+.+. ++.|+.||+|+.++.               
T Consensus        32 ~~~~~~~~~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~  111 (172)
T 3f9u_A           32 KFDDYDLGMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDNKTPLTEPVKIMENGTERTL  111 (172)
T ss_dssp             CBSCHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEETTCCCEEEEEEEEEETTEEEEE
T ss_pred             chhhHHHHHHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCCEEEEEEecCcccccchhhhhhhcchhhhh
Confidence            566777766433  599999999999999999984443   44444444 599999999874320               


Q ss_pred             -------HHH-HHHcCcCCCCeEEEe-eccccccccccCC
Q 018973          185 -------KEL-CEREKIKKVPHFSFY-KSMEKIHEEEGIG  215 (348)
Q Consensus       185 -------~~l-~~~~~V~~~Pt~~~~-~~g~~v~~~~G~~  215 (348)
                             ..+ +++|+|.++||++++ ++|+.+.++.|..
T Consensus       112 ~~~~~~~~~~~~~~~~v~~~Pt~~lid~~G~~~~~~~G~~  151 (172)
T 3f9u_A          112 RTVGDKWSYLQRVKFGANAQPFYVLIDNEGNPLNKSYAYD  151 (172)
T ss_dssp             EEHHHHHHHHHHHHHSCCCSSEEEEECTTSCBSSCCBCSC
T ss_pred             hhhhhhhhHHHHHHcCCCCcceEEEECCCCCEEeeccCCC
Confidence                   111 689999999999999 7999999888854

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=99.52  E-value=1.8e-14  Score=122.47  Aligned_cols=93  Identities=14%  Similarity=0.224  Sum_probs=72.8

Q ss_pred             hhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCC---CCccceEEE
Q 018973          240 EDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMN---VVEVPTFLF  316 (348)
Q Consensus       240 ~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~---V~~~PTl~~  316 (348)
                      +++...+...  .+++++|+||++||++|+.+.|.|.++++.++ ++.|+.+|.+++++   ++++|+   +.++||+++
T Consensus        43 ~~~~~~l~~~--~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~-~v~~~~v~~d~~~~---~~~~~~~~~v~~iPt~i~  116 (167)
T 1z6n_A           43 SALTERLQRI--ERRYRLLVAGEMWCPDCQINLAALDFAQRLQP-NIELAIISKGRAED---DLRQRLALERIAIPLVLV  116 (167)
T ss_dssp             HHHHHHHHTC--CSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT-TEEEEEECHHHHHH---HTTTTTTCSSCCSSEEEE
T ss_pred             HHHHHHHHHh--CCCEEEEEEECCCChhHHHHHHHHHHHHHHCC-CcEEEEEECCCCHH---HHHHHHHcCCCCcCeEEE
Confidence            4444444433  47899999999999999999999999999885 59999999988776   888887   999999999


Q ss_pred             EeC-CeEEEEEeCCChHHHHHHHH
Q 018973          317 IRD-GQIRGRYVGSGKGELIGEIL  339 (348)
Q Consensus       317 ~~~-G~~v~~~~G~~~~~L~~~l~  339 (348)
                      +++ |+++.++.|.. ..+.+.+.
T Consensus       117 ~~~~G~~~~~~g~~p-~~~~~~i~  139 (167)
T 1z6n_A          117 LDEEFNLLGRFVERP-QAVLDGGP  139 (167)
T ss_dssp             ECTTCCEEEEEESSC-HHHHHHCH
T ss_pred             ECCCCCEEEEEcCCC-HHHHHhHH
Confidence            976 58888875443 33334433

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=99.51  E-value=9.7e-14  Score=113.77  Aligned_cols=92  Identities=17%  Similarity=0.256  Sum_probs=79.7

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCc------------------------hhHHHHHHhCC
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN------------------------DSCMQFLRDMN  307 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~------------------------~~~~~l~~~~~  307 (348)
                      .+++++|+||++||++|+.+.|.+.++.+++++++.++.|+++..                        +...+++++|+
T Consensus        28 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  107 (148)
T 2b5x_A           28 GEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAFE  107 (148)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHHHHTC
T ss_pred             CCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCCcEEEEEEcCCCccccCHHHHHHHHHHcCCCcceEECCchhHHHHhC
Confidence            478999999999999999999999999999977799999996531                        11123899999


Q ss_pred             CCccceEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973          308 VVEVPTFLFI-RDGQIRGRYVGS-GKGELIGEILRYQG  343 (348)
Q Consensus       308 V~~~PTl~~~-~~G~~v~~~~G~-~~~~L~~~l~~~~~  343 (348)
                      |.++||++++ ++|+++.++.|. +.++|.+.|++++.
T Consensus       108 v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~  145 (148)
T 2b5x_A          108 NEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNRVLA  145 (148)
T ss_dssp             CCCSSEEEEECTTCBEEEEEESCSTTHHHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCCcEEEEecCCCCHHHHHHHHHHHHh
Confidence            9999998888 899999999998 89999999998875

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=99.51  E-value=8.1e-15  Score=109.20  Aligned_cols=68  Identities=15%  Similarity=0.109  Sum_probs=60.4

Q ss_pred             CEEEEEEeCCCCHHHHhhhhHHHHHHHHcC-CcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeeccccccccccC
Q 018973          140 KLVVVEFAASRSLDSSKIYPFMVDLSRQCN-DVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGI  214 (348)
Q Consensus       140 k~vvV~F~a~wC~~C~~~~p~l~~la~~~~-~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~~v~~~~G~  214 (348)
                      .+++|+||++||++|+.+.|.|++++++++ ++.|+.+|+++.+   +++++|||+++||+++  +|+.  ++.|.
T Consensus         3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~v~~~Pt~~~--~G~~--~~~G~   71 (85)
T 1fo5_A            3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENP---QKAMEYGIMAVPTIVI--NGDV--EFIGA   71 (85)
T ss_dssp             CEEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSC---CTTTSTTTCCSSEEEE--TTEE--ECCSS
T ss_pred             ceEEEEEeCCCCCchHHHHHHHHHHHHHcCCceEEEEEECCCCH---HHHHHCCCcccCEEEE--CCEE--eeecC
Confidence            578999999999999999999999999998 5999999999854   4899999999999988  7776  55663

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=99.51  E-value=1.9e-15  Score=120.20  Aligned_cols=78  Identities=12%  Similarity=0.034  Sum_probs=60.7

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHc---CCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeeccccccccccC
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQC---NDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGI  214 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~---~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~~v~~~~G~  214 (348)
                      +...+||+|||+||++|+.+.+.+....+..   ..+.+++||+++.. ..+++.+|+|.++|||++|++|+++.++.|.
T Consensus        17 ~~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~~~~-~~~la~~~~V~g~PT~i~f~~G~ev~Ri~G~   95 (116)
T 3dml_A           17 KAELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPL-PPGLELARPVTFTPTFVLMAGDVESGRLEGY   95 (116)
T ss_dssp             --CEEEEEEECTTCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETTSCC-CTTCBCSSCCCSSSEEEEEETTEEEEEEECC
T ss_pred             cCCCEEEEEECCCCHHHHHHHHHHHhhHHHhhhcccceEEEEECCCCC-chhHHHHCCCCCCCEEEEEECCEEEeeecCC
Confidence            3578999999999999999986554332221   12688999988743 2358899999999999999999999999996


Q ss_pred             CC
Q 018973          215 GP  216 (348)
Q Consensus       215 ~~  216 (348)
                      ..
T Consensus        96 ~~   97 (116)
T 3dml_A           96 PG   97 (116)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=99.51  E-value=2.2e-14  Score=120.12  Aligned_cols=77  Identities=14%  Similarity=0.198  Sum_probs=66.5

Q ss_pred             CCCEEEEEEe-CCCCHHHHhhhhHH---HHHHHHc-CCcEEEEEeCCCc--------hhHHHHHHHcCcCCCCeEEEe-e
Q 018973          138 KNKLVVVEFA-ASRSLDSSKIYPFM---VDLSRQC-NDVEFILVMGDES--------EKTKELCEREKIKKVPHFSFY-K  203 (348)
Q Consensus       138 ~~k~vvV~F~-a~wC~~C~~~~p~l---~~la~~~-~~v~f~~vd~d~~--------~~~~~l~~~~~V~~~Pt~~~~-~  203 (348)
                      ++++|+|+|| |+||++|+.+.|.+   .++.+.+ .++.++.||+++.        +...+++++|+|.++||++++ +
T Consensus        46 ~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~d~  125 (154)
T 2ju5_A           46 DHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKAQYKVTGFPELVFIDA  125 (154)
T ss_dssp             HCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEECCSSCCCCHHHHHHHHHHHHHTTCCSSSEEEEECT
T ss_pred             CCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCcEEEEEecCccccCCChhhHhhHHHHHHHcCCCCCCEEEEEcC
Confidence            4899999999 99999999999999   7776665 4599999999874        345689999999999999999 7


Q ss_pred             ccccccccccCC
Q 018973          204 SMEKIHEEEGIG  215 (348)
Q Consensus       204 ~g~~v~~~~G~~  215 (348)
                      +|+.+.++ |..
T Consensus       126 ~G~~~~~~-G~~  136 (154)
T 2ju5_A          126 EGKQLARM-GFE  136 (154)
T ss_dssp             TCCEEEEE-CCC
T ss_pred             CCCEEEEe-cCC
Confidence            89999888 754

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=99.26  E-value=1.4e-15  Score=123.06  Aligned_cols=83  Identities=20%  Similarity=0.283  Sum_probs=70.2

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHH---HHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCeEEEe--ecccc--cc
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFM---VDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPHFSFY--KSMEK--IH  209 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l---~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~--~~g~~--v~  209 (348)
                      .++++||+|||+||++|+.+.|.+   +++++.+++ +.|+.||++..+ ..+++++|+|+++||+++|  ++|+.  +.
T Consensus        18 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~~~v~~~Pt~~~~d~~~G~~~~~~   96 (130)
T 2lst_A           18 HGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPE-GQELARRYRVPGTPTFVFLVPKAGAWEEVG   96 (130)
Confidence            589999999999999999999999   999988876 999999986422 5679999999999999999  67988  88


Q ss_pred             ccccCC-CCcccc
Q 018973          210 EEEGIG-PDQLMG  221 (348)
Q Consensus       210 ~~~G~~-~~~l~~  221 (348)
                      ++.|.. .+.+..
T Consensus        97 ~~~G~~~~~~l~~  109 (130)
T 2lst_A           97 RLFGSRPRAEFLK  109 (130)
Confidence            888853 444443

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=99.50  E-value=3.9e-14  Score=115.62  Aligned_cols=85  Identities=9%  Similarity=0.161  Sum_probs=73.6

Q ss_pred             CceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCC--C
Q 018973          120 RVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKK--V  196 (348)
Q Consensus       120 ~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~--~  196 (348)
                      .+.++ |.++|++.+.  .+.+|+|+|||+ |++|+.+.|.|++++++|.+ +.|++||+|+.+   +++++|||++  +
T Consensus         7 lv~~~-t~~~f~~~~~--~~~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~gk~~f~~vd~d~~~---~~a~~~gi~~~~i   79 (133)
T 2djk_A            7 LIGEI-GPETYSDYMS--AGIPLAYIFAET-AEERKELSDKLKPIAEAQRGVINFGTIDAKAFG---AHAGNLNLKTDKF   79 (133)
T ss_dssp             CSEEC-CHHHHHHHHH--TTSCEEEEECSC-SSSHHHHHHHHHHHHHSSTTTSEEEEECTTTTG---GGTTTTTCCSSSS
T ss_pred             ceecc-ChHHHHHHhc--CCCCEEEEEecC-hhhHHHHHHHHHHHHHHhCCeEEEEEEchHHhH---HHHHHcCCCcccC
Confidence            35666 8899998875  688999999999 89999999999999999976 999999999854   4999999999  9


Q ss_pred             CeEEEeec--cccccccc
Q 018973          197 PHFSFYKS--MEKIHEEE  212 (348)
Q Consensus       197 Pt~~~~~~--g~~v~~~~  212 (348)
                      ||+++|++  |+. ..+.
T Consensus        80 Ptl~i~~~~~g~~-~~~~   96 (133)
T 2djk_A           80 PAFAIQEVAKNQK-FPFD   96 (133)
T ss_dssp             SEEEEECTTTCCB-CCCC
T ss_pred             CEEEEEecCcCcc-cCCC
Confidence            99999987  665 3443

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.50  E-value=1.2e-13  Score=111.77  Aligned_cols=89  Identities=20%  Similarity=0.233  Sum_probs=76.8

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchh-------------------HHHHHHhCCCCccc
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDS-------------------CMQFLRDMNVVEVP  312 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~-------------------~~~l~~~~~V~~~P  312 (348)
                      .+++++|+||++||++|+.+.|.+.++.++++ ++.++.|+++...+                   ..+++++|++.++|
T Consensus        23 ~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P  101 (136)
T 1lu4_A           23 QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP-AVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQP  101 (136)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCSSS
T ss_pred             CCCEEEEEEECCcChhHHHHHHHHHHHHHHCC-CcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchhHHHhcCCCCCC
Confidence            47899999999999999999999999999997 79999999887210                   12388899999999


Q ss_pred             eEEEE-eCCeEEEEEe---CC-ChHHHHHHHHHHh
Q 018973          313 TFLFI-RDGQIRGRYV---GS-GKGELIGEILRYQ  342 (348)
Q Consensus       313 Tl~~~-~~G~~v~~~~---G~-~~~~L~~~l~~~~  342 (348)
                      +++++ ++|+++ ++.   |. +.++|.++|++++
T Consensus       102 ~~~lid~~G~i~-~~~~~~g~~~~~~l~~~l~~ll  135 (136)
T 1lu4_A          102 AFVFYRADGTST-FVNNPTAAMSQDELSGRVAALT  135 (136)
T ss_dssp             EEEEECTTSCEE-EECCSSSCCCHHHHHHHHHHC-
T ss_pred             EEEEECCCCcEE-EEEcCCCccCHHHHHHHHHHHh
Confidence            98888 799999 999   98 9999999998764

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=99.49  E-value=8e-15  Score=109.22  Aligned_cols=67  Identities=7%  Similarity=0.012  Sum_probs=59.2

Q ss_pred             EEEEEEeCCCCHHHHhhhhHHHHHHHHcC-CcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeeccccccccccC
Q 018973          141 LVVVEFAASRSLDSSKIYPFMVDLSRQCN-DVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGI  214 (348)
Q Consensus       141 ~vvV~F~a~wC~~C~~~~p~l~~la~~~~-~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~~v~~~~G~  214 (348)
                      .++|+||++||++|+.+.|.+++++++++ ++.|+.+|+|+.+   +++++|||+++||+++  +|+.  ++.|.
T Consensus         3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~v~~~Pt~~~--~G~~--~~~G~   70 (85)
T 1nho_A            3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDR---EKAIEYGLMAVPAIAI--NGVV--RFVGA   70 (85)
T ss_dssp             CCEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCG---GGGGGTCSSCSSEEEE--TTTE--EEECS
T ss_pred             EEEEEEECCCCcchHHHHHHHHHHHHHhcCCeEEEEEECCCCH---HHHHhCCceeeCEEEE--CCEE--EEccC
Confidence            46899999999999999999999999998 5999999999854   4999999999999988  7776  55563

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=99.48  E-value=7.7e-14  Score=125.35  Aligned_cols=96  Identities=17%  Similarity=0.172  Sum_probs=78.8

Q ss_pred             CceEecCHHHHHHHHHhcCCCEEEEEEeC--CCCHHHHhhhhHHHHHHHHcC---CcEEEEEeCCC--chhHHHHHHHcC
Q 018973          120 RVKKVHSIEEFDEALRLAKNKLVVVEFAA--SRSLDSSKIYPFMVDLSRQCN---DVEFILVMGDE--SEKTKELCEREK  192 (348)
Q Consensus       120 ~v~~v~s~~~f~~~l~~~~~k~vvV~F~a--~wC~~C~~~~p~l~~la~~~~---~v~f~~vd~d~--~~~~~~l~~~~~  192 (348)
                      .++.+ +.++|++++.  .+++|+|+|||  |||+    +.|.|+++++++.   ++.|++||+|+  +...+++|++|+
T Consensus         6 ~v~~L-t~~nF~~~i~--~~~~vlV~FyA~~pWCg----l~P~~e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~~   78 (240)
T 2qc7_A            6 GALPL-DTVTFYKVIP--KSKFVLVKFDTQYPYGE----KQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYK   78 (240)
T ss_dssp             TCEEC-CTTHHHHHGG--GCSEEEEEECCSSCCSH----HHHHHHHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHTT
T ss_pred             CceEC-CHHHHHHHHc--CCCCEEEEEeCCCCCCc----chHHHHHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHcC
Confidence            46666 7899999885  57899999999  9999    9999999999974   59999999776  555678999999


Q ss_pred             cC--CCCeEEEeeccc--cccccccC-CCCccccc
Q 018973          193 IK--KVPHFSFYKSME--KIHEEEGI-GPDQLMGD  222 (348)
Q Consensus       193 V~--~~Pt~~~~~~g~--~v~~~~G~-~~~~l~~~  222 (348)
                      |+  ++||+++|++|+  ...++.|. ..+.|...
T Consensus        79 V~~~~~PTl~~f~~G~~~~~~~y~G~~~~~~L~~f  113 (240)
T 2qc7_A           79 LDKESYPVFYLFRDGDFENPVPYTGAVKVGAIQRW  113 (240)
T ss_dssp             CCGGGCSEEEEEETTCSSCCEECCSCSCHHHHHHH
T ss_pred             CCCCCCCEEEEEeCCCcCcceeecCCCCHHHHHHH
Confidence            99  999999999998  45677774 34444443

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=99.48  E-value=1.8e-13  Score=111.81  Aligned_cols=87  Identities=17%  Similarity=0.342  Sum_probs=75.0

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhC-CcEEEEEEECCCch----------------------hHHHHHHhCCC
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMA-GTVVFARMNGDEND----------------------SCMQFLRDMNV  308 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~~~----------------------~~~~l~~~~~V  308 (348)
                      .+++++|+||++||++|+.+.|.+.++.++++ .++.++.|+++..+                      ...+++++|+|
T Consensus        33 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  112 (145)
T 3erw_A           33 KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKEYHI  112 (145)
T ss_dssp             TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHHTTC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHhcCc
Confidence            47899999999999999999999999999997 56999999986411                      01138999999


Q ss_pred             CccceEEEE-eCCeEEEEEeCC-ChHHHHHHH
Q 018973          309 VEVPTFLFI-RDGQIRGRYVGS-GKGELIGEI  338 (348)
Q Consensus       309 ~~~PTl~~~-~~G~~v~~~~G~-~~~~L~~~l  338 (348)
                      .++|+++++ ++|+++.++.|. +.++|.++|
T Consensus       113 ~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l  144 (145)
T 3erw_A          113 ITIPTSFLLNEKGEIEKTKIGPMTAEQLKEWT  144 (145)
T ss_dssp             CEESEEEEECTTCCEEEEEESCCCHHHHHHHH
T ss_pred             CccCeEEEEcCCCcEEEEEcCCcCHHHHHHhh
Confidence            999998888 899999999999 999998876

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=99.48  E-value=2.9e-13  Score=111.98  Aligned_cols=93  Identities=19%  Similarity=0.275  Sum_probs=80.0

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchh-------------------HHHHHHhCCCCcc
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDS-------------------CMQFLRDMNVVEV  311 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~-------------------~~~l~~~~~V~~~  311 (348)
                      .+++++|+||++||++|+.+.|.+.++.+++++ ++.++.|+++..++                   ..++++.|+|.++
T Consensus        25 ~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  104 (151)
T 2f9s_A           25 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPL  104 (151)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTTCCSS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcCCCCC
Confidence            478999999999999999999999999999865 49999999876421                   1248889999999


Q ss_pred             ceEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHhCC
Q 018973          312 PTFLFI-RDGQIRGRYVGS-GKGELIGEILRYQGV  344 (348)
Q Consensus       312 PTl~~~-~~G~~v~~~~G~-~~~~L~~~l~~~~~~  344 (348)
                      ||++++ ++|+++.++.|. +.++|.+.|++++..
T Consensus       105 P~~~lid~~G~i~~~~~G~~~~~~l~~~l~~ll~~  139 (151)
T 2f9s_A          105 PTTFLINPEGKVVKVVTGTMTESMIHDYMNLIKPG  139 (151)
T ss_dssp             CEEEEECTTSEEEEEEESCCCHHHHHHHHHHHSCC
T ss_pred             CeEEEECCCCcEEEEEeCCCCHHHHHHHHHHHHhh
Confidence            997777 899999999999 999999999988654

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=99.48  E-value=3.2e-13  Score=111.93  Aligned_cols=93  Identities=18%  Similarity=0.312  Sum_probs=78.9

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhC-CcEEEEEEECCCchh---------------------HHHHHHhCC--
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMA-GTVVFARMNGDENDS---------------------CMQFLRDMN--  307 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~~~~---------------------~~~l~~~~~--  307 (348)
                      .+++++|+||++||++|+.+.|.|.++.+++. .++.++.|+++..+.                     ..++++.|+  
T Consensus        23 ~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (151)
T 3raz_A           23 KAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGNT  102 (151)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHHHHHHTTTCC
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCChHHHHHHHHHcCCCCceEecCccchHHHHHHhCCc
Confidence            47999999999999999999999999999984 459999999974333                     234677788  


Q ss_pred             CCccceEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHhCC
Q 018973          308 VVEVPTFLFI-RDGQIRGRYVGS-GKGELIGEILRYQGV  344 (348)
Q Consensus       308 V~~~PTl~~~-~~G~~v~~~~G~-~~~~L~~~l~~~~~~  344 (348)
                      +.++|+++++ ++|+++.++.|. +.++|.+.|+++...
T Consensus       103 v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l~~~  141 (151)
T 3raz_A          103 VGVLPFTVVEAPKCGYRQTITGEVNEKSLTDAVKLAHSK  141 (151)
T ss_dssp             SCCSSEEEEEETTTTEEEECCSCCCHHHHHHHHHHHHTC
T ss_pred             cCCCCEEEEECCCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            9999976555 899999999999 999999999988654

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=99.48  E-value=1.6e-13  Score=136.60  Aligned_cols=106  Identities=16%  Similarity=0.232  Sum_probs=89.1

Q ss_pred             ceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC---cEEEEEEECCC--chhHHHHHHhC
Q 018973          232 AVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG---TVVFARMNGDE--NDSCMQFLRDM  306 (348)
Q Consensus       232 ~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~---~v~~~~vd~~~--~~~~~~l~~~~  306 (348)
                      .+..+ +.++|++.+.+   .+++++|+|||+||++|+.+.|.|+++++++++   .+.|+.||++.  +.+   ++++|
T Consensus        13 ~V~~L-t~~~f~~~v~~---~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~~~~---l~~~~   85 (519)
T 3t58_A           13 PLTLL-DADSVRPTVLG---SSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSA---VCREF   85 (519)
T ss_dssp             SSEEE-CTTTHHHHHSS---CSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGGGHH---HHHHT
T ss_pred             CcEEC-ChHHHHHHHHh---CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccccHH---HHHHc
Confidence            34444 45778877754   479999999999999999999999999999976   69999999965  444   99999


Q ss_pred             CCCccceEEEEe----CCeEEEEEeCC-ChHHHHHHHHHHhCC
Q 018973          307 NVVEVPTFLFIR----DGQIRGRYVGS-GKGELIGEILRYQGV  344 (348)
Q Consensus       307 ~V~~~PTl~~~~----~G~~v~~~~G~-~~~~L~~~l~~~~~~  344 (348)
                      +|.++||+++|+    +|+.+..+.|. +.++|.++|.+++..
T Consensus        86 ~V~~~PTl~~f~~g~~~G~~~~~~~g~~~~~~L~~~l~~~l~~  128 (519)
T 3t58_A           86 NIAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALES  128 (519)
T ss_dssp             TCCSBSEEEEECTTCCSCCCEEECCSSCCHHHHHHHHHHHHTT
T ss_pred             CCcccCEEEEEcCcccCCCceeEecCCCCHHHHHHHHHHHHhh
Confidence            999999999998    56666677777 999999999998764

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=99.48  E-value=2.7e-13  Score=109.34  Aligned_cols=90  Identities=20%  Similarity=0.302  Sum_probs=77.4

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCc--------------------hhHHHHHHhCCCCcc
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN--------------------DSCMQFLRDMNVVEV  311 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~--------------------~~~~~l~~~~~V~~~  311 (348)
                      .+++++|+||++||++|+.+.+.+.++.++++ ++.++.|+++..                    +...+++++|+|.++
T Consensus        24 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~  102 (136)
T 1zzo_A           24 LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP-EVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQ  102 (136)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCCSS
T ss_pred             CCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC-CeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCcHHHHHcCCCCC
Confidence            47899999999999999999999999999997 799999998642                    111248899999999


Q ss_pred             ceEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973          312 PTFLFI-RDGQIRGRYVGS-GKGELIGEILRYQG  343 (348)
Q Consensus       312 PTl~~~-~~G~~v~~~~G~-~~~~L~~~l~~~~~  343 (348)
                      |+++++ ++|+++ ++.|. +.++|.+.|+++++
T Consensus       103 P~~~~id~~g~i~-~~~g~~~~~~l~~~l~~~l~  135 (136)
T 1zzo_A          103 PAYAFVDPHGNVD-VVRGRMSQDELTRRVTALTS  135 (136)
T ss_dssp             SEEEEECTTCCEE-EEESCCCHHHHHHHHHHHC-
T ss_pred             ceEEEECCCCCEE-EEecCCCHHHHHHHHHHHhc
Confidence            998888 699999 99999 99999999998764

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=99.47  E-value=3.9e-13  Score=112.55  Aligned_cols=93  Identities=18%  Similarity=0.394  Sum_probs=77.9

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCc-EEEEEEECCCchh-HHHHHHhC-----------------------
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGT-VVFARMNGDENDS-CMQFLRDM-----------------------  306 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~~~~~~-~~~l~~~~-----------------------  306 (348)
                      .+++++|+||++||++|+.+.|.+.++.++++++ +.++.|+++...+ .+++.+++                       
T Consensus        33 ~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (165)
T 3or5_A           33 KGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNVKNYMKTQGIIYPVMMATPELIRAFNGYIDG  112 (165)
T ss_dssp             TTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCCHHHHHHHHHHHTCCSCEEECCHHHHHHHHTTSTT
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCCceEecCHHHHHHHhhhhcc
Confidence            4789999999999999999999999999999765 9999999987653 22232222                       


Q ss_pred             CCCccceEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHhCC
Q 018973          307 NVVEVPTFLFI-RDGQIRGRYVGS-GKGELIGEILRYQGV  344 (348)
Q Consensus       307 ~V~~~PTl~~~-~~G~~v~~~~G~-~~~~L~~~l~~~~~~  344 (348)
                      ++.++|+++++ ++|+++.++.|. +.++|.++|+++++.
T Consensus       113 ~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~  152 (165)
T 3or5_A          113 GITGIPTSFVIDASGNVSGVIVGPRSKADFDRIVKMALGA  152 (165)
T ss_dssp             CSCSSSEEEEECTTSBEEEEECSCCCHHHHHHHHHHHHC-
T ss_pred             CCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHhh
Confidence            89999987666 899999999999 899999999998754

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=99.47  E-value=9.8e-15  Score=123.67  Aligned_cols=85  Identities=15%  Similarity=0.085  Sum_probs=68.7

Q ss_pred             HHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC-CcEEEEEeCCCchhHHHHHHHcCc--CCCCeEEEe-e
Q 018973          128 EEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN-DVEFILVMGDESEKTKELCEREKI--KKVPHFSFY-K  203 (348)
Q Consensus       128 ~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~-~v~f~~vd~d~~~~~~~l~~~~~V--~~~Pt~~~~-~  203 (348)
                      +.|+....  ++++|||+|||+||++|+.+.|.|+++++.+. ++.|+.||+|+.++  .++.+|++  +.+||+++| +
T Consensus        37 ~~~~~~~~--~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~~~~~~~v~~d~~~~--~~~~~~~~~~~~~Pt~~~~d~  112 (164)
T 1sen_A           37 DGKKEAAA--SGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEE--PKDEDFSPDGGYIPRILFLDP  112 (164)
T ss_dssp             HHHHHHHH--HTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGS--CSCGGGCTTCSCSSEEEEECT
T ss_pred             HHHHHHHh--cCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhcCCeEEEEEecCCch--HHHHHhcccCCcCCeEEEECC
Confidence            55665554  58999999999999999999999999877654 37888888887432  16778888  669999999 7


Q ss_pred             ccccccccccCCC
Q 018973          204 SMEKIHEEEGIGP  216 (348)
Q Consensus       204 ~g~~v~~~~G~~~  216 (348)
                      +|+.+.++.|...
T Consensus       113 ~G~~~~~~~G~~~  125 (164)
T 1sen_A          113 SGKVHPEIINENG  125 (164)
T ss_dssp             TSCBCTTCCCTTS
T ss_pred             CCCEEEEEeCCCC
Confidence            9999998888543

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=99.46  E-value=3.2e-13  Score=111.61  Aligned_cols=94  Identities=23%  Similarity=0.471  Sum_probs=81.3

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchh-H-------------------HHHHHhCCCCc
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDS-C-------------------MQFLRDMNVVE  310 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~-~-------------------~~l~~~~~V~~  310 (348)
                      .+++++|+||++||++|+.+.+.+.++.+++++ ++.++.|+.+...+ .                   .+++++|+|.+
T Consensus        29 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  108 (152)
T 2lja_A           29 KGKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLING  108 (152)
T ss_dssp             TTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTTCCS
T ss_pred             CCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcCcCC
Confidence            478999999999999999999999999999975 49999999987641 0                   14889999999


Q ss_pred             cceEEEEe-CCeEEEEEeCC-ChHHHHHHHHHHhCCC
Q 018973          311 VPTFLFIR-DGQIRGRYVGS-GKGELIGEILRYQGVR  345 (348)
Q Consensus       311 ~PTl~~~~-~G~~v~~~~G~-~~~~L~~~l~~~~~~~  345 (348)
                      +|+++++. +|+++.++.|. +.++|.+.|+++.+.+
T Consensus       109 ~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~~~~  145 (152)
T 2lja_A          109 IPRFILLDRDGKIISANMTRPSDPKTAEKFNELLGLE  145 (152)
T ss_dssp             SCCEEEECTTSCEEESSCCCTTCHHHHHHHHHHHTCC
T ss_pred             CCEEEEECCCCeEEEccCCCCCHHHHHHHHHHHhccc
Confidence            99988885 99999999998 8999999999987643

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=99.46  E-value=6.6e-14  Score=119.46  Aligned_cols=80  Identities=15%  Similarity=0.061  Sum_probs=65.7

Q ss_pred             CHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhH-H--HHHHHHcC-CcEEEEEeCCCchhHHHHHHHc--------Cc
Q 018973          126 SIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPF-M--VDLSRQCN-DVEFILVMGDESEKTKELCERE--------KI  193 (348)
Q Consensus       126 s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~-l--~~la~~~~-~v~f~~vd~d~~~~~~~l~~~~--------~V  193 (348)
                      +.+.|+.+..  .+|+|+|+|||+||++|+.|.|. +  .++++.+. ++.+++||.|+.   +++++.|        ||
T Consensus        28 ~~ea~~~A~~--~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~fv~ikVD~de~---~~l~~~y~~~~q~~~gv  102 (173)
T 3ira_A           28 GEEAFEKARK--ENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEAFVSIKVDREER---PDIDNIYMTVCQIILGR  102 (173)
T ss_dssp             SHHHHHHHHH--HTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHHCEEEEEETTTC---HHHHHHHHHHHHHHHSC
T ss_pred             CHHHHHHHHH--hCCCEEEecccchhHhhccccccccCCHHHHHHHHhcCceeeeCCccc---CcHHHHHHHHHHHHcCC
Confidence            4677887776  68999999999999999999983 3  46666554 489999999984   4577777        99


Q ss_pred             CCCCeEEEee-ccccccc
Q 018973          194 KKVPHFSFYK-SMEKIHE  210 (348)
Q Consensus       194 ~~~Pt~~~~~-~g~~v~~  210 (348)
                      .++||++|+. +|+++..
T Consensus       103 ~g~Pt~v~l~~dG~~v~~  120 (173)
T 3ira_A          103 GGWPLNIIMTPGKKPFFA  120 (173)
T ss_dssp             CCSSEEEEECTTSCEEEE
T ss_pred             CCCcceeeECCCCCceee
Confidence            9999999996 8888764

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.46  E-value=2.6e-13  Score=120.16  Aligned_cols=101  Identities=16%  Similarity=0.207  Sum_probs=84.0

Q ss_pred             cCChhhHHHHh-hhcccCCcEEEEEEeCC-CChhhhhhhhHHHHHHHHhCCcEEEEEEECCC--chhHHHHHHhCCCCcc
Q 018973          236 LHSKEDVEKLI-DDHKVDQKLIVLDVGLK-HCGPCVKVYPTVIKLSRQMAGTVVFARMNGDE--NDSCMQFLRDMNVVEV  311 (348)
Q Consensus       236 ~~s~~~~~~~l-~~~~~~~k~vvV~F~a~-wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~--~~~~~~l~~~~~V~~~  311 (348)
                      ..+.+++++.+ ...  .+..++++||++ ||++|+.+.|.++++++. .+++.|+.+|+++  +++   ++++|+|.++
T Consensus         6 ~~~~~~~~~~~~~~~--~~~v~lv~f~~~~~C~~C~~~~~~~~~la~~-~~~v~~~~vd~~~~~~~~---~~~~~~v~~~   79 (226)
T 1a8l_A            6 DADKKVIKEEFFSKM--VNPVKLIVFVRKDHCQYCDQLKQLVQELSEL-TDKLSYEIVDFDTPEGKE---LAKRYRIDRA   79 (226)
T ss_dssp             HHHHHHHHHHTGGGC--CSCEEEEEEECSSSCTTHHHHHHHHHHHHTT-CTTEEEEEEETTSHHHHH---HHHHTTCCSS
T ss_pred             HHHHHHHHHHHHHhc--CCCeEEEEEecCCCCchhHHHHHHHHHHHhh-CCceEEEEEeCCCcccHH---HHHHcCCCcC
Confidence            34556777777 332  467788999999 999999999999999865 4679999999997  665   9999999999


Q ss_pred             ceEEEEeCCeEE-EEEeCC-ChHHHHHHHHHHh
Q 018973          312 PTFLFIRDGQIR-GRYVGS-GKGELIGEILRYQ  342 (348)
Q Consensus       312 PTl~~~~~G~~v-~~~~G~-~~~~L~~~l~~~~  342 (348)
                      ||+++|++|+.. .++.|. +.+++..++...+
T Consensus        80 Pt~~~~~~g~~~~~~~~G~~~~~~l~~~l~~~l  112 (226)
T 1a8l_A           80 PATTITQDGKDFGVRYFGLPAGHEFAAFLEDIV  112 (226)
T ss_dssp             SEEEEEETTBCCSEEEESCCCTTHHHHHHHHHH
T ss_pred             ceEEEEcCCceeeEEEeccCcHHHHHHHHHHHH
Confidence            999999999865 788898 7788888887754

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=99.46  E-value=3.3e-13  Score=121.72  Aligned_cols=98  Identities=12%  Similarity=0.120  Sum_probs=83.6

Q ss_pred             eeecCChhhHHHHhhhcccCCcEEEEEEe--CCCChhhhhhhhHHHHHHHHhC---CcEEEEEEECCC-----chhHHHH
Q 018973          233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVG--LKHCGPCVKVYPTVIKLSRQMA---GTVVFARMNGDE-----NDSCMQF  302 (348)
Q Consensus       233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~--a~wC~~C~~~~p~l~~la~~~~---~~v~~~~vd~~~-----~~~~~~l  302 (348)
                      +..+ +.++|++++.    .+++++|+||  +|||+    +.|.|.++++.+.   +++.|++||+++     +++   +
T Consensus        18 v~~L-t~~nF~~vi~----~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~---l   85 (248)
T 2c0g_A           18 CVDL-DELSFEKTVE----RFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKA---L   85 (248)
T ss_dssp             CEEC-CTTTHHHHHT----TSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHH---H
T ss_pred             cEEC-CHHHHHHHHh----cCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCcccccccHH---H
Confidence            3444 5678988764    4689999999  99998    9999999999983   469999999998     565   9


Q ss_pred             HHhCCCC--ccceEEEEeCCeE--EEEE--eCC-ChHHHHHHHHHHhC
Q 018973          303 LRDMNVV--EVPTFLFIRDGQI--RGRY--VGS-GKGELIGEILRYQG  343 (348)
Q Consensus       303 ~~~~~V~--~~PTl~~~~~G~~--v~~~--~G~-~~~~L~~~l~~~~~  343 (348)
                      +++|+|.  ++||+++|+ |+.  ..++  .|. +.+.|.++|.++.+
T Consensus        86 a~~~~V~~~~~PTl~~F~-G~~~~~~~y~~~G~~~~~~L~~fi~~~~~  132 (248)
T 2c0g_A           86 GDRYKVDDKNFPSIFLFK-GNADEYVQLPSHVDVTLDNLKAFVSANTP  132 (248)
T ss_dssp             HHHTTCCTTSCCEEEEES-SSSSSEEECCTTSCCCHHHHHHHHHHHSS
T ss_pred             HHHhCCCcCCCCeEEEEe-CCcCcceeecccCCCCHHHHHHHHHHhhc
Confidence            9999999  999999999 983  5667  787 99999999999876

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=99.46  E-value=2.1e-13  Score=99.66  Aligned_cols=73  Identities=12%  Similarity=0.286  Sum_probs=63.5

Q ss_pred             EEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCC--ChHH
Q 018973          256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS--GKGE  333 (348)
Q Consensus       256 vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~--~~~~  333 (348)
                      +.|.||++||++|+.+.|.++++++++++++.++.+|   +.+   ++++|+|.++||+++  +|+.+.+  |.  +.++
T Consensus         2 ~~v~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~---~~~---~~~~~~v~~~Pt~~~--~G~~~~~--G~~~~~~~   71 (77)
T 1ilo_A            2 MKIQIYGTGCANCQMLEKNAREAVKELGIDAEFEKIK---EMD---QILEAGLTALPGLAV--DGELKIM--GRVASKEE   71 (77)
T ss_dssp             EEEEEECSSSSTTHHHHHHHHHHHHHTTCCEEEEEEC---SHH---HHHHHTCSSSSCEEE--TTEEEEC--SSCCCHHH
T ss_pred             cEEEEEcCCChhHHHHHHHHHHHHHHcCCceEEEEec---CHH---HHHHCCCCcCCEEEE--CCEEEEc--CCCCCHHH
Confidence            4689999999999999999999999998779999998   444   899999999999988  9998776  65  6788


Q ss_pred             HHHHH
Q 018973          334 LIGEI  338 (348)
Q Consensus       334 L~~~l  338 (348)
                      |.++|
T Consensus        72 l~~~l   76 (77)
T 1ilo_A           72 IKKIL   76 (77)
T ss_dssp             HHHHC
T ss_pred             HHHHh
Confidence            87765

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=99.46  E-value=5.4e-13  Score=111.09  Aligned_cols=93  Identities=22%  Similarity=0.275  Sum_probs=77.7

Q ss_pred             CCcEEEEEEeCCCChhhhhh-hhHHHHHHHHhCC-cEEEEEEECCC-------chhHH----------------------
Q 018973          252 DQKLIVLDVGLKHCGPCVKV-YPTVIKLSRQMAG-TVVFARMNGDE-------NDSCM----------------------  300 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~-~p~l~~la~~~~~-~v~~~~vd~~~-------~~~~~----------------------  300 (348)
                      .+++++|+||++||++|+.+ .|.|.++.+++++ ++.++.|+++.       .+..+                      
T Consensus        27 ~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  106 (158)
T 3eyt_A           27 RGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGAM  106 (158)
T ss_dssp             TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCSSSS
T ss_pred             CCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEcCccchhh
Confidence            47899999999999999996 9999999999973 59999998641       00000                      


Q ss_pred             -HHHHhCCCCccceEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHhCC
Q 018973          301 -QFLRDMNVVEVPTFLFI-RDGQIRGRYVGS-GKGELIGEILRYQGV  344 (348)
Q Consensus       301 -~l~~~~~V~~~PTl~~~-~~G~~v~~~~G~-~~~~L~~~l~~~~~~  344 (348)
                       .+++.|+|.++|+++++ ++|+++.++.|. +.++|.+.|+++++.
T Consensus       107 ~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~  153 (158)
T 3eyt_A          107 PRTMAAYQMRGTPSLLLIDKAGDLRAHHFGDVSELLLGAEIATLLGE  153 (158)
T ss_dssp             CHHHHHTTCCSSSEEEEECTTSEEEEEEESCCCHHHHHHHHHHHHTS
T ss_pred             HHHHHHcCCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHhcc
Confidence             38889999999976666 799999999999 999999999998753

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=99.46  E-value=1.9e-13  Score=112.61  Aligned_cols=77  Identities=18%  Similarity=0.279  Sum_probs=66.9

Q ss_pred             cCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC---CcEEEEEeCCCch---------------------hHHHHHHHcC
Q 018973          137 AKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN---DVEFILVMGDESE---------------------KTKELCEREK  192 (348)
Q Consensus       137 ~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~---~v~f~~vd~d~~~---------------------~~~~l~~~~~  192 (348)
                      .++++|||+||++||++|+.+.|.|.+++++++   ++.++.|++|+..                     ...+++++|+
T Consensus        26 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  105 (146)
T 1o8x_A           26 LAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFN  105 (146)
T ss_dssp             GTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTT
T ss_pred             hCCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHHHHHhC
Confidence            368999999999999999999999999999987   5899999988642                     2467999999


Q ss_pred             cCCCCeEEEee--cccccccccc
Q 018973          193 IKKVPHFSFYK--SMEKIHEEEG  213 (348)
Q Consensus       193 V~~~Pt~~~~~--~g~~v~~~~G  213 (348)
                      |.++||++++.  +|+.+.+..+
T Consensus       106 v~~~Pt~~lid~~~G~i~~~~~~  128 (146)
T 1o8x_A          106 VESIPTLIGVDADSGDVVTTRAR  128 (146)
T ss_dssp             CCSSSEEEEEETTTCCEEESCHH
T ss_pred             CCCCCEEEEEECCCCeEEEecch
Confidence            99999999886  8988877655

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=99.45  E-value=9.6e-15  Score=114.75  Aligned_cols=65  Identities=8%  Similarity=0.075  Sum_probs=51.1

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCc-hhHHHHHHHcCcCCCCeEEEeecccc
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDES-EKTKELCEREKIKKVPHFSFYKSMEK  207 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~-~~~~~l~~~~~V~~~Pt~~~~~~g~~  207 (348)
                      .++++||+|||+||++|+.+.|.|++++++++   ++.+|.+.. ++..+++++|+|+++||+++  +|+.
T Consensus        11 ~~k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~---~v~~~~~~~~~~~~~l~~~~~V~~~PT~~i--~G~~   76 (106)
T 3kp8_A           11 LRQIGGTMYGAYWCPHCQDQKELFGAAFDQVP---YVECSPNGPGTPQAQECTEAGITSYPTWII--NGRT   76 (106)
T ss_dssp             HHHHTCEEEECTTCHHHHHHHHHHGGGGGGSC---EEESCTTCTTSCCCHHHHHTTCCSSSEEEE--TTEE
T ss_pred             cCCCEEEEEECCCCHHHHHHHHHHHHHHHhCC---EEEEecccccchhHHHHHHcCCeEeCEEEE--CCEE
Confidence            46788999999999999999999999998875   333333221 12457999999999999877  7763

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=99.45  E-value=5.1e-13  Score=107.51  Aligned_cols=90  Identities=18%  Similarity=0.315  Sum_probs=76.0

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCc-------------------------hhHHHHHHhC
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN-------------------------DSCMQFLRDM  306 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~-------------------------~~~~~l~~~~  306 (348)
                      .+++++|+||++||++|+.+.+.+.++.+++++++.++.++.+..                         +...+++++|
T Consensus        21 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  100 (138)
T 4evm_A           21 KGKKVYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLETY  100 (138)
T ss_dssp             TTSEEEEEECCTTCHHHHHHHHHHHHHHHTCTTTEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCHHHHHT
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcchHHHHHc
Confidence            478999999999999999999999999999877899999953210                         0012388999


Q ss_pred             CCCccceEEEE-eCCeEEEEEeCC-ChHHHHHHHHHH
Q 018973          307 NVVEVPTFLFI-RDGQIRGRYVGS-GKGELIGEILRY  341 (348)
Q Consensus       307 ~V~~~PTl~~~-~~G~~v~~~~G~-~~~~L~~~l~~~  341 (348)
                      ++.++|+++++ ++|+++.++.|. +.++|.+.|+++
T Consensus       101 ~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l  137 (138)
T 4evm_A          101 GVRSYPTQAFIDKEGKLVKTHPGFMEKDAILQTLKEL  137 (138)
T ss_dssp             TCCSSSEEEEECTTCCEEEEEESCCCHHHHHHHHHHC
T ss_pred             CcccCCeEEEECCCCcEEEeecCCCcHHHHHHHHHhh
Confidence            99999998888 899999999999 999999998764

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=99.45  E-value=8.8e-13  Score=108.96  Aligned_cols=93  Identities=26%  Similarity=0.368  Sum_probs=79.0

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCc-EEEEEEECCCchhHH-------------------HHHHhCCCCcc
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGT-VVFARMNGDENDSCM-------------------QFLRDMNVVEV  311 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~~~~~~~~-------------------~l~~~~~V~~~  311 (348)
                      .+++++|+||++||++|+.+.+.|.++.++++++ +.++.|+++...+..                   ++++.|+|.++
T Consensus        27 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  106 (152)
T 3gl3_A           27 TGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLYGVKGM  106 (152)
T ss_dssp             TTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHHTTCCSS
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHHcCCCCC
Confidence            4789999999999999999999999999999765 999999998654211                   47788999999


Q ss_pred             ceEEEE-eCCeEEEEEeCC---ChHHHHHHHHHHhCC
Q 018973          312 PTFLFI-RDGQIRGRYVGS---GKGELIGEILRYQGV  344 (348)
Q Consensus       312 PTl~~~-~~G~~v~~~~G~---~~~~L~~~l~~~~~~  344 (348)
                      |+++++ ++|+++.++.|.   +.++|.++|+++++.
T Consensus       107 P~~~lid~~G~i~~~~~g~~~~~~~~l~~~i~~~~~~  143 (152)
T 3gl3_A          107 PTSFLIDRNGKVLLQHVGFRPADKEALEQQILAALGG  143 (152)
T ss_dssp             SEEEEECTTSBEEEEEESCCTTTHHHHHHHHHHHTC-
T ss_pred             CeEEEECCCCCEEEEEccCCCcCHHHHHHHHHHHHcc
Confidence            997666 899999999996   458999999998764

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=99.45  E-value=2.3e-13  Score=111.73  Aligned_cols=76  Identities=24%  Similarity=0.262  Sum_probs=65.9

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC---CcEEEEEeCCCc---------------------hhHHHHHHHcCc
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN---DVEFILVMGDES---------------------EKTKELCEREKI  193 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~---~v~f~~vd~d~~---------------------~~~~~l~~~~~V  193 (348)
                      ++++|||+||++||++|+.+.|.|.+++++++   ++.++.|++|+.                     +...+++++|+|
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  106 (144)
T 1i5g_A           27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDV  106 (144)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccccCchHHHHHHHHHcCC
Confidence            68999999999999999999999999999987   589999998864                     224679999999


Q ss_pred             CCCCeEEEee--cccccccccc
Q 018973          194 KKVPHFSFYK--SMEKIHEEEG  213 (348)
Q Consensus       194 ~~~Pt~~~~~--~g~~v~~~~G  213 (348)
                      .++||++++.  +|+.+.+..+
T Consensus       107 ~~~P~~~lid~~~G~i~~~~~~  128 (144)
T 1i5g_A          107 KSIPTLVGVEADSGNIITTQAR  128 (144)
T ss_dssp             CSSSEEEEEETTTCCEEESCHH
T ss_pred             CCCCEEEEEECCCCcEEeccch
Confidence            9999999885  8988876644

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=99.44  E-value=4e-14  Score=118.27  Aligned_cols=98  Identities=14%  Similarity=0.098  Sum_probs=70.5

Q ss_pred             hhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHH---HHHhCCcEEEEEEECC-CchhHHHHHHhCCCCccceEE
Q 018973          240 EDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKL---SRQMAGTVVFARMNGD-ENDSCMQFLRDMNVVEVPTFL  315 (348)
Q Consensus       240 ~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~l---a~~~~~~v~~~~vd~~-~~~~~~~l~~~~~V~~~PTl~  315 (348)
                      .++++.++.+...+++++|+|||+||++|+.+.|.+.+.   .+...  ..|+.|+++ +..+   ++.++++.++||++
T Consensus        31 ~~~~~al~~A~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~--~~fv~V~vD~e~~~---~~~~~~v~~~PT~~  105 (151)
T 3ph9_A           31 QTYEEGLFYAQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQ--NKFIMLNLMHETTD---KNLSPDGQYVPRIM  105 (151)
T ss_dssp             SSHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHH--HTCEEEEESSCCSC---GGGCTTCCCSSEEE
T ss_pred             hCHHHHHHHHHHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhh--cCeEEEEecCCchh---hHhhcCCCCCCEEE
Confidence            455555555444689999999999999999999988754   22221  235555554 2333   67789999999999


Q ss_pred             EEe-CCeEEEEEeCC-----------ChHHHHHHHHHHh
Q 018973          316 FIR-DGQIRGRYVGS-----------GKGELIGEILRYQ  342 (348)
Q Consensus       316 ~~~-~G~~v~~~~G~-----------~~~~L~~~l~~~~  342 (348)
                      +++ +|+++.++.|.           +.+++++.+++.+
T Consensus       106 f~~~~G~~v~~~~G~~~~~~~~~~~~~~~~ll~~~~~al  144 (151)
T 3ph9_A          106 FVDPSLTVRADIAGRYSNRLYTYEPRDLPLLIENMKKAL  144 (151)
T ss_dssp             EECTTSCBCTTCCCSCTTSTTCCCGGGHHHHHHHHHHHH
T ss_pred             EECCCCCEEEEEeCCcCCcccccchhhHHHHHHHHHHHH
Confidence            997 99999998885           2445666666554

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=99.44  E-value=1.3e-12  Score=108.80  Aligned_cols=93  Identities=18%  Similarity=0.250  Sum_probs=77.7

Q ss_pred             CCcEEEEEEeCCCChhhhh-hhhHHHHHHHHhCCc-EEEEEEECC-------Cchh------------------------
Q 018973          252 DQKLIVLDVGLKHCGPCVK-VYPTVIKLSRQMAGT-VVFARMNGD-------ENDS------------------------  298 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~-~~p~l~~la~~~~~~-v~~~~vd~~-------~~~~------------------------  298 (348)
                      .+++++|+||++||++|+. +.|.|.++.++++++ +.++.|+.+       ..+.                        
T Consensus        29 ~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  108 (160)
T 3lor_A           29 RGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAVDMPREGQR  108 (160)
T ss_dssp             TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCTTCS
T ss_pred             CCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEeccccccccCCHHHHHHHHHHcCCCCcEEECCccccch
Confidence            4789999999999999999 599999999999754 999999873       1111                        


Q ss_pred             HHHHHHhCCCCccceEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHhCC
Q 018973          299 CMQFLRDMNVVEVPTFLFI-RDGQIRGRYVGS-GKGELIGEILRYQGV  344 (348)
Q Consensus       299 ~~~l~~~~~V~~~PTl~~~-~~G~~v~~~~G~-~~~~L~~~l~~~~~~  344 (348)
                      ...++++|+|.++|+++++ ++|+++.++.|. +.++|.+.|+++++.
T Consensus       109 ~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~  156 (160)
T 3lor_A          109 IPSTMKKYRLEGTPSIILADRKGRIRQVQFGQVDDFVLGLLLGSLLSE  156 (160)
T ss_dssp             SCHHHHHTTCCSSSEEEEECTTSBEEEEEESCCCHHHHHHHHHHHHTC
T ss_pred             hhhHHHhcccCccceEEEECCCCcEEEEecCcCCHHHHHHHHHHHHhc
Confidence            1117889999999987777 699999999999 999999999998754

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=99.43  E-value=3e-13  Score=110.84  Aligned_cols=76  Identities=20%  Similarity=0.273  Sum_probs=66.1

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC---CcEEEEEeCCCch---------------------hHHHHHHHcCc
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN---DVEFILVMGDESE---------------------KTKELCEREKI  193 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~---~v~f~~vd~d~~~---------------------~~~~l~~~~~V  193 (348)
                      +++++||+||++||++|+.+.|.|.+++++++   ++.++.|++|+..                     ...+++++|+|
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  106 (144)
T 1o73_A           27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGV  106 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTC
T ss_pred             CCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHHHHHcCC
Confidence            68999999999999999999999999999986   5899999988642                     24679999999


Q ss_pred             CCCCeEEEee--cccccccccc
Q 018973          194 KKVPHFSFYK--SMEKIHEEEG  213 (348)
Q Consensus       194 ~~~Pt~~~~~--~g~~v~~~~G  213 (348)
                      .++||++++.  +|+.+.+..+
T Consensus       107 ~~~Pt~~lid~~~G~i~~~~~~  128 (144)
T 1o73_A          107 ESIPTLITINADTGAIIGTQAR  128 (144)
T ss_dssp             CSSSEEEEEETTTCCEEESCHH
T ss_pred             CCCCEEEEEECCCCeEEecchh
Confidence            9999999987  7888876544

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=99.43  E-value=8e-14  Score=109.46  Aligned_cols=75  Identities=13%  Similarity=0.187  Sum_probs=60.3

Q ss_pred             CcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECC----CchhHHHHHHhCCCCccceEEEEeCCeEEEEEeC
Q 018973          253 QKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGD----ENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVG  328 (348)
Q Consensus       253 ~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~----~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G  328 (348)
                      +++++|+||++||++|+.+.|.|.+++++++    ++.++.+    ++.+   ++++|+|.++||+++  +|+.   +.|
T Consensus        12 ~k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~----~v~~~~~~~~~~~~~---l~~~~~V~~~PT~~i--~G~~---~~G   79 (106)
T 3kp8_A           12 RQIGGTMYGAYWCPHCQDQKELFGAAFDQVP----YVECSPNGPGTPQAQ---ECTEAGITSYPTWII--NGRT---YTG   79 (106)
T ss_dssp             HHHTCEEEECTTCHHHHHHHHHHGGGGGGSC----EEESCTTCTTSCCCH---HHHHTTCCSSSEEEE--TTEE---EES
T ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHHHHhCC----EEEEecccccchhHH---HHHHcCCeEeCEEEE--CCEE---ecC
Confidence            5677999999999999999999999987763    3333432    4455   999999999999877  8874   788


Q ss_pred             C-ChHHHHHHHH
Q 018973          329 S-GKGELIGEIL  339 (348)
Q Consensus       329 ~-~~~~L~~~l~  339 (348)
                      . +.++|.+++.
T Consensus        80 ~~~~~~l~~~~~   91 (106)
T 3kp8_A           80 VRSLEALAVASG   91 (106)
T ss_dssp             CCCHHHHHHHHT
T ss_pred             CCCHHHHHHHhC
Confidence            8 8888887764

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.43  E-value=3.8e-13  Score=121.19  Aligned_cols=78  Identities=12%  Similarity=0.089  Sum_probs=65.5

Q ss_pred             HHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHc-----CCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeec
Q 018973          130 FDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQC-----NDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKS  204 (348)
Q Consensus       130 f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~-----~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~  204 (348)
                      ..+.+.+..++.+++.|||+||++|+.+.|.|++++.++     +++.+..||+++   ..+++++|+|+++||+++  +
T Consensus       129 ~~~~~~~~~~~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~---~~~~~~~~~V~~vPt~~i--~  203 (243)
T 2hls_A          129 TKEALKSLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYE---NPDIADKYGVMSVPSIAI--N  203 (243)
T ss_dssp             HHHHHHHCCSCEEEEEEECSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTT---CHHHHHHTTCCSSSEEEE--T
T ss_pred             HHHHHHHcCCCcEEEEEECCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECcc---CHHHHHHcCCeeeCeEEE--C
Confidence            334455556788899999999999999999999999998     679999999998   456999999999999988  7


Q ss_pred             cccccccccC
Q 018973          205 MEKIHEEEGI  214 (348)
Q Consensus       205 g~~v~~~~G~  214 (348)
                      |+.+  +.|.
T Consensus       204 G~~~--~~G~  211 (243)
T 2hls_A          204 GYLV--FVGV  211 (243)
T ss_dssp             TEEE--EESC
T ss_pred             CEEE--EeCC
Confidence            7754  5553

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=99.43  E-value=1e-14  Score=123.50  Aligned_cols=89  Identities=13%  Similarity=0.268  Sum_probs=72.2

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCC--CccceEEEE-eCCeEEEEEeC
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNV--VEVPTFLFI-RDGQIRGRYVG  328 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V--~~~PTl~~~-~~G~~v~~~~G  328 (348)
                      .+++++|+||++||++|+.+.|.|.++++.+..++.|+.||++..++  .++++|++  .++||+++| ++|+++.++.|
T Consensus        45 ~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~~~~~~~v~~d~~~~--~~~~~~~~~~~~~Pt~~~~d~~G~~~~~~~G  122 (164)
T 1sen_A           45 SGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEE--PKDEDFSPDGGYIPRILFLDPSGKVHPEIIN  122 (164)
T ss_dssp             HTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGS--CSCGGGCTTCSCSSEEEEECTTSCBCTTCCC
T ss_pred             cCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhcCCeEEEEEecCCch--HHHHHhcccCCcCCeEEEECCCCCEEEEEeC
Confidence            47999999999999999999999998876654446777888776542  15677888  669999999 79999988888


Q ss_pred             ----------C-ChHHHHHHHHHHh
Q 018973          329 ----------S-GKGELIGEILRYQ  342 (348)
Q Consensus       329 ----------~-~~~~L~~~l~~~~  342 (348)
                                . +.++|.+.|++++
T Consensus       123 ~~~~~~~~~~~~~~~~l~~~l~~~l  147 (164)
T 1sen_A          123 ENGNPSYKYFYVSAEQVVQGMKEAQ  147 (164)
T ss_dssp             TTSCTTSTTCCCSHHHHHHHHHHHH
T ss_pred             CCCccchhcccCCHHHHHHHHHHHH
Confidence                      3 6788888888764

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=99.42  E-value=1.3e-12  Score=108.33  Aligned_cols=91  Identities=15%  Similarity=0.339  Sum_probs=75.1

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCc-EEEEEEECCCchh----------------------HHHHHHhCCC
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGT-VVFARMNGDENDS----------------------CMQFLRDMNV  308 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~~~~~~----------------------~~~l~~~~~V  308 (348)
                      .+++++|+||++||++|+.+.|.+.++.++++++ +.++.|+++...+                      ..+++++|+|
T Consensus        28 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v  107 (152)
T 2lrn_A           28 KGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCI  107 (152)
T ss_dssp             TTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHHhCC
Confidence            4789999999999999999999999999999764 9999999986321                      2458999999


Q ss_pred             CccceEEEE-eCCeEEEEEeCCChHHHHHHHHHHhCC
Q 018973          309 VEVPTFLFI-RDGQIRGRYVGSGKGELIGEILRYQGV  344 (348)
Q Consensus       309 ~~~PTl~~~-~~G~~v~~~~G~~~~~L~~~l~~~~~~  344 (348)
                      .++||++++ ++|+++.++.  +.++|.+.|+++++.
T Consensus       108 ~~~P~~~lid~~G~i~~~~~--~~~~l~~~l~~l~~~  142 (152)
T 2lrn_A          108 VGFPHIILVDPEGKIVAKEL--RGDDLYNTVEKFVNG  142 (152)
T ss_dssp             CSSCEEEEECTTSEEEEECC--CTTHHHHHHHHHHTS
T ss_pred             CcCCeEEEECCCCeEEEeeC--CHHHHHHHHHHHHhh
Confidence            999998777 7999998864  346777777776543

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=99.42  E-value=3.4e-13  Score=110.51  Aligned_cols=77  Identities=14%  Similarity=0.199  Sum_probs=67.2

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCC------------------------chhHHHHHHHcC
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDE------------------------SEKTKELCEREK  192 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~------------------------~~~~~~l~~~~~  192 (348)
                      ++++++|+||++||++|+.+.|.|.++++++++ +.|+.|++|.                        .+...++++.|+
T Consensus        28 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  107 (148)
T 2b5x_A           28 GEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAFE  107 (148)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHHHHTC
T ss_pred             CCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCCcEEEEEEcCCCccccCHHHHHHHHHHcCCCcceEECCchhHHHHhC
Confidence            689999999999999999999999999999987 9999999764                        122346999999


Q ss_pred             cCCCCeEEEe-eccccccccccC
Q 018973          193 IKKVPHFSFY-KSMEKIHEEEGI  214 (348)
Q Consensus       193 V~~~Pt~~~~-~~g~~v~~~~G~  214 (348)
                      |.++||++++ ++|+.+.++.|.
T Consensus       108 v~~~P~~~lid~~G~i~~~~~g~  130 (148)
T 2b5x_A          108 NEYVPAYYVFDKTGQLRHFQAGG  130 (148)
T ss_dssp             CCCSSEEEEECTTCBEEEEEESC
T ss_pred             CCCCCEEEEECCCCcEEEEecCC
Confidence            9999999988 789988877774

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=99.42  E-value=5.1e-13  Score=110.65  Aligned_cols=77  Identities=14%  Similarity=0.135  Sum_probs=65.5

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCch---------------------hHHHHHHHcC--
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESE---------------------KTKELCEREK--  192 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~---------------------~~~~l~~~~~--  192 (348)
                      ++++|||+||++||++|+.+.|.|.+++++|.  ++.|+.|++|+.+                     ...++++.|+  
T Consensus        23 ~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (151)
T 3raz_A           23 KAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGNT  102 (151)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHHHHHHTTTCC
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCChHHHHHHHHHcCCCCceEecCccchHHHHHHhCCc
Confidence            68999999999999999999999999999984  4999999997432                     2356788899  


Q ss_pred             cCCCCeEEEe-eccccccccccC
Q 018973          193 IKKVPHFSFY-KSMEKIHEEEGI  214 (348)
Q Consensus       193 V~~~Pt~~~~-~~g~~v~~~~G~  214 (348)
                      |.++|+++++ ++|+.+.++.|.
T Consensus       103 v~~~P~~~lid~~G~i~~~~~g~  125 (151)
T 3raz_A          103 VGVLPFTVVEAPKCGYRQTITGE  125 (151)
T ss_dssp             SCCSSEEEEEETTTTEEEECCSC
T ss_pred             cCCCCEEEEECCCCcEEEEECCC
Confidence            9999987766 789988888774

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=99.42  E-value=3.1e-13  Score=115.31  Aligned_cols=80  Identities=15%  Similarity=0.164  Sum_probs=65.4

Q ss_pred             hhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhH-H--HHHHHHhCCcEEEEEEECCCchhHHHHHHhC--------C
Q 018973          239 KEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPT-V--IKLSRQMAGTVVFARMNGDENDSCMQFLRDM--------N  307 (348)
Q Consensus       239 ~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~-l--~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~--------~  307 (348)
                      .+.++....    .+++|+|+||++||++|+.|.+. +  .++++.+.+++.+++||.++.++   +.+.|        +
T Consensus        29 ~ea~~~A~~----~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~fv~ikVD~de~~~---l~~~y~~~~q~~~g  101 (173)
T 3ira_A           29 EEAFEKARK----ENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEAFVSIKVDREERPD---IDNIYMTVCQIILG  101 (173)
T ss_dssp             HHHHHHHHH----HTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHHCEEEEEETTTCHH---HHHHHHHHHHHHHS
T ss_pred             HHHHHHHHH----hCCCEEEecccchhHhhccccccccCCHHHHHHHHhcCceeeeCCcccCc---HHHHHHHHHHHHcC
Confidence            455655544    47999999999999999999883 3  56677665579999999999887   67776        9


Q ss_pred             CCccceEEEEe-CCeEEEE
Q 018973          308 VVEVPTFLFIR-DGQIRGR  325 (348)
Q Consensus       308 V~~~PTl~~~~-~G~~v~~  325 (348)
                      +.++||+++++ +|+++..
T Consensus       102 v~g~Pt~v~l~~dG~~v~~  120 (173)
T 3ira_A          102 RGGWPLNIIMTPGKKPFFA  120 (173)
T ss_dssp             CCCSSEEEEECTTSCEEEE
T ss_pred             CCCCcceeeECCCCCceee
Confidence            99999999995 9998876

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=99.41  E-value=2.1e-13  Score=114.19  Aligned_cols=92  Identities=14%  Similarity=0.259  Sum_probs=75.5

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhC-CcEEEEEEECCCc-------------------------hhHHHHHHh
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMA-GTVVFARMNGDEN-------------------------DSCMQFLRD  305 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~~-------------------------~~~~~l~~~  305 (348)
                      .+++++|+||++||++|+.+.|.|.++.++++ ..+.++.|+.+..                         +...+++++
T Consensus        37 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  116 (164)
T 2h30_A           37 KDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYPKLPVVTDNGGTIAQN  116 (164)
T ss_dssp             TTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEECTTCHHHHH
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHhCCCCcceEEEcCchHHHHH
Confidence            57899999999999999999999999998873 3477776664310                         011248999


Q ss_pred             CCCCccceEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973          306 MNVVEVPTFLFI-RDGQIRGRYVGS-GKGELIGEILRYQG  343 (348)
Q Consensus       306 ~~V~~~PTl~~~-~~G~~v~~~~G~-~~~~L~~~l~~~~~  343 (348)
                      |+|.++||++++ ++|+++.++.|. +.++|.++|++++.
T Consensus       117 ~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~~~~  156 (164)
T 2h30_A          117 LNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRNPNA  156 (164)
T ss_dssp             TTCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCTTC
T ss_pred             cCCCccceEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            999999998777 899999999998 99999999998764

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.41  E-value=5.8e-13  Score=107.60  Aligned_cols=74  Identities=15%  Similarity=0.129  Sum_probs=64.9

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCch-------------------hHHHHHHHcCcCCCCe
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESE-------------------KTKELCEREKIKKVPH  198 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~-------------------~~~~l~~~~~V~~~Pt  198 (348)
                      ++++++|+||++||++|+.+.|.|.+++++++++.|+.|++++.+                   ...+++++|+|.++|+
T Consensus        23 ~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~  102 (136)
T 1lu4_A           23 QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQPA  102 (136)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCSSSE
T ss_pred             CCCEEEEEEECCcChhHHHHHHHHHHHHHHCCCcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchhHHHhcCCCCCCE
Confidence            579999999999999999999999999999999999999988721                   1346899999999999


Q ss_pred             EEEe-eccccccccc
Q 018973          199 FSFY-KSMEKIHEEE  212 (348)
Q Consensus       199 ~~~~-~~g~~v~~~~  212 (348)
                      ++++ ++|+.+ ++.
T Consensus       103 ~~lid~~G~i~-~~~  116 (136)
T 1lu4_A          103 FVFYRADGTST-FVN  116 (136)
T ss_dssp             EEEECTTSCEE-EEC
T ss_pred             EEEECCCCcEE-EEE
Confidence            9888 688887 666

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=99.41  E-value=7.8e-13  Score=109.62  Aligned_cols=89  Identities=18%  Similarity=0.363  Sum_probs=76.3

Q ss_pred             cEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECC--Cc----------------------hhHHHHHHhCCCC
Q 018973          254 KLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGD--EN----------------------DSCMQFLRDMNVV  309 (348)
Q Consensus       254 k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~--~~----------------------~~~~~l~~~~~V~  309 (348)
                      ++++|+||++||++|+.+.|.|.++.+++  ++.++.|+++  ..                      +...+++++|+|.
T Consensus        31 k~vll~f~~~~C~~C~~~~~~l~~l~~~~--~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~  108 (154)
T 3ia1_A           31 KPAVIVFWASWCTVCKAEFPGLHRVAEET--GVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFKVL  108 (154)
T ss_dssp             SSEEEEEECTTCHHHHHHHHHHHHHHHHH--CCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSSBC
T ss_pred             CeEEEEEEcccChhHHHHHHHHHHHHHHc--CCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHHHhCCC
Confidence            88999999999999999999999999999  5888999882  11                      1234588999999


Q ss_pred             ccceEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHhCC
Q 018973          310 EVPTFLFI-RDGQIRGRYVGS-GKGELIGEILRYQGV  344 (348)
Q Consensus       310 ~~PTl~~~-~~G~~v~~~~G~-~~~~L~~~l~~~~~~  344 (348)
                      ++|+++++ ++|+++.++.|. +.++|.+.|+++.+.
T Consensus       109 ~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~~~  145 (154)
T 3ia1_A          109 GQPWTFVVDREGKVVALFAGRAGREALLDALLLAGAD  145 (154)
T ss_dssp             SSCEEEEECTTSEEEEEEESBCCHHHHHHHHHHTTCC
T ss_pred             cccEEEEECCCCCEEEEEcCCCCHHHHHHHHHhccCc
Confidence            99986555 899999999999 999999999998654

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=99.41  E-value=4.7e-13  Score=104.92  Aligned_cols=77  Identities=14%  Similarity=0.154  Sum_probs=68.6

Q ss_pred             cEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCC-ChH
Q 018973          254 KLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS-GKG  332 (348)
Q Consensus       254 k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~-~~~  332 (348)
                      .+.++.||++||++|+.+.+.|++++++++  +.|..+|++++++   ++++|+++ +|+++++.+|+.+  ..|. +++
T Consensus        29 m~~vv~y~~~~C~~C~~a~~~L~~l~~e~~--i~~~~vDId~d~~---l~~~ygv~-VP~l~~~~dG~~v--~~g~~~~~  100 (107)
T 2fgx_A           29 PRKLVVYGREGCHLCEEMIASLRVLQKKSW--FELEVINIDGNEH---LTRLYNDR-VPVLFAVNEDKEL--CHYFLDSD  100 (107)
T ss_dssp             CCCEEEEECSSCHHHHHHHHHHHHHHHHSC--CCCEEEETTTCHH---HHHHSTTS-CSEEEETTTTEEE--ECSSCCCH
T ss_pred             ccEEEEEeCCCChhHHHHHHHHHHHHHhcC--CeEEEEECCCCHH---HHHHhCCC-CceEEEEECCEEE--EecCCCHH
Confidence            457999999999999999999999999873  8899999999887   89999997 9999999999987  3576 889


Q ss_pred             HHHHHH
Q 018973          333 ELIGEI  338 (348)
Q Consensus       333 ~L~~~l  338 (348)
                      +|.++|
T Consensus       101 ~L~~~L  106 (107)
T 2fgx_A          101 VIGAYL  106 (107)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998876

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=99.41  E-value=4.4e-13  Score=108.04  Aligned_cols=76  Identities=16%  Similarity=0.160  Sum_probs=65.9

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCc--------------------hhHHHHHHHcCcCCCC
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDES--------------------EKTKELCEREKIKKVP  197 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~--------------------~~~~~l~~~~~V~~~P  197 (348)
                      ++++++|+||++||++|+.+.|.|.++.++++++.|+.|++|+.                    +...+++++|+|.++|
T Consensus        24 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P  103 (136)
T 1zzo_A           24 LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQP  103 (136)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCCSSS
T ss_pred             CCCeEEEEEEcCCChhHHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCcHHHHHcCCCCCc
Confidence            57899999999999999999999999999999999999998652                    1235689999999999


Q ss_pred             eEEEe-eccccccccccC
Q 018973          198 HFSFY-KSMEKIHEEEGI  214 (348)
Q Consensus       198 t~~~~-~~g~~v~~~~G~  214 (348)
                      +++++ ++|+.+ ++.|.
T Consensus       104 ~~~~id~~g~i~-~~~g~  120 (136)
T 1zzo_A          104 AYAFVDPHGNVD-VVRGR  120 (136)
T ss_dssp             EEEEECTTCCEE-EEESC
T ss_pred             eEEEECCCCCEE-EEecC
Confidence            99888 588887 77764

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=99.41  E-value=1e-12  Score=107.67  Aligned_cols=90  Identities=13%  Similarity=0.298  Sum_probs=76.2

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHh-CCc-EEEEEEECCCchh----------------------HHHHHHhCC
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQM-AGT-VVFARMNGDENDS----------------------CMQFLRDMN  307 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~-~~~-v~~~~vd~~~~~~----------------------~~~l~~~~~  307 (348)
                      .+++++|+||++||++|+.+.|.+.++.+++ +++ +.++.|+++...+                      ..+++++|+
T Consensus        32 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  111 (148)
T 3fkf_A           32 RNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQYA  111 (148)
T ss_dssp             TTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTT
T ss_pred             CCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHHhcC
Confidence            4789999999999999999999999999999 654 9999999886431                      124899999


Q ss_pred             CCccceEEEE-eCCeEEEEEeCCChHHHHHHHHHHhC
Q 018973          308 VVEVPTFLFI-RDGQIRGRYVGSGKGELIGEILRYQG  343 (348)
Q Consensus       308 V~~~PTl~~~-~~G~~v~~~~G~~~~~L~~~l~~~~~  343 (348)
                      |.++|+++++ ++|+++.++.  +.++|.+.|++++.
T Consensus       112 v~~~P~~~lid~~G~i~~~~~--~~~~l~~~l~~ll~  146 (148)
T 3fkf_A          112 ILTLPTNILLSPTGKILARDI--QGEALTGKLKELLK  146 (148)
T ss_dssp             CCSSSEEEEECTTSBEEEESC--CHHHHHHHHHHHC-
T ss_pred             CCCcCEEEEECCCCeEEEecC--CHHHHHHHHHHHHc
Confidence            9999998777 7999988766  77889988888764

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.41  E-value=7.4e-13  Score=117.60  Aligned_cols=100  Identities=12%  Similarity=0.162  Sum_probs=83.4

Q ss_pred             CChhhHHHHh-hhcccCCcEEEEEEe-----CCCChhhhhhhhHHHHHHHHh--CCcEEEEEEECCCchhHHHHHHhCCC
Q 018973          237 HSKEDVEKLI-DDHKVDQKLIVLDVG-----LKHCGPCVKVYPTVIKLSRQM--AGTVVFARMNGDENDSCMQFLRDMNV  308 (348)
Q Consensus       237 ~s~~~~~~~l-~~~~~~~k~vvV~F~-----a~wC~~C~~~~p~l~~la~~~--~~~v~~~~vd~~~~~~~~~l~~~~~V  308 (348)
                      ...+++.+.+ .+.   .++++|.||     ++||++|+.+.|.+.++++++  .+++.++++|++++++   ++++|+|
T Consensus         6 ~~~~~l~~~~~~~~---~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~---l~~~~~v   79 (229)
T 2ywm_A            6 DVRMQLKELAQKEF---KEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKE---ETEKYGV   79 (229)
T ss_dssp             HHHHHHHHHHHHHC---CSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECTTTCHH---HHHHTTC
T ss_pred             HHHHHHHHHHHHhc---cCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCcccHH---HHHHcCC
Confidence            3456777777 343   455555555     899999999999999998887  6789999999999887   9999999


Q ss_pred             CccceEEEEeCCeEEEEEeCC-ChHHHHHHHHHHh
Q 018973          309 VEVPTFLFIRDGQIRGRYVGS-GKGELIGEILRYQ  342 (348)
Q Consensus       309 ~~~PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~  342 (348)
                      +++||+++|++|+...++.|. +.+++..++.+.+
T Consensus        80 ~~~Ptl~~~~~~~~~~~~~G~~~~~~l~~~~~~~~  114 (229)
T 2ywm_A           80 DRVPTIVIEGDKDYGIRYIGLPAGLEFTTLINGIF  114 (229)
T ss_dssp             CBSSEEEEESSSCCCEEEESCCCTTHHHHHHHHHH
T ss_pred             CcCcEEEEECCCcccceecCCccHHHHHHHHHHHH
Confidence            999999999988888899998 8888999888764

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=99.40  E-value=4.1e-13  Score=98.12  Aligned_cols=61  Identities=8%  Similarity=0.087  Sum_probs=54.0

Q ss_pred             EEEEEeCCCCHHHHhhhhHHHHHHHHcC-CcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeeccccccc
Q 018973          142 VVVEFAASRSLDSSKIYPFMVDLSRQCN-DVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHE  210 (348)
Q Consensus       142 vvV~F~a~wC~~C~~~~p~l~~la~~~~-~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~~v~~  210 (348)
                      ..|+|||+||++|+.+.|.+++++++++ ++.++.||   .   .+++++|||+++||+++  +|+.+.+
T Consensus         2 ~~v~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~---~---~~~~~~~~v~~~Pt~~~--~G~~~~~   63 (77)
T 1ilo_A            2 MKIQIYGTGCANCQMLEKNAREAVKELGIDAEFEKIK---E---MDQILEAGLTALPGLAV--DGELKIM   63 (77)
T ss_dssp             EEEEEECSSSSTTHHHHHHHHHHHHHTTCCEEEEEEC---S---HHHHHHHTCSSSSCEEE--TTEEEEC
T ss_pred             cEEEEEcCCChhHHHHHHHHHHHHHHcCCceEEEEec---C---HHHHHHCCCCcCCEEEE--CCEEEEc
Confidence            4689999999999999999999999997 48999998   2   35899999999999988  8887765

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=99.40  E-value=1.9e-13  Score=107.16  Aligned_cols=64  Identities=13%  Similarity=0.093  Sum_probs=58.3

Q ss_pred             CEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeeccccc
Q 018973          140 KLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKI  208 (348)
Q Consensus       140 k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~~v  208 (348)
                      .++|++||++||++|+.+.|.|++++++++ +.|.+||+|+++   +++++||++ +|++++|.+|+.+
T Consensus        29 m~~vv~y~~~~C~~C~~a~~~L~~l~~e~~-i~~~~vDId~d~---~l~~~ygv~-VP~l~~~~dG~~v   92 (107)
T 2fgx_A           29 PRKLVVYGREGCHLCEEMIASLRVLQKKSW-FELEVINIDGNE---HLTRLYNDR-VPVLFAVNEDKEL   92 (107)
T ss_dssp             CCCEEEEECSSCHHHHHHHHHHHHHHHHSC-CCCEEEETTTCH---HHHHHSTTS-CSEEEETTTTEEE
T ss_pred             ccEEEEEeCCCChhHHHHHHHHHHHHHhcC-CeEEEEECCCCH---HHHHHhCCC-CceEEEEECCEEE
Confidence            367999999999999999999999999986 999999999844   589999998 9999999999877

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=99.40  E-value=5e-13  Score=113.02  Aligned_cols=76  Identities=20%  Similarity=0.291  Sum_probs=65.3

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC---CcEEEEEeCCCchh---------------------HHHHHHHcCc
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN---DVEFILVMGDESEK---------------------TKELCEREKI  193 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~---~v~f~~vd~d~~~~---------------------~~~l~~~~~V  193 (348)
                      ++++|||+|||+||++|+.+.|.|.+++++|+   ++.|+.|++|+..+                     ..++++.|+|
T Consensus        47 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  126 (165)
T 3s9f_A           47 SGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSV  126 (165)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHHHHHcCC
Confidence            68999999999999999999999999999986   48999999887521                     1689999999


Q ss_pred             CCCCeEEEee-c-ccccccccc
Q 018973          194 KKVPHFSFYK-S-MEKIHEEEG  213 (348)
Q Consensus       194 ~~~Pt~~~~~-~-g~~v~~~~G  213 (348)
                      .++||++++. + |+.+.+..+
T Consensus       127 ~~~Pt~~lid~~~G~iv~~~~~  148 (165)
T 3s9f_A          127 ESIPTLIGLNADTGDTVTTRAR  148 (165)
T ss_dssp             CSSSEEEEEETTTCCEEESCHH
T ss_pred             CCCCEEEEEeCCCCEEEecccH
Confidence            9999998886 4 888876554

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=99.40  E-value=3.5e-13  Score=101.83  Aligned_cols=73  Identities=11%  Similarity=0.051  Sum_probs=63.5

Q ss_pred             EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCC-ChHHHH
Q 018973          257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS-GKGELI  335 (348)
Q Consensus       257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~-~~~~L~  335 (348)
                      ++.||++||++|+.+.|.|.+++.++     +..+|++++++   ++++|+++ +||+++ .+|+.+.   |. ++++|.
T Consensus         3 vv~f~a~~C~~C~~~~~~L~~~~~~~-----~~~vdid~~~~---l~~~~g~~-vPtl~~-~~G~~v~---g~~~~~~L~   69 (87)
T 1ttz_A            3 LTLYQRDDCHLCDQAVEALAQARAGA-----FFSVFIDDDAA---LESAYGLR-VPVLRD-PMGRELD---WPFDAPRLR   69 (87)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHTTCCC-----EEEEECTTCHH---HHHHHTTT-CSEEEC-TTCCEEE---SCCCHHHHH
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHhh-----eEEEECCCCHH---HHHHhCCC-cCeEEE-ECCEEEe---CCCCHHHHH
Confidence            78899999999999999998875442     68899999887   99999998 999998 8999875   76 999999


Q ss_pred             HHHHHHh
Q 018973          336 GEILRYQ  342 (348)
Q Consensus       336 ~~l~~~~  342 (348)
                      ++|.+++
T Consensus        70 ~~l~~~~   76 (87)
T 1ttz_A           70 AWLDAAP   76 (87)
T ss_dssp             HHHHTCC
T ss_pred             HHHHHHH
Confidence            9998654

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=99.39  E-value=9.7e-13  Score=107.84  Aligned_cols=91  Identities=13%  Similarity=0.251  Sum_probs=77.0

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCc-EEEEEEECCCchh-HHH---------------------HHHhCCC
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGT-VVFARMNGDENDS-CMQ---------------------FLRDMNV  308 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~~~~~~-~~~---------------------l~~~~~V  308 (348)
                      .+++++|+||++||++|+.+.|.+.++.++++++ +.++.|+++...+ .++                     +++.|+|
T Consensus        30 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i  109 (148)
T 3hcz_A           30 QAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYDI  109 (148)
T ss_dssp             CCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSSHHHHHHHHHHTCTTSEEEECTTCCCCHHHHHCC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCCHHHHHHHHHHcCCCCceEEeccccchhHHHhcCc
Confidence            4789999999999999999999999999999765 9999999985542 222                     7888999


Q ss_pred             CccceEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHh
Q 018973          309 VEVPTFLFI-RDGQIRGRYVGS-GKGELIGEILRYQ  342 (348)
Q Consensus       309 ~~~PTl~~~-~~G~~v~~~~G~-~~~~L~~~l~~~~  342 (348)
                      .++|+++++ ++|+++.++.|. +.+++.+.+.+.+
T Consensus       110 ~~~P~~~lid~~G~i~~~~~g~~~~~~~l~~l~~~l  145 (148)
T 3hcz_A          110 YATPVLYVLDKNKVIIAKRIGYENLDDFLVQYEKSL  145 (148)
T ss_dssp             CSSCEEEEECTTCBEEEESCCGGGHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCcEEEecCCHHHHHHHHHHHHHHh
Confidence            999998877 799999999998 7777777776654

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=99.39  E-value=1.5e-12  Score=116.96  Aligned_cols=98  Identities=16%  Similarity=0.228  Sum_probs=83.3

Q ss_pred             eeecCChhhHHHHhhhcccCCcEEEEEEeC--CCChhhhhhhhHHHHHHHHhC--CcEEEEEEECCC-----chhHHHHH
Q 018973          233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGL--KHCGPCVKVYPTVIKLSRQMA--GTVVFARMNGDE-----NDSCMQFL  303 (348)
Q Consensus       233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a--~wC~~C~~~~p~l~~la~~~~--~~v~~~~vd~~~-----~~~~~~l~  303 (348)
                      +..+ +.++|++.+.    .+++++|+||+  |||+    +.|.|.++++.+.  +++.|++||+++     +++   ++
T Consensus         7 v~~L-t~~nF~~~i~----~~~~vlV~FyA~~pWCg----l~P~~e~lA~~~~~~~~v~~akVDvd~~g~~~~~~---l~   74 (240)
T 2qc7_A            7 ALPL-DTVTFYKVIP----KSKFVLVKFDTQYPYGE----KQDEFKRLAENSASSDDLLVAEVGISDYGDKLNME---LS   74 (240)
T ss_dssp             CEEC-CTTHHHHHGG----GCSEEEEEECCSSCCSH----HHHHHHHHHHHHTTCTTEEEEEECCCCSSSCCSHH---HH
T ss_pred             ceEC-CHHHHHHHHc----CCCCEEEEEeCCCCCCc----chHHHHHHHHHhcCCCCeEEEEEeCCcccchhhHH---HH
Confidence            3444 4578888775    36899999999  9999    8999999999985  469999999665     555   99


Q ss_pred             HhCCCC--ccceEEEEeCCe--EEEEEeCC-ChHHHHHHHHHHh
Q 018973          304 RDMNVV--EVPTFLFIRDGQ--IRGRYVGS-GKGELIGEILRYQ  342 (348)
Q Consensus       304 ~~~~V~--~~PTl~~~~~G~--~v~~~~G~-~~~~L~~~l~~~~  342 (348)
                      ++|+|.  ++||+++|++|+  ...++.|. +.+.|.++|.++.
T Consensus        75 ~~~~V~~~~~PTl~~f~~G~~~~~~~y~G~~~~~~L~~fi~~~~  118 (240)
T 2qc7_A           75 EKYKLDKESYPVFYLFRDGDFENPVPYTGAVKVGAIQRWLKGQG  118 (240)
T ss_dssp             HHTTCCGGGCSEEEEEETTCSSCCEECCSCSCHHHHHHHHHHTT
T ss_pred             HHcCCCCCCCCEEEEEeCCCcCcceeecCCCCHHHHHHHHHHhc
Confidence            999999  999999999998  46788898 9999999999874

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=99.39  E-value=2.2e-12  Score=107.74  Aligned_cols=92  Identities=20%  Similarity=0.404  Sum_probs=75.6

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhC-CcEEEEEEECCCc----------------hhHHHHHHhCCCCccceE
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMA-GTVVFARMNGDEN----------------DSCMQFLRDMNVVEVPTF  314 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~~----------------~~~~~l~~~~~V~~~PTl  314 (348)
                      .+++++|+||++||++|+.+.+.|.++.++++ .++.++.|+.+..                +...+++++|+|.++|++
T Consensus        40 ~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~  119 (158)
T 3hdc_A           40 RGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRYGANRLPDT  119 (158)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHTTCCSSSEE
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHhCCCCcceE
Confidence            47899999999999999999999999999996 4699999999871                111239999999999985


Q ss_pred             EEE-eCCeEEEEEeCC---ChHHHHHHHHHHhC
Q 018973          315 LFI-RDGQIRGRYVGS---GKGELIGEILRYQG  343 (348)
Q Consensus       315 ~~~-~~G~~v~~~~G~---~~~~L~~~l~~~~~  343 (348)
                      +++ ++|+++.++.|.   +.+++++.+.+..+
T Consensus       120 ~lid~~G~i~~~~~G~~~~~~~~~~~~~~~~~~  152 (158)
T 3hdc_A          120 FIVDRKGIIRQRVTGGIEWDAPKVVSYLKSLEG  152 (158)
T ss_dssp             EEECTTSBEEEEEESCCCTTSHHHHHHHHTTC-
T ss_pred             EEEcCCCCEEEEEeCCCccchHHHHHHHHhhcc
Confidence            555 899999999998   56777777776544

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=99.39  E-value=3.1e-14  Score=138.87  Aligned_cols=105  Identities=21%  Similarity=0.273  Sum_probs=81.3

Q ss_pred             ceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhC---C-----cEEEEEEECCCchhHHHHH
Q 018973          232 AVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMA---G-----TVVFARMNGDENDSCMQFL  303 (348)
Q Consensus       232 ~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~---~-----~v~~~~vd~~~~~~~~~l~  303 (348)
                      .+..+ +.++|++.+...  .+++++|+|||+||++|+.+.|.+.++++++.   +     ++.|+.||++++++   ++
T Consensus        24 ~V~~L-t~~~F~~~l~~~--~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~~~---la   97 (470)
T 3qcp_A           24 SVVDL-SGDDFSRVHRVA--PLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVD---LC   97 (470)
T ss_dssp             TEEEC-SCSCGGGTCTTG--GGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTCHH---HH
T ss_pred             CcEEC-CHHHHHHHHHhC--CCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCCHH---HH
Confidence            34555 457788777643  46899999999999999999999999999996   2     59999999999887   99


Q ss_pred             HhCCCCccceEEEEeCCe--EEEEEeCC-------------ChHHHHHHHHHHh
Q 018973          304 RDMNVVEVPTFLFIRDGQ--IRGRYVGS-------------GKGELIGEILRYQ  342 (348)
Q Consensus       304 ~~~~V~~~PTl~~~~~G~--~v~~~~G~-------------~~~~L~~~l~~~~  342 (348)
                      ++|+|.++||+++|++|+  ...++.|.             +.++|...+++++
T Consensus        98 ~~y~V~~~PTlilf~~gg~~~~~~y~G~r~~e~L~fI~k~l~~~eLe~~~e~Li  151 (470)
T 3qcp_A           98 RKYDINFVPRLFFFYPRDSCRSNEECGTSSLEHVAFENSHLEVDELESEVRRLV  151 (470)
T ss_dssp             HHTTCCSSCEEEEEEESSCCCTTSCCCCCCEEEEECSCTTCCHHHHHHHHHHHH
T ss_pred             HHcCCCccCeEEEEECCCceEEEEeeCCCCHHHHHHHHHhcCHHHHHHHHHHHh
Confidence            999999999999996443  23344442             4456666665543

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=99.39  E-value=9.4e-13  Score=109.18  Aligned_cols=74  Identities=23%  Similarity=0.262  Sum_probs=65.1

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCCCchh----------------------HHHHHHHcCc
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGDESEK----------------------TKELCEREKI  193 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d~~~~----------------------~~~l~~~~~V  193 (348)
                      ++++++|+||++||++|+.+.|.|.++.++|++  +.|+.|++|+..+                      ..++++.|+|
T Consensus        28 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v  107 (152)
T 2lrn_A           28 KGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCI  107 (152)
T ss_dssp             TTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHHhCC
Confidence            589999999999999999999999999999875  9999999986321                      3679999999


Q ss_pred             CCCCeEEEe-ecccccccc
Q 018973          194 KKVPHFSFY-KSMEKIHEE  211 (348)
Q Consensus       194 ~~~Pt~~~~-~~g~~v~~~  211 (348)
                      .++||++++ ++|+.+.++
T Consensus       108 ~~~P~~~lid~~G~i~~~~  126 (152)
T 2lrn_A          108 VGFPHIILVDPEGKIVAKE  126 (152)
T ss_dssp             CSSCEEEEECTTSEEEEEC
T ss_pred             CcCCeEEEECCCCeEEEee
Confidence            999998887 789888765

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.38  E-value=1.9e-12  Score=107.06  Aligned_cols=89  Identities=21%  Similarity=0.345  Sum_probs=76.6

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECC-----------------------CchhHHHHHHhCC
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGD-----------------------ENDSCMQFLRDMN  307 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~-----------------------~~~~~~~l~~~~~  307 (348)
                      .+++++|+||++||++|+.+.+.+.++.+++++ ++.++.|+.+                       ...   ++++.|+
T Consensus        27 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~  103 (153)
T 2l5o_A           27 QGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADK---AVGQAFG  103 (153)
T ss_dssp             TTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSC---HHHHHHT
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchH---HHHHHcC
Confidence            478999999999999999999999999999875 3888887743                       222   3888999


Q ss_pred             CCccceEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973          308 VVEVPTFLFI-RDGQIRGRYVGS-GKGELIGEILRYQG  343 (348)
Q Consensus       308 V~~~PTl~~~-~~G~~v~~~~G~-~~~~L~~~l~~~~~  343 (348)
                      |.++|+++++ ++|+++.++.|. +.++|.++|++++.
T Consensus       104 i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~  141 (153)
T 2l5o_A          104 TQVYPTSVLIGKKGEILKTYVGEPDFGKLYQEIDTAWR  141 (153)
T ss_dssp             CCSSSEEEEECSSSCCCEEEESSCCHHHHHHHHHHHHH
T ss_pred             CCccCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            9999998777 799999999998 99999999998864

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=99.37  E-value=7e-13  Score=110.80  Aligned_cols=81  Identities=19%  Similarity=0.145  Sum_probs=68.7

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCc----------------hhHHHHHHHcCcCCCCeE
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDES----------------EKTKELCEREKIKKVPHF  199 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~----------------~~~~~l~~~~~V~~~Pt~  199 (348)
                      +++++||+||++||++|+.+.|.|.+++++++  ++.|+.|+.|+.                +...++++.|+|.++|++
T Consensus        40 ~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~  119 (158)
T 3hdc_A           40 RGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRYGANRLPDT  119 (158)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHTTCCSSSEE
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHhCCCCcceE
Confidence            68999999999999999999999999999997  599999998861                223469999999999995


Q ss_pred             EEe-eccccccccccCCCCc
Q 018973          200 SFY-KSMEKIHEEEGIGPDQ  218 (348)
Q Consensus       200 ~~~-~~g~~v~~~~G~~~~~  218 (348)
                      +++ ++|+.+.++.|.....
T Consensus       120 ~lid~~G~i~~~~~G~~~~~  139 (158)
T 3hdc_A          120 FIVDRKGIIRQRVTGGIEWD  139 (158)
T ss_dssp             EEECTTSBEEEEEESCCCTT
T ss_pred             EEEcCCCCEEEEEeCCCccc
Confidence            555 7999999988865433

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=99.37  E-value=2.8e-12  Score=106.14  Aligned_cols=92  Identities=22%  Similarity=0.378  Sum_probs=75.9

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCch-h-H------------------HHHHHhCCCCc
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDEND-S-C------------------MQFLRDMNVVE  310 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~-~-~------------------~~l~~~~~V~~  310 (348)
                      .+++++|+||++||++|+.+.+.+.++.+++++ ++.++.|+.+... + .                  ..+++.|++.+
T Consensus        27 ~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  106 (154)
T 3kcm_A           27 KGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTTG  106 (154)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHHHHTCCS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHHHhCCCC
Confidence            478999999999999999999999999999976 5999999998751 1 1                  12788899999


Q ss_pred             cce-EEEEeCCeEEEEEeCC---ChHHHHHHHHHHhC
Q 018973          311 VPT-FLFIRDGQIRGRYVGS---GKGELIGEILRYQG  343 (348)
Q Consensus       311 ~PT-l~~~~~G~~v~~~~G~---~~~~L~~~l~~~~~  343 (348)
                      +|+ +++.++|+++.++.|.   +.+++.+.|+++.+
T Consensus       107 ~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~l~~  143 (154)
T 3kcm_A          107 VPETFVIDRHGVILKKVVGAMEWDHPEVIAFLNNELS  143 (154)
T ss_dssp             BCEEEEECTTSBEEEEEESCCCTTSHHHHHHHHTC--
T ss_pred             CCeEEEECCCCcEEEEEcCCCccccHHHHHHHHHHHH
Confidence            995 5555899999999997   56789999887654

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=99.37  E-value=2.3e-12  Score=110.30  Aligned_cols=92  Identities=11%  Similarity=0.269  Sum_probs=75.6

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCc-E------EEEEEECCC-ch-hHHHHHHhC----------------
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGT-V------VFARMNGDE-ND-SCMQFLRDM----------------  306 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~-v------~~~~vd~~~-~~-~~~~l~~~~----------------  306 (348)
                      .+++++|+||++||++|+.+.|.|.++.++++++ +      .|+.|+.+. .. ..+++++++                
T Consensus        58 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  137 (183)
T 3lwa_A           58 ENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIYDPPFMTAA  137 (183)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSCCCHHHHHHHHHHTTCCSCEEECTTCGGGG
T ss_pred             CCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCCCCHHHHHHHHHHcCCCccEEECCcchHHH
Confidence            5799999999999999999999999999998654 7      999999987 33 344454443                


Q ss_pred             -----CCCccce-EEEEeCCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973          307 -----NVVEVPT-FLFIRDGQIRGRYVGS-GKGELIGEILRYQG  343 (348)
Q Consensus       307 -----~V~~~PT-l~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~  343 (348)
                           ++..+|+ +++.++|+++.++.|. +.++|.+.|++++.
T Consensus       138 ~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~  181 (183)
T 3lwa_A          138 SLGGVPASVIPTTIVLDKQHRPAAVFLREVTSKDVLDVALPLVD  181 (183)
T ss_dssp             GTTTCCTTCCSEEEEECTTSCEEEEECSCCCHHHHHHHHHHHHH
T ss_pred             HhccCCCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHh
Confidence                 5688995 5666899999999999 99999999998753

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=99.37  E-value=1e-12  Score=110.68  Aligned_cols=88  Identities=27%  Similarity=0.287  Sum_probs=71.4

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCc--------------------hhHHHHHHhCCCCcc
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN--------------------DSCMQFLRDMNVVEV  311 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~--------------------~~~~~l~~~~~V~~~  311 (348)
                      .+++++|+||++||++|+.+.|.|.++.++   ++.++.|+.+..                    +...+++++|+|.++
T Consensus        50 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~---~v~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  126 (168)
T 2b1k_A           50 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGA  126 (168)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHT---TCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTCHHHHHHTCCSS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHC---CCEEEEEECCCChHHHHHHHHHcCCCCceeeECcchHHHHHcCcccc
Confidence            478999999999999999999999999876   477777774321                    111238889999999


Q ss_pred             c-eEEEEeCCeEEEEEeCC-ChHHHHHHHHHHh
Q 018973          312 P-TFLFIRDGQIRGRYVGS-GKGELIGEILRYQ  342 (348)
Q Consensus       312 P-Tl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~  342 (348)
                      | ++++.++|+++.++.|. +.+++.+.|++++
T Consensus       127 P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l  159 (168)
T 2b1k_A          127 PETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLW  159 (168)
T ss_dssp             SEEEEECTTSBEEEEEESCCCHHHHHHTTHHHH
T ss_pred             CEEEEECCCCeEEEEEeCCCCHHHHHHHHHHHH
Confidence            9 56666899999999998 8888888887764

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=99.37  E-value=1e-12  Score=107.23  Aligned_cols=77  Identities=18%  Similarity=0.158  Sum_probs=66.6

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCc----------------------hhHHHHHHHcCc
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDES----------------------EKTKELCEREKI  193 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~----------------------~~~~~l~~~~~V  193 (348)
                      +++++||+||++||++|+.+.|.|.+++++++  ++.|+.|++|..                      +...++++.|+|
T Consensus        33 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  112 (145)
T 3erw_A           33 KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKEYHI  112 (145)
T ss_dssp             TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHHTTC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHhcCc
Confidence            58999999999999999999999999999997  599999998641                      013468999999


Q ss_pred             CCCCeEEEe-eccccccccccC
Q 018973          194 KKVPHFSFY-KSMEKIHEEEGI  214 (348)
Q Consensus       194 ~~~Pt~~~~-~~g~~v~~~~G~  214 (348)
                      .++|+++++ ++|+.+..+.|.
T Consensus       113 ~~~P~~~lid~~G~i~~~~~g~  134 (145)
T 3erw_A          113 ITIPTSFLLNEKGEIEKTKIGP  134 (145)
T ss_dssp             CEESEEEEECTTCCEEEEEESC
T ss_pred             CccCeEEEEcCCCcEEEEEcCC
Confidence            999998888 789988888774

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.35  E-value=9.3e-12  Score=106.66  Aligned_cols=94  Identities=19%  Similarity=0.333  Sum_probs=79.1

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhC-CcEEEEEEECCCc--hhHHHHHHhCCCC-------------------
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMA-GTVVFARMNGDEN--DSCMQFLRDMNVV-------------------  309 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~~--~~~~~l~~~~~V~-------------------  309 (348)
                      .+++++|+||++||++|+.+.|.|.++.++++ .++.++.|+.+..  +..+++++++++.                   
T Consensus        59 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  138 (186)
T 1jfu_A           59 RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAI  138 (186)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTT
T ss_pred             CCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCCCCHHHHHHHHHHcCCCCCceEECCcchHHHHhccc
Confidence            47899999999999999999999999999996 4699999998865  3456688888874                   


Q ss_pred             ----ccceEEEE-eCCeEEEEEeCC-C--hHHHHHHHHHHhCCC
Q 018973          310 ----EVPTFLFI-RDGQIRGRYVGS-G--KGELIGEILRYQGVR  345 (348)
Q Consensus       310 ----~~PTl~~~-~~G~~v~~~~G~-~--~~~L~~~l~~~~~~~  345 (348)
                          ++|+++++ ++|+++.++.|. +  .+++.+.|+++++..
T Consensus       139 ~~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~ll~~~  182 (186)
T 1jfu_A          139 GRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAATGKA  182 (186)
T ss_dssp             TCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHHHC--
T ss_pred             cccCCCCEEEEECCCCCEEEEEecCCccCHHHHHHHHHHHhccc
Confidence                89987666 899999999998 4  789999999987654

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=99.35  E-value=2.3e-12  Score=106.36  Aligned_cols=79  Identities=15%  Similarity=0.225  Sum_probs=67.3

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCCCchhH-------------------HHHHHHcCcCCC
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGDESEKT-------------------KELCEREKIKKV  196 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d~~~~~-------------------~~l~~~~~V~~~  196 (348)
                      +++++||+||++||++|+.+.|.|.++++++++  +.|+.|++|...+.                   .++++.|+|.++
T Consensus        27 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  106 (152)
T 3gl3_A           27 TGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLYGVKGM  106 (152)
T ss_dssp             TTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHHTTCCSS
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHHcCCCCC
Confidence            689999999999999999999999999999875  89999999864311                   168889999999


Q ss_pred             CeEEEe-eccccccccccCCC
Q 018973          197 PHFSFY-KSMEKIHEEEGIGP  216 (348)
Q Consensus       197 Pt~~~~-~~g~~v~~~~G~~~  216 (348)
                      |+++++ ++|+.+.++.|...
T Consensus       107 P~~~lid~~G~i~~~~~g~~~  127 (152)
T 3gl3_A          107 PTSFLIDRNGKVLLQHVGFRP  127 (152)
T ss_dssp             SEEEEECTTSBEEEEEESCCT
T ss_pred             CeEEEECCCCCEEEEEccCCC
Confidence            997766 78999988888543

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=99.35  E-value=1.1e-12  Score=109.07  Aligned_cols=77  Identities=18%  Similarity=0.210  Sum_probs=66.1

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCCCchhH-H-------------------HHHHHcCcCC
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGDESEKT-K-------------------ELCEREKIKK  195 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d~~~~~-~-------------------~l~~~~~V~~  195 (348)
                      ++++|||+||++||++|+...|.|.+++++|++  +.++.|++|+..+. +                   ++++.|+|..
T Consensus        34 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~  113 (152)
T 2lrt_A           34 KGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYNVTN  113 (152)
T ss_dssp             GGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHHTCCS
T ss_pred             CCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHHHcCccc
Confidence            479999999999999999999999999999864  99999999874321 0                   2889999999


Q ss_pred             CCeEEEe-eccccccccccC
Q 018973          196 VPHFSFY-KSMEKIHEEEGI  214 (348)
Q Consensus       196 ~Pt~~~~-~~g~~v~~~~G~  214 (348)
                      +|+++++ ++|+.+.++.|.
T Consensus       114 ~P~~~lid~~G~i~~~~~g~  133 (152)
T 2lrt_A          114 LPSVFLVNRNNELSARGENI  133 (152)
T ss_dssp             CSEEEEEETTTEEEEETTTC
T ss_pred             CceEEEECCCCeEEEecCCH
Confidence            9998877 689999888774

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=99.35  E-value=5.4e-13  Score=109.39  Aligned_cols=77  Identities=13%  Similarity=0.075  Sum_probs=65.5

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCCCchh-HHH---------------------HHHHcCc
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGDESEK-TKE---------------------LCEREKI  193 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d~~~~-~~~---------------------l~~~~~V  193 (348)
                      +++++||+||++||++|+.+.|.|.++.++|++  +.|+.|++|+.++ ..+                     +++.|+|
T Consensus        30 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i  109 (148)
T 3hcz_A           30 QAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYDI  109 (148)
T ss_dssp             CCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSSHHHHHHHHHHTCTTSEEEECTTCCCCHHHHHCC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCCHHHHHHHHHHcCCCCceEEeccccchhHHHhcCc
Confidence            689999999999999999999999999999875  9999999986321 111                     8899999


Q ss_pred             CCCCeEEEe-eccccccccccC
Q 018973          194 KKVPHFSFY-KSMEKIHEEEGI  214 (348)
Q Consensus       194 ~~~Pt~~~~-~~g~~v~~~~G~  214 (348)
                      .++|+++++ ++|+.+.++.|.
T Consensus       110 ~~~P~~~lid~~G~i~~~~~g~  131 (148)
T 3hcz_A          110 YATPVLYVLDKNKVIIAKRIGY  131 (148)
T ss_dssp             CSSCEEEEECTTCBEEEESCCG
T ss_pred             CCCCEEEEECCCCcEEEecCCH
Confidence            999998888 789888877663

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=99.35  E-value=1e-12  Score=108.60  Aligned_cols=77  Identities=18%  Similarity=0.269  Sum_probs=66.3

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCCCchh-------------------HHHHHHHcCcCCC
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGDESEK-------------------TKELCEREKIKKV  196 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d~~~~-------------------~~~l~~~~~V~~~  196 (348)
                      +++++||+||++||++|+.+.|.|.++.+++++  +.|+.|++|+.++                   ..++++.|+|.++
T Consensus        25 ~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  104 (151)
T 2f9s_A           25 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPL  104 (151)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTTCCSS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcCCCCC
Confidence            689999999999999999999999999999864  9999999876421                   2368999999999


Q ss_pred             CeEEEe-eccccccccccC
Q 018973          197 PHFSFY-KSMEKIHEEEGI  214 (348)
Q Consensus       197 Pt~~~~-~~g~~v~~~~G~  214 (348)
                      |+++++ ++|+.+..+.|.
T Consensus       105 P~~~lid~~G~i~~~~~G~  123 (151)
T 2f9s_A          105 PTTFLINPEGKVVKVVTGT  123 (151)
T ss_dssp             CEEEEECTTSEEEEEEESC
T ss_pred             CeEEEECCCCcEEEEEeCC
Confidence            998777 789998888774

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=99.35  E-value=4.2e-12  Score=105.62  Aligned_cols=86  Identities=14%  Similarity=0.245  Sum_probs=71.4

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCc-EEEEEEECCCchhH-H-------------------HHHHhCCCCc
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGT-VVFARMNGDENDSC-M-------------------QFLRDMNVVE  310 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~~~~~~~-~-------------------~l~~~~~V~~  310 (348)
                      .+++++|+||++||++|+.+.|.|.++.++++++ +.++.|+.+...+. +                   .++++|++.+
T Consensus        34 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~  113 (152)
T 2lrt_A           34 KGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYNVTN  113 (152)
T ss_dssp             GGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHHTCCS
T ss_pred             CCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHHHcCccc
Confidence            3689999999999999999999999999999765 99999999876531 1                   2788999999


Q ss_pred             cceEEEE-eCCeEEEEEeCC-ChHHHHHH
Q 018973          311 VPTFLFI-RDGQIRGRYVGS-GKGELIGE  337 (348)
Q Consensus       311 ~PTl~~~-~~G~~v~~~~G~-~~~~L~~~  337 (348)
                      +|+++++ ++|+++.++.|. +.++....
T Consensus       114 ~P~~~lid~~G~i~~~~~g~~~~e~~~~~  142 (152)
T 2lrt_A          114 LPSVFLVNRNNELSARGENIKDLDEAIKK  142 (152)
T ss_dssp             CSEEEEEETTTEEEEETTTCSCHHHHHHH
T ss_pred             CceEEEECCCCeEEEecCCHHHHHHHHHH
Confidence            9987666 799999999998 65554433

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=99.34  E-value=3.8e-13  Score=101.64  Aligned_cols=58  Identities=10%  Similarity=0.109  Sum_probs=51.3

Q ss_pred             EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeecccccc
Q 018973          143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIH  209 (348)
Q Consensus       143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~~v~  209 (348)
                      |++||++||++|+.+.|.|++++.++    +.+||+|+++   +++++||++ +||+++ .+|+.+.
T Consensus         3 vv~f~a~~C~~C~~~~~~L~~~~~~~----~~~vdid~~~---~l~~~~g~~-vPtl~~-~~G~~v~   60 (87)
T 1ttz_A            3 LTLYQRDDCHLCDQAVEALAQARAGA----FFSVFIDDDA---ALESAYGLR-VPVLRD-PMGRELD   60 (87)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHTTCCC----EEEEECTTCH---HHHHHHTTT-CSEEEC-TTCCEEE
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHhh----eEEEECCCCH---HHHHHhCCC-cCeEEE-ECCEEEe
Confidence            78999999999999999999987665    6899999944   599999999 999998 8888774

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=99.34  E-value=2.1e-12  Score=106.59  Aligned_cols=77  Identities=16%  Similarity=0.258  Sum_probs=66.7

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCCCchh--------------------HHHHHHHcCcCC
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGDESEK--------------------TKELCEREKIKK  195 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d~~~~--------------------~~~l~~~~~V~~  195 (348)
                      ++++++|+||++||++|+.+.|.|.++.+++++  +.|+.|++|...+                    ..++++.|+|.+
T Consensus        29 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  108 (152)
T 2lja_A           29 KGKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLING  108 (152)
T ss_dssp             TTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTTCCS
T ss_pred             CCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcCcCC
Confidence            589999999999999999999999999999975  8999999887431                    126899999999


Q ss_pred             CCeEEEee-ccccccccccC
Q 018973          196 VPHFSFYK-SMEKIHEEEGI  214 (348)
Q Consensus       196 ~Pt~~~~~-~g~~v~~~~G~  214 (348)
                      +|+++++. +|+.+.++.|.
T Consensus       109 ~P~~~lid~~G~i~~~~~g~  128 (152)
T 2lja_A          109 IPRFILLDRDGKIISANMTR  128 (152)
T ss_dssp             SCCEEEECTTSCEEESSCCC
T ss_pred             CCEEEEECCCCeEEEccCCC
Confidence            99998886 89988877763

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=99.34  E-value=2.1e-12  Score=103.92  Aligned_cols=77  Identities=19%  Similarity=0.248  Sum_probs=64.3

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCC-------------------------chhHHHHHHHc
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDE-------------------------SEKTKELCERE  191 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~-------------------------~~~~~~l~~~~  191 (348)
                      +++++||+||++||++|+.+.|.|.++.+++++ +.++.|+.+.                         .+...++++.|
T Consensus        21 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  100 (138)
T 4evm_A           21 KGKKVYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLETY  100 (138)
T ss_dssp             TTSEEEEEECCTTCHHHHHHHHHHHHHHHTCTTTEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCHHHHHT
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcchHHHHHc
Confidence            689999999999999999999999999999874 8999995321                         01134689999


Q ss_pred             CcCCCCeEEEe-eccccccccccC
Q 018973          192 KIKKVPHFSFY-KSMEKIHEEEGI  214 (348)
Q Consensus       192 ~V~~~Pt~~~~-~~g~~v~~~~G~  214 (348)
                      +|.++|+++++ ++|+.+.++.|.
T Consensus       101 ~v~~~P~~~lid~~G~i~~~~~g~  124 (138)
T 4evm_A          101 GVRSYPTQAFIDKEGKLVKTHPGF  124 (138)
T ss_dssp             TCCSSSEEEEECTTCCEEEEEESC
T ss_pred             CcccCCeEEEECCCCcEEEeecCC
Confidence            99999999888 789988877773

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=99.33  E-value=1.7e-12  Score=106.35  Aligned_cols=75  Identities=12%  Similarity=0.173  Sum_probs=64.4

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHc-CC--cEEEEEeCCCchh----------------------HHHHHHHcC
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQC-ND--VEFILVMGDESEK----------------------TKELCEREK  192 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~-~~--v~f~~vd~d~~~~----------------------~~~l~~~~~  192 (348)
                      +++++||+||++||++|+.+.|.|.+++++| ++  +.|+.|++|...+                      ..++++.|+
T Consensus        32 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  111 (148)
T 3fkf_A           32 RNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQYA  111 (148)
T ss_dssp             TTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTT
T ss_pred             CCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHHhcC
Confidence            6899999999999999999999999999999 54  8999999886431                      247899999


Q ss_pred             cCCCCeEEEe-eccccccccc
Q 018973          193 IKKVPHFSFY-KSMEKIHEEE  212 (348)
Q Consensus       193 V~~~Pt~~~~-~~g~~v~~~~  212 (348)
                      |.++|+++++ ++|+.+.+..
T Consensus       112 v~~~P~~~lid~~G~i~~~~~  132 (148)
T 3fkf_A          112 ILTLPTNILLSPTGKILARDI  132 (148)
T ss_dssp             CCSSSEEEEECTTSBEEEESC
T ss_pred             CCCcCEEEEECCCCeEEEecC
Confidence            9999998888 6888776543

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.33  E-value=2.6e-12  Score=106.41  Aligned_cols=89  Identities=21%  Similarity=0.317  Sum_probs=73.1

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchh--------------------HHHHHHhCCCCcc
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDS--------------------CMQFLRDMNVVEV  311 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~--------------------~~~l~~~~~V~~~  311 (348)
                      .+++++|+||++||++|+.+.|.|.++.++  +++.++.|+.+...+                    ..+++++|++.++
T Consensus        41 ~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~--~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  118 (156)
T 1kng_A           41 KGKVSLVNVWASWCVPCHDEAPLLTELGKD--KRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGV  118 (156)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHTTC--TTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSS
T ss_pred             CCCEEEEEEEcccCHhHHHHHHHHHHHHhc--CCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHHHhcCcCcc
Confidence            478999999999999999999999998876  458888888654221                    1237888999999


Q ss_pred             ce-EEEEeCCeEEEEEeCC-ChHHHHHHHHHHh
Q 018973          312 PT-FLFIRDGQIRGRYVGS-GKGELIGEILRYQ  342 (348)
Q Consensus       312 PT-l~~~~~G~~v~~~~G~-~~~~L~~~l~~~~  342 (348)
                      |+ +++.++|+++.++.|. +.++|.+.|++++
T Consensus       119 P~~~~id~~G~i~~~~~g~~~~~~l~~~l~~~l  151 (156)
T 1kng_A          119 PETFVVGREGTIVYKLVGPITPDNLRSVLLPQM  151 (156)
T ss_dssp             CEEEEECTTSBEEEEEESCCCHHHHHHTHHHHH
T ss_pred             CeEEEEcCCCCEEEEEeCCCCHHHHHHHHHHHH
Confidence            95 5555899999999999 8889998888765

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=99.33  E-value=6.3e-12  Score=102.90  Aligned_cols=86  Identities=9%  Similarity=0.135  Sum_probs=70.1

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHH---HHHHhC-CcEEEEEEECCCchhH---------------------HHHHHhC
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIK---LSRQMA-GTVVFARMNGDENDSC---------------------MQFLRDM  306 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~---la~~~~-~~v~~~~vd~~~~~~~---------------------~~l~~~~  306 (348)
                      .+++++|+||++||++|+.+.|.+.+   +.++++ .++.++.|+.+...+.                     ..+.+.|
T Consensus        30 ~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  109 (142)
T 3eur_A           30 PAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLY  109 (142)
T ss_dssp             CCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTCS
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhhhhhhc
Confidence            47999999999999999999999999   888884 4599999999876431                     1146789


Q ss_pred             CCCccceEEEE-eCCeEEEEEeCCChHHHHHHHH
Q 018973          307 NVVEVPTFLFI-RDGQIRGRYVGSGKGELIGEIL  339 (348)
Q Consensus       307 ~V~~~PTl~~~-~~G~~v~~~~G~~~~~L~~~l~  339 (348)
                      +|.++||++++ ++|+++.+..|  .++|.++|+
T Consensus       110 ~v~~~P~~~lid~~G~i~~~~~~--~~~l~~~l~  141 (142)
T 3eur_A          110 DLRAIPTLYLLDKNKTVLLKDAT--LQKVEQYLA  141 (142)
T ss_dssp             CCTTCSEEEEECTTCBEEEEEEC--HHHHHHHHH
T ss_pred             CCCcCCeEEEECCCCcEEecCCC--HHHHHHHHh
Confidence            99999987666 79999988765  577777765

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=99.33  E-value=8.9e-12  Score=104.58  Aligned_cols=90  Identities=14%  Similarity=0.205  Sum_probs=73.8

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECC------------------Cchh-H-------------
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGD------------------ENDS-C-------------  299 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~------------------~~~~-~-------------  299 (348)
                      .+++++|+||++||++|+.+.|.|.++.++++ ++.|+.|+++                  +..+ .             
T Consensus        36 ~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~-~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (165)
T 3ha9_A           36 GGDVVILWFMAAWCPSCVYMADLLDRLTEKYR-EISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWI  114 (165)
T ss_dssp             CSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT-TEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHHSCTTSE
T ss_pred             CCCEEEEEEECCCCcchhhhHHHHHHHHHHcC-CcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHHcCCCCee
Confidence            47999999999999999999999999999998 7999999998                  3321 0             


Q ss_pred             -----HHHHHhCCCCccceEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973          300 -----MQFLRDMNVVEVPTFLFI-RDGQIRGRYVGS-GKGELIGEILRYQG  343 (348)
Q Consensus       300 -----~~l~~~~~V~~~PTl~~~-~~G~~v~~~~G~-~~~~L~~~l~~~~~  343 (348)
                           .++++.|+|.++||++++ ++|+++. .... +.++|.+.|+++++
T Consensus       115 ~~~d~~~~~~~~~v~~~P~~~lid~~G~i~~-~g~~~~~~~l~~~l~~l~~  164 (165)
T 3ha9_A          115 MVMDDGSLVEKFNVRSIDYIVIMDKSSNVLY-AGTTPSLGELESVIKSVQG  164 (165)
T ss_dssp             EEECCSHHHHHTTCCSSSEEEEEETTCCEEE-EEESCCHHHHHHHHHHC--
T ss_pred             EEeChHHHHHHhCCCCceEEEEEcCCCcEEE-eCCCCCHHHHHHHHHHHhc
Confidence                 148888999999987777 7999988 3334 78999999988764

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=99.33  E-value=2.1e-12  Score=105.90  Aligned_cols=74  Identities=14%  Similarity=0.109  Sum_probs=62.1

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCCCchh-----------------------HHHHHHHcC
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGDESEK-----------------------TKELCEREK  192 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d~~~~-----------------------~~~l~~~~~  192 (348)
                      ++++|||+|||+||++|+...|.|.+++++|++  +.|+.|+.|...+                       ..++++.|+
T Consensus        31 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  110 (143)
T 4fo5_A           31 LGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKKYD  110 (143)
T ss_dssp             SCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGSHHHHHTT
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccchHHHHHcC
Confidence            689999999999999999999999999999964  9999999885421                       136888999


Q ss_pred             cCCCCeEEEee-cccccccc
Q 018973          193 IKKVPHFSFYK-SMEKIHEE  211 (348)
Q Consensus       193 V~~~Pt~~~~~-~g~~v~~~  211 (348)
                      |..+|+.+++. +|+.+.+.
T Consensus       111 v~~~P~~~lid~~G~i~~~~  130 (143)
T 4fo5_A          111 LRKGFKNFLINDEGVIIAAN  130 (143)
T ss_dssp             GGGCCCEEEECTTSBEEEES
T ss_pred             CCCCCcEEEECCCCEEEEcc
Confidence            99999876664 78877654

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=99.33  E-value=2e-12  Score=107.74  Aligned_cols=77  Identities=17%  Similarity=0.180  Sum_probs=63.7

Q ss_pred             CCCEEEEEEeCCCCHHHHh-hhhHHHHHHHHcCC--cEEEEEeCC-------Cch------------------hHHH---
Q 018973          138 KNKLVVVEFAASRSLDSSK-IYPFMVDLSRQCND--VEFILVMGD-------ESE------------------KTKE---  186 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~-~~p~l~~la~~~~~--v~f~~vd~d-------~~~------------------~~~~---  186 (348)
                      ++++|||+||++||++|+. +.|.|.+++++|++  +.|+.|+++       ..+                  ....   
T Consensus        29 ~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  108 (160)
T 3lor_A           29 RGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAVDMPREGQR  108 (160)
T ss_dssp             TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCTTCS
T ss_pred             CCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEeccccccccCCHHHHHHHHHHcCCCCcEEECCccccch
Confidence            6899999999999999999 69999999999975  999999873       110                  0112   


Q ss_pred             ---HHHHcCcCCCCeEEEe-eccccccccccC
Q 018973          187 ---LCEREKIKKVPHFSFY-KSMEKIHEEEGI  214 (348)
Q Consensus       187 ---l~~~~~V~~~Pt~~~~-~~g~~v~~~~G~  214 (348)
                         +++.|+|.++|+++++ ++|+.+.++.|.
T Consensus       109 ~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~  140 (160)
T 3lor_A          109 IPSTMKKYRLEGTPSIILADRKGRIRQVQFGQ  140 (160)
T ss_dssp             SCHHHHHTTCCSSSEEEEECTTSBEEEEEESC
T ss_pred             hhhHHHhcccCccceEEEECCCCcEEEEecCc
Confidence               8899999999998777 589998887774

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=99.33  E-value=1.8e-12  Score=106.23  Aligned_cols=76  Identities=5%  Similarity=0.085  Sum_probs=61.8

Q ss_pred             cCCCEEEEEEeCCCCHHHHhhhhHHHH---HHHHcC--CcEEEEEeCCCchhH---------------------HHHHHH
Q 018973          137 AKNKLVVVEFAASRSLDSSKIYPFMVD---LSRQCN--DVEFILVMGDESEKT---------------------KELCER  190 (348)
Q Consensus       137 ~~~k~vvV~F~a~wC~~C~~~~p~l~~---la~~~~--~v~f~~vd~d~~~~~---------------------~~l~~~  190 (348)
                      .++++|||+|||+||++|+...|.|.+   +.+++.  ++.++.|+.|+..+.                     ..+++.
T Consensus        29 ~~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  108 (142)
T 3eur_A           29 FPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNL  108 (142)
T ss_dssp             CCCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTC
T ss_pred             cCCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhhhhhh
Confidence            368999999999999999999999999   998884  599999999875321                     125788


Q ss_pred             cCcCCCCeEEEe-eccccccccc
Q 018973          191 EKIKKVPHFSFY-KSMEKIHEEE  212 (348)
Q Consensus       191 ~~V~~~Pt~~~~-~~g~~v~~~~  212 (348)
                      |+|.++||++++ ++|+.+.+..
T Consensus       109 ~~v~~~P~~~lid~~G~i~~~~~  131 (142)
T 3eur_A          109 YDLRAIPTLYLLDKNKTVLLKDA  131 (142)
T ss_dssp             SCCTTCSEEEEECTTCBEEEEEE
T ss_pred             cCCCcCCeEEEECCCCcEEecCC
Confidence            999999997777 5787776543

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=99.32  E-value=3.1e-12  Score=106.97  Aligned_cols=74  Identities=19%  Similarity=0.134  Sum_probs=62.8

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCCCchhHHHHHHHc------------------------
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGDESEKTKELCERE------------------------  191 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d~~~~~~~l~~~~------------------------  191 (348)
                      +++++||+||++||++|+.+.|.|.+++++|++  +.|+.|++|+..   +.+++|                        
T Consensus        33 ~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (165)
T 3or5_A           33 KGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQL---PNVKNYMKTQGIIYPVMMATPELIRAFNGY  109 (165)
T ss_dssp             TTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCCH---HHHHHHHHHHTCCSCEEECCHHHHHHHHTT
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCH---HHHHHHHHHcCCCCceEecCHHHHHHHhhh
Confidence            689999999999999999999999999999975  899999998743   233333                        


Q ss_pred             ---CcCCCCeEEEe-eccccccccccC
Q 018973          192 ---KIKKVPHFSFY-KSMEKIHEEEGI  214 (348)
Q Consensus       192 ---~V~~~Pt~~~~-~~g~~v~~~~G~  214 (348)
                         +|.++|+++++ ++|+.+.++.|.
T Consensus       110 ~~~~i~~~P~~~lid~~G~i~~~~~g~  136 (165)
T 3or5_A          110 IDGGITGIPTSFVIDASGNVSGVIVGP  136 (165)
T ss_dssp             STTCSCSSSEEEEECTTSBEEEEECSC
T ss_pred             hccCCCCCCeEEEECCCCcEEEEEcCC
Confidence               89999997777 789998888774

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=99.32  E-value=1.2e-12  Score=108.48  Aligned_cols=75  Identities=17%  Similarity=0.225  Sum_probs=64.6

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCC--Cc----------------------hhHHHHHHHcCc
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGD--ES----------------------EKTKELCEREKI  193 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d--~~----------------------~~~~~l~~~~~V  193 (348)
                      + +++||+||++||++|+.+.|.|.++++++ ++.|+.|++|  +.                      +...++++.|+|
T Consensus        30 ~-k~vll~f~~~~C~~C~~~~~~l~~l~~~~-~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v  107 (154)
T 3ia1_A           30 S-KPAVIVFWASWCTVCKAEFPGLHRVAEET-GVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFKV  107 (154)
T ss_dssp             C-SSEEEEEECTTCHHHHHHHHHHHHHHHHH-CCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSSB
T ss_pred             C-CeEEEEEEcccChhHHHHHHHHHHHHHHc-CCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHHHhCC
Confidence            5 89999999999999999999999999999 9999999992  11                      125679999999


Q ss_pred             CCCCeEEEe-eccccccccccC
Q 018973          194 KKVPHFSFY-KSMEKIHEEEGI  214 (348)
Q Consensus       194 ~~~Pt~~~~-~~g~~v~~~~G~  214 (348)
                      .++|+++++ ++|+.+..+.|.
T Consensus       108 ~~~P~~~lid~~G~i~~~~~g~  129 (154)
T 3ia1_A          108 LGQPWTFVVDREGKVVALFAGR  129 (154)
T ss_dssp             CSSCEEEEECTTSEEEEEEESB
T ss_pred             CcccEEEEECCCCCEEEEEcCC
Confidence            999996666 789999888774

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=99.32  E-value=1.3e-11  Score=102.06  Aligned_cols=89  Identities=11%  Similarity=0.198  Sum_probs=74.4

Q ss_pred             CCcEEEEEEeCCCChh--hhhhhhHHHHHHHHh-CCc-EEEEEEECCCchh----------------------HHHHHHh
Q 018973          252 DQKLIVLDVGLKHCGP--CVKVYPTVIKLSRQM-AGT-VVFARMNGDENDS----------------------CMQFLRD  305 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~--C~~~~p~l~~la~~~-~~~-v~~~~vd~~~~~~----------------------~~~l~~~  305 (348)
                      .+++++|+||++||++  |+.+.|.|.++.+++ +++ +.++.|+.+..++                      ..++++.
T Consensus        32 ~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  111 (150)
T 3fw2_A           32 KQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQ  111 (150)
T ss_dssp             TTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHH
T ss_pred             CCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHHHHH
Confidence            4789999999999999  999999999999999 654 9999999987641                      1248889


Q ss_pred             CCCCccceEEEE-eCCeEEEEEeCCChHHHHHHHHHHh
Q 018973          306 MNVVEVPTFLFI-RDGQIRGRYVGSGKGELIGEILRYQ  342 (348)
Q Consensus       306 ~~V~~~PTl~~~-~~G~~v~~~~G~~~~~L~~~l~~~~  342 (348)
                      |+|.++|+++++ ++|+++.++.  +.++|.+.|++++
T Consensus       112 ~~v~~~P~~~lid~~G~i~~~~~--~~~~l~~~l~~ll  147 (150)
T 3fw2_A          112 YSIYKIPANILLSSDGKILAKNL--RGEELKKKIENIV  147 (150)
T ss_dssp             TTCCSSSEEEEECTTSBEEEESC--CHHHHHHHHHHHH
T ss_pred             cCCCccCeEEEECCCCEEEEccC--CHHHHHHHHHHHH
Confidence            999999987777 7999998865  6677777777664

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=99.32  E-value=1.4e-12  Score=109.07  Aligned_cols=78  Identities=14%  Similarity=0.153  Sum_probs=64.5

Q ss_pred             cCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHc--CCcEEEEEeCCC-------------------------chhHHHHHH
Q 018973          137 AKNKLVVVEFAASRSLDSSKIYPFMVDLSRQC--NDVEFILVMGDE-------------------------SEKTKELCE  189 (348)
Q Consensus       137 ~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~--~~v~f~~vd~d~-------------------------~~~~~~l~~  189 (348)
                      .+++++||+||++||++|+.+.|.|++++++|  .++.|+.|++++                         .+...++++
T Consensus        36 ~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  115 (164)
T 2h30_A           36 KKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYPKLPVVTDNGGTIAQ  115 (164)
T ss_dssp             CTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEECTTCHHHH
T ss_pred             hCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHhCCCCcceEEEcCchHHHH
Confidence            36899999999999999999999999999986  458888777542                         012357999


Q ss_pred             HcCcCCCCeEEEe-eccccccccccC
Q 018973          190 REKIKKVPHFSFY-KSMEKIHEEEGI  214 (348)
Q Consensus       190 ~~~V~~~Pt~~~~-~~g~~v~~~~G~  214 (348)
                      +|+|.++||++++ ++|+.+.++.|.
T Consensus       116 ~~~v~~~P~~~lid~~G~i~~~~~g~  141 (164)
T 2h30_A          116 NLNISVYPSWALIGKDGDVQRIVKGS  141 (164)
T ss_dssp             HTTCCSSSEEEEECTTSCEEEEEESC
T ss_pred             HcCCCccceEEEECCCCcEEEEEcCC
Confidence            9999999999888 789998888773

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=99.32  E-value=2.1e-12  Score=107.44  Aligned_cols=77  Identities=10%  Similarity=0.056  Sum_probs=63.6

Q ss_pred             CCCEEEEEEeCCCCHHHHhh-hhHHHHHHHHcC--CcEEEEEeCCC------c-hh------------------HH----
Q 018973          138 KNKLVVVEFAASRSLDSSKI-YPFMVDLSRQCN--DVEFILVMGDE------S-EK------------------TK----  185 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~-~p~l~~la~~~~--~v~f~~vd~d~------~-~~------------------~~----  185 (348)
                      ++++|||+||++||++|+.. .|.|.+++++|+  ++.|+.|++|.      . +.                  ..    
T Consensus        27 ~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  106 (158)
T 3eyt_A           27 RGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGAM  106 (158)
T ss_dssp             TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCSSSS
T ss_pred             CCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEcCccchhh
Confidence            68999999999999999996 999999999997  49999998741      0 00                  01    


Q ss_pred             -HHHHHcCcCCCCeEEEe-eccccccccccC
Q 018973          186 -ELCEREKIKKVPHFSFY-KSMEKIHEEEGI  214 (348)
Q Consensus       186 -~l~~~~~V~~~Pt~~~~-~~g~~v~~~~G~  214 (348)
                       ++++.|+|.++|+++++ ++|+.+.++.|.
T Consensus       107 ~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~  137 (158)
T 3eyt_A          107 PRTMAAYQMRGTPSLLLIDKAGDLRAHHFGD  137 (158)
T ss_dssp             CHHHHHTTCCSSSEEEEECTTSEEEEEEESC
T ss_pred             HHHHHHcCCCCCCEEEEECCCCCEEEEEeCC
Confidence             58899999999987776 689998888774

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=99.32  E-value=3.3e-12  Score=105.13  Aligned_cols=76  Identities=17%  Similarity=0.318  Sum_probs=65.1

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhC--CcEEEEEEECCCch---------------------hHHHHHHhCCC
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMA--GTVVFARMNGDEND---------------------SCMQFLRDMNV  308 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~--~~v~~~~vd~~~~~---------------------~~~~l~~~~~V  308 (348)
                      .+++++|+||++||++|+.+.|.|.+++++++  .++.++.|+++...                     ...+++++|+|
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  106 (146)
T 1o8x_A           27 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNV  106 (146)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHHHHHhCC
Confidence            47899999999999999999999999999997  46999999988642                     23569999999


Q ss_pred             CccceEEEEe--CCeEEEEEe
Q 018973          309 VEVPTFLFIR--DGQIRGRYV  327 (348)
Q Consensus       309 ~~~PTl~~~~--~G~~v~~~~  327 (348)
                      .++||++++.  +|+++.+..
T Consensus       107 ~~~Pt~~lid~~~G~i~~~~~  127 (146)
T 1o8x_A          107 ESIPTLIGVDADSGDVVTTRA  127 (146)
T ss_dssp             CSSSEEEEEETTTCCEEESCH
T ss_pred             CCCCEEEEEECCCCeEEEecc
Confidence            9999988885  899887643

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=99.32  E-value=4.1e-12  Score=103.75  Aligned_cols=90  Identities=14%  Similarity=0.166  Sum_probs=69.7

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHH---HHHHhCC-cEEEEEEECCCchh-HHHH--------------------HHhC
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIK---LSRQMAG-TVVFARMNGDENDS-CMQF--------------------LRDM  306 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~---la~~~~~-~v~~~~vd~~~~~~-~~~l--------------------~~~~  306 (348)
                      .+++++|+||++||++|+.+.|.+.+   +.+.+++ ++.++.|+.+...+ .+++                    ++.|
T Consensus        26 ~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  105 (142)
T 3ewl_A           26 KAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQLY  105 (142)
T ss_dssp             CCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHTTCS
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhhHHHc
Confidence            47999999999999999999999888   8887753 49999999986543 1222                    2379


Q ss_pred             CCCccceEEEE-eCCeEEEEEeCCChHHHHHHHHHHhC
Q 018973          307 NVVEVPTFLFI-RDGQIRGRYVGSGKGELIGEILRYQG  343 (348)
Q Consensus       307 ~V~~~PTl~~~-~~G~~v~~~~G~~~~~L~~~l~~~~~  343 (348)
                      +|.++||++++ ++|+++.  .+.+.++|.++|+++.+
T Consensus       106 ~v~~~P~~~lid~~G~i~~--~~~~~~~l~~~l~~~~~  141 (142)
T 3ewl_A          106 DIRATPTIYLLDGRKRVIL--KDTSMEQLIDYLATQAG  141 (142)
T ss_dssp             CCCSSSEEEEECTTCBEEE--CSCCHHHHHHHHHC---
T ss_pred             CCCCCCeEEEECCCCCEEe--cCCCHHHHHHHHHHHcc
Confidence            99999987777 7999876  23488999999987654

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=99.31  E-value=7.9e-12  Score=104.49  Aligned_cols=102  Identities=9%  Similarity=0.170  Sum_probs=79.7

Q ss_pred             hhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHH---HHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEE
Q 018973          240 EDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTV---IKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLF  316 (348)
Q Consensus       240 ~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~  316 (348)
                      .++++.+..++..+|+++|+||++||.+|+.|....   .++.+.+.+++.++++|.+. ++..+++++|++.++||++|
T Consensus        29 ~~~~~Al~~Ak~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~~fv~v~~d~~~-~~~~~l~~~y~v~~~P~~~f  107 (153)
T 2dlx_A           29 GSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDS-EEGQRYIQFYKLGDFPYVSI  107 (153)
T ss_dssp             SCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSS-HHHHHHHHHHTCCSSSEEEE
T ss_pred             cCHHHHHHHHHHcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHcCeEEEEEecCC-HhHHHHHHHcCCCCCCEEEE
Confidence            456777665555689999999999999999996544   44444443468999999965 44567999999999999988


Q ss_pred             Ee-C-CeEEEEEeCCChHHHHHHHHHHh
Q 018973          317 IR-D-GQIRGRYVGSGKGELIGEILRYQ  342 (348)
Q Consensus       317 ~~-~-G~~v~~~~G~~~~~L~~~l~~~~  342 (348)
                      +. + |+.+.++.|.+.+++.+.|++.+
T Consensus       108 ld~~~G~~l~~~~g~~~~~fl~~L~~~l  135 (153)
T 2dlx_A          108 LDPRTGQKLVEWHQLDVSSFLDQVTGFL  135 (153)
T ss_dssp             ECTTTCCCCEEESSCCHHHHHHHHHHHH
T ss_pred             EeCCCCcEeeecCCCCHHHHHHHHHHHH
Confidence            84 5 77777776669999998888765

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=99.30  E-value=3.4e-12  Score=108.98  Aligned_cols=88  Identities=22%  Similarity=0.284  Sum_probs=70.8

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch-h-------------------HHHHHHhCCCCcc
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND-S-------------------CMQFLRDMNVVEV  311 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~-~-------------------~~~l~~~~~V~~~  311 (348)
                      .+++++|+||++||++|+.+.|.|.++.++   ++.++.|++++.. .                   ..++++.|+|.++
T Consensus        57 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~---~v~vv~vs~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  133 (176)
T 3kh7_A           57 KGKPALVNVWGTWCPSCRVEHPELTRLAEQ---GVVIYGINYKDDNAAAIKWLNELHNPYLLSISDADGTLGLDLGVYGA  133 (176)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHT---TCEEEEEEESCCHHHHHHHHHHTTCCCSEEEEETTCHHHHHHTCCSS
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHC---CCEEEEEeCCCCHHHHHHHHHHcCCCCceEEECCcchHHHHcCCCCC
Confidence            478999999999999999999999999887   4788888753321 1                   1237778999999


Q ss_pred             ceE-EEEeCCeEEEEEeCC-ChHHHHHHHHHHh
Q 018973          312 PTF-LFIRDGQIRGRYVGS-GKGELIGEILRYQ  342 (348)
Q Consensus       312 PTl-~~~~~G~~v~~~~G~-~~~~L~~~l~~~~  342 (348)
                      |++ ++.++|+++.++.|. +.+++.+.|++++
T Consensus       134 P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l  166 (176)
T 3kh7_A          134 PETYLIDKQGIIRHKIVGVVDQKVWREQLAPLY  166 (176)
T ss_dssp             CEEEEECTTCBEEEEEESCCCHHHHHHHTHHHH
T ss_pred             CeEEEECCCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence            955 555899999999999 8888888877764

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=99.30  E-value=2.5e-12  Score=108.32  Aligned_cols=75  Identities=13%  Similarity=0.061  Sum_probs=62.9

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCc--------------------hhHHHHHHHcCcCCCC
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDES--------------------EKTKELCEREKIKKVP  197 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~--------------------~~~~~l~~~~~V~~~P  197 (348)
                      +++++||+||++||++|+.+.|.|++++++  ++.++.|++++.                    +...+++++|+|.++|
T Consensus        50 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~--~v~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P  127 (168)
T 2b1k_A           50 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAP  127 (168)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHT--TCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTCHHHHHHTCCSSS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHC--CCEEEEEECCCChHHHHHHHHHcCCCCceeeECcchHHHHHcCccccC
Confidence            689999999999999999999999999987  788888885532                    2234689999999999


Q ss_pred             e-EEEeeccccccccccC
Q 018973          198 H-FSFYKSMEKIHEEEGI  214 (348)
Q Consensus       198 t-~~~~~~g~~v~~~~G~  214 (348)
                      + +++.++|+.+.++.|.
T Consensus       128 ~~~lid~~G~i~~~~~g~  145 (168)
T 2b1k_A          128 ETFLIDGNGIIRYRHAGD  145 (168)
T ss_dssp             EEEEECTTSBEEEEEESC
T ss_pred             EEEEECCCCeEEEEEeCC
Confidence            5 6666799999888774

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=99.30  E-value=1.2e-11  Score=103.45  Aligned_cols=92  Identities=18%  Similarity=0.306  Sum_probs=77.1

Q ss_pred             CCcEEEEEEeCCCChh-hhhhhhHHHHHHHHhCC-----cEEEEEEECCCc-------------------------hhHH
Q 018973          252 DQKLIVLDVGLKHCGP-CVKVYPTVIKLSRQMAG-----TVVFARMNGDEN-------------------------DSCM  300 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~-C~~~~p~l~~la~~~~~-----~v~~~~vd~~~~-------------------------~~~~  300 (348)
                      .+++++|+||++||++ |..+.|.|.++.+++++     ++.++.|++|..                         +...
T Consensus        22 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~  101 (164)
T 2ggt_A           22 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVD  101 (164)
T ss_dssp             TTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHTTCSSCEEEECCHHHHH
T ss_pred             CCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHH
Confidence            4789999999999998 99999999999998853     689999988752                         2223


Q ss_pred             HHHHhCCCCccc----------------eEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973          301 QFLRDMNVVEVP----------------TFLFIRDGQIRGRYVGS-GKGELIGEILRYQG  343 (348)
Q Consensus       301 ~l~~~~~V~~~P----------------Tl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~  343 (348)
                      ++++.|+|..+|                ++++.++|+++.++.|. +.++|.+.|++++.
T Consensus       102 ~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~  161 (164)
T 2ggt_A          102 QVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMR  161 (164)
T ss_dssp             HHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHHHG
T ss_pred             HHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence            588899999999                45666899999999998 89999999988764

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=99.30  E-value=8.2e-12  Score=102.18  Aligned_cols=75  Identities=21%  Similarity=0.371  Sum_probs=64.6

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhC--CcEEEEEEECCCch---------------------hHHHHHHhCCC
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMA--GTVVFARMNGDEND---------------------SCMQFLRDMNV  308 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~--~~v~~~~vd~~~~~---------------------~~~~l~~~~~V  308 (348)
                      .+++++|+||++||++|+.+.|.|.+++++++  .++.++.|+++...                     ...+++++|+|
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  106 (144)
T 1o73_A           27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGV  106 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTC
T ss_pred             CCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHHHHHcCC
Confidence            47899999999999999999999999999987  46999999988642                     13468999999


Q ss_pred             CccceEEEEe--CCeEEEEE
Q 018973          309 VEVPTFLFIR--DGQIRGRY  326 (348)
Q Consensus       309 ~~~PTl~~~~--~G~~v~~~  326 (348)
                      .++||++++.  +|+++.+.
T Consensus       107 ~~~Pt~~lid~~~G~i~~~~  126 (144)
T 1o73_A          107 ESIPTLITINADTGAIIGTQ  126 (144)
T ss_dssp             CSSSEEEEEETTTCCEEESC
T ss_pred             CCCCEEEEEECCCCeEEecc
Confidence            9999988886  89988764

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=99.29  E-value=1.2e-11  Score=101.27  Aligned_cols=75  Identities=17%  Similarity=0.262  Sum_probs=64.3

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhC--CcEEEEEEECCCch---------------------hHHHHHHhCCC
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMA--GTVVFARMNGDEND---------------------SCMQFLRDMNV  308 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~--~~v~~~~vd~~~~~---------------------~~~~l~~~~~V  308 (348)
                      .+++++|+||++||++|+.+.|.|.+++++++  .++.++.|+++...                     ...+++++|+|
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  106 (144)
T 1i5g_A           27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDV  106 (144)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccccCchHHHHHHHHHcCC
Confidence            47899999999999999999999999999997  46999999988642                     13469999999


Q ss_pred             CccceEEEEe--CCeEEEEE
Q 018973          309 VEVPTFLFIR--DGQIRGRY  326 (348)
Q Consensus       309 ~~~PTl~~~~--~G~~v~~~  326 (348)
                      .++||++++.  +|+++.+.
T Consensus       107 ~~~P~~~lid~~~G~i~~~~  126 (144)
T 1i5g_A          107 KSIPTLVGVEADSGNIITTQ  126 (144)
T ss_dssp             CSSSEEEEEETTTCCEEESC
T ss_pred             CCCCEEEEEECCCCcEEecc
Confidence            9999988874  89988764

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=99.29  E-value=7.7e-12  Score=103.45  Aligned_cols=78  Identities=21%  Similarity=0.213  Sum_probs=66.0

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCCCch-h-------------------HHHHHHHcCcCC
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGDESE-K-------------------TKELCEREKIKK  195 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d~~~-~-------------------~~~l~~~~~V~~  195 (348)
                      +++++||+||++||++|+.+.|.|.++.+++++  +.|+.|++|... +                   ..++++.|+|.+
T Consensus        27 ~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  106 (154)
T 3kcm_A           27 KGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTTG  106 (154)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHHHHTCCS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHHHhCCCC
Confidence            689999999999999999999999999999975  899999988741 1                   134889999999


Q ss_pred             CCe-EEEeeccccccccccCC
Q 018973          196 VPH-FSFYKSMEKIHEEEGIG  215 (348)
Q Consensus       196 ~Pt-~~~~~~g~~v~~~~G~~  215 (348)
                      +|+ +++.++|+.+.++.|..
T Consensus       107 ~P~~~lid~~G~i~~~~~g~~  127 (154)
T 3kcm_A          107 VPETFVIDRHGVILKKVVGAM  127 (154)
T ss_dssp             BCEEEEECTTSBEEEEEESCC
T ss_pred             CCeEEEECCCCcEEEEEcCCC
Confidence            996 55557999999888854

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=99.29  E-value=5.8e-12  Score=105.75  Aligned_cols=72  Identities=13%  Similarity=0.175  Sum_probs=62.3

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCC------------------CchhH---------------
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGD------------------ESEKT---------------  184 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d------------------~~~~~---------------  184 (348)
                      +++++||+||++||++|+.+.|.|.++.++++++.|+.|++|                  +..+.               
T Consensus        36 ~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (165)
T 3ha9_A           36 GGDVVILWFMAAWCPSCVYMADLLDRLTEKYREISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWIM  115 (165)
T ss_dssp             CSSEEEEEEECTTCTTHHHHHHHHHHHHHHCTTEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHHSCTTSEE
T ss_pred             CCCEEEEEEECCCCcchhhhHHHHHHHHHHcCCcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHHcCCCCeeE
Confidence            689999999999999999999999999999999999999998                  32200               


Q ss_pred             ----HHHHHHcCcCCCCeEEEe-ecccccc
Q 018973          185 ----KELCEREKIKKVPHFSFY-KSMEKIH  209 (348)
Q Consensus       185 ----~~l~~~~~V~~~Pt~~~~-~~g~~v~  209 (348)
                          .++++.|+|.++|+++++ ++|+.+.
T Consensus       116 ~~d~~~~~~~~~v~~~P~~~lid~~G~i~~  145 (165)
T 3ha9_A          116 VMDDGSLVEKFNVRSIDYIVIMDKSSNVLY  145 (165)
T ss_dssp             EECCSHHHHHTTCCSSSEEEEEETTCCEEE
T ss_pred             EeChHHHHHHhCCCCceEEEEEcCCCcEEE
Confidence                268899999999998888 6777776

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=99.28  E-value=1.7e-11  Score=105.24  Aligned_cols=92  Identities=13%  Similarity=0.234  Sum_probs=74.0

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCc--------h------------------hHHHHHHh
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN--------D------------------SCMQFLRD  305 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~--------~------------------~~~~l~~~  305 (348)
                      .+++++|+||++||++|+.+.|.|.++.+++++++.++.|+.+..        +                  ...++++.
T Consensus        32 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  111 (188)
T 2cvb_A           32 HEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKA  111 (188)
T ss_dssp             CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHH
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhhcCeEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCcchHHHH
Confidence            479999999999999999999999999999976699999998421        0                  01237889


Q ss_pred             CCCCccceEEEE-eCCeEEEE--------EeCC-ChHHHHHHHHHHhC
Q 018973          306 MNVVEVPTFLFI-RDGQIRGR--------YVGS-GKGELIGEILRYQG  343 (348)
Q Consensus       306 ~~V~~~PTl~~~-~~G~~v~~--------~~G~-~~~~L~~~l~~~~~  343 (348)
                      |++.++|+++++ ++|+++.+        +.|. +.++|.+.|++++.
T Consensus       112 ~~v~~~P~~~lid~~G~i~~~g~~~~~~~~~g~~~~~~l~~~i~~ll~  159 (188)
T 2cvb_A          112 YRALRTPEVFLFDERRLLRYHGRVNDNPKDPSKVQSHDLEAAIEALLR  159 (188)
T ss_dssp             TTCCEESEEEEECTTCBEEEEECSSSCTTCGGGCCCCHHHHHHHHHHT
T ss_pred             cCCCCCCeEEEECCCCcEEEEEecCCccccccccCHHHHHHHHHHHHc
Confidence            999999987666 79999887        1222 57889999998864

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=99.28  E-value=1.4e-11  Score=100.93  Aligned_cols=87  Identities=10%  Similarity=0.076  Sum_probs=69.9

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchh-----------------------HHHHHHhCC
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDS-----------------------CMQFLRDMN  307 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~-----------------------~~~l~~~~~  307 (348)
                      .+++++|+||++||++|+.+.|.|.++.+++++ ++.++.|+.+...+                       ..++++.|+
T Consensus        31 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  110 (143)
T 4fo5_A           31 LGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKKYD  110 (143)
T ss_dssp             SCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGSHHHHHTT
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccchHHHHHcC
Confidence            579999999999999999999999999999964 49999999885431                       124788899


Q ss_pred             CCccceEEEE-eCCeEEEEEeCCChHHHHHHHHH
Q 018973          308 VVEVPTFLFI-RDGQIRGRYVGSGKGELIGEILR  340 (348)
Q Consensus       308 V~~~PTl~~~-~~G~~v~~~~G~~~~~L~~~l~~  340 (348)
                      |.++|+++++ ++|+++.+..  +.++|.+.|++
T Consensus       111 v~~~P~~~lid~~G~i~~~~~--~~~~l~~~l~~  142 (143)
T 4fo5_A          111 LRKGFKNFLINDEGVIIAANV--TPEKLTEILKA  142 (143)
T ss_dssp             GGGCCCEEEECTTSBEEEESC--CHHHHHHHHTC
T ss_pred             CCCCCcEEEECCCCEEEEccC--CHHHHHHHHHh
Confidence            9999976555 6999988744  45677766653

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=99.28  E-value=1.1e-11  Score=107.02  Aligned_cols=92  Identities=14%  Similarity=0.234  Sum_probs=75.3

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCc-EEEEEEECCC--------chhHHHHH-Hh----------------
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGT-VVFARMNGDE--------NDSCMQFL-RD----------------  305 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~~~--------~~~~~~l~-~~----------------  305 (348)
                      .+++++|+||++||++|+.+.|.|.++.++++++ +.++.|+++.        .+..++++ ++                
T Consensus        47 ~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~D~~~~  126 (190)
T 2vup_A           47 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGE  126 (190)
T ss_dssp             TTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTCEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCBSSST
T ss_pred             CCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcCCeEEEEEEcCccCCCCCCCHHHHHHHHHHhcCCCeEEEeecccCcc
Confidence            4789999999999999999999999999999754 9999999873        23344455 33                


Q ss_pred             -------------CCCCccc------e-EEEEeCCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973          306 -------------MNVVEVP------T-FLFIRDGQIRGRYVGS-GKGELIGEILRYQG  343 (348)
Q Consensus       306 -------------~~V~~~P------T-l~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~  343 (348)
                                   +++.++|      + +++.++|+++.++.|. +.++|.+.|++++.
T Consensus       127 ~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  185 (190)
T 2vup_A          127 NAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEKKLIPLLE  185 (190)
T ss_dssp             TBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHhhcCCcCCCccccccceEEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence                         3777888      4 5666899999999998 89999999988764

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=99.27  E-value=3.2e-11  Score=101.56  Aligned_cols=91  Identities=18%  Similarity=0.281  Sum_probs=75.9

Q ss_pred             CCcEEEEEEeCCCChh-hhhhhhHHHHHHHHhC-----CcEEEEEEECCCc-------------------------hhHH
Q 018973          252 DQKLIVLDVGLKHCGP-CVKVYPTVIKLSRQMA-----GTVVFARMNGDEN-------------------------DSCM  300 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~-C~~~~p~l~~la~~~~-----~~v~~~~vd~~~~-------------------------~~~~  300 (348)
                      .+++++|+||++||++ |+.+.|.|.++.++++     +++.++.|+++..                         +...
T Consensus        25 ~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~  104 (171)
T 2rli_A           25 RGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVA  104 (171)
T ss_dssp             TTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTTCTTCCEEECCHHHHH
T ss_pred             CCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHH
Confidence            4789999999999998 9999999999999884     4699999998732                         1123


Q ss_pred             HHHHhCCCCccc---------------e-EEEEeCCeEEEEEeCC-ChHHHHHHHHHHh
Q 018973          301 QFLRDMNVVEVP---------------T-FLFIRDGQIRGRYVGS-GKGELIGEILRYQ  342 (348)
Q Consensus       301 ~l~~~~~V~~~P---------------T-l~~~~~G~~v~~~~G~-~~~~L~~~l~~~~  342 (348)
                      ++++.|+|..+|               + +++.++|+++.++.|. +.++|.+.|++++
T Consensus       105 ~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll  163 (171)
T 2rli_A          105 QASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSRSAEQISDSVRRHM  163 (171)
T ss_dssp             HHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEESSCCHHHHHHHHHHHH
T ss_pred             HHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence            588899999888               5 5555899999999998 8889998888775

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=99.27  E-value=1.6e-11  Score=103.59  Aligned_cols=76  Identities=16%  Similarity=0.318  Sum_probs=64.5

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC--cEEEEEEECCCchh---------------------HHHHHHhCCC
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG--TVVFARMNGDENDS---------------------CMQFLRDMNV  308 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--~v~~~~vd~~~~~~---------------------~~~l~~~~~V  308 (348)
                      .+++++|+||++||++|+.+.|.|.++++++++  ++.++.|+++...+                     ..+++++|+|
T Consensus        47 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  126 (165)
T 3s9f_A           47 SGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSV  126 (165)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHHHHHcCC
Confidence            579999999999999999999999999999975  69999999887631                     1468999999


Q ss_pred             CccceEEEEe-C-CeEEEEEe
Q 018973          309 VEVPTFLFIR-D-GQIRGRYV  327 (348)
Q Consensus       309 ~~~PTl~~~~-~-G~~v~~~~  327 (348)
                      .++||++++. + |+++.+..
T Consensus       127 ~~~Pt~~lid~~~G~iv~~~~  147 (165)
T 3s9f_A          127 ESIPTLIGLNADTGDTVTTRA  147 (165)
T ss_dssp             CSSSEEEEEETTTCCEEESCH
T ss_pred             CCCCEEEEEeCCCCEEEeccc
Confidence            9999887775 5 99887643

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=99.27  E-value=8e-12  Score=105.83  Aligned_cols=91  Identities=15%  Similarity=0.257  Sum_probs=70.6

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCc-EEEEEEECC--------CchhHHHHH-------------------
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGT-VVFARMNGD--------ENDSCMQFL-------------------  303 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~~--------~~~~~~~l~-------------------  303 (348)
                      .+++++|+||++||++|+ ..|.|.++.++++++ +.++.|+++        ..+..++++                   
T Consensus        31 ~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~~~~~~p~~~d~d~~~~  109 (171)
T 3cmi_A           31 KGKVVLIVNVASKCGFTP-QYKELEALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNGG  109 (171)
T ss_dssp             TTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEEECSCC------------------CCCSCBBCCCBSSST
T ss_pred             CCCEEEEEEEecCCCcch-hHHHHHHHHHHhccCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCceEEeeccCCCc
Confidence            478999999999999999 999999999999754 899999764        112223343                   


Q ss_pred             -----------HhCCCCccc------e-EEEEeCCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973          304 -----------RDMNVVEVP------T-FLFIRDGQIRGRYVGS-GKGELIGEILRYQG  343 (348)
Q Consensus       304 -----------~~~~V~~~P------T-l~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~  343 (348)
                                 +.|++.++|      + +++.++|+++.++.|. +.++|.+.|++++.
T Consensus       110 ~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  168 (171)
T 3cmi_A          110 NEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYERYSSLTKPSSLSETIEELLK  168 (171)
T ss_dssp             TBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCEEEEECTTSCGGGGHHHHHHHHT
T ss_pred             cchHHHHHHHhccCCcCCCCcccccceEEEECCCCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence                       246788899      5 5666899999999998 88999999998864

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=99.26  E-value=2.5e-11  Score=102.04  Aligned_cols=93  Identities=18%  Similarity=0.325  Sum_probs=75.7

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCc-EEEEEEECCC--------chhHHHHHH-hC---------------
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGT-VVFARMNGDE--------NDSCMQFLR-DM---------------  306 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~~~--------~~~~~~l~~-~~---------------  306 (348)
                      .+++++|+||++||++|+.+.|.|.++.++++++ +.++.|+++.        .+..+++++ ++               
T Consensus        31 ~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  110 (170)
T 2p5q_A           31 KGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQGLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDVNGE  110 (170)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHHTCCCSCBBCCCBSSST
T ss_pred             CCCEEEEEEEeccCCccHHHHHHHHHHHHHhccCCEEEEEEECCCCCCCCCCCHHHHHHHHHHhcCCCceeEeeeccCCC
Confidence            4799999999999999999999999999999765 9999999863        234455666 43               


Q ss_pred             --------------CC--Cccc---e-EEEEeCCeEEEEEeCC-ChHHHHHHHHHHhCC
Q 018973          307 --------------NV--VEVP---T-FLFIRDGQIRGRYVGS-GKGELIGEILRYQGV  344 (348)
Q Consensus       307 --------------~V--~~~P---T-l~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~~  344 (348)
                                    ++  .++|   + +++.++|+++.++.|. +.++|.+.|++++..
T Consensus       111 ~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~  169 (170)
T 2p5q_A          111 NASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQVVDRYYPTTSPLSLERDIKQLLEI  169 (170)
T ss_dssp             TBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHHTTC
T ss_pred             chHHHHHHHHhcCCCccCCcccccccEEEECCCCCEEEeeCCCCCHHHHHHHHHHHhhc
Confidence                          34  5678   5 5555899999999999 889999999988753

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=99.26  E-value=1.5e-11  Score=106.15  Aligned_cols=91  Identities=15%  Similarity=0.191  Sum_probs=74.2

Q ss_pred             Cc-EEEEEEeCCCChhhhhhhhHHHHHHHHhCCc-EEEEEEECCCc--------------------------hhHHHHHH
Q 018973          253 QK-LIVLDVGLKHCGPCVKVYPTVIKLSRQMAGT-VVFARMNGDEN--------------------------DSCMQFLR  304 (348)
Q Consensus       253 ~k-~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~~~~--------------------------~~~~~l~~  304 (348)
                      ++ +++|+||++||++|+.+.|.|.++.++++++ +.++.|+.+..                          +...++++
T Consensus        45 gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~  124 (196)
T 2ywi_A           45 SDAATVIMFICNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQEVAK  124 (196)
T ss_dssp             CSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSCHHHH
T ss_pred             CCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCchHHHH
Confidence            45 6999999999999999999999999999754 99999998421                          00123888


Q ss_pred             hCCCCccceEEEE-eCCeEEEE---------EeCC-ChHHHHHHHHHHhC
Q 018973          305 DMNVVEVPTFLFI-RDGQIRGR---------YVGS-GKGELIGEILRYQG  343 (348)
Q Consensus       305 ~~~V~~~PTl~~~-~~G~~v~~---------~~G~-~~~~L~~~l~~~~~  343 (348)
                      +|+|..+|+++++ ++|+++.+         +.|. +.++|.+.|++++.
T Consensus       125 ~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll~  174 (196)
T 2ywi_A          125 AYDAACTPDFYIFDRDLKCVYRGQLDDSRPNNGIPVTGESIRAALDALLE  174 (196)
T ss_dssp             HHTCCEESEEEEEETTCBEEEEECSSSCCTTTCCCCCCHHHHHHHHHHHH
T ss_pred             HhCCCCCCeEEEEcCCCeEEEccccCcccccccCccCHHHHHHHHHHHHc
Confidence            9999999987666 79999988         4577 88999999998753

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=99.26  E-value=2.8e-11  Score=114.69  Aligned_cols=91  Identities=13%  Similarity=0.158  Sum_probs=77.1

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCch------------------------hHHHHHHhC
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDEND------------------------SCMQFLRDM  306 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~------------------------~~~~l~~~~  306 (348)
                      .+++++|+||++||++|+.+.|.|.++.+++++ ++.++.|++++..                        ...+++++|
T Consensus        81 ~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~~~l~~~y  160 (352)
T 2hyx_A           81 RGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYATWTNY  160 (352)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTTSHHHHHT
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcCCeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCcHHHHHHc
Confidence            579999999999999999999999999999975 4999999876310                        012488889


Q ss_pred             CCCccceEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHh
Q 018973          307 NVVEVPTFLFI-RDGQIRGRYVGS-GKGELIGEILRYQ  342 (348)
Q Consensus       307 ~V~~~PTl~~~-~~G~~v~~~~G~-~~~~L~~~l~~~~  342 (348)
                      +|..+||++++ ++|+++.++.|. +.++|.+.|++++
T Consensus       161 gV~~~Pt~~lID~~G~Iv~~~~G~~~~~~l~~~I~~lL  198 (352)
T 2hyx_A          161 RNRYWPAEYLIDATGTVRHIKFGEGDYNVTETLVRQLL  198 (352)
T ss_dssp             TCCEESEEEEECTTSBEEEEEESBCCHHHHHHHHHHHH
T ss_pred             CCCccCEEEEEeCCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence            99999986666 899999999998 8899999988875

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=99.26  E-value=4.3e-12  Score=103.61  Aligned_cols=73  Identities=11%  Similarity=0.179  Sum_probs=58.3

Q ss_pred             cCCCEEEEEEeCCCCHHHHhhhhHHHH---HHHHcC--CcEEEEEeCCCchh-HHH------------------H--HHH
Q 018973          137 AKNKLVVVEFAASRSLDSSKIYPFMVD---LSRQCN--DVEFILVMGDESEK-TKE------------------L--CER  190 (348)
Q Consensus       137 ~~~k~vvV~F~a~wC~~C~~~~p~l~~---la~~~~--~v~f~~vd~d~~~~-~~~------------------l--~~~  190 (348)
                      .+++++||+||++||++|+...|.|.+   +.++|+  ++.++.|++|+..+ ..+                  +  ++.
T Consensus        25 ~~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  104 (142)
T 3ewl_A           25 LKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQL  104 (142)
T ss_dssp             CCCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHTTC
T ss_pred             cCCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhhHHH
Confidence            368999999999999999999999988   888874  59999999986432 111                  2  338


Q ss_pred             cCcCCCCeEEEe-ecccccc
Q 018973          191 EKIKKVPHFSFY-KSMEKIH  209 (348)
Q Consensus       191 ~~V~~~Pt~~~~-~~g~~v~  209 (348)
                      |+|.++|+++++ ++|+.+.
T Consensus       105 ~~v~~~P~~~lid~~G~i~~  124 (142)
T 3ewl_A          105 YDIRATPTIYLLDGRKRVIL  124 (142)
T ss_dssp             SCCCSSSEEEEECTTCBEEE
T ss_pred             cCCCCCCeEEEECCCCCEEe
Confidence            999999998877 5777765

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=99.25  E-value=9.8e-12  Score=102.71  Aligned_cols=74  Identities=14%  Similarity=0.192  Sum_probs=63.9

Q ss_pred             CCCEEEEEEeCCCCHH--HHhhhhHHHHHHHHc-C--CcEEEEEeCCCchh----------------------HHHHHHH
Q 018973          138 KNKLVVVEFAASRSLD--SSKIYPFMVDLSRQC-N--DVEFILVMGDESEK----------------------TKELCER  190 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~--C~~~~p~l~~la~~~-~--~v~f~~vd~d~~~~----------------------~~~l~~~  190 (348)
                      ++++|||+||++||++  |+...|.|.++.++| .  ++.|+.|++|+.++                      ..++++.
T Consensus        32 ~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  111 (150)
T 3fw2_A           32 KQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQ  111 (150)
T ss_dssp             TTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHH
T ss_pred             CCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHHHHH
Confidence            6899999999999999  999999999999998 4  49999999987531                      2378999


Q ss_pred             cCcCCCCeEEEe-ecccccccc
Q 018973          191 EKIKKVPHFSFY-KSMEKIHEE  211 (348)
Q Consensus       191 ~~V~~~Pt~~~~-~~g~~v~~~  211 (348)
                      |+|.++|+++++ ++|+.+.++
T Consensus       112 ~~v~~~P~~~lid~~G~i~~~~  133 (150)
T 3fw2_A          112 YSIYKIPANILLSSDGKILAKN  133 (150)
T ss_dssp             TTCCSSSEEEEECTTSBEEEES
T ss_pred             cCCCccCeEEEECCCCEEEEcc
Confidence            999999998888 688887755

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.25  E-value=6.2e-12  Score=104.15  Aligned_cols=76  Identities=14%  Similarity=0.177  Sum_probs=63.0

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCch--------------------hHHHHHHHcCcCCCC
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESE--------------------KTKELCEREKIKKVP  197 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~--------------------~~~~l~~~~~V~~~P  197 (348)
                      ++++++|+||++||++|+.+.|.|.+++++ +++.|+.|++++.+                    ...++++.|+|.++|
T Consensus        41 ~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~-~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P  119 (156)
T 1kng_A           41 KGKVSLVNVWASWCVPCHDEAPLLTELGKD-KRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGVP  119 (156)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHTTC-TTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSSC
T ss_pred             CCCEEEEEEEcccCHhHHHHHHHHHHHHhc-CCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHHHhcCcCccC
Confidence            578999999999999999999999999887 66999999976421                    134688899999999


Q ss_pred             e-EEEeeccccccccccC
Q 018973          198 H-FSFYKSMEKIHEEEGI  214 (348)
Q Consensus       198 t-~~~~~~g~~v~~~~G~  214 (348)
                      + +++.++|+.+.++.|.
T Consensus       120 ~~~~id~~G~i~~~~~g~  137 (156)
T 1kng_A          120 ETFVVGREGTIVYKLVGP  137 (156)
T ss_dssp             EEEEECTTSBEEEEEESC
T ss_pred             eEEEEcCCCCEEEEEeCC
Confidence            6 5555899988877774

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=98.90  E-value=6.1e-13  Score=108.63  Aligned_cols=76  Identities=21%  Similarity=0.297  Sum_probs=63.3

Q ss_pred             CCC-EEEEEEeCCCCHHHHhhhhHHHHHHHHc----CCcEEEEEeCCCchh----------------------HHHHHHH
Q 018973          138 KNK-LVVVEFAASRSLDSSKIYPFMVDLSRQC----NDVEFILVMGDESEK----------------------TKELCER  190 (348)
Q Consensus       138 ~~k-~vvV~F~a~wC~~C~~~~p~l~~la~~~----~~v~f~~vd~d~~~~----------------------~~~l~~~  190 (348)
                      +++ +++|+||++||++|+.+.|.|.++++++    +++.++.|++|+.++                      ..++++.
T Consensus        24 ~gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (143)
T 2lus_A           24 KDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAK  103 (143)
Confidence            567 9999999999999999999999999988    468888888875320                      1468999


Q ss_pred             cCcCCCCeEEEee-cccccccccc
Q 018973          191 EKIKKVPHFSFYK-SMEKIHEEEG  213 (348)
Q Consensus       191 ~~V~~~Pt~~~~~-~g~~v~~~~G  213 (348)
                      |+|.++||++++. +|+.+.+..+
T Consensus       104 ~~v~~~P~~~lid~~G~i~~~~~~  127 (143)
T 2lus_A          104 YGITGIPALVIVKKDGTLISMNGR  127 (143)
Confidence            9999999988886 8888876433

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.24  E-value=1.1e-11  Score=102.42  Aligned_cols=77  Identities=12%  Similarity=0.143  Sum_probs=64.2

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCCCc--------------------hhHHHHHHHcCcCC
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGDES--------------------EKTKELCEREKIKK  195 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d~~--------------------~~~~~l~~~~~V~~  195 (348)
                      +++++||+||++||++|+.+.|.|.++++++++  +.|+.|+.+..                    +...++++.|+|.+
T Consensus        27 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~  106 (153)
T 2l5o_A           27 QGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQAFGTQV  106 (153)
T ss_dssp             TTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHHHHTCCS
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHHHcCCCc
Confidence            689999999999999999999999999999874  88888774311                    11346899999999


Q ss_pred             CCeEEEe-eccccccccccC
Q 018973          196 VPHFSFY-KSMEKIHEEEGI  214 (348)
Q Consensus       196 ~Pt~~~~-~~g~~v~~~~G~  214 (348)
                      +|+++++ ++|+.+..+.|.
T Consensus       107 ~P~~~lid~~G~i~~~~~g~  126 (153)
T 2l5o_A          107 YPTSVLIGKKGEILKTYVGE  126 (153)
T ss_dssp             SSEEEEECSSSCCCEEEESS
T ss_pred             cCeEEEECCCCcEEEEEcCC
Confidence            9998888 789988888774

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=99.24  E-value=7.4e-11  Score=106.58  Aligned_cols=204  Identities=10%  Similarity=0.079  Sum_probs=137.6

Q ss_pred             CCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHc-CCcEEEEEeCCCchhHHHHHHHcCcCCC
Q 018973          118 DERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQC-NDVEFILVMGDESEKTKELCEREKIKKV  196 (348)
Q Consensus       118 ~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~-~~v~f~~vd~d~~~~~~~l~~~~~V~~~  196 (348)
                      .+.++++.+.+++++.+.  .+..++|-|+++||   ....+.|.++|+.+ .++.|+.+.-      .+++++|+++. 
T Consensus         5 gP~v~~l~s~~~~~~~l~--~~~v~vvgff~~~~---~~~~~~f~~~A~~lr~~~~F~~~~~------~~v~~~~~~~~-   72 (252)
T 2h8l_A            5 SPASVPLRTEEEFKKFIS--DKDASIVGFFDDSF---SEAHSEFLKAASNLRDNYRFAHTNV------ESLVNEYDDNG-   72 (252)
T ss_dssp             -CCEEECCSHHHHHHHHT--SSSCEEEEEESCTT---SHHHHHHHHHHHHTTTTSCEEEECC------HHHHHHHCSSS-
T ss_pred             CCCceeecCHHHHHHHhh--cCCeEEEEEECCCC---ChHHHHHHHHHHhcccCcEEEEECh------HHHHHHhCCCC-
Confidence            345888989999999887  56788999999985   45677899999998 5599988841      34899999997 


Q ss_pred             CeEEEeecccc-------cccc-ccC-CCCcccccccccCCCccceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChh
Q 018973          197 PHFSFYKSMEK-------IHEE-EGI-GPDQLMGDVLYYGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGP  267 (348)
Q Consensus       197 Pt~~~~~~g~~-------v~~~-~G~-~~~~l~~~v~~~~~~~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~  267 (348)
                      |++++|+.+..       ...+ .|. +.+.|...+....  .+.+.++ +.+++..+ .     +.+++|.|+...+..
T Consensus        73 p~i~~fk~~~~~~kf~e~~~~y~~g~~~~~~l~~fi~~~~--~Plv~e~-t~~n~~~~-~-----~~~~~v~~~~~~~~~  143 (252)
T 2h8l_A           73 EGIILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENI--FGICPHM-TEDNKDLI-Q-----GKDLLIAYYDVDYEK  143 (252)
T ss_dssp             EEEEEECCGGGCCTTSCSEEECCCSSCCHHHHHHHHHHHS--SCSSCEE-CTTTHHHH-S-----SSSEEEEEECCBTTT
T ss_pred             CcEEEEcchhhcccccccccccCCCCcCHHHHHHHHHhcc--cCCeeec-ccccHhhh-c-----CCCeEEEEeecchhh
Confidence            99999986421       1223 342 2233333222211  2233333 44555554 2     234555566443321


Q ss_pred             ----hhhhhhHHHHHHHHhCCc---EEEEEEECCCchhHHHHHHhCCC----CccceEEEEe-CCeEEEEEeCC-ChHH-
Q 018973          268 ----CVKVYPTVIKLSRQMAGT---VVFARMNGDENDSCMQFLRDMNV----VEVPTFLFIR-DGQIRGRYVGS-GKGE-  333 (348)
Q Consensus       268 ----C~~~~p~l~~la~~~~~~---v~~~~vd~~~~~~~~~l~~~~~V----~~~PTl~~~~-~G~~v~~~~G~-~~~~-  333 (348)
                          .......+.+++++++++   +.|+.+|.++...   +++.||+    ..+|.++++. +|+ ...+.+. +.+. 
T Consensus       144 ~~~~~~~~~~~~~~vA~~~~~k~~~~~F~~~d~~~~~~---~~~~fgl~~~~~~~P~v~i~~~~~~-ky~~~~~~t~~~~  219 (252)
T 2h8l_A          144 NAKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKTFSH---ELSDFGLESTAGEIPVVAIRTAKGE-KFVMQEEFSRDGK  219 (252)
T ss_dssp             BHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEETTTTHH---HHGGGTCCCCSCSSCEEEEECTTSC-EEECCSCCCTTSH
T ss_pred             cchhHHHHHHHHHHHHHHccccCceEEEEEEchHHHHH---HHHHcCCCCccCCCCEEEEEeCcCc-EecCCcccCcchH
Confidence                124667788899999766   9999999998776   8899999    3689998884 343 3445555 7777 


Q ss_pred             -HHHHHHHHhCCCC
Q 018973          334 -LIGEILRYQGVRV  346 (348)
Q Consensus       334 -L~~~l~~~~~~~~  346 (348)
                       |.+|++.++.-++
T Consensus       220 ~i~~F~~~~~~Gkl  233 (252)
T 2h8l_A          220 ALERFLQDYFDGNL  233 (252)
T ss_dssp             HHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHCCCc
Confidence             9999999875443

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.23  E-value=2.3e-11  Score=104.16  Aligned_cols=91  Identities=15%  Similarity=0.226  Sum_probs=74.1

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCc-EEEEEEECCC--------chhHHHHHHh-CC--------------
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGT-VVFARMNGDE--------NDSCMQFLRD-MN--------------  307 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~~~--------~~~~~~l~~~-~~--------------  307 (348)
                      .+++++|+||++||++|+.+.|.|.++.++++++ +.++.|+++.        .+..++++++ ++              
T Consensus        48 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~g~  127 (181)
T 2p31_A           48 RGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGT  127 (181)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSST
T ss_pred             CCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcCCEEEEEEECcCCCCCCCCCHHHHHHHHHhhcCCCceeEeecccCCc
Confidence            4789999999999999999999999999999755 9999999863        2344556655 32              


Q ss_pred             ---------CCccc--------eEEEEeCCeEEEEEeCC-ChHHHHHHHHHHh
Q 018973          308 ---------VVEVP--------TFLFIRDGQIRGRYVGS-GKGELIGEILRYQ  342 (348)
Q Consensus       308 ---------V~~~P--------Tl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~  342 (348)
                               +..+|        ++++.++|+++.++.|. +.++|.+.|++++
T Consensus       128 ~~~~~~~~~~~~~P~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll  180 (181)
T 2p31_A          128 GAHPAFKYLAQTSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITALV  180 (181)
T ss_dssp             TSCHHHHHHHHHHSCCCCSTTCEEEECTTSCEEEEECTTSCHHHHHHHHHTTC
T ss_pred             cchhhhhhhhhcCCCccccceeEEEEcCCCCEEEEeCCCCCHHHHHHHHHHHh
Confidence                     34578        56777899999999998 8999999998765

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.23  E-value=2.5e-11  Score=103.90  Aligned_cols=77  Identities=18%  Similarity=0.240  Sum_probs=65.4

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCc--hhHHHHHHHcCcC-------------------
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDES--EKTKELCEREKIK-------------------  194 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~--~~~~~l~~~~~V~-------------------  194 (348)
                      +++++||+||++||++|+...|.|.++.++|+  ++.++.|++|..  +..+++++++++.                   
T Consensus        59 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  138 (186)
T 1jfu_A           59 RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAI  138 (186)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTT
T ss_pred             CCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCCCCHHHHHHHHHHcCCCCCceEECCcchHHHHhccc
Confidence            68999999999999999999999999999987  599999998864  3456778888875                   


Q ss_pred             ----CCCeEEEe-eccccccccccC
Q 018973          195 ----KVPHFSFY-KSMEKIHEEEGI  214 (348)
Q Consensus       195 ----~~Pt~~~~-~~g~~v~~~~G~  214 (348)
                          ++|+++++ ++|+.+.++.|.
T Consensus       139 ~~~~~~P~~~lid~~G~i~~~~~g~  163 (186)
T 1jfu_A          139 GRALGMPTSVLVDPQGCEIATIAGP  163 (186)
T ss_dssp             TCCSSSSEEEEECTTSBEEEEEESC
T ss_pred             cccCCCCEEEEECCCCCEEEEEecC
Confidence                89987776 788888887774

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=99.22  E-value=9.6e-12  Score=98.34  Aligned_cols=69  Identities=12%  Similarity=0.136  Sum_probs=52.7

Q ss_pred             CCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCch--hHHHHHHHcCcCCCCeEEEeecccccccccc
Q 018973          139 NKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESE--KTKELCEREKIKKVPHFSFYKSMEKIHEEEG  213 (348)
Q Consensus       139 ~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~--~~~~l~~~~~V~~~Pt~~~~~~g~~v~~~~G  213 (348)
                      ++.|++ ||++||++|+.+.|.|+++..+|   .++.||.+...  ...+++++|||.++||+  |.+|+.+..+.|
T Consensus        19 ~~~vv~-f~a~~C~~C~~~~~~l~~~~~~~---~~v~v~~~~~~~~~~~~l~~~~~v~~~Pt~--~~~g~~v~~~~~   89 (116)
T 2e7p_A           19 SAPVVV-FSKTYCGYCNRVKQLLTQVGASY---KVVELDELSDGSQLQSALAHWTGRGTVPNV--FIGGKQIGGCDT   89 (116)
T ss_dssp             SSSEEE-EECTTCHHHHHHHHHHHHHTCCC---EEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EETTEEEECHHH
T ss_pred             CCCEEE-EECCCChhHHHHHHHHHHcCCCe---EEEEccCCCChHHHHHHHHHHhCCCCcCEE--EECCEEECChHH
Confidence            455666 99999999999999999986553   66666655521  12468999999999999  558888876655

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=99.21  E-value=5.8e-11  Score=104.30  Aligned_cols=92  Identities=17%  Similarity=0.219  Sum_probs=73.8

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCc-EEEEEEECCC--------chhHHHHHH------hCCC--------
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGT-VVFARMNGDE--------NDSCMQFLR------DMNV--------  308 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~~~--------~~~~~~l~~------~~~V--------  308 (348)
                      .+++++|+||++||++|+...|.|.++.++++++ +.++.|++++        .+.++++++      ++++        
T Consensus        46 ~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~g~~vv~v~~d~~~~~e~d~~~~i~~f~~~~~~~~~~~~~fp~l~d~  125 (208)
T 2f8a_A           46 RGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKC  125 (208)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTTTCSCHHHHHHHHHHTSSCTTCCCSSEEBCCC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHccCCCeEEEEEECCcccccCCCCHHHHHHHHHhcccccccccceEEEEEe
Confidence            4789999999999999999999999999999754 9999998862        234455665      4443        


Q ss_pred             ---------------------------------------------Cccc-eEEEEeCCeEEEEEeCC-ChHHHHHHHHHH
Q 018973          309 ---------------------------------------------VEVP-TFLFIRDGQIRGRYVGS-GKGELIGEILRY  341 (348)
Q Consensus       309 ---------------------------------------------~~~P-Tl~~~~~G~~v~~~~G~-~~~~L~~~l~~~  341 (348)
                                                                   ...| |+++.++|+++.++.|. +.++|.+.|+++
T Consensus       126 d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~tflID~~G~i~~~~~g~~~~~~l~~~I~~l  205 (208)
T 2f8a_A          126 EVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEAL  205 (208)
T ss_dssp             CCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHH
T ss_pred             ecCCCCccHHHHHHHhcCCCccccchhhccccccccccccccCccccCceEEEEcCCCcEEEEeCCCCCHHHHHHHHHHH
Confidence                                                         2237 56777999999999998 888999999887


Q ss_pred             hC
Q 018973          342 QG  343 (348)
Q Consensus       342 ~~  343 (348)
                      +.
T Consensus       206 l~  207 (208)
T 2f8a_A          206 LS  207 (208)
T ss_dssp             HC
T ss_pred             hh
Confidence            64

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=99.20  E-value=1.5e-11  Score=105.53  Aligned_cols=73  Identities=14%  Similarity=0.206  Sum_probs=62.1

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCc--------------------------hhHHHHHHH
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDES--------------------------EKTKELCER  190 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~--------------------------~~~~~l~~~  190 (348)
                      ++++|||+||++||++|+...|.|+++.++|.+ +.|+.|++|..                          +...++++.
T Consensus        32 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  111 (188)
T 2cvb_A           32 HEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKA  111 (188)
T ss_dssp             CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHH
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhhcCeEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCcchHHHH
Confidence            689999999999999999999999999999987 99999998521                          112468899


Q ss_pred             cCcCCCCeEEEe-eccccccc
Q 018973          191 EKIKKVPHFSFY-KSMEKIHE  210 (348)
Q Consensus       191 ~~V~~~Pt~~~~-~~g~~v~~  210 (348)
                      |+|..+|+++++ ++|+.+.+
T Consensus       112 ~~v~~~P~~~lid~~G~i~~~  132 (188)
T 2cvb_A          112 YRALRTPEVFLFDERRLLRYH  132 (188)
T ss_dssp             TTCCEESEEEEECTTCBEEEE
T ss_pred             cCCCCCCeEEEECCCCcEEEE
Confidence            999999998777 67887765

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=98.83  E-value=1.4e-12  Score=108.82  Aligned_cols=92  Identities=17%  Similarity=0.278  Sum_probs=71.2

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHH-HHHHhC--CcEEEEEEECCCchh-HHHHHH------------------hCC--
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIK-LSRQMA--GTVVFARMNGDENDS-CMQFLR------------------DMN--  307 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~-la~~~~--~~v~~~~vd~~~~~~-~~~l~~------------------~~~--  307 (348)
                      .+++++|+||++||++|+.+.|.|.+ +..++.  .++.++.|++++.++ .+++.+                  .|+  
T Consensus        32 ~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  111 (159)
T 2ls5_A           32 RGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVTYPLGLDPGADIFAKYALR  111 (159)
Confidence            47899999999999999999999998 887775  458899998876542 233333                  334  


Q ss_pred             CCccceEEEE-eCCeEEEEEeCCChHHHHHHHHHHhC
Q 018973          308 VVEVPTFLFI-RDGQIRGRYVGSGKGELIGEILRYQG  343 (348)
Q Consensus       308 V~~~PTl~~~-~~G~~v~~~~G~~~~~L~~~l~~~~~  343 (348)
                      +.++|+++++ ++|+++.++.|.+.+++.+.|+++.+
T Consensus       112 ~~~~P~~~lid~~G~i~~~~~g~~~~~l~~~l~~l~~  148 (159)
T 2ls5_A          112 DAGITRNVLIDREGKIVKLTRLYNEEEFASLVQQINE  148 (159)
Confidence            5679987766 89999999888866778877776644

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=99.20  E-value=2.1e-11  Score=104.23  Aligned_cols=77  Identities=6%  Similarity=0.007  Sum_probs=60.0

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--c------EEEEEeCCC-c-hhHHHHHHHc----------------
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--V------EFILVMGDE-S-EKTKELCERE----------------  191 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v------~f~~vd~d~-~-~~~~~l~~~~----------------  191 (348)
                      ++++|||+||++||++|+.+.|.|.+++++|++  +      .|+.|++|+ . +..+++++++                
T Consensus        58 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  137 (183)
T 3lwa_A           58 ENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIYDPPFMTAA  137 (183)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSCCCHHHHHHHHHHTTCCSCEEECTTCGGGG
T ss_pred             CCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCCCCHHHHHHHHHHcCCCccEEECCcchHHH
Confidence            689999999999999999999999999998854  7      999999987 2 3334444433                


Q ss_pred             -----CcCCCCe-EEEeeccccccccccC
Q 018973          192 -----KIKKVPH-FSFYKSMEKIHEEEGI  214 (348)
Q Consensus       192 -----~V~~~Pt-~~~~~~g~~v~~~~G~  214 (348)
                           +|..+|+ +++.++|+.+.++.|.
T Consensus       138 ~~~~~~v~~~P~~~lid~~G~i~~~~~g~  166 (183)
T 3lwa_A          138 SLGGVPASVIPTTIVLDKQHRPAAVFLRE  166 (183)
T ss_dssp             GTTTCCTTCCSEEEEECTTSCEEEEECSC
T ss_pred             HhccCCCCCCCeEEEECCCCcEEEEEcCC
Confidence                 5788996 5555788888777663

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=99.20  E-value=3.8e-11  Score=102.59  Aligned_cols=91  Identities=13%  Similarity=0.186  Sum_probs=72.2

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCc-EEEEEEECCC--------chhHHHHHHh-CCCC------------
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGT-VVFARMNGDE--------NDSCMQFLRD-MNVV------------  309 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~~~--------~~~~~~l~~~-~~V~------------  309 (348)
                      .+++++|+||++||++|+...|.|.++.++++++ +.++.|+++.        .+..++++++ +++.            
T Consensus        37 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~  116 (180)
T 3kij_A           37 KGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGS  116 (180)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSST
T ss_pred             CCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCeEEEEEECCccccCCCCCHHHHHHHHHHhcCCCCceeeeeeccCc
Confidence            4789999999999999999999999999999765 9999998753        3355667777 5542            


Q ss_pred             --------------ccc-----eEEEEeCCeEEEEEeCC-ChHHHHHHHHHHh
Q 018973          310 --------------EVP-----TFLFIRDGQIRGRYVGS-GKGELIGEILRYQ  342 (348)
Q Consensus       310 --------------~~P-----Tl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~  342 (348)
                                    ++|     |+++.++|+++.++.|. +.++|.+.|++++
T Consensus       117 ~~~~~~~~~~~~~~~~p~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~lL  169 (180)
T 3kij_A          117 EGEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPIEVIRPDIAALV  169 (180)
T ss_dssp             TCCHHHHHHHHHHTCCCSSTTCEEEECTTSCEEEEECTTCCGGGTHHHHHHHH
T ss_pred             cccHHHHHHHhcCCCCccccceEEEECCCCCEEEEECCCCCHHHHHHHHHHHH
Confidence                          145     47777999999999998 7766666666553

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=99.20  E-value=2e-11  Score=105.16  Aligned_cols=92  Identities=14%  Similarity=0.228  Sum_probs=71.4

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCc-EEEEEEECCC--------chhHHHHHH-h----------------
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGT-VVFARMNGDE--------NDSCMQFLR-D----------------  305 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~~~--------~~~~~~l~~-~----------------  305 (348)
                      .+++++|+||++||++|+.+.|.|.++.++++++ +.++.|+++.        .+..+++++ +                
T Consensus        45 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  124 (187)
T 3dwv_A           45 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGE  124 (187)
T ss_dssp             TTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGGTCEEEEEEBCCCSSCSSSBTTHHHHSCCBCCCCSSCBBCCBCCSCC
T ss_pred             CCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCCceeeccccCCc
Confidence            5789999999999999999999999999999765 8888888762        223222222 2                


Q ss_pred             ----------------CCCCccc---eE-EEEeCCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973          306 ----------------MNVVEVP---TF-LFIRDGQIRGRYVGS-GKGELIGEILRYQG  343 (348)
Q Consensus       306 ----------------~~V~~~P---Tl-~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~  343 (348)
                                      +++..+|   ++ ++.++|+++.++.|. +.++|.+.|++++.
T Consensus       125 ~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~~G~i~~~~~g~~~~~~l~~~i~~lL~  183 (187)
T 3dwv_A          125 NAHPLYEYMKKTKPGILATKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEEKLIPLLG  183 (187)
T ss_dssp             -CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHHHHHHC-
T ss_pred             chhHHHHHHHhhcCCccCCCccccceeEEEECCCCCEEEEECCCCCHHHHHHHHHHHHh
Confidence                            1334566   64 555899999999999 99999999998865

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=99.20  E-value=1.8e-11  Score=104.35  Aligned_cols=75  Identities=16%  Similarity=0.061  Sum_probs=62.2

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCch--------------------hHHHHHHHcCcCCCC
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESE--------------------KTKELCEREKIKKVP  197 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~--------------------~~~~l~~~~~V~~~P  197 (348)
                      ++++|||+||++||++|+...|.|.+++++  ++.|+.|++++.+                    ...++++.|+|..+|
T Consensus        57 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~--~v~vv~vs~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P  134 (176)
T 3kh7_A           57 KGKPALVNVWGTWCPSCRVEHPELTRLAEQ--GVVIYGINYKDDNAAAIKWLNELHNPYLLSISDADGTLGLDLGVYGAP  134 (176)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHT--TCEEEEEEESCCHHHHHHHHHHTTCCCSEEEEETTCHHHHHHTCCSSC
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHC--CCEEEEEeCCCCHHHHHHHHHHcCCCCceEEECCcchHHHHcCCCCCC
Confidence            689999999999999999999999999987  7999999864321                    134688899999999


Q ss_pred             eEE-EeeccccccccccC
Q 018973          198 HFS-FYKSMEKIHEEEGI  214 (348)
Q Consensus       198 t~~-~~~~g~~v~~~~G~  214 (348)
                      +++ +.++|+.+..+.|.
T Consensus       135 ~~~lid~~G~i~~~~~g~  152 (176)
T 3kh7_A          135 ETYLIDKQGIIRHKIVGV  152 (176)
T ss_dssp             EEEEECTTCBEEEEEESC
T ss_pred             eEEEECCCCeEEEEEcCC
Confidence            655 44789999888774

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=99.20  E-value=5.1e-11  Score=105.28  Aligned_cols=92  Identities=12%  Similarity=0.211  Sum_probs=73.1

Q ss_pred             CCc-EEEEEEeCCCChhhhhhhhHHHHHHHHhCCc-EEEEEEECCCc--------------------------hhHHHHH
Q 018973          252 DQK-LIVLDVGLKHCGPCVKVYPTVIKLSRQMAGT-VVFARMNGDEN--------------------------DSCMQFL  303 (348)
Q Consensus       252 ~~k-~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~~~~--------------------------~~~~~l~  303 (348)
                      .++ +++|+||++||++|+.+.|.|.++.++++++ +.++.|+.+..                          +...+++
T Consensus        57 ~gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~  136 (218)
T 3u5r_E           57 KDSPALLVAFISNRCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQSVA  136 (218)
T ss_dssp             TTCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECTTCHHH
T ss_pred             CCCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEECCccHHH
Confidence            356 6999999999999999999999999999765 99999998421                          0012388


Q ss_pred             HhCCCCccceEEEE-eCCeEEEEEe---------CC-ChHHHHHHHHHHhC
Q 018973          304 RDMNVVEVPTFLFI-RDGQIRGRYV---------GS-GKGELIGEILRYQG  343 (348)
Q Consensus       304 ~~~~V~~~PTl~~~-~~G~~v~~~~---------G~-~~~~L~~~l~~~~~  343 (348)
                      +.|+|..+|+++++ ++|+++.+..         +. +.++|.+.|++++.
T Consensus       137 ~~~~v~~~P~~~liD~~G~i~~~g~~d~~~~~~~~~~~~~~l~~~i~~ll~  187 (218)
T 3u5r_E          137 KAYGAACTPDFFLYDRERRLVYHGQFDDARPGNGKDVTGADLRAAVDAVLK  187 (218)
T ss_dssp             HHHTCCEESEEEEECTTCBEEEEECSSSCCTTSCCCCCCHHHHHHHHHHHT
T ss_pred             HHcCCCCCCeEEEECCCCcEEEeccccccccccccccCHHHHHHHHHHHHc
Confidence            89999999987777 7999986532         23 57899999998864

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=98.82  E-value=1.7e-12  Score=108.31  Aligned_cols=83  Identities=14%  Similarity=0.171  Sum_probs=64.5

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHH-HHHHcC---CcEEEEEeCCCchh-HHH------------------HHHHcC--
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVD-LSRQCN---DVEFILVMGDESEK-TKE------------------LCEREK--  192 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~-la~~~~---~v~f~~vd~d~~~~-~~~------------------l~~~~~--  192 (348)
                      ++++++|+||++||++|+.+.|.|.+ +.+++.   ++.++.|++|+.++ ..+                  +++.|+  
T Consensus        32 ~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  111 (159)
T 2ls5_A           32 RGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVTYPLGLDPGADIFAKYALR  111 (159)
Confidence            57999999999999999999999998 888876   48999999886421 222                  333444  


Q ss_pred             cCCCCeEEEe-eccccccccccCCCCccc
Q 018973          193 IKKVPHFSFY-KSMEKIHEEEGIGPDQLM  220 (348)
Q Consensus       193 V~~~Pt~~~~-~~g~~v~~~~G~~~~~l~  220 (348)
                      +.++|+++++ ++|+.+.++.|.+.+.+.
T Consensus       112 ~~~~P~~~lid~~G~i~~~~~g~~~~~l~  140 (159)
T 2ls5_A          112 DAGITRNVLIDREGKIVKLTRLYNEEEFA  140 (159)
Confidence            5669998877 789999888886655554

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=99.19  E-value=8.6e-11  Score=98.58  Aligned_cols=92  Identities=16%  Similarity=0.262  Sum_probs=72.5

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCc-EEEEEEECCC--------chhHHHH-HHhC---------------
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGT-VVFARMNGDE--------NDSCMQF-LRDM---------------  306 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~~~--------~~~~~~l-~~~~---------------  306 (348)
                      .+++++|+||++||++|+...|.|.++.++++++ +.++.|+++.        .+..+++ .+++               
T Consensus        30 ~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  109 (169)
T 2v1m_A           30 RGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGKGLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGS  109 (169)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSEEBCCCCCSST
T ss_pred             CCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcCCeEEEEEECCccCCCCCCCHHHHHHHHHHhcCCCCceEEEEeecCc
Confidence            4789999999999999999999999999999754 9999999863        1234445 2433               


Q ss_pred             --------------C-----CCccce-EEEEeCCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973          307 --------------N-----VVEVPT-FLFIRDGQIRGRYVGS-GKGELIGEILRYQG  343 (348)
Q Consensus       307 --------------~-----V~~~PT-l~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~  343 (348)
                                    +     |..+|+ +++.++|+++.++.|. +.++|.+.|++++.
T Consensus       110 ~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  167 (169)
T 2v1m_A          110 DADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGDIMELLE  167 (169)
T ss_dssp             TSCHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHHHH
T ss_pred             cccHHHHHHHhhcCCccCCcccccceEEEECCCCCEEEEcCCCCCHHHHHHHHHHHhc
Confidence                          3     333574 5666899999999998 88899999988764

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=99.19  E-value=1.9e-11  Score=102.21  Aligned_cols=86  Identities=15%  Similarity=0.183  Sum_probs=64.6

Q ss_pred             HHHHHHHHhcC--CCEEEEEEeCCCCHHHHhhhhHH---HHHHHHc-CCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEE
Q 018973          128 EEFDEALRLAK--NKLVVVEFAASRSLDSSKIYPFM---VDLSRQC-NDVEFILVMGDESEKTKELCEREKIKKVPHFSF  201 (348)
Q Consensus       128 ~~f~~~l~~~~--~k~vvV~F~a~wC~~C~~~~p~l---~~la~~~-~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~  201 (348)
                      .+|++++..++  +|+|+|+||++||.+|+.|....   .++.+.. .++.++++|.++ ++...+.++|+|.++||++|
T Consensus        29 ~~~~~Al~~Ak~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~~fv~v~~d~~~-~~~~~l~~~y~v~~~P~~~f  107 (153)
T 2dlx_A           29 GSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDS-EEGQRYIQFYKLGDFPYVSI  107 (153)
T ss_dssp             SCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSS-HHHHHHHHHHTCCSSSEEEE
T ss_pred             cCHHHHHHHHHHcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHcCeEEEEEecCC-HhHHHHHHHcCCCCCCEEEE
Confidence            46677766544  89999999999999999996443   2233222 258999999976 44678999999999999999


Q ss_pred             ee-c-cccccccccC
Q 018973          202 YK-S-MEKIHEEEGI  214 (348)
Q Consensus       202 ~~-~-g~~v~~~~G~  214 (348)
                      +. + |+.+..+.|.
T Consensus       108 ld~~~G~~l~~~~g~  122 (153)
T 2dlx_A          108 LDPRTGQKLVEWHQL  122 (153)
T ss_dssp             ECTTTCCCCEEESSC
T ss_pred             EeCCCCcEeeecCCC
Confidence            85 3 6677665443

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}

Probab=99.18  E-value=5e-10  Score=101.05  Aligned_cols=206  Identities=10%  Similarity=0.117  Sum_probs=138.4

Q ss_pred             CCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHc-CCcEEEEEeCCCchhHHHHHHHcCcCCC
Q 018973          118 DERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQC-NDVEFILVMGDESEKTKELCEREKIKKV  196 (348)
Q Consensus       118 ~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~-~~v~f~~vd~d~~~~~~~l~~~~~V~~~  196 (348)
                      .+.+.++.+.+++++.+.. .++.+||-|++++|   ....+.|.++|+.+ .++.|+.+.      ..+++++|+++. 
T Consensus         5 gP~v~~l~s~~~~~~~~~~-~~~v~vVgff~~~~---~~~~~~F~~~A~~lr~~~~F~~t~------~~~v~~~~~v~~-   73 (250)
T 3ec3_A            5 SPPSKEILTLKQVQEFLKD-GDDVVILGVFQGVG---DPGYLQYQDAANTLREDYKFHHTF------STEIAKFLKVSL-   73 (250)
T ss_dssp             CCSSEECCCHHHHHHHHHH-CSSCEEEEECSCTT---CHHHHHHHHHHHHHTTTCCEEEEC------CHHHHHHHTCCS-
T ss_pred             CCCceecCCHHHHHHHHhc-CCCeEEEEEEcCCC---chHHHHHHHHHHhhhcCcEEEEEC------cHHHHHHcCCCC-
Confidence            3468899999999998872 17889999999985   46788899999988 559998874      124888999987 


Q ss_pred             CeEEEeecccc-------cccccc---CCCCcccccccccCCCccceeecCChhhHHHHhhhcccCCcEEEEEEeC-CCC
Q 018973          197 PHFSFYKSMEK-------IHEEEG---IGPDQLMGDVLYYGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGL-KHC  265 (348)
Q Consensus       197 Pt~~~~~~g~~-------v~~~~G---~~~~~l~~~v~~~~~~~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a-~wC  265 (348)
                      |++++|+.+..       ...+.|   .+.+.|...+...  ..+-+.++ +.++......     +++.++.|+. +.+
T Consensus        74 p~ivlfk~~~~~~kfde~~~~y~g~~~~~~~~l~~fi~~~--~~Plv~e~-t~~n~~~~~~-----~~~l~~~~~~~d~~  145 (250)
T 3ec3_A           74 GKLVLMQPEKFQSKYEPRMHVMDVQGSTEASAIKDYVVKH--ALPLVGHR-KTSNDAKRYS-----KRPLVVVYYSVDFS  145 (250)
T ss_dssp             SEEEEECCGGGCCTTSCSCEEEECCTTSCHHHHHHHHHHH--SSCTEEEE-CTTTHHHHSC-----SSSEEEEEECCCCS
T ss_pred             CeEEEEecchhhccccccceeccCCCCCCHHHHHHHHHHc--CCCceeec-Cccchhhhhc-----cCccEEEEEecccc
Confidence            99999986422       122332   1122232222111  12233333 4455555442     3555555664 322


Q ss_pred             ---h-hhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCc--cc-eEEEEeCCeEEEEEe-CC-ChHHHHH
Q 018973          266 ---G-PCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVE--VP-TFLFIRDGQIRGRYV-GS-GKGELIG  336 (348)
Q Consensus       266 ---~-~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~--~P-Tl~~~~~G~~v~~~~-G~-~~~~L~~  336 (348)
                         . ........+.+++++++ ++.|+.+|.+++..   .++.||+..  .| .++++........+. +. +.+.|.+
T Consensus       146 ~~~~~~~~~~~~~~~~vAk~~k-ki~F~~~d~~~~~~---~l~~fgl~~~~~~p~~~~~~~~~~ky~~~~~~~t~~~i~~  221 (250)
T 3ec3_A          146 FDYRTATQFWRNKVLEVAKDFP-EYTFAIADEEDYAT---EVKDLGLSESGGDVNAAILDESGKKFAMEPEEFDSDALRE  221 (250)
T ss_dssp             TTTHHHHHHHHHHHHHHHTTCT-TSEEEEEETTTTHH---HHHHTTCSSCSCSCEEEEECTTSCEEECCCCSCCHHHHHH
T ss_pred             cccchhHHHHHHHHHHHHHhhc-ceeEEEEcHHHHHH---HHHHcCCCccCCCcEEEEEcCCCceecCCcccCCHHHHHH
Confidence               3 33556788999999999 89999999988776   788999974  44 666664433344444 44 8999999


Q ss_pred             HHHHHhCCCC
Q 018973          337 EILRYQGVRV  346 (348)
Q Consensus       337 ~l~~~~~~~~  346 (348)
                      |++.++.-++
T Consensus       222 Fv~~~~~Gkl  231 (250)
T 3ec3_A          222 FVMAFKKGKL  231 (250)
T ss_dssp             HHHHHHTTCC
T ss_pred             HHHHHHCCCc
Confidence            9999876554

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=99.18  E-value=5.1e-12  Score=93.54  Aligned_cols=62  Identities=13%  Similarity=0.083  Sum_probs=49.1

Q ss_pred             EEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeeccccc
Q 018973          143 VVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKI  208 (348)
Q Consensus       143 vV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~~v  208 (348)
                      ++.||++||++|+.+.|.++++.++++. +.++.||.|.  +..+++++|||+++||+++  +|+.+
T Consensus         4 ~~~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~gv~~vPt~~i--~g~~~   66 (80)
T 2k8s_A            4 KAIFYHAGCPVCVSAEQAVANAIDPSKYTVEIVHLGTDK--ARIAEAEKAGVKSVPALVI--DGAAF   66 (80)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHHSCTTTEEEEEEETTTCS--STHHHHHHHTCCEEEEEEE--TTEEE
T ss_pred             eEEEeCCCCCchHHHHHHHHHHHHhcCCeEEEEEecCCh--hhHHHHHHcCCCcCCEEEE--CCEEE
Confidence            6789999999999999999999887752 5555555541  1456889999999999877  77754

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.17  E-value=7.3e-11  Score=117.70  Aligned_cols=79  Identities=6%  Similarity=0.074  Sum_probs=67.5

Q ss_pred             CHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeecc
Q 018973          126 SIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSM  205 (348)
Q Consensus       126 s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g  205 (348)
                      +.+.+ +.+++..+++.++.||++||++|+.+.|.+++++.+++++.|.+||+++   .++++++|+|+++||+++  +|
T Consensus       105 ~~~~~-~~i~~~~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~~v~~~~vd~~~---~~~~~~~~~i~svPt~~i--~g  178 (521)
T 1hyu_A          105 AQSLL-EQIRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNPRIKHTAIDGGT---FQNEITERNVMGVPAVFV--NG  178 (521)
T ss_dssp             CHHHH-HHHHHCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCTTEEEEEEETTT---CHHHHHHTTCCSSSEEEE--TT
T ss_pred             CHHHH-HHHHhcCCCcceEEEECCCCcCcHHHHHHHHHHHhHcCceEEEEEechh---hHHHHHHhCCCccCEEEE--CC
Confidence            44444 4445556788999999999999999999999999999999999999998   556999999999999977  88


Q ss_pred             ccccc
Q 018973          206 EKIHE  210 (348)
Q Consensus       206 ~~v~~  210 (348)
                      +.+..
T Consensus       179 ~~~~~  183 (521)
T 1hyu_A          179 KEFGQ  183 (521)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            87754

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=99.15  E-value=2.4e-11  Score=104.83  Aligned_cols=74  Identities=15%  Similarity=0.301  Sum_probs=61.2

Q ss_pred             CCC-EEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCCCc--------------------------hhHHHHH
Q 018973          138 KNK-LVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGDES--------------------------EKTKELC  188 (348)
Q Consensus       138 ~~k-~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d~~--------------------------~~~~~l~  188 (348)
                      +++ +|||+||++||++|+...|.|.++.++|.+  +.|+.|++|..                          +...+++
T Consensus        44 ~gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~  123 (196)
T 2ywi_A           44 KSDAATVIMFICNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQEVA  123 (196)
T ss_dssp             CCSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSCHHH
T ss_pred             CCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCchHHH
Confidence            455 699999999999999999999999999864  99999998521                          1134688


Q ss_pred             HHcCcCCCCeEEEe-ecccccccc
Q 018973          189 EREKIKKVPHFSFY-KSMEKIHEE  211 (348)
Q Consensus       189 ~~~~V~~~Pt~~~~-~~g~~v~~~  211 (348)
                      +.|+|..+|+++++ ++|+.+.+.
T Consensus       124 ~~~~v~~~P~~~lid~~G~i~~~~  147 (196)
T 2ywi_A          124 KAYDAACTPDFYIFDRDLKCVYRG  147 (196)
T ss_dssp             HHHTCCEESEEEEEETTCBEEEEE
T ss_pred             HHhCCCCCCeEEEEcCCCeEEEcc
Confidence            99999999998877 688888763

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=99.15  E-value=1e-10  Score=98.48  Aligned_cols=90  Identities=12%  Similarity=0.268  Sum_probs=72.0

Q ss_pred             CCcEEEEEEeCCCChh-hhhhhhHHHHHHHHhCC----cEEEEEEECCCch----hH---------------------HH
Q 018973          252 DQKLIVLDVGLKHCGP-CVKVYPTVIKLSRQMAG----TVVFARMNGDEND----SC---------------------MQ  301 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~-C~~~~p~l~~la~~~~~----~v~~~~vd~~~~~----~~---------------------~~  301 (348)
                      .+++++|+||++||++ |+.+.|.|.++.+++++    ++.++.|+++...    ..                     .+
T Consensus        34 ~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~d~~~~~~~  113 (172)
T 2k6v_A           34 QDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEAVRE  113 (172)
T ss_dssp             TTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHHHHHHCTTEEEECCCHHHHHH
T ss_pred             CCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEeCCHHHHHH
Confidence            4789999999999997 99999999999999873    5999999987431    11                     24


Q ss_pred             HHHhCCC---------------CccceEEEEeCCeEEEEEeCC---ChHHHHHHHHHH
Q 018973          302 FLRDMNV---------------VEVPTFLFIRDGQIRGRYVGS---GKGELIGEILRY  341 (348)
Q Consensus       302 l~~~~~V---------------~~~PTl~~~~~G~~v~~~~G~---~~~~L~~~l~~~  341 (348)
                      +++.|++               ..+|+++++.+|+++.++.|.   +.++|.+.|+++
T Consensus       114 ~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid~G~i~~~~~g~~~~~~~~l~~~l~~l  171 (172)
T 2k6v_A          114 AAQTFGVFYQKSQYRGPGEYLVDHTATTFVVKEGRLVLLYSPDKAEATDRVVADLQAL  171 (172)
T ss_dssp             HHHHHTCCEEEEEEEETTEEEEEECCCEEEEETTEEEEEECHHHHTCHHHHHHHHHHC
T ss_pred             HHHhcCeEEEeccCCCCCCceEecCCEEEEEECCEEEEEECCCCCCCHHHHHHHHHHh
Confidence            6666664               578976666699999999876   678899888765

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=99.15  E-value=4.3e-11  Score=92.66  Aligned_cols=80  Identities=13%  Similarity=0.235  Sum_probs=64.6

Q ss_pred             CcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECC--CchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCCC
Q 018973          253 QKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGD--ENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSG  330 (348)
Q Consensus       253 ~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~--~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~~  330 (348)
                      +.+++++|+++||++|+.+.+.|.+++    .++.|..+|++  +++   +++++|+ .++|++  +.+|+.+ ...|.+
T Consensus        15 ~~~~v~~f~~~~C~~C~~~~~~L~~l~----~~i~~~~vdi~~~~~~---el~~~~g-~~vP~l--~~~g~~~-~~~g~~   83 (100)
T 1wjk_A           15 ALPVLTLFTKAPCPLCDEAKEVLQPYK----DRFILQEVDITLPENS---TWYERYK-FDIPVF--HLNGQFL-MMHRVN   83 (100)
T ss_dssp             CCCEEEEEECSSCHHHHHHHHHTSTTS----SSSEEEEEETTSSTTH---HHHHHSS-SSCSEE--EESSSEE-EESSCC
T ss_pred             CCCEEEEEeCCCCcchHHHHHHHHHhh----hCCeEEEEECCCcchH---HHHHHHC-CCCCEE--EECCEEE-EecCCC
Confidence            567889999999999999999887654    23889999998  444   4999999 999986  4588875 445569


Q ss_pred             hHHHHHHHHHHhC
Q 018973          331 KGELIGEILRYQG  343 (348)
Q Consensus       331 ~~~L~~~l~~~~~  343 (348)
                      .++|.++|.+++.
T Consensus        84 ~~~l~~~l~~~~~   96 (100)
T 1wjk_A           84 TSKLEKQLRKLSG   96 (100)
T ss_dssp             HHHHHHHHHSSSC
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999987654

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=99.14  E-value=2.4e-11  Score=111.76  Aligned_cols=76  Identities=11%  Similarity=0.116  Sum_probs=55.0

Q ss_pred             HHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCc-hhHHHHHHHcCcCCCCeEEEeecc
Q 018973          127 IEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDES-EKTKELCEREKIKKVPHFSFYKSM  205 (348)
Q Consensus       127 ~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~-~~~~~l~~~~~V~~~Pt~~~~~~g  205 (348)
                      ...+.+.+.+    ..+|+|||+||+||++++|.|++++++++   ++.+|.++. ++.+++|++|+|+++||+++  +|
T Consensus       189 ~~~la~~l~~----~~vV~F~A~WC~~Ck~l~p~le~lA~~l~---~Vd~d~~d~~~~~~~la~~~gI~~vPT~~i--~G  259 (291)
T 3kp9_A          189 AVGLAAHLRQ----IGGTMYGAYWCPHCQDQKELFGAAFDQVP---YVECSPNGPGTPQAQECTEAGITSYPTWII--NG  259 (291)
T ss_dssp             HHHHHHHHHH----TTCEEEECTTCHHHHHHHHHHGGGGGGSC---EEESCSSCSSSCCCHHHHTTTCCSTTEEEE--TT
T ss_pred             HHHHHHHhCC----CCEEEEECCCCHHHHHHHHHHHHHHHHcC---EEEEeecCchhhHHHHHHHcCCcccCeEEE--CC
Confidence            4556666653    23799999999999999999999998774   333332121 22567999999999999655  77


Q ss_pred             ccccccccC
Q 018973          206 EKIHEEEGI  214 (348)
Q Consensus       206 ~~v~~~~G~  214 (348)
                      +.   +.|.
T Consensus       260 ~~---~~G~  265 (291)
T 3kp9_A          260 RT---YTGV  265 (291)
T ss_dssp             EE---EESC
T ss_pred             EE---ecCC
Confidence            64   5563

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=99.14  E-value=4.1e-11  Score=113.52  Aligned_cols=78  Identities=17%  Similarity=0.186  Sum_probs=66.1

Q ss_pred             cCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCCCc------------------------hhHHHHHHH
Q 018973          137 AKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGDES------------------------EKTKELCER  190 (348)
Q Consensus       137 ~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d~~------------------------~~~~~l~~~  190 (348)
                      .++++|||+||++||++|+.+.|.|.+++++|++  +.|+.|++|+.                        +...++++.
T Consensus        80 l~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~~~l~~~  159 (352)
T 2hyx_A           80 LRGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYATWTN  159 (352)
T ss_dssp             GTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTTSHHHHH
T ss_pred             hCCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcCCeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCcHHHHHH
Confidence            3689999999999999999999999999999864  99999987631                        112468899


Q ss_pred             cCcCCCCeEEEe-eccccccccccC
Q 018973          191 EKIKKVPHFSFY-KSMEKIHEEEGI  214 (348)
Q Consensus       191 ~~V~~~Pt~~~~-~~g~~v~~~~G~  214 (348)
                      |+|..+|+++++ ++|+++.++.|.
T Consensus       160 ygV~~~Pt~~lID~~G~Iv~~~~G~  184 (352)
T 2hyx_A          160 YRNRYWPAEYLIDATGTVRHIKFGE  184 (352)
T ss_dssp             TTCCEESEEEEECTTSBEEEEEESB
T ss_pred             cCCCccCEEEEEeCCCeEEEEEcCC
Confidence            999999997766 789999988884

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=99.13  E-value=1.4e-10  Score=99.22  Aligned_cols=90  Identities=17%  Similarity=0.232  Sum_probs=70.3

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCc-EEEEEEECCC--------chhHHHHHHhCC---------------
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGT-VVFARMNGDE--------NDSCMQFLRDMN---------------  307 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~~~--------~~~~~~l~~~~~---------------  307 (348)
                      .+++++|+||++||++|+.+.|.|.++.++++++ +.++.|+++.        .+..++++++++               
T Consensus        46 ~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~  125 (183)
T 2obi_A           46 RGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDD  125 (183)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHTTTCCSEEBCCCCCSSTT
T ss_pred             CCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcCCeEEEEEECCCCCCCCCCCHHHHHHHHHHcCCCceEEeeeccCCcc
Confidence            4789999999999999999999999999999754 9999998763        223444555442               


Q ss_pred             ---------------------CCccce-EEEEeCCeEEEEEeCC-ChHHHHHHHHHH
Q 018973          308 ---------------------VVEVPT-FLFIRDGQIRGRYVGS-GKGELIGEILRY  341 (348)
Q Consensus       308 ---------------------V~~~PT-l~~~~~G~~v~~~~G~-~~~~L~~~l~~~  341 (348)
                                           |..+|+ +++.++|+++.++.|. +.++|.+.|+++
T Consensus       126 ~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l  182 (183)
T 2obi_A          126 AHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHY  182 (183)
T ss_dssp             SCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSCEEEEECTTSCTHHHHTTSGGG
T ss_pred             hhHHHHHhhccCCCCCcccccccccceEEEECCCCCEEEEeCCCCCHHHHHHHHHHh
Confidence                                 223586 5555899999999998 888888877664

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=99.13  E-value=1.8e-10  Score=98.92  Aligned_cols=91  Identities=16%  Similarity=0.172  Sum_probs=71.9

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCc-EEEEEEECCC--------chhHHHHHHhCCCC-------------
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGT-VVFARMNGDE--------NDSCMQFLRDMNVV-------------  309 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~~~--------~~~~~~l~~~~~V~-------------  309 (348)
                      .+++++|+||++||++|+...|.|.++.++++++ +.++.|+++.        .+..+++++++++.             
T Consensus        48 ~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~  127 (185)
T 2gs3_A           48 RGFVCIVTNVASQGGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDD  127 (185)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHTTCCSEEBCCCBSSSTT
T ss_pred             CCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcCCeEEEEEECcccCCCCCCCHHHHHHHHHHcCCCCeeeeeeccCChh
Confidence            4789999999999999999999999999999754 9999998763        12345566655431             


Q ss_pred             -----------------------ccce-EEEEeCCeEEEEEeCC-ChHHHHHHHHHHh
Q 018973          310 -----------------------EVPT-FLFIRDGQIRGRYVGS-GKGELIGEILRYQ  342 (348)
Q Consensus       310 -----------------------~~PT-l~~~~~G~~v~~~~G~-~~~~L~~~l~~~~  342 (348)
                                             .+|+ +++.++|+++.++.|. +.++|.+.|++++
T Consensus       128 ~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~lL  185 (185)
T 2gs3_A          128 AHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHYF  185 (185)
T ss_dssp             BCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECTTSCEEEEECTTSCGGGGGGGHHHHC
T ss_pred             hhHHHHHHHhhcccccccCCcccccceEEEECCCCCEEEeeCCCCCHHHHHHHHHHhC
Confidence                                   1475 5666899999999998 8888888887753

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=99.13  E-value=1.9e-11  Score=96.61  Aligned_cols=82  Identities=13%  Similarity=0.162  Sum_probs=60.1

Q ss_pred             CcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch--hHHHHHHhCCCCccceEEEEeCCeEEEEEeCC-
Q 018973          253 QKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND--SCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS-  329 (348)
Q Consensus       253 ~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~--~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~-  329 (348)
                      ++++++ ||++||++|+.+.|.|.++...    +.++.+|.+...  ...+++++|++.++||+  |.+|+.+..+.|. 
T Consensus        19 ~~~vv~-f~a~~C~~C~~~~~~l~~~~~~----~~~v~v~~~~~~~~~~~~l~~~~~v~~~Pt~--~~~g~~v~~~~~~~   91 (116)
T 2e7p_A           19 SAPVVV-FSKTYCGYCNRVKQLLTQVGAS----YKVVELDELSDGSQLQSALAHWTGRGTVPNV--FIGGKQIGGCDTVV   91 (116)
T ss_dssp             SSSEEE-EECTTCHHHHHHHHHHHHHTCC----CEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EETTEEEECHHHHH
T ss_pred             CCCEEE-EECCCChhHHHHHHHHHHcCCC----eEEEEccCCCChHHHHHHHHHHhCCCCcCEE--EECCEEECChHHHH
Confidence            345555 9999999999999998887533    456666655441  01248899999999999  5699988776654 


Q ss_pred             ---ChHHHHHHHHHH
Q 018973          330 ---GKGELIGEILRY  341 (348)
Q Consensus       330 ---~~~~L~~~l~~~  341 (348)
                         +.++|.++|+++
T Consensus        92 ~~~~~~~l~~~l~~~  106 (116)
T 2e7p_A           92 EKHQRNELLPLLQDA  106 (116)
T ss_dssp             HHHHTTCHHHHHHHT
T ss_pred             HHHhCChHHHHHHHc
Confidence               456788888764

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=99.13  E-value=2.6e-11  Score=93.88  Aligned_cols=75  Identities=12%  Similarity=0.038  Sum_probs=57.1

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeeccccccccccCCCC
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPD  217 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~~v~~~~G~~~~  217 (348)
                      .+.++|++|+++||++|+.+.+.|+++++   ++.|..||+++. +..+++++|| +.+|++  +.+|+.+ .+.|.+.+
T Consensus        14 ~~~~~v~~f~~~~C~~C~~~~~~L~~l~~---~i~~~~vdi~~~-~~~el~~~~g-~~vP~l--~~~g~~~-~~~g~~~~   85 (100)
T 1wjk_A           14 RALPVLTLFTKAPCPLCDEAKEVLQPYKD---RFILQEVDITLP-ENSTWYERYK-FDIPVF--HLNGQFL-MMHRVNTS   85 (100)
T ss_dssp             CCCCEEEEEECSSCHHHHHHHHHTSTTSS---SSEEEEEETTSS-TTHHHHHHSS-SSCSEE--EESSSEE-EESSCCHH
T ss_pred             CCCCEEEEEeCCCCcchHHHHHHHHHhhh---CCeEEEEECCCc-chHHHHHHHC-CCCCEE--EECCEEE-EecCCCHH
Confidence            35678999999999999999999988754   389999999932 2467999999 999986  4577764 34444444


Q ss_pred             ccc
Q 018973          218 QLM  220 (348)
Q Consensus       218 ~l~  220 (348)
                      .|.
T Consensus        86 ~l~   88 (100)
T 1wjk_A           86 KLE   88 (100)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.13  E-value=2.7e-10  Score=95.42  Aligned_cols=89  Identities=16%  Similarity=0.090  Sum_probs=68.5

Q ss_pred             CcE-EEEEEe-CCCChhhhhhhhHHHHHHHHhCCc-EEEEEEECCCchhH------------------HHHHHhCCCCc-
Q 018973          253 QKL-IVLDVG-LKHCGPCVKVYPTVIKLSRQMAGT-VVFARMNGDENDSC------------------MQFLRDMNVVE-  310 (348)
Q Consensus       253 ~k~-vvV~F~-a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~~~~~~~------------------~~l~~~~~V~~-  310 (348)
                      ++. ++|+|| ++||++|+...|.|.++.++++++ +.++.|+.|..+..                  .++++.|++.+ 
T Consensus        28 gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  107 (161)
T 3drn_A           28 GKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDKKIRELYGAKGF  107 (161)
T ss_dssp             TTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCCCS
T ss_pred             CCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHcCCCCc
Confidence            555 999999 999999999999999999999654 99999998742211                  23778899999 


Q ss_pred             ---cceEEEE-eCCeEEEEEeCC--C---hHHHHHHHHHH
Q 018973          311 ---VPTFLFI-RDGQIRGRYVGS--G---KGELIGEILRY  341 (348)
Q Consensus       311 ---~PTl~~~-~~G~~v~~~~G~--~---~~~L~~~l~~~  341 (348)
                         +|+++++ ++|+++.++.|.  .   .+++.+.|+++
T Consensus       108 ~~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~il~~l~~l  147 (161)
T 3drn_A          108 ILPARITFVIDKKGIIRHIYNSQMNPANHVNEALKALKQI  147 (161)
T ss_dssp             SSCCCEEEEECTTSBEEEEEECSSCTTHHHHHHHHHHHHH
T ss_pred             CcccceEEEECCCCEEEEEEecCCCCCcCHHHHHHHHHHh
Confidence               9965555 799999999993  3   34455555443

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=99.12  E-value=4.5e-11  Score=88.35  Aligned_cols=71  Identities=20%  Similarity=0.200  Sum_probs=52.9

Q ss_pred             EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECC-CchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCC--ChHH
Q 018973          257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGD-ENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS--GKGE  333 (348)
Q Consensus       257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~-~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~--~~~~  333 (348)
                      ++.||++||++|+.+.+.++++.++++..+.++.+|.+ +..+   ++++||+.++||+++  +|+.+.  .|.  +.++
T Consensus         4 ~~~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~gv~~vPt~~i--~g~~~~--~G~~~~~~~   76 (80)
T 2k8s_A            4 KAIFYHAGCPVCVSAEQAVANAIDPSKYTVEIVHLGTDKARIA---EAEKAGVKSVPALVI--DGAAFH--INFGAGIDD   76 (80)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHHSCTTTEEEEEEETTTCSSTHH---HHHHHTCCEEEEEEE--TTEEEE--EEEEEEHHH
T ss_pred             eEEEeCCCCCchHHHHHHHHHHHHhcCCeEEEEEecCChhhHH---HHHHcCCCcCCEEEE--CCEEEE--eccCcCHHH
Confidence            67899999999999999999988776434555555543 2333   889999999999877  888653  343  5555


Q ss_pred             H
Q 018973          334 L  334 (348)
Q Consensus       334 L  334 (348)
                      |
T Consensus        77 l   77 (80)
T 2k8s_A           77 L   77 (80)
T ss_dssp             H
T ss_pred             h
Confidence            5

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=98.72  E-value=5.9e-12  Score=102.71  Aligned_cols=77  Identities=13%  Similarity=0.347  Sum_probs=62.3

Q ss_pred             CCc-EEEEEEeCCCChhhhhhhhHHHHHHHHhC---CcEEEEEEECCCchh----------------------HHHHHHh
Q 018973          252 DQK-LIVLDVGLKHCGPCVKVYPTVIKLSRQMA---GTVVFARMNGDENDS----------------------CMQFLRD  305 (348)
Q Consensus       252 ~~k-~vvV~F~a~wC~~C~~~~p~l~~la~~~~---~~v~~~~vd~~~~~~----------------------~~~l~~~  305 (348)
                      .++ +++|+||++||++|+.+.|.|.+++++++   .++.++.|++++.++                      ..+++++
T Consensus        24 ~gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (143)
T 2lus_A           24 KDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAK  103 (143)
Confidence            356 99999999999999999999999998883   358888888775421                      1248889


Q ss_pred             CCCCccceEEEEe-CCeEEEEEeC
Q 018973          306 MNVVEVPTFLFIR-DGQIRGRYVG  328 (348)
Q Consensus       306 ~~V~~~PTl~~~~-~G~~v~~~~G  328 (348)
                      |+|.++||++++. +|+++.+..+
T Consensus       104 ~~v~~~P~~~lid~~G~i~~~~~~  127 (143)
T 2lus_A          104 YGITGIPALVIVKKDGTLISMNGR  127 (143)
Confidence            9999999987775 9999887443

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=99.12  E-value=3.9e-11  Score=101.56  Aligned_cols=75  Identities=17%  Similarity=0.213  Sum_probs=56.1

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCC--------CchhHHHHH-------------------
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGD--------ESEKTKELC-------------------  188 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d--------~~~~~~~l~-------------------  188 (348)
                      ++++|||+|||+||++|+ ..|.|.++.++|.+  +.++.|++|        ..+..++++                   
T Consensus        31 ~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~~~~~~p~~~d~d~~~~  109 (171)
T 3cmi_A           31 KGKVVLIVNVASKCGFTP-QYKELEALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNGG  109 (171)
T ss_dssp             TTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEEECSCC------------------CCCSCBBCCCBSSST
T ss_pred             CCCEEEEEEEecCCCcch-hHHHHHHHHHHhccCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCceEEeeccCCCc
Confidence            689999999999999999 99999999999864  899999874        111223333                   


Q ss_pred             -----------HHcCcCCCC------e-EEEeecccccccccc
Q 018973          189 -----------EREKIKKVP------H-FSFYKSMEKIHEEEG  213 (348)
Q Consensus       189 -----------~~~~V~~~P------t-~~~~~~g~~v~~~~G  213 (348)
                                 +.|+|.++|      + +++.++|+.+.++.|
T Consensus       110 ~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g  152 (171)
T 3cmi_A          110 NEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYERYSS  152 (171)
T ss_dssp             TBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCEEEEECT
T ss_pred             cchHHHHHHHhccCCcCCCCcccccceEEEECCCCCEEEEeCC
Confidence                       246788899      5 556688998888777

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=99.11  E-value=7.5e-11  Score=98.46  Aligned_cols=77  Identities=10%  Similarity=0.135  Sum_probs=63.0

Q ss_pred             CCCEEEEEEeCCCCHH-HHhhhhHHHHHHHHcC------CcEEEEEeCCCc-------------------------hhHH
Q 018973          138 KNKLVVVEFAASRSLD-SSKIYPFMVDLSRQCN------DVEFILVMGDES-------------------------EKTK  185 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~-C~~~~p~l~~la~~~~------~v~f~~vd~d~~-------------------------~~~~  185 (348)
                      +++++||+||++||++ |+...|.|.++.++++      ++.++.|++|..                         +...
T Consensus        22 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~  101 (164)
T 2ggt_A           22 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVD  101 (164)
T ss_dssp             TTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHTTCSSCEEEECCHHHHH
T ss_pred             CCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHH
Confidence            6899999999999998 9999999999998873      689999988752                         2234


Q ss_pred             HHHHHcCcCCCC----------------eEEEeeccccccccccC
Q 018973          186 ELCEREKIKKVP----------------HFSFYKSMEKIHEEEGI  214 (348)
Q Consensus       186 ~l~~~~~V~~~P----------------t~~~~~~g~~v~~~~G~  214 (348)
                      ++++.|||..+|                ++++.++|+.+..+.|.
T Consensus       102 ~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~  146 (164)
T 2ggt_A          102 QVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQN  146 (164)
T ss_dssp             HHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEEEETT
T ss_pred             HHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEEeCCC
Confidence            588899999999                45566789988877663

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=99.11  E-value=1.1e-10  Score=98.21  Aligned_cols=77  Identities=10%  Similarity=0.082  Sum_probs=63.2

Q ss_pred             CCCEEEEEEeCCCCHH-HHhhhhHHHHHHHHc------CCcEEEEEeCCCc-------------------------hhHH
Q 018973          138 KNKLVVVEFAASRSLD-SSKIYPFMVDLSRQC------NDVEFILVMGDES-------------------------EKTK  185 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~-C~~~~p~l~~la~~~------~~v~f~~vd~d~~-------------------------~~~~  185 (348)
                      ++++|||+||++||++ |+...|.|.++.+++      .++.++.|++|..                         +...
T Consensus        25 ~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~  104 (171)
T 2rli_A           25 RGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVA  104 (171)
T ss_dssp             TTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTTCTTCCEEECCHHHHH
T ss_pred             CCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHH
Confidence            5899999999999999 999999999999988      4699999998731                         1123


Q ss_pred             HHHHHcCcCCCC---------------e-EEEeeccccccccccC
Q 018973          186 ELCEREKIKKVP---------------H-FSFYKSMEKIHEEEGI  214 (348)
Q Consensus       186 ~l~~~~~V~~~P---------------t-~~~~~~g~~v~~~~G~  214 (348)
                      ++++.|+|..+|               + +++.++|+.+..+.|.
T Consensus       105 ~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~  149 (171)
T 2rli_A          105 QASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRS  149 (171)
T ss_dssp             HHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEESS
T ss_pred             HHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECCC
Confidence            688899999888               5 5555789998877663

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=99.10  E-value=7.5e-11  Score=87.74  Aligned_cols=65  Identities=17%  Similarity=0.254  Sum_probs=54.7

Q ss_pred             EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCch-hHHHHHHHcC--cCCCCeEEEeecccccc
Q 018973          143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESE-KTKELCEREK--IKKVPHFSFYKSMEKIH  209 (348)
Q Consensus       143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~-~~~~l~~~~~--V~~~Pt~~~~~~g~~v~  209 (348)
                      |+.|+++||++|+.+.+.|++++++++++.|..+|+++.+ ...++.+++|  +..+|++  |.+|+.+.
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~i--~~~g~~i~   70 (85)
T 1ego_A            3 TVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQI--FVDQQHIG   70 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHSSCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEE--EETTEEEE
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHhcCCCceEEEEecccChHHHHHHHHHhCCCCceeCeE--EECCEEEE
Confidence            6789999999999999999999999889999999987632 1246999999  9999998  34777654

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=99.10  E-value=9.4e-11  Score=98.65  Aligned_cols=77  Identities=16%  Similarity=0.105  Sum_probs=62.1

Q ss_pred             CCCEEEEEEeCCCCHH-HHhhhhHHHHHHHHcC-----CcEEEEEeCCCc----hhH---------------------HH
Q 018973          138 KNKLVVVEFAASRSLD-SSKIYPFMVDLSRQCN-----DVEFILVMGDES----EKT---------------------KE  186 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~-C~~~~p~l~~la~~~~-----~v~f~~vd~d~~----~~~---------------------~~  186 (348)
                      ++++|||+||++||++ |+...|.|.++.++++     ++.|+.|++|..    +..                     .+
T Consensus        34 ~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~d~~~~~~~  113 (172)
T 2k6v_A           34 QDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEAVRE  113 (172)
T ss_dssp             TTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHHHHHHCTTEEEECCCHHHHHH
T ss_pred             CCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEeCCHHHHHH
Confidence            6899999999999997 9999999999999987     699999998742    111                     35


Q ss_pred             HHHHcC---------------cCCCCeEEEeeccccccccccC
Q 018973          187 LCEREK---------------IKKVPHFSFYKSMEKIHEEEGI  214 (348)
Q Consensus       187 l~~~~~---------------V~~~Pt~~~~~~g~~v~~~~G~  214 (348)
                      +++.|+               |..+|+++++.+|+.+..+.|.
T Consensus       114 ~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid~G~i~~~~~g~  156 (172)
T 2k6v_A          114 AAQTFGVFYQKSQYRGPGEYLVDHTATTFVVKEGRLVLLYSPD  156 (172)
T ss_dssp             HHHHHTCCEEEEEEEETTEEEEEECCCEEEEETTEEEEEECHH
T ss_pred             HHHhcCeEEEeccCCCCCCceEecCCEEEEEECCEEEEEECCC
Confidence            666665               4678998877788888877663

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=99.09  E-value=1.4e-10  Score=97.40  Aligned_cols=42  Identities=21%  Similarity=0.257  Sum_probs=39.1

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCC
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGD  179 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d  179 (348)
                      ++++|||+||++||++|+...|.|.+++++|++  +.++.|++|
T Consensus        31 ~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d   74 (170)
T 2p5q_A           31 KGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQGLEILAFPCN   74 (170)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCCEEEEEEEeccCCccHHHHHHHHHHHHHhccCCEEEEEEECC
Confidence            689999999999999999999999999999864  999999986

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=99.09  E-value=1.8e-10  Score=98.34  Aligned_cols=77  Identities=13%  Similarity=0.138  Sum_probs=61.0

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCCC--------chhHHHHHHH-cCcC------------
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGDE--------SEKTKELCER-EKIK------------  194 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d~--------~~~~~~l~~~-~~V~------------  194 (348)
                      ++++|||+|||+||++|+...|.|.+++++|++  +.++.|++|.        .++.++++++ +++.            
T Consensus        37 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~  116 (180)
T 3kij_A           37 KGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGS  116 (180)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSST
T ss_pred             CCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCeEEEEEECCccccCCCCCHHHHHHHHHHhcCCCCceeeeeeccCc
Confidence            689999999999999999999999999999875  8999998653        3345667777 6643            


Q ss_pred             --------------CCC-----eEEEeeccccccccccC
Q 018973          195 --------------KVP-----HFSFYKSMEKIHEEEGI  214 (348)
Q Consensus       195 --------------~~P-----t~~~~~~g~~v~~~~G~  214 (348)
                                    .+|     ++++.++|+.+.++.|.
T Consensus       117 ~~~~~~~~~~~~~~~~p~~~~~~~lid~~G~i~~~~~g~  155 (180)
T 3kij_A          117 EGEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPE  155 (180)
T ss_dssp             TCCHHHHHHHHHHTCCCSSTTCEEEECTTSCEEEEECTT
T ss_pred             cccHHHHHHHhcCCCCccccceEEEECCCCCEEEEECCC
Confidence                          145     46677788888877774

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=99.08  E-value=1.4e-10  Score=100.11  Aligned_cols=42  Identities=12%  Similarity=0.060  Sum_probs=39.3

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCC
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGD  179 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d  179 (348)
                      ++++|||+||++||++|+...|.|.++.++|++  +.++.|++|
T Consensus        47 ~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d   90 (190)
T 2vup_A           47 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCN   90 (190)
T ss_dssp             TTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTCEEEEEECC
T ss_pred             CCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcCCeEEEEEEcC
Confidence            689999999999999999999999999999864  999999987

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=99.06  E-value=1.3e-10  Score=102.67  Aligned_cols=72  Identities=11%  Similarity=0.245  Sum_probs=60.2

Q ss_pred             CCC-EEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCCCc--------------------------hhHHHHH
Q 018973          138 KNK-LVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGDES--------------------------EKTKELC  188 (348)
Q Consensus       138 ~~k-~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d~~--------------------------~~~~~l~  188 (348)
                      +++ +|||+||++||++|+...|.|++++++|++  +.|+.|++|+.                          +...+++
T Consensus        57 ~gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~  136 (218)
T 3u5r_E           57 KDSPALLVAFISNRCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQSVA  136 (218)
T ss_dssp             TTCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECTTCHHH
T ss_pred             CCCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEECCccHHH
Confidence            466 699999999999999999999999999965  99999998521                          1134689


Q ss_pred             HHcCcCCCCeEEEe-ecccccc
Q 018973          189 EREKIKKVPHFSFY-KSMEKIH  209 (348)
Q Consensus       189 ~~~~V~~~Pt~~~~-~~g~~v~  209 (348)
                      +.|+|..+|+++++ ++|+.+.
T Consensus       137 ~~~~v~~~P~~~liD~~G~i~~  158 (218)
T 3u5r_E          137 KAYGAACTPDFFLYDRERRLVY  158 (218)
T ss_dssp             HHHTCCEESEEEEECTTCBEEE
T ss_pred             HHcCCCCCCeEEEECCCCcEEE
Confidence            99999999998888 6787763

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=99.06  E-value=1.8e-10  Score=101.20  Aligned_cols=42  Identities=19%  Similarity=0.226  Sum_probs=39.0

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCC
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGD  179 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d  179 (348)
                      ++++|||+|||+||++|+...|.|++++++|.+  +.++.|++|
T Consensus        46 ~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~g~~vv~v~~d   89 (208)
T 2f8a_A           46 RGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCN   89 (208)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHccCCCeEEEEEECC
Confidence            689999999999999999999999999999864  899999986

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=99.06  E-value=4.3e-10  Score=96.52  Aligned_cols=91  Identities=16%  Similarity=0.140  Sum_probs=74.6

Q ss_pred             CCcEEEEEEe-CCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchh----------------------HHHHHHhCC
Q 018973          252 DQKLIVLDVG-LKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDS----------------------CMQFLRDMN  307 (348)
Q Consensus       252 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~----------------------~~~l~~~~~  307 (348)
                      .+++++|+|| ++||++|..+.|.|.++.+++++ ++.++.|+.+....                      ..++++.|+
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  109 (187)
T 1we0_A           30 KGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFD  109 (187)
T ss_dssp             SSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTT
T ss_pred             CCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHHhccccCCCceEEECCchHHHHHhC
Confidence            4789999999 99999999999999999999864 49999999875211                      124788899


Q ss_pred             CC------ccceEEEE-eCCeEEEEEeCC-----ChHHHHHHHHHHh
Q 018973          308 VV------EVPTFLFI-RDGQIRGRYVGS-----GKGELIGEILRYQ  342 (348)
Q Consensus       308 V~------~~PTl~~~-~~G~~v~~~~G~-----~~~~L~~~l~~~~  342 (348)
                      +.      .+|+++++ ++|+++.++.|.     +.++|.+.|+++.
T Consensus       110 v~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  156 (187)
T 1we0_A          110 VLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAAQ  156 (187)
T ss_dssp             CEETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHHHHH
T ss_pred             CCcCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence            98      89987777 799999998875     4778888888764

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.05  E-value=1.7e-10  Score=96.68  Aligned_cols=76  Identities=20%  Similarity=0.038  Sum_probs=63.2

Q ss_pred             CCCE-EEEEEe-CCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCCCch------------------hHHHHHHHcCcCC
Q 018973          138 KNKL-VVVEFA-ASRSLDSSKIYPFMVDLSRQCND--VEFILVMGDESE------------------KTKELCEREKIKK  195 (348)
Q Consensus       138 ~~k~-vvV~F~-a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d~~~------------------~~~~l~~~~~V~~  195 (348)
                      +++. |||+|| ++||++|+...|.|.+++++|++  +.++.|+.|..+                  ...++++.|+|.+
T Consensus        27 ~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  106 (161)
T 3drn_A           27 IGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDKKIRELYGAKG  106 (161)
T ss_dssp             TTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCCC
T ss_pred             cCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHcCCCC
Confidence            4665 999999 99999999999999999999854  999999988421                  1346888999999


Q ss_pred             ----CCeEEEe-ecccccccccc
Q 018973          196 ----VPHFSFY-KSMEKIHEEEG  213 (348)
Q Consensus       196 ----~Pt~~~~-~~g~~v~~~~G  213 (348)
                          +|+++++ ++|+.+..+.|
T Consensus       107 ~~~~~P~~~lid~~G~i~~~~~g  129 (161)
T 3drn_A          107 FILPARITFVIDKKGIIRHIYNS  129 (161)
T ss_dssp             SSSCCCEEEEECTTSBEEEEEEC
T ss_pred             cCcccceEEEECCCCEEEEEEec
Confidence                9986666 68999888877

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=99.05  E-value=3e-10  Score=97.15  Aligned_cols=42  Identities=17%  Similarity=0.240  Sum_probs=39.0

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCC
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGD  179 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d  179 (348)
                      ++++|||+||++||++|+...|.|.+++++|++  +.++.|++|
T Consensus        46 ~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d   89 (183)
T 2obi_A           46 RGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRILAFPCN   89 (183)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcCCeEEEEEECC
Confidence            689999999999999999999999999999864  999999886

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=99.04  E-value=2.2e-10  Score=95.50  Aligned_cols=77  Identities=9%  Similarity=-0.033  Sum_probs=63.6

Q ss_pred             CCC-EEEEEEe-CCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchh--------------------HHHHHHHcCc
Q 018973          138 KNK-LVVVEFA-ASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEK--------------------TKELCEREKI  193 (348)
Q Consensus       138 ~~k-~vvV~F~-a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~--------------------~~~l~~~~~V  193 (348)
                      +++ ++||+|| ++||++|+...|.|.++++++.  ++.++.|++|..+.                    ..++++.|+|
T Consensus        34 ~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v  113 (160)
T 1xvw_A           34 RGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGV  113 (160)
T ss_dssp             TTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTTC
T ss_pred             cCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHhcCCCceEEecCCcChHHHHHcCC
Confidence            466 9999998 9999999999999999999985  49999999875221                    3468889999


Q ss_pred             C----CCC---eEEEeeccccccccccC
Q 018973          194 K----KVP---HFSFYKSMEKIHEEEGI  214 (348)
Q Consensus       194 ~----~~P---t~~~~~~g~~v~~~~G~  214 (348)
                      .    ++|   ++++.++|+.+..+.|.
T Consensus       114 ~~~~~~~p~~~~~lid~~G~i~~~~~g~  141 (160)
T 1xvw_A          114 FNEQAGIANRGTFVVDRSGIIRFAEMKQ  141 (160)
T ss_dssp             EETTTTEECSEEEEECTTSBEEEEEECC
T ss_pred             ccccCCCeeeeEEEECCCCeEEEEEecC
Confidence            8    899   46666789988887774

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.04  E-value=8.1e-10  Score=95.57  Aligned_cols=91  Identities=11%  Similarity=0.038  Sum_probs=75.0

Q ss_pred             CCcEEEEEEe-CCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchh----------------------HHHHHHhCC
Q 018973          252 DQKLIVLDVG-LKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDS----------------------CMQFLRDMN  307 (348)
Q Consensus       252 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~----------------------~~~l~~~~~  307 (348)
                      .+++++|+|| ++||++|+...|.|.++.+++++ ++.++.|+.+..+.                      ..++++.|+
T Consensus        44 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  123 (195)
T 2bmx_A           44 PGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAG  123 (195)
T ss_dssp             TTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHT
T ss_pred             CCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhccccCCceeEEeCCchHHHHHhC
Confidence            4789999999 99999999999999999999865 59999999875221                      124777889


Q ss_pred             CC-----ccceEEEE-eCCeEEEEEeCC-----ChHHHHHHHHHHh
Q 018973          308 VV-----EVPTFLFI-RDGQIRGRYVGS-----GKGELIGEILRYQ  342 (348)
Q Consensus       308 V~-----~~PTl~~~-~~G~~v~~~~G~-----~~~~L~~~l~~~~  342 (348)
                      +.     .+|+++++ ++|+++.++.|.     +.++|.+.|+++.
T Consensus       124 v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  169 (195)
T 2bmx_A          124 VLNADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDALQ  169 (195)
T ss_dssp             CBCTTSSBCEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             CcccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence            99     99987666 799999998775     4788998888775

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=99.03  E-value=5.3e-10  Score=93.09  Aligned_cols=88  Identities=14%  Similarity=0.101  Sum_probs=69.2

Q ss_pred             Cc-EEEEEEe-CCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchh--------------------HHHHHHhCCCC
Q 018973          253 QK-LIVLDVG-LKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDS--------------------CMQFLRDMNVV  309 (348)
Q Consensus       253 ~k-~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~--------------------~~~l~~~~~V~  309 (348)
                      ++ +++|+|| ++||++|+.+.|.|.++.+++++ ++.++.|+.+..+.                    ..++++.|++.
T Consensus        35 gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~  114 (160)
T 1xvw_A           35 GAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVF  114 (160)
T ss_dssp             TTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTTCE
T ss_pred             CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHhcCCCceEEecCCcChHHHHHcCCc
Confidence            55 9999998 99999999999999999999864 59999998874211                    23488899998


Q ss_pred             ----ccc---eEEEEeCCeEEEEEeCC-C----hHHHHHHHHH
Q 018973          310 ----EVP---TFLFIRDGQIRGRYVGS-G----KGELIGEILR  340 (348)
Q Consensus       310 ----~~P---Tl~~~~~G~~v~~~~G~-~----~~~L~~~l~~  340 (348)
                          ++|   ++++.++|+++.++.|. +    .+++.+.|++
T Consensus       115 ~~~~~~p~~~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~  157 (160)
T 1xvw_A          115 NEQAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAA  157 (160)
T ss_dssp             ETTTTEECSEEEEECTTSBEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred             cccCCCeeeeEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence                999   56666899999999887 3    3455555554

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=99.03  E-value=9.3e-11  Score=107.80  Aligned_cols=82  Identities=12%  Similarity=0.154  Sum_probs=61.2

Q ss_pred             hhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEEC----CCchhHHHHHHhCCCCccceEE
Q 018973          240 EDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNG----DENDSCMQFLRDMNVVEVPTFL  315 (348)
Q Consensus       240 ~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~----~~~~~~~~l~~~~~V~~~PTl~  315 (348)
                      ..+.+.+.+      ..+++||++||++|+++.|.+++++++++    ++.+|.    +++++   ++++|+|+++||++
T Consensus       190 ~~la~~l~~------~~vV~F~A~WC~~Ck~l~p~le~lA~~l~----~Vd~d~~d~~~~~~~---la~~~gI~~vPT~~  256 (291)
T 3kp9_A          190 VGLAAHLRQ------IGGTMYGAYWCPHCQDQKELFGAAFDQVP----YVECSPNGPGTPQAQ---ECTEAGITSYPTWI  256 (291)
T ss_dssp             HHHHHHHHH------TTCEEEECTTCHHHHHHHHHHGGGGGGSC----EEESCSSCSSSCCCH---HHHTTTCCSTTEEE
T ss_pred             HHHHHHhCC------CCEEEEECCCCHHHHHHHHHHHHHHHHcC----EEEEeecCchhhHHH---HHHHcCCcccCeEE
Confidence            445555543      23689999999999999999999987762    333331    22444   99999999999965


Q ss_pred             EEeCCeEEEEEeCC-ChHHHHHHHH
Q 018973          316 FIRDGQIRGRYVGS-GKGELIGEIL  339 (348)
Q Consensus       316 ~~~~G~~v~~~~G~-~~~~L~~~l~  339 (348)
                      +  +|+.   +.|. +.++|.+++.
T Consensus       257 i--~G~~---~~G~~~~~~L~~~l~  276 (291)
T 3kp9_A          257 I--NGRT---YTGVRSLEALAVASG  276 (291)
T ss_dssp             E--TTEE---EESCCCHHHHHHHTC
T ss_pred             E--CCEE---ecCCCCHHHHHHHHC
Confidence            5  8873   7898 8888888764

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=99.03  E-value=4.7e-10  Score=97.28  Aligned_cols=91  Identities=11%  Similarity=0.107  Sum_probs=73.3

Q ss_pred             CCcEEEEEEe-CCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchh-------------------------HHHHHH
Q 018973          252 DQKLIVLDVG-LKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDS-------------------------CMQFLR  304 (348)
Q Consensus       252 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~-------------------------~~~l~~  304 (348)
                      .+++++|+|| ++||++|+.+.|.|.++.+++++ ++.++.|+.+..+.                         ..++++
T Consensus        32 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  111 (198)
T 1zof_A           32 GKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISR  111 (198)
T ss_dssp             CSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHH
T ss_pred             CCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhhhhcccccCceeEEEECCchHHHH
Confidence            3689999999 99999999999999999998854 49999999874211                         124888


Q ss_pred             hCCCC-----ccceEEEE-eCCeEEEEEeCC-----ChHHHHHHHHHHh
Q 018973          305 DMNVV-----EVPTFLFI-RDGQIRGRYVGS-----GKGELIGEILRYQ  342 (348)
Q Consensus       305 ~~~V~-----~~PTl~~~-~~G~~v~~~~G~-----~~~~L~~~l~~~~  342 (348)
                      .|++.     .+|+++++ ++|+++.++.|.     +.++|.+.|+++.
T Consensus       112 ~~~v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  160 (198)
T 1zof_A          112 DYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALL  160 (198)
T ss_dssp             HTTCEETTTEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHHHH
T ss_pred             HhCCcccCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            89999     99965555 799999998875     4678888888764

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=99.03  E-value=3.5e-10  Score=94.83  Aligned_cols=43  Identities=7%  Similarity=0.169  Sum_probs=39.4

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCCC
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGDE  180 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d~  180 (348)
                      ++++|||+||++||++|+...|.|.++.++|++  +.++.|++|+
T Consensus        30 ~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~   74 (169)
T 2v1m_A           30 RGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGKGLRILAFPCNQ   74 (169)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCC
T ss_pred             CCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcCCeEEEEEECCc
Confidence            689999999999999999999999999999864  9999999863

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.03  E-value=1.5e-10  Score=98.95  Aligned_cols=56  Identities=13%  Similarity=0.187  Sum_probs=45.8

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCCC--------chhHHHHHHH-cCc
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGDE--------SEKTKELCER-EKI  193 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d~--------~~~~~~l~~~-~~V  193 (348)
                      ++++|||+||++||++|+...|.|.+++++|++  +.++.|++|+        .++.++++++ +++
T Consensus        48 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~  114 (181)
T 2p31_A           48 RGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSV  114 (181)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCC
T ss_pred             CCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcCCEEEEEEECcCCCCCCCCCHHHHHHHHHhhcCC
Confidence            689999999999999999999999999999864  8999999863        2334556665 543

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=99.01  E-value=6.6e-10  Score=82.52  Aligned_cols=78  Identities=18%  Similarity=0.227  Sum_probs=61.8

Q ss_pred             EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch-hHHHHHHhCC--CCccceEEEEeCCeEEEEEeCCChHH
Q 018973          257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND-SCMQFLRDMN--VVEVPTFLFIRDGQIRGRYVGSGKGE  333 (348)
Q Consensus       257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~-~~~~l~~~~~--V~~~PTl~~~~~G~~v~~~~G~~~~~  333 (348)
                      ++.|+++||++|+.+.+.|.+++.++++ +.+..+|+++++ ...++.++++  +.++|++  +.+|+.+.   |.  ++
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~-i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~i--~~~g~~i~---~~--~~   74 (85)
T 1ego_A            3 TVIFGRSGCPYCVRAKDLAEKLSNERDD-FQYQYVDIRAEGITKEDLQQKAGKPVETVPQI--FVDQQHIG---GY--TD   74 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHSS-CEEEEECHHHHTCCSHHHHHHTCCCSCCSCEE--EETTEEEE---SS--HH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHhcCCC-ceEEEEecccChHHHHHHHHHhCCCCceeCeE--EECCEEEE---CH--HH
Confidence            6789999999999999999999988754 899999987643 1134899999  9999998  34888754   33  67


Q ss_pred             HHHHHHHHh
Q 018973          334 LIGEILRYQ  342 (348)
Q Consensus       334 L~~~l~~~~  342 (348)
                      |.+++++.+
T Consensus        75 l~~~~~~~~   83 (85)
T 1ego_A           75 FAAWVKENL   83 (85)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            888877654

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=99.00  E-value=1.3e-09  Score=91.87  Aligned_cols=93  Identities=15%  Similarity=0.320  Sum_probs=71.3

Q ss_pred             CCcEEEEEEeCCCCh-hhhhhhhHHHHHHHHhCC---cEEEEEEECCC----chhHHHHHHhC-----------------
Q 018973          252 DQKLIVLDVGLKHCG-PCVKVYPTVIKLSRQMAG---TVVFARMNGDE----NDSCMQFLRDM-----------------  306 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~-~C~~~~p~l~~la~~~~~---~v~~~~vd~~~----~~~~~~l~~~~-----------------  306 (348)
                      .+++++|+||++||+ +|....+.|.++.+++++   ++.++.|+.+.    .+..+++++++                 
T Consensus        32 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~~~~~~~~~~~~~~~~~l~d~~~~~  111 (174)
T 1xzo_A           32 KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSE  111 (174)
T ss_dssp             TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCCCGGGEEEEBCSCHHH
T ss_pred             CCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCCcceEEEeCCCHHH
Confidence            478999999999999 999999999999988853   38999998862    12223333332                 


Q ss_pred             --------------------CCCccce-EEEEeCCeEEEEEeCC---ChHHHHHHHHHHhCC
Q 018973          307 --------------------NVVEVPT-FLFIRDGQIRGRYVGS---GKGELIGEILRYQGV  344 (348)
Q Consensus       307 --------------------~V~~~PT-l~~~~~G~~v~~~~G~---~~~~L~~~l~~~~~~  344 (348)
                                          ++..+|+ +++.++|+++.++.|.   +.++|.+.|++++..
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~ll~~  173 (174)
T 1xzo_A          112 IEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVENTPYDDIISDVKSASTL  173 (174)
T ss_dssp             HHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESSSSCCHHHHHHHHHHHTCC
T ss_pred             HHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEEEcCCCCCCHHHHHHHHHHHHhc
Confidence                                3456786 5666899999999997   378999999988753

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=98.97  E-value=1.7e-09  Score=94.05  Aligned_cols=91  Identities=14%  Similarity=0.175  Sum_probs=67.9

Q ss_pred             CCcEEEEEEeCCCChh-hhhhhhHHHHHHHHhC----CcEEEEEEECCCc-------------------------hhHHH
Q 018973          252 DQKLIVLDVGLKHCGP-CVKVYPTVIKLSRQMA----GTVVFARMNGDEN-------------------------DSCMQ  301 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~-C~~~~p~l~~la~~~~----~~v~~~~vd~~~~-------------------------~~~~~  301 (348)
                      .+++++|+||++||++ |....|.|.++.+++.    +++.++.|++|..                         +...+
T Consensus        40 ~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~~  119 (200)
T 2b7k_A           40 LGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKN  119 (200)
T ss_dssp             TTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHTTSCTTCEEEECCHHHHHH
T ss_pred             CCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCCCCCHHHHHHHHHHcCCCceEEeCCHHHHHH
Confidence            4789999999999998 9999999999777663    4688888887731                         12345


Q ss_pred             HHHhCCCC-ccc---------------e-EEEEeCCeEEEEEeCC-ChHHHHHHHHHHh
Q 018973          302 FLRDMNVV-EVP---------------T-FLFIRDGQIRGRYVGS-GKGELIGEILRYQ  342 (348)
Q Consensus       302 l~~~~~V~-~~P---------------T-l~~~~~G~~v~~~~G~-~~~~L~~~l~~~~  342 (348)
                      +++.|+|. ..|               + +++.++|+++.++.|. +.+++.+.|.+++
T Consensus       120 ~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~~~g~~~~~~~~~~i~~~l  178 (200)
T 2b7k_A          120 ACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHV  178 (200)
T ss_dssp             HHHHTTC--------------CTTTCCCEEEECTTSCEEEEECTTCCTTHHHHHHHHHH
T ss_pred             HHHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEEeCCCCCHHHHHHHHHHHH
Confidence            78888887 444               3 6777899999999887 7777777666654

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=98.95  E-value=3.3e-10  Score=97.43  Aligned_cols=42  Identities=12%  Similarity=0.079  Sum_probs=39.0

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCC
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGD  179 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d  179 (348)
                      ++++|||+||++||++|+...|.|.++.++|++  +.++.|++|
T Consensus        45 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d   88 (187)
T 3dwv_A           45 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPSN   88 (187)
T ss_dssp             TTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGGTCEEEEEEBC
T ss_pred             CCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhCCeEEEEEECc
Confidence            689999999999999999999999999999864  899999876

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=98.95  E-value=4.4e-10  Score=96.48  Aligned_cols=77  Identities=14%  Similarity=-0.030  Sum_probs=65.6

Q ss_pred             CCCEEEEEEe-CCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCch----------------------hHHHHHHHcC
Q 018973          138 KNKLVVVEFA-ASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESE----------------------KTKELCEREK  192 (348)
Q Consensus       138 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~----------------------~~~~l~~~~~  192 (348)
                      +++++||+|| ++||++|+...|.|.+++++++  ++.++.|+.|..+                      ...++++.|+
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  109 (187)
T 1we0_A           30 KGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFD  109 (187)
T ss_dssp             SSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTT
T ss_pred             CCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHHhccccCCCceEEECCchHHHHHhC
Confidence            5799999999 9999999999999999999886  6999999988521                      1246888999


Q ss_pred             cC------CCCeEEEe-eccccccccccC
Q 018973          193 IK------KVPHFSFY-KSMEKIHEEEGI  214 (348)
Q Consensus       193 V~------~~Pt~~~~-~~g~~v~~~~G~  214 (348)
                      |.      .+|+++++ ++|+.+..+.|.
T Consensus       110 v~~~~~g~~~P~~~lid~~G~i~~~~~g~  138 (187)
T 1we0_A          110 VLNEETGLADRGTFIIDPDGVIQAIEINA  138 (187)
T ss_dssp             CEETTTTEECEEEEEECTTSBEEEEEEEC
T ss_pred             CCcCCCCceeeEEEEECCCCeEEEEEecC
Confidence            99      99998888 689999888774

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=98.94  E-value=1.8e-09  Score=92.62  Aligned_cols=57  Identities=19%  Similarity=0.293  Sum_probs=47.3

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCCC--------chhHHHHHHHcCcC
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGDE--------SEKTKELCEREKIK  194 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d~--------~~~~~~l~~~~~V~  194 (348)
                      ++++|||+||++||++|+...|.|.++.++|++  +.++.|++|.        .++.+++++++++.
T Consensus        48 ~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~  114 (185)
T 2gs3_A           48 RGFVCIVTNVASQGGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVK  114 (185)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHTTCC
T ss_pred             CCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcCCeEEEEEECcccCCCCCCCHHHHHHHHHHcCCC
Confidence            689999999999999999999999999999864  8999998763        23346677777664

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=98.92  E-value=6.1e-09  Score=87.38  Aligned_cols=90  Identities=14%  Similarity=0.085  Sum_probs=71.8

Q ss_pred             CCcEEEEEEeCCC-ChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch--------------------hHHHHHHhCCCCc
Q 018973          252 DQKLIVLDVGLKH-CGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND--------------------SCMQFLRDMNVVE  310 (348)
Q Consensus       252 ~~k~vvV~F~a~w-C~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~--------------------~~~~l~~~~~V~~  310 (348)
                      .+++++|+||++| |++|+...|.+.++.+++ +++.++.|+.|..+                    ...++++.|++..
T Consensus        43 ~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~-~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~v~~  121 (167)
T 2jsy_A           43 KGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL-GDVNVYTISADLPFAQARWCGANGIDKVETLSDHRDMSFGEAFGVYI  121 (167)
T ss_dssp             TTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH-SSCEEEEEECSSGGGTSCCGGGSSCTTEEEEEGGGTCHHHHHTTCBB
T ss_pred             CCCeEEEEEecCCCCCchHHHHHHHHHHHHHc-CCCEEEEEECCCHHHHHHHHHhcCCCCceEeeCCchhHHHHHhCCcc
Confidence            3689999999999 999999999999999999 67999999887411                    1235888899987


Q ss_pred             ------cceE-EEEeCCeEEEEEeCC------ChHHHHHHHHHHh
Q 018973          311 ------VPTF-LFIRDGQIRGRYVGS------GKGELIGEILRYQ  342 (348)
Q Consensus       311 ------~PTl-~~~~~G~~v~~~~G~------~~~~L~~~l~~~~  342 (348)
                            .|+. ++.++|+++.++.|.      +.+++.+.|++++
T Consensus       122 ~~~g~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~~l~~~l~~ll  166 (167)
T 2jsy_A          122 KELRLLARSVFVLDENGKVVYAEYVSEATNHPNYEKPIEAAKALV  166 (167)
T ss_dssp             TTTCSBCCEEEEECTTSCEEEEEECSBTTSCCCSHHHHHHHHHHH
T ss_pred             ccCCceeeEEEEEcCCCcEEEEEecCCcCCCCCHHHHHHHHHHhh
Confidence                  4964 555899999998764      3478888888764

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=98.92  E-value=3.2e-09  Score=92.36  Aligned_cols=91  Identities=13%  Similarity=0.117  Sum_probs=73.1

Q ss_pred             CCcEEEEEEe-CCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchh-------------------------HHHHHH
Q 018973          252 DQKLIVLDVG-LKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDS-------------------------CMQFLR  304 (348)
Q Consensus       252 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~-------------------------~~~l~~  304 (348)
                      .+++++|+|| ++||++|....+.|.++.+++++ ++.++.|+.|....                         ..++++
T Consensus        35 ~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~v~vi~Is~D~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  114 (202)
T 1uul_A           35 KGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMK  114 (202)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHH
T ss_pred             CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCCceeEEECCchHHHH
Confidence            3689999999 99999999999999999999854 49999999875221                         124778


Q ss_pred             hCCCC------ccceEEEE-eCCeEEEEEeCC-----ChHHHHHHHHHHh
Q 018973          305 DMNVV------EVPTFLFI-RDGQIRGRYVGS-----GKGELIGEILRYQ  342 (348)
Q Consensus       305 ~~~V~------~~PTl~~~-~~G~~v~~~~G~-----~~~~L~~~l~~~~  342 (348)
                      .|++.      .+|+++++ ++|+++.++.|.     +.+++.+.|+++.
T Consensus       115 ~ygv~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~ell~~l~~l~  164 (202)
T 1uul_A          115 SYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAFQ  164 (202)
T ss_dssp             HHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HcCCccCCCCceeeEEEEECCCCEEEEEEeCCCCCCCCHHHHHHHHHHhh
Confidence            88998      99975555 899999998774     3588888887764

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=98.92  E-value=6.4e-10  Score=96.23  Aligned_cols=77  Identities=14%  Similarity=0.025  Sum_probs=64.6

Q ss_pred             CCCEEEEEEe-CCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchh----------------------HHHHHHHcC
Q 018973          138 KNKLVVVEFA-ASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEK----------------------TKELCEREK  192 (348)
Q Consensus       138 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~----------------------~~~l~~~~~  192 (348)
                      +++++||+|| ++||++|+...|.|.+++++|+  ++.|+.|+.|..+.                      ..++++.|+
T Consensus        44 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  123 (195)
T 2bmx_A           44 PGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAG  123 (195)
T ss_dssp             TTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHT
T ss_pred             CCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhccccCCceeEEeCCchHHHHHhC
Confidence            5799999999 9999999999999999999886  59999999885211                      246788899


Q ss_pred             cC-----CCCeEEEe-eccccccccccC
Q 018973          193 IK-----KVPHFSFY-KSMEKIHEEEGI  214 (348)
Q Consensus       193 V~-----~~Pt~~~~-~~g~~v~~~~G~  214 (348)
                      |.     .+|+++++ ++|+.+..+.|.
T Consensus       124 v~~~~g~~~P~~~lid~~G~i~~~~~g~  151 (195)
T 2bmx_A          124 VLNADGVADRVTFIVDPNNEIQFVSATA  151 (195)
T ss_dssp             CBCTTSSBCEEEEEECTTSBEEEEEEEC
T ss_pred             CcccCCCccceEEEEcCCCeEEEEEecC
Confidence            99     99997777 589888877764

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=98.90  E-value=1.6e-08  Score=89.09  Aligned_cols=91  Identities=20%  Similarity=0.221  Sum_probs=72.7

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCc-EEEEEEECCC--------chhHHHHHH------hCCCC-------
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGT-VVFARMNGDE--------NDSCMQFLR------DMNVV-------  309 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~~~--------~~~~~~l~~------~~~V~-------  309 (348)
                      .++++||+||++||++|+ ..|.|.++.++|+++ +.++.|+++.        .++++++++      ++++.       
T Consensus        55 ~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~g~~Vlgvs~d~f~~~e~~~~~~i~~f~~~~~~~~~~~~~fpll~d~  133 (215)
T 2i3y_A           55 VGKHILFVNVATYCGLTA-QYPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLKYVRPGGGFVPSFQLFEKG  133 (215)
T ss_dssp             TTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHTSSCTTCCCSSEEBCCC
T ss_pred             CCCEEEEEEeCCCCCChH-hHHHHHHHHHHhccCCeEEEEEEccccCcCCCCCHHHHHHHHHhccchhccCccceeEeee
Confidence            579999999999999999 889999999999643 8999998753        234566777      65431       


Q ss_pred             -------------------------c--------------c---c-eEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973          310 -------------------------E--------------V---P-TFLFIRDGQIRGRYVGS-GKGELIGEILRYQG  343 (348)
Q Consensus       310 -------------------------~--------------~---P-Tl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~  343 (348)
                                               +              +   | ||++.++|+++.++.|. +.++|.+.|++++.
T Consensus       134 d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~npttfLID~~G~vv~~~~g~~~~~~l~~~I~~ll~  211 (215)
T 2i3y_A          134 DVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWSHRATVSSVKTDILAYLK  211 (215)
T ss_dssp             CSSSTTCCHHHHHHHHHSCCSCSCCCCTTTCCSSSCCTTCCCSTTCEEEECTTSCEEEEECTTSCHHHHHHHHHHHGG
T ss_pred             ccCCcccchHHHHHHhhCcccccccccccccccccccccccccCceEEEECCCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence                                     0              1   5 57777999999999988 88999999998764

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=98.90  E-value=5.3e-09  Score=92.00  Aligned_cols=91  Identities=19%  Similarity=0.182  Sum_probs=72.8

Q ss_pred             CCcEEEEEEe-CCCChhhhhhhhHHHHHHHHhC-CcEEEEEEECCCchh-------------------------HHHHHH
Q 018973          252 DQKLIVLDVG-LKHCGPCVKVYPTVIKLSRQMA-GTVVFARMNGDENDS-------------------------CMQFLR  304 (348)
Q Consensus       252 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~~~~-------------------------~~~l~~  304 (348)
                      .+++++|+|| ++||++|..+.|.|.++.++++ .++.++.|+.|....                         ..++++
T Consensus        51 ~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~  130 (213)
T 2i81_A           51 GKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERNVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSISK  130 (213)
T ss_dssp             TTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHSSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCccCCCceEEECCchHHHH
Confidence            3689999999 9999999999999999999985 359999998874211                         234788


Q ss_pred             hCCCC-----ccceE-EEEeCCeEEEEEeCC-----ChHHHHHHHHHHh
Q 018973          305 DMNVV-----EVPTF-LFIRDGQIRGRYVGS-----GKGELIGEILRYQ  342 (348)
Q Consensus       305 ~~~V~-----~~PTl-~~~~~G~~v~~~~G~-----~~~~L~~~l~~~~  342 (348)
                      .|++.     .+|++ ++.++|+++.++.|.     +.+++.+.|+++.
T Consensus       131 ~ygv~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~ell~~l~~l~  179 (213)
T 2i81_A          131 DYNVLFDDSVSLRAFVLIDMNGIVQHLLVNNLAIGRSVDEILRIIDAIQ  179 (213)
T ss_dssp             HTTCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             HhCCccccCCcccEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            89998     89964 555899999988764     4788888887764

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=98.89  E-value=3.2e-09  Score=89.11  Aligned_cols=77  Identities=10%  Similarity=-0.004  Sum_probs=60.9

Q ss_pred             CCCEEEEEEeCCC-CHHHHhhhhHHHHHHHHcCCcEEEEEeCCCch--------------------hHHHHHHHcCcCC-
Q 018973          138 KNKLVVVEFAASR-SLDSSKIYPFMVDLSRQCNDVEFILVMGDESE--------------------KTKELCEREKIKK-  195 (348)
Q Consensus       138 ~~k~vvV~F~a~w-C~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~--------------------~~~~l~~~~~V~~-  195 (348)
                      +++++||+||++| |++|+...|.|.+++++|.++.++.|+.|..+                    ...++++.|+|.. 
T Consensus        43 ~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~v~~~  122 (167)
T 2jsy_A           43 KGKVTIISVIPSIDTGVCDAQTRRFNEEAAKLGDVNVYTISADLPFAQARWCGANGIDKVETLSDHRDMSFGEAFGVYIK  122 (167)
T ss_dssp             TTSCEEEEECSCSTTSHHHHTHHHHHHHHHHHSSCEEEEEECSSGGGTSCCGGGSSCTTEEEEEGGGTCHHHHHTTCBBT
T ss_pred             CCCeEEEEEecCCCCCchHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeeCCchhHHHHHhCCccc
Confidence            5789999999999 99999999999999999977999999988521                    2346777888876 


Q ss_pred             -----CCeEEEe-eccccccccccC
Q 018973          196 -----VPHFSFY-KSMEKIHEEEGI  214 (348)
Q Consensus       196 -----~Pt~~~~-~~g~~v~~~~G~  214 (348)
                           .|+.+++ ++|+.+..+.|.
T Consensus       123 ~~g~~~p~~~lid~~G~i~~~~~g~  147 (167)
T 2jsy_A          123 ELRLLARSVFVLDENGKVVYAEYVS  147 (167)
T ss_dssp             TTCSBCCEEEEECTTSCEEEEEECS
T ss_pred             cCCceeeEEEEEcCCCcEEEEEecC
Confidence                 3764444 578777777653

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=98.89  E-value=5.7e-09  Score=89.90  Aligned_cols=91  Identities=18%  Similarity=0.208  Sum_probs=73.1

Q ss_pred             CCcEEEEEEe-CCCChhhhhhhhHHHHHHHHhC-CcEEEEEEECCCchh-------------------------HHHHHH
Q 018973          252 DQKLIVLDVG-LKHCGPCVKVYPTVIKLSRQMA-GTVVFARMNGDENDS-------------------------CMQFLR  304 (348)
Q Consensus       252 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~~~~-------------------------~~~l~~  304 (348)
                      .+++++|+|| ++||++|..+.|.|.++.++++ .++.++.|+.+..+.                         ..++++
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~  109 (192)
T 2h01_A           30 GKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIAR  109 (192)
T ss_dssp             TTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhHHhhCCccCCCcCeEECCcHHHHH
Confidence            3689999999 9999999999999999999885 358999998874211                         124888


Q ss_pred             hCCCC-----ccceEEEE-eCCeEEEEEeCC-----ChHHHHHHHHHHh
Q 018973          305 DMNVV-----EVPTFLFI-RDGQIRGRYVGS-----GKGELIGEILRYQ  342 (348)
Q Consensus       305 ~~~V~-----~~PTl~~~-~~G~~v~~~~G~-----~~~~L~~~l~~~~  342 (348)
                      .|++.     .+|+++++ ++|+++.++.|.     +.+++.+.|+++.
T Consensus       110 ~~gv~~~~g~~~P~~~liD~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  158 (192)
T 2h01_A          110 SYDVLFNESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDALQ  158 (192)
T ss_dssp             HTTCEETTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHHHH
T ss_pred             HhCCcCcCCceeeEEEEEcCCCEEEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence            89999     89976666 799999998874     3677888777654

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=98.88  E-value=7.4e-10  Score=95.98  Aligned_cols=77  Identities=13%  Similarity=0.016  Sum_probs=64.4

Q ss_pred             CCCEEEEEEe-CCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCch-------------------------hHHHHHH
Q 018973          138 KNKLVVVEFA-ASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESE-------------------------KTKELCE  189 (348)
Q Consensus       138 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~-------------------------~~~~l~~  189 (348)
                      ++++|||+|| ++||++|+...|.|.++++++.  ++.++.|+.|..+                         ...++++
T Consensus        32 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  111 (198)
T 1zof_A           32 GKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISR  111 (198)
T ss_dssp             CSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHH
T ss_pred             CCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhhhhcccccCceeEEEECCchHHHH
Confidence            6899999999 9999999999999999999875  5999999988521                         1246888


Q ss_pred             HcCcC-----CCCeEEEe-eccccccccccC
Q 018973          190 REKIK-----KVPHFSFY-KSMEKIHEEEGI  214 (348)
Q Consensus       190 ~~~V~-----~~Pt~~~~-~~g~~v~~~~G~  214 (348)
                      .|+|.     .+|+++++ ++|+.+..+.|.
T Consensus       112 ~~~v~~~~g~~~P~~~lid~~G~i~~~~~g~  142 (198)
T 1zof_A          112 DYDVLFEEAIALRGAFLIDKNMKVRHAVIND  142 (198)
T ss_dssp             HTTCEETTTEECEEEEEEETTTEEEEEEEES
T ss_pred             HhCCcccCCcccceEEEECCCCEEEEEEecC
Confidence            99999     99987766 689988887773

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=98.87  E-value=2.9e-09  Score=78.39  Aligned_cols=58  Identities=9%  Similarity=0.140  Sum_probs=46.6

Q ss_pred             EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeecccc
Q 018973          143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEK  207 (348)
Q Consensus       143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~~  207 (348)
                      ++.|+++||++|+.+.+.|+++     ++.|..+|+++.++..+..+++|+..+|+++  .+|+.
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~~-----~i~~~~vdi~~~~~~~~~~~~~g~~~vP~~~--~~g~~   60 (81)
T 1h75_A            3 ITIYTRNDCVQCHATKRAMENR-----GFDFEMINVDRVPEAAEALRAQGFRQLPVVI--AGDLS   60 (81)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-----TCCCEEEETTTCHHHHHHHHHTTCCSSCEEE--ETTEE
T ss_pred             EEEEcCCCChhHHHHHHHHHHC-----CCCeEEEECCCCHHHHHHHHHhCCCccCEEE--ECCEE
Confidence            6789999999999999999873     5788899999866545555579999999983  46654

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=98.87  E-value=6.2e-09  Score=91.99  Aligned_cols=91  Identities=19%  Similarity=0.187  Sum_probs=73.9

Q ss_pred             CCcEEEEEEe-CCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchh-------------------------HHHHHH
Q 018973          252 DQKLIVLDVG-LKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDS-------------------------CMQFLR  304 (348)
Q Consensus       252 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~-------------------------~~~l~~  304 (348)
                      .+++++|+|| ++||++|..+.+.|.++.+++.+ ++.++.|+.+....                         ..++++
T Consensus        55 ~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~i~~  134 (220)
T 1zye_A           55 KGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISR  134 (220)
T ss_dssp             TTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHhCCCcCCceEEEECCcHHHHH
Confidence            4689999999 99999999999999999999853 59999998874211                         135888


Q ss_pred             hCCCC------ccceEEEE-eCCeEEEEEeCC-----ChHHHHHHHHHHh
Q 018973          305 DMNVV------EVPTFLFI-RDGQIRGRYVGS-----GKGELIGEILRYQ  342 (348)
Q Consensus       305 ~~~V~------~~PTl~~~-~~G~~v~~~~G~-----~~~~L~~~l~~~~  342 (348)
                      .|++.      .+|+++++ ++|+++.++.|.     +.+++.+.|+++.
T Consensus       135 ~ygv~~~~~g~~~P~~~liD~~G~I~~~~~g~~~~~~~~~ell~~l~~l~  184 (220)
T 1zye_A          135 DYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQ  184 (220)
T ss_dssp             HTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             HhCCeecCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence            89998      99987666 799999988764     4578888888765

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=98.87  E-value=5.2e-09  Score=88.88  Aligned_cols=88  Identities=11%  Similarity=0.027  Sum_probs=66.2

Q ss_pred             CCcEEEEEEeCCC-ChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchh-------------------HHHHHHhCCCCcc
Q 018973          252 DQKLIVLDVGLKH-CGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDS-------------------CMQFLRDMNVVEV  311 (348)
Q Consensus       252 ~~k~vvV~F~a~w-C~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~-------------------~~~l~~~~~V~~~  311 (348)
                      .+++++|+||++| |++|+...|.|.++.++  .++.++.|+.|..+.                   ..++++.|++...
T Consensus        43 ~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~--~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~  120 (175)
T 1xvq_A           43 RGKSVLLNIFPSVDTPVCATSVRTFDERAAA--SGATVLCVSKDLPFAQKRFCGAEGTENVMPASAFRDSFGEDYGVTIA  120 (175)
T ss_dssp             TTSCEEEEECSCCCSSCCCHHHHHHHHHHHH--TTCEEEEEESSCHHHHTTCC------CEEEEECTTSSHHHHTTCBBC
T ss_pred             CCCEEEEEEEeCCCCchHHHHHHHHHHHHhh--cCCEEEEEECCCHHHHHHHHHHcCCCCceEeeCCHHHHHHHhCCccc
Confidence            4789999999999 99999999999999988  568999998873211                   1237888999877


Q ss_pred             ---------ce-EEEEeCCeEEEEEeC--C-ChHHHHHHHHHH
Q 018973          312 ---------PT-FLFIRDGQIRGRYVG--S-GKGELIGEILRY  341 (348)
Q Consensus       312 ---------PT-l~~~~~G~~v~~~~G--~-~~~~L~~~l~~~  341 (348)
                               |+ +++.++|+++.++.|  . +.+++.+.|+.+
T Consensus       121 ~~~~~g~~~p~~~lid~~G~I~~~~~g~~~~~~~~~~~~l~~l  163 (175)
T 1xvq_A          121 DGPMAGLLARAIVVIGADGNVAYTELVPEIAQEPNYEAALAAL  163 (175)
T ss_dssp             SSTTTTSBCSEEEEECTTSBEEEEEECSBTTCCCCHHHHHHHH
T ss_pred             ccccCCcccceEEEECCCCeEEEEEECCCcCCCCCHHHHHHHH
Confidence                     75 566689999999874  2 344455555443

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=98.87  E-value=2.4e-09  Score=78.84  Aligned_cols=75  Identities=12%  Similarity=0.099  Sum_probs=57.5

Q ss_pred             EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCCChHHHHH
Q 018973          257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIG  336 (348)
Q Consensus       257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~~~~~L~~  336 (348)
                      ++.|+++||++|+++.+.|.+.      .+.|..+|++++++..+..+++++.++|+++  .+|+.   +.|.+.++|.+
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~~~~~~~~~g~~~vP~~~--~~g~~---~~g~~~~~l~~   71 (81)
T 1h75_A            3 ITIYTRNDCVQCHATKRAMENR------GFDFEMINVDRVPEAAEALRAQGFRQLPVVI--AGDLS---WSGFRPDMINR   71 (81)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT------TCCCEEEETTTCHHHHHHHHHTTCCSSCEEE--ETTEE---EESCCHHHHGG
T ss_pred             EEEEcCCCChhHHHHHHHHHHC------CCCeEEEECCCCHHHHHHHHHhCCCccCEEE--ECCEE---EecCCHHHHHH
Confidence            6789999999999998888763      3678899999887655555679999999983  47864   35678888877


Q ss_pred             HHHHHh
Q 018973          337 EILRYQ  342 (348)
Q Consensus       337 ~l~~~~  342 (348)
                      +|+++.
T Consensus        72 ~l~~~~   77 (81)
T 1h75_A           72 LHPAPH   77 (81)
T ss_dssp             GSCCC-
T ss_pred             HHhccc
Confidence            776543

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=98.86  E-value=2.2e-09  Score=92.46  Aligned_cols=76  Identities=13%  Similarity=0.051  Sum_probs=63.5

Q ss_pred             CCCEEEEEEe-CCCCHHHHhhhhHHHHHHHHc--CCcEEEEEeCCCchh-------------------------HHHHHH
Q 018973          138 KNKLVVVEFA-ASRSLDSSKIYPFMVDLSRQC--NDVEFILVMGDESEK-------------------------TKELCE  189 (348)
Q Consensus       138 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~--~~v~f~~vd~d~~~~-------------------------~~~l~~  189 (348)
                      +++++||+|| ++||++|+...|.|.+++++|  .++.++.|+.|..+.                         ..++++
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~  109 (192)
T 2h01_A           30 GKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIAR  109 (192)
T ss_dssp             TTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhHHhhCCccCCCcCeEECCcHHHHH
Confidence            5789999999 999999999999999999998  569999999875221                         236888


Q ss_pred             HcCcC-----CCCeEEEe-ecccccccccc
Q 018973          190 REKIK-----KVPHFSFY-KSMEKIHEEEG  213 (348)
Q Consensus       190 ~~~V~-----~~Pt~~~~-~~g~~v~~~~G  213 (348)
                      .|||.     .+|+++++ ++|+.+....|
T Consensus       110 ~~gv~~~~g~~~P~~~liD~~G~i~~~~~g  139 (192)
T 2h01_A          110 SYDVLFNESVALRAFVLIDKQGVVQHLLVN  139 (192)
T ss_dssp             HTTCEETTTEECCEEEEECTTSBEEEEEEG
T ss_pred             HhCCcCcCCceeeEEEEEcCCCEEEEEEeC
Confidence            99999     89997777 68888877666

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=98.85  E-value=2.6e-09  Score=92.85  Aligned_cols=76  Identities=12%  Similarity=0.179  Sum_probs=57.4

Q ss_pred             CCCEEEEEEeCCCCHH-HHhhhhHHHHHHHHcC-----CcEEEEEeCCC---c----------------------hhHHH
Q 018973          138 KNKLVVVEFAASRSLD-SSKIYPFMVDLSRQCN-----DVEFILVMGDE---S----------------------EKTKE  186 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~-C~~~~p~l~~la~~~~-----~v~f~~vd~d~---~----------------------~~~~~  186 (348)
                      ++++|||+||++||++ |+...|.|.++.+++.     ++.++.|++|.   .                      +...+
T Consensus        40 ~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~~  119 (200)
T 2b7k_A           40 LGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKN  119 (200)
T ss_dssp             TTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHTTSCTTCEEEECCHHHHHH
T ss_pred             CCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCCCCCHHHHHHHHHHcCCCceEEeCCHHHHHH
Confidence            6899999999999998 9999999999776552     68899998873   1                      12356


Q ss_pred             HHHHcCcC-CCC---------------e-EEEeecccccccccc
Q 018973          187 LCEREKIK-KVP---------------H-FSFYKSMEKIHEEEG  213 (348)
Q Consensus       187 l~~~~~V~-~~P---------------t-~~~~~~g~~v~~~~G  213 (348)
                      +++.|||. ..|               + +++.++|+.+..+.|
T Consensus       120 ~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~~~g  163 (200)
T 2b7k_A          120 ACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGR  163 (200)
T ss_dssp             HHHHTTC--------------CTTTCCCEEEECTTSCEEEEECT
T ss_pred             HHHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEEeCC
Confidence            88889987 444               4 666688998887776

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=98.84  E-value=3.2e-09  Score=92.39  Aligned_cols=77  Identities=12%  Similarity=-0.019  Sum_probs=63.3

Q ss_pred             CCCEEEEEEe-CCCCHHHHhhhhHHHHHHHHc--CCcEEEEEeCCCchh-------------------------HHHHHH
Q 018973          138 KNKLVVVEFA-ASRSLDSSKIYPFMVDLSRQC--NDVEFILVMGDESEK-------------------------TKELCE  189 (348)
Q Consensus       138 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~--~~v~f~~vd~d~~~~-------------------------~~~l~~  189 (348)
                      +++++||+|| ++||++|+...|.|.+++++|  .++.|+.|+.|..+.                         ..++++
T Consensus        35 ~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~v~vi~Is~D~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  114 (202)
T 1uul_A           35 KGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMK  114 (202)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHH
T ss_pred             CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCCceeEEECCchHHHH
Confidence            5789999999 999999999999999999998  459999999885211                         236788


Q ss_pred             HcCcC------CCCeEEEe-eccccccccccC
Q 018973          190 REKIK------KVPHFSFY-KSMEKIHEEEGI  214 (348)
Q Consensus       190 ~~~V~------~~Pt~~~~-~~g~~v~~~~G~  214 (348)
                      .|+|.      .+|+++++ ++|+.+..+.|.
T Consensus       115 ~ygv~~~~~g~~~P~~~lid~~G~i~~~~~g~  146 (202)
T 1uul_A          115 SYGVLKEEDGVAYRGLFIIDPKQNLRQITVND  146 (202)
T ss_dssp             HHTCEETTTTEECEEEEEECTTSBEEEEEEEC
T ss_pred             HcCCccCCCCceeeEEEEECCCCEEEEEEeCC
Confidence            89998      89986666 688888877663

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=98.84  E-value=1.4e-08  Score=89.75  Aligned_cols=90  Identities=12%  Similarity=0.108  Sum_probs=70.2

Q ss_pred             CCcEEEEEEeC-CCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchhH-------------------------HHHHH
Q 018973          252 DQKLIVLDVGL-KHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDSC-------------------------MQFLR  304 (348)
Q Consensus       252 ~~k~vvV~F~a-~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~~-------------------------~~l~~  304 (348)
                      .+++++|+||+ +||++|....|.|.++.+++++ .+.++.|+.|...+.                         .++++
T Consensus        68 ~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~  147 (222)
T 3ztl_A           68 RGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEISK  147 (222)
T ss_dssp             TTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTSCCSCSSCEEECSSSHHHH
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhhccccccceeEEeCCchHHHH
Confidence            47899999996 9999999999999999999964 499999998753221                         13677


Q ss_pred             hCCCC------ccceEEEE-eCCeEEEEEeCC-----ChHHHHHHHHHH
Q 018973          305 DMNVV------EVPTFLFI-RDGQIRGRYVGS-----GKGELIGEILRY  341 (348)
Q Consensus       305 ~~~V~------~~PTl~~~-~~G~~v~~~~G~-----~~~~L~~~l~~~  341 (348)
                      .|++.      .+|+++++ ++|+++.++.|.     ..+++.+.|++.
T Consensus       148 ~ygv~~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~~il~~l~~l  196 (222)
T 3ztl_A          148 AYGVFDEEDGNAFRGLFIIDPNGILRQITINDKPVGRSVDETLRLLDAF  196 (222)
T ss_dssp             HTTCBCTTTSSBCEEEEEECTTSEEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HcCCeecCCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            78998      89965555 799999998775     245666666654

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=98.83  E-value=3.3e-08  Score=86.56  Aligned_cols=90  Identities=18%  Similarity=0.160  Sum_probs=70.7

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCc-EEEEEEECCC--------chhHHHHHH------hCCCC-------
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGT-VVFARMNGDE--------NDSCMQFLR------DMNVV-------  309 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~~~--------~~~~~~l~~------~~~V~-------  309 (348)
                      .++++||+||++||++| ...|.|.++.++|+++ +.++.|+++.        .+.++++++      ++++.       
T Consensus        37 kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~g~~vlgvs~d~f~~~e~~~~~~i~~f~~~~~~~~~~~~~fp~l~d~  115 (207)
T 2r37_A           37 AGKYVLFVNVASYGGLT-GQYIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKG  115 (207)
T ss_dssp             TTSEEEEEEECSSSTTT-THHHHHHHHHHHHGGGTEEEEEEECCCBTTCCCSCHHHHHHHHHHTSSCTTCCCSSEEBCCC
T ss_pred             CCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccCCEEEEEEECcccCcCCCCCHHHHHHHHHhcchhhccCccceeeeEe
Confidence            47899999999999999 6789999999999644 8999998652        134566777      65431       


Q ss_pred             -------------------------c--------------c---c-eEEEEeCCeEEEEEeCC-ChHHHHHHHHHHh
Q 018973          310 -------------------------E--------------V---P-TFLFIRDGQIRGRYVGS-GKGELIGEILRYQ  342 (348)
Q Consensus       310 -------------------------~--------------~---P-Tl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~  342 (348)
                                               +              +   | |+++.++|+++.++.|. +.++|.+.|++++
T Consensus       116 d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~~~ttflID~~G~i~~~~~g~~~~~~l~~~I~~ll  192 (207)
T 2r37_A          116 DVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILSYM  192 (207)
T ss_dssp             CSSSTTCCHHHHHHHHHSCCSCSCCCCGGGBCCSSCCTTCCCSTTCEEEECTTSCEEEEECTTSCHHHHHHHHHHHH
T ss_pred             ccCCcccchHHHHHHhhCccccccccccccccccccccCcccccceEEEECCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence                                     0              1   5 57777999999999988 8888888888764

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=98.83  E-value=2.6e-09  Score=94.43  Aligned_cols=77  Identities=14%  Similarity=0.041  Sum_probs=64.0

Q ss_pred             CCCEEEEEEe-CCCCHHHHhhhhHHHHHHHHc--CCcEEEEEeCCCchh-------------------------HHHHHH
Q 018973          138 KNKLVVVEFA-ASRSLDSSKIYPFMVDLSRQC--NDVEFILVMGDESEK-------------------------TKELCE  189 (348)
Q Consensus       138 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~--~~v~f~~vd~d~~~~-------------------------~~~l~~  189 (348)
                      +++++||+|| ++||++|+...|.|.+++++|  .++.++.|++|..+.                         ..++++
T Consensus        55 ~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~i~~  134 (220)
T 1zye_A           55 KGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISR  134 (220)
T ss_dssp             TTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHhCCCcCCceEEEECCcHHHHH
Confidence            5799999999 999999999999999999998  569999999875211                         246888


Q ss_pred             HcCcC------CCCeEEEe-eccccccccccC
Q 018973          190 REKIK------KVPHFSFY-KSMEKIHEEEGI  214 (348)
Q Consensus       190 ~~~V~------~~Pt~~~~-~~g~~v~~~~G~  214 (348)
                      .|+|.      .+|+++++ ++|+.+....|.
T Consensus       135 ~ygv~~~~~g~~~P~~~liD~~G~I~~~~~g~  166 (220)
T 1zye_A          135 DYGVLLEGPGLALRGLFIIDPNGVIKHLSVND  166 (220)
T ss_dssp             HTTCEETTTTEECEEEEEECTTSBEEEEEEEC
T ss_pred             HhCCeecCCCcccceEEEECCCCEEEEEEecC
Confidence            89998      89998777 678888776653

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=98.83  E-value=1.5e-08  Score=89.25  Aligned_cols=84  Identities=13%  Similarity=0.139  Sum_probs=64.0

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCC------------------------------------
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDE------------------------------------  295 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~------------------------------------  295 (348)
                      +++++++.||++||++|+++.|.+.++.+.   ++.+..+...-                                    
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~l~~~---~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~~  161 (216)
T 1eej_A           85 QEKHVITVFTDITCGYCHKLHEQMADYNAL---GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPA  161 (216)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHTTHHHHHHT---TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHhC---CcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCCCCChh
Confidence            478999999999999999999999998763   36665544310                                    


Q ss_pred             -----chhHHHHHHhCCCCccceEEEEeCCeEEEEEeCC-ChHHHHHHHHHHh
Q 018973          296 -----NDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS-GKGELIGEILRYQ  342 (348)
Q Consensus       296 -----~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~  342 (348)
                           -+...++++++||.++||+ ++.+|+   ++.|. +.++|.++|.+..
T Consensus       162 ~~~~~v~~~~~l~~~~gV~gtPt~-v~~dG~---~~~G~~~~~~l~~~l~~~~  210 (216)
T 1eej_A          162 SCDVDIADHYALGVQLGVSGTPAV-VLSNGT---LVPGYQPPKEMKEFLDEHQ  210 (216)
T ss_dssp             CCSCCHHHHHHHHHHHTCCSSSEE-ECTTSC---EEESCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCccCEE-EEcCCe---EecCCCCHHHHHHHHHHhh
Confidence                 0123458889999999999 556785   45788 8899999888753

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=98.83  E-value=1.3e-08  Score=86.07  Aligned_cols=85  Identities=14%  Similarity=0.183  Sum_probs=67.2

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCC------------------------------------
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDE------------------------------------  295 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~------------------------------------  295 (348)
                      +.+++|+.||..||++|+.+.|.+.++.+++++ +.+...+..-                                    
T Consensus        21 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~-v~~~~~~~p~~~~~s~~aa~~~~~a~~~~~~~~~~~~lf~~~~~~~   99 (175)
T 3gyk_A           21 EGDVTVVEFFDYNCPYCRRAMAEVQGLVDADPN-VRLVYREWPILGEGSDFAARAALAARQQGKYEAFHWALMGMSGKAN   99 (175)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-EEEEEEECCCSCHHHHHHHHHHHHGGGGTCHHHHHHHHHTCSSCCS
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHhCCC-EEEEEEeCCCCCCChHHHHHHHHHHHHHhHHHHHHHHHHhcCCCCC
Confidence            478899999999999999999999999998865 6666665321                                    


Q ss_pred             ------------------------------chhHHHHHHhCCCCccceEEEEeCCeEEEEEeCC-ChHHHHHHHHHHh
Q 018973          296 ------------------------------NDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS-GKGELIGEILRYQ  342 (348)
Q Consensus       296 ------------------------------~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~  342 (348)
                                                    -....++++++||.++||+++  +|+   .+.|. +.+.|.+.|++.+
T Consensus       100 ~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~i--~g~---~~~G~~~~~~l~~~i~~~l  172 (175)
T 3gyk_A          100 ETGVLRIAREVGLDTEQLQRDMEAPEVTAHIAQSMALAQKLGFNGTPSFVV--EDA---LVPGFVEQSQLQDAVDRAR  172 (175)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHTTCHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTE---EECSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCccCCEEEE--CCE---EeeCCCCHHHHHHHHHHHH
Confidence                                          011234677899999999987  775   55788 8999999998765

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=98.82  E-value=2.9e-08  Score=82.62  Aligned_cols=75  Identities=15%  Similarity=0.198  Sum_probs=59.4

Q ss_pred             cEEEEEEe-CCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHH------------------HHHHhCCCCccc--
Q 018973          254 KLIVLDVG-LKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCM------------------QFLRDMNVVEVP--  312 (348)
Q Consensus       254 k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~------------------~l~~~~~V~~~P--  312 (348)
                      ++++|+|| ++||++|....|.|.++.++++++-.++.|+.|..+..+                  ++++.|++...|  
T Consensus        36 ~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~p~~  115 (159)
T 2a4v_A           36 RVVVFFVYPRASTPGSTRQASGFRDNYQELKEYAAVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAKKTPLS  115 (159)
T ss_dssp             SEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTCEEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHHHHHHTCBSSSSS
T ss_pred             CeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcccccC
Confidence            47899987 999999999999999999998642277777776433222                  366678888888  


Q ss_pred             -----eEEEEeCCeEEEEEeCC
Q 018973          313 -----TFLFIRDGQIRGRYVGS  329 (348)
Q Consensus       313 -----Tl~~~~~G~~v~~~~G~  329 (348)
                           ++++ ++|+++.++.|.
T Consensus       116 g~~~~~~li-~~G~i~~~~~g~  136 (159)
T 2a4v_A          116 GSIRSHFIF-VDGKLKFKRVKI  136 (159)
T ss_dssp             CBCCEEEEE-ETTEEEEEEESC
T ss_pred             CccceEEEE-cCCEEEEEEccC
Confidence                 6788 999999999987

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=98.81  E-value=2.1e-08  Score=72.25  Aligned_cols=72  Identities=11%  Similarity=0.208  Sum_probs=56.5

Q ss_pred             EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCCChHHHHH
Q 018973          257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIG  336 (348)
Q Consensus       257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~~~~~L~~  336 (348)
                      ++.|+++||++|+++.+.|+++      .+.|..+|++++++..+..+++++.++|++++  +|+.   +.|.+.++|.+
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~------~i~~~~~di~~~~~~~~~~~~~~~~~vP~l~~--~g~~---~~g~~~~~l~~   71 (75)
T 1r7h_A            3 ITLYTKPACVQCTATKKALDRA------GLAYNTVDISLDDEARDYVMALGYVQAPVVEV--DGEH---WSGFRPERIKQ   71 (75)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT------TCCCEEEETTTCHHHHHHHHHTTCBCCCEEEE--TTEE---EESCCHHHHHH
T ss_pred             EEEEeCCCChHHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHcCCCccCEEEE--CCeE---EcCCCHHHHHH
Confidence            5779999999999998888764      36788899998776444446899999999874  7864   45778888887


Q ss_pred             HHH
Q 018973          337 EIL  339 (348)
Q Consensus       337 ~l~  339 (348)
                      +|+
T Consensus        72 ~l~   74 (75)
T 1r7h_A           72 LQA   74 (75)
T ss_dssp             HHC
T ss_pred             HHh
Confidence            763

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=98.79  E-value=7.2e-09  Score=88.00  Aligned_cols=75  Identities=9%  Similarity=-0.044  Sum_probs=60.5

Q ss_pred             CCCEEEEEEeCCC-CHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchh-------------------HHHHHHHcCcCCC-
Q 018973          138 KNKLVVVEFAASR-SLDSSKIYPFMVDLSRQCNDVEFILVMGDESEK-------------------TKELCEREKIKKV-  196 (348)
Q Consensus       138 ~~k~vvV~F~a~w-C~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~-------------------~~~l~~~~~V~~~-  196 (348)
                      +++++||+||++| |++|+...|.|.+++++ .++.|+.|+.|..+.                   ..++++.|+|... 
T Consensus        43 ~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~-~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~  121 (175)
T 1xvq_A           43 RGKSVLLNIFPSVDTPVCATSVRTFDERAAA-SGATVLCVSKDLPFAQKRFCGAEGTENVMPASAFRDSFGEDYGVTIAD  121 (175)
T ss_dssp             TTSCEEEEECSCCCSSCCCHHHHHHHHHHHH-TTCEEEEEESSCHHHHTTCC------CEEEEECTTSSHHHHTTCBBCS
T ss_pred             CCCEEEEEEEeCCCCchHHHHHHHHHHHHhh-cCCEEEEEECCCHHHHHHHHHHcCCCCceEeeCCHHHHHHHhCCcccc
Confidence            5789999999999 99999999999999998 889999999884211                   1357888888877 


Q ss_pred             --------Ce-EEEeecccccccccc
Q 018973          197 --------PH-FSFYKSMEKIHEEEG  213 (348)
Q Consensus       197 --------Pt-~~~~~~g~~v~~~~G  213 (348)
                              |+ +++.++|+.+..+.|
T Consensus       122 ~~~~g~~~p~~~lid~~G~I~~~~~g  147 (175)
T 1xvq_A          122 GPMAGLLARAIVVIGADGNVAYTELV  147 (175)
T ss_dssp             STTTTSBCSEEEEECTTSBEEEEEEC
T ss_pred             cccCCcccceEEEECCCCeEEEEEEC
Confidence                    66 445568888887764

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=98.79  E-value=4.8e-09  Score=92.84  Aligned_cols=77  Identities=12%  Similarity=0.021  Sum_probs=62.7

Q ss_pred             CCCEEEEEEeC-CCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchh-------------------------HHHHHH
Q 018973          138 KNKLVVVEFAA-SRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEK-------------------------TKELCE  189 (348)
Q Consensus       138 ~~k~vvV~F~a-~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~-------------------------~~~l~~  189 (348)
                      ++++|||+||+ +||++|+...|.|.+++++|.  ++.|+.|++|..+.                         ..++++
T Consensus        68 ~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~  147 (222)
T 3ztl_A           68 RGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEISK  147 (222)
T ss_dssp             TTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTSCCSCSSCEEECSSSHHHH
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhhccccccceeEEeCCchHHHH
Confidence            68999999997 999999999999999999984  49999999885321                         135778


Q ss_pred             HcCcC------CCCeEEEe-eccccccccccC
Q 018973          190 REKIK------KVPHFSFY-KSMEKIHEEEGI  214 (348)
Q Consensus       190 ~~~V~------~~Pt~~~~-~~g~~v~~~~G~  214 (348)
                      .|+|.      .+|+.+++ ++|+.+..+.|.
T Consensus       148 ~ygv~~~~~g~~~P~~~lID~~G~I~~~~~g~  179 (222)
T 3ztl_A          148 AYGVFDEEDGNAFRGLFIIDPNGILRQITIND  179 (222)
T ss_dssp             HTTCBCTTTSSBCEEEEEECTTSEEEEEEEEC
T ss_pred             HcCCeecCCCCccceEEEECCCCeEEEEEecC
Confidence            88998      88986666 688888877664

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=98.78  E-value=2e-08  Score=83.80  Aligned_cols=90  Identities=9%  Similarity=0.063  Sum_probs=67.6

Q ss_pred             CCcEEEEEEeC-CCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchhHHH------------------HHHhCCCCc-
Q 018973          252 DQKLIVLDVGL-KHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDSCMQ------------------FLRDMNVVE-  310 (348)
Q Consensus       252 ~~k~vvV~F~a-~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~~~~------------------l~~~~~V~~-  310 (348)
                      .+++++|+||+ +||++|....|.|.++.+++++ .+.++.|+.|..+..++                  +++.|++.. 
T Consensus        34 ~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  113 (163)
T 3gkn_A           34 AGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSHDNFCAKQGFAFPLVSDGDEALCRAFDVIKE  113 (163)
T ss_dssp             TTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHCCSSCEEECTTCHHHHHTTCEEE
T ss_pred             CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHhCCccc
Confidence            46799999998 9999999999999999998853 38888888875443333                  555677766 


Q ss_pred             -----------cceEEEE-eCCeEEEEEeCC-C---hHHHHHHHHHH
Q 018973          311 -----------VPTFLFI-RDGQIRGRYVGS-G---KGELIGEILRY  341 (348)
Q Consensus       311 -----------~PTl~~~-~~G~~v~~~~G~-~---~~~L~~~l~~~  341 (348)
                                 +|+.+++ ++|+++..+.|. .   .+++.+.|+++
T Consensus       114 ~~~~~~~~~~~~p~~~lid~~G~i~~~~~~~~~~~~~~~il~~l~~l  160 (163)
T 3gkn_A          114 KNMYGKQVLGIERSTFLLSPEGQVVQAWRKVKVAGHADAVLAALKAH  160 (163)
T ss_dssp             EEETTEEEEEECCEEEEECTTSCEEEEECSCCSTTHHHHHHHHHHHH
T ss_pred             cccccccccCcceEEEEECCCCeEEEEEcCCCcccCHHHHHHHHHHH
Confidence                       8965554 799999888665 3   35566666554

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=98.78  E-value=6.2e-09  Score=80.58  Aligned_cols=74  Identities=15%  Similarity=0.090  Sum_probs=53.1

Q ss_pred             HHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCch----hHHHHHHHcCcCCCCeEEEee
Q 018973          128 EEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESE----KTKELCEREKIKKVPHFSFYK  203 (348)
Q Consensus       128 ~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~----~~~~l~~~~~V~~~Pt~~~~~  203 (348)
                      +.+++++.  .+  .++.|+++||++|+++.+.|+++..++++  |..+|++..+    ...++.+.+|+..+|++  |.
T Consensus         3 ~~~~~~i~--~~--~v~~f~~~~C~~C~~~~~~L~~~~~~~~~--~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~i--~~   74 (105)
T 1kte_A            3 AFVNSKIQ--PG--KVVVFIKPTCPFCRKTQELLSQLPFKEGL--LEFVDITATSDTNEIQDYLQQLTGARTVPRV--FI   74 (105)
T ss_dssp             HHHHHHCC--TT--CEEEEECSSCHHHHHHHHHHHHSCBCTTS--EEEEEGGGSTTHHHHHHHHHHHHSCCCSCEE--EE
T ss_pred             hHHHhhcc--cC--CEEEEEcCCCHhHHHHHHHHHHcCCCCCc--cEEEEccCCCCHHHHHHHHHHHhCCCCcCeE--EE
Confidence            44555553  22  36779999999999999999998777665  5556665531    12468889999999997  34


Q ss_pred             cccccc
Q 018973          204 SMEKIH  209 (348)
Q Consensus       204 ~g~~v~  209 (348)
                      +|+.+.
T Consensus        75 ~g~~i~   80 (105)
T 1kte_A           75 GKECIG   80 (105)
T ss_dssp             TTEEEE
T ss_pred             CCEEEe
Confidence            776654

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=98.77  E-value=4e-08  Score=83.00  Aligned_cols=93  Identities=15%  Similarity=0.248  Sum_probs=71.4

Q ss_pred             CCcEEEEEEeCCCCh-hhhhhhhHHHHHHHHhC---CcEEEEEEECCC----------------------------chhH
Q 018973          252 DQKLIVLDVGLKHCG-PCVKVYPTVIKLSRQMA---GTVVFARMNGDE----------------------------NDSC  299 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~-~C~~~~p~l~~la~~~~---~~v~~~~vd~~~----------------------------~~~~  299 (348)
                      .+++++|+||++||+ .|....+.|.++.++++   .++.++.|.+|.                            .+..
T Consensus        27 ~Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~  106 (170)
T 3me7_A           27 KGKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLEDIKRFQKEYGIDGKGWKVVKAKTSEDL  106 (170)
T ss_dssp             TTSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHHHHHHHHHHTTCCSSSEEEEEESSHHHH
T ss_pred             CCCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHHHHHHHHHHcCCCCCCeEEEeCCCHHHH
Confidence            478999999999997 69999999999999984   358888887651                            0123


Q ss_pred             HHHHHhCCCC---------ccce-EEEEeCCeEEEEEeCC--ChHHHHHHHHHHhCC
Q 018973          300 MQFLRDMNVV---------EVPT-FLFIRDGQIRGRYVGS--GKGELIGEILRYQGV  344 (348)
Q Consensus       300 ~~l~~~~~V~---------~~PT-l~~~~~G~~v~~~~G~--~~~~L~~~l~~~~~~  344 (348)
                      .++++.||+.         ..|+ +++.++|+++..+.|.  +.+++.+.|.+..+.
T Consensus       107 ~~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~~~g~~~~~~~i~~~l~~~~~~  163 (170)
T 3me7_A          107 FKLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDYIYGVNYNYLEFVNALRLARGE  163 (170)
T ss_dssp             HHHHHHTTCCCEEETTEEECCCEEEEECTTSBEEEEEESSSCCHHHHHHHHHHHTTC
T ss_pred             HHHHHHCCeEEecCCCccccCceEEEECCCCeEEEEEeCCCCCHHHHHHHHHHhhcc
Confidence            4566665543         3474 5555899999999997  899999999988653

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=98.77  E-value=5.1e-09  Score=92.09  Aligned_cols=76  Identities=13%  Similarity=0.043  Sum_probs=61.2

Q ss_pred             CCCEEEEEEe-CCCCHHHHhhhhHHHHHHHHc--CCcEEEEEeCCCchh-------------------------HHHHHH
Q 018973          138 KNKLVVVEFA-ASRSLDSSKIYPFMVDLSRQC--NDVEFILVMGDESEK-------------------------TKELCE  189 (348)
Q Consensus       138 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~--~~v~f~~vd~d~~~~-------------------------~~~l~~  189 (348)
                      ++++|||+|| ++||++|+...|.|.+++++|  .++.++.|+.|..+.                         ..++++
T Consensus        51 ~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~  130 (213)
T 2i81_A           51 GKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERNVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSISK  130 (213)
T ss_dssp             TTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHSSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCccCCCceEEECCchHHHH
Confidence            5789999999 999999999999999999998  469999999875221                         245778


Q ss_pred             HcCcC-----CCCeEEEe-ecccccccccc
Q 018973          190 REKIK-----KVPHFSFY-KSMEKIHEEEG  213 (348)
Q Consensus       190 ~~~V~-----~~Pt~~~~-~~g~~v~~~~G  213 (348)
                      .|||.     .+|+++++ ++|+.+..+.|
T Consensus       131 ~ygv~~~~g~~~p~~~lID~~G~i~~~~~~  160 (213)
T 2i81_A          131 DYNVLFDDSVSLRAFVLIDMNGIVQHLLVN  160 (213)
T ss_dssp             HTTCEETTTEECEEEEEECTTSBEEEEEEE
T ss_pred             HhCCccccCCcccEEEEECCCCEEEEEEec
Confidence            88888     78875544 67888776655

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=98.76  E-value=2.8e-09  Score=92.75  Aligned_cols=109  Identities=11%  Similarity=0.145  Sum_probs=66.2

Q ss_pred             HHHHHHHcCcCCCCeEEEeeccccccccccCCCCcccc---c---cccc---CCCccceeecCChhhHHHHhhhcccCCc
Q 018973          184 TKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQLMG---D---VLYY---GDSHSAVVQLHSKEDVEKLIDDHKVDQK  254 (348)
Q Consensus       184 ~~~l~~~~~V~~~Pt~~~~~~g~~v~~~~G~~~~~l~~---~---v~~~---~~~~~~v~~~~s~~~~~~~l~~~~~~~k  254 (348)
                      ....++.+||+++|||++  +|+..-...+...+.+..   +   +..+   ...+..-.......++..+...  ...+
T Consensus        39 ~~~~a~~~gi~gvP~fvi--ngk~~~~~~~~~~~~~~~f~~~~~~l~~~L~s~~~p~~~~~~~~g~~y~~l~~p--~~~~  114 (197)
T 1un2_A           39 QEKAAADVQLRGVPAMFV--NGKYQLNPQGMDTSNMDVFVQQYADTVKYLSEKKGGGTGAQYEDGKQYTTLEKP--VAGA  114 (197)
T ss_dssp             HHHHHHHTTCCSSSEEEE--TTTEEECGGGSCCSSHHHHHHHHHHHHHHHTC---------CCBTTTEEECSSC--CTTC
T ss_pred             HHHHHHHcCCCcCCEEEE--cceEecCccccccccHHHHHHHHHHHHHHHHhCcccccccccCCCCCceEccCC--CCCC
Confidence            345788999999999976  666443322322222211   0   1111   0000000001112223322211  1367


Q ss_pred             EEEEEEeCCCChhhhhhhhHH---HHHHHHhCCcEEEEEEECCCc
Q 018973          255 LIVLDVGLKHCGPCVKVYPTV---IKLSRQMAGTVVFARMNGDEN  296 (348)
Q Consensus       255 ~vvV~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~~~~  296 (348)
                      ++||.||+.||++|+.+.|.+   +++.+.+++++.|.+++++.+
T Consensus       115 ~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~~v~~~~~~v~~~  159 (197)
T 1un2_A          115 PQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNFM  159 (197)
T ss_dssp             CSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEECSSS
T ss_pred             CEEEEEECCCChhHHHhCcccccHHHHHHHCCCCCEEEEeccCcC
Confidence            899999999999999999998   999999988899999999865

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=98.76  E-value=8.4e-09  Score=74.43  Aligned_cols=58  Identities=5%  Similarity=0.054  Sum_probs=46.3

Q ss_pred             EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeecccc
Q 018973          143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEK  207 (348)
Q Consensus       143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~~  207 (348)
                      ++.|+++||++|+++.+.|+++     ++.|..+|+++.++..+..+++++..+|++++  +|+.
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~-----~i~~~~~di~~~~~~~~~~~~~~~~~vP~l~~--~g~~   60 (75)
T 1r7h_A            3 ITLYTKPACVQCTATKKALDRA-----GLAYNTVDISLDDEARDYVMALGYVQAPVVEV--DGEH   60 (75)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-----TCCCEEEETTTCHHHHHHHHHTTCBCCCEEEE--TTEE
T ss_pred             EEEEeCCCChHHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHcCCCccCEEEE--CCeE
Confidence            6789999999999999999875     57888899988654344445899999999874  6653

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=98.75  E-value=2e-08  Score=88.45  Aligned_cols=66  Identities=12%  Similarity=0.073  Sum_probs=50.9

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCC--------------------------------------
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGD--------------------------------------  179 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d--------------------------------------  179 (348)
                      +++++|+.||++||++|+++.|.++++.+.  ++.++.+...                                      
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~l~~~--~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~~~  162 (216)
T 1eej_A           85 QEKHVITVFTDITCGYCHKLHEQMADYNAL--GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPAS  162 (216)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHTTHHHHHHT--TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCCC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHhC--CcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCCCCChhH
Confidence            468999999999999999999999999864  5555544321                                      


Q ss_pred             ---CchhHHHHHHHcCcCCCCeEEEeeccc
Q 018973          180 ---ESEKTKELCEREKIKKVPHFSFYKSME  206 (348)
Q Consensus       180 ---~~~~~~~l~~~~~V~~~Pt~~~~~~g~  206 (348)
                         ..++..++++++||+++||+ ++.+|+
T Consensus       163 ~~~~v~~~~~l~~~~gV~gtPt~-v~~dG~  191 (216)
T 1eej_A          163 CDVDIADHYALGVQLGVSGTPAV-VLSNGT  191 (216)
T ss_dssp             CSCCHHHHHHHHHHHTCCSSSEE-ECTTSC
T ss_pred             HHHHHHHHHHHHHHcCCCccCEE-EEcCCe
Confidence               11235678999999999999 556774

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=98.74  E-value=5.9e-09  Score=87.71  Aligned_cols=42  Identities=21%  Similarity=0.293  Sum_probs=38.2

Q ss_pred             CCCEEEEEEeCCCCH-HHHhhhhHHHHHHHHcC----CcEEEEEeCC
Q 018973          138 KNKLVVVEFAASRSL-DSSKIYPFMVDLSRQCN----DVEFILVMGD  179 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~-~C~~~~p~l~~la~~~~----~v~f~~vd~d  179 (348)
                      ++++|||+||++||+ +|+...|.|.++.++++    ++.++.|++|
T Consensus        32 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d   78 (174)
T 1xzo_A           32 KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVD   78 (174)
T ss_dssp             TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESC
T ss_pred             CCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeC
Confidence            689999999999999 99999999999988764    3999999987

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=98.74  E-value=7e-09  Score=81.93  Aligned_cols=67  Identities=15%  Similarity=0.050  Sum_probs=50.0

Q ss_pred             CCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCch----hHHHHHHHcCcCCCCeEEEeecccccc
Q 018973          139 NKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESE----KTKELCEREKIKKVPHFSFYKSMEKIH  209 (348)
Q Consensus       139 ~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~----~~~~l~~~~~V~~~Pt~~~~~~g~~v~  209 (348)
                      ....|+.|+++||++|+++.+.|+++..++++  |..+|+++.+    ...++.+.+|++.+|++++  +|+.+.
T Consensus        17 ~~~~vv~f~~~~Cp~C~~~~~~L~~~~~~~~~--~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~~ig   87 (114)
T 2hze_A           17 ANNKVTIFVKYTCPFCRNALDILNKFSFKRGA--YEIVDIKEFKPENELRDYFEQITGGKTVPRIFF--GKTSIG   87 (114)
T ss_dssp             CTTCEEEEECTTCHHHHHHHHHHTTSCBCTTS--EEEEEGGGSSSHHHHHHHHHHHHSCCSSCEEEE--TTEEEE
T ss_pred             ccCCEEEEEeCCChhHHHHHHHHHHcCCCcCc--eEEEEccCCCChHHHHHHHHHHhCCCCcCEEEE--CCEEEe
Confidence            34457789999999999999999876444322  7778877653    2246889999999999743  777654

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=98.71  E-value=2.3e-08  Score=84.54  Aligned_cols=41  Identities=15%  Similarity=0.098  Sum_probs=36.3

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeC
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMG  178 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~  178 (348)
                      .++++|+.|+..||++|+.+.|.++++.++++++.+...++
T Consensus        21 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~v~~~~~~~   61 (175)
T 3gyk_A           21 EGDVTVVEFFDYNCPYCRRAMAEVQGLVDADPNVRLVYREW   61 (175)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTEEEEEEEC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHhCCCEEEEEEeC
Confidence            46899999999999999999999999999998877666663

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=98.71  E-value=1.1e-08  Score=85.32  Aligned_cols=53  Identities=11%  Similarity=0.171  Sum_probs=42.9

Q ss_pred             CCCEEEEEEeC-CCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchhHHHHHHH
Q 018973          138 KNKLVVVEFAA-SRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEKTKELCER  190 (348)
Q Consensus       138 ~~k~vvV~F~a-~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~~~~l~~~  190 (348)
                      +++++||.||+ +||++|+...|.|.++.++|.  ++.++.|..|..+..++.+++
T Consensus        34 ~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~   89 (163)
T 3gkn_A           34 AGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSHDNFCAK   89 (163)
T ss_dssp             TTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHH
Confidence            57899999998 999999999999999999885  599999999854433333333

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=98.70  E-value=7.7e-08  Score=81.06  Aligned_cols=89  Identities=10%  Similarity=0.082  Sum_probs=68.6

Q ss_pred             CCcEEEEEEe-CCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCC-------------------C--
Q 018973          252 DQKLIVLDVG-LKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNV-------------------V--  309 (348)
Q Consensus       252 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V-------------------~--  309 (348)
                      .+++++|+|| ++||++|....|.|.++.+++ .++.++.|+.|..+..+++++++++                   .  
T Consensus        46 ~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~-~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~  124 (171)
T 2yzh_A           46 KDVVQVIITVPSLDTPVCETETKKFNEIMAGM-EGVDVTVVSMDLPFAQKRFCESFNIQNVTVASDFRYRDMEKYGVLIG  124 (171)
T ss_dssp             CSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-TTEEEEEEESSCHHHHHHHHHHTTCCSSEEEECTTTCGGGGGTCBBC
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHc-CCceEEEEeCCCHHHHHHHHHHcCCCCeEEeecCccCcHHHhCCEec
Confidence            4789999999 899999999999999999888 6799999998765544555555544                   2  


Q ss_pred             -------ccceE-EEEeCCeEEEEEeC-----C-ChHHHHHHHHHH
Q 018973          310 -------EVPTF-LFIRDGQIRGRYVG-----S-GKGELIGEILRY  341 (348)
Q Consensus       310 -------~~PTl-~~~~~G~~v~~~~G-----~-~~~~L~~~l~~~  341 (348)
                             ..|+. ++.++|+++.++.|     . +.+++.+.|+++
T Consensus       125 ~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~ll~~l~~l  170 (171)
T 2yzh_A          125 EGALKGILARAVFIIDKEGKVAYVQLVPEITEEPNYDEVVNKVKEL  170 (171)
T ss_dssp             SSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCCHHHHHHHHHC
T ss_pred             ccccCCceeeEEEEEcCCCeEEEEEeCCCcCCCCCHHHHHHHHHhh
Confidence                   15865 55579999999875     2 467888888764

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=98.69  E-value=6.6e-08  Score=85.53  Aligned_cols=91  Identities=18%  Similarity=0.156  Sum_probs=69.5

Q ss_pred             CCcEEEEEEe-CCCChhhhhhhhHHHHHHHHhC-CcEEEEEEECCCchhHH-------------------------HHHH
Q 018973          252 DQKLIVLDVG-LKHCGPCVKVYPTVIKLSRQMA-GTVVFARMNGDENDSCM-------------------------QFLR  304 (348)
Q Consensus       252 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~~~~~~-------------------------~l~~  304 (348)
                      .++++||+|| ++||++|....|.|.++.++++ .++.++.|+.|.....+                         ++++
T Consensus        55 ~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~  134 (221)
T 2c0d_A           55 GQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDISK  134 (221)
T ss_dssp             TTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhhhhcCccCCceEEEECCchHHHH
Confidence            3689999999 9999999999999999998885 35889999887533322                         3555


Q ss_pred             hCCC-----CccceE-EEEeCCeEEEEEeCC-----ChHHHHHHHHHHh
Q 018973          305 DMNV-----VEVPTF-LFIRDGQIRGRYVGS-----GKGELIGEILRYQ  342 (348)
Q Consensus       305 ~~~V-----~~~PTl-~~~~~G~~v~~~~G~-----~~~~L~~~l~~~~  342 (348)
                      .|++     ..+|+. ++.++|+++..+.|.     +.+++.+.|+++.
T Consensus       135 ~ygv~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~L~  183 (221)
T 2c0d_A          135 NYNVLYDNSFALRGLFIIDKNGCVRHQTVNDLPIGRNVQEVLRTIDSII  183 (221)
T ss_dssp             HTTCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             HcCCcccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence            5666     357965 444799999988763     5678888887654

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=98.67  E-value=4.1e-08  Score=86.15  Aligned_cols=83  Identities=12%  Similarity=0.137  Sum_probs=63.7

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCC------------------------------------
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDE------------------------------------  295 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~------------------------------------  295 (348)
                      +++++++.|+.+||++|+++.|.+.++.+.   ++.+..+...-                                    
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~~~~~---~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~~~~  161 (211)
T 1t3b_A           85 NEKHVVTVFMDITCHYCHLLHQQLKEYNDL---GITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEV  161 (211)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHTTHHHHHHT---TEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSC
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHhC---CcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCCChH
Confidence            467899999999999999999999997653   35555443320                                    


Q ss_pred             ---c--hhHHHHHHhCCCCccceEEEEeCCeEEEEEeCC-ChHHHHHHHHHH
Q 018973          296 ---N--DSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS-GKGELIGEILRY  341 (348)
Q Consensus       296 ---~--~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~~  341 (348)
                         .  +...++++++||+++||+++ .||+   ++.|. +.++|.++|++.
T Consensus       162 ~~~~~v~~~~~l~~~~gV~gTPt~vi-~nG~---~~~G~~~~~~l~~~l~~~  209 (211)
T 1t3b_A          162 KTPNIVKKHYELGIQFGVRGTPSIVT-STGE---LIGGYLKPADLLRALEET  209 (211)
T ss_dssp             CCSSHHHHHHHHHHHHTCCSSCEEEC-TTSC---CCCSCCCHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHcCCCcCCEEEE-eCCE---EecCCCCHHHHHHHHHhc
Confidence               0  12245788999999999988 7886   56788 999999998764

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=98.66  E-value=2.3e-08  Score=83.21  Aligned_cols=75  Identities=19%  Similarity=0.175  Sum_probs=57.0

Q ss_pred             CCEEEEEEe-CCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhH------------------HHHHHHcCcCCCC-
Q 018973          139 NKLVVVEFA-ASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKT------------------KELCEREKIKKVP-  197 (348)
Q Consensus       139 ~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~------------------~~l~~~~~V~~~P-  197 (348)
                      +++|||+|| ++||++|+...|.|.++.+++.+ -.++.|..|..+..                  .++++.||+...| 
T Consensus        35 ~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~p~  114 (159)
T 2a4v_A           35 NRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYAAVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAKKTPL  114 (159)
T ss_dssp             CSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTCEEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHHHHHHTCBSSSS
T ss_pred             CCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccccc
Confidence            458999987 99999999999999999998753 28888888753222                  3566777787777 


Q ss_pred             ------eEEEeeccccccccccC
Q 018973          198 ------HFSFYKSMEKIHEEEGI  214 (348)
Q Consensus       198 ------t~~~~~~g~~v~~~~G~  214 (348)
                            ++++ ++|+.+..+.|.
T Consensus       115 ~g~~~~~~li-~~G~i~~~~~g~  136 (159)
T 2a4v_A          115 SGSIRSHFIF-VDGKLKFKRVKI  136 (159)
T ss_dssp             SCBCCEEEEE-ETTEEEEEEESC
T ss_pred             CCccceEEEE-cCCEEEEEEccC
Confidence                  5666 888877776664

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=98.65  E-value=1.6e-07  Score=79.96  Aligned_cols=91  Identities=13%  Similarity=0.080  Sum_probs=67.3

Q ss_pred             CCcEEEEEEe-CCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchhHHHH------------------HHhCCCCc-
Q 018973          252 DQKLIVLDVG-LKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDSCMQF------------------LRDMNVVE-  310 (348)
Q Consensus       252 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~~~~l------------------~~~~~V~~-  310 (348)
                      .+++++|+|| ++||++|....|.|.++.+++++ .+.++.|..|.....+++                  ++.|++.. 
T Consensus        50 ~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~~~vv~Vs~D~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~  129 (179)
T 3ixr_A           50 TNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRDSVKSHDSFCAKQGFTFPLVSDSDAILCKAFDVIKE  129 (179)
T ss_dssp             TTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTCHHHHHTTCEEE
T ss_pred             CCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCceEEEECCchHHHHHcCCccc
Confidence            4778999998 99999999999999999999854 488999988865444444                  44466643 


Q ss_pred             -----------cce-EEEEeCCeEEEEEeCC-C---hHHHHHHHHHHh
Q 018973          311 -----------VPT-FLFIRDGQIRGRYVGS-G---KGELIGEILRYQ  342 (348)
Q Consensus       311 -----------~PT-l~~~~~G~~v~~~~G~-~---~~~L~~~l~~~~  342 (348)
                                 .|+ +++.++|+++..+.+. .   .+++.+.|+++.
T Consensus       130 ~~~~g~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~il~~l~~l~  177 (179)
T 3ixr_A          130 KTMYGRQVIGIERSTFLIGPTHRIVEAWRQVKVPGHAEEVLNKLKAHA  177 (179)
T ss_dssp             ECCC--CEEEECCEEEEECTTSBEEEEECSCCSTTHHHHHHHHHHHHH
T ss_pred             ccccCcccCCcceEEEEECCCCEEEEEEcCCCCCCCHHHHHHHHHHHh
Confidence                       475 5555899999888665 2   456666666543

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=98.65  E-value=1.2e-07  Score=81.41  Aligned_cols=91  Identities=11%  Similarity=0.025  Sum_probs=68.5

Q ss_pred             CCcEEEEEEeC-CCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchhHHHHHH----------------------hCC
Q 018973          252 DQKLIVLDVGL-KHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDSCMQFLR----------------------DMN  307 (348)
Q Consensus       252 ~~k~vvV~F~a-~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~~~~l~~----------------------~~~  307 (348)
                      .+++++|+||+ +||++|....|.|.++.+++++ ++.++.|+.+.....+++++                      .|+
T Consensus        29 ~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~yg  108 (186)
T 1n8j_A           29 EGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD  108 (186)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHTT
T ss_pred             CCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCcccCCceeEEECCchHHHHHhC
Confidence            36899999995 9999999999999999988853 58999998875443334444                      455


Q ss_pred             CC------ccceEE-EEeCCeEEEEEeCC-----ChHHHHHHHHHHh
Q 018973          308 VV------EVPTFL-FIRDGQIRGRYVGS-----GKGELIGEILRYQ  342 (348)
Q Consensus       308 V~------~~PTl~-~~~~G~~v~~~~G~-----~~~~L~~~l~~~~  342 (348)
                      +.      .+|+.+ +.++|+++.++.|.     +.+++.+.|+++.
T Consensus       109 v~~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~~l~~~l~~l~  155 (186)
T 1n8j_A          109 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQ  155 (186)
T ss_dssp             CEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             CccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            54      269654 44799999988764     4778888887764

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=98.64  E-value=3.1e-08  Score=82.61  Aligned_cols=90  Identities=19%  Similarity=0.217  Sum_probs=59.8

Q ss_pred             CCcEEEEEEe-CCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchhHHHHH------------------HhCCCC--
Q 018973          252 DQKLIVLDVG-LKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDSCMQFL------------------RDMNVV--  309 (348)
Q Consensus       252 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~~~~l~------------------~~~~V~--  309 (348)
                      .+++++|+|| ++||++|....|.+.++.+++.+ .+.++.|+.|.....++++                  ++|||.  
T Consensus        29 ~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~~~~v~vs~d~~~~~~~~~~~~~~~~p~l~D~~~~v~~~ygv~~~  108 (157)
T 4g2e_A           29 KGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVNAVVLGISVDPPFSNKAFKEHNKLNFTILSDYNREVVKKYNVAWE  108 (157)
T ss_dssp             TTSCEEEEECSCTTCCC------CCSCGGGGGGGCSSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCEEE
T ss_pred             CCCeEEEEecCCCCCCccccchhhcccccccccccCceEeeecccchhHHHHHHHHcCCcEEEEEcCCcHHHHHcCCccc
Confidence            4788999999 99999999999999888888753 4888888887655444444                  445552  


Q ss_pred             ---------ccc-eEEEEeCCeEEEEEeCC------ChHHHHHHHHHH
Q 018973          310 ---------EVP-TFLFIRDGQIRGRYVGS------GKGELIGEILRY  341 (348)
Q Consensus       310 ---------~~P-Tl~~~~~G~~v~~~~G~------~~~~L~~~l~~~  341 (348)
                               ..| |+++.++|+++....|.      +.+++.+.|+.+
T Consensus       109 ~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~L  156 (157)
T 4g2e_A          109 FPALPGYVLAKRAVFVIDKEGKVRYKWVSDDPTKEPPYDEIEKVVKSL  156 (157)
T ss_dssp             CTTSTTCEEECEEEEEECTTSBEEEEEEESSTTCCCCHHHHHHHHHHT
T ss_pred             cccCCCcceeeeeEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHh
Confidence                     346 45666899998876542      456777777653

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.63  E-value=6.4e-08  Score=78.30  Aligned_cols=74  Identities=18%  Similarity=0.188  Sum_probs=53.6

Q ss_pred             CHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCc---hh-HHHHHHHcCcCCCCeEEE
Q 018973          126 SIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDES---EK-TKELCEREKIKKVPHFSF  201 (348)
Q Consensus       126 s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~---~~-~~~l~~~~~V~~~Pt~~~  201 (348)
                      ..+.+++++..  ++ |+ .|+++||++|+++.+.|+++.     +.|..+|+|..   ++ ..++.+.+++..+|+++ 
T Consensus        16 ~~~~~~~~i~~--~~-vv-vf~~~~Cp~C~~~~~~L~~~~-----i~~~~vdid~~~~~~~~~~~l~~~~g~~~vP~l~-   85 (130)
T 2cq9_A           16 PVNQIQETISD--NC-VV-IFSKTSCSYCTMAKKLFHDMN-----VNYKVVELDLLEYGNQFQDALYKMTGERTVPRIF-   85 (130)
T ss_dssp             HHHHHHHHHHH--SS-EE-EEECSSCSHHHHHHHHHHHHT-----CCCEEEETTTSTTHHHHHHHHHHHHSSCCSSEEE-
T ss_pred             HHHHHHHHHcC--Cc-EE-EEEcCCChHHHHHHHHHHHcC-----CCcEEEECcCCcCcHHHHHHHHHHhCCCCcCEEE-
Confidence            46777888763  33 43 399999999999999999863     45566777754   21 13588899999999984 


Q ss_pred             eeccccccc
Q 018973          202 YKSMEKIHE  210 (348)
Q Consensus       202 ~~~g~~v~~  210 (348)
                       .+|+.+..
T Consensus        86 -i~G~~igg   93 (130)
T 2cq9_A           86 -VNGTFIGG   93 (130)
T ss_dssp             -ETTEEEEE
T ss_pred             -ECCEEEcC
Confidence             37776543

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=98.63  E-value=1.2e-07  Score=83.14  Aligned_cols=91  Identities=13%  Similarity=0.112  Sum_probs=69.5

Q ss_pred             CCcEEEEEEe-CCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchhHH-------------------------HHHH
Q 018973          252 DQKLIVLDVG-LKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDSCM-------------------------QFLR  304 (348)
Q Consensus       252 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~~~-------------------------~l~~  304 (348)
                      .+++++|+|| ++||++|....|.|.++.+++++ ++.++.|+.|.....+                         ++++
T Consensus        47 ~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~  126 (211)
T 2pn8_A           47 RGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISK  126 (211)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHHHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhccCccCCceEEEECCchHHHH
Confidence            4789999999 99999999999999999999853 5889988876433222                         3556


Q ss_pred             hCCCC------ccceE-EEEeCCeEEEEEeCC-----ChHHHHHHHHHHh
Q 018973          305 DMNVV------EVPTF-LFIRDGQIRGRYVGS-----GKGELIGEILRYQ  342 (348)
Q Consensus       305 ~~~V~------~~PTl-~~~~~G~~v~~~~G~-----~~~~L~~~l~~~~  342 (348)
                      .|++.      .+|+. ++.++|+++..+.|.     +.+++.+.|+++.
T Consensus       127 ~ygv~~~~~g~~~p~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~l~  176 (211)
T 2pn8_A          127 DYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQ  176 (211)
T ss_dssp             HTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HcCCcccCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence            67774      58965 445799999988663     4578888887654

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=98.63  E-value=6.1e-08  Score=85.37  Aligned_cols=59  Identities=8%  Similarity=-0.035  Sum_probs=47.3

Q ss_pred             cCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCCC--------chhHHHHHH------HcCcCCCC
Q 018973          137 AKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGDE--------SEKTKELCE------REKIKKVP  197 (348)
Q Consensus       137 ~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d~--------~~~~~~l~~------~~~V~~~P  197 (348)
                      .++|+|||+|||+||++|+ ..|.|+++.++|.+  +.++.|.+++        .++.++.++      +|++. +|
T Consensus        54 ~~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~g~~Vlgvs~d~f~~~e~~~~~~i~~f~~~~~~~~~~~~~-fp  128 (215)
T 2i3y_A           54 YVGKHILFVNVATYCGLTA-QYPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLKYVRPGGGFVPS-FQ  128 (215)
T ss_dssp             GTTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHTSSCTTCCCS-SE
T ss_pred             hCCCEEEEEEeCCCCCChH-hHHHHHHHHHHhccCCeEEEEEEccccCcCCCCCHHHHHHHHHhccchhccCcc-ce
Confidence            3789999999999999999 89999999999864  8999998763        133456777      77763 45

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=98.63  E-value=1e-07  Score=81.96  Aligned_cols=89  Identities=20%  Similarity=0.284  Sum_probs=69.2

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCc-----------------------------------
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN-----------------------------------  296 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~-----------------------------------  296 (348)
                      +++++|+.||..||++|+.+.|.+.++.+++++++.|..+.+.-.                                   
T Consensus        24 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~~~~~~~~~aa~a~~aa~~~g~~~~~~~~lf~~~~~~~~  103 (192)
T 3h93_A           24 PGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPADVHFVRLPALFGGIWNVHGQMFLTLESMGVEHDVHNAVFEAIHKEHK  103 (192)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEECCCSTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTSCC
T ss_pred             CCCCEEEEEECCCChhHHHhhHHHHHHHHhCCCCeEEEEEehhhccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence            468999999999999999999999999999988888887765310                                   


Q ss_pred             -----h------------------------------hHHHHHHhCCCCccceEEEEeCCeEEEEEeCC-ChHHHHHHHHH
Q 018973          297 -----D------------------------------SCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS-GKGELIGEILR  340 (348)
Q Consensus       297 -----~------------------------------~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~  340 (348)
                           +                              ...++++++||.++||+++  +|+......|. +.+.|.+.|+.
T Consensus       104 ~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~v--ng~~~~~~~G~~~~e~l~~~i~~  181 (192)
T 3h93_A          104 KLATPEEMADFLAGKGVDKEKFLSTYNSFAIKGQMEKAKKLAMAYQVTGVPTMVV--NGKYRFDIGSAGGPEETLKLADY  181 (192)
T ss_dssp             CCCSHHHHHHHHHTTTCCHHHHHHHHTCHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTTEEEEHHHHTSHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHcCCCHHHHHHHhhCHHHHHHHHHHHHHHHHhCCCCCCeEEE--CCEEEecccccCCHHHHHHHHHH
Confidence                 0                              0112455689999999988  88866555577 88888888876


Q ss_pred             Hh
Q 018973          341 YQ  342 (348)
Q Consensus       341 ~~  342 (348)
                      ++
T Consensus       182 l~  183 (192)
T 3h93_A          182 LI  183 (192)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=98.62  E-value=1.5e-07  Score=84.20  Aligned_cols=88  Identities=14%  Similarity=0.206  Sum_probs=67.0

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCC------------------------------------
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDE------------------------------------  295 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~------------------------------------  295 (348)
                      +.+.+++.|+.+||++|+++.+.+.++.+.  +++.+..+...-                                    
T Consensus        96 ~ak~~v~~F~D~~Cp~C~~~~~~l~~~~~~--g~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~l~~  173 (241)
T 1v58_A           96 DAPVIVYVFADPFCPYCKQFWQQARPWVDS--GKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLNV  173 (241)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHT--TSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCCC
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHHhC--CcEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHHHhccCCCCc
Confidence            467789999999999999999999888765  467777665420                                    


Q ss_pred             ----c-------hhHHHHHHhCCCCccceEEEEe-CCeEEEEEeCC-ChHHHHHHHHHHh
Q 018973          296 ----N-------DSCMQFLRDMNVVEVPTFLFIR-DGQIRGRYVGS-GKGELIGEILRYQ  342 (348)
Q Consensus       296 ----~-------~~~~~l~~~~~V~~~PTl~~~~-~G~~v~~~~G~-~~~~L~~~l~~~~  342 (348)
                          .       +...++++++||.++||+++.. +|+. .++.|. +.++|.+.|++..
T Consensus       174 ~~~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~G~~-~~~~G~~~~~~L~~~l~~~~  232 (241)
T 1v58_A          174 PANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTL-QQAVGLPDQKTLNIIMGNKL  232 (241)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEE-EEEESSCCHHHHHHHTTC--
T ss_pred             cccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCE-EEecCCCCHHHHHHHHHHHH
Confidence                0       0123467889999999999986 5864 577898 9999998887654

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=98.62  E-value=1.3e-07  Score=81.57  Aligned_cols=43  Identities=21%  Similarity=0.305  Sum_probs=39.7

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECC
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGD  294 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~  294 (348)
                      +++++|+.||++||++|+.+.|.+.++.+++++++.|..++++
T Consensus        24 ~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~~~~   66 (195)
T 3hd5_A           24 PGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQDVVLKQVPIA   66 (195)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEECC
T ss_pred             CCCeEEEEEECCCCccHHHhhHHHHHHHHHCCCCeEEEEEecc
Confidence            4789999999999999999999999999999878999999885

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=98.62  E-value=7.3e-08  Score=79.66  Aligned_cols=73  Identities=18%  Similarity=0.221  Sum_probs=53.0

Q ss_pred             CHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCc---hh-HHHHHHHcCcCCCCeEEE
Q 018973          126 SIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDES---EK-TKELCEREKIKKVPHFSF  201 (348)
Q Consensus       126 s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~---~~-~~~l~~~~~V~~~Pt~~~  201 (348)
                      ..+.+++++.+  ++ |+| |+++||++|+++.+.|+++.     +.|..+|+|..   ++ ..++++.+|+..+|+++ 
T Consensus        38 ~~~~~~~~i~~--~~-Vvv-f~~~~Cp~C~~~k~~L~~~~-----i~~~~vdId~~~~~~~~~~~L~~~~g~~tvP~if-  107 (146)
T 2ht9_A           38 PVNQIQETISD--NC-VVI-FSKTSCSYCTMAKKLFHDMN-----VNYKVVELDLLEYGNQFQDALYKMTGERTVPRIF-  107 (146)
T ss_dssp             CHHHHHHHHHH--CS-EEE-EECTTCHHHHHHHHHHHHHT-----CCCEEEEGGGCTTHHHHHHHHHHHHSCCCSCEEE-
T ss_pred             HHHHHHHHhcC--CC-EEE-EECCCChhHHHHHHHHHHcC-----CCeEEEECccCcCCHHHHHHHHHHhCCCCcCeEE-
Confidence            46788888873  33 444 99999999999999999873     34556666653   21 13588899999999984 


Q ss_pred             eecccccc
Q 018973          202 YKSMEKIH  209 (348)
Q Consensus       202 ~~~g~~v~  209 (348)
                       .+|+.+.
T Consensus       108 -i~G~~ig  114 (146)
T 2ht9_A          108 -VNGTFIG  114 (146)
T ss_dssp             -ETTEEEE
T ss_pred             -ECCEEEe
Confidence             4777654

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=98.61  E-value=1.8e-07  Score=78.22  Aligned_cols=88  Identities=18%  Similarity=0.080  Sum_probs=65.6

Q ss_pred             CCcEEEEEEeC-CCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHH--------------------HHHhCCCC-
Q 018973          252 DQKLIVLDVGL-KHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQ--------------------FLRDMNVV-  309 (348)
Q Consensus       252 ~~k~vvV~F~a-~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~--------------------l~~~~~V~-  309 (348)
                      .+++++|+||+ +||++|....|.|.++.+++ .++.++.|+.|..+..++                    +++.|++. 
T Consensus        41 ~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~-~~v~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~  119 (163)
T 1psq_A           41 DGKKKVLSVVPSIDTGICSTQTRRFNEELAGL-DNTVVLTVSMDLPFAQKRWCGAEGLDNAIMLSDYFDHSFGRDYALLI  119 (163)
T ss_dssp             TTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-TTEEEEEEESSCHHHHHHHHHHHTCTTSEEEECTTTCHHHHHHTCBC
T ss_pred             CCCEEEEEEECCCCCCccHHHHHHHHHHHHHc-CCcEEEEEECCCHHHHHHHHHhcCCCCcEEecCCchhHHHHHhCCcc
Confidence            47899999995 99999999999999999888 679999998875433333                    44455554 


Q ss_pred             ---c--cceE-EEEeCCeEEEEEeCC------ChHHHHHHHHH
Q 018973          310 ---E--VPTF-LFIRDGQIRGRYVGS------GKGELIGEILR  340 (348)
Q Consensus       310 ---~--~PTl-~~~~~G~~v~~~~G~------~~~~L~~~l~~  340 (348)
                         +  .|+. ++.++|+++.++.|.      +.+++.+.|++
T Consensus       120 ~~~g~~~p~~~liD~~G~i~~~~~g~~~~~~~~~~~~l~~l~~  162 (163)
T 1psq_A          120 NEWHLLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKA  162 (163)
T ss_dssp             TTTCSBCCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHH
T ss_pred             ccCCceEEEEEEEcCCCeEEEEEecCCcCCCCCHHHHHHHHHh
Confidence               2  3865 555799999999774      23677777664

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=98.61  E-value=2e-07  Score=70.71  Aligned_cols=79  Identities=16%  Similarity=0.404  Sum_probs=61.7

Q ss_pred             EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhC--CCCccceEEEEeCCeEEEEEeCCChHHH
Q 018973          257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDM--NVVEVPTFLFIRDGQIRGRYVGSGKGEL  334 (348)
Q Consensus       257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~--~V~~~PTl~~~~~G~~v~~~~G~~~~~L  334 (348)
                      |+.|+.+||++|.+.+..|.+      ..+.|..+|++++++..+...+.  |.+.+|++++ .||+..   .|.+.++|
T Consensus         6 I~vYs~~~Cp~C~~aK~~L~~------~gi~y~~idi~~d~~~~~~~~~~~~G~~tVP~I~i-~Dg~~l---~~~~~~el   75 (92)
T 2lqo_A            6 LTIYTTSWCGYCLRLKTALTA------NRIAYDEVDIEHNRAAAEFVGSVNGGNRTVPTVKF-ADGSTL---TNPSADEV   75 (92)
T ss_dssp             EEEEECTTCSSHHHHHHHHHH------TTCCCEEEETTTCHHHHHHHHHHSSSSSCSCEEEE-TTSCEE---ESCCHHHH
T ss_pred             EEEEcCCCCHhHHHHHHHHHh------cCCceEEEEcCCCHHHHHHHHHHcCCCCEeCEEEE-eCCEEE---eCCCHHHH
Confidence            667899999999998776665      24788899999888755554443  7889998754 677653   57789999


Q ss_pred             HHHHHHHhCCC
Q 018973          335 IGEILRYQGVR  345 (348)
Q Consensus       335 ~~~l~~~~~~~  345 (348)
                      .++|.++.|++
T Consensus        76 ~~~L~el~gL~   86 (92)
T 2lqo_A           76 KAKLVKIAGLE   86 (92)
T ss_dssp             HHHHHHHHCCS
T ss_pred             HHHHHHhcCCc
Confidence            99999999875

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=98.57  E-value=3.3e-08  Score=76.42  Aligned_cols=79  Identities=14%  Similarity=0.124  Sum_probs=53.8

Q ss_pred             EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch---hH-HHHHHhCCCCccceEEEEeCCeEEEEEeC---C
Q 018973          257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND---SC-MQFLRDMNVVEVPTFLFIRDGQIRGRYVG---S  329 (348)
Q Consensus       257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~---~~-~~l~~~~~V~~~PTl~~~~~G~~v~~~~G---~  329 (348)
                      ++.|+++||++|+.+.+.|.++...+++   |..+|++..+   +. .++.+.+++.++|++  |.+|+.++.+..   .
T Consensus        14 v~~f~~~~C~~C~~~~~~L~~~~~~~~~---~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~i--~~~g~~i~g~~~~~~~   88 (105)
T 1kte_A           14 VVVFIKPTCPFCRKTQELLSQLPFKEGL---LEFVDITATSDTNEIQDYLQQLTGARTVPRV--FIGKECIGGCTDLESM   88 (105)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHSCBCTTS---EEEEEGGGSTTHHHHHHHHHHHHSCCCSCEE--EETTEEEESHHHHHHH
T ss_pred             EEEEEcCCCHhHHHHHHHHHHcCCCCCc---cEEEEccCCCCHHHHHHHHHHHhCCCCcCeE--EECCEEEeccHHHHHH
Confidence            6679999999999999999876555432   5556666542   21 347888999999997  348887653221   1


Q ss_pred             -ChHHHHHHHHH
Q 018973          330 -GKGELIGEILR  340 (348)
Q Consensus       330 -~~~~L~~~l~~  340 (348)
                       ...+|.++|..
T Consensus        89 ~~~g~L~~~l~~  100 (105)
T 1kte_A           89 HKRGELLTRLQQ  100 (105)
T ss_dssp             HHHTHHHHHHHH
T ss_pred             HHCCcHHHHHHH
Confidence             24566666654

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=98.57  E-value=9.7e-08  Score=79.84  Aligned_cols=61  Identities=13%  Similarity=0.016  Sum_probs=52.5

Q ss_pred             CCCEEEEEEeC-CCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCe
Q 018973          138 KNKLVVVEFAA-SRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPH  198 (348)
Q Consensus       138 ~~k~vvV~F~a-~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt  198 (348)
                      +++++||.||+ +||++|+...|.|.++.+++.++.++.|..|..+..++.++++++..+|.
T Consensus        41 ~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~  102 (163)
T 1psq_A           41 DGKKKVLSVVPSIDTGICSTQTRRFNEELAGLDNTVVLTVSMDLPFAQKRWCGAEGLDNAIM  102 (163)
T ss_dssp             TTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCTTEEEEEEESSCHHHHHHHHHHHTCTTSEE
T ss_pred             CCCEEEEEEECCCCCCccHHHHHHHHHHHHHcCCcEEEEEECCCHHHHHHHHHhcCCCCcEE
Confidence            67899999995 99999999999999999999779999999987666677888888854553

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=98.57  E-value=3.3e-08  Score=83.19  Aligned_cols=92  Identities=17%  Similarity=0.155  Sum_probs=67.9

Q ss_pred             CCcEEEEEEe-CCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchhHHH------------------HHHhCCCC--
Q 018973          252 DQKLIVLDVG-LKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDSCMQ------------------FLRDMNVV--  309 (348)
Q Consensus       252 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~~~~------------------l~~~~~V~--  309 (348)
                      .+++++|.|| ++||++|....|.|.++.+++.+ .+.++.|+.|.....++                  +++.|||.  
T Consensus        32 ~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~fp~l~D~~~~v~~~ygv~~~  111 (164)
T 4gqc_A           32 RGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIKLYNVYHE  111 (164)
T ss_dssp             TSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGSSSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCEEE
T ss_pred             CCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhccCceEEEecCCCHHHHHHHHHhcCcccceeecCchHHHHHcCCccc
Confidence            3688888888 99999999999999888888853 38888888876544444                  44456653  


Q ss_pred             --------ccc-eEEEEeCCeEEEEEeCC------ChHHHHHHHHHHhC
Q 018973          310 --------EVP-TFLFIRDGQIRGRYVGS------GKGELIGEILRYQG  343 (348)
Q Consensus       310 --------~~P-Tl~~~~~G~~v~~~~G~------~~~~L~~~l~~~~~  343 (348)
                              ..| ||++.++|+++..+.+.      +.+++.+.++++.+
T Consensus       112 ~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~l~~  160 (164)
T 4gqc_A          112 DLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIAG  160 (164)
T ss_dssp             EETTEEEEECCEEEEECTTSBEEEEEECSCTTCCCCHHHHHHHHHHHHH
T ss_pred             ccccCcCCeeeEEEEECCCCEEEEEEEeCCCCCCCCHHHHHHHHHHHhc
Confidence                    257 46666899999877643      46788888877654

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=98.57  E-value=1.8e-07  Score=80.53  Aligned_cols=42  Identities=24%  Similarity=0.249  Sum_probs=38.7

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCC
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGD  179 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d  179 (348)
                      .++++||+||++||++|+.+.|.++++.+++++ +.|..++++
T Consensus        24 ~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~~~~   66 (195)
T 3hd5_A           24 PGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQDVVLKQVPIA   66 (195)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEECC
T ss_pred             CCCeEEEEEECCCCccHHHhhHHHHHHHHHCCCCeEEEEEecc
Confidence            478999999999999999999999999999986 888888875

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=98.55  E-value=7.3e-08  Score=82.11  Aligned_cols=57  Identities=18%  Similarity=0.167  Sum_probs=46.9

Q ss_pred             CCCEEEEEEe-CCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCCCchhHHHHHHHcCcC
Q 018973          138 KNKLVVVEFA-ASRSLDSSKIYPFMVDLSRQCND--VEFILVMGDESEKTKELCEREKIK  194 (348)
Q Consensus       138 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d~~~~~~~l~~~~~V~  194 (348)
                      ++++|||.|| ++||++|+...|.|.++.++|.+  +.++.|..|..+...+.++++++.
T Consensus        50 ~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~~~vv~Vs~D~~~~~~~~~~~~~~~  109 (179)
T 3ixr_A           50 TNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRDSVKSHDSFCAKQGFT  109 (179)
T ss_dssp             TTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESCCHHHHHHHHHHHTCC
T ss_pred             CCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCc
Confidence            6789999998 99999999999999999998854  899999998755555566666553

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=98.54  E-value=1.6e-07  Score=82.33  Aligned_cols=66  Identities=14%  Similarity=0.076  Sum_probs=50.6

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCC--------------------------------------
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGD--------------------------------------  179 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d--------------------------------------  179 (348)
                      .++++|+.|+.+||++|+++.|.++++.+.  ++.+..+...                                      
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~~~~~--~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~~~~~  162 (211)
T 1t3b_A           85 NEKHVVTVFMDITCHYCHLLHQQLKEYNDL--GITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEVK  162 (211)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHTTHHHHHHT--TEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSCC
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHhC--CcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCCChHH
Confidence            368999999999999999999999998663  4555443321                                      


Q ss_pred             --C-chhHHHHHHHcCcCCCCeEEEeeccc
Q 018973          180 --E-SEKTKELCEREKIKKVPHFSFYKSME  206 (348)
Q Consensus       180 --~-~~~~~~l~~~~~V~~~Pt~~~~~~g~  206 (348)
                        . .++..++++++||+++||+++ .||+
T Consensus       163 ~~~~v~~~~~l~~~~gV~gTPt~vi-~nG~  191 (211)
T 1t3b_A          163 TPNIVKKHYELGIQFGVRGTPSIVT-STGE  191 (211)
T ss_dssp             CSSHHHHHHHHHHHHTCCSSCEEEC-TTSC
T ss_pred             HHHHHHHHHHHHHHcCCCcCCEEEE-eCCE
Confidence              0 113467889999999999988 6776

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=98.54  E-value=8.1e-08  Score=76.35  Aligned_cols=75  Identities=12%  Similarity=0.165  Sum_probs=54.5

Q ss_pred             HHHHHHHHHhcCCCEEEEEEeCCCCHHHHhh-hhHHHHHHHHcCCcEEEEEeCCCch----hHHHHHHHcCcCCCCeEEE
Q 018973          127 IEEFDEALRLAKNKLVVVEFAASRSLDSSKI-YPFMVDLSRQCNDVEFILVMGDESE----KTKELCEREKIKKVPHFSF  201 (348)
Q Consensus       127 ~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~-~p~l~~la~~~~~v~f~~vd~d~~~----~~~~l~~~~~V~~~Pt~~~  201 (348)
                      .+.+++++..  ++  |+.|+++||++|+++ .+.|+++..  .++.|..+|+|+.+    ...++.+.+|++.+|++  
T Consensus        15 ~~~~~~~i~~--~~--Vvvf~~~~Cp~C~~alk~~L~~~~~--~~i~~~~vdid~~~~~~~~~~~l~~~~g~~tvP~v--   86 (118)
T 3c1r_A           15 IKHVKDLIAE--NE--IFVASKTYCPYCHAALNTLFEKLKV--PRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNI--   86 (118)
T ss_dssp             HHHHHHHHHH--SS--EEEEECSSCHHHHHHHHHHHTTSCC--CGGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--
T ss_pred             HHHHHHHHcc--Cc--EEEEEcCCCcCHHHHHHHHHHHcCC--CCCCeEEEECccCCChHHHHHHHHHHhCCCCcCEE--
Confidence            4566666653  23  556999999999999 888876541  23788888888653    23468889999999987  


Q ss_pred             eecccccc
Q 018973          202 YKSMEKIH  209 (348)
Q Consensus       202 ~~~g~~v~  209 (348)
                      |.+|+.+.
T Consensus        87 fi~g~~ig   94 (118)
T 3c1r_A           87 YINGKHIG   94 (118)
T ss_dssp             EETTEEEE
T ss_pred             EECCEEEE
Confidence            45777654

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=98.53  E-value=3e-08  Score=82.75  Aligned_cols=58  Identities=22%  Similarity=0.188  Sum_probs=42.6

Q ss_pred             cCCCEEEEEEe-CCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchhHHHHHHHcCcC
Q 018973          137 AKNKLVVVEFA-ASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEKTKELCEREKIK  194 (348)
Q Consensus       137 ~~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~~~~l~~~~~V~  194 (348)
                      .++|+|||.|| ++||++|+...|.|.++.+++.  ++.++.|..|..+..++.++++++.
T Consensus        28 ~~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~~~~v~vs~d~~~~~~~~~~~~~~~   88 (157)
T 4g2e_A           28 LKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVNAVVLGISVDPPFSNKAFKEHNKLN   88 (157)
T ss_dssp             GTTSCEEEEECSCTTCCC------CCSCGGGGGGGCSSEEEEEESSCHHHHHHHHHHTTCC
T ss_pred             HCCCeEEEEecCCCCCCccccchhhcccccccccccCceEeeecccchhHHHHHHHHcCCc
Confidence            36899999999 9999999999999999998875  4899999998766566677776663

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=98.53  E-value=1.8e-08  Score=79.48  Aligned_cols=80  Identities=18%  Similarity=0.128  Sum_probs=54.3

Q ss_pred             EEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch---h-HHHHHHhCCCCccceEEEEeCCeEEEEEeC---
Q 018973          256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND---S-CMQFLRDMNVVEVPTFLFIRDGQIRGRYVG---  328 (348)
Q Consensus       256 vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~---~-~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G---  328 (348)
                      .++.|+++||++|+.+.+.|.++...+ ++  |..+|+++.+   + ..++.+.+++.++|++++  +|+.++.+.+   
T Consensus        20 ~vv~f~~~~Cp~C~~~~~~L~~~~~~~-~~--~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~~igg~~~~~~   94 (114)
T 2hze_A           20 KVTIFVKYTCPFCRNALDILNKFSFKR-GA--YEIVDIKEFKPENELRDYFEQITGGKTVPRIFF--GKTSIGGYSDLLE   94 (114)
T ss_dssp             CEEEEECTTCHHHHHHHHHHTTSCBCT-TS--EEEEEGGGSSSHHHHHHHHHHHHSCCSSCEEEE--TTEEEESHHHHHH
T ss_pred             CEEEEEeCCChhHHHHHHHHHHcCCCc-Cc--eEEEEccCCCChHHHHHHHHHHhCCCCcCEEEE--CCEEEeCcHHHHH
Confidence            467799999999999988887643221 11  7778887663   1 235888999999998744  8887653322   


Q ss_pred             C-ChHHHHHHHHH
Q 018973          329 S-GKGELIGEILR  340 (348)
Q Consensus       329 ~-~~~~L~~~l~~  340 (348)
                      . +..+|.++|.+
T Consensus        95 ~~~~~~L~~~L~~  107 (114)
T 2hze_A           95 IDNMDALGDILSS  107 (114)
T ss_dssp             HHHTTCHHHHHHH
T ss_pred             HHHCChHHHHHHH
Confidence            1 23456666654

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=98.52  E-value=3.9e-07  Score=81.22  Aligned_cols=77  Identities=13%  Similarity=0.194  Sum_probs=59.3

Q ss_pred             CCcEEEEEEe-CCCChhhh-hhhhHHHHHHHHhCC-cE-EEEEEECCCchhHHH-------------------HHHhCCC
Q 018973          252 DQKLIVLDVG-LKHCGPCV-KVYPTVIKLSRQMAG-TV-VFARMNGDENDSCMQ-------------------FLRDMNV  308 (348)
Q Consensus       252 ~~k~vvV~F~-a~wC~~C~-~~~p~l~~la~~~~~-~v-~~~~vd~~~~~~~~~-------------------l~~~~~V  308 (348)
                      .+++++|+|| ++||++|. ...|.|.++.+++++ .+ .++.|+.+.....++                   +++.||+
T Consensus        32 ~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv  111 (241)
T 1nm3_A           32 DNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVNDTFVMNAWKEDEKSENISFIPDGNGEFTEGMGM  111 (241)
T ss_dssp             TTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTSEEEECTTSHHHHHTTC
T ss_pred             CCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEcCCHHHHHHHHHhcCCCceEEEECCCcHHHHHhCc
Confidence            3688999999 99999999 899999999988853 48 889998875433333                   4455666


Q ss_pred             C-----------ccc-eEEEEeCCeEEEEEeCC
Q 018973          309 V-----------EVP-TFLFIRDGQIRGRYVGS  329 (348)
Q Consensus       309 ~-----------~~P-Tl~~~~~G~~v~~~~G~  329 (348)
                      .           ..| |+++ ++|+++..+.|.
T Consensus       112 ~~~~~~~g~~~~~~p~t~li-~~G~i~~~~~~~  143 (241)
T 1nm3_A          112 LVGKEDLGFGKRSWRYSMLV-KNGVVEKMFIEP  143 (241)
T ss_dssp             EEECTTTTCCEEECCEEEEE-ETTEEEEEEECC
T ss_pred             eeecccccCcccceeEEEEE-ECCEEEEEEEec
Confidence            4           347 4666 999999998886

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=98.52  E-value=1.6e-07  Score=82.19  Aligned_cols=58  Identities=10%  Similarity=-0.054  Sum_probs=46.2

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCCC--------chhHHHHHH------HcCcCCCC
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGDE--------SEKTKELCE------REKIKKVP  197 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d~--------~~~~~~l~~------~~~V~~~P  197 (348)
                      ++|+|||+|||+||++| ...|.|.++.++|.+  +.++.|.+|+        .++.++.++      +|++. +|
T Consensus        37 kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~g~~vlgvs~d~f~~~e~~~~~~i~~f~~~~~~~~~~~~~-fp  110 (207)
T 2r37_A           37 AGKYVLFVNVASYGGLT-GQYIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPN-FQ  110 (207)
T ss_dssp             TTSEEEEEEECSSSTTT-THHHHHHHHHHHHGGGTEEEEEEECCCBTTCCCSCHHHHHHHHHHTSSCTTCCCS-SE
T ss_pred             CCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccCCEEEEEEECcccCcCCCCCHHHHHHHHHhcchhhccCcc-ce
Confidence            78999999999999999 678999999999864  8999998652        134456676      77764 45

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=98.52  E-value=2.7e-07  Score=77.27  Aligned_cols=76  Identities=9%  Similarity=0.071  Sum_probs=59.6

Q ss_pred             CCcEEEEEEe-CCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchh--------------------HHHHHHhCCCCc
Q 018973          252 DQKLIVLDVG-LKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDS--------------------CMQFLRDMNVVE  310 (348)
Q Consensus       252 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~--------------------~~~l~~~~~V~~  310 (348)
                      .+++++|+|| +.||++|....|.|.++.+++ .++.++.|+.|....                    ..++++.|++..
T Consensus        42 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~-~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~  120 (165)
T 1q98_A           42 ASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL-SNTIVLCISADLPFAQARFCGAEGIENAKTVSTFRNHALHSQLGVDI  120 (165)
T ss_dssp             TTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS-TTEEEEEEESSCHHHHTTCTTTTTCTTEEEEECTTCTHHHHHTTCEE
T ss_pred             CCCeEEEEEECCCCCCccHHHHHHHHHHHHHc-CCCEEEEEeCCCHHHHHHHHHHcCCCceEEeeccccchHHHHhCcee
Confidence            4789999999 899999999999999999998 668888888763111                    134777788753


Q ss_pred             ---------cceE-EEEeCCeEEEEEeC
Q 018973          311 ---------VPTF-LFIRDGQIRGRYVG  328 (348)
Q Consensus       311 ---------~PTl-~~~~~G~~v~~~~G  328 (348)
                               .|+. ++.++|+++..+.|
T Consensus       121 ~~~~~~g~~~p~~~liD~~G~i~~~~~~  148 (165)
T 1q98_A          121 QTGPLAGLTSRAVIVLDEQNNVLHSQLV  148 (165)
T ss_dssp             CSSTTTTSBCCEEEEECTTSBEEEEEEC
T ss_pred             cccccCCccceeEEEEcCCCEEEEEEeC
Confidence                     4965 55579999999976

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=98.51  E-value=1.6e-07  Score=79.21  Aligned_cols=57  Identities=16%  Similarity=0.096  Sum_probs=43.7

Q ss_pred             CCCEEEEEEeCCCCH-HHHhhhhHHHHHHHHcC----CcEEEEEeCCC---chhHHHHHHHcCcC
Q 018973          138 KNKLVVVEFAASRSL-DSSKIYPFMVDLSRQCN----DVEFILVMGDE---SEKTKELCEREKIK  194 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~-~C~~~~p~l~~la~~~~----~v~f~~vd~d~---~~~~~~l~~~~~V~  194 (348)
                      ++|++||+||++||+ +|....|.|.++.+++.    ++.++.|.+|.   .+..++.++++++.
T Consensus        27 ~Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~~~~~~~~~~   91 (170)
T 3me7_A           27 KGKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLEDIKRFQKEYGID   91 (170)
T ss_dssp             TTSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHHHHHHHHHHTTCC
T ss_pred             CCCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHHHHHHHHHHcCCC
Confidence            589999999999997 79999999999999883    48888888762   22334445555544

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=98.51  E-value=1.7e-07  Score=81.46  Aligned_cols=87  Identities=11%  Similarity=0.085  Sum_probs=63.8

Q ss_pred             CCcEEEEEEe-CCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhH--------------------HHHHHhCCCC-
Q 018973          252 DQKLIVLDVG-LKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSC--------------------MQFLRDMNVV-  309 (348)
Q Consensus       252 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~--------------------~~l~~~~~V~-  309 (348)
                      .+++++|+|| +.||++|....|.|.++.+++ .++.++.|+.|..+..                    .++++.|++. 
T Consensus        77 ~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~-~~v~vv~Is~D~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~ygv~~  155 (200)
T 3zrd_A           77 AGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL-ENTVVLCISSDLPFAQSRFCGAEGLSNVITLSTLRGADFKQAYGVAI  155 (200)
T ss_dssp             TTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS-TTEEEEEEESSCHHHHTTCTTTTTCTTEEEEETTSCTHHHHHTTCEE
T ss_pred             CCCcEEEEEECCCCCchhHHHHHHHHHHHHHh-CCCEEEEEECCCHHHHHHHHHHcCCCCceEEecCchHHHHHHhCcee
Confidence            4789999999 789999999999999999999 5699998887642221                    2466677765 


Q ss_pred             --------ccceE-EEEeCCeEEEEEeCC---ChHHHHHHHH
Q 018973          310 --------EVPTF-LFIRDGQIRGRYVGS---GKGELIGEIL  339 (348)
Q Consensus       310 --------~~PTl-~~~~~G~~v~~~~G~---~~~~L~~~l~  339 (348)
                              ..|+. ++.++|+++....+.   +..++.+.|+
T Consensus       156 ~~~~~~g~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~~~l~  197 (200)
T 3zrd_A          156 TEGPLAGLTARAVVVLDGQDNVIYSELVNEITTEPNYDAALA  197 (200)
T ss_dssp             CSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCHHHHHH
T ss_pred             ecccCCCccccEEEEECCCCeEEEEEecCCcccCCCHHHHHH
Confidence                    25965 555899999987654   3344444443

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=98.51  E-value=4.9e-07  Score=80.87  Aligned_cols=90  Identities=11%  Similarity=0.098  Sum_probs=69.3

Q ss_pred             CCcEEEEEEeC-CCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchhHH-------------------------HHHH
Q 018973          252 DQKLIVLDVGL-KHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDSCM-------------------------QFLR  304 (348)
Q Consensus       252 ~~k~vvV~F~a-~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~~~-------------------------~l~~  304 (348)
                      .+++++|+||+ +||++|....|.|.++.+++++ .+.++.|+.|......                         ++++
T Consensus        76 ~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~gv~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~v~~  155 (240)
T 3qpm_A           76 RGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAINTEVVACSVDSQFTHLAWIITPRKQGGLGPMKIPLLSDLTHQISK  155 (240)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTSHHHH
T ss_pred             CCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHhhcCCCCCceeEEeCchHHHHH
Confidence            47899999999 9999999999999999999863 4889989887543322                         3556


Q ss_pred             hCCCC------ccceE-EEEeCCeEEEEEeCC-----ChHHHHHHHHHH
Q 018973          305 DMNVV------EVPTF-LFIRDGQIRGRYVGS-----GKGELIGEILRY  341 (348)
Q Consensus       305 ~~~V~------~~PTl-~~~~~G~~v~~~~G~-----~~~~L~~~l~~~  341 (348)
                      .|++.      .+|++ ++.++|+++.++.+.     +.+++.+.|+.+
T Consensus       156 ~ygv~~~~~g~~~p~~flID~~G~I~~~~~~~~~~~~~~~eil~~l~~l  204 (240)
T 3qpm_A          156 DYGVYLEDQGHTLRGLFIIDEKGVLRQITMNDLPVGRSVDETLRLVQAF  204 (240)
T ss_dssp             HTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HhCCccccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            67776      57954 555899999887652     467777777765

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=98.51  E-value=2.2e-07  Score=78.19  Aligned_cols=61  Identities=16%  Similarity=0.132  Sum_probs=53.1

Q ss_pred             CCCEEEEEEe-CCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCe
Q 018973          138 KNKLVVVEFA-ASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPH  198 (348)
Q Consensus       138 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt  198 (348)
                      +++++||.|| ++||++|+...|.|.++.+++.++.++.|..|..+..++.++++++..+|.
T Consensus        46 ~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~  107 (171)
T 2yzh_A           46 KDVVQVIITVPSLDTPVCETETKKFNEIMAGMEGVDVTVVSMDLPFAQKRFCESFNIQNVTV  107 (171)
T ss_dssp             CSSEEEEEECSCTTSHHHHHHHHHHHHHTTTCTTEEEEEEESSCHHHHHHHHHHTTCCSSEE
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHcCCceEEEEeCCCHHHHHHHHHHcCCCCeEE
Confidence            5789999999 899999999999999999999779999999988666677888988864553

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=98.49  E-value=3.2e-07  Score=78.77  Aligned_cols=57  Identities=12%  Similarity=0.059  Sum_probs=44.9

Q ss_pred             CCC-EEEEEEeCCCCHHHHh-hhhHHHHHHHHcC--CcE-EEEEeCCCchhHHHHHHHcCcC
Q 018973          138 KNK-LVVVEFAASRSLDSSK-IYPFMVDLSRQCN--DVE-FILVMGDESEKTKELCEREKIK  194 (348)
Q Consensus       138 ~~k-~vvV~F~a~wC~~C~~-~~p~l~~la~~~~--~v~-f~~vd~d~~~~~~~l~~~~~V~  194 (348)
                      +++ .||+.||++||++|+. ..|.|.+++++|.  ++. ++.|+.|+....++.++++++.
T Consensus        55 ~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~f~~~~~~~  116 (184)
T 3uma_A           55 KGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILARGVDDIAVVAVNDLHVMGAWATHSGGM  116 (184)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHHTCT
T ss_pred             CCCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHHHHHhCCC
Confidence            456 4556667999999999 7999999999884  588 9999998765566667776665

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=98.49  E-value=2.1e-07  Score=69.73  Aligned_cols=60  Identities=7%  Similarity=0.122  Sum_probs=47.7

Q ss_pred             EEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHc-CcCCCCeEEEeecccccc
Q 018973          142 VVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCERE-KIKKVPHFSFYKSMEKIH  209 (348)
Q Consensus       142 vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~-~V~~~Pt~~~~~~g~~v~  209 (348)
                      -++.|+++||++|+++.+.|+++     ++.|..+|++ .+...++.+.+ ++..+|++.  .+|+.+.
T Consensus         7 ~v~~y~~~~C~~C~~~~~~L~~~-----~i~~~~vdv~-~~~~~~l~~~~~~~~~vP~l~--~~g~~i~   67 (89)
T 2klx_A            7 EIILYTRPNCPYCKRARDLLDKK-----GVKYTDIDAS-TSLRQEMVQRANGRNTFPQIF--IGDYHVG   67 (89)
T ss_dssp             CEEEESCSCCTTTHHHHHHHHHH-----TCCEEEECSC-HHHHHHHHHHHHSSCCSCEEE--ETTEECC
T ss_pred             eEEEEECCCChhHHHHHHHHHHc-----CCCcEEEECC-HHHHHHHHHHhCCCCCcCEEE--ECCEEEe
Confidence            36789999999999999999875     4677888888 33356788899 999999984  3776553

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=98.48  E-value=2.9e-07  Score=82.84  Aligned_cols=90  Identities=12%  Similarity=0.111  Sum_probs=69.8

Q ss_pred             Cc-EEEEEEeCCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchh------------------------HHHHHHhC
Q 018973          253 QK-LIVLDVGLKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDS------------------------CMQFLRDM  306 (348)
Q Consensus       253 ~k-~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~------------------------~~~l~~~~  306 (348)
                      ++ .++++||++||+.|....+.|.++.+++++ ++.++.|++|....                        ..++++.|
T Consensus        33 GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~gv~VI~VS~Ds~~~~~~w~~~~~~~~~~~i~fPil~D~~~~ia~~y  112 (249)
T 3a2v_A           33 GKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARRL  112 (249)
T ss_dssp             TCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHTCCCCCSCEEECTTSHHHHHH
T ss_pred             CCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHHHHHHHHHHHhcCCCCceeEEECCchHHHHHh
Confidence            45 456688999999999999999999998864 49999999875321                        12477888


Q ss_pred             CCC-------ccceE-EEEeCCeEEEEEeCC-----ChHHHHHHHHHHh
Q 018973          307 NVV-------EVPTF-LFIRDGQIRGRYVGS-----GKGELIGEILRYQ  342 (348)
Q Consensus       307 ~V~-------~~PTl-~~~~~G~~v~~~~G~-----~~~~L~~~l~~~~  342 (348)
                      ++.       .+|++ ++.++|+++....|.     +.++|.+.|+.+.
T Consensus       113 gv~~~~~g~~~~p~~fIID~dG~I~~~~~~~~~~gr~~~Ellr~I~alq  161 (249)
T 3a2v_A          113 GLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKALK  161 (249)
T ss_dssp             TCCCTTCSSSCCEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             CCccccCCCcccceEEEECCCCeEEEEEecCCcccchhHHHHHHHHHHH
Confidence            987       89965 555799999887654     5788888888764

>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}

Probab=98.48  E-value=1.4e-06  Score=69.73  Aligned_cols=96  Identities=16%  Similarity=0.086  Sum_probs=78.3

Q ss_pred             cceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCc
Q 018973          231 SAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVE  310 (348)
Q Consensus       231 ~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~  310 (348)
                      .....+.+.+++++++..    ++++||-|+.+||++|.   +.+.++++.+ +.+.|+.++.   ++   +++++++. 
T Consensus        21 ~~~~~i~s~~e~e~fi~~----~~v~VVGfF~~~~~~~~---~~F~~~A~~~-~d~~F~~t~~---~~---v~~~~~v~-   85 (124)
T 2l4c_A           21 QEPTWLTDVPAAMEFIAA----TEVAVIGFFQDLEIPAV---PILHSMVQKF-PGVSFGISTD---SE---VLTHYNIT-   85 (124)
T ss_dssp             CCCEECCSHHHHHHHHHT----SSEEEEEECSCTTSTHH---HHHHHHHHHC-TTSEEEEECC---HH---HHHHTTCC-
T ss_pred             CcceEcCCHHHHHHHHhc----CCCEEEEEECCCCChhH---HHHHHHHHhC-CCceEEEECh---HH---HHHHcCCC-
Confidence            345568889999999873    68899999999999994   4689999999 7799988864   44   99999998 


Q ss_pred             cceEEEEeCCe-EEEEEeC----C-ChHHHHHHHHHH
Q 018973          311 VPTFLFIRDGQ-IRGRYVG----S-GKGELIGEILRY  341 (348)
Q Consensus       311 ~PTl~~~~~G~-~v~~~~G----~-~~~~L~~~l~~~  341 (348)
                      .|++++|+++. ....+.|    . +.++|.+||...
T Consensus        86 ~~~vvlfkkfde~~~~~~g~~~~~~~~~~L~~FI~~n  122 (124)
T 2l4c_A           86 GNTICLFRLVDNEQLNLEDEDIESIDATKLSRFIEIN  122 (124)
T ss_dssp             SSCEEEEETTTTEEEEECHHHHTTCCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCceeecCcccCCCCHHHHHHHHHHh
Confidence            89999999753 4455676    5 999999999865

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=98.48  E-value=6.3e-08  Score=81.23  Aligned_cols=57  Identities=11%  Similarity=0.078  Sum_probs=46.8

Q ss_pred             CCCEEEEEEe-CCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcC
Q 018973          138 KNKLVVVEFA-ASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIK  194 (348)
Q Consensus       138 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~  194 (348)
                      +++++||+|| ++||++|+...|.|.++.+++.++.++.|..|..+..++.++++++.
T Consensus        42 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~   99 (165)
T 1q98_A           42 ASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLSNTIVLCISADLPFAQARFCGAEGIE   99 (165)
T ss_dssp             TTSEEEEEECSCSCSSCCCHHHHHHHHHHHHSTTEEEEEEESSCHHHHTTCTTTTTCT
T ss_pred             CCCeEEEEEECCCCCCccHHHHHHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHcCCC
Confidence            6789999999 89999999999999999999977999999998744434445555553

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.47  E-value=1.2e-07  Score=76.57  Aligned_cols=90  Identities=14%  Similarity=0.216  Sum_probs=60.5

Q ss_pred             ChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCc---hhH-HHHHHhCCCCccce
Q 018973          238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN---DSC-MQFLRDMNVVEVPT  313 (348)
Q Consensus       238 s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~---~~~-~~l~~~~~V~~~PT  313 (348)
                      ..+.+++.+..    ++  ++.|+++||++|+.+.+.|.++.      +.|..+|++..   ++. .++.+.+++.++|+
T Consensus        16 ~~~~~~~~i~~----~~--vvvf~~~~Cp~C~~~~~~L~~~~------i~~~~vdid~~~~~~~~~~~l~~~~g~~~vP~   83 (130)
T 2cq9_A           16 PVNQIQETISD----NC--VVIFSKTSCSYCTMAKKLFHDMN------VNYKVVELDLLEYGNQFQDALYKMTGERTVPR   83 (130)
T ss_dssp             HHHHHHHHHHH----SS--EEEEECSSCSHHHHHHHHHHHHT------CCCEEEETTTSTTHHHHHHHHHHHHSSCCSSE
T ss_pred             HHHHHHHHHcC----Cc--EEEEEcCCChHHHHHHHHHHHcC------CCcEEEECcCCcCcHHHHHHHHHHhCCCCcCE
Confidence            34556666653    23  34499999999999999888752      44566777765   322 24788899999999


Q ss_pred             EEEEeCCeEEEEEe---CC-ChHHHHHHHHHH
Q 018973          314 FLFIRDGQIRGRYV---GS-GKGELIGEILRY  341 (348)
Q Consensus       314 l~~~~~G~~v~~~~---G~-~~~~L~~~l~~~  341 (348)
                      ++  .+|+.+..+.   +. ...+|.++|++.
T Consensus        84 l~--i~G~~igg~~~l~~~~~~~~L~~~L~~~  113 (130)
T 2cq9_A           84 IF--VNGTFIGGATDTHRLHKEGKLLPLVHQC  113 (130)
T ss_dssp             EE--ETTEEEEEHHHHHHHHHHTSSHHHHHHH
T ss_pred             EE--ECCEEEcChHHHHHHHHcCcHHHHHHHc
Confidence            84  4888776432   22 344567666654

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=98.46  E-value=5e-07  Score=76.15  Aligned_cols=76  Identities=16%  Similarity=0.086  Sum_probs=56.9

Q ss_pred             CcEEEEEEe-CCCChhhhh-hhhHHHHHHHHhC-CcE-EEEEEECCCchhHHH--------------------HHHhCCC
Q 018973          253 QKLIVLDVG-LKHCGPCVK-VYPTVIKLSRQMA-GTV-VFARMNGDENDSCMQ--------------------FLRDMNV  308 (348)
Q Consensus       253 ~k~vvV~F~-a~wC~~C~~-~~p~l~~la~~~~-~~v-~~~~vd~~~~~~~~~--------------------l~~~~~V  308 (348)
                      +++++|+|| ++||++|.. ..|.|.++.++++ ..+ .++.|+.+.....++                    +++.|++
T Consensus        31 Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~gv  110 (167)
T 2wfc_A           31 GKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKGVDIIACMAVNDSFVMDAWGKAHGADDKVQMLADPGGAFTKAVDM  110 (167)
T ss_dssp             TSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTTSEEEECTTSHHHHHTTC
T ss_pred             CCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHhcCCCcceEEEECCCCcHHHHcCC
Confidence            567888876 999999999 9999999988884 348 889888775433333                    4455666


Q ss_pred             Ccc-----------ce-EEEEeCCeEEEEEeCC
Q 018973          309 VEV-----------PT-FLFIRDGQIRGRYVGS  329 (348)
Q Consensus       309 ~~~-----------PT-l~~~~~G~~v~~~~G~  329 (348)
                      ...           |+ +++ ++|+++....+.
T Consensus       111 ~~~~~~~~g~~~~~p~t~lI-~~G~I~~~~~~~  142 (167)
T 2wfc_A          111 ELDLSAVLGNVRSKRYSLVI-EDGVVTKVNVEP  142 (167)
T ss_dssp             EECCHHHHSSCEECCEEEEE-ETTEEEEEEECT
T ss_pred             ccccccccCcccceEEEEEE-eCCEEEEEEecC
Confidence            533           84 666 999999988775

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=98.46  E-value=3.1e-07  Score=76.93  Aligned_cols=87  Identities=10%  Similarity=0.042  Sum_probs=62.6

Q ss_pred             CCcEEEEEEe-CCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHh--------------------CCCCc
Q 018973          252 DQKLIVLDVG-LKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRD--------------------MNVVE  310 (348)
Q Consensus       252 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~--------------------~~V~~  310 (348)
                      .+++++|+|| +.||++|....|.|.++.++  .++.++.|+.|..+..++++++                    |++..
T Consensus        45 ~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~--~~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~  122 (166)
T 3p7x_A           45 AGKKKLISVVPSIDTGVCDQQTRKFNSDASK--EEGIVLTISADLPFAQKRWCASAGLDNVITLSDHRDLSFGENYGVVM  122 (166)
T ss_dssp             TTSCEEEEECSCTTSHHHHHHHHHHHHHSCT--TTSEEEEEESSCHHHHHHHHHHHTCSSCEEEECTTTCHHHHHHTCEE
T ss_pred             CCCcEEEEEECCCCCCccHHHHHHHHHHhhc--CCCEEEEEECCCHHHHHHHHHHcCCCceEEccCCchhHHHHHhCCcc
Confidence            4788999999 78999999999999998877  4588888887754444444444                    45543


Q ss_pred             ------cceE-EEEeCCeEEEEEeCC------ChHHHHHHHHH
Q 018973          311 ------VPTF-LFIRDGQIRGRYVGS------GKGELIGEILR  340 (348)
Q Consensus       311 ------~PTl-~~~~~G~~v~~~~G~------~~~~L~~~l~~  340 (348)
                            .|+. ++.++|+++.++.+.      +.+++.+.|++
T Consensus       123 ~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~il~~l~~  165 (166)
T 3p7x_A          123 EELRLLARAVFVLDADNKVVYKEIVSEGTDFPDFDAALAAYKN  165 (166)
T ss_dssp             TTTTEECCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHT
T ss_pred             ccCCceeeEEEEECCCCeEEEEEEcCCcccCCCHHHHHHHHhc
Confidence                  7964 555899999886543      34566666553

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=98.46  E-value=1.1e-06  Score=74.10  Aligned_cols=91  Identities=19%  Similarity=0.387  Sum_probs=64.2

Q ss_pred             CCcEEEEEEeCCCCh-hhhhhhhHHHHHHHHh---CCcEEEEEEECCCc----hhHHHHHHhCCC---------------
Q 018973          252 DQKLIVLDVGLKHCG-PCVKVYPTVIKLSRQM---AGTVVFARMNGDEN----DSCMQFLRDMNV---------------  308 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~-~C~~~~p~l~~la~~~---~~~v~~~~vd~~~~----~~~~~l~~~~~V---------------  308 (348)
                      .+|+++|+||.+||+ .|....+.+.++.+.+   +.++.++.|.+|-.    +..++++++|+.               
T Consensus        31 ~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~~Dtp~~l~~y~~~~~~~~~~~~~ltg~~~~~  110 (170)
T 4hde_A           31 KGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPDLDKPENLKAFIQKFTEDTSNWNLLTGYSLED  110 (170)
T ss_dssp             TTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTTCSCCTTEEEEBCSCHHH
T ss_pred             CCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecCcccccHHHHHHHHHHcCCCCCCceecCcccHHH
Confidence            489999999999997 7998888888877666   33588888877521    223344444432               


Q ss_pred             ---------------------Cccce-EEEEeCCeEEEEEeCC---ChHHHHHHHHHHh
Q 018973          309 ---------------------VEVPT-FLFIRDGQIRGRYVGS---GKGELIGEILRYQ  342 (348)
Q Consensus       309 ---------------------~~~PT-l~~~~~G~~v~~~~G~---~~~~L~~~l~~~~  342 (348)
                                           ...|+ +++.++|+++.++.|.   +.++|.+.|++++
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~g~~~~~~~~l~~~ik~Ll  169 (170)
T 4hde_A          111 ITKFSKDNFQSLVDKPENGQVIHGTSFYLIDQNGKVMKKYSGISNTPYEDIIRDMKRLA  169 (170)
T ss_dssp             HHHHHHHHHCCCCBCCTTSCCBCCCEEEEECTTSCEEEEEESSSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHhcccccccCCCCceEEeeeEEEEEcCCCeEEEEECCCCCCCHHHHHHHHHHHh
Confidence                                 12354 5666899999999885   4578888887764

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=98.46  E-value=4.6e-07  Score=76.41  Aligned_cols=60  Identities=18%  Similarity=0.050  Sum_probs=49.5

Q ss_pred             CCCEEEEEEe-CCCCHHHHh-hhhHHHHHHHHc--CCc-EEEEEeCCCchhHHHHHHHcCcC-CCC
Q 018973          138 KNKLVVVEFA-ASRSLDSSK-IYPFMVDLSRQC--NDV-EFILVMGDESEKTKELCEREKIK-KVP  197 (348)
Q Consensus       138 ~~k~vvV~F~-a~wC~~C~~-~~p~l~~la~~~--~~v-~f~~vd~d~~~~~~~l~~~~~V~-~~P  197 (348)
                      ++++|||.|| ++||++|+. ..|.|.++++++  .++ .++.|+.|+.+..++.++++++. .+|
T Consensus        30 ~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~~~~~~~~~~~fp   95 (167)
T 2wfc_A           30 AGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKGVDIIACMAVNDSFVMDAWGKAHGADDKVQ   95 (167)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTTSE
T ss_pred             CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHhcCCCcceE
Confidence            5778888886 999999999 999999999887  469 99999998766667788888775 355

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=98.46  E-value=3.7e-07  Score=70.78  Aligned_cols=72  Identities=19%  Similarity=0.170  Sum_probs=52.3

Q ss_pred             HHHHHHHHHhcCCCEEEEEEeC-----CCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhH-HHHHHHcCcCCCCeEE
Q 018973          127 IEEFDEALRLAKNKLVVVEFAA-----SRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKT-KELCEREKIKKVPHFS  200 (348)
Q Consensus       127 ~~~f~~~l~~~~~k~vvV~F~a-----~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~-~~l~~~~~V~~~Pt~~  200 (348)
                      .+.++++++  .+ .|+| |+.     +||++|+++.+.|+++     ++.|..+|++++++. .++.+.+|+..+|++ 
T Consensus         7 ~~~~~~~i~--~~-~vvv-f~~g~~~~~~C~~C~~~~~~L~~~-----~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v-   76 (105)
T 2yan_A            7 EERLKVLTN--KA-SVML-FMKGNKQEAKCGFSKQILEILNST-----GVEYETFDILEDEEVRQGLKAYSNWPTYPQL-   76 (105)
T ss_dssp             HHHHHHHHT--SS-SEEE-EESBCSSSBCTTHHHHHHHHHHHH-----TCCCEEEEGGGCHHHHHHHHHHHTCCSSCEE-
T ss_pred             HHHHHHHhc--cC-CEEE-EEecCCCCCCCccHHHHHHHHHHC-----CCCeEEEECCCCHHHHHHHHHHHCCCCCCeE-
Confidence            455666664  23 4555 676     9999999999999886     467888898875432 346777899999998 


Q ss_pred             Eeecccccc
Q 018973          201 FYKSMEKIH  209 (348)
Q Consensus       201 ~~~~g~~v~  209 (348)
                       |.+|+.+.
T Consensus        77 -~i~g~~ig   84 (105)
T 2yan_A           77 -YVKGELVG   84 (105)
T ss_dssp             -EETTEEEE
T ss_pred             -EECCEEEe
Confidence             34777654

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=98.45  E-value=2e-07  Score=82.32  Aligned_cols=54  Identities=9%  Similarity=-0.012  Sum_probs=46.7

Q ss_pred             CCCEEEEEEe-CCCCHHHHhhhhHHHHHHHHc--CCcEEEEEeCCCchhHHHHHHHc
Q 018973          138 KNKLVVVEFA-ASRSLDSSKIYPFMVDLSRQC--NDVEFILVMGDESEKTKELCERE  191 (348)
Q Consensus       138 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~--~~v~f~~vd~d~~~~~~~l~~~~  191 (348)
                      ++++|||+|| ++||++|+...|.|.+++++|  .++.++.|..|..+...+.++++
T Consensus        55 ~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~  111 (221)
T 2c0d_A           55 GQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLGISVDSVYSHLAWKNMP  111 (221)
T ss_dssp             TTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHSC
T ss_pred             CCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHh
Confidence            5789999999 999999999999999999988  46999999998755556666666

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=98.44  E-value=6.2e-07  Score=76.92  Aligned_cols=76  Identities=13%  Similarity=0.203  Sum_probs=55.0

Q ss_pred             Cc-EEEEEEeCCCChhhhh-hhhHHHHHHHHhCC-cEE-EEEEECCCchhHHH--------------------HHHhCCC
Q 018973          253 QK-LIVLDVGLKHCGPCVK-VYPTVIKLSRQMAG-TVV-FARMNGDENDSCMQ--------------------FLRDMNV  308 (348)
Q Consensus       253 ~k-~vvV~F~a~wC~~C~~-~~p~l~~la~~~~~-~v~-~~~vd~~~~~~~~~--------------------l~~~~~V  308 (348)
                      ++ .++++||++||++|+. ..|.|.++++++++ .+. ++.|+.+.....++                    ++++||+
T Consensus        56 Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~f~~~~~~~~~fp~l~D~~~~va~~yGv  135 (184)
T 3uma_A           56 GKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILARGVDDIAVVAVNDLHVMGAWATHSGGMGKIHFLSDWNAAFTKAIGM  135 (184)
T ss_dssp             TSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHHTCTTTSEEEECTTCHHHHHTTC
T ss_pred             CCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHHHHHhCCCCceEEEEcCchHHHHHcCC
Confidence            45 5566677999999999 69999999998853 377 88888875433333                    4455666


Q ss_pred             C-----------ccc-eEEEEeCCeEEEEEeCC
Q 018973          309 V-----------EVP-TFLFIRDGQIRGRYVGS  329 (348)
Q Consensus       309 ~-----------~~P-Tl~~~~~G~~v~~~~G~  329 (348)
                      .           ..| |+++ ++|+++....|.
T Consensus       136 ~~~~~~~g~g~~~~r~tfiI-ddG~I~~~~~~~  167 (184)
T 3uma_A          136 EIDLSAGTLGIRSKRYSMLV-EDGVVKALNIEE  167 (184)
T ss_dssp             EEEEGGGTCEEEECCEEEEE-ETTEEEEEEECS
T ss_pred             ceeccccCCcccceeEEEEE-CCCEEEEEEEeC
Confidence            4           246 4555 899999988775

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=98.44  E-value=2.7e-07  Score=77.34  Aligned_cols=61  Identities=8%  Similarity=0.054  Sum_probs=52.5

Q ss_pred             CCCEEEEEEe-CCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeE
Q 018973          138 KNKLVVVEFA-ASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHF  199 (348)
Q Consensus       138 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~  199 (348)
                      ++++++|.|| +.||++|+...|.|.+++++ .++.++.|..|..+...+.++++++..+|.+
T Consensus        45 ~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~-~~~~vv~is~d~~~~~~~~~~~~~~~~~~~l  106 (166)
T 3p7x_A           45 AGKKKLISVVPSIDTGVCDQQTRKFNSDASK-EEGIVLTISADLPFAQKRWCASAGLDNVITL  106 (166)
T ss_dssp             TTSCEEEEECSCTTSHHHHHHHHHHHHHSCT-TTSEEEEEESSCHHHHHHHHHHHTCSSCEEE
T ss_pred             CCCcEEEEEECCCCCCccHHHHHHHHHHhhc-CCCEEEEEECCCHHHHHHHHHHcCCCceEEc
Confidence            6789999999 78999999999999999888 7899999999987677788889888656644

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=98.43  E-value=4.9e-07  Score=75.55  Aligned_cols=58  Identities=14%  Similarity=0.084  Sum_probs=50.0

Q ss_pred             CCCEEEEEEe-CCCCHHHH-hhhhHHHHHHHHcC--CcE-EEEEeCCCchhHHHHHHHcCcCC
Q 018973          138 KNKLVVVEFA-ASRSLDSS-KIYPFMVDLSRQCN--DVE-FILVMGDESEKTKELCEREKIKK  195 (348)
Q Consensus       138 ~~k~vvV~F~-a~wC~~C~-~~~p~l~~la~~~~--~v~-f~~vd~d~~~~~~~l~~~~~V~~  195 (348)
                      ++++|||.|| ++||++|+ ...|.|.++++++.  ++. ++.|..|..+..++.++++++..
T Consensus        34 ~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~v~~vv~Is~d~~~~~~~~~~~~~~~~   96 (162)
T 1tp9_A           34 AGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVNDPFVMKAWAKSYPENK   96 (162)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHTCTTCS
T ss_pred             CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHhcCCCC
Confidence            6889999999 89999999 89999999998874  688 99999987666677888888753

>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}

Probab=98.42  E-value=1.4e-06  Score=69.74  Aligned_cols=79  Identities=10%  Similarity=0.200  Sum_probs=67.0

Q ss_pred             CCCCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCC
Q 018973          116 PRDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKK  195 (348)
Q Consensus       116 ~~~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~  195 (348)
                      .+...+..|.|.+++++.+.  .+.++||-|+++||++|   .+.+.++|+.+.++.|+.++.      ++++++|++. 
T Consensus        18 gP~~~~~~i~s~~e~e~fi~--~~~v~VVGfF~~~~~~~---~~~F~~~A~~~~d~~F~~t~~------~~v~~~~~v~-   85 (124)
T 2l4c_A           18 GAAQEPTWLTDVPAAMEFIA--ATEVAVIGFFQDLEIPA---VPILHSMVQKFPGVSFGISTD------SEVLTHYNIT-   85 (124)
T ss_dssp             CCSCCCEECCSHHHHHHHHH--TSSEEEEEECSCTTSTH---HHHHHHHHHHCTTSEEEEECC------HHHHHHTTCC-
T ss_pred             CCCCcceEcCCHHHHHHHHh--cCCCEEEEEECCCCChh---HHHHHHHHHhCCCceEEEECh------HHHHHHcCCC-
Confidence            34456677889999999997  68899999999999999   668899999997799998863      3489999999 


Q ss_pred             CCeEEEeeccc
Q 018973          196 VPHFSFYKSME  206 (348)
Q Consensus       196 ~Pt~~~~~~g~  206 (348)
                      .|++++|++++
T Consensus        86 ~~~vvlfkkfd   96 (124)
T 2l4c_A           86 GNTICLFRLVD   96 (124)
T ss_dssp             SSCEEEEETTT
T ss_pred             CCeEEEEEcCC
Confidence            89999999753

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=98.41  E-value=4.4e-07  Score=77.74  Aligned_cols=54  Identities=15%  Similarity=0.059  Sum_probs=46.7

Q ss_pred             CCCEEEEEEeC-CCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchhHHHHHHHc
Q 018973          138 KNKLVVVEFAA-SRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEKTKELCERE  191 (348)
Q Consensus       138 ~~k~vvV~F~a-~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~~~~l~~~~  191 (348)
                      ++++|||.||+ +||++|+...|.|.++.+++.  ++.++.|..|..+..++.++++
T Consensus        29 ~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~   85 (186)
T 1n8j_A           29 EGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSS   85 (186)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHHC
T ss_pred             CCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHc
Confidence            57899999995 999999999999999998875  5999999998765566777777

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=98.41  E-value=1.3e-06  Score=72.97  Aligned_cols=77  Identities=12%  Similarity=0.109  Sum_probs=57.6

Q ss_pred             CCcEEEEEEe-CCCChhhh-hhhhHHHHHHHHhC-CcEE-EEEEECCCchhHHH--------------------HHHhCC
Q 018973          252 DQKLIVLDVG-LKHCGPCV-KVYPTVIKLSRQMA-GTVV-FARMNGDENDSCMQ--------------------FLRDMN  307 (348)
Q Consensus       252 ~~k~vvV~F~-a~wC~~C~-~~~p~l~~la~~~~-~~v~-~~~vd~~~~~~~~~--------------------l~~~~~  307 (348)
                      .+++++|+|| ++||++|. ...|.|.++.++++ .++. ++.|+.+.....++                    +++.||
T Consensus        34 ~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~v~~vv~Is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g  113 (162)
T 1tp9_A           34 AGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVNDPFVMKAWAKSYPENKHVKFLADGSATYTHALG  113 (162)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHTCTTCSSEEEEECTTSHHHHHTT
T ss_pred             CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHhcCCCCCeEEEECCCchHHHHcC
Confidence            3689999999 89999999 89999999998885 3477 88887764333233                    555566


Q ss_pred             CC-----------ccce-EEEEeCCeEEEEEeCC
Q 018973          308 VV-----------EVPT-FLFIRDGQIRGRYVGS  329 (348)
Q Consensus       308 V~-----------~~PT-l~~~~~G~~v~~~~G~  329 (348)
                      +.           ..|+ +++. +|+++....|.
T Consensus       114 v~~~~~~~g~~~~~~p~~~vid-~G~i~~~~~~~  146 (162)
T 1tp9_A          114 LELDLQEKGLGTRSRRFALLVD-DLKVKAANIEG  146 (162)
T ss_dssp             CEEEETTTTSEEEECCEEEEEE-TTEEEEEEECS
T ss_pred             cccccccCCCCccceeEEEEEE-CCEEEEEEeeC
Confidence            65           2685 5555 99999888775

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=98.41  E-value=2.9e-07  Score=80.68  Aligned_cols=54  Identities=11%  Similarity=0.016  Sum_probs=45.8

Q ss_pred             CCCEEEEEEe-CCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchhHHHHHHHc
Q 018973          138 KNKLVVVEFA-ASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEKTKELCERE  191 (348)
Q Consensus       138 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~~~~l~~~~  191 (348)
                      ++++|||+|| ++||++|+...|.|.++.++|.  ++.++.|..|..+...+.++++
T Consensus        47 ~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~  103 (211)
T 2pn8_A           47 RGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTP  103 (211)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSC
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHh
Confidence            6789999999 9999999999999999999884  5999999998755445566555

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=98.40  E-value=6.2e-07  Score=70.34  Aligned_cols=73  Identities=18%  Similarity=0.190  Sum_probs=50.4

Q ss_pred             CHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCc----hhH-HHHHHHcCcCCCCeEE
Q 018973          126 SIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDES----EKT-KELCEREKIKKVPHFS  200 (348)
Q Consensus       126 s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~----~~~-~~l~~~~~V~~~Pt~~  200 (348)
                      ..+.++++++.  ++  |+.|+++||++|+++.+.|+++     ++.|..+|++..    ++. ..+.+.+|+..+|++ 
T Consensus         8 ~~~~~~~~i~~--~~--v~vy~~~~Cp~C~~~~~~L~~~-----~i~~~~~di~~~~~~~~~~~~~l~~~~g~~tvP~i-   77 (113)
T 3rhb_A            8 MEESIRKTVTE--NT--VVIYSKTWCSYCTEVKTLFKRL-----GVQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNV-   77 (113)
T ss_dssp             HHHHHHHHHHH--SS--EEEEECTTCHHHHHHHHHHHHT-----TCCCEEEEGGGSTTHHHHHHHHHHHHHSCCSSCEE-
T ss_pred             HHHHHHHHHhc--CC--EEEEECCCChhHHHHHHHHHHc-----CCCCeEEEeecCCCChHHHHHHHHHHhCCCCcCEE-
Confidence            35566666663  33  6679999999999999999875     344556666542    222 235566799999998 


Q ss_pred             Eeecccccc
Q 018973          201 FYKSMEKIH  209 (348)
Q Consensus       201 ~~~~g~~v~  209 (348)
                       |.+|+.+.
T Consensus        78 -fi~g~~ig   85 (113)
T 3rhb_A           78 -FVCGKHIG   85 (113)
T ss_dssp             -EETTEEEE
T ss_pred             -EECCEEEc
Confidence             45777654

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=98.40  E-value=3.3e-07  Score=82.04  Aligned_cols=45  Identities=13%  Similarity=0.085  Sum_probs=40.4

Q ss_pred             CCCEEEEEEeC-CCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCch
Q 018973          138 KNKLVVVEFAA-SRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESE  182 (348)
Q Consensus       138 ~~k~vvV~F~a-~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~  182 (348)
                      ++++|||+||+ +||++|+...|.|.+++++|.  ++.++.|.+|..+
T Consensus        76 ~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~gv~vv~Is~D~~~  123 (240)
T 3qpm_A           76 RGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAINTEVVACSVDSQF  123 (240)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHH
T ss_pred             CCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHH
Confidence            68999999999 999999999999999999985  5899999988643

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=98.38  E-value=1.8e-07  Score=77.26  Aligned_cols=89  Identities=13%  Similarity=0.217  Sum_probs=58.7

Q ss_pred             ChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCc---hhH-HHHHHhCCCCccce
Q 018973          238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN---DSC-MQFLRDMNVVEVPT  313 (348)
Q Consensus       238 s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~---~~~-~~l~~~~~V~~~PT  313 (348)
                      ..+.+++.+..    + .+ +.|+++||++|+.+.+.|.++.      +.|..+|++..   ++. .++.+.+++.++|+
T Consensus        38 ~~~~~~~~i~~----~-~V-vvf~~~~Cp~C~~~k~~L~~~~------i~~~~vdId~~~~~~~~~~~L~~~~g~~tvP~  105 (146)
T 2ht9_A           38 PVNQIQETISD----N-CV-VIFSKTSCSYCTMAKKLFHDMN------VNYKVVELDLLEYGNQFQDALYKMTGERTVPR  105 (146)
T ss_dssp             CHHHHHHHHHH----C-SE-EEEECTTCHHHHHHHHHHHHHT------CCCEEEEGGGCTTHHHHHHHHHHHHSCCCSCE
T ss_pred             HHHHHHHHhcC----C-CE-EEEECCCChhHHHHHHHHHHcC------CCeEEEECccCcCCHHHHHHHHHHhCCCCcCe
Confidence            44666766653    2 33 4499999999999999888763      34556666654   322 24788999999999


Q ss_pred             EEEEeCCeEEEEE---eCC-ChHHHHHHHHH
Q 018973          314 FLFIRDGQIRGRY---VGS-GKGELIGEILR  340 (348)
Q Consensus       314 l~~~~~G~~v~~~---~G~-~~~~L~~~l~~  340 (348)
                      ++  .+|+.++.+   .+. ...+|.++|.+
T Consensus       106 if--i~G~~igG~d~l~~l~~~g~L~~~L~~  134 (146)
T 2ht9_A          106 IF--VNGTFIGGATDTHRLHKEGKLLPLVHQ  134 (146)
T ss_dssp             EE--ETTEEEESHHHHHHHHHTTCHHHHHHH
T ss_pred             EE--ECCEEEeCchHHHHHHHcChHHHHHHH
Confidence            84  488876432   122 33456666664

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=98.38  E-value=4.7e-07  Score=76.60  Aligned_cols=58  Identities=16%  Similarity=0.146  Sum_probs=49.1

Q ss_pred             CEEEEEEeCCCCHHHHhh-hhHHHHHHHHcC--CcE-EEEEeCCCchhHHHHHHHcCcC-CCC
Q 018973          140 KLVVVEFAASRSLDSSKI-YPFMVDLSRQCN--DVE-FILVMGDESEKTKELCEREKIK-KVP  197 (348)
Q Consensus       140 k~vvV~F~a~wC~~C~~~-~p~l~~la~~~~--~v~-f~~vd~d~~~~~~~l~~~~~V~-~~P  197 (348)
                      +.||+.||++||++|+.. .|.|.++++++.  ++. ++.|+.|+.+..+..++++++. .+|
T Consensus        45 ~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~g~~~vv~Is~d~~~~~~~~~~~~~~~~~fp  107 (171)
T 2pwj_A           45 KVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKGVDSVICVAINDPYTVNAWAEKIQAKDAIE  107 (171)
T ss_dssp             EEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHTTCSEEEEEESSCHHHHHHHHHHTTCTTTSE
T ss_pred             CEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHHhCCCCceE
Confidence            577889999999999998 999999998874  588 9999998766677888898884 565

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=98.37  E-value=8.2e-07  Score=64.93  Aligned_cols=60  Identities=17%  Similarity=0.181  Sum_probs=46.4

Q ss_pred             EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCch-hHHHHHHHcCcCCCCeEEEeecccccc
Q 018973          143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESE-KTKELCEREKIKKVPHFSFYKSMEKIH  209 (348)
Q Consensus       143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~-~~~~l~~~~~V~~~Pt~~~~~~g~~v~  209 (348)
                      ++.|+++||++|+++.+.|+++     ++.|..+|+++.+ ...++.+.+++..+|++.  .+|+.+.
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~-----~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~l~--~~g~~i~   63 (82)
T 1fov_A            3 VEIYTKETCPYCHRAKALLSSK-----GVSFQELPIDGNAAKREEMIKRSGRTTVPQIF--IDAQHIG   63 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH-----TCCCEEEECTTCSHHHHHHHHHHSSCCSCEEE--ETTEEEE
T ss_pred             EEEEECCCChhHHHHHHHHHHC-----CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEEEe
Confidence            5679999999999999999875     4667778877643 234678889999999984  3776553

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=98.37  E-value=8.1e-07  Score=80.16  Aligned_cols=90  Identities=13%  Similarity=0.121  Sum_probs=68.3

Q ss_pred             CCcEEEEEEe-CCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchhHH-------------------------HHHH
Q 018973          252 DQKLIVLDVG-LKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDSCM-------------------------QFLR  304 (348)
Q Consensus       252 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~~~-------------------------~l~~  304 (348)
                      .+++++|+|| +.||++|....+.|.++.+++++ .+.++.|+.|......                         ++++
T Consensus        90 kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~gv~vv~IS~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~va~  169 (254)
T 3tjj_A           90 RGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISK  169 (254)
T ss_dssp             TTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTSCCSCSSCEEECTTSHHHH
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHHHHhcCCcccccceeeCcHHHHHH
Confidence            4789999999 99999999999999999999853 4889999887543322                         3555


Q ss_pred             hCCCC------ccce-EEEEeCCeEEEEEeCC-----ChHHHHHHHHHH
Q 018973          305 DMNVV------EVPT-FLFIRDGQIRGRYVGS-----GKGELIGEILRY  341 (348)
Q Consensus       305 ~~~V~------~~PT-l~~~~~G~~v~~~~G~-----~~~~L~~~l~~~  341 (348)
                      .|++.      .+|+ |++.++|+++..+.+.     +.+++.+.|+.+
T Consensus       170 ~ygv~~~~~g~~~p~tflID~~G~I~~~~~~~~~~~~~~~eil~~L~al  218 (254)
T 3tjj_A          170 DYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAF  218 (254)
T ss_dssp             HHTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             HcCCccccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHhh
Confidence            66764      4785 5555799999887652     467777777654

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=98.36  E-value=9.1e-07  Score=75.90  Aligned_cols=41  Identities=22%  Similarity=0.203  Sum_probs=36.4

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeC
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMG  178 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~  178 (348)
                      .++++|++|+..||++|+.+.|.+.++.+++++ +.|..+.+
T Consensus        24 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~   65 (192)
T 3h93_A           24 PGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPADVHFVRLPA   65 (192)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEEC
T ss_pred             CCCCEEEEEECCCChhHHHhhHHHHHHHHhCCCCeEEEEEeh
Confidence            478999999999999999999999999999986 77776654

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=98.35  E-value=1.6e-07  Score=79.00  Aligned_cols=56  Identities=18%  Similarity=0.140  Sum_probs=46.7

Q ss_pred             CCCEEEEEEe-CCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchhHHHHHHHcCc
Q 018973          138 KNKLVVVEFA-ASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEKTKELCEREKI  193 (348)
Q Consensus       138 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~~~~l~~~~~V  193 (348)
                      ++|+||+.|| ++||++|+...|.|.++.+++.  ++.++.|..|..+..+++++++++
T Consensus        32 ~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~   90 (164)
T 4gqc_A           32 RGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCLKKFKDENRL   90 (164)
T ss_dssp             TSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGSSSEEEEEESSCHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhccCceEEEecCCCHHHHHHHHHhcCc
Confidence            6888888888 9999999999999999998885  489999999876555666666665

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=98.35  E-value=1.8e-07  Score=81.22  Aligned_cols=61  Identities=11%  Similarity=0.087  Sum_probs=48.8

Q ss_pred             cCCCEEEEEEe-CCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCC
Q 018973          137 AKNKLVVVEFA-ASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVP  197 (348)
Q Consensus       137 ~~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~P  197 (348)
                      .++++|||.|| +.||++|+...|.|.+++++|.++.++.|..|..+..++.++++++..+|
T Consensus        76 ~~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~f~  137 (200)
T 3zrd_A           76 FAGKRKVLNIFPSIDTGVCAASVRKFNQLAGELENTVVLCISSDLPFAQSRFCGAEGLSNVI  137 (200)
T ss_dssp             GTTSEEEEEECSCCCCSCCCHHHHHHHHHHHTSTTEEEEEEESSCHHHHTTCTTTTTCTTEE
T ss_pred             hCCCcEEEEEECCCCCchhHHHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHcCCCCce
Confidence            36899999999 68999999999999999999977999999998754444455566554344

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=98.34  E-value=1.5e-06  Score=77.65  Aligned_cols=74  Identities=9%  Similarity=0.123  Sum_probs=55.4

Q ss_pred             CCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCC---------------------------------------
Q 018973          139 NKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGD---------------------------------------  179 (348)
Q Consensus       139 ~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d---------------------------------------  179 (348)
                      .+.+|+.|+.+||++|+++.+.++++.++ +++.|..+++-                                       
T Consensus        97 ak~~v~~F~D~~Cp~C~~~~~~l~~~~~~-g~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~l~~~~  175 (241)
T 1v58_A           97 APVIVYVFADPFCPYCKQFWQQARPWVDS-GKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLNVPA  175 (241)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHT-TSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCCCCS
T ss_pred             CCeEEEEEECCCChhHHHHHHHHHHHHhC-CcEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHHHhccCCCCccc
Confidence            57899999999999999999999998776 46776665541                                       


Q ss_pred             --------CchhHHHHHHHcCcCCCCeEEEee-ccccccccccC
Q 018973          180 --------ESEKTKELCEREKIKKVPHFSFYK-SMEKIHEEEGI  214 (348)
Q Consensus       180 --------~~~~~~~l~~~~~V~~~Pt~~~~~-~g~~v~~~~G~  214 (348)
                              ..++..++++++||+++||+++.. +|+. ..+.|.
T Consensus       176 ~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~G~~-~~~~G~  218 (241)
T 1v58_A          176 NVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTL-QQAVGL  218 (241)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEE-EEEESS
T ss_pred             cCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCE-EEecCC
Confidence                    001235678899999999999976 3543 445564

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=98.32  E-value=2.6e-06  Score=73.03  Aligned_cols=42  Identities=19%  Similarity=0.290  Sum_probs=37.3

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEEC
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNG  293 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~  293 (348)
                      +++++|+.||..||++|..+.+.+.++.+++++++.|..+.+
T Consensus        21 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~   62 (195)
T 2znm_A           21 SGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEHV   62 (195)
T ss_dssp             SSSEEEEEEECTTSCCTTSSCHHHHHHHHHSCTTEEEEEEEC
T ss_pred             CCCcEEEEEECCCChhHHHHhHHHHHHHHHCCCceEEEEecc
Confidence            468899999999999999999999999999877788877765

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=98.32  E-value=9.9e-07  Score=74.57  Aligned_cols=76  Identities=11%  Similarity=0.193  Sum_probs=56.0

Q ss_pred             CcEEEEEEeCCCChhhhhh-hhHHHHHHHHhCC-cEE-EEEEECCCchhHHHHHHh--------------------CCCC
Q 018973          253 QKLIVLDVGLKHCGPCVKV-YPTVIKLSRQMAG-TVV-FARMNGDENDSCMQFLRD--------------------MNVV  309 (348)
Q Consensus       253 ~k~vvV~F~a~wC~~C~~~-~p~l~~la~~~~~-~v~-~~~vd~~~~~~~~~l~~~--------------------~~V~  309 (348)
                      ++.++++||++||++|... .|.|.++.+++++ .+. ++.|+.+.....++++++                    ||+.
T Consensus        44 k~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~g~~~vv~Is~d~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ygv~  123 (171)
T 2pwj_A           44 KKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKGVDSVICVAINDPYTVNAWAEKIQAKDAIEFYGDFDGSFHKSLELT  123 (171)
T ss_dssp             SEEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHTTCSEEEEEESSCHHHHHHHHHHTTCTTTSEEEECTTCHHHHHHTCE
T ss_pred             CCEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHHhCCCCceEEEECCccHHHHHhCCc
Confidence            3577889999999999998 9999999888852 477 888888754444444444                    4443


Q ss_pred             c-----------cc-eEEEEeCCeEEEEEeCC
Q 018973          310 E-----------VP-TFLFIRDGQIRGRYVGS  329 (348)
Q Consensus       310 ~-----------~P-Tl~~~~~G~~v~~~~G~  329 (348)
                      .           .| |+++. +|+++..+.|.
T Consensus       124 ~~~~~~~~g~~~~~~t~~I~-~G~I~~~~~~~  154 (171)
T 2pwj_A          124 TDLSAGLLGIRSERWSAYVV-DGKVKALNVEE  154 (171)
T ss_dssp             EECTTTTCCEEECCEEEEEE-TTEEEEEEECS
T ss_pred             cccccccCCcccceeEEEEE-CCEEEEEEeec
Confidence            1           33 67776 99999988875

>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.32  E-value=6.6e-06  Score=70.06  Aligned_cols=101  Identities=12%  Similarity=0.148  Sum_probs=73.8

Q ss_pred             hHHHHhhhc----ccCCcEEEEEEeCCCChhhhhhhhHH---HHHHHHhCCcEEEEEEECCCchhH------------HH
Q 018973          241 DVEKLIDDH----KVDQKLIVLDVGLKHCGPCVKVYPTV---IKLSRQMAGTVVFARMNGDENDSC------------MQ  301 (348)
Q Consensus       241 ~~~~~l~~~----~~~~k~vvV~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~~~~~~~------------~~  301 (348)
                      .+++.++.+    +...|.++|+++++||..|..+...+   +++.+-+..++.+...|++..+.-            ..
T Consensus        39 s~~~Al~~A~~~~k~e~K~LlVyLhs~~~~~~~~f~~~~L~~~~V~~~l~~nfV~w~~dv~~~e~~~~~~~~~~~~~g~~  118 (178)
T 2ec4_A           39 SLEAAFQEAFYVKARDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQNFITWAWDLTKDSNRARFLTMCNRHFGSV  118 (178)
T ss_dssp             CHHHHHHTTTSSCTTTCCEEEEEEECSSCSHHHHHHHHTTTCHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHHHHTCHH
T ss_pred             CHHHHHHHHHhhhhhhCcEEEEEEeCCCCccHHHHHHHhcCCHHHHHHHHcCEEEEEEeCCCchhhhhhhhhhhhhhHHH
Confidence            355555555    55799999999999999999886433   444444444688999999876521            12


Q ss_pred             HH---HhCCCCccceEEEEe-C---CeEEEEEeCC-ChHHHHHHHHHH
Q 018973          302 FL---RDMNVVEVPTFLFIR-D---GQIRGRYVGS-GKGELIGEILRY  341 (348)
Q Consensus       302 l~---~~~~V~~~PTl~~~~-~---G~~v~~~~G~-~~~~L~~~l~~~  341 (348)
                      ++   +.|++.++|+++++. .   ++++.++.|. +.++|.+.|.+.
T Consensus       119 ~a~~~~~~~~~~~P~l~ii~~~~~~~~vl~~~~G~~~~~~ll~~L~~~  166 (178)
T 2ec4_A          119 VAQTIRTQKTDQFPLFLIIMGKRSSNEVLNVIQGNTTVDELMMRLMAA  166 (178)
T ss_dssp             HHHHHHHSCSTTCSEEEEECCCSSCCCEEEEECSCCCHHHHHHHHHHH
T ss_pred             HHHHHhhcCCCCCCeEEEEEcCCCceEEEEEEeCCCCHHHHHHHHHHH
Confidence            33   459999999998883 2   4788999999 999888887654

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=98.30  E-value=4.6e-07  Score=81.50  Aligned_cols=76  Identities=11%  Similarity=-0.037  Sum_probs=59.4

Q ss_pred             CCC-EEEEEEeCCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchh------------------------HHHHHHH
Q 018973          138 KNK-LVVVEFAASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEK------------------------TKELCER  190 (348)
Q Consensus       138 ~~k-~vvV~F~a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~------------------------~~~l~~~  190 (348)
                      +++ .||+.||++||++|....+.|.++++++.  ++.++.|++|....                        ..++++.
T Consensus        32 ~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~gv~VI~VS~Ds~~~~~~w~~~~~~~~~~~i~fPil~D~~~~ia~~  111 (249)
T 3a2v_A           32 QGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARR  111 (249)
T ss_dssp             TTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHTCCCCCSCEEECTTSHHHHH
T ss_pred             CCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHHHHHHHHHHHhcCCCCceeEEECCchHHHHH
Confidence            466 46678899999999999999999999885  69999999986321                        2357888


Q ss_pred             cCcC-------CCCeEEEe-ecccccccccc
Q 018973          191 EKIK-------KVPHFSFY-KSMEKIHEEEG  213 (348)
Q Consensus       191 ~~V~-------~~Pt~~~~-~~g~~v~~~~G  213 (348)
                      |||.       .+|+++++ ++|+.+....|
T Consensus       112 ygv~~~~~g~~~~p~~fIID~dG~I~~~~~~  142 (249)
T 3a2v_A          112 LGLLHAESATHTVRGVFIVDARGVIRTMLYY  142 (249)
T ss_dssp             HTCCCTTCSSSCCEEEEEECTTSBEEEEEEE
T ss_pred             hCCccccCCCcccceEEEECCCCeEEEEEec
Confidence            8987       88975555 67888776655

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=98.29  E-value=8.5e-07  Score=70.36  Aligned_cols=76  Identities=14%  Similarity=0.175  Sum_probs=52.7

Q ss_pred             ChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhh-hhHHHHHHHHhCCcEEEEEEECCCchh----HHHHHHhCCCCccc
Q 018973          238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKV-YPTVIKLSRQMAGTVVFARMNGDENDS----CMQFLRDMNVVEVP  312 (348)
Q Consensus       238 s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~-~p~l~~la~~~~~~v~~~~vd~~~~~~----~~~l~~~~~V~~~P  312 (348)
                      ..+.+++.+..    .+  ++.|+++||++|+++ .+.|.++..   +.+.|..+|+++.++    ..++.+.+++.++|
T Consensus        14 ~~~~~~~~i~~----~~--Vvvf~~~~Cp~C~~alk~~L~~~~~---~~i~~~~vdid~~~~~~~~~~~l~~~~g~~tvP   84 (118)
T 3c1r_A           14 TIKHVKDLIAE----NE--IFVASKTYCPYCHAALNTLFEKLKV---PRSKVLVLQLNDMKEGADIQAALYEINGQRTVP   84 (118)
T ss_dssp             HHHHHHHHHHH----SS--EEEEECSSCHHHHHHHHHHHTTSCC---CGGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSC
T ss_pred             HHHHHHHHHcc----Cc--EEEEEcCCCcCHHHHHHHHHHHcCC---CCCCeEEEECccCCChHHHHHHHHHHhCCCCcC
Confidence            34556666653    22  566999999999998 777765431   236677888876542    23588889999999


Q ss_pred             eEEEEeCCeEEE
Q 018973          313 TFLFIRDGQIRG  324 (348)
Q Consensus       313 Tl~~~~~G~~v~  324 (348)
                      ++  |.+|+.++
T Consensus        85 ~v--fi~g~~ig   94 (118)
T 3c1r_A           85 NI--YINGKHIG   94 (118)
T ss_dssp             EE--EETTEEEE
T ss_pred             EE--EECCEEEE
Confidence            87  45888764

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=98.29  E-value=1.2e-06  Score=65.70  Aligned_cols=61  Identities=11%  Similarity=0.189  Sum_probs=46.8

Q ss_pred             EEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchh-HHHHHHHcCcCCCCeEEEeecccccc
Q 018973          142 VVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEK-TKELCEREKIKKVPHFSFYKSMEKIH  209 (348)
Q Consensus       142 vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~-~~~l~~~~~V~~~Pt~~~~~~g~~v~  209 (348)
                      -++.|+++||++|+++.+.|++.     ++.|..+|+++.+. ..++.+.+++..+|++  +.+|+.+.
T Consensus         7 ~v~ly~~~~C~~C~~~~~~L~~~-----~i~~~~~di~~~~~~~~~l~~~~~~~~vP~l--~~~g~~i~   68 (92)
T 2khp_A            7 DVIIYTRPGCPYCARAKALLARK-----GAEFNEIDASATPELRAEMQERSGRNTFPQI--FIGSVHVG   68 (92)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHT-----TCCCEEEESTTSHHHHHHHHHHHTSSCCCEE--EETTEEEE
T ss_pred             cEEEEECCCChhHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEc
Confidence            36789999999999999998874     57788888887543 3457778999999975  34776543

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=98.28  E-value=4.7e-07  Score=78.57  Aligned_cols=43  Identities=9%  Similarity=0.032  Sum_probs=39.6

Q ss_pred             CCEEEEEEeCCCCHHHHhhhhHH---HHHHHHcCC-cEEEEEeCCCc
Q 018973          139 NKLVVVEFAASRSLDSSKIYPFM---VDLSRQCND-VEFILVMGDES  181 (348)
Q Consensus       139 ~k~vvV~F~a~wC~~C~~~~p~l---~~la~~~~~-v~f~~vd~d~~  181 (348)
                      ++++||+||+.||+||+.+.|.|   +++++++++ +.|.+++++..
T Consensus       113 ~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~~v~~~~~~v~~~  159 (197)
T 1un2_A          113 GAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNFM  159 (197)
T ss_dssp             TCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEECSSS
T ss_pred             CCCEEEEEECCCChhHHHhCcccccHHHHHHHCCCCCEEEEeccCcC
Confidence            57899999999999999999999   999999985 99999999863

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=98.26  E-value=3.7e-06  Score=71.26  Aligned_cols=86  Identities=14%  Similarity=0.117  Sum_probs=57.2

Q ss_pred             CcEEEE-EEeCCCChhhh-hhhhHHHHHHHHhCC-cEEEEE-EECCCchhHH--------------------HHHHhCCC
Q 018973          253 QKLIVL-DVGLKHCGPCV-KVYPTVIKLSRQMAG-TVVFAR-MNGDENDSCM--------------------QFLRDMNV  308 (348)
Q Consensus       253 ~k~vvV-~F~a~wC~~C~-~~~p~l~~la~~~~~-~v~~~~-vd~~~~~~~~--------------------~l~~~~~V  308 (348)
                      +++++| +||++||++|. ...|.|.++++++++ .+.++. +..|.....+                    ++++.||+
T Consensus        43 gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~gv~vv~~iS~D~~~~~~~f~~~~~~~~~fp~l~D~~~~va~~yGv  122 (173)
T 3mng_A           43 GKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDL  122 (173)
T ss_dssp             TSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHTTCTTTCEEEECTTCHHHHHHTC
T ss_pred             CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHhCCCCceEEEECCChHHHHHhCC
Confidence            565555 45599999999 588999999988853 366664 7766433222                    35556666


Q ss_pred             C-------------ccc-eEEEEeCCeEEEEEeCC-----ChHHHHHHHH
Q 018973          309 V-------------EVP-TFLFIRDGQIRGRYVGS-----GKGELIGEIL  339 (348)
Q Consensus       309 ~-------------~~P-Tl~~~~~G~~v~~~~G~-----~~~~L~~~l~  339 (348)
                      .             ..| ||++. +|+++....+.     +..+..+.|+
T Consensus       123 ~~~~~~~~~~g~~~~~r~tfvID-dG~I~~~~v~~~~~g~~~~~~~~vl~  171 (173)
T 3mng_A          123 LLDDSLVSIFGNRRLKRFSMVVQ-DGIVKALNVEPDGTGLTCSLAPNIIS  171 (173)
T ss_dssp             BCCSTTHHHHSSCCBCCEEEEEE-TTEEEEEEECTTSSCSSTTSHHHHHH
T ss_pred             CcccccccccCCcceEEEEEEEE-CCEEEEEEEeCCCCCcchHHHHHHHH
Confidence            4             348 56666 99999888764     3444554444

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=98.25  E-value=1.6e-06  Score=65.07  Aligned_cols=72  Identities=19%  Similarity=0.207  Sum_probs=52.7

Q ss_pred             EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCc--hh----HHHHHHhCCCCccceEEEEeCCeEEEEEeCCC
Q 018973          257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN--DS----CMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSG  330 (348)
Q Consensus       257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~--~~----~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~~  330 (348)
                      ++.|+++||++|+++...|.++.      +.|-.+|++..  .+    ..++.+.+++.++|++++  +|+.   +.|.+
T Consensus        14 v~ly~~~~Cp~C~~~~~~L~~~g------i~~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~--~g~~---i~G~~   82 (92)
T 3ic4_A           14 VLMYGLSTCPHCKRTLEFLKREG------VDFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVK--GDKH---VLGYN   82 (92)
T ss_dssp             SEEEECTTCHHHHHHHHHHHHHT------CCCEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEE--TTEE---EESCC
T ss_pred             EEEEECCCChHHHHHHHHHHHcC------CCcEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEE--CCEE---EeCCC
Confidence            56789999999999988887753      33445565521  11    245778899999999887  7754   45779


Q ss_pred             hHHHHHHHH
Q 018973          331 KGELIGEIL  339 (348)
Q Consensus       331 ~~~L~~~l~  339 (348)
                      +++|.++|.
T Consensus        83 ~~~l~~~l~   91 (92)
T 3ic4_A           83 EEKLKELIR   91 (92)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            999998875

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=98.24  E-value=2.1e-06  Score=65.85  Aligned_cols=64  Identities=13%  Similarity=0.157  Sum_probs=47.6

Q ss_pred             CCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHH-HHHHHc-CcCCCCeEEEeecccccc
Q 018973          139 NKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTK-ELCERE-KIKKVPHFSFYKSMEKIH  209 (348)
Q Consensus       139 ~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~-~l~~~~-~V~~~Pt~~~~~~g~~v~  209 (348)
                      +..-|+.|+++||++|+++.+.|+++     ++.|..+|+++.++.. ++.+.. |...+|++  |.+|+.+.
T Consensus        14 ~~~~v~vy~~~~Cp~C~~ak~~L~~~-----~i~y~~idI~~~~~~~~~l~~~~~g~~~vP~i--fi~g~~ig   79 (99)
T 3qmx_A           14 VSAKIEIYTWSTCPFCMRALALLKRK-----GVEFQEYCIDGDNEAREAMAARANGKRSLPQI--FIDDQHIG   79 (99)
T ss_dssp             CCCCEEEEECTTCHHHHHHHHHHHHH-----TCCCEEEECTTCHHHHHHHHHHTTTCCCSCEE--EETTEEEE
T ss_pred             CCCCEEEEEcCCChhHHHHHHHHHHC-----CCCCEEEEcCCCHHHHHHHHHHhCCCCCCCEE--EECCEEEe
Confidence            34557779999999999999999886     4667788888765433 344555 99999987  44776554

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=98.23  E-value=9.5e-06  Score=71.67  Aligned_cols=88  Identities=13%  Similarity=0.168  Sum_probs=65.4

Q ss_pred             EEEEEEeCCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchhHH----------------------------HHHHh
Q 018973          255 LIVLDVGLKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDSCM----------------------------QFLRD  305 (348)
Q Consensus       255 ~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~~~----------------------------~l~~~  305 (348)
                      .+++.||++||+.|....+.|.++.+++++ ++.++.|.+|......                            ++++.
T Consensus        34 vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~IS~D~~~~~~~~~~~i~~~~~~~~~~~~~fpil~D~~~~va~~  113 (224)
T 1prx_A           34 GILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAIL  113 (224)
T ss_dssp             EEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSCCCSCCSSCEEECTTCHHHHH
T ss_pred             EEEEEECCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhhCcccccCcCcceeecCchHHHHH
Confidence            566667899999999999999999999854 4889988887543221                            35556


Q ss_pred             CCCC------------ccceE-EEEeCCeEEEEEeCC-----ChHHHHHHHHHHh
Q 018973          306 MNVV------------EVPTF-LFIRDGQIRGRYVGS-----GKGELIGEILRYQ  342 (348)
Q Consensus       306 ~~V~------------~~PTl-~~~~~G~~v~~~~G~-----~~~~L~~~l~~~~  342 (348)
                      |++.            .+|++ ++.++|+++..+.|.     +.+++.+.|+.+.
T Consensus       114 ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~~~eil~~i~~l~  168 (224)
T 1prx_A          114 LGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISLQ  168 (224)
T ss_dssp             TTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHHHH
T ss_pred             hCCCCcccccCCCccccceEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            7763            36865 555799999988652     6788888887653

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=98.23  E-value=2.7e-06  Score=63.45  Aligned_cols=59  Identities=8%  Similarity=0.125  Sum_probs=45.1

Q ss_pred             EEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhC-CCCccceEEEEeCCeEE
Q 018973          256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDM-NVVEVPTFLFIRDGQIR  323 (348)
Q Consensus       256 vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~-~V~~~PTl~~~~~G~~v  323 (348)
                      .++.|+++||++|+.+.+.|.+.      .+.|..+|++ .+...++.+.+ ++.++|+++  .+|+.+
T Consensus         7 ~v~~y~~~~C~~C~~~~~~L~~~------~i~~~~vdv~-~~~~~~l~~~~~~~~~vP~l~--~~g~~i   66 (89)
T 2klx_A            7 EIILYTRPNCPYCKRARDLLDKK------GVKYTDIDAS-TSLRQEMVQRANGRNTFPQIF--IGDYHV   66 (89)
T ss_dssp             CEEEESCSCCTTTHHHHHHHHHH------TCCEEEECSC-HHHHHHHHHHHHSSCCSCEEE--ETTEEC
T ss_pred             eEEEEECCCChhHHHHHHHHHHc------CCCcEEEECC-HHHHHHHHHHhCCCCCcCEEE--ECCEEE
Confidence            36779999999999998888764      2567788888 33334588889 999999985  388754

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=98.22  E-value=9.5e-06  Score=68.28  Aligned_cols=83  Identities=20%  Similarity=0.203  Sum_probs=62.9

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHh--CCcEEEEEEECCCc------------------h--------------
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQM--AGTVVFARMNGDEN------------------D--------------  297 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~--~~~v~~~~vd~~~~------------------~--------------  297 (348)
                      +.+..|+.|+..+|++|+.+.+.+.++.+++  .+++.++..+..-.                  +              
T Consensus        26 ~a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lf~~~  105 (175)
T 1z6m_A           26 NAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLFDKEKESLQRGNVMHHYIDYSAPEQALSALHKMFATQ  105 (175)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEECCCCSTTTHHHHHHHTTCCTTCHHHHHHHHHHHHHTH
T ss_pred             CCCeEEEEEECCCCcchHHHHHHHHHHHHHHhhCCcEEEEEEeCCCCcccHHHHHHHHHHHHhcChHHHHHHHHHHHHcC
Confidence            4678899999999999999999999998888  67787777654210                  0              


Q ss_pred             -------------------------------hHHHHHHhCCCCccceEEEEeCCeEEEEEeCC-ChHHHHHHHH
Q 018973          298 -------------------------------SCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS-GKGELIGEIL  339 (348)
Q Consensus       298 -------------------------------~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~-~~~~L~~~l~  339 (348)
                                                     ...++++++||.++||+++  +|+.   +.|. +.+.|.+.|+
T Consensus       106 ~~~~~~~~~~l~~~a~~~~Gld~~~~~~~~~~~~~~a~~~gv~gtPt~vv--ng~~---~~G~~~~~~l~~~i~  174 (175)
T 1z6m_A          106 DEWGNLTLEEVATYAEKNLGLKEQKDATLVSAVIAEANAAHIQFVPTIII--GEYI---FDESVTEEELRGYIE  174 (175)
T ss_dssp             HHHTTSCHHHHHHHHHHTSCCCCCCCHHHHHHHHHHHHHHTCCSSCEEEE--TTEE---ECTTCCHHHHHHHHT
T ss_pred             hhhccCCHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCCCCcCeEEE--CCEE---ccCCCCHHHHHHHhc
Confidence                                           0123456689999999776  8874   4788 8888888764

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=98.21  E-value=5.1e-06  Score=73.90  Aligned_cols=89  Identities=13%  Similarity=0.076  Sum_probs=66.2

Q ss_pred             cEEEEEEe-CCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchhHH--------------------------HHHHh
Q 018973          254 KLIVLDVG-LKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDSCM--------------------------QFLRD  305 (348)
Q Consensus       254 k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~~~--------------------------~l~~~  305 (348)
                      +++||+|| ++||+.|....+.|.++.+++++ ++.++.|.+|.....+                          ++++.
T Consensus        30 ~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~~v~vigIS~D~~~~~~~~~~~i~~~~~~~~~~~fpil~D~~~~va~~  109 (233)
T 2v2g_A           30 SWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRGVKLIALSCDNVADHKEWSEDVKCLSGVKGDMPYPIIADETRELAVK  109 (233)
T ss_dssp             SEEEEEECSCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHHTCCSSCSSCEEECTTCHHHHH
T ss_pred             CeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHHHHhhCcccCCceEEEECChHHHHHH
Confidence            48999998 99999999999999999988853 4888888887543222                          24455


Q ss_pred             CCCC------------ccceE-EEEeCCeEEEEEeC-----CChHHHHHHHHHHh
Q 018973          306 MNVV------------EVPTF-LFIRDGQIRGRYVG-----SGKGELIGEILRYQ  342 (348)
Q Consensus       306 ~~V~------------~~PTl-~~~~~G~~v~~~~G-----~~~~~L~~~l~~~~  342 (348)
                      |++.            .+|++ ++.++|+++..+.+     .+.+++.+.|+.+.
T Consensus       110 ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~~~eilr~l~~Lq  164 (233)
T 2v2g_A          110 LGMVDPDERTSTGMPLTCRAVFIIGPDKKLKLSILYPATTGRNFSEILRVIDSLQ  164 (233)
T ss_dssp             TTCEEEEEECTTCCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             hCCcCcccccCCCcccccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            6664            46865 55579999988754     25788888887653

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=98.21  E-value=7.4e-06  Score=70.00  Aligned_cols=41  Identities=17%  Similarity=0.233  Sum_probs=36.3

Q ss_pred             CcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEEC
Q 018973          253 QKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNG  293 (348)
Q Consensus       253 ~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~  293 (348)
                      .+..|+.|+..+|++|..+.+.+.++.+++++++.|..+..
T Consensus        25 a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~   65 (193)
T 2rem_A           25 GKIEVVEIFGYTCPHCAHFDSKLQAWGARQAKDVRFTLVPA   65 (193)
T ss_dssp             TCEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTEEEEEEEC
T ss_pred             CCeEEEEEECCCChhHhhhhHHHHHHHHhcCCceEEEEeCc
Confidence            56789999999999999999999999999877788877765

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=98.21  E-value=6.2e-06  Score=63.70  Aligned_cols=71  Identities=15%  Similarity=0.234  Sum_probs=50.3

Q ss_pred             hhHHHHhhhcccCCcEEEEEEeC-----CCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHH-HHHHhCCCCccce
Q 018973          240 EDVEKLIDDHKVDQKLIVLDVGL-----KHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCM-QFLRDMNVVEVPT  313 (348)
Q Consensus       240 ~~~~~~l~~~~~~~k~vvV~F~a-----~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~-~l~~~~~V~~~PT  313 (348)
                      +.+++.+..    + .++| |+.     +||++|+++.+.|.++      .+.|..+|++++++.. ++.+.+++.++|+
T Consensus         8 ~~~~~~i~~----~-~vvv-f~~g~~~~~~C~~C~~~~~~L~~~------~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~   75 (105)
T 2yan_A            8 ERLKVLTNK----A-SVML-FMKGNKQEAKCGFSKQILEILNST------GVEYETFDILEDEEVRQGLKAYSNWPTYPQ   75 (105)
T ss_dssp             HHHHHHHTS----S-SEEE-EESBCSSSBCTTHHHHHHHHHHHH------TCCCEEEEGGGCHHHHHHHHHHHTCCSSCE
T ss_pred             HHHHHHhcc----C-CEEE-EEecCCCCCCCccHHHHHHHHHHC------CCCeEEEECCCCHHHHHHHHHHHCCCCCCe
Confidence            445555542    3 3444 666     9999999998888775      2668888998876533 3566789999999


Q ss_pred             EEEEeCCeEEE
Q 018973          314 FLFIRDGQIRG  324 (348)
Q Consensus       314 l~~~~~G~~v~  324 (348)
                      ++  .+|+.++
T Consensus        76 v~--i~g~~ig   84 (105)
T 2yan_A           76 LY--VKGELVG   84 (105)
T ss_dssp             EE--ETTEEEE
T ss_pred             EE--ECCEEEe
Confidence            84  5887654

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=98.20  E-value=2.6e-06  Score=72.27  Aligned_cols=60  Identities=20%  Similarity=0.150  Sum_probs=47.0

Q ss_pred             CCCEEEEE-EeCCCCHHHH-hhhhHHHHHHHHcC--CcEEEE-EeCCCchhHHHHHHHcCcC-CCC
Q 018973          138 KNKLVVVE-FAASRSLDSS-KIYPFMVDLSRQCN--DVEFIL-VMGDESEKTKELCEREKIK-KVP  197 (348)
Q Consensus       138 ~~k~vvV~-F~a~wC~~C~-~~~p~l~~la~~~~--~v~f~~-vd~d~~~~~~~l~~~~~V~-~~P  197 (348)
                      ++++|||. ||++||++|+ ...|.|.++++++.  ++.++. |..|.....++.++++++. .+|
T Consensus        42 ~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~gv~vv~~iS~D~~~~~~~f~~~~~~~~~fp  107 (173)
T 3mng_A           42 KGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVR  107 (173)
T ss_dssp             TTSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHTTCTTTCE
T ss_pred             CCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHhCCCCceE
Confidence            56755555 5599999999 58899999999874  488885 8888866677888888886 465

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=98.20  E-value=6.3e-06  Score=60.10  Aligned_cols=59  Identities=19%  Similarity=0.216  Sum_probs=45.1

Q ss_pred             EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchh-HHHHHHhCCCCccceEEEEeCCeEE
Q 018973          257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDS-CMQFLRDMNVVEVPTFLFIRDGQIR  323 (348)
Q Consensus       257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~-~~~l~~~~~V~~~PTl~~~~~G~~v  323 (348)
                      ++.|+++||++|+++.+.|.+.      .+.|..+|+++.++ ..++.+.+++.++|+++  .+|+.+
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~l~--~~g~~i   62 (82)
T 1fov_A            3 VEIYTKETCPYCHRAKALLSSK------GVSFQELPIDGNAAKREEMIKRSGRTTVPQIF--IDAQHI   62 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH------TCCCEEEECTTCSHHHHHHHHHHSSCCSCEEE--ETTEEE
T ss_pred             EEEEECCCChhHHHHHHHHHHC------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEEE
Confidence            5678999999999998888764      25677788876543 23477789999999984  488764

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=98.19  E-value=6.4e-06  Score=63.14  Aligned_cols=64  Identities=14%  Similarity=0.186  Sum_probs=47.7

Q ss_pred             CcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHH-HHHhC-CCCccceEEEEeCCeEEE
Q 018973          253 QKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQ-FLRDM-NVVEVPTFLFIRDGQIRG  324 (348)
Q Consensus       253 ~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~-l~~~~-~V~~~PTl~~~~~G~~v~  324 (348)
                      ...-++.|+++||++|+++...|.++      .+.|..+|+++.++.++ +.+.. +..++|+++  .+|+.++
T Consensus        14 ~~~~v~vy~~~~Cp~C~~ak~~L~~~------~i~y~~idI~~~~~~~~~l~~~~~g~~~vP~if--i~g~~ig   79 (99)
T 3qmx_A           14 VSAKIEIYTWSTCPFCMRALALLKRK------GVEFQEYCIDGDNEAREAMAARANGKRSLPQIF--IDDQHIG   79 (99)
T ss_dssp             CCCCEEEEECTTCHHHHHHHHHHHHH------TCCCEEEECTTCHHHHHHHHHHTTTCCCSCEEE--ETTEEEE
T ss_pred             CCCCEEEEEcCCChhHHHHHHHHHHC------CCCCEEEEcCCCHHHHHHHHHHhCCCCCCCEEE--ECCEEEe
Confidence            34456779999999999998888765      26678889988775433 44555 899999874  4887654

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=98.18  E-value=1.5e-05  Score=68.62  Aligned_cols=43  Identities=16%  Similarity=0.222  Sum_probs=39.2

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECC
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGD  294 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~  294 (348)
                      .++++||.|+..||++|+.+.|.+.++.+++++++.|..+++.
T Consensus        23 ~~~v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~p~~   65 (193)
T 3hz8_A           23 AGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLRTEHVV   65 (193)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHTTCCTTEEEEEEECC
T ss_pred             CCCcEEEEEECCCChhHHHHHHHHHHHHHHCCCCeEEEEecCC
Confidence            3688999999999999999999999999999888999888875

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A

Probab=98.15  E-value=6.3e-06  Score=72.59  Aligned_cols=88  Identities=8%  Similarity=0.157  Sum_probs=64.5

Q ss_pred             EEEEEEeCCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchhHH-------------------------HHHHhCCC
Q 018973          255 LIVLDVGLKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDSCM-------------------------QFLRDMNV  308 (348)
Q Consensus       255 ~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~~~-------------------------~l~~~~~V  308 (348)
                      .+++.||++||+.|....+.|.++.+++++ ++.++.|.+|.....+                         ++++.|++
T Consensus        34 vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~vS~D~~~~~~~~~~~i~~~~~~~~~~fpil~D~~~~va~~ygv  113 (220)
T 1xcc_A           34 AILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELANKLKI  113 (220)
T ss_dssp             EEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHHTCSCCCCCEEECTTSHHHHHHTC
T ss_pred             EEEEEECCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHHHHHhcCCCCcceeEECchhHHHHHhCC
Confidence            455556899999999999999999998854 4889999887543222                         24555676


Q ss_pred             C------------ccceE-EEEeCCeEEEEEeC-----CChHHHHHHHHHHh
Q 018973          309 V------------EVPTF-LFIRDGQIRGRYVG-----SGKGELIGEILRYQ  342 (348)
Q Consensus       309 ~------------~~PTl-~~~~~G~~v~~~~G-----~~~~~L~~~l~~~~  342 (348)
                      .            .+|++ ++.++|+++..+.|     .+.+++.+.|+.+.
T Consensus       114 ~~~~~~~~~g~~~~~p~~flID~~G~I~~~~~~~~~~g~~~~ell~~i~~lq  165 (220)
T 1xcc_A          114 MDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKSLQ  165 (220)
T ss_dssp             EEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             CCcccccCCCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            3            36865 55579999988753     36788888887753

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=98.14  E-value=2.1e-06  Score=64.38  Aligned_cols=58  Identities=16%  Similarity=0.207  Sum_probs=42.6

Q ss_pred             EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCC--chhH----HHHHHHcCcCCCCeEEEeecccc
Q 018973          143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE--SEKT----KELCEREKIKKVPHFSFYKSMEK  207 (348)
Q Consensus       143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~--~~~~----~~l~~~~~V~~~Pt~~~~~~g~~  207 (348)
                      ++.|+++||++|+++.+.|+++.     +.|-.+|++.  .++.    .++.+.+++..+|++++  +|+.
T Consensus        14 v~ly~~~~Cp~C~~~~~~L~~~g-----i~~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~--~g~~   77 (92)
T 3ic4_A           14 VLMYGLSTCPHCKRTLEFLKREG-----VDFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVK--GDKH   77 (92)
T ss_dssp             SEEEECTTCHHHHHHHHHHHHHT-----CCCEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEE--TTEE
T ss_pred             EEEEECCCChHHHHHHHHHHHcC-----CCcEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEE--CCEE
Confidence            66789999999999999998864     3334455542  2112    57788999999999877  6653

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=98.14  E-value=7.7e-06  Score=67.44  Aligned_cols=82  Identities=18%  Similarity=0.190  Sum_probs=62.1

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCC-----c------------------------------
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDE-----N------------------------------  296 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~-----~------------------------------  296 (348)
                      +.+.+|+.|+.++|++|+++.+.+.++     +++.++..+.--     .                              
T Consensus        13 ~a~~~vv~f~D~~Cp~C~~~~~~l~~l-----~~v~v~~~~~P~~~~~~~s~~~a~a~~ca~d~~~a~~~~~~~g~~~~~   87 (147)
T 3gv1_A           13 NGKLKVAVFSDPDCPFCKRLEHEFEKM-----TDVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDWMRKGKFPVG   87 (147)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHHHHTTC-----CSEEEEEEECCCTTTCTTHHHHHHHHHTSSSHHHHHHHHHHHCCCCTT
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHhhc-----CceEEEEEEccccccChhHHHHHHHHHcCCCHHHHHHHHHhCCCCCCc
Confidence            578899999999999999998887654     356666554211     0                              


Q ss_pred             --------hhHHHHHHhCCCCccceEEEEeCCeEEEEEeCC-ChHHHHHHHHHHh
Q 018973          297 --------DSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS-GKGELIGEILRYQ  342 (348)
Q Consensus       297 --------~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~  342 (348)
                              +...++++++||+++||+++ .+|+   .+.|. +.+.|.+.|++..
T Consensus        88 ~~~~~~~v~~~~~la~~~gI~gtPt~vi-~nG~---~i~G~~~~~~l~~~i~~~~  138 (147)
T 3gv1_A           88 GSICDNPVAETTSLGEQFGFNGTPTLVF-PNGR---TQSGYSPMPQLEEIIRKNQ  138 (147)
T ss_dssp             CCCCSCSHHHHHHHHHHTTCCSSCEEEC-TTSC---EEESCCCTTHHHHHHHHTS
T ss_pred             cHHHHHHHHHHHHHHHHhCCCccCEEEE-ECCE---EeeCCCCHHHHHHHHHHHH
Confidence                    01235777899999999998 7887   46798 9999999998764

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*

Probab=98.13  E-value=1.9e-06  Score=69.44  Aligned_cols=76  Identities=16%  Similarity=0.163  Sum_probs=53.1

Q ss_pred             CHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhh-hhHHHHHHHHcCCcEEEEEeCCCch----hHHHHHHHcCcCCCCeEE
Q 018973          126 SIEEFDEALRLAKNKLVVVEFAASRSLDSSKI-YPFMVDLSRQCNDVEFILVMGDESE----KTKELCEREKIKKVPHFS  200 (348)
Q Consensus       126 s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~-~p~l~~la~~~~~v~f~~vd~d~~~----~~~~l~~~~~V~~~Pt~~  200 (348)
                      +.+.+++++..  ++  |+.|+.+||++|+++ .+.|+++..+  ++.|..+|+|..+    ...++.+.+|++.+|++ 
T Consensus        26 ~~~~v~~~i~~--~~--Vvvy~~~~Cp~C~~a~k~~L~~~~~~--~i~~~~vdvd~~~~~~~~~~~L~~~~g~~tVP~v-   98 (129)
T 3ctg_A           26 TVAHVKDLIGQ--KE--VFVAAKTYCPYCKATLSTLFQELNVP--KSKALVLELDEMSNGSEIQDALEEISGQKTVPNV-   98 (129)
T ss_dssp             HHHHHHHHHHH--SS--EEEEECTTCHHHHHHHHHHHTTSCCC--GGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE-
T ss_pred             HHHHHHHHHcC--CC--EEEEECCCCCchHHHHHHHHHhcCcc--CCCcEEEEccccCCHHHHHHHHHHHhCCCCCCEE-
Confidence            46677777763  33  678899999999999 8888775422  2555566655432    13568889999999996 


Q ss_pred             Eeecccccc
Q 018973          201 FYKSMEKIH  209 (348)
Q Consensus       201 ~~~~g~~v~  209 (348)
                       |.+|+.+.
T Consensus        99 -fi~g~~ig  106 (129)
T 3ctg_A           99 -YINGKHIG  106 (129)
T ss_dssp             -EETTEEEE
T ss_pred             -EECCEEEc
Confidence             45776553

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0

Probab=98.12  E-value=4.1e-06  Score=65.87  Aligned_cols=73  Identities=19%  Similarity=0.257  Sum_probs=51.6

Q ss_pred             CHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCch---hH-HHHHHHcCcCCCCeEEE
Q 018973          126 SIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESE---KT-KELCEREKIKKVPHFSF  201 (348)
Q Consensus       126 s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~---~~-~~l~~~~~V~~~Pt~~~  201 (348)
                      +.+.++++++  .++  |+.|+.+||+.|+++.+.|+++     ++.|-.+|+|..+   +. ..+.+..|...+|++.+
T Consensus         6 ~~~~~~~~i~--~~~--v~vy~~~~Cp~C~~ak~~L~~~-----~i~~~~~dvd~~~~~~~~~~~l~~~~g~~tvP~vfi   76 (114)
T 3h8q_A            6 LRRHLVGLIE--RSR--VVIFSKSYCPHSTRVKELFSSL-----GVECNVLELDQVDDGARVQEVLSEITNQKTVPNIFV   76 (114)
T ss_dssp             HHHHHHHHHH--HCS--EEEEECTTCHHHHHHHHHHHHT-----TCCCEEEETTTSTTHHHHHHHHHHHHSCCSSCEEEE
T ss_pred             HHHHHHHHhc--cCC--EEEEEcCCCCcHHHHHHHHHHc-----CCCcEEEEecCCCChHHHHHHHHHHhCCCccCEEEE
Confidence            4567777776  344  3449999999999999999885     4556677776422   11 34667889999999865


Q ss_pred             eecccccc
Q 018973          202 YKSMEKIH  209 (348)
Q Consensus       202 ~~~g~~v~  209 (348)
                        +|+.+.
T Consensus        77 --~g~~ig   82 (114)
T 3h8q_A           77 --NKVHVG   82 (114)
T ss_dssp             --TTEEEE
T ss_pred             --CCEEEe
Confidence              776554

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=98.11  E-value=8.2e-06  Score=63.80  Aligned_cols=72  Identities=19%  Similarity=0.228  Sum_probs=48.3

Q ss_pred             hhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCc----hhHHH-HHHhCCCCccce
Q 018973          239 KEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN----DSCMQ-FLRDMNVVEVPT  313 (348)
Q Consensus       239 ~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~----~~~~~-l~~~~~V~~~PT  313 (348)
                      .+.+++.+..    ++  ++.|+++||++|+++.+.|.++      .+.|..+|++..    ++.++ +.+..|+..+|+
T Consensus         9 ~~~~~~~i~~----~~--v~vy~~~~Cp~C~~~~~~L~~~------~i~~~~~di~~~~~~~~~~~~~l~~~~g~~tvP~   76 (113)
T 3rhb_A            9 EESIRKTVTE----NT--VVIYSKTWCSYCTEVKTLFKRL------GVQPLVVELDQLGPQGPQLQKVLERLTGQHTVPN   76 (113)
T ss_dssp             HHHHHHHHHH----SS--EEEEECTTCHHHHHHHHHHHHT------TCCCEEEEGGGSTTHHHHHHHHHHHHHSCCSSCE
T ss_pred             HHHHHHHHhc----CC--EEEEECCCChhHHHHHHHHHHc------CCCCeEEEeecCCCChHHHHHHHHHHhCCCCcCE
Confidence            3445555553    23  6679999999999998888764      244556676652    33333 445569999999


Q ss_pred             EEEEeCCeEEE
Q 018973          314 FLFIRDGQIRG  324 (348)
Q Consensus       314 l~~~~~G~~v~  324 (348)
                      +  |.+|+.++
T Consensus        77 i--fi~g~~ig   85 (113)
T 3rhb_A           77 V--FVCGKHIG   85 (113)
T ss_dssp             E--EETTEEEE
T ss_pred             E--EECCEEEc
Confidence            8  45898765

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=98.10  E-value=8.7e-06  Score=62.64  Aligned_cols=74  Identities=24%  Similarity=0.241  Sum_probs=48.9

Q ss_pred             EEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCC--chhHHHH----HHhCCCCccceEEEEeCCeEEEEEeC
Q 018973          255 LIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDE--NDSCMQF----LRDMNVVEVPTFLFIRDGQIRGRYVG  328 (348)
Q Consensus       255 ~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~--~~~~~~l----~~~~~V~~~PTl~~~~~G~~v~~~~G  328 (348)
                      ..++.|+++||++|+++.+.|.++.      +.|-.+|++.  .++..++    .+..++.++|++++ .+|+.   +.|
T Consensus        22 ~~v~ly~~~~Cp~C~~ak~~L~~~~------i~y~~vdI~~~~~~~~~~~~~~l~~~~g~~~vP~l~i-~~~~~---igg   91 (103)
T 3nzn_A           22 GKVIMYGLSTCVWCKKTKKLLTDLG------VDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSFPTTII-NDEKA---IVG   91 (103)
T ss_dssp             SCEEEEECSSCHHHHHHHHHHHHHT------BCEEEEEGGGCCHHHHHHHHHHHHHHCTTCCSCEEEE-TTTEE---EES
T ss_pred             CeEEEEcCCCCchHHHHHHHHHHcC------CCcEEEEeeccCcccHHHHHHHHHHhCCCCccCEEEE-CCCEE---EEc
Confidence            3466799999999999988887752      3345556554  2221122    34468999999876 23343   346


Q ss_pred             CChHHHHHHH
Q 018973          329 SGKGELIGEI  338 (348)
Q Consensus       329 ~~~~~L~~~l  338 (348)
                      .+.++|.++|
T Consensus        92 ~~~~~l~~~L  101 (103)
T 3nzn_A           92 FKEKEIRESL  101 (103)
T ss_dssp             CCHHHHHHHT
T ss_pred             CCHHHHHHHh
Confidence            6888887765

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=98.08  E-value=6.2e-06  Score=69.50  Aligned_cols=57  Identities=21%  Similarity=0.253  Sum_probs=42.7

Q ss_pred             CCCEEEEEEeCCCCH-HHHhhhhHHHHHHHHc----CCcEEEEEeCCC----chhHHHHHHHcCcC
Q 018973          138 KNKLVVVEFAASRSL-DSSKIYPFMVDLSRQC----NDVEFILVMGDE----SEKTKELCEREKIK  194 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~-~C~~~~p~l~~la~~~----~~v~f~~vd~d~----~~~~~~l~~~~~V~  194 (348)
                      ++|+|||+||++||+ +|....+.|.++.+++    .++.++.|.+|.    .+..++.+++|++.
T Consensus        31 ~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~~Dtp~~l~~y~~~~~~~   96 (170)
T 4hde_A           31 KGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPDLDKPENLKAFIQKFTED   96 (170)
T ss_dssp             TTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTTCSC
T ss_pred             CCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecCcccccHHHHHHHHHHcCCC
Confidence            789999999999996 8999888888877654    248888887762    12334566666655

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=98.07  E-value=7.3e-06  Score=63.82  Aligned_cols=72  Identities=17%  Similarity=0.151  Sum_probs=52.2

Q ss_pred             HHHHHHHHHhcCCCEEEEEEeC-----CCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhH-HHHHHHcCcCCCCeEE
Q 018973          127 IEEFDEALRLAKNKLVVVEFAA-----SRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKT-KELCEREKIKKVPHFS  200 (348)
Q Consensus       127 ~~~f~~~l~~~~~k~vvV~F~a-----~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~-~~l~~~~~V~~~Pt~~  200 (348)
                      .+.+++++.  .++ |+| |+.     +||++|+++.+.|+++     ++.|..+|+++.++. .++.+.+|...+|++ 
T Consensus         5 ~~~~~~~i~--~~~-vvv-y~~g~~~~~~Cp~C~~ak~~L~~~-----~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~i-   74 (109)
T 1wik_A            5 SSGLKVLTN--KAS-VML-FMKGNKQEAKCGFSKQILEILNST-----GVEYETFDILEDEEVRQGLKTFSNWPTYPQL-   74 (109)
T ss_dssp             CCCHHHHHT--TSS-EEE-EESSTTTCCCSSTHHHHHHHHHHT-----CSCEEEEESSSCHHHHHHHHHHHSCCSSCEE-
T ss_pred             HHHHHHHhc--cCC-EEE-EEecCCCCCCCchHHHHHHHHHHc-----CCCeEEEECCCCHHHHHHHHHHhCCCCCCEE-
Confidence            455777775  334 444 566     9999999999999874     678899999875532 346677899999985 


Q ss_pred             Eeecccccc
Q 018973          201 FYKSMEKIH  209 (348)
Q Consensus       201 ~~~~g~~v~  209 (348)
                       |.+|+.+.
T Consensus        75 -fi~g~~ig   82 (109)
T 1wik_A           75 -YVRGDLVG   82 (109)
T ss_dssp             -ECSSSEEE
T ss_pred             -EECCEEEc
Confidence             45776554

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=98.06  E-value=4.5e-06  Score=61.84  Aligned_cols=78  Identities=14%  Similarity=0.075  Sum_probs=52.4

Q ss_pred             EEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch-hHHHHHHhCCC-----CccceEEEEeCCeEEEEEeC
Q 018973          255 LIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND-SCMQFLRDMNV-----VEVPTFLFIRDGQIRGRYVG  328 (348)
Q Consensus       255 ~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~-~~~~l~~~~~V-----~~~PTl~~~~~G~~v~~~~G  328 (348)
                      ..++.|+++||++|+++...|.+..    -.+.+..+|.++.+ ...++.+.++.     .++|++++  +|+.++   |
T Consensus         4 m~v~ly~~~~Cp~C~~~~~~L~~~~----i~~~~~~vd~~~~~~~~~el~~~~g~~~~~~~~vP~i~i--~g~~i~---g   74 (89)
T 3msz_A            4 MKVKIYTRNGCPYCVWAKQWFEENN----IAFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQIFI--DDEHIG---G   74 (89)
T ss_dssp             CCEEEEECTTCHHHHHHHHHHHHTT----CCCEEEECCSHHHHHHHHHHHHTTTCCSSCCCSSCEEEE--TTEEEE---S
T ss_pred             eEEEEEEcCCChhHHHHHHHHHHcC----CCceEEEeecCCChhHHHHHHHHhCCCCCCCCccCEEEE--CCEEEe---C
Confidence            3477899999999999887776532    22445555554432 22457888888     99999865  887654   4


Q ss_pred             CChHHHHHHHHHHhC
Q 018973          329 SGKGELIGEILRYQG  343 (348)
Q Consensus       329 ~~~~~L~~~l~~~~~  343 (348)
                        ..++.+++++.++
T Consensus        75 --~~~i~~~~~~~~~   87 (89)
T 3msz_A           75 --FTELKANADKILN   87 (89)
T ss_dssp             --HHHHHHTHHHHTT
T ss_pred             --hHHHHHHHHHHhc
Confidence              4566666666554

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=98.05  E-value=3.5e-05  Score=67.87  Aligned_cols=84  Identities=13%  Similarity=0.114  Sum_probs=68.2

Q ss_pred             CCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcC--
Q 018973          118 DERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIK--  194 (348)
Q Consensus       118 ~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~--  194 (348)
                      .+.|.++ |.+++.+.+.. +-..+++.|+.+||+.|+.+.+.|.++++++.+ +.|+.+|.++.+ ...+++.||+.  
T Consensus       112 ~plv~e~-t~~n~~~~~~~-~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~~k~~i~F~~vd~~~~~-~~~~l~~fgl~~~  188 (227)
T 4f9z_D          112 LHMVTEY-NPVTVIGLFNS-VIQIHLLLIMNKASPEYEENMHRYQKAAKLFQGKILFILVDSGMKE-NGKVISFFKLKES  188 (227)
T ss_dssp             CCSEEEC-CHHHHHHHHHS-SCCEEEEEEECTTSTTHHHHHHHHHHHHHHTTTTCEEEEEETTSGG-GHHHHHHTTCCGG
T ss_pred             CCceeec-CcccHHHHhcc-CCceEEEEEEcCCcchHHHHHHHHHHHHHHhhCCEEEEEeCCccHh-HHHHHHHcCCCcc
Confidence            3456666 89999988762 335566778889999999999999999999987 999999997532 44588999998  


Q ss_pred             CCCeEEEeec
Q 018973          195 KVPHFSFYKS  204 (348)
Q Consensus       195 ~~Pt~~~~~~  204 (348)
                      .+|++.++..
T Consensus       189 ~~P~~~i~~~  198 (227)
T 4f9z_D          189 QLPALAIYQT  198 (227)
T ss_dssp             GCSEEEEEES
T ss_pred             cCCEEEEEEC
Confidence            8999999874

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=98.05  E-value=1.6e-05  Score=59.48  Aligned_cols=61  Identities=10%  Similarity=0.134  Sum_probs=46.0

Q ss_pred             EEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchh-HHHHHHhCCCCccceEEEEeCCeEEE
Q 018973          256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDS-CMQFLRDMNVVEVPTFLFIRDGQIRG  324 (348)
Q Consensus       256 vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~-~~~l~~~~~V~~~PTl~~~~~G~~v~  324 (348)
                      .++.|+++||++|+++.+.|.+.      .+.|..+|+++++. ..++.+.+++.++|++  +.+|+.+.
T Consensus         7 ~v~ly~~~~C~~C~~~~~~L~~~------~i~~~~~di~~~~~~~~~l~~~~~~~~vP~l--~~~g~~i~   68 (92)
T 2khp_A            7 DVIIYTRPGCPYCARAKALLARK------GAEFNEIDASATPELRAEMQERSGRNTFPQI--FIGSVHVG   68 (92)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHT------TCCCEEEESTTSHHHHHHHHHHHTSSCCCEE--EETTEEEE
T ss_pred             cEEEEECCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEc
Confidence            36779999999999998877763      36678889887654 2347778899999975  44887543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	348
d2ifqa1	105	c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapien	7e-12
d2ifqa1	105	c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapien	8e-09
d1ep7a_	112	c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardt	1e-11
d1ep7a_	112	c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardt	2e-08
d1gh2a_	107	c.47.1.1 (A:) Thioredoxin-like protein, N-terminal	2e-11
d1gh2a_	107	c.47.1.1 (A:) Thioredoxin-like protein, N-terminal	2e-09
d1ti3a_	113	c.47.1.1 (A:) Thioredoxin {European aspen (Populus	3e-11
d1ti3a_	113	c.47.1.1 (A:) Thioredoxin {European aspen (Populus	2e-08
d1xfla_	114	c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsi	3e-10
d1xfla_	114	c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsi	3e-08
d1nw2a_	105	c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidoc	3e-09
d1qgva_	137	c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human	4e-09
d1qgva_	137	c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human	6e-09
d1xwaa_	111	c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila m	5e-09
d1xwaa_	111	c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila m	2e-08
d2trcp_	217	c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [	1e-08
d2trcp_	217	c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [	1e-06
d1woua_	119	c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxi	7e-08
d1woua_	119	c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxi	8e-08
d2es7a1	119	c.47.1.20 (A:7-125) Hydrogenase-1 operon protein H	9e-08
d2es7a1	119	c.47.1.20 (A:7-125) Hydrogenase-1 operon protein H	9e-08
d1syra_	103	c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plas	1e-07
d1syra_	103	c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plas	1e-07
d2hfda1	132	c.47.1.20 (A:1-132) Hydrogenase-1 operon protein H	1e-07
d2hfda1	132	c.47.1.20 (A:1-132) Hydrogenase-1 operon protein H	2e-05
d1r26a_	113	c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [Tax	2e-07
d1r26a_	113	c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [Tax	8e-06
d1f9ma_	112	c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia olera	4e-07
d1f9ma_	112	c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia olera	5e-06
d1zmaa1	115	c.47.1.1 (A:1-115) Bacterocin transport accessory	2e-06
d2trxa_	108	c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId	3e-06
d2trxa_	108	c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId	4e-04
d2b5ea4	119	c.47.1.2 (A:23-141) Protein disulfide isomerase, P	2e-05
d2b5ea4	119	c.47.1.2 (A:23-141) Protein disulfide isomerase, P	0.004
d1thxa_	108	c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120	5e-05
d1meka_	120	c.47.1.2 (A:) Protein disulfide isomerase, PDI {Hu	5e-05
d1meka_	120	c.47.1.2 (A:) Protein disulfide isomerase, PDI {Hu	9e-05
d2dlxa1	147	c.47.1.24 (A:1-147) UBX domain-containing protein	1e-04
d1z6na1	166	c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Ps	7e-04
d1g7ea_	122	c.47.1.7 (A:) Endoplasmic reticulum protein ERP29,	0.001
d2b5ea1	140	c.47.1.2 (A:365-504) Protein disulfide isomerase,	0.003
d2fwha1	117	c.47.1.1 (A:428-544) Thiol:disulfide interchange p	0.004

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (143), Expect = 7e-12
 Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 3/99 (3%)

Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180
           VK++ S   F EAL  A +KLVVV+F+A+       I PF   LS + ++V F+ V  D+
Sbjct: 2   VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61

Query: 181 SEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
               +++    ++K +P F F+K  +K+ E  G   ++L
Sbjct: 62  C---QDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKL 97

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (120), Expect = 8e-09
 Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 6/106 (5%)

Query: 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
           V Q+ SK   ++ +D      KL+V+D     CGPC  + P    LS + +  +      
Sbjct: 2   VKQIESKTAFQEALDAAG--DKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDV 59

Query: 293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEI 338
            D  D   +      V  +PTF F + GQ  G + G+ K +L   I
Sbjct: 60  DDCQDVASEC----EVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 112

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

 Score = 58.7 bits (141), Expect = 1e-11
 Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 3/111 (2%)

Query: 231 SAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFAR 290
            +V+ + SK   +  +   K + K IV+D     CGPC  + P    LS   AG V+F +
Sbjct: 2   GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLK 61

Query: 291 MNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRY 341
           ++    D+         +  +PTF   +DG      VG+ + +L   + ++
Sbjct: 62  VD---VDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLKALVAKH 109

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 112

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

 Score = 49.8 bits (118), Expect = 2e-08
 Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 4/102 (3%)

Query: 120 RVKKVHSIEEFDEALRLAK--NKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVM 177
            V  + S   +D  L   K  +K +VV+F A+       I P    LS        ++ +
Sbjct: 3   SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAG--KVIFL 60

Query: 178 GDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
             + +    + E   I  +P F  YK   K  +  G   D+L
Sbjct: 61  KVDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKL 102

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.8 bits (139), Expect = 2e-11
 Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 3/99 (3%)

Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180
           VK V S  +F   L  A ++L VV+F         +I P    +S +     F+ V   +
Sbjct: 3   VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQ 62

Query: 181 SEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
               +       I   P F F+++  +I + +G     L
Sbjct: 63  C---QGTAATNNISATPTFQFFRNKVRIDQYQGADAVGL 98

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (125), Expect = 2e-09
 Identities = 22/110 (20%), Positives = 42/110 (38%), Gaps = 6/110 (5%)

Query: 232 AVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARM 291
            V  + S  D +  +       +L V+   ++ CGPC+++ P             VF  +
Sbjct: 2   GVKPVGSDPDFQPELSGAG--SRLAVVKFTMRGCGPCLRIAPAFSS-MSNKYPQAVFLEV 58

Query: 292 NGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRY 341
           +  +           N+   PTF F R+     +Y G+    L  +I ++
Sbjct: 59  DVHQCQGTAA---TNNISATPTFQFFRNKVRIDQYQGADAVGLEEKIKQH 105

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]} Length = 113

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

 Score = 57.5 bits (138), Expect = 3e-11
 Identities = 26/111 (23%), Positives = 51/111 (45%), Gaps = 4/111 (3%)

Query: 231 SAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFAR 290
             V+  H+ +  ++  +  K  QKLIV+D     C PC  + P   +L+++         
Sbjct: 4   GQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKV 63

Query: 291 MNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRY 341
              +      +     NV  +PTF+F++DG++  + VG+ K  L   + ++
Sbjct: 64  DVDELKAVAEE----WNVEAMPTFIFLKDGKLVDKTVGADKDGLPTLVAKH 110

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]} Length = 113

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

 Score = 49.8 bits (118), Expect = 2e-08
 Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 5/104 (4%)

Query: 118 DERVKKVHSIEEFDEALRLAK--NKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFIL 175
           + +V   H+++ + E     K   KL+VV+F AS       I P   +L+++  +V F+ 
Sbjct: 3   EGQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLK 62

Query: 176 VMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
           V  DE    K + E   ++ +P F F K  + + +  G   D L
Sbjct: 63  VDVDEL---KAVAEEWNVEAMPTFIFLKDGKLVDKTVGADKDGL 103

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 114

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 55.2 bits (132), Expect = 3e-10
 Identities = 24/113 (21%), Positives = 49/113 (43%), Gaps = 4/113 (3%)

Query: 229 SHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVF 288
               V+  H+ E   + +      + L+V+D     CGPC  + P    L++++   +  
Sbjct: 4   EEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFL 63

Query: 289 ARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRY 341
                +             +  +PTF+F+++G+I  + VG+ K EL   I ++
Sbjct: 64  KVDTDELKSVASD----WAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKH 112

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 114

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 49.5 bits (117), Expect = 3e-08
 Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 5/107 (4%)

Query: 115 APRDERVKKVHSIEEFDEALRLAK--NKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVE 172
           A  + +V   H++E ++E L+ A     LVVV+F AS       I PF  DL+++  +V 
Sbjct: 2   ASEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVL 61

Query: 173 FILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
           F+ V  DE    K +     I+ +P F F K  + + +  G   D+L
Sbjct: 62  FLKVDTDEL---KSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDEL 105

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} Length = 105

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

 Score = 52.1 bits (124), Expect = 3e-09
 Identities = 23/108 (21%), Positives = 46/108 (42%), Gaps = 8/108 (7%)

Query: 232 AVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARM 291
           A + L +  + ++ I   K     +++D     CGPC  + P + + +   A  V  A++
Sbjct: 1   ATMTL-TDANFQQAIQGDK----PVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKL 55

Query: 292 NGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEIL 339
           N DEN           ++ +PT +  + G+   + +G    E +   L
Sbjct: 56  NVDENPETTS---QFGIMSIPTLILFKGGEPVKQLIGYQPKEQLEAQL 100

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (124), Expect = 4e-09
 Identities = 14/127 (11%), Positives = 51/127 (40%), Gaps = 14/127 (11%)

Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180
           +  +H+  + D+A+   ++++VV+ F         K+   +  ++ +  +   I ++  +
Sbjct: 4   LPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLV--D 61

Query: 181 SEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQLMGDVLYYGDSHSAVVQLHSKE 240
             +  +  +  ++       F+   + I  + G             G+++     +  K+
Sbjct: 62  ITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGT------------GNNNKINWAMEDKQ 109

Query: 241 DVEKLID 247
           ++  +I+
Sbjct: 110 EMVDIIE 116

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (123), Expect = 6e-09
 Identities = 15/111 (13%), Positives = 43/111 (38%), Gaps = 6/111 (5%)

Query: 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
           +  LH+   V++ I   +   +++V+  G      C+K+   +  ++ ++    V   ++
Sbjct: 4   LPHLHNGWQVDQAILSEE--DRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVD 61

Query: 293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSG-KGELIGEILRYQ 342
             E     +      + +  T +F    +     +G+G   ++   +   Q
Sbjct: 62  ITEVPDFNKM---YELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQ 109

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 111

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 51.4 bits (122), Expect = 5e-09
 Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 5/110 (4%)

Query: 229 SHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVF 288
           + + V Q+  K D++  +       KL+VLD     CGPC  + P +++LS Q A  VV 
Sbjct: 3   AAAMVYQVKDKADLDGQLTKAS--GKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVV 60

Query: 289 ARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEI 338
            +++ DE +         N+  +PTF+F+++G     + G+    L   I
Sbjct: 61  LKVDVDECEDIAME---YNISSMPTFVFLKNGVKVEEFAGANAKRLEDVI 107

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 111

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 49.5 bits (117), Expect = 2e-08
 Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 2/99 (2%)

Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180
           V +V    + D  L  A  KLVV++F A+       I P +V+LS Q  D   +L +  +
Sbjct: 7   VYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVD 66

Query: 181 SEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
               +++     I  +P F F K+  K+ E  G    +L
Sbjct: 67  EC--EDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRL 103

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 217

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.7 bits (126), Expect = 1e-08
 Identities = 23/155 (14%), Positives = 57/155 (36%), Gaps = 12/155 (7%)

Query: 180 ESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPD------QLMGDVLYYGDSHSAV 233
             +   +   +E++ +      Y+ + +  E+EG          Q M   L +G  +  V
Sbjct: 42  SPQSRDDKDSKERMSRKMSIQEYELIHQDKEDEGCLRKYRRQCMQDMHQKLSFGPRYGFV 101

Query: 234 VQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNG 293
            +L + E   + I+  +     IV+++       C  +    ++        V F ++  
Sbjct: 102 YELETGEQFLETIEKEQKV-TTIVVNIYEDGVRGCDALNS-SLECLAAEYPMVKFCKIRA 159

Query: 294 DENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVG 328
               +  +F    +   +PT L  + G++   ++ 
Sbjct: 160 SNTGAGDRF----SSDVLPTLLVYKGGELISNFIS 190

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 217

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.6 bits (110), Expect = 1e-06
 Identities = 26/164 (15%), Positives = 50/164 (30%), Gaps = 26/164 (15%)

Query: 89  QSLTKPKTSRTQLLITKATAAPGTKNAPRDERVKKVHSIEEFDEALRLA-KNKLVVVEFA 147
             L K +    Q +  K          PR   V ++ + E+F E +    K   +VV   
Sbjct: 75  GCLRKYRRQCMQDMHQKL------SFGPRYGFVYELETGEQFLETIEKEQKVTTIVVNIY 128

Query: 148 ASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEK 207
                    +   +  L+ +   V+F  +    +       +R     +P    YK  E 
Sbjct: 129 EDGVRGCDALNSSLECLAAEYPMVKFCKIRASNT----GAGDRFSSDVLPTLLVYKGGEL 184

Query: 208 IHEEEGIGPDQLMGDVLYYGDSHSAVVQLHSKEDVEKLIDDHKV 251
           I     I   +   +                  DVE  ++++ +
Sbjct: 185 ISNF--ISVAEQFAEDF-------------FAADVESFLNEYGL 213

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (114), Expect = 7e-08
 Identities = 20/109 (18%), Positives = 38/109 (34%), Gaps = 12/109 (11%)

Query: 123 KVHSIEEFDEALRLAKNKLVVVEFAASRSL-------DSSKIYPFMVDLSRQCND-VEFI 174
            V   EEF  A+     K +   F  S+         D  +  P + +  +  ++   FI
Sbjct: 5   SVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFI 64

Query: 175 LVMGDESE----KTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
                E         +  +  K+  VP    Y + +K+ E E +  + +
Sbjct: 65  YCQVGEKPYWKDPNNDFRKNLKVTAVPTLLKYGTPQKLVESECLQANLV 113

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (114), Expect = 8e-08
 Identities = 22/117 (18%), Positives = 38/117 (32%), Gaps = 14/117 (11%)

Query: 234 VQLHSKEDVEKLIDDHKVDQKLIVLD-------VGLKHCGPCVKVYPTVIKLSRQMAGTV 286
           V +   E+  + ++ H    K I           G   C  CV+  P V +  + ++   
Sbjct: 4   VSVSGFEEFHRAVEQHN--GKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGC 61

Query: 287 VFARMNGDEND----SCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEIL 339
           VF      E          F +++ V  VPT L     Q         +  L+  + 
Sbjct: 62  VFIYCQVGEKPYWKDPNNDFRKNLKVTAVPTLLKYGTPQKLVESECL-QANLVEMLF 117

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

 Score = 48.1 bits (114), Expect = 9e-08
 Identities = 19/107 (17%), Positives = 35/107 (32%), Gaps = 7/107 (6%)

Query: 234 VQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG-TVVFARMN 292
            Q      V+  I        +I+L    +           + +L R+        A  +
Sbjct: 13  WQPVEASTVDDWIKRVG--DGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVAD 70

Query: 293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS-GKGELIGEI 338
            ++++         NV   P  L   DG++RG   G     EL+  +
Sbjct: 71  LEQSE---AIGDRFNVRRFPATLVFTDGKLRGALSGIHPWAELLTLM 114

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

 Score = 48.1 bits (114), Expect = 9e-08
 Identities = 13/99 (13%), Positives = 43/99 (43%), Gaps = 2/99 (2%)

Query: 123 KVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESE 182
           +       D+ ++   + ++++     R+ + S     + +L R+    ++ + + D  E
Sbjct: 14  QPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVAD-LE 72

Query: 183 KTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGP-DQLM 220
           +++ + +R  +++ P    +   +      GI P  +L+
Sbjct: 73  QSEAIGDRFNVRRFPATLVFTDGKLRGALSGIHPWAELL 111

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 103

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 47.5 bits (112), Expect = 1e-07
 Identities = 21/109 (19%), Positives = 47/109 (43%), Gaps = 8/109 (7%)

Query: 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
           V  + S+ + + +I  ++    L+++D   + CGPC ++ P   + S+     V      
Sbjct: 2   VKIVTSQAEFDSIISQNE----LVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDV 57

Query: 293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRY 341
            + ++   +     N+  +PTF   ++G      +G+    L   I +Y
Sbjct: 58  DEVSEVTEKE----NITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKY 102

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 103

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 47.1 bits (111), Expect = 1e-07
 Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 5/99 (5%)

Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180
           VK V S  EFD  +  ++N+LV+V+F A       +I PF  + S+    + FI V  DE
Sbjct: 2   VKIVTSQAEFDSII--SQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDE 59

Query: 181 SEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
                E+ E+E I  +P F  YK+   +    G     L
Sbjct: 60  V---SEVTEKENITSMPTFKVYKNGSSVDTLLGANDSAL 95

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

 Score = 47.7 bits (113), Expect = 1e-07
 Identities = 17/91 (18%), Positives = 38/91 (41%), Gaps = 1/91 (1%)

Query: 126 SIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTK 185
           S    D+ L  A + +V++     R+ + S     + +L R+  D  + + + D  E+++
Sbjct: 23  SESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIAD-LEQSE 81

Query: 186 ELCEREKIKKVPHFSFYKSMEKIHEEEGIGP 216
            + +R  + + P    +          GI P
Sbjct: 82  AIGDRFGVFRFPATLVFTGGNYRGVLNGIHP 112

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

 Score = 41.2 bits (96), Expect = 2e-05
 Identities = 12/95 (12%), Positives = 24/95 (25%), Gaps = 4/95 (4%)

Query: 234 VQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNG 293
               S+  ++  +        +++L    K           + +L R+         +  
Sbjct: 19  WTPVSESRLDDWLTQAPD--GVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIAD 76

Query: 294 DENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVG 328
              +          V   P  L    G  RG   G
Sbjct: 77  L--EQSEAIGDRFGVFRFPATLVFTGGNYRGVLNG 109

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]} Length = 113

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

 Score = 46.8 bits (110), Expect = 2e-07
 Identities = 21/110 (19%), Positives = 47/110 (42%), Gaps = 8/110 (7%)

Query: 229 SHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVF 288
            + +VV ++S E    ++ +      L V       CGPC  +   + K++ +       
Sbjct: 6   RYPSVVDVYSVEQFRNIMSEDI----LTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFA 61

Query: 289 ARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEI 338
                + ++   +      V+++PTF+  R G++ G  +G+  G L  ++
Sbjct: 62  KVDADNNSEIVSKC----RVLQLPTFIIARSGKMLGHVIGANPGMLRQKL 107

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]} Length = 113

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

 Score = 42.1 bits (98), Expect = 8e-06
 Identities = 18/99 (18%), Positives = 40/99 (40%), Gaps = 5/99 (5%)

Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180
           V  V+S+E+F     ++++ L V  F A        I   M    +   +   +     +
Sbjct: 10  VVDVYSVEQFRNI--MSEDILTVAWFTAVWCGPCKTIERPME---KIAYEFPTVKFAKVD 64

Query: 181 SEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
           ++   E+  + ++ ++P F   +S + +    G  P  L
Sbjct: 65  ADNNSEIVSKCRVLQLPTFIIARSGKMLGHVIGANPGML 103

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]} Length = 112

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

 Score = 45.9 bits (108), Expect = 4e-07
 Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 2/93 (2%)

Query: 128 EEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKEL 187
           + F   ++ A +K VV++           + P    L+ +  DV F+ +  +  ++ K L
Sbjct: 14  DTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCN--QENKTL 71

Query: 188 CEREKIKKVPHFSFYKSMEKIHEEEGIGPDQLM 220
            +   I+ VP F   K    + E  G   D+L+
Sbjct: 72  AKELGIRVVPTFKILKENSVVGEVTGAKYDKLL 104

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]} Length = 112

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

 Score = 42.8 bits (100), Expect = 5e-06
 Identities = 23/106 (21%), Positives = 48/106 (45%), Gaps = 6/106 (5%)

Query: 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
           V ++ +K+    ++       K +VLD+  + CGPC  + P   KL+ +    +      
Sbjct: 8   VTEV-NKDTFWPIVKAAG--DKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDC 64

Query: 293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEI 338
             EN +  +   ++ +  VPTF  +++  + G   G+   +L+  I
Sbjct: 65  NQENKTLAK---ELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAI 107

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} Length = 115

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 44.1 bits (103), Expect = 2e-06
 Identities = 19/97 (19%), Positives = 36/97 (37%), Gaps = 5/97 (5%)

Query: 234 VQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNG 293
           +++ +    ++ +D  +         +G K C  C K   T+  +  +    + F     
Sbjct: 11  LEVTTVVRAQEALDKKET----ATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEE 66

Query: 294 DENDSCMQF-LRDMNVVEVPTFLFIRDGQIRGRYVGS 329
               + +Q       +  VP F+ I DGQI  R   S
Sbjct: 67  PSQLNDLQAFRSRYGIPTVPGFVHITDGQINVRCDSS 103

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

 Score = 43.6 bits (102), Expect = 3e-06
 Identities = 18/96 (18%), Positives = 43/96 (44%), Gaps = 7/96 (7%)

Query: 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
           ++ L + +  +  +         I++D   + CGPC  + P + +++ +  G +  A++N
Sbjct: 4   IIHL-TDDSFDTDVLKAD---GAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLN 59

Query: 293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVG 328
            D+            +  +PT L  ++G++    VG
Sbjct: 60  IDQ---NPGTAPKYGIRGIPTLLLFKNGEVAATKVG 92

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

 Score = 37.1 bits (85), Expect = 4e-04
 Identities = 14/86 (16%), Positives = 34/86 (39%), Gaps = 3/86 (3%)

Query: 128 EEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKEL 187
           + FD  + L  +  ++V+F A        I P + +++ +      + V     ++    
Sbjct: 10  DSFDTDV-LKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGT 66

Query: 188 CEREKIKKVPHFSFYKSMEKIHEEEG 213
             +  I+ +P    +K+ E    + G
Sbjct: 67  APKYGIRGIPTLLLFKNGEVAATKVG 92

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (96), Expect = 2e-05
 Identities = 21/102 (20%), Positives = 41/102 (40%), Gaps = 4/102 (3%)

Query: 115 APRDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFI 174
           AP D  V K+ + + F+E +    + LV+ EF A       K        + +    + I
Sbjct: 6   APEDSAVVKLAT-DSFNEYI--QSHDLVLAEFFAPWCGH-CKNMAPEYVKAAETLVEKNI 61

Query: 175 LVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGP 216
            +   +  + ++LC    I   P    +K+ +  +  +  GP
Sbjct: 62  TLAQIDCTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGP 103

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.9 bits (79), Expect = 0.004
 Identities = 18/121 (14%), Positives = 41/121 (33%), Gaps = 19/121 (15%)

Query: 210 EEEGIGPDQLMGDVLYYGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCV 269
           ++E + P+             SAVV+L + +   + I  H     L++ +     CG C 
Sbjct: 1   QQEAVAPED------------SAVVKL-ATDSFNEYIQSHD----LVLAEFFAPWCGHCK 43

Query: 270 KVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS 329
            + P  +K +  +        +   +         + N+   P+    ++  +       
Sbjct: 44  NMAPEYVKAAETL--VEKNITLAQIDCTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYE 101

Query: 330 G 330
           G
Sbjct: 102 G 102

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

 Score = 39.8 bits (92), Expect = 5e-05
 Identities = 14/98 (14%), Positives = 34/98 (34%), Gaps = 7/98 (7%)

Query: 231 SAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFAR 290
             V+ +   E   +++   +     +++      CGPC  + P +   +   +  +   +
Sbjct: 2   KGVITITDAEFESEVLKAEQ----PVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVK 57

Query: 291 MNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVG 328
           +  D        ++   V  VP    ++  QI     G
Sbjct: 58  LEIDP---NPTTVKKYKVEGVPALRLVKGEQILDSTEG 92

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 5e-05
 Identities = 20/104 (19%), Positives = 42/104 (40%), Gaps = 3/104 (2%)

Query: 114 NAPRDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDV-E 172
           +AP +E    V     F EAL  A +K ++VEF A        + P     + +      
Sbjct: 1   DAPEEEDHVLVLRKSNFAEAL--AAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGS 58

Query: 173 FILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGP 216
            I +   ++ +  +L ++  ++  P   F+++ +    +E    
Sbjct: 59  EIRLAKVDATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAG 102

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 9e-05
 Identities = 17/103 (16%), Positives = 35/103 (33%), Gaps = 5/103 (4%)

Query: 228 DSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVV 287
           +    V+ L  K +  + +  HK     ++++     CG C  + P   K + ++     
Sbjct: 4   EEEDHVLVL-RKSNFAEALAAHK----YLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGS 58

Query: 288 FARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSG 330
             R+   +        +   V   PT  F R+G        + 
Sbjct: 59  EIRLAKVDATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTA 101

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]} Length = 147

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 1e-04
 Identities = 10/110 (9%), Positives = 36/110 (32%), Gaps = 4/110 (3%)

Query: 236 LHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIK--LSRQMAGTVVFARMNG 293
           L  K   E   +  ++  K +++++       C  +   V      + +           
Sbjct: 25  LMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVY 84

Query: 294 DENDSCMQFLRDMNVVEVPTFLFI--RDGQIRGRYVGSGKGELIGEILRY 341
            +++   ++++   + + P    +  R GQ    +        + ++  +
Sbjct: 85  HDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLVEWHQLDVSSFLDQVTGF 134

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 37.6 bits (86), Expect = 7e-04
 Identities = 14/120 (11%), Positives = 34/120 (28%), Gaps = 1/120 (0%)

Query: 129 EFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKT-KEL 187
              E L+  + +  ++        D       +    R   ++E  ++    +E   ++ 
Sbjct: 44  ALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQPNIELAIISKGRAEDDLRQR 103

Query: 188 CEREKIKKVPHFSFYKSMEKIHEEEGIGPDQLMGDVLYYGDSHSAVVQLHSKEDVEKLID 247
              E+I         +    +          L G         +     H+  DV  +I+
Sbjct: 104 LALERIAIPLVLVLDEEFNLLGRFVERPQAVLDGGPQALAAYKAGDYLEHAIGDVLAIIE 163

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 122

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.5 bits (84), Expect = 0.001
 Identities = 15/104 (14%), Positives = 29/104 (27%), Gaps = 9/104 (8%)

Query: 231 SAVVQLHSKEDVEKLIDDHKVDQKLIVLDV---GLKHCGPCVKVYPTVIKLSRQMAGTVV 287
              + L +     K+I   K    L+  D      +      ++          +   V 
Sbjct: 4   KGALPLDT-VTFYKVIPKSKF--VLVKFDTQYPYGEKQDEFKRLAENSASSDDLLVAEVG 60

Query: 288 FARMNGDEN-DSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSG 330
            +      N +   ++   ++    P F   RDG        SG
Sbjct: 61  ISDYGDKLNMELSEKY--KLDKESYPVFYLFRDGDFENPVPYSG 102

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.6 bits (81), Expect = 0.003
 Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 6/103 (5%)

Query: 228 DSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVV 287
           +  S+V QL  K + +++++D K   K +++      CG C ++ PT  +L+   A    
Sbjct: 9   NQDSSVFQLVGK-NHDEIVNDPK---KDVLVLYYAPWCGHCKRLAPTYQELADTYANATS 64

Query: 288 FARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSG 330
              +     D     +R + +   PT +    G+     V  G
Sbjct: 65  DVLIAKL--DHTENDVRGVVIEGYPTIVLYPGGKKSESVVYQG 105

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]} Length = 117

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

 Score = 34.6 bits (78), Expect = 0.004
 Identities = 13/97 (13%), Positives = 37/97 (38%), Gaps = 4/97 (4%)

Query: 122 KKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQ----CNDVEFILVM 177
            ++ +++E ++AL  AK K V+++  A   +   +   +     +      + V     +
Sbjct: 5   TQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANV 64

Query: 178 GDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGI 214
                +   L +   +  +P   F+    + H +  +
Sbjct: 65  TANDAQDVALLKHLNVLGLPTILFFDGQGQEHPQARV 101

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	348
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	99.91
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	99.9
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	99.9
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	99.9
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	99.9
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.89
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	99.89
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	99.89
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.89
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	99.88
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.88
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	99.88
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	99.87
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	99.87
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.87
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	99.86
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	99.86
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	99.86
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.86
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	99.86
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	99.85
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	99.85
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.84
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.84
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	99.83
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.83
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	99.83
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	99.81
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	99.81
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	99.79
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	99.79
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	99.77
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	99.77
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	99.76
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	99.76
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	99.76
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	99.74
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	99.73
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	99.73
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	99.73
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	99.73
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	99.73
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	99.73
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	99.71
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	99.68
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.68
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	99.67
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	99.67
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	99.66
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	99.66
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	99.66
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	99.64
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	99.64
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	99.64
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	99.64
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	99.63
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	99.59
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	99.58
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	99.57
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.53
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	99.46
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	99.39
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	99.38
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	99.37
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	99.37
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	99.37
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	99.37
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	99.36
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	99.36
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	99.33
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	99.32
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	99.3
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	99.3
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	99.29
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	99.28
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	99.26
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	99.26
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	99.25
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	99.24
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	99.24
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	99.23
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	99.22
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	99.2
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	99.2
d1wjka_	100	Thioredoxin-like structure containing protein C330	99.18
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	99.18
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	99.16
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	99.12
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	99.11
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	99.08
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	99.06
d1wjka_	100	Thioredoxin-like structure containing protein C330	98.99
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	98.88
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	98.86
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	98.52
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	98.47
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	98.45
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	98.34
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	98.24
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	98.24
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	98.23
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	98.22
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	98.21
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	98.14
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	98.06
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	98.06
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	98.02
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	98.01
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	98.01
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	97.97
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	97.95
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	97.92
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	97.91
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	97.9
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	97.9
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	97.88
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	97.86
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	97.86
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	97.85
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	97.84
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	97.83
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	97.82
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	97.79
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	97.78
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	97.77
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	97.77
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	97.76
d2djka1	133	Protein disulfide isomerase, PDI {Fungi (Humicola	97.72
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	97.7
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	97.64
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	97.61
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	97.6
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	97.57
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	97.57
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	97.55
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	97.52
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	97.51
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	97.51
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	97.51
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	97.51
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	97.5
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	97.49
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	97.46
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	97.42
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	97.41
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	97.37
d2b5ea3	125	Protein disulfide isomerase, PDI {Baker's yeast (S	97.37
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	97.37
d1ttza_	75	Hypothetical protein XCC2852 {Xanthomonas campestr	97.35
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	97.26
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	97.24
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	97.22
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	97.2
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	97.2
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	97.19
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	97.19
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	97.11
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	97.1
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	97.09
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	97.06
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	97.06
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	97.02
d1a8ya2	102	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	96.99
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	96.95
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	96.87
d1bjxa_	110	Protein disulfide isomerase, PDI {Human (Homo sapi	96.85
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	96.79
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	96.67
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	96.64
d1ttza_	75	Hypothetical protein XCC2852 {Xanthomonas campestr	96.58
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	96.58
d2djka1	133	Protein disulfide isomerase, PDI {Fungi (Humicola	96.34
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	95.92
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	95.9
d1xcca_	219	1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax	95.86
d2b5ea3	125	Protein disulfide isomerase, PDI {Baker's yeast (S	95.79
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	95.75
d1bjxa_	110	Protein disulfide isomerase, PDI {Human (Homo sapi	95.67
d1xcca_	219	1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax	95.32
d1t1va_	93	SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}	93.8
d2axoa1	225	Hypothetical protein Atu2684 {Agrobacterium tumefa	93.23
d1a8ya2	102	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	93.21
d2axoa1	225	Hypothetical protein Atu2684 {Agrobacterium tumefa	93.01
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	92.8
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	91.89
d1hyua3	102	Alkyl hydroperoxide reductase subunit F (AhpF), N-	91.37
d1g7oa2	75	Glutaredoxin 2 {Escherichia coli [TaxId: 562]}	91.28
d1t1va_	93	SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}	89.81
d1abaa_	87	Glutaredoxin (Grx, thioltransferase) {Bacteriophag	88.98
d1hd2a_	161	Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606	87.61
d1hyua3	102	Alkyl hydroperoxide reductase subunit F (AhpF), N-	84.55
d1t4za_	105	Adaptive-response sensory-kinase SasA, N-terminal	83.76
d1tp9a1	162	Plant peroxiredoxin {Western balsam poplar(Populus	82.87
d1v2aa2	83	Class delta GST {Mosquito (Anopheles dirus b), iso	81.6

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=5.9e-25  Score=171.38  Aligned_cols=98  Identities=34%  Similarity=0.505  Sum_probs=91.0

Q ss_pred             CceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeE
Q 018973          120 RVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHF  199 (348)
Q Consensus       120 ~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~  199 (348)
                      .|.+|.|.++|++.+..+++++|||+|||+||+||+.+.|.|++++++++++.|++||+|+   .++++++|+|+++||+
T Consensus         1 mv~~i~s~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~vd~d~---~~~~~~~~~V~~~Pt~   77 (105)
T d2ifqa1           1 MVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD---CQDVASECEVKCMPTF   77 (105)
T ss_dssp             CCEEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTT---CHHHHHHTTCCBSSEE
T ss_pred             CeEEcCCHHHHHHHHHhCCCCEEEEEEEcCCccchhhhhhhhhhhccccccceeeeccccc---CHhHHHHcCceEEEEE
Confidence            3788999999999999888999999999999999999999999999999999999999999   5569999999999999


Q ss_pred             EEeeccccccccccCCCCccc
Q 018973          200 SFYKSMEKIHEEEGIGPDQLM  220 (348)
Q Consensus       200 ~~~~~g~~v~~~~G~~~~~l~  220 (348)
                      ++|++|+.++++.|.+++.|.
T Consensus        78 ~~~~~G~~v~~~~G~~~~~l~   98 (105)
T d2ifqa1          78 QFFKKGQKVGEFSGANKEKLE   98 (105)
T ss_dssp             EEEETTEEEEEEESCCHHHHH
T ss_pred             EEEECCEEEEEEeCCCHHHHH
Confidence            999999999999997665554

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=6.1e-25  Score=171.89  Aligned_cols=99  Identities=23%  Similarity=0.320  Sum_probs=91.8

Q ss_pred             CceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeE
Q 018973          120 RVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHF  199 (348)
Q Consensus       120 ~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~  199 (348)
                      .|..|.|.++|++.|.++++++++|+|||+||+||+.+.|.|++++++++++.|+++|+|+   .++++++|+|+++||+
T Consensus         2 ~v~~i~s~~~f~~~l~~~~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~~~~f~~vd~d~---~~~l~~~~~v~~~Pt~   78 (107)
T d1gh2a_           2 GVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQ---CQGTAATNNISATPTF   78 (107)
T ss_dssp             CEEEECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCTTSEEEEEETTT---SHHHHHHTTCCSSSEE
T ss_pred             ceEEcCCHHHHHHHHHhCCCCEEEEEEECCCCCCccccchhhhcccccccccccccccccc---chhhhhhcCceeceEE
Confidence            4788999999999999888999999999999999999999999999999999999999999   5569999999999999


Q ss_pred             EEeeccccccccccCCCCcccc
Q 018973          200 SFYKSMEKIHEEEGIGPDQLMG  221 (348)
Q Consensus       200 ~~~~~g~~v~~~~G~~~~~l~~  221 (348)
                      ++|++|+.++++.|.+.+.|..
T Consensus        79 ~~~~~G~~v~~~~G~~~~~l~~  100 (107)
T d1gh2a_          79 QFFRNKVRIDQYQGADAVGLEE  100 (107)
T ss_dssp             EEEETTEEEEEEESSCHHHHHH
T ss_pred             EEEECCEEEEEEeCCCHHHHHH
Confidence            9999999999999987666553

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.90  E-value=5.7e-24  Score=167.93  Aligned_cols=99  Identities=23%  Similarity=0.296  Sum_probs=91.0

Q ss_pred             CCCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCC
Q 018973          117 RDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKV  196 (348)
Q Consensus       117 ~~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~  196 (348)
                      ..+.++++.|.++|+++++  .+++|+|+|||+||+||+.+.|.|++++++++++.|++||+|+   .++++++|||+++
T Consensus         6 ~~p~vi~i~s~~~~~~~~~--~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~---~~~l~~~~~V~~~   80 (113)
T d1r26a_           6 RYPSVVDVYSVEQFRNIMS--EDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADN---NSEIVSKCRVLQL   80 (113)
T ss_dssp             CCSCCEEECCHHHHHHHHH--SSSCEEEEEECTTCHHHHHTHHHHHHHHHHCTTSEEEEEETTT---CHHHHHHTTCCSS
T ss_pred             CCCceEEeCCHHHHHHHHc--CCCeEEEEEECCCCccchhhceecccccccccccccccccccc---chhhHHHccccCC
Confidence            3456999999999999997  6899999999999999999999999999999999999999999   5569999999999


Q ss_pred             CeEEEeeccccccccccCCCCccc
Q 018973          197 PHFSFYKSMEKIHEEEGIGPDQLM  220 (348)
Q Consensus       197 Pt~~~~~~g~~v~~~~G~~~~~l~  220 (348)
                      ||+++|++|+.+.++.|.+++.+.
T Consensus        81 Pt~~~~~~G~~v~~~~G~~~~~l~  104 (113)
T d1r26a_          81 PTFIIARSGKMLGHVIGANPGMLR  104 (113)
T ss_dssp             SEEEEEETTEEEEEEESSCHHHHH
T ss_pred             CEEEEEECCEEEEEEeCCCHHHHH
Confidence            999999999999999997665544

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=99.90  E-value=3.6e-24  Score=169.11  Aligned_cols=102  Identities=26%  Similarity=0.442  Sum_probs=92.8

Q ss_pred             CCCCceEecCHHHHHHHHHhc--CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcC
Q 018973          117 RDERVKKVHSIEEFDEALRLA--KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIK  194 (348)
Q Consensus       117 ~~~~v~~v~s~~~f~~~l~~~--~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~  194 (348)
                      ..+.|+.++|.++|++.+.++  .+++|||+|||+||+||+.+.|.|++++++++++.|++||+|+   .++++++|+|+
T Consensus         2 ~~g~vi~i~s~e~~~~~l~~~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~d~---~~~l~~~~~I~   78 (113)
T d1ti3a_           2 EEGQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDE---LKAVAEEWNVE   78 (113)
T ss_dssp             CCCCEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCSSEEEEEEETTT---CHHHHHHHHCS
T ss_pred             CCCcEEEEeCHHHHHHHHHHHHcCCCEEEEEEEcCccccchhhhhhhhhhhccCCCceEEeeeeec---cccccccCeec
Confidence            356899999999999998874  4799999999999999999999999999999999999999999   55699999999


Q ss_pred             CCCeEEEeeccccccccccCCCCcccc
Q 018973          195 KVPHFSFYKSMEKIHEEEGIGPDQLMG  221 (348)
Q Consensus       195 ~~Pt~~~~~~g~~v~~~~G~~~~~l~~  221 (348)
                      ++||+++|++|+.++++.|.+.+.|..
T Consensus        79 ~~Pt~~~~k~G~~v~~~~G~~~~~l~~  105 (113)
T d1ti3a_          79 AMPTFIFLKDGKLVDKTVGADKDGLPT  105 (113)
T ss_dssp             STTEEEEEETTEEEEEEECCCTTHHHH
T ss_pred             ccceEEEEECCEEEEEEcCCCHHHHHH
Confidence            999999999999999999977666554

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.90  E-value=4.6e-24  Score=167.92  Aligned_cols=101  Identities=31%  Similarity=0.381  Sum_probs=92.1

Q ss_pred             CCCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCC
Q 018973          117 RDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKK  195 (348)
Q Consensus       117 ~~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~  195 (348)
                      ..+.+.+|.+.++|+..|.++++++|||+|||+||+||+.+.|.|++++++|++ +.++.||+|+   .++++++|+|++
T Consensus         3 ~~~~v~~i~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~i~~d~---~~~l~~~~~V~~   79 (111)
T d1xwaa_           3 AAAMVYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDE---CEDIAMEYNISS   79 (111)
T ss_dssp             CSCCEEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTT---CHHHHHHTTCCS
T ss_pred             CCCeEEEECCHHHHHHHHHhcCCCEEEEEEECCcccCccccchhHHHHhhhcccceEEEEEEeec---CcchhhcCCCcc
Confidence            446789999999999999988899999999999999999999999999999997 8999999999   556999999999


Q ss_pred             CCeEEEeeccccccccccCCCCccc
Q 018973          196 VPHFSFYKSMEKIHEEEGIGPDQLM  220 (348)
Q Consensus       196 ~Pt~~~~~~g~~v~~~~G~~~~~l~  220 (348)
                      +||+++|++|+.+.++.|.+.++|.
T Consensus        80 ~Pt~~~~~~G~~v~~~~G~~~~~l~  104 (111)
T d1xwaa_          80 MPTFVFLKNGVKVEEFAGANAKRLE  104 (111)
T ss_dssp             SSEEEEEETTEEEEEEESCCHHHHH
T ss_pred             ccEEEEEECCEEEEEEeCCCHHHHH
Confidence            9999999999999999997655443

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.90  E-value=5.6e-24  Score=168.26  Aligned_cols=102  Identities=31%  Similarity=0.463  Sum_probs=92.0

Q ss_pred             CCCCCceEecCHHHHHHHHHhc--CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCc
Q 018973          116 PRDERVKKVHSIEEFDEALRLA--KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKI  193 (348)
Q Consensus       116 ~~~~~v~~v~s~~~f~~~l~~~--~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V  193 (348)
                      ...+.|..++|.++|++.+.++  .+++|||+|||+||++|+.+.|.|++++++|+++.|++||+|+   .++++++|+|
T Consensus         3 ~~~~~vi~i~s~~~~~~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~vd~~~---~~~l~~~~~V   79 (114)
T d1xfla_           3 SEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDE---LKSVASDWAI   79 (114)
T ss_dssp             CCCSCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCSSEEEEEEETTT---SHHHHHHTTC
T ss_pred             CCCCcEEEEcCHHHHHHHHHHhhccCCeEEEEEEcCCCCCccccccchhhhcccccccceeEEEeee---ceeeccccce
Confidence            4567899999999999988653  4899999999999999999999999999999999999999999   5669999999


Q ss_pred             CCCCeEEEeeccccccccccCCCCccc
Q 018973          194 KKVPHFSFYKSMEKIHEEEGIGPDQLM  220 (348)
Q Consensus       194 ~~~Pt~~~~~~g~~v~~~~G~~~~~l~  220 (348)
                      +++||+++|++|+.+.++.|.++++|.
T Consensus        80 ~~~Pt~~~~~~G~~v~~~~G~~~~~l~  106 (114)
T d1xfla_          80 QAMPTFMFLKEGKILDKVVGAKKDELQ  106 (114)
T ss_dssp             CSSSEEEEEETTEEEEEEESCCHHHHH
T ss_pred             eeeEEEEEEECCEEEEEEeCcCHHHHH
Confidence            999999999999999999987655554

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.89  E-value=3.1e-23  Score=163.38  Aligned_cols=110  Identities=25%  Similarity=0.455  Sum_probs=102.4

Q ss_pred             cceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCc
Q 018973          231 SAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVE  310 (348)
Q Consensus       231 ~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~  310 (348)
                      +.+..+.+.++|++.+......+++++|+||++||++|+.+.|.++++++++++++.|+++|++++++   ++++|+|++
T Consensus         2 g~v~~i~t~~~fd~~l~~~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~---l~~~~~v~~   78 (112)
T d1ep7a_           2 GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAA---VAEAAGITA   78 (112)
T ss_dssp             CSEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHH---HHHHHTCCB
T ss_pred             CCEEEEeCHHHHHHHHHHHhhcCCeEEEEEEcCCcCCCcccchhhhhhhhcccceEEEEEeecccccc---ccccccccC
Confidence            46778889999999988765568999999999999999999999999999998889999999999987   999999999


Q ss_pred             cceEEEEeCCeEEEEEeCCChHHHHHHHHHHhC
Q 018973          311 VPTFLFIRDGQIRGRYVGSGKGELIGEILRYQG  343 (348)
Q Consensus       311 ~PTl~~~~~G~~v~~~~G~~~~~L~~~l~~~~~  343 (348)
                      +||+++|++|+.+.++.|.+.++|.++|++|.+
T Consensus        79 ~Pt~~~~~~G~~v~~~~G~~~~~l~~~i~k~~a  111 (112)
T d1ep7a_          79 MPTFHVYKDGVKADDLVGASQDKLKALVAKHAA  111 (112)
T ss_dssp             SSEEEEEETTEEEEEEESCCHHHHHHHHHHHHC
T ss_pred             CCEEEEEECCEEEEEEeCcCHHHHHHHHHHHhC
Confidence            999999999999999999999999999999875

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.89  E-value=1.1e-23  Score=163.54  Aligned_cols=95  Identities=34%  Similarity=0.484  Sum_probs=87.4

Q ss_pred             ceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEE
Q 018973          121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFS  200 (348)
Q Consensus       121 v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~  200 (348)
                      +..|.|.++|+++++  ++++++|+|||+||++|+.+.|.+++++++|+++.|+++|+|+   ..+++++|+|+++||++
T Consensus         2 v~~i~s~~~f~~~i~--~~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~vd~d~---~~~~~~~~~V~~~Pt~i   76 (103)
T d1syra_           2 VKIVTSQAEFDSIIS--QNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDE---VSEVTEKENITSMPTFK   76 (103)
T ss_dssp             CEEECSHHHHHHHHH--HCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTT---THHHHHHTTCCSSSEEE
T ss_pred             cEEeCCHHHHHHHHh--CCCcEEEEEeCCcccCcccccccchhhhhcccceEEEeecccc---CcceeeeeeeecceEEE
Confidence            677889999999998  5789999999999999999999999999999999999999999   56699999999999999


Q ss_pred             EeeccccccccccCCCCccc
Q 018973          201 FYKSMEKIHEEEGIGPDQLM  220 (348)
Q Consensus       201 ~~~~g~~v~~~~G~~~~~l~  220 (348)
                      +|++|+.++++.|.+.+.|.
T Consensus        77 ~~k~G~~v~~~~G~~~~~l~   96 (103)
T d1syra_          77 VYKNGSSVDTLLGANDSALK   96 (103)
T ss_dssp             EEETTEEEEEEESCCHHHHH
T ss_pred             EEECCEEEEEEeCcCHHHHH
Confidence            99999999999997655544

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.89  E-value=1.6e-22  Score=158.89  Aligned_cols=108  Identities=29%  Similarity=0.519  Sum_probs=100.2

Q ss_pred             ccceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCC
Q 018973          230 HSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVV  309 (348)
Q Consensus       230 ~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~  309 (348)
                      ...++++.+.++++..+.+.  ++++++|+||++||++|+.+.|.++++++++++.+.++.+|++++++   ++++|+|+
T Consensus         4 ~~~v~~i~~~~~~~~~l~~~--~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~i~~d~~~~---l~~~~~V~   78 (111)
T d1xwaa_           4 AAMVYQVKDKADLDGQLTKA--SGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECED---IAMEYNIS   78 (111)
T ss_dssp             SCCEEECCSHHHHHHHHHHH--TTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHH---HHHHTTCC
T ss_pred             CCeEEEECCHHHHHHHHHhc--CCCEEEEEEECCcccCccccchhHHHHhhhcccceEEEEEEeecCcc---hhhcCCCc
Confidence            45678899999999998875  68999999999999999999999999999998889999999999987   99999999


Q ss_pred             ccceEEEEeCCeEEEEEeCCChHHHHHHHHHHh
Q 018973          310 EVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQ  342 (348)
Q Consensus       310 ~~PTl~~~~~G~~v~~~~G~~~~~L~~~l~~~~  342 (348)
                      ++||+++|++|+.+.++.|.+.++|.++|++++
T Consensus        79 ~~Pt~~~~~~G~~v~~~~G~~~~~l~~~I~~~l  111 (111)
T d1xwaa_          79 SMPTFVFLKNGVKVEEFAGANAKRLEDVIKANI  111 (111)
T ss_dssp             SSSEEEEEETTEEEEEEESCCHHHHHHHHHHTC
T ss_pred             cccEEEEEECCEEEEEEeCCCHHHHHHHHHhcC
Confidence            999999999999999999998889999998764

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=99.89  E-value=1.5e-23  Score=165.21  Aligned_cols=100  Identities=23%  Similarity=0.299  Sum_probs=90.4

Q ss_pred             CCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCC
Q 018973          118 DERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVP  197 (348)
Q Consensus       118 ~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~P  197 (348)
                      .+.+.++ +.++|++++..+++++|+|+||++||+||+.+.|.|++++++|+++.|+++|+|+.  .++++++|+|+++|
T Consensus         5 ~g~v~~~-~~d~f~~~l~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~v~~~~vd~~~~--~~~l~~~~~V~~~P   81 (112)
T d1f9ma_           5 VGKVTEV-NKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQE--NKTLAKELGIRVVP   81 (112)
T ss_dssp             TTSEEEE-CTTTHHHHHHTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSST--THHHHHHHCCSSSS
T ss_pred             ceeeEEe-CHHHHHHHHHHcCCCEEEEEEEcCCCcchHHHHHHHhhhccccccceeeccccccc--chhhHhheeeccCC
Confidence            4678888 88889999998888999999999999999999999999999999999999999752  45799999999999


Q ss_pred             eEEEeeccccccccccCCCCccc
Q 018973          198 HFSFYKSMEKIHEEEGIGPDQLM  220 (348)
Q Consensus       198 t~~~~~~g~~v~~~~G~~~~~l~  220 (348)
                      |+++|++|+.++++.|.+.+.+.
T Consensus        82 t~~~~k~G~~v~~~~G~~~~~l~  104 (112)
T d1f9ma_          82 TFKILKENSVVGEVTGAKYDKLL  104 (112)
T ss_dssp             EEEEEETTEEEEEEESSCHHHHH
T ss_pred             EEEEEECCEEEEEEeCCCHHHHH
Confidence            99999999999999997765554

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.88  E-value=2.4e-22  Score=158.71  Aligned_cols=110  Identities=27%  Similarity=0.546  Sum_probs=101.3

Q ss_pred             ccceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCC
Q 018973          230 HSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVV  309 (348)
Q Consensus       230 ~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~  309 (348)
                      ...++.+.+.+++++.+.+....+++++|+||++||++|+.+.|.|+++++.+++ +.|+.+|++++++   ++++|+|+
T Consensus         5 ~~~vi~i~s~~~~~~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~-~~~~~vd~~~~~~---l~~~~~V~   80 (114)
T d1xfla_           5 EGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPN-VLFLKVDTDELKS---VASDWAIQ   80 (114)
T ss_dssp             CSCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCSS-EEEEEEETTTSHH---HHHHTTCC
T ss_pred             CCcEEEEcCHHHHHHHHHHhhccCCeEEEEEEcCCCCCccccccchhhhcccccc-cceeEEEeeecee---ecccccee
Confidence            4567888899999998887666789999999999999999999999999999964 8999999999988   99999999


Q ss_pred             ccceEEEEeCCeEEEEEeCCChHHHHHHHHHHhC
Q 018973          310 EVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQG  343 (348)
Q Consensus       310 ~~PTl~~~~~G~~v~~~~G~~~~~L~~~l~~~~~  343 (348)
                      ++||+++|++|+.+.++.|.++++|.++|++++.
T Consensus        81 ~~Pt~~~~~~G~~v~~~~G~~~~~l~~~i~k~la  114 (114)
T d1xfla_          81 AMPTFMFLKEGKILDKVVGAKKDELQSTIAKHLA  114 (114)
T ss_dssp             SSSEEEEEETTEEEEEEESCCHHHHHHHHHHHCC
T ss_pred             eeEEEEEEECCEEEEEEeCcCHHHHHHHHHHhhC
Confidence            9999999999999999999999999999999863

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.88  E-value=1.7e-23  Score=164.96  Aligned_cols=100  Identities=27%  Similarity=0.351  Sum_probs=90.2

Q ss_pred             CCCceEecCHHHHHHHHHhc--CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcC
Q 018973          118 DERVKKVHSIEEFDEALRLA--KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIK  194 (348)
Q Consensus       118 ~~~v~~v~s~~~f~~~l~~~--~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~  194 (348)
                      ++.|+.|.|.++|++.+.++  .+++|||+|||+||++|+.+.|.|+++++++++ +.|+.||+|+   .++++++|+|+
T Consensus         1 gg~v~~i~t~~~fd~~l~~~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~---~~~l~~~~~v~   77 (112)
T d1ep7a_           1 GGSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDA---VAAVAEAAGIT   77 (112)
T ss_dssp             CCSEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTT---THHHHHHHTCC
T ss_pred             CCCEEEEeCHHHHHHHHHHHhhcCCeEEEEEEcCCcCCCcccchhhhhhhhcccceEEEEEeeccc---ccccccccccc
Confidence            36799999999999998764  379999999999999999999999999999986 9999999999   56699999999


Q ss_pred             CCCeEEEeeccccccccccCCCCccc
Q 018973          195 KVPHFSFYKSMEKIHEEEGIGPDQLM  220 (348)
Q Consensus       195 ~~Pt~~~~~~g~~v~~~~G~~~~~l~  220 (348)
                      ++||+++|++|+.+.++.|.+.++|.
T Consensus        78 ~~Pt~~~~~~G~~v~~~~G~~~~~l~  103 (112)
T d1ep7a_          78 AMPTFHVYKDGVKADDLVGASQDKLK  103 (112)
T ss_dssp             BSSEEEEEETTEEEEEEESCCHHHHH
T ss_pred             CCCEEEEEECCEEEEEEeCcCHHHHH
Confidence            99999999999999999986655544

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.4e-22  Score=156.38  Aligned_cols=104  Identities=30%  Similarity=0.535  Sum_probs=95.8

Q ss_pred             eeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccc
Q 018973          233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVP  312 (348)
Q Consensus       233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~P  312 (348)
                      +.++.+.++|++.+..+  .+++++|+||++||++|+.+.|.+.++++++++ +.|+++|++++++   ++++|+|+++|
T Consensus         2 v~~i~s~~~f~~~l~~~--~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~~-~~~~~vd~d~~~~---~~~~~~V~~~P   75 (105)
T d2ifqa1           2 VKQIESKTAFQEALDAA--GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN-VIFLEVDVDDCQD---VASECEVKCMP   75 (105)
T ss_dssp             CEEECSHHHHHHHHHHT--TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTCHH---HHHHTTCCBSS
T ss_pred             eEEcCCHHHHHHHHHhC--CCCEEEEEEEcCCccchhhhhhhhhhhcccccc-ceeeecccccCHh---HHHHcCceEEE
Confidence            56778999999999865  578999999999999999999999999999965 7799999999988   99999999999


Q ss_pred             eEEEEeCCeEEEEEeCCChHHHHHHHHHHh
Q 018973          313 TFLFIRDGQIRGRYVGSGKGELIGEILRYQ  342 (348)
Q Consensus       313 Tl~~~~~G~~v~~~~G~~~~~L~~~l~~~~  342 (348)
                      |+++|++|+.+.++.|.++++|.++|++++
T Consensus        76 t~~~~~~G~~v~~~~G~~~~~l~~~i~~~l  105 (105)
T d2ifqa1          76 TFQFFKKGQKVGEFSGANKEKLEATINELV  105 (105)
T ss_dssp             EEEEEETTEEEEEEESCCHHHHHHHHHHHC
T ss_pred             EEEEEECCEEEEEEeCCCHHHHHHHHHhhC
Confidence            999999999999999999999999998864

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=99.88  E-value=2.5e-22  Score=158.34  Aligned_cols=109  Identities=28%  Similarity=0.514  Sum_probs=101.0

Q ss_pred             cceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCc
Q 018973          231 SAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVE  310 (348)
Q Consensus       231 ~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~  310 (348)
                      +.++.+++.+++++.+.....++++++|+||++||++|+.+.|.|.++++++. ++.|+.+|++++++   ++++|+|++
T Consensus         4 g~vi~i~s~e~~~~~l~~~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~-~~~~~~vd~d~~~~---l~~~~~I~~   79 (113)
T d1ti3a_           4 GQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP-NVTFLKVDVDELKA---VAEEWNVEA   79 (113)
T ss_dssp             CCEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS-SEEEEEEETTTCHH---HHHHHHCSS
T ss_pred             CcEEEEeCHHHHHHHHHHHHcCCCEEEEEEEcCccccchhhhhhhhhhhccCC-CceEEeeeeecccc---ccccCeecc
Confidence            46888999999999988776678999999999999999999999999999996 48999999999987   999999999


Q ss_pred             cceEEEEeCCeEEEEEeCCChHHHHHHHHHHhC
Q 018973          311 VPTFLFIRDGQIRGRYVGSGKGELIGEILRYQG  343 (348)
Q Consensus       311 ~PTl~~~~~G~~v~~~~G~~~~~L~~~l~~~~~  343 (348)
                      +||+++|++|+.+.++.|.+.++|.++|.+|..
T Consensus        80 ~Pt~~~~k~G~~v~~~~G~~~~~l~~~i~k~as  112 (113)
T d1ti3a_          80 MPTFIFLKDGKLVDKTVGADKDGLPTLVAKHAT  112 (113)
T ss_dssp             TTEEEEEETTEEEEEEECCCTTHHHHHHHHHHH
T ss_pred             cceEEEEECCEEEEEEcCCCHHHHHHHHHHHhC
Confidence            999999999999999999988999999999853

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=4.7e-22  Score=155.21  Aligned_cols=104  Identities=22%  Similarity=0.408  Sum_probs=96.6

Q ss_pred             eeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccc
Q 018973          233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVP  312 (348)
Q Consensus       233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~P  312 (348)
                      +..+.+.++|++.+.++  ++++++|+||++||++|+.+.|.|+++++++++ +.|+++|++++++   ++++|+|.++|
T Consensus         3 v~~i~s~~~f~~~l~~~--~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~~-~~f~~vd~d~~~~---l~~~~~v~~~P   76 (107)
T d1gh2a_           3 VKPVGSDPDFQPELSGA--GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQ-AVFLEVDVHQCQG---TAATNNISATP   76 (107)
T ss_dssp             EEEECSGGGHHHHHHHT--TTSCEEEEEECSSCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTSHH---HHHHTTCCSSS
T ss_pred             eEEcCCHHHHHHHHHhC--CCCEEEEEEECCCCCCccccchhhhcccccccc-ccccccccccchh---hhhhcCceece
Confidence            45677899999999865  578999999999999999999999999999964 8999999999988   99999999999


Q ss_pred             eEEEEeCCeEEEEEeCCChHHHHHHHHHHh
Q 018973          313 TFLFIRDGQIRGRYVGSGKGELIGEILRYQ  342 (348)
Q Consensus       313 Tl~~~~~G~~v~~~~G~~~~~L~~~l~~~~  342 (348)
                      |+++|++|+.++++.|.++++|.++|++++
T Consensus        77 t~~~~~~G~~v~~~~G~~~~~l~~~i~k~l  106 (107)
T d1gh2a_          77 TFQFFRNKVRIDQYQGADAVGLEEKIKQHL  106 (107)
T ss_dssp             EEEEEETTEEEEEEESSCHHHHHHHHHHHH
T ss_pred             EEEEEECCEEEEEEeCCCHHHHHHHHHHhh
Confidence            999999999999999999999999999986

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=99.87  E-value=9.8e-22  Score=153.53  Aligned_cols=105  Identities=16%  Similarity=0.306  Sum_probs=95.1

Q ss_pred             ceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCcc
Q 018973          232 AVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEV  311 (348)
Q Consensus       232 ~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~  311 (348)
                      .+.++ +.++|++.+.+   .+++++|+||++||++|+.+.|.|.+++.++++++.|+++|++++++   ++++|+|+++
T Consensus         3 ~V~~l-t~~~f~~~v~~---~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~d~~~~---l~~~~~I~~~   75 (108)
T d1thxa_           3 GVITI-TDAEFESEVLK---AEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPT---TVKKYKVEGV   75 (108)
T ss_dssp             SEEEC-CGGGHHHHTTT---CSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHH---HHHHTTCCSS
T ss_pred             CceEC-CHHHHHHHHHh---CCCcEEEEEECCCCCCccccchHHHHHHHhcCCcceeceecccccHH---HHHHhcccCC
Confidence            35566 55788876654   37899999999999999999999999999998889999999999988   9999999999


Q ss_pred             ceEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973          312 PTFLFIRDGQIRGRYVGS-GKGELIGEILRYQG  343 (348)
Q Consensus       312 PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~  343 (348)
                      ||+++|++|+.+.++.|. +.++|.++|+++++
T Consensus        76 Pt~~~~~~g~~v~~~~G~~~~~~l~~~i~~~Ln  108 (108)
T d1thxa_          76 PALRLVKGEQILDSTEGVISKDKLLSFLDTHLN  108 (108)
T ss_dssp             SEEEEEETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             CEEEEEECCEEEEEEeCCCCHHHHHHHHHHhcC
Confidence            999999999999999999 99999999999874

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.87  E-value=5.6e-22  Score=154.70  Aligned_cols=100  Identities=16%  Similarity=0.428  Sum_probs=93.5

Q ss_pred             ChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEE
Q 018973          238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFI  317 (348)
Q Consensus       238 s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~  317 (348)
                      +.++|++.+.+   ++++++|+||++||++|+.+.|.+.+++.++.+++.++++|++++++   ++++|+|+++||+++|
T Consensus         7 ~~~~f~~~v~~---s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~d~~~~---l~~~~~V~~~Pt~~~~   80 (107)
T d1dbya_           7 NDDTFKNVVLE---SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPN---VASEYGIRSIPTIMVF   80 (107)
T ss_dssp             CHHHHHHHTTT---CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH---HHHHHTCCSSCEEEEE
T ss_pred             cHHHHHHHHHh---CCCcEEEEEECCCCCCccccChHHHHHHHhhcccceEEEEecccchh---HHHHhcccceEEEEEE
Confidence            56889888765   47899999999999999999999999999998889999999999987   9999999999999999


Q ss_pred             eCCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973          318 RDGQIRGRYVGS-GKGELIGEILRYQG  343 (348)
Q Consensus       318 ~~G~~v~~~~G~-~~~~L~~~l~~~~~  343 (348)
                      ++|+.+.++.|. +.++|.++|+++++
T Consensus        81 ~~G~~v~~~~G~~~~~~l~~~i~~~L~  107 (107)
T d1dbya_          81 KGGKKCETIIGAVPKATIVQTVEKYLN  107 (107)
T ss_dssp             SSSSEEEEEESCCCHHHHHHHHHHHCC
T ss_pred             ECCeEEEEEeCCCCHHHHHHHHHHhhC
Confidence            999999999999 99999999999874

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=99.86  E-value=5.9e-22  Score=154.01  Aligned_cols=98  Identities=21%  Similarity=0.449  Sum_probs=91.1

Q ss_pred             ChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEE
Q 018973          238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFI  317 (348)
Q Consensus       238 s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~  317 (348)
                      +.++|++.++    ++++++|+||++||++|+.+.|.+.+++.++++++.|+++|++++++   ++++|+|.++||+++|
T Consensus         6 t~~~f~~~i~----~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~---~~~~~~V~~~Pt~~~~   78 (105)
T d1nw2a_           6 TDANFQQAIQ----GDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPE---TTSQFGIMSIPTLILF   78 (105)
T ss_dssp             CTTTHHHHTT----SSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHH---HHHHTTCCBSSEEEEE
T ss_pred             CHHHHHHHHh----CCCcEEEEEECCCCCCcccccchhhhhhhhcCCceEEEEEECCCCcc---cHHHCCcceeeEEEEE
Confidence            4577888876    46899999999999999999999999999998889999999999988   9999999999999999


Q ss_pred             eCCeEEEEEeCC-ChHHHHHHHHHHh
Q 018973          318 RDGQIRGRYVGS-GKGELIGEILRYQ  342 (348)
Q Consensus       318 ~~G~~v~~~~G~-~~~~L~~~l~~~~  342 (348)
                      ++|+.+.++.|. +.++|.++|++++
T Consensus        79 ~~G~~~~~~~G~~~~~~l~~~i~~~L  104 (105)
T d1nw2a_          79 KGGEPVKQLIGYQPKEQLEAQLADVL  104 (105)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHTTTTC
T ss_pred             ECCEEEEEEECCCCHHHHHHHHHHHh
Confidence            999999999999 9999999998765

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=2.4e-21  Score=151.26  Aligned_cols=105  Identities=21%  Similarity=0.449  Sum_probs=94.5

Q ss_pred             ceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCcc
Q 018973          232 AVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEV  311 (348)
Q Consensus       232 ~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~  311 (348)
                      .+.++ +.++|++.+.+   .+++++|+||++||++|+.+.|.+.+++.++.+++.++.+|+++++.   ++++|+|.++
T Consensus         3 ~v~~l-t~~~f~~~v~~---~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~vd~d~~~~---l~~~~~v~~~   75 (108)
T d2trxa_           3 KIIHL-TDDSFDTDVLK---ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG---TAPKYGIRGI   75 (108)
T ss_dssp             TEEEC-CTTTHHHHTTT---CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTT---HHHHTTCCSS
T ss_pred             CceEC-CHHHHHHHHHh---CCCcEEEEEECCCCCCccccCcHHHHHHHHhhcceeeeeccccchhh---HHHHhCCCcE
Confidence            45565 45778876654   47999999999999999999999999999998889999999999988   9999999999


Q ss_pred             ceEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973          312 PTFLFIRDGQIRGRYVGS-GKGELIGEILRYQG  343 (348)
Q Consensus       312 PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~  343 (348)
                      ||+++|++|+.+.++.|. +.++|.++|++++.
T Consensus        76 PT~~~~~~G~~v~~~~G~~~~~~l~~~i~~~Ls  108 (108)
T d2trxa_          76 PTLLLFKNGEVAATKVGALSKGQLKEFLDANLA  108 (108)
T ss_dssp             SEEEEEETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EEEEEEECCEEEEEEeCCCCHHHHHHHHHHhcC
Confidence            999999999999999999 99999999998863

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.86  E-value=2.1e-21  Score=152.99  Aligned_cols=106  Identities=25%  Similarity=0.489  Sum_probs=97.2

Q ss_pred             CccceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCC
Q 018973          229 SHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNV  308 (348)
Q Consensus       229 ~~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V  308 (348)
                      ..+.++++.+.++|++++.+    +++++|+||++||++|+.+.|.|.+++++++ ++.|+++|++++++   ++++|+|
T Consensus         6 ~~p~vi~i~s~~~~~~~~~~----~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~~~~---l~~~~~V   77 (113)
T d1r26a_           6 RYPSVVDVYSVEQFRNIMSE----DILTVAWFTAVWCGPCKTIERPMEKIAYEFP-TVKFAKVDADNNSE---IVSKCRV   77 (113)
T ss_dssp             CCSCCEEECCHHHHHHHHHS----SSCEEEEEECTTCHHHHHTHHHHHHHHHHCT-TSEEEEEETTTCHH---HHHHTTC
T ss_pred             CCCceEEeCCHHHHHHHHcC----CCeEEEEEECCCCccchhhceeccccccccc-cccccccccccchh---hHHHccc
Confidence            34568889999999999974    6899999999999999999999999999996 69999999999988   9999999


Q ss_pred             CccceEEEEeCCeEEEEEeCCChHHHHHHHHHHh
Q 018973          309 VEVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQ  342 (348)
Q Consensus       309 ~~~PTl~~~~~G~~v~~~~G~~~~~L~~~l~~~~  342 (348)
                      .++||+++|++|+.+.++.|.+++.+.+.|++++
T Consensus        78 ~~~Pt~~~~~~G~~v~~~~G~~~~~l~~~l~~~i  111 (113)
T d1r26a_          78 LQLPTFIIARSGKMLGHVIGANPGMLRQKLRDII  111 (113)
T ss_dssp             CSSSEEEEEETTEEEEEEESSCHHHHHHHHHHHH
T ss_pred             cCCCEEEEEECCEEEEEEeCCCHHHHHHHHHHHh
Confidence            9999999999999999999998888888888764

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=99.86  E-value=1.3e-21  Score=151.82  Aligned_cols=99  Identities=22%  Similarity=0.520  Sum_probs=92.0

Q ss_pred             ChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEE
Q 018973          238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFI  317 (348)
Q Consensus       238 s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~  317 (348)
                      +.++|++.+.+   ++++++|+||++||++|+.+.|.+.++++++.+++.++.+|++++++   ++++|+|+++||+++|
T Consensus         5 ~d~~f~~~v~~---~~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~v~~d~~~~---l~~~~~V~~~Pt~~~~   78 (104)
T d1fb6a_           5 NDSSWKEFVLE---SEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPG---IATQYNIRSIPTVLFF   78 (104)
T ss_dssp             CTTTHHHHTTT---CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH---HHHHTTCCSSSEEEEE
T ss_pred             chhhHHHHHHc---CCCcEEEEEEcCccCCccccCchhHHHHHhhcCccceeEEecccchh---hhhhcceeeeeEEEEE
Confidence            45778887765   47899999999999999999999999999998889999999999988   9999999999999999


Q ss_pred             eCCeEEEEEeCC-ChHHHHHHHHHHh
Q 018973          318 RDGQIRGRYVGS-GKGELIGEILRYQ  342 (348)
Q Consensus       318 ~~G~~v~~~~G~-~~~~L~~~l~~~~  342 (348)
                      ++|+.+.++.|. +.++|.++|++++
T Consensus        79 ~~G~~v~~~~G~~~~~~l~~~i~~~L  104 (104)
T d1fb6a_          79 KNGERKESIIGAVPKSTLTDSIEKYL  104 (104)
T ss_dssp             ETTEEEEEEEECCCHHHHHHHHHHHC
T ss_pred             EcCeEEEEEeCCCCHHHHHHHHHHhC
Confidence            999999999999 9999999999875

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.86  E-value=2e-21  Score=150.45  Aligned_cols=102  Identities=24%  Similarity=0.479  Sum_probs=93.5

Q ss_pred             eeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccc
Q 018973          233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVP  312 (348)
Q Consensus       233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~P  312 (348)
                      +..+.+.++|++++++    +++++|+||++||++|+.+.|.++++++++++ +.|+++|++++++   ++++|+|.++|
T Consensus         2 v~~i~s~~~f~~~i~~----~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~-~~~~~vd~d~~~~---~~~~~~V~~~P   73 (103)
T d1syra_           2 VKIVTSQAEFDSIISQ----NELVIVDFFAEWCGPCKRIAPFYEECSKTYTK-MVFIKVDVDEVSE---VTEKENITSMP   73 (103)
T ss_dssp             CEEECSHHHHHHHHHH----CSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTTHH---HHHHTTCCSSS
T ss_pred             cEEeCCHHHHHHHHhC----CCcEEEEEeCCcccCcccccccchhhhhcccc-eEEEeeccccCcc---eeeeeeeecce
Confidence            3456789999999975    68999999999999999999999999999964 7899999999987   99999999999


Q ss_pred             eEEEEeCCeEEEEEeCCChHHHHHHHHHHh
Q 018973          313 TFLFIRDGQIRGRYVGSGKGELIGEILRYQ  342 (348)
Q Consensus       313 Tl~~~~~G~~v~~~~G~~~~~L~~~l~~~~  342 (348)
                      |+++|++|+.+.++.|.+.++|.++|++|.
T Consensus        74 t~i~~k~G~~v~~~~G~~~~~l~~~i~k~a  103 (103)
T d1syra_          74 TFKVYKNGSSVDTLLGANDSALKQLIEKYA  103 (103)
T ss_dssp             EEEEEETTEEEEEEESCCHHHHHHHHHTTC
T ss_pred             EEEEEECCEEEEEEeCcCHHHHHHHHHhhC
Confidence            999999999999999998899999998863

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=99.85  E-value=7.3e-22  Score=153.50  Aligned_cols=88  Identities=20%  Similarity=0.294  Sum_probs=80.7

Q ss_pred             eEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCeEE
Q 018973          122 KKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPHFS  200 (348)
Q Consensus       122 ~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~  200 (348)
                      .++ |.++|++.++  ++++|+|+|||+||+||+.+.|.+++++++|++ +.|++||+|+   .+++|++|+|.++||++
T Consensus         3 i~l-t~~~f~~~i~--~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~vd~~~---~~~~~~~~~V~~~Pt~~   76 (105)
T d1nw2a_           3 MTL-TDANFQQAIQ--GDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDE---NPETTSQFGIMSIPTLI   76 (105)
T ss_dssp             EEE-CTTTHHHHTT--SSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTT---CHHHHHHTTCCBSSEEE
T ss_pred             EEE-CHHHHHHHHh--CCCcEEEEEECCCCCCcccccchhhhhhhhcCCceEEEEEECCC---CcccHHHCCcceeeEEE
Confidence            445 7889999886  689999999999999999999999999999986 9999999999   55699999999999999


Q ss_pred             EeeccccccccccCC
Q 018973          201 FYKSMEKIHEEEGIG  215 (348)
Q Consensus       201 ~~~~g~~v~~~~G~~  215 (348)
                      +|++|+.+.++.|..
T Consensus        77 ~~~~G~~~~~~~G~~   91 (105)
T d1nw2a_          77 LFKGGEPVKQLIGYQ   91 (105)
T ss_dssp             EEETTEEEEEEESCC
T ss_pred             EEECCEEEEEEECCC
Confidence            999999999998854

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.5e-21  Score=158.77  Aligned_cols=93  Identities=15%  Similarity=0.217  Sum_probs=84.0

Q ss_pred             CceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCe
Q 018973          120 RVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPH  198 (348)
Q Consensus       120 ~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt  198 (348)
                      .+.+++|.++|++++....+++|||+|||+||++|+.+.|.|++++++|++ +.|++||+|+.+   +++++|+|+++||
T Consensus         3 ~l~~l~s~~~~dq~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~VDvd~~~---~la~~~~I~~~PT   79 (137)
T d1qgva_           3 MLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVP---DFNKMYELYDPCT   79 (137)
T ss_dssp             SSCBCCSHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCC---TTTTSSCSCSSCE
T ss_pred             cccccCCHHHHHHHHHhCCCCEEEEEEECCCCccchhcChHHHHHHHHhhccceEEEeeccccc---hhhhhcCeeeEEE
Confidence            356788999999999988899999999999999999999999999999988 899999999955   4999999999999


Q ss_pred             EEEeeccccccccccCC
Q 018973          199 FSFYKSMEKIHEEEGIG  215 (348)
Q Consensus       199 ~~~~~~g~~v~~~~G~~  215 (348)
                      +++|++|+.+....|..
T Consensus        80 ~~~f~~g~~i~~~~g~~   96 (137)
T d1qgva_          80 VMFFFRNKHIMIDLGTG   96 (137)
T ss_dssp             EEEEETTEEEEEECC--
T ss_pred             EEEEeCCcEEEEEecCC
Confidence            99999999987766643

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.84  E-value=3e-21  Score=150.47  Aligned_cols=89  Identities=18%  Similarity=0.265  Sum_probs=80.8

Q ss_pred             ceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCeE
Q 018973          121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPHF  199 (348)
Q Consensus       121 v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~  199 (348)
                      +..| |.++|++.+.+ .+++|+|+|||+||++|+.+.|.++++++++.+ +.|+.||+|+   .++++++|+|+++||+
T Consensus         3 ~~~i-~~~~f~~~v~~-s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~d~---~~~l~~~~~V~~~Pt~   77 (107)
T d1dbya_           3 AGAV-NDDTFKNVVLE-SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDE---SPNVASEYGIRSIPTI   77 (107)
T ss_dssp             CEEE-CHHHHHHHTTT-CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTT---CHHHHHHHTCCSSCEE
T ss_pred             ceEe-cHHHHHHHHHh-CCCcEEEEEECCCCCCccccChHHHHHHHhhcccceEEEEeccc---chhHHHHhcccceEEE
Confidence            4566 78999998764 578999999999999999999999999999875 9999999999   5569999999999999


Q ss_pred             EEeeccccccccccC
Q 018973          200 SFYKSMEKIHEEEGI  214 (348)
Q Consensus       200 ~~~~~g~~v~~~~G~  214 (348)
                      ++|++|+.+.++.|.
T Consensus        78 ~~~~~G~~v~~~~G~   92 (107)
T d1dbya_          78 MVFKGGKKCETIIGA   92 (107)
T ss_dssp             EEESSSSEEEEEESC
T ss_pred             EEEECCeEEEEEeCC
Confidence            999999999999885

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=99.84  E-value=2.1e-21  Score=150.59  Aligned_cols=89  Identities=20%  Similarity=0.295  Sum_probs=80.7

Q ss_pred             ceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCeE
Q 018973          121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPHF  199 (348)
Q Consensus       121 v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~  199 (348)
                      |.++ |.++|++.+.+ .+++|+|+|||+||++|+.+.|.++++++++.+ +.++.||+|+   .++++++|+|+++||+
T Consensus         1 v~el-~d~~f~~~v~~-~~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~v~~d~---~~~l~~~~~V~~~Pt~   75 (104)
T d1fb6a_           1 VQDV-NDSSWKEFVLE-SEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDE---APGIATQYNIRSIPTV   75 (104)
T ss_dssp             CEEC-CTTTHHHHTTT-CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTT---CHHHHHHTTCCSSSEE
T ss_pred             CeEC-chhhHHHHHHc-CCCcEEEEEEcCccCCccccCchhHHHHHhhcCccceeEEeccc---chhhhhhcceeeeeEE
Confidence            4566 77889998764 588999999999999999999999999999977 8999999999   5569999999999999


Q ss_pred             EEeeccccccccccC
Q 018973          200 SFYKSMEKIHEEEGI  214 (348)
Q Consensus       200 ~~~~~g~~v~~~~G~  214 (348)
                      ++|++|+.++++.|.
T Consensus        76 ~~~~~G~~v~~~~G~   90 (104)
T d1fb6a_          76 LFFKNGERKESIIGA   90 (104)
T ss_dssp             EEEETTEEEEEEEEC
T ss_pred             EEEEcCeEEEEEeCC
Confidence            999999999999885

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=99.83  E-value=4.3e-21  Score=149.82  Aligned_cols=90  Identities=19%  Similarity=0.259  Sum_probs=81.4

Q ss_pred             CceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCe
Q 018973          120 RVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPH  198 (348)
Q Consensus       120 ~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt  198 (348)
                      .|.++ |.++|++.+.+ .+++|+|+|||+||++|+.+.|.|+++++++++ +.|++||+|+   .++++++|+|+++||
T Consensus         3 ~V~~l-t~~~f~~~v~~-~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~d~---~~~l~~~~~I~~~Pt   77 (108)
T d1thxa_           3 GVITI-TDAEFESEVLK-AEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDP---NPTTVKKYKVEGVPA   77 (108)
T ss_dssp             SEEEC-CGGGHHHHTTT-CSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTT---CHHHHHHTTCCSSSE
T ss_pred             CceEC-CHHHHHHHHHh-CCCcEEEEEECCCCCCccccchHHHHHHHhcCCcceeceecccc---cHHHHHHhcccCCCE
Confidence            47788 78999987653 578999999999999999999999999999987 8999999999   556999999999999


Q ss_pred             EEEeeccccccccccC
Q 018973          199 FSFYKSMEKIHEEEGI  214 (348)
Q Consensus       199 ~~~~~~g~~v~~~~G~  214 (348)
                      +++|++|+.+.++.|.
T Consensus        78 ~~~~~~g~~v~~~~G~   93 (108)
T d1thxa_          78 LRLVKGEQILDSTEGV   93 (108)
T ss_dssp             EEEEETTEEEEEEESC
T ss_pred             EEEEECCEEEEEEeCC
Confidence            9999999999998884

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=99.83  E-value=1.7e-20  Score=147.49  Aligned_cols=105  Identities=23%  Similarity=0.506  Sum_probs=92.4

Q ss_pred             cceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCC-chhHHHHHHhCCCC
Q 018973          231 SAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDE-NDSCMQFLRDMNVV  309 (348)
Q Consensus       231 ~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~-~~~~~~l~~~~~V~  309 (348)
                      +.+.++ +.++|.+.+..+  .+++++|+||++||++|+.+.|.|+++++++++ +.|+.+|+++ +++   ++++|+|+
T Consensus         6 g~v~~~-~~d~f~~~l~~~--~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~-v~~~~vd~~~~~~~---l~~~~~V~   78 (112)
T d1f9ma_           6 GKVTEV-NKDTFWPIVKAA--GDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD-VIFLKLDCNQENKT---LAKELGIR   78 (112)
T ss_dssp             TSEEEE-CTTTHHHHHHTC--TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSSTTHH---HHHHHCCS
T ss_pred             eeeEEe-CHHHHHHHHHHc--CCCEEEEEEEcCCCcchHHHHHHHhhhcccccc-ceeecccccccchh---hHhheeec
Confidence            345555 556788888764  578999999999999999999999999999965 8899999975 566   99999999


Q ss_pred             ccceEEEEeCCeEEEEEeCCChHHHHHHHHHHh
Q 018973          310 EVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQ  342 (348)
Q Consensus       310 ~~PTl~~~~~G~~v~~~~G~~~~~L~~~l~~~~  342 (348)
                      ++||+++|++|+.+.++.|.+.+++.++|+++.
T Consensus        79 ~~Pt~~~~k~G~~v~~~~G~~~~~l~e~i~~~~  111 (112)
T d1f9ma_          79 VVPTFKILKENSVVGEVTGAKYDKLLEAIQAAR  111 (112)
T ss_dssp             SSSEEEEEETTEEEEEEESSCHHHHHHHHHHHH
T ss_pred             cCCEEEEEECCEEEEEEeCCCHHHHHHHHHHcc
Confidence            999999999999999999998899999998875

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=6.6e-21  Score=148.69  Aligned_cols=91  Identities=14%  Similarity=0.265  Sum_probs=81.0

Q ss_pred             CCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCC
Q 018973          119 ERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVP  197 (348)
Q Consensus       119 ~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~P  197 (348)
                      +.|.++ |.++|++.+.+ .+++|+|+|||+||+||+.+.|.+.++++++.+ +.++++|+|+.+   +++++|+|+++|
T Consensus         2 ~~v~~l-t~~~f~~~v~~-~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~vd~d~~~---~l~~~~~v~~~P   76 (108)
T d2trxa_           2 DKIIHL-TDDSFDTDVLK-ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP---GTAPKYGIRGIP   76 (108)
T ss_dssp             TTEEEC-CTTTHHHHTTT-CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCT---THHHHTTCCSSS
T ss_pred             CCceEC-CHHHHHHHHHh-CCCcEEEEEECCCCCCccccCcHHHHHHHHhhcceeeeeccccchh---hHHHHhCCCcEE
Confidence            357787 67899886643 589999999999999999999999999998765 999999999954   599999999999


Q ss_pred             eEEEeeccccccccccC
Q 018973          198 HFSFYKSMEKIHEEEGI  214 (348)
Q Consensus       198 t~~~~~~g~~v~~~~G~  214 (348)
                      |+++|++|+.+.++.|.
T Consensus        77 T~~~~~~G~~v~~~~G~   93 (108)
T d2trxa_          77 TLLLFKNGEVAATKVGA   93 (108)
T ss_dssp             EEEEEETTEEEEEEESC
T ss_pred             EEEEEECCEEEEEEeCC
Confidence            99999999999999885

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.1e-19  Score=147.60  Aligned_cols=104  Identities=16%  Similarity=0.238  Sum_probs=91.8

Q ss_pred             eeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccc
Q 018973          233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVP  312 (348)
Q Consensus       233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~P  312 (348)
                      +..+++.+++++.+...  .+++++|+||++||++|+++.|.|.++++++++++.|++||++++++   ++++|+|+++|
T Consensus         4 l~~l~s~~~~dq~i~~~--~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~VDvd~~~~---la~~~~I~~~P   78 (137)
T d1qgva_           4 LPHLHNGWQVDQAILSE--EDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPD---FNKMYELYDPC   78 (137)
T ss_dssp             SCBCCSHHHHHHHHHTC--SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCT---TTTSSCSCSSC
T ss_pred             ccccCCHHHHHHHHHhC--CCCEEEEEEECCCCccchhcChHHHHHHHHhhccceEEEeeccccch---hhhhcCeeeEE
Confidence            45678899999999865  57899999999999999999999999999998889999999999998   99999999999


Q ss_pred             eEEEEeCCeEEEEEeCC-----------ChHHHHHHHHHH
Q 018973          313 TFLFIRDGQIRGRYVGS-----------GKGELIGEILRY  341 (348)
Q Consensus       313 Tl~~~~~G~~v~~~~G~-----------~~~~L~~~l~~~  341 (348)
                      |+++|++|+.+....|.           +.+++++.++..
T Consensus        79 T~~~f~~g~~i~~~~g~~~~~k~~~~l~~~~~~i~~ie~i  118 (137)
T d1qgva_          79 TVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETV  118 (137)
T ss_dssp             EEEEEETTEEEEEECC------CCSCCSCHHHHHHHHHHH
T ss_pred             EEEEEeCCcEEEEEecCCCcceeeeehhhhHHHHHHHHHH
Confidence            99999999988655542           567788777765

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=3.3e-20  Score=147.36  Aligned_cols=94  Identities=21%  Similarity=0.300  Sum_probs=82.2

Q ss_pred             eEecCHHHHHHHHHhcCCCEEEEEEeCC-------CCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCch----hHHHHHH
Q 018973          122 KKVHSIEEFDEALRLAKNKLVVVEFAAS-------RSLDSSKIYPFMVDLSRQCND-VEFILVMGDESE----KTKELCE  189 (348)
Q Consensus       122 ~~v~s~~~f~~~l~~~~~k~vvV~F~a~-------wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~----~~~~l~~  189 (348)
                      +.|.+.++|.++|.++++++|+|+|||+       ||+||+++.|.++++++++++ +.|++||+++.+    ....+++
T Consensus         4 i~v~~~~e~~~~l~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~~~~~~~vdv~~~~~~~d~~~~l~~   83 (119)
T d1woua_           4 VSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRK   83 (119)
T ss_dssp             EEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHH
T ss_pred             EEeCCHHHHHHHHHHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCCceEEEEEECCCCcccchhhhhHHH
Confidence            5688999999999998899999999995       999999999999999999986 999999997632    2346899


Q ss_pred             HcCcCCCCeEEEeeccccccccccCC
Q 018973          190 REKIKKVPHFSFYKSMEKIHEEEGIG  215 (348)
Q Consensus       190 ~~~V~~~Pt~~~~~~g~~v~~~~G~~  215 (348)
                      +|+|+++||+++|++|+.+.+..+.+
T Consensus        84 ~~~V~~iPT~i~~~~g~~l~~~~~~~  109 (119)
T d1woua_          84 NLKVTAVPTLLKYGTPQKLVESECLQ  109 (119)
T ss_dssp             HHCCCSSSEEEETTSSCEEEGGGGGC
T ss_pred             hCCeEEEEEEEEEECCeEEeeeecCC
Confidence            99999999999999998877655543

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.79  E-value=5.5e-19  Score=137.32  Aligned_cols=99  Identities=17%  Similarity=0.272  Sum_probs=84.2

Q ss_pred             hhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHH----hCCcEEEEEEECCCchhHHHHHHhCCCCccceEE
Q 018973          240 EDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQ----MAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL  315 (348)
Q Consensus       240 ~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~----~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~  315 (348)
                      ++..+.+.+.  +++.+++.||++||++|+.+.|.+.+++.+    +.+++.+..+|++++++   ++++|+|.++||++
T Consensus         4 ~~~~e~~~~~--~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~~~---l~~~~~V~~vPTi~   78 (107)
T d1a8la2           4 DETKQAIRNI--DQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPE---WADQYNVMAVPKIV   78 (107)
T ss_dssp             HHHHHHHTTC--CSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHH---HHHHTTCCSSCEEE
T ss_pred             HHHHHHHHhc--CCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEeccccccc---cccccccccceEEE
Confidence            3444555543  455667789999999999999999999765    34569999999999987   99999999999999


Q ss_pred             EEeCCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973          316 FIRDGQIRGRYVGS-GKGELIGEILRYQG  343 (348)
Q Consensus       316 ~~~~G~~v~~~~G~-~~~~L~~~l~~~~~  343 (348)
                      ++++|+.+.++.|. +.++|.++|.+.++
T Consensus        79 i~~~G~~~~~~~G~~~~~~~~~~i~~al~  107 (107)
T d1a8la2          79 IQVNGEDRVEFEGAYPEKMFLEKLLSALS  107 (107)
T ss_dssp             EEETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EEeCCeEEEEEECCCCHHHHHHHHHHhhC
Confidence            99999999999999 99999999998763

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=3.3e-19  Score=141.51  Aligned_cols=90  Identities=21%  Similarity=0.383  Sum_probs=79.4

Q ss_pred             CCCCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchhHHHHHHHcCc
Q 018973          116 PRDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEKTKELCEREKI  193 (348)
Q Consensus       116 ~~~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~~~~l~~~~~V  193 (348)
                      +..+.|.++ +.++|+++++  +++.|+|+||++||++|+.+.|.|+++++.+.  ++.|++||+++   ..++|++|+|
T Consensus         7 ~~~s~v~~l-t~~~f~~~i~--~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~---~~~l~~~~~v   80 (119)
T d2b5ea4           7 PEDSAVVKL-ATDSFNEYIQ--SHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTE---NQDLCMEHNI   80 (119)
T ss_dssp             CTTSSCEEC-CTTTHHHHHT--TCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTT---CHHHHHHTTC
T ss_pred             CCCCccEEc-CHHHHHHHHh--cCCeEEEEEECCccCcccccchhhhhhhhhhcccceeeeeeeccc---hHHHHHHhcc
Confidence            344567777 8899999986  68899999999999999999999999999985  39999999998   5669999999


Q ss_pred             CCCCeEEEeecccccccc
Q 018973          194 KKVPHFSFYKSMEKIHEE  211 (348)
Q Consensus       194 ~~~Pt~~~~~~g~~v~~~  211 (348)
                      +++||+++|++|+.....
T Consensus        81 ~~~Pti~~f~~g~~~~~~   98 (119)
T d2b5ea4          81 PGFPSLKIFKNSDVNNSI   98 (119)
T ss_dssp             CSSSEEEEEETTCTTCEE
T ss_pred             ccCCeEEEEECCEEeeeE
Confidence            999999999999887654

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=2.9e-19  Score=144.24  Aligned_cols=103  Identities=16%  Similarity=0.176  Sum_probs=93.7

Q ss_pred             ChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCc-EEEEEEECCCchhHHHHHHhCCCCccceEEE
Q 018973          238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGT-VVFARMNGDENDSCMQFLRDMNVVEVPTFLF  316 (348)
Q Consensus       238 s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~  316 (348)
                      +.+++++++..+  .+++++|.||++||++|+.+.|.|.++++++++. +.+++||++++++   ++++|+|.++||+++
T Consensus        23 ~~~~~d~~~~~~--~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d~~~~---la~~~~V~~~PT~~~   97 (132)
T d2hfda1          23 SESRLDDWLTQA--PDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEA---IGDRFGVFRFPATLV   97 (132)
T ss_dssp             CHHHHHHHHHHC--SEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTSCEEEEEECHHHHHH---HHHHHTCCSCCEEEE
T ss_pred             ccccHHHHHHhC--CCcEEEEEeeCCCChhHHHHHHHHHHHHHHccCCcceeEEEEecCCHH---HHHhhccCcceeEEE
Confidence            567888888865  5678999999999999999999999999999775 7889999998887   999999999999999


Q ss_pred             EeCCeEEEEEeCC-ChHHHHHHHHHHhCCC
Q 018973          317 IRDGQIRGRYVGS-GKGELIGEILRYQGVR  345 (348)
Q Consensus       317 ~~~G~~v~~~~G~-~~~~L~~~l~~~~~~~  345 (348)
                      |++|+.++++.|. +.++|.++|+.++...
T Consensus        98 ~~~G~~v~~~~G~~~~~~l~~~i~~ll~~~  127 (132)
T d2hfda1          98 FTGGNYRGVLNGIHPWAELINLMRGLVEPQ  127 (132)
T ss_dssp             EETTEEEEEECCCSCHHHHHHHHHHHHSCS
T ss_pred             EEcCcEeeeecCCCCHHHHHHHHHHHhCcc
Confidence            9999999999999 9999999999887654

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=1.4e-18  Score=137.87  Aligned_cols=105  Identities=18%  Similarity=0.442  Sum_probs=90.8

Q ss_pred             cceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchhHHHHHHhCCCC
Q 018973          231 SAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDSCMQFLRDMNVV  309 (348)
Q Consensus       231 ~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~~~~l~~~~~V~  309 (348)
                      +.+.++ +.++|++++++    ++.++|+||++||++|+.+.|.|.++++.+.+ ++.|++||++++.+   ++++|+|.
T Consensus        10 s~v~~l-t~~~f~~~i~~----~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~~~~---l~~~~~v~   81 (119)
T d2b5ea4          10 SAVVKL-ATDSFNEYIQS----HDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQD---LCMEHNIP   81 (119)
T ss_dssp             SSCEEC-CTTTHHHHHTT----CSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHH---HHHHTTCC
T ss_pred             CccEEc-CHHHHHHHHhc----CCeEEEEEECCccCcccccchhhhhhhhhhcccceeeeeeeccchHH---HHHHhccc
Confidence            345555 55789998864    68999999999999999999999999999863 59999999999887   99999999


Q ss_pred             ccceEEEEeCCeEEE--EEeCC-ChHHHHHHHHHHhC
Q 018973          310 EVPTFLFIRDGQIRG--RYVGS-GKGELIGEILRYQG  343 (348)
Q Consensus       310 ~~PTl~~~~~G~~v~--~~~G~-~~~~L~~~l~~~~~  343 (348)
                      ++||+++|++|+...  .+.|. +.++|++||+++.+
T Consensus        82 ~~Pti~~f~~g~~~~~~~y~g~~~~~~l~~fi~k~~~  118 (119)
T d2b5ea4          82 GFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQ  118 (119)
T ss_dssp             SSSEEEEEETTCTTCEEECCSCCSHHHHHHHHHHHTS
T ss_pred             cCCeEEEEECCEEeeeEEecCCCCHHHHHHHHHHhhC
Confidence            999999999986554  45677 99999999999875

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=9.3e-20  Score=147.15  Aligned_cols=90  Identities=17%  Similarity=0.178  Sum_probs=82.5

Q ss_pred             eEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCCCchhHHHHHHHcCcCCCCeE
Q 018973          122 KKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGDESEKTKELCEREKIKKVPHF  199 (348)
Q Consensus       122 ~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~  199 (348)
                      ..+ +.++|++.+.++++++|+|+|||+||++|+.+.|.|++++++|++  +.+++||+|+   .++++++|+|+++||+
T Consensus        20 ~~~-~~~~~d~~~~~~~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d~---~~~la~~~~V~~~PT~   95 (132)
T d2hfda1          20 TPV-SESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQ---SEAIGDRFGVFRFPAT   95 (132)
T ss_dssp             EEE-CHHHHHHHHHHCSEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTSCEEEEEECHHH---HHHHHHHHTCCSCCEE
T ss_pred             ccc-ccccHHHHHHhCCCcEEEEEeeCCCChhHHHHHHHHHHHHHHccCCcceeEEEEecC---CHHHHHhhccCcceeE
Confidence            344 789999999988889999999999999999999999999999987  5788999888   7789999999999999


Q ss_pred             EEeeccccccccccCC
Q 018973          200 SFYKSMEKIHEEEGIG  215 (348)
Q Consensus       200 ~~~~~g~~v~~~~G~~  215 (348)
                      ++|++|+.+.++.|..
T Consensus        96 ~~~~~G~~v~~~~G~~  111 (132)
T d2hfda1          96 LVFTGGNYRGVLNGIH  111 (132)
T ss_dssp             EEEETTEEEEEECCCS
T ss_pred             EEEEcCcEeeeecCCC
Confidence            9999999999999954

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.76  E-value=2.4e-19  Score=142.27  Aligned_cols=100  Identities=18%  Similarity=0.231  Sum_probs=77.1

Q ss_pred             ChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchhHHHHHHhCCCCccceEEE
Q 018973          238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDSCMQFLRDMNVVEVPTFLF  316 (348)
Q Consensus       238 s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~  316 (348)
                      +..+++.++...  .++++++.||++||++|+.+.|.|.++++++++ ++.++.||++++++   ++++|+|+++||+++
T Consensus        17 ~~~~ld~~~~~~--~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~d~~~~---l~~~~~V~~~Pt~~~   91 (119)
T d2es7a1          17 EASTVDDWIKRV--GDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEA---IGDRFNVRRFPATLV   91 (119)
T ss_dssp             CCC--------C--CSEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHHHHHH---HHHTTTCCSSSEEEE
T ss_pred             cccCHHHHHHhC--CCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCCceEEEEEECCCCHH---HHHhcCcCcceEEEE
Confidence            556677777765  678999999999999999999999999999976 68999999998877   999999999999999


Q ss_pred             EeCCeEEEEEeCC-ChHHHHHHHHHHh
Q 018973          317 IRDGQIRGRYVGS-GKGELIGEILRYQ  342 (348)
Q Consensus       317 ~~~G~~v~~~~G~-~~~~L~~~l~~~~  342 (348)
                      |++|+.+.++.|. +.++|.++|++.+
T Consensus        92 ~~~G~~v~~~~G~~~~~~l~~~i~~lL  118 (119)
T d2es7a1          92 FTDGKLRGALSGIHPWAELLTLMRSIV  118 (119)
T ss_dssp             ESCC----CEESCCCHHHHHHHHHHHH
T ss_pred             EEcCeEEEEeeCCCCHHHHHHHHHHHh
Confidence            9999999999999 9999999999875

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.76  E-value=1.7e-19  Score=143.10  Aligned_cols=87  Identities=10%  Similarity=0.185  Sum_probs=65.9

Q ss_pred             CHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCCCchhHHHHHHHcCcCCCCeEEEee
Q 018973          126 SIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGDESEKTKELCEREKIKKVPHFSFYK  203 (348)
Q Consensus       126 s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~  203 (348)
                      +.+++++.+..+++++|+|.|||+||++|+.+.|.|++|+++|++  +.+++||+|+   .++++++|||+++||+++|+
T Consensus        17 ~~~~ld~~~~~~~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~d~---~~~l~~~~~V~~~Pt~~~~~   93 (119)
T d2es7a1          17 EASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQ---SEAIGDRFNVRRFPATLVFT   93 (119)
T ss_dssp             CCC--------CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHHH---HHHHHHTTTCCSSSEEEEES
T ss_pred             cccCHHHHHHhCCCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCCceEEEEEECCC---CHHHHHhcCcCcceEEEEEE
Confidence            788899999988899999999999999999999999999999987  7889999887   67799999999999999999


Q ss_pred             ccccccccccCC
Q 018973          204 SMEKIHEEEGIG  215 (348)
Q Consensus       204 ~g~~v~~~~G~~  215 (348)
                      +|+.+.++.|..
T Consensus        94 ~G~~v~~~~G~~  105 (119)
T d2es7a1          94 DGKLRGALSGIH  105 (119)
T ss_dssp             CC----CEESCC
T ss_pred             cCeEEEEeeCCC
Confidence            999999999953

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1e-18  Score=138.61  Aligned_cols=86  Identities=19%  Similarity=0.322  Sum_probs=75.4

Q ss_pred             CCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC----CcEEEEEeCCCchhHHHHHHHcCcC
Q 018973          119 ERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN----DVEFILVMGDESEKTKELCEREKIK  194 (348)
Q Consensus       119 ~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~----~v~f~~vd~d~~~~~~~l~~~~~V~  194 (348)
                      +.|..+ +.++|+++++  ++++|+|+|||+||++|+.+.|.|+++++++.    .+.+++||+++..   +++++|+|+
T Consensus         7 ~~V~~l-~~~~f~~~l~--~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~---~l~~~~~i~   80 (120)
T d1meka_           7 DHVLVL-RKSNFAEALA--AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEES---DLAQQYGVR   80 (120)
T ss_dssp             TTEEEC-CTTTHHHHHH--HCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCC---SSHHHHTCC
T ss_pred             CCeEEc-CHHHHHHHHh--cCCcEEEEEECCCcCCccccchhhhhhcccccccccceeeeccccccch---hHHHHhCCc
Confidence            345655 8899999998  58999999999999999999999999999874    3899999999854   599999999


Q ss_pred             CCCeEEEeeccccccc
Q 018973          195 KVPHFSFYKSMEKIHE  210 (348)
Q Consensus       195 ~~Pt~~~~~~g~~v~~  210 (348)
                      ++||+++|++|+.+..
T Consensus        81 ~~Pt~~~~~~G~~~~~   96 (120)
T d1meka_          81 GYPTIKFFRNGDTASP   96 (120)
T ss_dssp             SSSEEEEEESSCSSSC
T ss_pred             cCCeEEEEECCeEeee
Confidence            9999999999977653

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=2.8e-18  Score=136.03  Aligned_cols=104  Identities=19%  Similarity=0.196  Sum_probs=85.5

Q ss_pred             eecCChhhHHHHhhhcccCCcEEEEEEeCC-------CChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchh----HHHH
Q 018973          234 VQLHSKEDVEKLIDDHKVDQKLIVLDVGLK-------HCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDS----CMQF  302 (348)
Q Consensus       234 ~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~-------wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~----~~~l  302 (348)
                      +.+.+.++|.+.+.++  .+++++|+|||+       ||++|+.+.|.+.++++.+.+++.|+.||+++.+.    ...+
T Consensus         4 i~v~~~~e~~~~l~~~--~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~~~~~~~vdv~~~~~~~d~~~~l   81 (119)
T d1woua_           4 VSVSGFEEFHRAVEQH--NGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDF   81 (119)
T ss_dssp             EEEESHHHHHHHHHTT--TTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHH
T ss_pred             EEeCCHHHHHHHHHHc--CCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCCceEEEEEECCCCcccchhhhhH
Confidence            4567889999999876  688999999995       99999999999999999998889999999965332    1238


Q ss_pred             HHhCCCCccceEEEEeCCeEEEEEeCCChHHHHHHHH
Q 018973          303 LRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEIL  339 (348)
Q Consensus       303 ~~~~~V~~~PTl~~~~~G~~v~~~~G~~~~~L~~~l~  339 (348)
                      +++|+|.++||+++|++|+.+....+.+.+.+..+++
T Consensus        82 ~~~~~V~~iPT~i~~~~g~~l~~~~~~~~~ll~~~~~  118 (119)
T d1woua_          82 RKNLKVTAVPTLLKYGTPQKLVESECLQANLVEMLFS  118 (119)
T ss_dssp             HHHHCCCSSSEEEETTSSCEEEGGGGGCHHHHHHHHH
T ss_pred             HHhCCeEEEEEEEEEECCeEEeeeecCCHHHHHHHhc
Confidence            9999999999999999998766544446666665654

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.73  E-value=6.6e-18  Score=133.01  Aligned_cols=102  Identities=20%  Similarity=0.269  Sum_probs=85.6

Q ss_pred             eecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch-hHHHHHHhCCCCccc
Q 018973          234 VQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND-SCMQFLRDMNVVEVP  312 (348)
Q Consensus       234 ~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~-~~~~l~~~~~V~~~P  312 (348)
                      +...+.+++++.+.+    +++++|+||++||++|+.+.|.|.+++++++.++.++.++...+. ..++++++|+|.++|
T Consensus        11 ~~~~t~~~~~~~i~~----~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~V~~~P   86 (115)
T d1zmaa1          11 LEVTTVVRAQEALDK----KETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVP   86 (115)
T ss_dssp             SEECCHHHHHHHHHT----TCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCSSC
T ss_pred             eeeCCHHHHHHHHhc----CCCEEEEEcCCCCccHHHHHHHHHHHHHHhhhhhhhheeeccccccccccccccccccccc
Confidence            345577888888874    788999999999999999999999999999766666555433332 345699999999999


Q ss_pred             eEEEEeCCeEEEEEeCC-ChHHHHHHHH
Q 018973          313 TFLFIRDGQIRGRYVGS-GKGELIGEIL  339 (348)
Q Consensus       313 Tl~~~~~G~~v~~~~G~-~~~~L~~~l~  339 (348)
                      |+++|++|+++.++.|. ++++|.++|.
T Consensus        87 Tli~~~~gk~~~~~~G~~~~~el~~fla  114 (115)
T d1zmaa1          87 GFVHITDGQINVRCDSSMSAQEIKDFAG  114 (115)
T ss_dssp             EEEEEETTEEEEECCTTCCHHHHHHHHT
T ss_pred             EEEEEECCEEEEEEcCCCCHHHHHHHHc
Confidence            99999999999999999 9999999873

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.73  E-value=3.1e-18  Score=132.95  Aligned_cols=85  Identities=15%  Similarity=0.113  Sum_probs=70.8

Q ss_pred             HHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHH----cC-CcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEe
Q 018973          128 EEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQ----CN-DVEFILVMGDESEKTKELCEREKIKKVPHFSFY  202 (348)
Q Consensus       128 ~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~----~~-~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~  202 (348)
                      ++..+.+.+..++.+|+.|||+||+||+.+.|.+++++.+    +. .+.+..+|+++   .++++++|+|+++||++++
T Consensus         4 ~~~~e~~~~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~---~~~l~~~~~V~~vPTi~i~   80 (107)
T d1a8la2           4 DETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIE---YPEWADQYNVMAVPKIVIQ   80 (107)
T ss_dssp             HHHHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGG---CHHHHHHTTCCSSCEEEEE
T ss_pred             HHHHHHHHhcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEecccc---ccccccccccccceEEEEE
Confidence            4455556655566667789999999999999999999865    33 38999999998   5569999999999999999


Q ss_pred             eccccccccccCC
Q 018973          203 KSMEKIHEEEGIG  215 (348)
Q Consensus       203 ~~g~~v~~~~G~~  215 (348)
                      ++|+.+.++.|..
T Consensus        81 ~~G~~~~~~~G~~   93 (107)
T d1a8la2          81 VNGEDRVEFEGAY   93 (107)
T ss_dssp             ETTEEEEEEESCC
T ss_pred             eCCeEEEEEECCC
Confidence            9999999998854

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=2.3e-18  Score=136.56  Aligned_cols=105  Identities=18%  Similarity=0.410  Sum_probs=90.9

Q ss_pred             eeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhC---CcEEEEEEECCCchhHHHHHHhCCCC
Q 018973          233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMA---GTVVFARMNGDENDSCMQFLRDMNVV  309 (348)
Q Consensus       233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~---~~v~~~~vd~~~~~~~~~l~~~~~V~  309 (348)
                      +..+ +.++|++.++.    ++.++|+||++||++|+.+.|.+.++++.+.   .++.++.||++++..   ++++|+|.
T Consensus         9 V~~l-~~~~f~~~l~~----~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~---l~~~~~i~   80 (120)
T d1meka_           9 VLVL-RKSNFAEALAA----HKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESD---LAQQYGVR   80 (120)
T ss_dssp             EEEC-CTTTHHHHHHH----CSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCS---SHHHHTCC
T ss_pred             eEEc-CHHHHHHHHhc----CCcEEEEEECCCcCCccccchhhhhhcccccccccceeeeccccccchh---HHHHhCCc
Confidence            4444 56889988874    6899999999999999999999999999885   348999999999988   99999999


Q ss_pred             ccceEEEEeCCeEE--EEEeCC-ChHHHHHHHHHHhCCC
Q 018973          310 EVPTFLFIRDGQIR--GRYVGS-GKGELIGEILRYQGVR  345 (348)
Q Consensus       310 ~~PTl~~~~~G~~v--~~~~G~-~~~~L~~~l~~~~~~~  345 (348)
                      ++||+++|++|+.+  .++.|. +.++|.+||++.+|..
T Consensus        81 ~~Pt~~~~~~G~~~~~~~~~g~~~~~~l~~fi~~~~~p~  119 (120)
T d1meka_          81 GYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRTGPA  119 (120)
T ss_dssp             SSSEEEEEESSCSSSCEECCCCSSHHHHHHHHHTTSCCC
T ss_pred             cCCeEEEEECCeEeeeEEecCCCCHHHHHHHHHHhhCCC
Confidence            99999999998655  456788 9999999999998753

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.73  E-value=1.7e-18  Score=128.89  Aligned_cols=83  Identities=20%  Similarity=0.287  Sum_probs=75.9

Q ss_pred             CcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCC-Ch
Q 018973          253 QKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS-GK  331 (348)
Q Consensus       253 ~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~-~~  331 (348)
                      ++..+++|||+||++|+.+.|.+.++++++++.+.++.+|.+++++   ++++|+|.++||++++++|+    +.|. +.
T Consensus         2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~d~~~~---la~~~~V~~~Pt~~i~~~g~----~~G~~~~   74 (85)
T d1fo5a_           2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQ---KAMEYGIMAVPTIVINGDVE----FIGAPTK   74 (85)
T ss_dssp             CCEEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCC---TTTSTTTCCSSEEEETTEEE----CCSSSSS
T ss_pred             CceEEEEEECCCCcChHhhhhhcccccccccccccccccccccccc---ccccCCceEeeEEEEECCcE----EECCCCH
Confidence            4788999999999999999999999999998889999999999988   99999999999999888765    5688 99


Q ss_pred             HHHHHHHHHHh
Q 018973          332 GELIGEILRYQ  342 (348)
Q Consensus       332 ~~L~~~l~~~~  342 (348)
                      ++|.++|++++
T Consensus        75 ~~l~~~i~~~L   85 (85)
T d1fo5a_          75 EALVEAIKKRL   85 (85)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHhcC
Confidence            99999999874

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=1.6e-17  Score=130.94  Aligned_cols=94  Identities=14%  Similarity=0.257  Sum_probs=79.1

Q ss_pred             CceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHH---HHHHHHcCCcEEEEEeCCC-chhHHHHHHHcCcCC
Q 018973          120 RVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFM---VDLSRQCNDVEFILVMGDE-SEKTKELCEREKIKK  195 (348)
Q Consensus       120 ~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l---~~la~~~~~v~f~~vd~d~-~~~~~~l~~~~~V~~  195 (348)
                      ....|.+.++++..+.++++|+|+|+|||+||++|+.+.|.+   .++.+.+.++.++.+|++. .+...+++++|+|.+
T Consensus         3 ~f~~i~~~~~~~~~l~~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~   82 (117)
T d2fwha1           3 NFTQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLG   82 (117)
T ss_dssp             CCEECCSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCCHHHHHHHHHTTCCS
T ss_pred             CceEecCHHHHHHHHHHcCCCeEEEEEecccCCcccccchhHHhHHHHHHhccceEEEecccccchhHHHHHHhhhehhh
Confidence            467889999999999998999999999999999999999998   5666677788888998654 455678999999999


Q ss_pred             CCeEEEe-ecccccc--cccc
Q 018973          196 VPHFSFY-KSMEKIH--EEEG  213 (348)
Q Consensus       196 ~Pt~~~~-~~g~~v~--~~~G  213 (348)
                      +||+++| .+|+.+.  ++.|
T Consensus        83 ~Pt~~~~~~~G~~~~~~~~~G  103 (117)
T d2fwha1          83 LPTILFFDGQGQEHPQARVTG  103 (117)
T ss_dssp             SSEEEEECTTSCBCGGGCBCS
T ss_pred             ceEEEEEeCCCcEEecccccc
Confidence            9999999 4677664  3445

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.71  E-value=1.2e-17  Score=131.57  Aligned_cols=91  Identities=14%  Similarity=0.093  Sum_probs=77.3

Q ss_pred             eEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCC-chhHHHHHHHcCcCCCCeE
Q 018973          122 KKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDE-SEKTKELCEREKIKKVPHF  199 (348)
Q Consensus       122 ~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~-~~~~~~l~~~~~V~~~Pt~  199 (348)
                      .++.|.+++++++.  .+++++|+||++||++|+.+.|.|++++++++. +.++.+|..+ .+...+++++|+|+++||+
T Consensus        11 ~~~~t~~~~~~~i~--~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~V~~~PTl   88 (115)
T d1zmaa1          11 LEVTTVVRAQEALD--KKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVPGF   88 (115)
T ss_dssp             SEECCHHHHHHHHH--TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCSSCEE
T ss_pred             eeeCCHHHHHHHHh--cCCCEEEEEcCCCCccHHHHHHHHHHHHHHhhhhhhhheeecccccccccccccccccccccEE
Confidence            45669999999998  689999999999999999999999999999865 6666555333 2334679999999999999


Q ss_pred             EEeeccccccccccC
Q 018973          200 SFYKSMEKIHEEEGI  214 (348)
Q Consensus       200 ~~~~~g~~v~~~~G~  214 (348)
                      ++|++|+.+.++.|.
T Consensus        89 i~~~~gk~~~~~~G~  103 (115)
T d1zmaa1          89 VHITDGQINVRCDSS  103 (115)
T ss_dssp             EEEETTEEEEECCTT
T ss_pred             EEEECCEEEEEEcCC
Confidence            999999999988884

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.68  E-value=2.3e-17  Score=131.64  Aligned_cols=90  Identities=14%  Similarity=0.199  Sum_probs=74.3

Q ss_pred             CCCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHH------HHhhhhHHHHHHHHcC--CcEEEEEeCCCchhHHHHH
Q 018973          117 RDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLD------SSKIYPFMVDLSRQCN--DVEFILVMGDESEKTKELC  188 (348)
Q Consensus       117 ~~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~------C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~~~~l~  188 (348)
                      +.+.|+++ |.++|+++|+  +++.++|+|||+||++      |+.+.+.++.+++...  ++.|++||+++   .+++|
T Consensus         9 ~~~~V~~L-~~~nf~~~l~--~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~~---~~~l~   82 (124)
T d1a8ya1           9 GVDRVINV-NAKNYKNVFK--KYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEK---DAAVA   82 (124)
T ss_dssp             CCCCCEEC-CTTTHHHHHH--HCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETTT---SHHHH
T ss_pred             CCCccEEC-CHHHHHHHHH--hCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEeec---ccchh
Confidence            44567777 7999999998  5788999999999996      4556667777777654  49999999999   56699


Q ss_pred             HHcCcCCCCeEEEeecccccccccc
Q 018973          189 EREKIKKVPHFSFYKSMEKIHEEEG  213 (348)
Q Consensus       189 ~~~~V~~~Pt~~~~~~g~~v~~~~G  213 (348)
                      ++|+|+++||+++|++|+.+. +.|
T Consensus        83 ~~~~I~~yPTi~~f~~g~~~~-y~G  106 (124)
T d1a8ya1          83 KKLGLTEEDSIYVFKEDEVIE-YDG  106 (124)
T ss_dssp             HTTTCCSTTCEEEEESSSEEE-CCS
T ss_pred             hccccccCCcEEEeccCccEE-eeC
Confidence            999999999999999998774 555

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=2.1e-17  Score=144.43  Aligned_cols=96  Identities=18%  Similarity=0.189  Sum_probs=86.0

Q ss_pred             CCCCCceEecCHHHHHHHHHhcC-CCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcC
Q 018973          116 PRDERVKKVHSIEEFDEALRLAK-NKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIK  194 (348)
Q Consensus       116 ~~~~~v~~v~s~~~f~~~l~~~~-~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~  194 (348)
                      ...+.|.+|.+.++|.+.+.+.. +.+|||+||++||++|+.+.|.|.+|+++|++++|++||+++.+    +..+|+|+
T Consensus        96 ~~~G~v~~i~~~~~f~~~v~~~~~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~~vkF~ki~~~~~~----~~~~~~i~  171 (217)
T d2trcp_          96 PRYGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKIRASNTG----AGDRFSSD  171 (217)
T ss_dssp             CCCCSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCTTSEEEEEEHHHHT----CSTTSCGG
T ss_pred             ccCCeEEEcCCHHHHHHHHHhcCCCCeEEEEEEcCCCCChhhhhhhHHHHhhhcccceEEEEccccch----hHHhCCCC
Confidence            34688999999999999987654 67999999999999999999999999999999999999988633    45799999


Q ss_pred             CCCeEEEeeccccccccccCC
Q 018973          195 KVPHFSFYKSMEKIHEEEGIG  215 (348)
Q Consensus       195 ~~Pt~~~~~~g~~v~~~~G~~  215 (348)
                      ++|||++|++|+.+++++|..
T Consensus       172 ~lPtl~~yk~G~~v~~~vg~~  192 (217)
T d2trcp_         172 VLPTLLVYKGGELISNFISVA  192 (217)
T ss_dssp             GCSEEEEEETTEEEEEETTGG
T ss_pred             CCCeEEEEECCEEEEEEECcc
Confidence            999999999999999998853

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.67  E-value=1.8e-17  Score=123.18  Aligned_cols=66  Identities=15%  Similarity=0.135  Sum_probs=60.2

Q ss_pred             CCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeecccc
Q 018973          139 NKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEK  207 (348)
Q Consensus       139 ~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~~  207 (348)
                      +|..|++|||+||+||+.+.|.++++++++++ +.++.+|+|+.+   +++++|||+++||++++++|+.
T Consensus         2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~d~~~---~la~~~~V~~~Pt~~i~~~g~~   68 (85)
T d1fo5a_           2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENP---QKAMEYGIMAVPTIVINGDVEF   68 (85)
T ss_dssp             CCEEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSC---CTTTSTTTCCSSEEEETTEEEC
T ss_pred             CceEEEEEECCCCcChHhhhhhccccccccccccccccccccccc---cccccCCceEeeEEEEECCcEE
Confidence            57889999999999999999999999999986 899999999844   5999999999999999988763

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.67  E-value=1.4e-16  Score=121.16  Aligned_cols=77  Identities=6%  Similarity=0.077  Sum_probs=69.0

Q ss_pred             HHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeeccc
Q 018973          127 IEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSME  206 (348)
Q Consensus       127 ~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~  206 (348)
                      .+++.+.+++..+...++.|+++||++|+.+.|.|++++++++++.|..+|+++   .++++++|||+++||+++  +|+
T Consensus         3 ~~~~~e~ik~l~~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~~~i~~~~vd~~~---~~~l~~~~~I~~vPt~~~--ng~   77 (96)
T d1hyua4           3 AQSLLEQIRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNPRIKHTAIDGGT---FQNEITERNVMGVPAVFV--NGK   77 (96)
T ss_dssp             CHHHHHHHHHCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCTTEEEEEEETTT---CHHHHHHTTCCSSSEEEE--TTE
T ss_pred             hHHHHHHHHhcCCCeEEEEEECCCCcchHHHHHHHHHHHHhCCceEEEEEeccc---chHHHhhcccccccEEEE--CCE
Confidence            467788888777888899999999999999999999999999999999999999   556999999999999854  887


Q ss_pred             cc
Q 018973          207 KI  208 (348)
Q Consensus       207 ~v  208 (348)
                      .+
T Consensus        78 ~~   79 (96)
T d1hyua4          78 EF   79 (96)
T ss_dssp             EE
T ss_pred             EE
Confidence            66

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.66  E-value=3.9e-17  Score=121.43  Aligned_cols=80  Identities=15%  Similarity=0.232  Sum_probs=71.7

Q ss_pred             EEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCC-ChHHH
Q 018973          256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS-GKGEL  334 (348)
Q Consensus       256 vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~-~~~~L  334 (348)
                      .+..||++||++|+.+.|.++++++++++++.++.+|++++++   ++++|+|.++||+++  +|+  .++.|. +.++|
T Consensus         4 ~v~~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~---l~~~~~V~~~Pt~~~--~~~--~~~~G~~~~~~l   76 (85)
T d1nhoa_           4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDRE---KAIEYGLMAVPAIAI--NGV--VRFVGAPSREEL   76 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGG---GGGGTCSSCSSEEEE--TTT--EEEECSSCCHHH
T ss_pred             EEEEEECCCCcchHHHHHHHhhhcccccccccccccccccchh---hHHhcCceEeCEEEE--CCc--EEEEcCCCHHHH
Confidence            3566999999999999999999999998889999999999998   999999999999877  444  356788 99999


Q ss_pred             HHHHHHHh
Q 018973          335 IGEILRYQ  342 (348)
Q Consensus       335 ~~~l~~~~  342 (348)
                      .++|++++
T Consensus        77 ~~~i~~~l   84 (85)
T d1nhoa_          77 FEAINDEM   84 (85)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhh
Confidence            99999875

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=2.5e-16  Score=123.96  Aligned_cols=105  Identities=20%  Similarity=0.372  Sum_probs=85.6

Q ss_pred             eeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHH---HHHHHHhCCcEEEEEEECCCc-hhHHHHHHhCCC
Q 018973          233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTV---IKLSRQMAGTVVFARMNGDEN-DSCMQFLRDMNV  308 (348)
Q Consensus       233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~~~~-~~~~~l~~~~~V  308 (348)
                      ...+.+.++++..+.++  .+++++|+||++||++|+.+.|.+   .++.+.+. ++.++.+|++.+ +...+++++|+|
T Consensus         4 f~~i~~~~~~~~~l~~~--~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~v   80 (117)
T d2fwha1           4 FTQIKTVDELNQALVEA--KGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA-DTVLLQANVTANDAQDVALLKHLNV   80 (117)
T ss_dssp             CEECCSHHHHHHHHHHH--TTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT-TSEEEEEECTTCCHHHHHHHHHTTC
T ss_pred             ceEecCHHHHHHHHHHc--CCCeEEEEEecccCCcccccchhHHhHHHHHHhcc-ceEEEecccccchhHHHHHHhhheh
Confidence            45677888999888776  689999999999999999999987   55555554 477788887544 345679999999


Q ss_pred             CccceEEEE-eCCeEE--EEEeCC-ChHHHHHHHHH
Q 018973          309 VEVPTFLFI-RDGQIR--GRYVGS-GKGELIGEILR  340 (348)
Q Consensus       309 ~~~PTl~~~-~~G~~v--~~~~G~-~~~~L~~~l~~  340 (348)
                      .++||+++| .+|+++  .++.|. ++++|.++|++
T Consensus        81 ~~~Pt~~~~~~~G~~~~~~~~~G~~~~~~~~~~l~~  116 (117)
T d2fwha1          81 LGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRD  116 (117)
T ss_dssp             CSSSEEEEECTTSCBCGGGCBCSCCCHHHHHHHHHH
T ss_pred             hhceEEEEEeCCCcEEecccccccCCHHHHHHHHhc
Confidence            999999999 589876  467898 99999999875

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.66  E-value=2.4e-17  Score=134.19  Aligned_cols=87  Identities=18%  Similarity=0.175  Sum_probs=73.5

Q ss_pred             CCCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC----cEEEEEeCCCchhHHHHHHHcC
Q 018973          117 RDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND----VEFILVMGDESEKTKELCEREK  192 (348)
Q Consensus       117 ~~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~----v~f~~vd~d~~~~~~~l~~~~~  192 (348)
                      ..+.|.++ +.++|++.+.+ .+++|+|+|||+||++|+.+.|.|+++++.|.+    +.++.+|.+.     ++|++|+
T Consensus        10 ~~~~V~~l-~~~nf~~~v~~-~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~~~-----~~~~~~~   82 (140)
T d2b5ea1          10 QDSSVFQL-VGKNHDEIVND-PKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTE-----NDVRGVV   82 (140)
T ss_dssp             CSCSEEEE-CTTTHHHHHHC-TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGG-----CCCSSCC
T ss_pred             CCCCcEEe-cCcCHHHHHhc-CCCCEEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEeeeccc-----hhccccc
Confidence            45678888 89999999864 578999999999999999999999999998753    6666666544     3789999


Q ss_pred             cCCCCeEEEeeccccccc
Q 018973          193 IKKVPHFSFYKSMEKIHE  210 (348)
Q Consensus       193 V~~~Pt~~~~~~g~~v~~  210 (348)
                      |+++||+++|++|+....
T Consensus        83 v~~~Ptl~~f~~g~~~~~  100 (140)
T d2b5ea1          83 IEGYPTIVLYPGGKKSES  100 (140)
T ss_dssp             CSSSSEEEEECCTTSCCC
T ss_pred             cccCCeEEEEECCEEcce
Confidence            999999999999987654

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=99.64  E-value=1.2e-17  Score=131.47  Aligned_cols=86  Identities=16%  Similarity=0.196  Sum_probs=67.1

Q ss_pred             CCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC---cEEEEEeCCCchhHHHHHHHcCcCC
Q 018973          119 ERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND---VEFILVMGDESEKTKELCEREKIKK  195 (348)
Q Consensus       119 ~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~---v~f~~vd~d~~~~~~~l~~~~~V~~  195 (348)
                      +.|+.+ +.++|++.+.+ .+++|+|+|||+||++|+++.|.|+++++.+.+   ..++.++.++..   .++.+++|++
T Consensus         2 g~V~~l-t~~nF~~~v~~-~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~   76 (116)
T d2djja1           2 GPVTVV-VAKNYNEIVLD-DTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDAT---ANDVPDEIQG   76 (116)
T ss_dssp             CSSEEC-CTTTTTTSSSC-TTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETT---TSCCSSCCSS
T ss_pred             cCcEEc-ccCCHHHHHhc-CCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEecccc---hhhhcccccC
Confidence            566666 89999987643 588999999999999999999999999998864   223344433322   2567899999


Q ss_pred             CCeEEEeecccccc
Q 018973          196 VPHFSFYKSMEKIH  209 (348)
Q Consensus       196 ~Pt~~~~~~g~~v~  209 (348)
                      +||+++|++|+...
T Consensus        77 ~Pti~~f~~g~~~~   90 (116)
T d2djja1          77 FPTIKLYPAGAKGQ   90 (116)
T ss_dssp             SSEEEEECSSCTTS
T ss_pred             CCEEEEEECCccCc
Confidence            99999999887543

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.64  E-value=1.5e-15  Score=115.37  Aligned_cols=90  Identities=16%  Similarity=0.223  Sum_probs=76.5

Q ss_pred             hhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeC
Q 018973          240 EDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRD  319 (348)
Q Consensus       240 ~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~  319 (348)
                      +++.+.++..  ++...++.|+++||++|+.+.|.+++++..++ ++.+..+|++++++   ++++|+|.++||+++  +
T Consensus         4 ~~~~e~ik~l--~~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~~-~i~~~~vd~~~~~~---l~~~~~I~~vPt~~~--n   75 (96)
T d1hyua4           4 QSLLEQIRDI--DGDFEFETYYSLSCHNCPDVVQALNLMAVLNP-RIKHTAIDGGTFQN---EITERNVMGVPAVFV--N   75 (96)
T ss_dssp             HHHHHHHHHC--CSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT-TEEEEEEETTTCHH---HHHHTTCCSSSEEEE--T
T ss_pred             HHHHHHHHhc--CCCeEEEEEECCCCcchHHHHHHHHHHHHhCC-ceEEEEEecccchH---HHhhcccccccEEEE--C
Confidence            4555566654  46678888999999999999999999998874 59999999999998   999999999999855  8


Q ss_pred             CeEEEEEeCC-ChHHHHHHHH
Q 018973          320 GQIRGRYVGS-GKGELIGEIL  339 (348)
Q Consensus       320 G~~v~~~~G~-~~~~L~~~l~  339 (348)
                      |+.+  +.|. +.++|+++|+
T Consensus        76 g~~~--~~G~~~~~~l~~~le   94 (96)
T d1hyua4          76 GKEF--GQGRMTLTEIVAKVD   94 (96)
T ss_dssp             TEEE--EESCCCHHHHHHHHC
T ss_pred             CEEE--EecCCCHHHHHHHHh
Confidence            9876  5688 9999998874

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.64  E-value=1.8e-16  Score=125.95  Aligned_cols=84  Identities=17%  Similarity=0.229  Sum_probs=70.6

Q ss_pred             ceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHc----CCcEEEEEeCCCc--hhHHHHHHHcCc-
Q 018973          121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQC----NDVEFILVMGDES--EKTKELCEREKI-  193 (348)
Q Consensus       121 v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~----~~v~f~~vd~d~~--~~~~~l~~~~~V-  193 (348)
                      ++++ +.++|++.+.  +++.|||+|||+||++|+  .|.|++++++.    .++.+++||+++.  .+.+++|++|+| 
T Consensus         4 ~v~L-~~~nFd~~v~--~~~~~lV~Fya~wC~~ck--~p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~~i~   78 (122)
T d2c0ga2           4 CVDL-DELSFEKTVE--RFPYSVVKFDIASPYGEK--HEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVD   78 (122)
T ss_dssp             CEEC-CTTTHHHHHT--TSSEEEEEEEESSCCSHH--HHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCC
T ss_pred             eEEc-ChHhHHHHHh--cCCcEEEEEECCCCCccc--CHHHHHHHHHHHHhCCCeEEEeccccccccccCHHHHHHhhcc
Confidence            5566 8899999997  689999999999999999  49999998864    4589999998753  345789999998 


Q ss_pred             -CCCCeEEEeecccccc
Q 018973          194 -KKVPHFSFYKSMEKIH  209 (348)
Q Consensus       194 -~~~Pt~~~~~~g~~v~  209 (348)
                       +++||+++|++|+...
T Consensus        79 ~~~~PTi~~f~~g~~~~   95 (122)
T d2c0ga2          79 DKNFPSIFLFKGNADEY   95 (122)
T ss_dssp             TTSCCEEEEESSSSSSE
T ss_pred             cCCCCcEEEEeCCcccc
Confidence             5799999999887554

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.64  E-value=1.2e-15  Score=121.50  Aligned_cols=103  Identities=9%  Similarity=0.168  Sum_probs=84.9

Q ss_pred             ceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChh------hhhhhhHHHHHHHHhCC-cEEEEEEECCCchhHHHHHH
Q 018973          232 AVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGP------CVKVYPTVIKLSRQMAG-TVVFARMNGDENDSCMQFLR  304 (348)
Q Consensus       232 ~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~------C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~~~~l~~  304 (348)
                      .+..+ +.++|++++++    ++.++|+||+|||++      |..+.+.+..+++.+.+ .+.|++||++++.+   +++
T Consensus        12 ~V~~L-~~~nf~~~l~~----~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~~~~~---l~~   83 (124)
T d1a8ya1          12 RVINV-NAKNYKNVFKK----YEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAA---VAK   83 (124)
T ss_dssp             CCEEC-CTTTHHHHHHH----CSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETTTSHH---HHH
T ss_pred             ccEEC-CHHHHHHHHHh----CCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEeecccc---hhh
Confidence            45555 46889999985    478999999999985      44555566666666543 39999999999988   999


Q ss_pred             hCCCCccceEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973          305 DMNVVEVPTFLFIRDGQIRGRYVGS-GKGELIGEILRYQG  343 (348)
Q Consensus       305 ~~~V~~~PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~  343 (348)
                      +|+|+++||+++|++|+.+ .+.|. +.+.|.+||.+.+.
T Consensus        84 ~~~I~~yPTi~~f~~g~~~-~y~G~r~~~~l~~fi~~~l~  122 (124)
T d1a8ya1          84 KLGLTEEDSIYVFKEDEVI-EYDGEFSADTLVEFLLDVLE  122 (124)
T ss_dssp             TTTCCSTTCEEEEESSSEE-ECCSCCSHHHHHHHHHHHHS
T ss_pred             ccccccCCcEEEeccCccE-EeeCCCCHHHHHHHHHHhcC
Confidence            9999999999999999886 57888 99999999998764

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.63  E-value=6.6e-17  Score=131.59  Aligned_cols=107  Identities=24%  Similarity=0.388  Sum_probs=87.0

Q ss_pred             cceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC---cEEEEEEECCCchhHHHHHHhCC
Q 018973          231 SAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG---TVVFARMNGDENDSCMQFLRDMN  307 (348)
Q Consensus       231 ~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~---~v~~~~vd~~~~~~~~~l~~~~~  307 (348)
                      +.+..+ +.++|++.+.+   .+++++|+||++||++|+.+.|.|.++++.+.+   .+.++.+|.+.  +   ++++|+
T Consensus        12 ~~V~~l-~~~nf~~~v~~---~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~~~--~---~~~~~~   82 (140)
T d2b5ea1          12 SSVFQL-VGKNHDEIVND---PKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTE--N---DVRGVV   82 (140)
T ss_dssp             CSEEEE-CTTTHHHHHHC---TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGG--C---CCSSCC
T ss_pred             CCcEEe-cCcCHHHHHhc---CCCCEEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEeeeccc--h---hccccc
Confidence            456666 56888988865   368899999999999999999999999988743   36677776644  4   788999


Q ss_pred             CCccceEEEEeCCeEEEE--EeCC-ChHHHHHHHHHHhCCCC
Q 018973          308 VVEVPTFLFIRDGQIRGR--YVGS-GKGELIGEILRYQGVRV  346 (348)
Q Consensus       308 V~~~PTl~~~~~G~~v~~--~~G~-~~~~L~~~l~~~~~~~~  346 (348)
                      |.++||+++|++|+....  +.|. +.+.|.+||.++.+..+
T Consensus        83 v~~~Ptl~~f~~g~~~~~~~y~G~~t~~~l~~fi~~~~~~~~  124 (140)
T d2b5ea1          83 IEGYPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKENGHFDV  124 (140)
T ss_dssp             CSSSSEEEEECCTTSCCCCBCCSCCCHHHHHHHHHHHCTTCC
T ss_pred             cccCCeEEEEECCEEcceeEeCCCCCHHHHHHHHHHcCCCCC
Confidence            999999999999876643  5688 99999999999876554

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.59  E-value=3.5e-15  Score=118.37  Aligned_cols=107  Identities=9%  Similarity=0.060  Sum_probs=84.3

Q ss_pred             eeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHh---CCcEEEEEEECCCch--hHHHHHHhCC
Q 018973          233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQM---AGTVVFARMNGDEND--SCMQFLRDMN  307 (348)
Q Consensus       233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~---~~~v~~~~vd~~~~~--~~~~l~~~~~  307 (348)
                      ++++ +.++|++++.+    .+.++|.||++||++|++  |.|.++++.+   .+.+.++.||+++..  +.++++++|+
T Consensus         4 ~v~L-~~~nFd~~v~~----~~~~lV~Fya~wC~~ck~--p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~~   76 (122)
T d2c0ga2           4 CVDL-DELSFEKTVER----FPYSVVKFDIASPYGEKH--EAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYK   76 (122)
T ss_dssp             CEEC-CTTTHHHHHTT----SSEEEEEEEESSCCSHHH--HHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTT
T ss_pred             eEEc-ChHhHHHHHhc----CCcEEEEEECCCCCcccC--HHHHHHHHHHHHhCCCeEEEeccccccccccCHHHHHHhh
Confidence            3444 55779999974    589999999999999994  8999998876   345999999986532  2345999998


Q ss_pred             C--CccceEEEEeCCeEEE---EEeCC-ChHHHHHHHHHHhCCCC
Q 018973          308 V--VEVPTFLFIRDGQIRG---RYVGS-GKGELIGEILRYQGVRV  346 (348)
Q Consensus       308 V--~~~PTl~~~~~G~~v~---~~~G~-~~~~L~~~l~~~~~~~~  346 (348)
                      |  .++||+++|++|+...   .+.|. +.++|.+||+++.|+.+
T Consensus        77 i~~~~~PTi~~f~~g~~~~~~~~~~g~rt~~~l~~fv~~~~~~~~  121 (122)
T d2c0ga2          77 VDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSANTPLYI  121 (122)
T ss_dssp             CCTTSCCEEEEESSSSSSEEECCTTSCCCHHHHHHHHHHHSSCCC
T ss_pred             cccCCCCcEEEEeCCcccccccccCCCCCHHHHHHHHHHhcCccc
Confidence            8  5799999998875332   34566 89999999999988653

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=99.58  E-value=4.6e-16  Score=122.12  Aligned_cols=100  Identities=21%  Similarity=0.293  Sum_probs=79.7

Q ss_pred             ChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCc-----EEEEEEECCCchhHHHHHHhCCCCccc
Q 018973          238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGT-----VVFARMNGDENDSCMQFLRDMNVVEVP  312 (348)
Q Consensus       238 s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~-----v~~~~vd~~~~~~~~~l~~~~~V~~~P  312 (348)
                      +.++|++.+.+   ++++++|+||++||++|+++.|.|+++++.+.+.     +.+...+.+.      ++.+++|.++|
T Consensus         8 t~~nF~~~v~~---~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~P   78 (116)
T d2djja1           8 VAKNYNEIVLD---DTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATA------NDVPDEIQGFP   78 (116)
T ss_dssp             CTTTTTTSSSC---TTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTT------SCCSSCCSSSS
T ss_pred             ccCCHHHHHhc---CCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEecccch------hhhcccccCCC
Confidence            46778877654   4789999999999999999999999999998542     4455555554      44578999999


Q ss_pred             eEEEEeCCeEE--EEEeCC-ChHHHHHHHHHHhCCCC
Q 018973          313 TFLFIRDGQIR--GRYVGS-GKGELIGEILRYQGVRV  346 (348)
Q Consensus       313 Tl~~~~~G~~v--~~~~G~-~~~~L~~~l~~~~~~~~  346 (348)
                      |+++|++|+..  ..+.|. +.++|.++|+++...+.
T Consensus        79 ti~~f~~g~~~~~~~~~g~~~~~~l~~fi~~~~~~k~  115 (116)
T d2djja1          79 TIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGKYKA  115 (116)
T ss_dssp             EEEEECSSCTTSCCCCCCCSCHHHHHHHHHHTSSSCC
T ss_pred             EEEEEECCccCceEEecCCCCHHHHHHHHHHccCcCC
Confidence            99999887633  356788 99999999999876654

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.57  E-value=4e-16  Score=115.83  Aligned_cols=60  Identities=8%  Similarity=0.052  Sum_probs=53.2

Q ss_pred             EEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeec
Q 018973          142 VVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPHFSFYKS  204 (348)
Q Consensus       142 vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~  204 (348)
                      .|+.|||+||+||+++.|.|++++++|++ +.|+++|+|+.   ++++++|||+++||++++..
T Consensus         4 ~v~~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~---~~l~~~~~V~~~Pt~~~~~~   64 (85)
T d1nhoa_           4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVD---REKAIEYGLMAVPAIAINGV   64 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTC---GGGGGGTCSSCSSEEEETTT
T ss_pred             EEEEEECCCCcchHHHHHHHhhhcccccccccccccccccc---hhhHHhcCceEeCEEEECCc
Confidence            35669999999999999999999999986 99999999994   45999999999999877433

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=7.4e-15  Score=128.00  Aligned_cols=106  Identities=14%  Similarity=0.219  Sum_probs=89.6

Q ss_pred             ccceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCC
Q 018973          230 HSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVV  309 (348)
Q Consensus       230 ~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~  309 (348)
                      ...+..+.+.++|.+.+... ..+..|||+||++||++|+.+.+.|.+|+.+|++ ++|++||+++.+    +..+|+|.
T Consensus        98 ~G~v~~i~~~~~f~~~v~~~-~~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~~-vkF~ki~~~~~~----~~~~~~i~  171 (217)
T d2trcp_          98 YGFVYELETGEQFLETIEKE-QKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPM-VKFCKIRASNTG----AGDRFSSD  171 (217)
T ss_dssp             CCSEEECCSHHHHHHHHHHS-CTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCTT-SEEEEEEHHHHT----CSTTSCGG
T ss_pred             CCeEEEcCCHHHHHHHHHhc-CCCCeEEEEEEcCCCCChhhhhhhHHHHhhhccc-ceEEEEccccch----hHHhCCCC
Confidence            34577788888888888653 2456899999999999999999999999999965 999999988655    56789999


Q ss_pred             ccceEEEEeCCeEEEEEeCC--------ChHHHHHHHHHH
Q 018973          310 EVPTFLFIRDGQIRGRYVGS--------GKGELIGEILRY  341 (348)
Q Consensus       310 ~~PTl~~~~~G~~v~~~~G~--------~~~~L~~~l~~~  341 (348)
                      ++|||++|++|+.+++++|.        +.++|..+|.++
T Consensus       172 ~lPtl~~yk~G~~v~~~vg~~~~~g~~~~~~~lE~~L~~~  211 (217)
T d2trcp_         172 VLPTLLVYKGGELISNFISVAEQFAEDFFAADVESFLNEY  211 (217)
T ss_dssp             GCSEEEEEETTEEEEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred             CCCeEEEEECCEEEEEEECccccccccCCHHHHHHHHHHc
Confidence            99999999999999999885        357788877765

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=1.1e-13  Score=111.38  Aligned_cols=88  Identities=23%  Similarity=0.170  Sum_probs=66.7

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchh--------------------HHHHHHhCCCCcc
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDS--------------------CMQFLRDMNVVEV  311 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~--------------------~~~l~~~~~V~~~  311 (348)
                      .+++++|+|||+||++|+...|.|.++.+..   +.++.++.+....                    ...+.+.|++.++
T Consensus        19 ~Gk~vvl~FwatWC~pC~~e~p~l~~~~~~~---~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~   95 (136)
T d1z5ye1          19 QGKPVLLNVWATWCPTSRAEHQYLNQLSAQG---IRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGA   95 (136)
T ss_dssp             SSSCEEEEEECTTCHHHHHHHHHHHHHHHTT---CCEEEEEESCCHHHHHHHHHHHCCCCSEEEEESSCHHHHHHTCCSB
T ss_pred             CCCEEEEEEEcCcCCCcCccccchhhhhhhh---hhhcccccccchhhhHHHHHHcCCccceeecccchhHHHhcccCCc
Confidence            4899999999999999999999999987652   4455555443211                    0126677999999


Q ss_pred             ceE-EEEeCCeEEEEEeCC-ChHHHHHHHHHHh
Q 018973          312 PTF-LFIRDGQIRGRYVGS-GKGELIGEILRYQ  342 (348)
Q Consensus       312 PTl-~~~~~G~~v~~~~G~-~~~~L~~~l~~~~  342 (348)
                      ||. ++.++|+++.++.|. +++++.+.|++++
T Consensus        96 P~~~liD~~G~i~~~~~G~~~~~~l~~~i~~ll  128 (136)
T d1z5ye1          96 PETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLW  128 (136)
T ss_dssp             SEEEEECTTSCEEEEEESCCCHHHHHHHTHHHH
T ss_pred             ceEEEEcCCCEEEEEEEcCCCHHHHHHHHHHHH
Confidence            965 555899999999998 8887777766653

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.39  E-value=5.8e-13  Score=108.39  Aligned_cols=73  Identities=23%  Similarity=0.251  Sum_probs=59.4

Q ss_pred             cCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC---CcEEEEEeCCCch---------------------hHHHHHHHcC
Q 018973          137 AKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN---DVEFILVMGDESE---------------------KTKELCEREK  192 (348)
Q Consensus       137 ~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~---~v~f~~vd~d~~~---------------------~~~~l~~~~~  192 (348)
                      .++|+|+|+|||+||+||+...|.|.+++++|.   ++.++.|+.|+..                     ....+.+.|+
T Consensus        26 l~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~y~  105 (144)
T d1i5ga_          26 LAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFD  105 (144)
T ss_dssp             GTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTT
T ss_pred             cCCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccHHHHHHHHHhCCCCceeeEChHHHHHHHHHCC
Confidence            379999999999999999999999999999885   3788888888642                     1135788999


Q ss_pred             cCCCCeEEEee-c-ccccc
Q 018973          193 IKKVPHFSFYK-S-MEKIH  209 (348)
Q Consensus       193 V~~~Pt~~~~~-~-g~~v~  209 (348)
                      |.++||++++. + |+.+.
T Consensus       106 v~~iPt~~lid~~~G~vi~  124 (144)
T d1i5ga_         106 VKSIPTLVGVEADSGNIIT  124 (144)
T ss_dssp             CCSSSEEEEEETTTCCEEE
T ss_pred             CCCcCEEEEEeCCCCEEEe
Confidence            99999987774 4 56553

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=99.38  E-value=6.1e-13  Score=108.12  Aligned_cols=74  Identities=20%  Similarity=0.267  Sum_probs=61.0

Q ss_pred             cCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC---CcEEEEEeCCCch---------------------hHHHHHHHcC
Q 018973          137 AKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN---DVEFILVMGDESE---------------------KTKELCEREK  192 (348)
Q Consensus       137 ~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~---~v~f~~vd~d~~~---------------------~~~~l~~~~~  192 (348)
                      .++|+|+|+|||+||+||+...|.|.+++++|.   ++.++.|+.|+..                     ...++.+.|+
T Consensus        26 ~~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~  105 (144)
T d1o73a_          26 LVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFG  105 (144)
T ss_dssp             GTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHT
T ss_pred             hCCCEEEEEeChhhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhHHHHHHHHHhccccceeeeccchHHHHHHHcC
Confidence            379999999999999999999999999999884   3888999887642                     1235889999


Q ss_pred             cCCCCeEEEee-c-cccccc
Q 018973          193 IKKVPHFSFYK-S-MEKIHE  210 (348)
Q Consensus       193 V~~~Pt~~~~~-~-g~~v~~  210 (348)
                      |+++||++++. + |+.+.+
T Consensus       106 v~~~Pt~~lID~~~G~Ii~~  125 (144)
T d1o73a_         106 VESIPTLITINADTGAIIGT  125 (144)
T ss_dssp             CCSSSEEEEEETTTCCEEES
T ss_pred             CCcCCEEEEEECCCCEEEee
Confidence            99999988775 4 666654

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.37  E-value=1e-12  Score=106.71  Aligned_cols=91  Identities=20%  Similarity=0.284  Sum_probs=68.6

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchh------------------HHHHHHhCCCCccce
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDS------------------CMQFLRDMNVVEVPT  313 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~------------------~~~l~~~~~V~~~PT  313 (348)
                      ++|+++|+||++||++|+.+.|.+.++.+.++..+..+.++......                  ..++.+.|++.++||
T Consensus        30 kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~  109 (144)
T d1knga_          30 KGKVSLVNVWASWCVPCHDEAPLLTELGKDKRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGVPE  109 (144)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHTTCTTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSSCE
T ss_pred             CCCEEEEEeeccccccccccCchhhhhhhccCceeEEEEeeechHHHHHHHHHcCCccccccccccchhhhhcCccccce
Confidence            57999999999999999999999999987765434333333221100                  113777899999997


Q ss_pred             EEEE-eCCeEEEEEeCC-ChHHHHHHHHHHh
Q 018973          314 FLFI-RDGQIRGRYVGS-GKGELIGEILRYQ  342 (348)
Q Consensus       314 l~~~-~~G~~v~~~~G~-~~~~L~~~l~~~~  342 (348)
                      ++++ ++|+++.++.|. +.++|.+.|++.+
T Consensus       110 ~~liD~~G~i~~~~~G~~~~~~l~~~i~~~l  140 (144)
T d1knga_         110 TFVVGREGTIVYKLVGPITPDNLRSVLLPQM  140 (144)
T ss_dssp             EEEECTTSBEEEEEESCCCHHHHHHTHHHHH
T ss_pred             EEEEcCCCeEEEEEeCCCCHHHHHHHHHHHH
Confidence            6555 799999999999 8888888777653

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=99.37  E-value=1.9e-12  Score=104.88  Aligned_cols=90  Identities=16%  Similarity=0.258  Sum_probs=73.6

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch------hHH------------------HHHHhCC
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND------SCM------------------QFLRDMN  307 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~------~~~------------------~l~~~~~  307 (348)
                      .+++++|+||++||++|+...|.+.++.+++++++.++.++.+..+      ..+                  .+.+.|+
T Consensus        28 ~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~~  107 (143)
T d2b5xa1          28 GEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAFE  107 (143)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHHHHTC
T ss_pred             CCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhccccceeEEeeccccccchhhhhhHHHhhccCccccccCccchHHHcC
Confidence            5789999999999999999999999999999888888888764211      111                  2555688


Q ss_pred             CCccceEEEE-eCCeEEEEEeCC-ChHHHHHHHHHH
Q 018973          308 VVEVPTFLFI-RDGQIRGRYVGS-GKGELIGEILRY  341 (348)
Q Consensus       308 V~~~PTl~~~-~~G~~v~~~~G~-~~~~L~~~l~~~  341 (348)
                      +.++|+++++ ++|+++.++.|. +.++|.+.|+++
T Consensus       108 v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~l  143 (143)
T d2b5xa1         108 NEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNRV  143 (143)
T ss_dssp             CCCSSEEEEECTTCBEEEEEESCSTTHHHHHHHHHH
T ss_pred             CCcCCEEEEECCCCEEEEEEECCCCHHHHHHHHHhC
Confidence            8999976555 899999999999 889999888764

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.37  E-value=2.2e-13  Score=107.74  Aligned_cols=99  Identities=16%  Similarity=0.225  Sum_probs=76.1

Q ss_pred             eeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC--cEEEEEE-----ECCCchhHHHHHHh
Q 018973          233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG--TVVFARM-----NGDENDSCMQFLRD  305 (348)
Q Consensus       233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--~v~~~~v-----d~~~~~~~~~l~~~  305 (348)
                      ++++ +.++|++++..    ++.++|.||++||..|..  |.++++++.+.+  ++....|     |++++++   ++.+
T Consensus         6 ~v~L-~~~nFd~~i~~----~~~~lV~F~~~wc~~~~~--~~~~~la~~~~~~~~~~~~~V~~~~vd~~~n~~---l~~~   75 (122)
T d1g7ea_           6 ALPL-DTVTFYKVIPK----SKFVLVKFDTQYPYGEKQ--DEFKRLAENSASSDDLLVAEVGISDYGDKLNME---LSEK   75 (122)
T ss_dssp             SCSC-SHHHHHHHGGG----SSEEEEEEECSSCCTTTT--HHHHHHHHHGGGCSSEEEEEEESCCTTSCHHHH---HHHH
T ss_pred             eEEC-CHHhHHHHHhh----CCeEEEEEecCCcCcccC--HHHHHHHHHHHHHHHHhhhccceeeccccccHH---HHHh
Confidence            4444 56889999874    689999999999988864  788899888843  2333344     4555554   8888


Q ss_pred             C--CCCccceEEEEeCCeEE--EEEeCC-ChHHHHHHHHHH
Q 018973          306 M--NVVEVPTFLFIRDGQIR--GRYVGS-GKGELIGEILRY  341 (348)
Q Consensus       306 ~--~V~~~PTl~~~~~G~~v--~~~~G~-~~~~L~~~l~~~  341 (348)
                      +  +|.++||+.+|++|+..  ..+.|. +.+.|.+||+++
T Consensus        76 ~~~~I~~yPTi~~f~~G~~~~~~~y~G~rt~~~l~~fi~~~  116 (122)
T d1g7ea_          76 YKLDKESYPVFYLFRDGDFENPVPYSGAVKVGAIQRWLKGQ  116 (122)
T ss_dssp             HTCSSSSCEEEEEEESSCCCCCEEEESCCCHHHHHHHHHTT
T ss_pred             hcccccCCCeEEEEecCcccCceecCCCCCHHHHHHHHHhc
Confidence            6  57899999999998643  467898 999999999986

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=99.37  E-value=1.5e-12  Score=105.34  Aligned_cols=90  Identities=13%  Similarity=0.198  Sum_probs=72.8

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCch-------------------------hHHHHHHh
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDEND-------------------------SCMQFLRD  305 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~-------------------------~~~~l~~~  305 (348)
                      .+++++|+||++||++|+...|.+.++.++++. .+.++.+..+...                         ....+++.
T Consensus        22 ~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~  101 (143)
T d2fy6a1          22 KDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLNYPKLPVVTDNGGTIAQS  101 (143)
T ss_dssp             TTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEECTTCHHHHH
T ss_pred             CCCEEEEEEECCCCccccccCcchhhhhhhhccCCcEEEEEeeeecccccchhhhhhhhhhcCCcccccccccchHHHHH
Confidence            589999999999999999999999999988753 3666666643110                         01247889


Q ss_pred             CCCCccceEEEE-eCCeEEEEEeCC-ChHHHHHHHHHH
Q 018973          306 MNVVEVPTFLFI-RDGQIRGRYVGS-GKGELIGEILRY  341 (348)
Q Consensus       306 ~~V~~~PTl~~~-~~G~~v~~~~G~-~~~~L~~~l~~~  341 (348)
                      |++.++|+++++ ++|+++.++.|. +.+++.+.|++.
T Consensus       102 ~~v~~~P~~~liD~~G~i~~~~~G~~~~~~~~~~l~~~  139 (143)
T d2fy6a1         102 LNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRDP  139 (143)
T ss_dssp             TTCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCT
T ss_pred             cCCCccCEEEEECCCCEEEEEEECCCCHHHHHHHHHHH
Confidence            999999987666 899999999999 999999988864

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.36  E-value=3.6e-13  Score=106.50  Aligned_cols=84  Identities=17%  Similarity=0.194  Sum_probs=64.5

Q ss_pred             CceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC---cEEEEEeCCC--chhHHHHHHHcC--
Q 018973          120 RVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND---VEFILVMGDE--SEKTKELCEREK--  192 (348)
Q Consensus       120 ~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~---v~f~~vd~d~--~~~~~~l~~~~~--  192 (348)
                      .++++ |.++|++++.  +++.++|+||++||..|+  .|.++++++++.+   ....+|++.+  +++.+++|++|+  
T Consensus         5 ~~v~L-~~~nFd~~i~--~~~~~lV~F~~~wc~~~~--~~~~~~la~~~~~~~~~~~~~V~~~~vd~~~n~~l~~~~~~~   79 (122)
T d1g7ea_           5 GALPL-DTVTFYKVIP--KSKFVLVKFDTQYPYGEK--QDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLD   79 (122)
T ss_dssp             SSCSC-SHHHHHHHGG--GSSEEEEEEECSSCCTTT--THHHHHHHHHGGGCSSEEEEEEESCCTTSCHHHHHHHHHTCS
T ss_pred             ceEEC-CHHhHHHHHh--hCCeEEEEEecCCcCccc--CHHHHHHHHHHHHHHHHhhhccceeeccccccHHHHHhhccc
Confidence            35565 8999999997  689999999999998886  4889999888743   4444554332  233678998865  


Q ss_pred             cCCCCeEEEeeccccc
Q 018973          193 IKKVPHFSFYKSMEKI  208 (348)
Q Consensus       193 V~~~Pt~~~~~~g~~v  208 (348)
                      |+++||+.+|++|+..
T Consensus        80 I~~yPTi~~f~~G~~~   95 (122)
T d1g7ea_          80 KESYPVFYLFRDGDFE   95 (122)
T ss_dssp             SSSCEEEEEEESSCCC
T ss_pred             ccCCCeEEEEecCccc
Confidence            7899999999998654

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=99.36  E-value=3.9e-13  Score=108.08  Aligned_cols=75  Identities=13%  Similarity=0.021  Sum_probs=58.8

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCch--------------------hHHHHHHHcCcCCCC
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESE--------------------KTKELCEREKIKKVP  197 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~--------------------~~~~l~~~~~V~~~P  197 (348)
                      ++|+|||+|||+||+||+...|.|++++++.  +.++.++.+...                    ....+.+.|+|.++|
T Consensus        19 ~Gk~vvl~FwatWC~pC~~e~p~l~~~~~~~--~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P   96 (136)
T d1z5ye1          19 QGKPVLLNVWATWCPTSRAEHQYLNQLSAQG--IRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAP   96 (136)
T ss_dssp             SSSCEEEEEECTTCHHHHHHHHHHHHHHHTT--CCEEEEEESCCHHHHHHHHHHHCCCCSEEEEESSCHHHHHHTCCSBS
T ss_pred             CCCEEEEEEEcCcCCCcCccccchhhhhhhh--hhhcccccccchhhhHHHHHHcCCccceeecccchhHHHhcccCCcc
Confidence            6899999999999999999999999998754  455555544321                    123578899999999


Q ss_pred             eEEEe-eccccccccccC
Q 018973          198 HFSFY-KSMEKIHEEEGI  214 (348)
Q Consensus       198 t~~~~-~~g~~v~~~~G~  214 (348)
                      |.+++ ++|+.+.++.|.
T Consensus        97 ~~~liD~~G~i~~~~~G~  114 (136)
T d1z5ye1          97 ETFLIDGNGIIRYRHAGD  114 (136)
T ss_dssp             EEEEECTTSCEEEEEESC
T ss_pred             eEEEEcCCCEEEEEEEcC
Confidence            85555 789999888884

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.33  E-value=1.2e-12  Score=104.82  Aligned_cols=70  Identities=16%  Similarity=0.171  Sum_probs=56.5

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCch--------------------hHHHHHHHcCcCCCC
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESE--------------------KTKELCEREKIKKVP  197 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~--------------------~~~~l~~~~~V~~~P  197 (348)
                      ++|++||+|||+||++|+...|.|.+++++++++.++.|+.++..                    ...++.+.||+.++|
T Consensus        24 ~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~~~~~v~v~~~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v~~~P  103 (134)
T d1zzoa1          24 LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQP  103 (134)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCCSSS
T ss_pred             CCCEEEEEecccccCcccccchhhHHHHhhhcccccccccccccchhHHHHHHhcCCcceeEEeeccchHHHhcCCCccC
Confidence            689999999999999999999999999999999888888865421                    123677778888888


Q ss_pred             eEEEee-cccc
Q 018973          198 HFSFYK-SMEK  207 (348)
Q Consensus       198 t~~~~~-~g~~  207 (348)
                      +.+++. +|+.
T Consensus       104 ~~~iiD~~G~i  114 (134)
T d1zzoa1         104 AYAFVDPHGNV  114 (134)
T ss_dssp             EEEEECTTCCE
T ss_pred             eEEEECCCCeE
Confidence            876663 5553

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=3.5e-12  Score=103.96  Aligned_cols=106  Identities=10%  Similarity=0.193  Sum_probs=80.9

Q ss_pred             CChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHH---HHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccce
Q 018973          237 HSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTV---IKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPT  313 (348)
Q Consensus       237 ~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PT  313 (348)
                      ....+|++.+..++..+|+++|+|+++||++|+.+....   .++.+.+.+++.++.+|.+..+ ..+++++|+|.++||
T Consensus        26 ~~~~~~~~A~~~Ak~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~~fV~~~v~~~~~e-~~~~~~~y~v~~~Pt  104 (147)
T d2dlxa1          26 MHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEE-GQRYIQFYKLGDFPY  104 (147)
T ss_dssp             SCCSCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSHH-HHHHHHHHTCCSSSE
T ss_pred             cccCCHHHHHHHHHHcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhhheeEeeecccchh-hhhhhhheecCceeE
Confidence            334556666666666799999999999999999987644   4555545456899999988653 466999999999999


Q ss_pred             EEEEe--CCeEEEEEeCCChHHHHHHHHHHhC
Q 018973          314 FLFIR--DGQIRGRYVGSGKGELIGEILRYQG  343 (348)
Q Consensus       314 l~~~~--~G~~v~~~~G~~~~~L~~~l~~~~~  343 (348)
                      ++++.  +|+++....+.+.+++...|++.++
T Consensus       105 i~~idp~~ge~v~~~~~~~~~~fl~~L~~fl~  136 (147)
T d2dlxa1         105 VSILDPRTGQKLVEWHQLDVSSFLDQVTGFLG  136 (147)
T ss_dssp             EEEECTTTCCCCEEESSCCHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCeEecccCCCCHHHHHHHHHHHHh
Confidence            98884  6887755544488888888877654

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=99.30  E-value=1.3e-12  Score=105.76  Aligned_cols=79  Identities=15%  Similarity=0.148  Sum_probs=64.1

Q ss_pred             hcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCc-------------------------hhHHHHH
Q 018973          136 LAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDES-------------------------EKTKELC  188 (348)
Q Consensus       136 ~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~-------------------------~~~~~l~  188 (348)
                      ..++|++||+|||+||++|+...|.+.++.+++.  ++.++.|..+..                         +...+++
T Consensus        20 ~~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~   99 (143)
T d2fy6a1          20 LKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLNYPKLPVVTDNGGTIA   99 (143)
T ss_dssp             CCTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEECTTCHHH
T ss_pred             HhCCCEEEEEEECCCCccccccCcchhhhhhhhccCCcEEEEEeeeecccccchhhhhhhhhhcCCcccccccccchHHH
Confidence            3479999999999999999999999999999875  478777775421                         1124789


Q ss_pred             HHcCcCCCCeEEEe-eccccccccccC
Q 018973          189 EREKIKKVPHFSFY-KSMEKIHEEEGI  214 (348)
Q Consensus       189 ~~~~V~~~Pt~~~~-~~g~~v~~~~G~  214 (348)
                      +.|||+++|+++++ ++|+.+....|.
T Consensus       100 ~~~~v~~~P~~~liD~~G~i~~~~~G~  126 (143)
T d2fy6a1         100 QSLNISVYPSWALIGKDGDVQRIVKGS  126 (143)
T ss_dssp             HHTTCCSSSEEEEECTTSCEEEEEESC
T ss_pred             HHcCCCccCEEEEECCCCEEEEEEECC
Confidence            99999999997776 789988877774

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.30  E-value=2.7e-12  Score=102.87  Aligned_cols=70  Identities=16%  Similarity=0.177  Sum_probs=59.2

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCch-------------------hHHHHHHHcCcCCCCe
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESE-------------------KTKELCEREKIKKVPH  198 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~-------------------~~~~l~~~~~V~~~Pt  198 (348)
                      ++|+|||+|||+||++|+...|.|++++++++++.++.|+.++..                   ....+++.|||+++|+
T Consensus        23 ~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~  102 (134)
T d1lu4a_          23 QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQPA  102 (134)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCSSSE
T ss_pred             CCCEEEEEEeecccCCceecchhHHHHhhhhccccccccccccchhhhhhhhhhhccccceeeCchHHHHHHcCCCcCCE
Confidence            689999999999999999999999999999999999999987531                   1246788899999999


Q ss_pred             EEEee-cccc
Q 018973          199 FSFYK-SMEK  207 (348)
Q Consensus       199 ~~~~~-~g~~  207 (348)
                      ++++. +|+.
T Consensus       103 ~~lid~~G~i  112 (134)
T d1lu4a_         103 FVFYRADGTS  112 (134)
T ss_dssp             EEEECTTSCE
T ss_pred             EEEEeCCCeE
Confidence            77774 5654

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.29  E-value=7.1e-12  Score=100.35  Aligned_cols=88  Identities=20%  Similarity=0.239  Sum_probs=69.3

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchh-HH------------------HHHHhCCCCccc
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDS-CM------------------QFLRDMNVVEVP  312 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~-~~------------------~l~~~~~V~~~P  312 (348)
                      .+|+++|+||++||++|+...|.|.++.++++ .+.++.|+.++..+ .+                  .+++.|++.++|
T Consensus        23 ~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~-~v~~v~v~~~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P  101 (134)
T d1lu4a_          23 QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP-AVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQP  101 (134)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCSSS
T ss_pred             CCCEEEEEEeecccCCceecchhHHHHhhhhc-cccccccccccchhhhhhhhhhhccccceeeCchHHHHHHcCCCcCC
Confidence            47899999999999999999999999998875 47888888764332 11                  266679999999


Q ss_pred             eEEEE-eCCeEEEE--EeCC-ChHHHHHHHHH
Q 018973          313 TFLFI-RDGQIRGR--YVGS-GKGELIGEILR  340 (348)
Q Consensus       313 Tl~~~-~~G~~v~~--~~G~-~~~~L~~~l~~  340 (348)
                      +++++ ++|+++..  ..|. +.++|.+.|.+
T Consensus       102 ~~~lid~~G~i~~v~~~~g~~~~~~l~~~l~~  133 (134)
T d1lu4a_         102 AFVFYRADGTSTFVNNPTAAMSQDELSGRVAA  133 (134)
T ss_dssp             EEEEECTTSCEEEECCSSSCCCHHHHHHHHHH
T ss_pred             EEEEEeCCCeEEEEeccCCCCCHHHHHHHHHc
Confidence            87666 68987543  3566 88899988875

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.28  E-value=1.4e-11  Score=98.32  Aligned_cols=88  Identities=19%  Similarity=0.288  Sum_probs=69.1

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch-hHH-------------------HHHHhCCCCcc
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND-SCM-------------------QFLRDMNVVEV  311 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~-~~~-------------------~l~~~~~V~~~  311 (348)
                      .+++++|+||++||++|+...|.+.++.+++++ +.++.++.++.. ..+                   ++.++|++.++
T Consensus        24 ~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~~-~~~v~v~~~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v~~~  102 (134)
T d1zzoa1          24 LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPE-VTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQ  102 (134)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCCSS
T ss_pred             CCCEEEEEecccccCcccccchhhHHHHhhhcc-cccccccccccchhHHHHHHhcCCcceeEEeeccchHHHhcCCCcc
Confidence            479999999999999999999999999999865 666666654322 111                   36667899999


Q ss_pred             ceEEEE-eCCeEEEEEeCC-ChHHHHHHHHHH
Q 018973          312 PTFLFI-RDGQIRGRYVGS-GKGELIGEILRY  341 (348)
Q Consensus       312 PTl~~~-~~G~~v~~~~G~-~~~~L~~~l~~~  341 (348)
                      |+++++ ++|++.. +.|. +.++|.+.|+++
T Consensus       103 P~~~iiD~~G~i~~-~~g~~~~~~l~~~i~~L  133 (134)
T d1zzoa1         103 PAYAFVDPHGNVDV-VRGRMSQDELTRRVTAL  133 (134)
T ss_dssp             SEEEEECTTCCEEE-EESCCCHHHHHHHHHHH
T ss_pred             CeEEEECCCCeEEE-EECCCCHHHHHHHHHhh
Confidence            976666 7898654 5687 999999998875

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.26  E-value=9e-12  Score=100.73  Aligned_cols=72  Identities=18%  Similarity=0.299  Sum_probs=59.7

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC---CcEEEEEeCCCc---------------------hhHHHHHHHcCc
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN---DVEFILVMGDES---------------------EKTKELCEREKI  193 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~---~v~f~~vd~d~~---------------------~~~~~l~~~~~V  193 (348)
                      ++|+|+|+|||+||++|+...|.|.+++++|.   ++.++.|+.|+.                     +...++.+.|+|
T Consensus        25 ~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~y~v  104 (144)
T d1o8xa_          25 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNV  104 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTC
T ss_pred             CCCEEEEEeccccccccccccchhHHhhhhcccccccccccccccccHHHHHHHHhhccccceeeecccchhhHHHHcCC
Confidence            68999999999999999999999999999984   378888887753                     123478999999


Q ss_pred             CCCCeEEEee-c-ccccc
Q 018973          194 KKVPHFSFYK-S-MEKIH  209 (348)
Q Consensus       194 ~~~Pt~~~~~-~-g~~v~  209 (348)
                      +++||++++. + |+++.
T Consensus       105 ~~~Pt~~liD~~~G~Vi~  122 (144)
T d1o8xa_         105 ESIPTLIGVDADSGDVVT  122 (144)
T ss_dssp             CSSSEEEEEETTTCCEEE
T ss_pred             CcCCEEEEEeCCCCEEEE
Confidence            9999988886 5 55554

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=8.8e-12  Score=101.53  Aligned_cols=91  Identities=14%  Similarity=0.163  Sum_probs=66.1

Q ss_pred             CHHHHHHHHHhcC--CCEEEEEEeCCCCHHHHhhhhHH---HHHHHHc-CCcEEEEEeCCCchhHHHHHHHcCcCCCCeE
Q 018973          126 SIEEFDEALRLAK--NKLVVVEFAASRSLDSSKIYPFM---VDLSRQC-NDVEFILVMGDESEKTKELCEREKIKKVPHF  199 (348)
Q Consensus       126 s~~~f~~~l~~~~--~k~vvV~F~a~wC~~C~~~~p~l---~~la~~~-~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~  199 (348)
                      -..+|++++..++  +|+++|+|+++||++|+.+....   +++.+-. .++.++.+|.+..+ ..+++++|+|.++||+
T Consensus        27 ~~~~~~~A~~~Ak~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~~fV~~~v~~~~~e-~~~~~~~y~v~~~Pti  105 (147)
T d2dlxa1          27 HKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEE-GQRYIQFYKLGDFPYV  105 (147)
T ss_dssp             CCSCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSHH-HHHHHHHHTCCSSSEE
T ss_pred             ccCCHHHHHHHHHHcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhhheeEeeecccchh-hhhhhhheecCceeEE
Confidence            3455666655443  89999999999999999987533   2333222 24789999988643 6889999999999999


Q ss_pred             EEee--ccccccccccCCCC
Q 018973          200 SFYK--SMEKIHEEEGIGPD  217 (348)
Q Consensus       200 ~~~~--~g~~v~~~~G~~~~  217 (348)
                      +++.  +|+.+..+.+..++
T Consensus       106 ~~idp~~ge~v~~~~~~~~~  125 (147)
T d2dlxa1         106 SILDPRTGQKLVEWHQLDVS  125 (147)
T ss_dssp             EEECTTTCCCCEEESSCCHH
T ss_pred             EEEeCCCCeEecccCCCCHH
Confidence            9985  57777655444333

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.25  E-value=2.2e-11  Score=98.75  Aligned_cols=73  Identities=19%  Similarity=0.293  Sum_probs=59.2

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC--cEEEEEEECCCchh---------------------HHHHHHhCCC
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG--TVVFARMNGDENDS---------------------CMQFLRDMNV  308 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--~v~~~~vd~~~~~~---------------------~~~l~~~~~V  308 (348)
                      .+|+++|+|||+||++|+.+.|.|.++.+++++  .+.++.|+.|+..+                     ...+.+.|+|
T Consensus        27 ~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~y~v  106 (144)
T d1i5ga_          27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDV  106 (144)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccHHHHHHHHHhCCCCceeeEChHHHHHHHHHCCC
Confidence            589999999999999999999999999999864  48888888875432                     1236788999


Q ss_pred             CccceEEEE-eC-CeEEE
Q 018973          309 VEVPTFLFI-RD-GQIRG  324 (348)
Q Consensus       309 ~~~PTl~~~-~~-G~~v~  324 (348)
                      .++||++++ ++ |+++.
T Consensus       107 ~~iPt~~lid~~~G~vi~  124 (144)
T d1i5ga_         107 KSIPTLVGVEADSGNIIT  124 (144)
T ss_dssp             CSSSEEEEEETTTCCEEE
T ss_pred             CCcCEEEEEeCCCCEEEe
Confidence            999987666 55 78764

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=4e-12  Score=101.94  Aligned_cols=84  Identities=12%  Similarity=0.074  Sum_probs=61.4

Q ss_pred             HHHHHHhc--CCCEEEEEEeCCCCHHHHhhhhHHHHHHH---HcCCcEEEEEeCCCchhHHHHHH-HcCcCCCCeEEEe-
Q 018973          130 FDEALRLA--KNKLVVVEFAASRSLDSSKIYPFMVDLSR---QCNDVEFILVMGDESEKTKELCE-REKIKKVPHFSFY-  202 (348)
Q Consensus       130 f~~~l~~~--~~k~vvV~F~a~wC~~C~~~~p~l~~la~---~~~~v~f~~vd~d~~~~~~~l~~-~~~V~~~Pt~~~~-  202 (348)
                      |++.++.+  .+|+|+|+|||+||++|+.+.|.+.+..+   ...++..++||.++.+.   ++. .+....+||++++ 
T Consensus        14 ~~~al~~A~~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~---~~~~~~~~~~~Pt~~~~d   90 (135)
T d1sena_          14 LEDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPK---DEDFSPDGGYIPRILFLD   90 (135)
T ss_dssp             HHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCS---CGGGCTTCSCSSEEEEEC
T ss_pred             HHHHHHHHHHcCCcEEEEEEecCCCCceecchhhhhhHHHHHhcCCcEEEeCCCCcCHH---HHHHHhhcccceeEEEEC
Confidence            44444333  49999999999999999999999866544   33458888999776433   333 3455678999888 


Q ss_pred             eccccccccccCCC
Q 018973          203 KSMEKIHEEEGIGP  216 (348)
Q Consensus       203 ~~g~~v~~~~G~~~  216 (348)
                      .+|+.+.++.|...
T Consensus        91 ~~G~~~~~~~g~~~  104 (135)
T d1sena_          91 PSGKVHPEIINENG  104 (135)
T ss_dssp             TTSCBCTTCCCTTS
T ss_pred             CCCeEEEEecCCCC
Confidence            47888888777543

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=99.24  E-value=9.6e-12  Score=100.65  Aligned_cols=78  Identities=17%  Similarity=0.211  Sum_probs=63.3

Q ss_pred             cCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCch------------------------hHHHHHHHc
Q 018973          137 AKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESE------------------------KTKELCERE  191 (348)
Q Consensus       137 ~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~------------------------~~~~l~~~~  191 (348)
                      .++|+++|+||++||++|+...|.|.++.++|++ +.++.|+.+..+                        ...++++.|
T Consensus        27 ~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~  106 (143)
T d2b5xa1          27 IGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAF  106 (143)
T ss_dssp             TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHHHHT
T ss_pred             hCCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhccccceeEEeeccccccchhhhhhHHHhhccCccccccCccchHHHc
Confidence            3789999999999999999999999999999986 888888764311                        112577788


Q ss_pred             CcCCCCeEEEe-eccccccccccC
Q 018973          192 KIKKVPHFSFY-KSMEKIHEEEGI  214 (348)
Q Consensus       192 ~V~~~Pt~~~~-~~g~~v~~~~G~  214 (348)
                      +|.++|+++++ ++|+.+..+.|.
T Consensus       107 ~v~~~P~~~~id~~G~i~~~~~G~  130 (143)
T d2b5xa1         107 ENEYVPAYYVFDKTGQLRHFQAGG  130 (143)
T ss_dssp             CCCCSSEEEEECTTCBEEEEEESC
T ss_pred             CCCcCCEEEEECCCCEEEEEEECC
Confidence            99999986655 789888887774

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.23  E-value=6.3e-11  Score=94.87  Aligned_cols=90  Identities=19%  Similarity=0.296  Sum_probs=72.0

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCc-EEEEEEECCCch-hHH------------------HHHHhCCCCcc
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGT-VVFARMNGDEND-SCM------------------QFLRDMNVVEV  311 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~~~~~-~~~------------------~l~~~~~V~~~  311 (348)
                      .+++++|+||++||++|..+.+.+.++.+++.+. +.++.++.++.. ..+                  .+++.|++.++
T Consensus        24 ~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  103 (137)
T d1st9a_          24 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPL  103 (137)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHTTCCSCEEEETTSHHHHHTTCCSS
T ss_pred             CCCEEEEEEeeccccceeecccccccccccccccccccccccccchhhhHHHHHHHcCCCccccccccchhhhhhhcccc
Confidence            4789999999999999999999999999998643 888888865432 222                  35666899999


Q ss_pred             ceEE-EEeCCeEEEEEeCC-ChHHHHHHHHHH
Q 018973          312 PTFL-FIRDGQIRGRYVGS-GKGELIGEILRY  341 (348)
Q Consensus       312 PTl~-~~~~G~~v~~~~G~-~~~~L~~~l~~~  341 (348)
                      |+++ +.++|+++.++.|. +.+.+.+.|+..
T Consensus       104 P~~~liD~~G~i~~~~~G~~~~~~~~~~l~~l  135 (137)
T d1st9a_         104 PTTFLINPEGKVVKVVTGTMTESMIHDYMNLI  135 (137)
T ss_dssp             CEEEEECTTSEEEEEEESCCCHHHHHHHHHHH
T ss_pred             ceEEEECCCCEEEEEEECCCCHHHHHHHHHhh
Confidence            9654 44899999999999 888887776543

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.22  E-value=5e-12  Score=102.45  Aligned_cols=76  Identities=13%  Similarity=0.128  Sum_probs=59.0

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCch--------------------hHHHHHHHcCcCCCC
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESE--------------------KTKELCEREKIKKVP  197 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~--------------------~~~~l~~~~~V~~~P  197 (348)
                      ++|++||+|||+||++|+...|.+.++.+.++ +.++.|..+...                    ...++.+.|+|.++|
T Consensus        30 kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P  108 (144)
T d1knga_          30 KGKVSLVNVWASWCVPCHDEAPLLTELGKDKR-FQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGVP  108 (144)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHTTCTT-SEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSSC
T ss_pred             CCCEEEEEeeccccccccccCchhhhhhhccC-ceeEEEEeeechHHHHHHHHHcCCccccccccccchhhhhcCccccc
Confidence            78999999999999999999999999987764 444444433211                    124688899999999


Q ss_pred             eEEEe-eccccccccccC
Q 018973          198 HFSFY-KSMEKIHEEEGI  214 (348)
Q Consensus       198 t~~~~-~~g~~v~~~~G~  214 (348)
                      |.+++ ++|+.+.++.|.
T Consensus       109 ~~~liD~~G~i~~~~~G~  126 (144)
T d1knga_         109 ETFVVGREGTIVYKLVGP  126 (144)
T ss_dssp             EEEEECTTSBEEEEEESC
T ss_pred             eEEEEcCCCeEEEEEeCC
Confidence            86665 689999888774

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.20  E-value=6.5e-11  Score=99.04  Aligned_cols=92  Identities=20%  Similarity=0.313  Sum_probs=71.2

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhC-CcEEEEEEECC--CchhHHHHHHh-----------------------
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMA-GTVVFARMNGD--ENDSCMQFLRD-----------------------  305 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~--~~~~~~~l~~~-----------------------  305 (348)
                      .+|+++|+||++||++|+...+.+.++.+.+. .++.++.+..+  ..+..+++.++                       
T Consensus        55 kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  134 (176)
T d1jfua_          55 RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAI  134 (176)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTT
T ss_pred             CCCEEEEEeccCcccchHHHHHhhhhccccccccccccccccccccchhhhhhhHhhhCCcceeeeecchhHHHHHHhhh
Confidence            58999999999999999999999999998885 34666666654  33344444554                       


Q ss_pred             CCCCccceE-EEEeCCeEEEEEeCC---ChHHHHHHHHHHhC
Q 018973          306 MNVVEVPTF-LFIRDGQIRGRYVGS---GKGELIGEILRYQG  343 (348)
Q Consensus       306 ~~V~~~PTl-~~~~~G~~v~~~~G~---~~~~L~~~l~~~~~  343 (348)
                      +++.++|++ ++.++|+++.++.|.   +.+++++.|+.++|
T Consensus       135 ~~v~~~P~~~lID~~G~I~~~~~G~~~~~~~e~~~~l~al~~  176 (176)
T d1jfua_         135 GRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAATG  176 (176)
T ss_dssp             TCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHHHC
T ss_pred             ccCCCCCeEEEEcCCCEEEEEEECCCCCChHHHHHHHHHhcC
Confidence            456678975 555899999999996   56889999998876

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=99.20  E-value=4.4e-11  Score=96.83  Aligned_cols=74  Identities=24%  Similarity=0.404  Sum_probs=59.7

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhC--CcEEEEEEECCCchh---------------------HHHHHHhCCC
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMA--GTVVFARMNGDENDS---------------------CMQFLRDMNV  308 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~--~~v~~~~vd~~~~~~---------------------~~~l~~~~~V  308 (348)
                      .+|+++|+||++||++|+++.|.|.++.+++.  .++.++.|+.++..+                     ..++.+.|+|
T Consensus        27 ~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~v  106 (144)
T d1o73a_          27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGV  106 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTC
T ss_pred             CCCEEEEEeChhhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhHHHHHHHHHhccccceeeeccchHHHHHHHcCC
Confidence            58999999999999999999999999999884  348888888874321                     2247788999


Q ss_pred             CccceEEEE-eC-CeEEEE
Q 018973          309 VEVPTFLFI-RD-GQIRGR  325 (348)
Q Consensus       309 ~~~PTl~~~-~~-G~~v~~  325 (348)
                      .++||++++ ++ |+++.+
T Consensus       107 ~~~Pt~~lID~~~G~Ii~~  125 (144)
T d1o73a_         107 ESIPTLITINADTGAIIGT  125 (144)
T ss_dssp             CSSSEEEEEETTTCCEEES
T ss_pred             CcCCEEEEEECCCCEEEee
Confidence            999987666 45 787753

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.18  E-value=7.6e-12  Score=95.15  Aligned_cols=83  Identities=12%  Similarity=0.209  Sum_probs=69.2

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCC-C
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS-G  330 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~-~  330 (348)
                      ...++|+.|+++||++|+.+.+.|+++..++.  ..++.+|.+++++   +.++|+++ +|++++  +|+.+  ..|. +
T Consensus        14 ~~~p~i~lft~~~C~~C~~a~~~L~~~~~~~~--~~~v~vd~~~~~~---l~~~y~~~-VPvl~i--dg~~~--~~g~~d   83 (100)
T d1wjka_          14 RALPVLTLFTKAPCPLCDEAKEVLQPYKDRFI--LQEVDITLPENST---WYERYKFD-IPVFHL--NGQFL--MMHRVN   83 (100)
T ss_dssp             CCCCEEEEEECSSCHHHHHHHHHTSTTSSSSE--EEEEETTSSTTHH---HHHHSSSS-CSEEEE--SSSEE--EESSCC
T ss_pred             CCCCEEEEEECCCCCChHHHHHHHHHhhhhcc--eEEEecccccCHH---HHHHhccc-CCceee--cCceE--EeCCCC
Confidence            35678999999999999999999999877763  6778888888877   99999987 998765  78765  4577 9


Q ss_pred             hHHHHHHHHHHhCC
Q 018973          331 KGELIGEILRYQGV  344 (348)
Q Consensus       331 ~~~L~~~l~~~~~~  344 (348)
                      +++|+++|++..+.
T Consensus        84 ~~~L~~~L~~l~~~   97 (100)
T d1wjka_          84 TSKLEKQLRKLSGP   97 (100)
T ss_dssp             HHHHHHHHHSSSCS
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999987653

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=99.18  E-value=1.4e-11  Score=104.48  Aligned_cols=74  Identities=14%  Similarity=0.206  Sum_probs=59.2

Q ss_pred             HhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCC-------c-------------------hhHHHH
Q 018973          135 RLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDE-------S-------------------EKTKEL  187 (348)
Q Consensus       135 ~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~-------~-------------------~~~~~l  187 (348)
                      ++.++++|||+|||+||++|+...|.|.+|+++|.+ +.|+.|+..+       .                   +...++
T Consensus        28 sd~kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~~v~~v~i~snd~~~~~~~~~e~~~~~~~~~~~~~p~l~D~~~~~  107 (187)
T d2cvba1          28 SQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEV  107 (187)
T ss_dssp             GGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHH
T ss_pred             HHhCCCeEEEEEeCCCCccchhhhhhhhhhhhhccccceeeeeeccccccccccchHHHHHHHHHhCCcceeeechhhhh
Confidence            444789999999999999999999999999999976 7888887421       0                   112468


Q ss_pred             HHHcCcCCCCeEEEe-eccccc
Q 018973          188 CEREKIKKVPHFSFY-KSMEKI  208 (348)
Q Consensus       188 ~~~~~V~~~Pt~~~~-~~g~~v  208 (348)
                      +++|+|..+|+++++ ++|+.+
T Consensus       108 ~~~~~v~~~P~~~liD~~G~i~  129 (187)
T d2cvba1         108 AKAYRALRTPEVFLFDERRLLR  129 (187)
T ss_dssp             HHHTTCCEESEEEEECTTCBEE
T ss_pred             cccccccceeeEEEEcCCCeEE
Confidence            889999999987666 456665

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=99.16  E-value=4.9e-11  Score=100.98  Aligned_cols=92  Identities=13%  Similarity=0.236  Sum_probs=69.5

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCC-----c---hh------------------HHHHHHh
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDE-----N---DS------------------CMQFLRD  305 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~-----~---~~------------------~~~l~~~  305 (348)
                      .+++++|.||++||++|++..|.|.++.++|++++.++.++...     .   +.                  ..+++++
T Consensus        31 kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~~v~~v~i~snd~~~~~~~~~e~~~~~~~~~~~~~p~l~D~~~~~~~~  110 (187)
T d2cvba1          31 HEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKA  110 (187)
T ss_dssp             CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHH
T ss_pred             CCCeEEEEEeCCCCccchhhhhhhhhhhhhccccceeeeeeccccccccccchHHHHHHHHHhCCcceeeechhhhhccc
Confidence            57999999999999999999999999999998888998887521     0   01                  1136777


Q ss_pred             CCCCccceEEEE-eCCeEEEEEe--C------C-ChHHHHHHHHHHhC
Q 018973          306 MNVVEVPTFLFI-RDGQIRGRYV--G------S-GKGELIGEILRYQG  343 (348)
Q Consensus       306 ~~V~~~PTl~~~-~~G~~v~~~~--G------~-~~~~L~~~l~~~~~  343 (348)
                      |++..+|+++++ ++|+++.+-.  .      . +..+|.+.|++.+.
T Consensus       111 ~~v~~~P~~~liD~~G~i~y~G~idd~~~~~~~~~~~~L~~Ai~~ll~  158 (187)
T d2cvba1         111 YRALRTPEVFLFDERRLLRYHGRVNDNPKDPSKVQSHDLEAAIEALLR  158 (187)
T ss_dssp             TTCCEESEEEEECTTCBEEEEECSSSCTTCGGGCCCCHHHHHHHHHHT
T ss_pred             ccccceeeEEEEcCCCeEEEEeeecCCCCCCCCCCHHHHHHHHHHHHc
Confidence            999999965555 7899875421  0      1 33578888888754

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1e-11  Score=99.54  Aligned_cols=84  Identities=13%  Similarity=0.268  Sum_probs=61.3

Q ss_pred             HHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHH--hCCcEEEEEEECCCchhHHHHHHh-CCCCccceEEEE-
Q 018973          242 VEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQ--MAGTVVFARMNGDENDSCMQFLRD-MNVVEVPTFLFI-  317 (348)
Q Consensus       242 ~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~--~~~~v~~~~vd~~~~~~~~~l~~~-~~V~~~PTl~~~-  317 (348)
                      +++.++.+...+|+++|+||++||++|+.+.|.+.+..+.  ...++..+.+|.++.+.   +.+. .....+||++++ 
T Consensus        14 ~~~al~~A~~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~---~~~~~~~~~~~Pt~~~~d   90 (135)
T d1sena_          14 LEDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPK---DEDFSPDGGYIPRILFLD   90 (135)
T ss_dssp             HHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCS---CGGGCTTCSCSSEEEEEC
T ss_pred             HHHHHHHHHHcCCcEEEEEEecCCCCceecchhhhhhHHHHHhcCCcEEEeCCCCcCHH---HHHHHhhcccceeEEEEC
Confidence            4555555555699999999999999999999988544332  23468888999877665   3333 345568999888 


Q ss_pred             eCCeEEEEEeC
Q 018973          318 RDGQIRGRYVG  328 (348)
Q Consensus       318 ~~G~~v~~~~G  328 (348)
                      .+|+.+..+.|
T Consensus        91 ~~G~~~~~~~g  101 (135)
T d1sena_          91 PSGKVHPEIIN  101 (135)
T ss_dssp             TTSCBCTTCCC
T ss_pred             CCCeEEEEecC
Confidence            58988876666

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.11  E-value=5.8e-11  Score=98.50  Aligned_cols=84  Identities=7%  Similarity=0.039  Sum_probs=65.8

Q ss_pred             HHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHc---CcCCCCeEEEee
Q 018973          127 IEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCERE---KIKKVPHFSFYK  203 (348)
Q Consensus       127 ~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~---~V~~~Pt~~~~~  203 (348)
                      .++..+.+++.+++.+++.||++||+||++..|.|++++++++++.|..|+.|+   .++..++|   +...+|+++++.
T Consensus        42 ~~~~~~~l~~~~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~~~~~~~i~~d~---~~~~~~~~~~~~~~~~p~~~~~d  118 (166)
T d1z6na1          42 PSALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQPNIELAIISKGR---AEDDLRQRLALERIAIPLVLVLD  118 (166)
T ss_dssp             CHHHHHHHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCTTEEEEEECHHH---HHHHTTTTTTCSSCCSSEEEEEC
T ss_pred             cHHHHHHHHHhcCCeEEEEEEeCcCccHHHHHHHHHHHHHHCCCCcEEEEECcc---CHHHHHHHHHhccccccceeecC
Confidence            345556667667899999999999999999999999999999999999999887   55688888   555778877664


Q ss_pred             -cccccccccc
Q 018973          204 -SMEKIHEEEG  213 (348)
Q Consensus       204 -~g~~v~~~~G  213 (348)
                       +++....+.+
T Consensus       119 ~~~~~~~~~~~  129 (166)
T d1z6na1         119 EEFNLLGRFVE  129 (166)
T ss_dssp             TTCCEEEEEES
T ss_pred             ccchhcccccc
Confidence             3444444443

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.08  E-value=3.4e-10  Score=91.13  Aligned_cols=73  Identities=19%  Similarity=0.360  Sum_probs=58.8

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC--cEEEEEEECCCch---------------------hHHHHHHhCCC
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG--TVVFARMNGDEND---------------------SCMQFLRDMNV  308 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--~v~~~~vd~~~~~---------------------~~~~l~~~~~V  308 (348)
                      .+|+++|+||++||++|+...|.+.++.+++.+  .+.++.++.++..                     ...++.+.|+|
T Consensus        25 ~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~y~v  104 (144)
T d1o8xa_          25 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNV  104 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTC
T ss_pred             CCCEEEEEeccccccccccccchhHHhhhhcccccccccccccccccHHHHHHHHhhccccceeeecccchhhHHHHcCC
Confidence            589999999999999999999999999999854  3788888876432                     12357888999


Q ss_pred             CccceEEEEe-C-CeEEE
Q 018973          309 VEVPTFLFIR-D-GQIRG  324 (348)
Q Consensus       309 ~~~PTl~~~~-~-G~~v~  324 (348)
                      .++||++++. + |+++.
T Consensus       105 ~~~Pt~~liD~~~G~Vi~  122 (144)
T d1o8xa_         105 ESIPTLIGVDADSGDVVT  122 (144)
T ss_dssp             CSSSEEEEEETTTCCEEE
T ss_pred             CcCCEEEEEeCCCCEEEE
Confidence            9999876664 6 67764

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.06  E-value=9.5e-11  Score=93.82  Aligned_cols=77  Identities=18%  Similarity=0.279  Sum_probs=62.8

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCCCch-------------------hHHHHHHHcCcCCC
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGDESE-------------------KTKELCEREKIKKV  196 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d~~~-------------------~~~~l~~~~~V~~~  196 (348)
                      ++++++|+||++||++|+...|.+.++.+++.+  +.++.|+.++..                   ...++++.|++.++
T Consensus        24 ~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  103 (137)
T d1st9a_          24 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPL  103 (137)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHTTCCSCEEEETTSHHHHHTTCCSS
T ss_pred             CCCEEEEEEeeccccceeecccccccccccccccccccccccccchhhhHHHHHHHcCCCccccccccchhhhhhhcccc
Confidence            689999999999999999999999999999864  888888876532                   12367788899999


Q ss_pred             CeEEEe-eccccccccccC
Q 018973          197 PHFSFY-KSMEKIHEEEGI  214 (348)
Q Consensus       197 Pt~~~~-~~g~~v~~~~G~  214 (348)
                      |+++++ ++|+.+.++.|.
T Consensus       104 P~~~liD~~G~i~~~~~G~  122 (137)
T d1st9a_         104 PTTFLINPEGKVVKVVTGT  122 (137)
T ss_dssp             CEEEEECTTSEEEEEEESC
T ss_pred             ceEEEECCCCEEEEEEECC
Confidence            986655 678888877773

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.99  E-value=6.9e-11  Score=89.69  Aligned_cols=64  Identities=13%  Similarity=0.126  Sum_probs=53.3

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeeccccc
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKI  208 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~~v  208 (348)
                      ...++|+.|+++||++|+.+.+.|+++..+|+ .+++.+|.++   ..++.++|+++ +|++++  +|+.+
T Consensus        14 ~~~p~i~lft~~~C~~C~~a~~~L~~~~~~~~-~~~v~vd~~~---~~~l~~~y~~~-VPvl~i--dg~~~   77 (100)
T d1wjka_          14 RALPVLTLFTKAPCPLCDEAKEVLQPYKDRFI-LQEVDITLPE---NSTWYERYKFD-IPVFHL--NGQFL   77 (100)
T ss_dssp             CCCCEEEEEECSSCHHHHHHHHHTSTTSSSSE-EEEEETTSST---THHHHHHSSSS-CSEEEE--SSSEE
T ss_pred             CCCCEEEEEECCCCCChHHHHHHHHHhhhhcc-eEEEeccccc---CHHHHHHhccc-CCceee--cCceE
Confidence            35689999999999999999999999988876 5677788877   45699999998 998765  66654

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=98.88  E-value=1.9e-09  Score=89.90  Aligned_cols=77  Identities=18%  Similarity=0.227  Sum_probs=55.2

Q ss_pred             cCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCC--CchhHHHHHHH----------------------
Q 018973          137 AKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGD--ESEKTKELCER----------------------  190 (348)
Q Consensus       137 ~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d--~~~~~~~l~~~----------------------  190 (348)
                      .++|+|||+||++||++|+...+.+.++.+++.+  +.++.|.+|  +.++.++..++                      
T Consensus        54 ~kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  133 (176)
T d1jfua_          54 FRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKA  133 (176)
T ss_dssp             GTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHT
T ss_pred             hCCCEEEEEeccCcccchHHHHHhhhhccccccccccccccccccccchhhhhhhHhhhCCcceeeeecchhHHHHHHhh
Confidence            3789999999999999999999999999998754  566666554  33223333333                      


Q ss_pred             -cCcCCCCeEEEe-ecccccccccc
Q 018973          191 -EKIKKVPHFSFY-KSMEKIHEEEG  213 (348)
Q Consensus       191 -~~V~~~Pt~~~~-~~g~~v~~~~G  213 (348)
                       |++.++|+.+++ ++|+.+.++.|
T Consensus       134 ~~~v~~~P~~~lID~~G~I~~~~~G  158 (176)
T d1jfua_         134 IGRALGMPTSVLVDPQGCEIATIAG  158 (176)
T ss_dssp             TTCCSSSSEEEEECTTSBEEEEEES
T ss_pred             hccCCCCCeEEEEcCCCEEEEEEEC
Confidence             456667875544 56777777766

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.86  E-value=3.4e-09  Score=87.49  Aligned_cols=83  Identities=16%  Similarity=0.290  Sum_probs=63.7

Q ss_pred             hHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhC---CCCccceEEEE
Q 018973          241 DVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDM---NVVEVPTFLFI  317 (348)
Q Consensus       241 ~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~---~V~~~PTl~~~  317 (348)
                      +..+.++..  .++.+++.||++||++|+...|.|.++++.++ ++.+..|+.+++++   ..++|   +...+|+++++
T Consensus        44 ~~~~~l~~~--~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~-~~~~~~i~~d~~~~---~~~~~~~~~~~~~p~~~~~  117 (166)
T d1z6na1          44 ALTERLQRI--ERRYRLLVAGEMWCPDCQINLAALDFAQRLQP-NIELAIISKGRAED---DLRQRLALERIAIPLVLVL  117 (166)
T ss_dssp             HHHHHHHTC--CSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT-TEEEEEECHHHHHH---HTTTTTTCSSCCSSEEEEE
T ss_pred             HHHHHHHHh--cCCeEEEEEEeCcCccHHHHHHHHHHHHHHCC-CCcEEEEECccCHH---HHHHHHHhccccccceeec
Confidence            334444432  57889999999999999999999999999985 58888898887766   77777   44567776666


Q ss_pred             -eCCeEEEEEeCC
Q 018973          318 -RDGQIRGRYVGS  329 (348)
Q Consensus       318 -~~G~~v~~~~G~  329 (348)
                       .+++...++.+.
T Consensus       118 d~~~~~~~~~~~~  130 (166)
T d1z6na1         118 DEEFNLLGRFVER  130 (166)
T ss_dssp             CTTCCEEEEEESS
T ss_pred             Cccchhccccccc
Confidence             466777777665

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=4e-07  Score=75.98  Aligned_cols=92  Identities=17%  Similarity=0.228  Sum_probs=70.7

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCc-EEEEEEECCCc--------hhHHHHHHh------CCCC-------
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGT-VVFARMNGDEN--------DSCMQFLRD------MNVV-------  309 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~~~~--------~~~~~l~~~------~~V~-------  309 (348)
                      .+++++|.+||+||++|.+..+.|++|.++|+++ +.++.+-+++.        ++++++++.      |++.       
T Consensus        23 kGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~g~~Il~fP~nqF~~qE~~~~~ei~~f~~~~~~~~~~~~~f~~~~ki  102 (184)
T d2f8aa1          23 RGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKC  102 (184)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTTTCSCHHHHHHHHHHTSSCTTCCCSSEEBCCC
T ss_pred             CCCEEEEEEecccCCcchhhhHHHHHhhhhhcccceeEEEeeccccccccccchhhhhhhhheeccccccccccccceee
Confidence            5899999999999999999999999999999754 88888876542        244455542      2211       


Q ss_pred             -----------------------------ccc-----------------e-EEEEeCCeEEEEEeCC-ChHHHHHHHHHH
Q 018973          310 -----------------------------EVP-----------------T-FLFIRDGQIRGRYVGS-GKGELIGEILRY  341 (348)
Q Consensus       310 -----------------------------~~P-----------------T-l~~~~~G~~v~~~~G~-~~~~L~~~l~~~  341 (348)
                                                   +.|                 | |++.++|+++.|+.+. ++.+|.+.|+++
T Consensus       103 ~VnG~~a~ply~~Lk~~~~~~~~~~~~~~~~p~~~~~~~~~~~~i~WNFtKFLIdr~G~vv~rf~~~~~p~~i~~~Ie~l  182 (184)
T d2f8aa1         103 EVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEAL  182 (184)
T ss_dssp             CCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHH
T ss_pred             eecCCCCCHHHHHHHhhCCCCccccccccccccccccccccCCCccceEEEEEECCCCCEEEEECCCCCHHHHHHHHHHH
Confidence                                         111                 2 7888999999999988 888899999887


Q ss_pred             hC
Q 018973          342 QG  343 (348)
Q Consensus       342 ~~  343 (348)
                      ++
T Consensus       183 L~  184 (184)
T d2f8aa1         183 LS  184 (184)
T ss_dssp             HC
T ss_pred             hC
Confidence            63

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.47  E-value=2.6e-07  Score=75.11  Aligned_cols=77  Identities=12%  Similarity=0.147  Sum_probs=59.9

Q ss_pred             CcEEEEEEe-CCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHH------------------HHhCCCCccc-
Q 018973          253 QKLIVLDVG-LKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQF------------------LRDMNVVEVP-  312 (348)
Q Consensus       253 ~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l------------------~~~~~V~~~P-  312 (348)
                      ++.++++|| +.||+.|....+.+.+...++.+.+.++.|+.+.....+++                  +++||+...| 
T Consensus        33 ~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~~~~~~~is~d~~~~~~~f~~~~~l~f~~L~D~~~~v~~~ygv~~~~~  112 (156)
T d2a4va1          33 NRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYAAVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAKKTPL  112 (156)
T ss_dssp             CSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTCEEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHHHHHHTCBSSSS
T ss_pred             ccEEEEEecccccCcchhhhhHHHHHHHHHHhhccceeeeccchhhhHHhhhcccCccceeccchHHHHHHHcCCCcccc
Confidence            577777777 89999999999999999999987777888888765544444                  4456665544 


Q ss_pred             -----eEEEEeCCeEEEEEeCC
Q 018973          313 -----TFLFIRDGQIRGRYVGS  329 (348)
Q Consensus       313 -----Tl~~~~~G~~v~~~~G~  329 (348)
                           +++++.+|+++.++.|.
T Consensus       113 ~~~~r~~~i~~dg~i~~~~~~~  134 (156)
T d2a4va1         113 SGSIRSHFIFVDGKLKFKRVKI  134 (156)
T ss_dssp             SCBCCEEEEEETTEEEEEEESC
T ss_pred             CCeeEEEEEEECCeEEEEEEEe
Confidence                 56666899999999887

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=98.45  E-value=2.1e-07  Score=75.59  Aligned_cols=93  Identities=17%  Similarity=0.149  Sum_probs=67.3

Q ss_pred             CCcEEEEEEe-CCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchhHH------------------HHHHhCCCC--
Q 018973          252 DQKLIVLDVG-LKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDSCM------------------QFLRDMNVV--  309 (348)
Q Consensus       252 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~~~------------------~l~~~~~V~--  309 (348)
                      .+|+++|.|| +.||++|....+.+.++..++.+ .+.++.+..+.....+                  .+++.||+.  
T Consensus        29 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~  108 (160)
T d2cx4a1          29 RGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIKLYNVYHE  108 (160)
T ss_dssp             TSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTCCEEEEEESSCHHHHHHHHHHHTCSSEEEECTTSHHHHHTTCEEE
T ss_pred             CCCEEEEEecccccCCchhhhhhhhhcccccccccccccccccccchhhhhhhcccceeeEEEeecCCcchHHHcCcccc
Confidence            3688889988 99999999999999988888754 3777777766433222                  255567763  


Q ss_pred             --------ccce-EEEEeCCeEEEEEeCC------ChHHHHHHHHHHhCC
Q 018973          310 --------EVPT-FLFIRDGQIRGRYVGS------GKGELIGEILRYQGV  344 (348)
Q Consensus       310 --------~~PT-l~~~~~G~~v~~~~G~------~~~~L~~~l~~~~~~  344 (348)
                              ..|+ +++.++|+++..+.+.      +.+++.+.++++.|-
T Consensus       109 ~~~~~~~~~~~~~flId~~G~I~~~~~~~~~~~~~~~~eil~~l~~l~~e  158 (160)
T d2cx4a1         109 DLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIAGE  158 (160)
T ss_dssp             EETTEEEEECCEEEEECTTSBEEEEEECSSTTCCCCHHHHHHHHHHHHTT
T ss_pred             ccccccccceeeEEEEcCCCEEEEEEEeCCCCCCCCHHHHHHHHHHHccc
Confidence                    3574 5666899999887643      467788888877663

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=4e-07  Score=76.03  Aligned_cols=47  Identities=19%  Similarity=0.212  Sum_probs=41.2

Q ss_pred             HHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCCC
Q 018973          134 LRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGDE  180 (348)
Q Consensus       134 l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d~  180 (348)
                      |++.++|+|+|.++|+|||+|.+..+.|++|.++|.+  +.++.+-+++
T Consensus        19 L~~ykGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~g~~Il~fP~nq   67 (184)
T d2f8aa1          19 LGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQ   67 (184)
T ss_dssp             GGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCC
T ss_pred             HHHcCCCEEEEEEecccCCcchhhhHHHHHhhhhhcccceeEEEeeccc
Confidence            3445899999999999999999999999999999964  8888888775

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=98.24  E-value=3.5e-06  Score=59.14  Aligned_cols=70  Identities=11%  Similarity=0.204  Sum_probs=55.1

Q ss_pred             EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCCChHHHHH
Q 018973          257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIG  336 (348)
Q Consensus       257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~~~~~L~~  336 (348)
                      ++.|..++|++|.+....|.+    .  ++.|..+|++++++..++.+.+|..++|++.+  +|+.+   .|.+.++|.+
T Consensus         3 v~iYt~~~C~~C~~ak~~L~~----~--~i~~~~~~i~~~~~~~~~~~~~g~~tvP~i~i--~g~~i---gGf~~d~l~~   71 (74)
T d1r7ha_           3 ITLYTKPACVQCTATKKALDR----A--GLAYNTVDISLDDEARDYVMALGYVQAPVVEV--DGEHW---SGFRPERIKQ   71 (74)
T ss_dssp             EEEEECTTCHHHHHHHHHHHH----T--TCCCEEEETTTCHHHHHHHHHTTCBCCCEEEE--TTEEE---ESCCHHHHHH
T ss_pred             EEEEeCCCChhHHHHHHHHHH----c--CCceEEEEccCCHHHHHHHHHhCCCCcCEEEE--CCEEE---eCCCHhHHHH
Confidence            567899999999998766654    2  47888999999888788889999999998754  78654   4667777665


Q ss_pred             H
Q 018973          337 E  337 (348)
Q Consensus       337 ~  337 (348)
                      .
T Consensus        72 L   72 (74)
T d1r7ha_          72 L   72 (74)
T ss_dssp             H
T ss_pred             h
Confidence            3

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.24  E-value=2.2e-06  Score=70.06  Aligned_cols=90  Identities=16%  Similarity=0.167  Sum_probs=66.1

Q ss_pred             CCcEEEEEEe-CCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchhHH-------------------------HHHH
Q 018973          252 DQKLIVLDVG-LKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDSCM-------------------------QFLR  304 (348)
Q Consensus       252 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~~~-------------------------~l~~  304 (348)
                      .++++||+|| +.||+.|....+.|.++.+++.+ .+.++.|+.+......                         .+++
T Consensus        32 ~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~  111 (167)
T d1e2ya_          32 KGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEINTEVISCSCDSEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAIAR  111 (167)
T ss_dssp             TTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCCCSSCEEECTTCHHHH
T ss_pred             CCCeEEEEEcccccccccchhhHHHHHHHHHhhcCceEEEeecCCcHHhHHHHHhhHHHhcccccccccccccchhHHHH
Confidence            4789999999 99999999999999999999865 4888888876532211                         2555


Q ss_pred             hCCCC------ccc-eEEEEeCCeEEEEEeC-----CChHHHHHHHHHH
Q 018973          305 DMNVV------EVP-TFLFIRDGQIRGRYVG-----SGKGELIGEILRY  341 (348)
Q Consensus       305 ~~~V~------~~P-Tl~~~~~G~~v~~~~G-----~~~~~L~~~l~~~  341 (348)
                      .|++.      ..| |+++.++|+++..+.+     .+.+++.+.|+.+
T Consensus       112 ~y~v~~~~~g~~~r~tfvID~~G~Ir~~~~~~~~~~~~~~evL~~l~al  160 (167)
T d1e2ya_         112 AYGVLDEDSGVAYRGVFIIDPNGKLRQIIINDMPIGRNVEEVIRLVEAL  160 (167)
T ss_dssp             HHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HcCCCcccCCCceeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHH
Confidence            66662      245 5677789999877543     2557777777654

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.23  E-value=2.7e-06  Score=69.65  Aligned_cols=91  Identities=13%  Similarity=0.051  Sum_probs=67.8

Q ss_pred             CCcEEEEEEe-CCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchh----------------------HHHHHHhCC
Q 018973          252 DQKLIVLDVG-LKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDS----------------------CMQFLRDMN  307 (348)
Q Consensus       252 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~----------------------~~~l~~~~~  307 (348)
                      .++++||+|| +.||+.|....+.+.+..+++.+ .+.++.|..+....                      ..+++++||
T Consensus        43 ~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~g~~vv~is~d~~~~~~~~~~~~~~~~~~~f~ll~D~~~~v~~~yg  122 (169)
T d2bmxa1          43 PGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAG  122 (169)
T ss_dssp             TTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHT
T ss_pred             CCCeEEEEEecCCCCccccccccccccccccccccCcceeeccccchhhhhhhcccccccccceEEEEeccHHHHHHHcC
Confidence            5789999999 99999999999999999999864 48888888764322                      124677788


Q ss_pred             C-----Cccce-EEEEeCCeEEEEEeCC-----ChHHHHHHHHHHh
Q 018973          308 V-----VEVPT-FLFIRDGQIRGRYVGS-----GKGELIGEILRYQ  342 (348)
Q Consensus       308 V-----~~~PT-l~~~~~G~~v~~~~G~-----~~~~L~~~l~~~~  342 (348)
                      |     ...|+ +++.++|+++....+.     +.+++.+.|+.+.
T Consensus       123 v~~~~~~~~r~~fvID~~G~I~~~~~~~~~~~~~~~evl~~l~alq  168 (169)
T d2bmxa1         123 VLNADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDALQ  168 (169)
T ss_dssp             CBCTTSSBCEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             CCccCCccceeEEEEcCCCEEEEEEEcCCCCCCCHHHHHHHHHHhc
Confidence            7     55675 5555799998765432     4667877777653

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=98.22  E-value=1.3e-06  Score=70.66  Aligned_cols=45  Identities=20%  Similarity=0.095  Sum_probs=38.5

Q ss_pred             CCCEEEEEEe-CCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCCCch
Q 018973          138 KNKLVVVEFA-ASRSLDSSKIYPFMVDLSRQCND--VEFILVMGDESE  182 (348)
Q Consensus       138 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d~~~  182 (348)
                      ++|+|||.|| ++||++|....+.+.++.+++.+  +.++.+..|..+
T Consensus        29 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~   76 (160)
T d2cx4a1          29 RGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPW   76 (160)
T ss_dssp             TSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTCCEEEEEESSCHH
T ss_pred             CCCEEEEEecccccCCchhhhhhhhhcccccccccccccccccccchh
Confidence            5889999998 89999999999999999888865  788888877643

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.21  E-value=2.7e-06  Score=68.81  Aligned_cols=57  Identities=12%  Similarity=0.148  Sum_probs=47.6

Q ss_pred             CCCEEEEEEe-CCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcC
Q 018973          138 KNKLVVVEFA-ASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIK  194 (348)
Q Consensus       138 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~  194 (348)
                      +++.|++.|| +.||++|....+.|.+.++++.+ ..++.|..|..+..+++++++++.
T Consensus        32 k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~~~~~~~is~d~~~~~~~f~~~~~l~   90 (156)
T d2a4va1          32 NNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYAAVFGLSADSVTSQKKFQSKQNLP   90 (156)
T ss_dssp             HCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTCEEEEEESCCHHHHHHHHHHHTCS
T ss_pred             CccEEEEEecccccCcchhhhhHHHHHHHHHHhhccceeeeccchhhhHHhhhcccCcc
Confidence            4778888888 89999999999999999999866 678899998876677778887763

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.14  E-value=3.2e-06  Score=67.89  Aligned_cols=88  Identities=14%  Similarity=0.098  Sum_probs=60.6

Q ss_pred             cEEEE-EEeCCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchhHHH--------------------HHHhCCCC--
Q 018973          254 KLIVL-DVGLKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDSCMQ--------------------FLRDMNVV--  309 (348)
Q Consensus       254 k~vvV-~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~~~~--------------------l~~~~~V~--  309 (348)
                      +++++ .|++.||+.|....+.+.++.+++.+ ++.++.++.|..+..++                    +++.|++.  
T Consensus        30 ~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~~~~vi~vs~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ygv~~~  109 (153)
T d1xvwa1          30 KNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVFNE  109 (153)
T ss_dssp             CEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTTCEET
T ss_pred             CcEEEEecccccccchhhhhhhhhhhhhhhcccccccccccchhhhHHHHHhhhhccceeEEecccccchhHHHhhhhhh
Confidence            44444 45599999999999999988888854 48889988875443333                    55556663  


Q ss_pred             --cc--c-eEEEEeCCeEEEEEeCC-----ChHHHHHHHHHH
Q 018973          310 --EV--P-TFLFIRDGQIRGRYVGS-----GKGELIGEILRY  341 (348)
Q Consensus       310 --~~--P-Tl~~~~~G~~v~~~~G~-----~~~~L~~~l~~~  341 (348)
                        ++  | ||++.++|++.....+.     +.+++.+.|..+
T Consensus       110 ~~g~~~r~tfvID~~G~I~~~~~~~~~~~~~~~~~~~~L~aL  151 (153)
T d1xvwa1         110 QAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAAL  151 (153)
T ss_dssp             TTTEECSEEEEECTTSBEEEEEECCTTCCCCHHHHHHHHHHT
T ss_pred             ccCceeeeEEEECCCCEEEEEEEeCCCcccCHHHHHHHHHhh
Confidence              22  4 56777899998766532     466777766654

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=98.06  E-value=6.2e-06  Score=67.38  Aligned_cols=90  Identities=17%  Similarity=0.139  Sum_probs=66.0

Q ss_pred             CCcEEEEEEeCC-CChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchhHH----------------------HHHHhCC
Q 018973          252 DQKLIVLDVGLK-HCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDSCM----------------------QFLRDMN  307 (348)
Q Consensus       252 ~~k~vvV~F~a~-wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~~~----------------------~l~~~~~  307 (348)
                      .+|.+||+||.. ||++|....+.|.++.+++.+ .+.++.|..|.....+                      +++++||
T Consensus        30 ~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~g~~vv~IS~D~~~~~~~~~~~~~~~~~~~fpll~D~~~~v~~~yg  109 (166)
T d1we0a1          30 KGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFD  109 (166)
T ss_dssp             SSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTT
T ss_pred             CCCeEEEEEecccCCcHHHHHHHHHHHHHHhhcccceEEEecccccHHHHHHHhhhhhhhcccccccccCcccHHHHHhC
Confidence            578899999955 999999999999999999853 4888888887533212                      3566677


Q ss_pred             CC------ccc-eEEEEeCCeEEEEEeCC-----ChHHHHHHHHHH
Q 018973          308 VV------EVP-TFLFIRDGQIRGRYVGS-----GKGELIGEILRY  341 (348)
Q Consensus       308 V~------~~P-Tl~~~~~G~~v~~~~G~-----~~~~L~~~l~~~  341 (348)
                      +.      ..| ||++.++|+++....+.     +.+++.+.|+.+
T Consensus       110 v~~~~~~~~~r~tfvID~~G~I~~~~i~~~~~~r~~~eil~~lkal  155 (166)
T d1we0a1         110 VLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAA  155 (166)
T ss_dssp             CEETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHHHH
T ss_pred             CCccccCcccceEEEECCCCcEEEEEEcCCCCCCCHHHHHHHHHhc
Confidence            64      235 57777899998776543     456777776654

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.06  E-value=1.3e-05  Score=64.59  Aligned_cols=84  Identities=13%  Similarity=0.171  Sum_probs=62.2

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECC-------------------------------------
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGD-------------------------------------  294 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~-------------------------------------  294 (348)
                      +.+.+++.|..+.||+|+++.|.+.++.+.   ++.++.+..-                                     
T Consensus        25 ~ak~tIv~FsD~~CpyC~~~~~~l~~~~~~---~~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  101 (156)
T d1eeja1          25 QEKHVITVFTDITCGYCHKLHEQMADYNAL---GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPA  101 (156)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHTTHHHHHHT---TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCC
T ss_pred             CCCEEEEEEeCCCCHHHHHHHHHHHHhhcc---CceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHHHHhccccchh
Confidence            467889999999999999999999988654   3444444321                                     


Q ss_pred             ----CchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCC-ChHHHHHHHHHHh
Q 018973          295 ----ENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS-GKGELIGEILRYQ  342 (348)
Q Consensus       295 ----~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~  342 (348)
                          .-....++++++||+++||++ +.||+.+   .|. +.+.|.+.|++..
T Consensus       102 ~~~~~i~~~~~la~~lgv~GTPt~~-~~nG~~v---~G~~~~e~l~~~i~~~~  150 (156)
T d1eeja1         102 SCDVDIADHYALGVQLGVSGTPAVV-LSNGTLV---PGYQPPKEMKEFLDEHQ  150 (156)
T ss_dssp             CCSCCHHHHHHHHHHHTCCSSSEEE-CTTSCEE---ESCCCHHHHHHHHHHHH
T ss_pred             hhcchHHHHHHHHHHcCCcCCCEEE-EeCCeEe---cCCCCHHHHHHHHHHHH
Confidence                011233578889999999965 4678754   698 9999999998763

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=98.02  E-value=8.2e-06  Score=57.16  Aligned_cols=59  Identities=5%  Similarity=0.048  Sum_probs=49.2

Q ss_pred             EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeeccccc
Q 018973          143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKI  208 (348)
Q Consensus       143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~~v  208 (348)
                      |+.|..+||+.|.+....|++     .++.|..+|++++++..++.+++|.+.+|++.+  +|+.+
T Consensus         3 v~iYt~~~C~~C~~ak~~L~~-----~~i~~~~~~i~~~~~~~~~~~~~g~~tvP~i~i--~g~~i   61 (74)
T d1r7ha_           3 ITLYTKPACVQCTATKKALDR-----AGLAYNTVDISLDDEARDYVMALGYVQAPVVEV--DGEHW   61 (74)
T ss_dssp             EEEEECTTCHHHHHHHHHHHH-----TTCCCEEEETTTCHHHHHHHHHTTCBCCCEEEE--TTEEE
T ss_pred             EEEEeCCCChhHHHHHHHHHH-----cCCceEEEEccCCHHHHHHHHHhCCCCcCEEEE--CCEEE
Confidence            678999999999999988876     468888899998877788889999999998754  66544

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=98.01  E-value=5.4e-06  Score=58.54  Aligned_cols=67  Identities=12%  Similarity=0.219  Sum_probs=51.9

Q ss_pred             EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeeccccccccccCCCCcc
Q 018973          143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL  219 (348)
Q Consensus       143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~~v~~~~G~~~~~l  219 (348)
                      ++.|..+||+.|++....|++     .++.|..+|++++++..+..+..|.+.+|++++  +|+.+   .|.+++.+
T Consensus         3 i~iYs~~~C~~C~~ak~~L~~-----~~i~y~~~~i~~~~~~~~~~~~~g~~tvP~i~i--~~~~i---~Gf~~d~i   69 (76)
T d1h75a_           3 ITIYTRNDCVQCHATKRAMEN-----RGFDFEMINVDRVPEAAEALRAQGFRQLPVVIA--GDLSW---SGFRPDMI   69 (76)
T ss_dssp             EEEEECTTCHHHHHHHHHHHH-----TTCCCEEEETTTCHHHHHHHHHTTCCSSCEEEE--TTEEE---ESCCHHHH
T ss_pred             EEEEeCCCCccHHHHHHHHHh-----cCceeEEEeecCCHHHHHHHHhcCCCCCCEEEE--CCEEE---ECCCHHHH
Confidence            577899999999999988876     467888999998777667778889999999876  55433   44444443

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=98.01  E-value=1.2e-05  Score=56.68  Aligned_cols=68  Identities=13%  Similarity=0.125  Sum_probs=53.2

Q ss_pred             EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCCChHHHH
Q 018973          257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELI  335 (348)
Q Consensus       257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~~~~~L~  335 (348)
                      ++.|..+||++|.+....|.+.      .+.|..+|++++++..+..+..|.+++|++++  +|+.+   .|.+++.|.
T Consensus         3 i~iYs~~~C~~C~~ak~~L~~~------~i~y~~~~i~~~~~~~~~~~~~g~~tvP~i~i--~~~~i---~Gf~~d~i~   70 (76)
T d1h75a_           3 ITIYTRNDCVQCHATKRAMENR------GFDFEMINVDRVPEAAEALRAQGFRQLPVVIA--GDLSW---SGFRPDMIN   70 (76)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT------TCCCEEEETTTCHHHHHHHHHTTCCSSCEEEE--TTEEE---ESCCHHHHG
T ss_pred             EEEEeCCCCccHHHHHHHHHhc------CceeEEEeecCCHHHHHHHHhcCCCCCCEEEE--CCEEE---ECCCHHHHH
Confidence            5678899999999987666542      47889999999888777788899999999776  77543   576766654

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=97.97  E-value=8.4e-07  Score=72.59  Aligned_cols=46  Identities=9%  Similarity=-0.005  Sum_probs=40.4

Q ss_pred             cCCCEEEEEEe-CCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCch
Q 018973          137 AKNKLVVVEFA-ASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESE  182 (348)
Q Consensus       137 ~~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~  182 (348)
                      .++|+||+.|| +.||++|....|.|.+++.++.++.++.|..|...
T Consensus        42 ~~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~~~~vv~Is~d~~~   88 (164)
T d1qxha_          42 FAGKRKVLNIFPSIDTGVCAASVRKFNQLATEIDNTVVLCISADLPF   88 (164)
T ss_dssp             GTTSEEEEEECSCSCSSCCCHHHHHHHHHHHTSTTEEEEEEESSCHH
T ss_pred             hCCCeEEEEEecchhcccchHHHHHHHHHHHhhccceeeeEEcCCHH
Confidence            36889999888 67999999999999999999999999999988643

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.95  E-value=2.9e-05  Score=63.42  Aligned_cols=93  Identities=14%  Similarity=0.272  Sum_probs=64.5

Q ss_pred             CCcEEEEEEeCCCCh-hhhhhhhHHHHHHHHhC---CcEEEEEEECCCc----hhHHHHHHhCCCC--------------
Q 018973          252 DQKLIVLDVGLKHCG-PCVKVYPTVIKLSRQMA---GTVVFARMNGDEN----DSCMQFLRDMNVV--------------  309 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~-~C~~~~p~l~~la~~~~---~~v~~~~vd~~~~----~~~~~l~~~~~V~--------------  309 (348)
                      .+++++|+||.+||+ .|....+.+.++.+.+.   .++.++.|.+|-.    +..+++++.+++.              
T Consensus        30 ~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiDp~~Dtp~~l~~y~~~~~~~~~~w~~lt~~~~~~  109 (172)
T d1xzoa1          30 KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSE  109 (172)
T ss_dssp             TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCCCGGGEEEEBCSCHHH
T ss_pred             CCCEEEEEEecccccccccccchhhhhhhhhhccccccccccccccccccchHHHHHHHHHHhccccccceeeccchHHH
Confidence            589999999999997 69999999988877763   4577888876521    1223333333221              


Q ss_pred             -------------c----------cc-eEEEEeCCeEEEEEeCC---ChHHHHHHHHHHhCC
Q 018973          310 -------------E----------VP-TFLFIRDGQIRGRYVGS---GKGELIGEILRYQGV  344 (348)
Q Consensus       310 -------------~----------~P-Tl~~~~~G~~v~~~~G~---~~~~L~~~l~~~~~~  344 (348)
                                   .          .| ++++.++|+++..+.|.   ..++|.+.|+....+
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~g~~~~~~~~l~~dik~~~~~  171 (172)
T d1xzoa1         110 IEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVENTPYDDIISDVKSASTL  171 (172)
T ss_dssp             HHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESSSSCCHHHHHHHHHHHTCC
T ss_pred             HHHHHHhheeeEEeccCCCceEeeeeEEEEEcCCCeEEEEEcCCCCCCHHHHHHHHHHHHhc
Confidence                         1          13 35666899999999887   467888888776543

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.92  E-value=2.4e-05  Score=65.47  Aligned_cols=91  Identities=14%  Similarity=0.129  Sum_probs=69.4

Q ss_pred             CCcEEEEEEe-CCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchh-------------------------HHHHHH
Q 018973          252 DQKLIVLDVG-LKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDS-------------------------CMQFLR  304 (348)
Q Consensus       252 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~-------------------------~~~l~~  304 (348)
                      .+|++||+|| ++||+.|......|.++.+++.. .+.++.|+.|....                         ..++++
T Consensus        32 ~GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~g~~VlgIS~Ds~~s~~~~~~~~~~~~~~~~l~fpllsD~~~~v~~  111 (194)
T d1uula_          32 KGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMK  111 (194)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHH
T ss_pred             CCCeEEEEEEeCCccccchhhhhHHHhhhhhhccCceEEEEEecCchhhhhhhhhhhhhhccccCCCcceeeCCcchHHH
Confidence            4789999999 99999999999999999988854 48888888774221                         124777


Q ss_pred             hCCCC------ccc-eEEEEeCCeEEEEEe-----CCChHHHHHHHHHHh
Q 018973          305 DMNVV------EVP-TFLFIRDGQIRGRYV-----GSGKGELIGEILRYQ  342 (348)
Q Consensus       305 ~~~V~------~~P-Tl~~~~~G~~v~~~~-----G~~~~~L~~~l~~~~  342 (348)
                      .||+.      ..| ||++.++|++...+.     |.+.+++.+.|+.+.
T Consensus       112 ~ygv~~~~~~~~~R~tfvID~~G~I~~~~~~~~~~~r~~~E~Lr~l~alQ  161 (194)
T d1uula_         112 SYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAFQ  161 (194)
T ss_dssp             HHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HcCCeeccCCceEEEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHhh
Confidence            88883      245 788889999987753     236888888887653

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.91  E-value=3.3e-05  Score=63.01  Aligned_cols=84  Identities=13%  Similarity=0.180  Sum_probs=60.9

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCc--h--------------------------------
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN--D--------------------------------  297 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~--~--------------------------------  297 (348)
                      +.+.+|+.|+.+.||+|+.+.+.++++.+..  ++.+..++..-.  .                                
T Consensus        35 ~a~~tv~vF~D~~CP~C~~~~~~l~~l~~~~--~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~~~~~~~~~~~~~~  112 (169)
T d1v58a1          35 DAPVIVYVFADPFCPYCKQFWQQARPWVDSG--KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLNV  112 (169)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHTT--SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCCC
T ss_pred             CCCEEEEEEECCCCcchHHHHHHHHHHHhcc--ceeEEEEecccCCcchHHHHHHHHhhhCHHHHHHHHHHhhhcccccc
Confidence            3457789999999999999999999987764  577777765310  0                                


Q ss_pred             -------------hHHHHHHhCCCCccceEEEEe-CCeEEEEEeCC-ChHHHHHHH
Q 018973          298 -------------SCMQFLRDMNVVEVPTFLFIR-DGQIRGRYVGS-GKGELIGEI  338 (348)
Q Consensus       298 -------------~~~~l~~~~~V~~~PTl~~~~-~G~~v~~~~G~-~~~~L~~~l  338 (348)
                                   ...++++++||.++||+++.. +|+ ...+.|. +.+.|.+.|
T Consensus       113 ~~~~~~~~~~~i~~n~~~a~~~gi~gTPt~i~~~~~g~-~~~~~G~~~~~~l~~il  167 (169)
T d1v58a1         113 PANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENT-LQQAVGLPDQKTLNIIM  167 (169)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTE-EEEEESSCCHHHHHHHT
T ss_pred             cchhhHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCC-EEEecCCCCHHHHHHHh
Confidence                         012366678999999988865 554 5678899 777666543

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=5.1e-05  Score=60.35  Aligned_cols=92  Identities=17%  Similarity=0.248  Sum_probs=62.9

Q ss_pred             CCcEEEEEEeCCCCh-hhhhhhhHHHHHHHHhC-----CcEEEEEEECCCchh-------------------------HH
Q 018973          252 DQKLIVLDVGLKHCG-PCVKVYPTVIKLSRQMA-----GTVVFARMNGDENDS-------------------------CM  300 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~-~C~~~~p~l~~la~~~~-----~~v~~~~vd~~~~~~-------------------------~~  300 (348)
                      .+|+++|+||.+||+ .|....+.+.++.+.+.     ..+.+..+..+...+                         ..
T Consensus        19 ~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (160)
T d1wp0a1          19 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVD   98 (160)
T ss_dssp             TTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCTTTCCHHHHHHHHHTTCTTCEEEECCHHHHH
T ss_pred             CCCEEEEEEECCCCccccccchHHHHHHHHHhhcccccccccccccccCCCcccHHHHHHHHhhcCCCcccccCchHHhh
Confidence            589999999999997 69888888888776642     224444444432111                         12


Q ss_pred             HHHHhCCCCcc---------------ce-EEEEeCCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973          301 QFLRDMNVVEV---------------PT-FLFIRDGQIRGRYVGS-GKGELIGEILRYQG  343 (348)
Q Consensus       301 ~l~~~~~V~~~---------------PT-l~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~  343 (348)
                      .+.+.|++...               ++ +++.++|+++.++.+. +++++.+.|.+++.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~i~~~~~~~~~~~~i~~~I~~~lk  158 (160)
T d1wp0a1          99 QVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMR  158 (160)
T ss_dssp             HHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHHHT
T ss_pred             HHhhhhheeeecccCCCCCCceEeccceEEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence            34455665433               43 5666899999998777 88899999988764

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.90  E-value=1.4e-05  Score=64.02  Aligned_cols=84  Identities=13%  Similarity=0.143  Sum_probs=61.0

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCC------------------------------------
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDE------------------------------------  295 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~------------------------------------  295 (348)
                      +.+.+++.|....||+|+++.+.+.++.+.. ..+.++......                                    
T Consensus        25 ~ak~~I~~FsD~~CPyC~~~~~~l~~l~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~~~  103 (150)
T d1t3ba1          25 NEKHVVTVFMDITCHYCHLLHQQLKEYNDLG-ITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEVKT  103 (150)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHTTHHHHHHTT-EEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSCCC
T ss_pred             CCCEEEEEEECCCCHHHHHHhHHHHHHhccC-ceEEEEEecccccchhHHHHHHHHHHhhhHHHhhHhHhhhccccchhh
Confidence            4677888899999999999999999987653 223333322210                                    


Q ss_pred             ---chhHHHHHHhCCCCccceEEEEeCCeEEEEEeCC-ChHHHHHHHHH
Q 018973          296 ---NDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS-GKGELIGEILR  340 (348)
Q Consensus       296 ---~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~  340 (348)
                         -....++++++||+++||+++ .||+.   +.|. +.++|.+.|++
T Consensus       104 ~~~i~~~~~la~~lGv~GTPt~~~-~nG~~---i~G~~~~~~l~~~l~~  148 (150)
T d1t3ba1         104 PNIVKKHYELGIQFGVRGTPSIVT-STGEL---IGGYLKPADLLRALEE  148 (150)
T ss_dssp             SSHHHHHHHHHHHHTCCSSCEEEC-TTSCC---CCSCCCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhcCcCCCCEEEE-cCCcE---ecCCCCHHHHHHHHHh
Confidence               011335788899999999775 57864   4788 99999999876

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.88  E-value=4.6e-05  Score=58.33  Aligned_cols=74  Identities=18%  Similarity=0.210  Sum_probs=57.5

Q ss_pred             CCEEEEEEeC--CCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeecccccc-cccc
Q 018973          139 NKLVVVEFAA--SRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIH-EEEG  213 (348)
Q Consensus       139 ~k~vvV~F~a--~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~~v~-~~~G  213 (348)
                      .++|-+.++.  ..|+.|..+...+++++.--+.+.+...|.+..+ .++++++|+|...|+|.+..+|+... +|.|
T Consensus        21 ~~pV~l~~~~~~~~~~~~~e~~~ll~ela~lSdki~~~~~~~~~~e-~~~~~~~~~ver~Ps~~i~~~g~~~gIrF~G   97 (119)
T d1a8la1          21 VNPVKLIVFVRKDHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPE-GKELAKRYRIDRAPATTITQDGKDFGVRYFG   97 (119)
T ss_dssp             CSCEEEEEEECSSSCTTHHHHHHHHHHHHTTCTTEEEEEEETTSHH-HHHHHHHTTCCSSSEEEEEETTBCCSEEEES
T ss_pred             CCCEEEEEEecCCCchhHHHHHHHHHHHHhhCCCeEEEEeccCcch-hhhHHHhhccccCceEEEecCCcccceEEEe
Confidence            4566555554  5799999999999999988777888777776533 67899999999999999998876532 3444

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.86  E-value=3.3e-05  Score=62.35  Aligned_cols=90  Identities=18%  Similarity=0.145  Sum_probs=66.1

Q ss_pred             CCcEEEEEEe-CCCChhhhhhhhHHHHHHHHhC-CcEEEEEEECCCchhH-------------------------HHHHH
Q 018973          252 DQKLIVLDVG-LKHCGPCVKVYPTVIKLSRQMA-GTVVFARMNGDENDSC-------------------------MQFLR  304 (348)
Q Consensus       252 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~~~~~-------------------------~~l~~  304 (348)
                      .++++||+|| +.||+.|....+.+.+...++. ..+.++.|..+.....                         ..+++
T Consensus        25 ~Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~~~~vigIS~d~~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~~~~  104 (158)
T d1zyea1          25 KGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISR  104 (158)
T ss_dssp             TTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEeehhcCCccccchhhHHHhHHHhhcCCceEEeccCcCHHHHHHHHhhhHhhccccccccccccccccHHHH
Confidence            4689999999 9999999999999999988874 3477888877643221                         13666


Q ss_pred             hCCCCc------cc-eEEEEeCCeEEEEEeCC-----ChHHHHHHHHHH
Q 018973          305 DMNVVE------VP-TFLFIRDGQIRGRYVGS-----GKGELIGEILRY  341 (348)
Q Consensus       305 ~~~V~~------~P-Tl~~~~~G~~v~~~~G~-----~~~~L~~~l~~~  341 (348)
                      .||+..      .| |+++.++|+++....+.     +.+++.+.|+.+
T Consensus       105 ~ygv~~~~~g~~~R~tfvID~~G~I~~~~i~~~~~~~~~~EiL~~lkal  153 (158)
T d1zyea1         105 DYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAF  153 (158)
T ss_dssp             HTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             HHHhccccCCccccEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence            777753      33 67888999998765432     567888888754

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.86  E-value=4e-06  Score=68.47  Aligned_cols=67  Identities=13%  Similarity=0.058  Sum_probs=49.9

Q ss_pred             CCCEEEEEEe-CCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCCCchhHHHHHHHcCc----CCCCeEEEeec
Q 018973          138 KNKLVVVEFA-ASRSLDSSKIYPFMVDLSRQCND--VEFILVMGDESEKTKELCEREKI----KKVPHFSFYKS  204 (348)
Q Consensus       138 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d~~~~~~~l~~~~~V----~~~Pt~~~~~~  204 (348)
                      ++|+|||.|| ++||++|....+.|.++.+++.+  +.++.|+.|..+...+.+.+.+.    ..+|..++...
T Consensus        32 ~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~d~  105 (167)
T d1e2ya_          32 KGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEINTEVISCSCDSEYSHLQWTSVDRKKGGLGPMAIPMLADK  105 (167)
T ss_dssp             TTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCCCSSCEEECT
T ss_pred             CCCeEEEEEcccccccccchhhHHHHHHHHHhhcCceEEEeecCCcHHhHHHHHhhHHHhcccccccccccccc
Confidence            6889999999 99999999999999999999864  88899998875544445544332    23455444443

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=97.85  E-value=2.2e-05  Score=64.27  Aligned_cols=89  Identities=12%  Similarity=0.129  Sum_probs=64.3

Q ss_pred             CcEEEEEEe-CCCChhhhhhhhHHHHHHHHhC-CcEEEEEEECCCchh-------------------------HHHHHHh
Q 018973          253 QKLIVLDVG-LKHCGPCVKVYPTVIKLSRQMA-GTVVFARMNGDENDS-------------------------CMQFLRD  305 (348)
Q Consensus       253 ~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~~~~-------------------------~~~l~~~  305 (348)
                      +++++++|| +.||+.|....+.+.+...++. ..+.++.|+.+....                         ..++.+.
T Consensus        33 k~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~Vvgis~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~v~~~  112 (170)
T d1zofa1          33 KNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRD  112 (170)
T ss_dssp             SSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHHH
T ss_pred             CCEEEEEEEccccCCcCHHHHHHHHHhHHhhccCCeeEecccccchhhHHHHHhhhhhcccccCcccccccccccHHHHH
Confidence            568999999 9999999999999988888874 348888888764321                         1246777


Q ss_pred             CCCC-----ccc-eEEEEeCCeEEEEEeCC-----ChHHHHHHHHHH
Q 018973          306 MNVV-----EVP-TFLFIRDGQIRGRYVGS-----GKGELIGEILRY  341 (348)
Q Consensus       306 ~~V~-----~~P-Tl~~~~~G~~v~~~~G~-----~~~~L~~~l~~~  341 (348)
                      ||+.     ..| |+++.++|+++....+.     +.+++.+.|+.+
T Consensus       113 ygv~~~~~~~~r~tfvID~~G~I~~~~~~~~~~~~~~~eiL~~l~aL  159 (170)
T d1zofa1         113 YDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDAL  159 (170)
T ss_dssp             TTCEETTTEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHHH
T ss_pred             cCCCccccceeEEEEEEcCCCeEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence            8873     346 67888999998655432     466666666554

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=97.84  E-value=2.1e-05  Score=64.12  Aligned_cols=91  Identities=12%  Similarity=0.153  Sum_probs=66.7

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECC--Cchh-------------------------------
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGD--ENDS-------------------------------  298 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~--~~~~-------------------------------  298 (348)
                      +.++.||.|..-.|++|+.+.+.+.++.+++.+.+.+......  ..+.                               
T Consensus        17 ~~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (181)
T d1beda_          17 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHVSFMGGNMGQAMSKAYATMIALEVEDKMVPVMFNRIHTL   96 (181)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEEECSSSSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred             CCCCEEEEEECCCCccchhhhhhhhhHhhhcccccceeEEeccccccccHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence            4677889999999999999999999999998766666655442  1110                               


Q ss_pred             ---------------------------------------HHHHHHhCCCCccceEEEEeCCeEEEEEeCC-ChHHHHHHH
Q 018973          299 ---------------------------------------CMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS-GKGELIGEI  338 (348)
Q Consensus       299 ---------------------------------------~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~-~~~~L~~~l  338 (348)
                                                             ..+.++++||+++||+++  +|+-+....|. +.++|.+.|
T Consensus        97 ~~~~~~~~~l~~~~~~~gvd~~~~~~~~~~~~~~~~v~~~~~~~~~~gi~gTPt~~I--nGk~~v~~~~~~~~~~l~~~i  174 (181)
T d1beda_          97 RKPPKDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVRRFDKQFQDSGLTGVPAVVV--NNRYLVQGQSVKSLDEYFDLV  174 (181)
T ss_dssp             CCCCCSHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTTEEECGGGCCSHHHHHHHH
T ss_pred             ccccchHHHHHHHHHHhcCCHHHHHHHHhChHHHHHHHHHHHHHHHhCCccccEEEE--CCEEeeCCCCCCCHHHHHHHH
Confidence                                                   001333479999999998  89855555666 888898888


Q ss_pred             HHHhCC
Q 018973          339 LRYQGV  344 (348)
Q Consensus       339 ~~~~~~  344 (348)
                      +.+++.
T Consensus       175 ~~L~~~  180 (181)
T d1beda_         175 NYLLTL  180 (181)
T ss_dssp             HHHHHC
T ss_pred             HHHHhC
Confidence            877643

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.83  E-value=9e-05  Score=56.68  Aligned_cols=88  Identities=18%  Similarity=0.241  Sum_probs=65.6

Q ss_pred             CcEEEEEEeC--CCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEE-EEEeCC
Q 018973          253 QKLIVLDVGL--KHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIR-GRYVGS  329 (348)
Q Consensus       253 ~k~vvV~F~a--~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v-~~~~G~  329 (348)
                      .++|-+.++.  ..|+.|..+...+++++.- .+++.+...+.+..+ ..+++++|+|...||+++..+|+.. -+|.|.
T Consensus        21 ~~pV~l~~~~~~~~~~~~~e~~~ll~ela~l-Sdki~~~~~~~~~~e-~~~~~~~~~ver~Ps~~i~~~g~~~gIrF~Gi   98 (119)
T d1a8la1          21 VNPVKLIVFVRKDHCQYCDQLKQLVQELSEL-TDKLSYEIVDFDTPE-GKELAKRYRIDRAPATTITQDGKDFGVRYFGL   98 (119)
T ss_dssp             CSCEEEEEEECSSSCTTHHHHHHHHHHHHTT-CTTEEEEEEETTSHH-HHHHHHHTTCCSSSEEEEEETTBCCSEEEESC
T ss_pred             CCCEEEEEEecCCCchhHHHHHHHHHHHHhh-CCCeEEEEeccCcch-hhhHHHhhccccCceEEEecCCcccceEEEec
Confidence            4555444443  5799999999999998765 467888888876533 2458999999999999999888653 378888


Q ss_pred             -ChHHHHHHHHHHh
Q 018973          330 -GKGELIGEILRYQ  342 (348)
Q Consensus       330 -~~~~L~~~l~~~~  342 (348)
                       .-.++..+|...+
T Consensus        99 P~GhEf~SlilaIl  112 (119)
T d1a8la1          99 PAGHEFAAFLEDIV  112 (119)
T ss_dssp             CCTTHHHHHHHHHH
T ss_pred             cCchhHHHHHHHHH
Confidence             6667777776553

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=97.82  E-value=6.2e-05  Score=64.74  Aligned_cols=91  Identities=15%  Similarity=0.108  Sum_probs=67.8

Q ss_pred             CCcEEEEEEe-CCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchh------------------------HHHHHHh
Q 018973          252 DQKLIVLDVG-LKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDS------------------------CMQFLRD  305 (348)
Q Consensus       252 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~------------------------~~~l~~~  305 (348)
                      .++.+|++|| ++||+.|....+.+.++.+++.+ .+.++.|.+|....                        ..++++.
T Consensus        28 kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~g~~vigiS~Ds~~sh~~w~~~~~~~~~~~l~fpllsD~~~~vak~  107 (237)
T d2zcta1          28 QGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARR  107 (237)
T ss_dssp             TTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHHCCCCCSCEEECGGGHHHHH
T ss_pred             CCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccCCcceeeccCCcHHHHHHHhhhhhhhcccccccccccCcchHHHHH
Confidence            4788889998 99999999999999988888853 48888888774221                        2247777


Q ss_pred             CCC-------Cccc-eEEEEeCCeEEEEEeC-----CChHHHHHHHHHHh
Q 018973          306 MNV-------VEVP-TFLFIRDGQIRGRYVG-----SGKGELIGEILRYQ  342 (348)
Q Consensus       306 ~~V-------~~~P-Tl~~~~~G~~v~~~~G-----~~~~~L~~~l~~~~  342 (348)
                      ||+       ...| ||++..+|++...+.+     .+.+++.+.|+.+.
T Consensus       108 yGv~~~~~~~~~~RatFIIDpdG~Ir~~~~~~~~~gR~~dEiLr~l~aLQ  157 (237)
T d2zcta1         108 LGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKALK  157 (237)
T ss_dssp             TTCC----CCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHHHH
T ss_pred             cCCccccccccceeeeEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHHh
Confidence            887       3568 4666689998776543     36788888887653

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=97.79  E-value=5.2e-06  Score=67.89  Aligned_cols=73  Identities=16%  Similarity=0.034  Sum_probs=53.4

Q ss_pred             hcCCCEEEEEEeCC-CCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchhHHHHHHHcCc-CCCCeEEEeeccccc
Q 018973          136 LAKNKLVVVEFAAS-RSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEKTKELCEREKI-KKVPHFSFYKSMEKI  208 (348)
Q Consensus       136 ~~~~k~vvV~F~a~-wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~~~~l~~~~~V-~~~Pt~~~~~~g~~v  208 (348)
                      +.++|.|||.||.. ||++|....+.|.++.+++.  ++.++.|..|..+.+.+.++++.. ..+|.-++......+
T Consensus        28 d~~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~g~~vv~IS~D~~~~~~~~~~~~~~~~~~~fpll~D~~~~v  104 (166)
T d1we0a1          28 DLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTI  104 (166)
T ss_dssp             TTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHH
T ss_pred             HhCCCeEEEEEecccCCcHHHHHHHHHHHHHHhhcccceEEEecccccHHHHHHHhhhhhhhcccccccccCcccHH
Confidence            34789999999966 99999999999999999984  599999999985555556665532 245554444433333

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.78  E-value=1.5e-05  Score=64.81  Aligned_cols=61  Identities=13%  Similarity=0.015  Sum_probs=50.1

Q ss_pred             cCCCEEEEEEe-CCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCC
Q 018973          137 AKNKLVVVEFA-ASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVP  197 (348)
Q Consensus       137 ~~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~P  197 (348)
                      .+++.+||.|| +.||+.|....+.|.+..+++.++.++.|..|......+..++.+....+
T Consensus        40 ~~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~~~~vv~Is~d~~~~~~~~~~~~~~~~~~  101 (163)
T d1psqa_          40 FDGKKKVLSVVPSIDTGICSTQTRRFNEELAGLDNTVVLTVSMDLPFAQKRWCGAEGLDNAI  101 (163)
T ss_dssp             GTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCTTEEEEEEESSCHHHHHHHHHHHTCTTSE
T ss_pred             hCCcEEEEEeccccccccchhhHHHHHHHHHhhcccceEEEEeccHHHHHHHHHHcCCccee
Confidence            37889999998 77999999999999999999989999999988765556666676665443

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=97.77  E-value=4.5e-05  Score=61.84  Aligned_cols=77  Identities=14%  Similarity=0.136  Sum_probs=56.0

Q ss_pred             CCcEEEEEEe-CCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch--------------------hHHHHHHhCCCC-
Q 018973          252 DQKLIVLDVG-LKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND--------------------SCMQFLRDMNVV-  309 (348)
Q Consensus       252 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~--------------------~~~~l~~~~~V~-  309 (348)
                      .+|++||.|| +.||+.|....+.|.++..++. .+.++.|..+...                    ...++++.||+. 
T Consensus        43 ~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~-~~~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ygv~~  121 (164)
T d1qxha_          43 AGKRKVLNIFPSIDTGVCAASVRKFNQLATEID-NTVVLCISADLPFAQSRFCGAEGLNNVITLSTFRNAEFLQAYGVAI  121 (164)
T ss_dssp             TTSEEEEEECSCSCSSCCCHHHHHHHHHHHTST-TEEEEEEESSCHHHHTTCCSSTTCTTEEEEECTTCHHHHHHTTCBB
T ss_pred             CCCeEEEEEecchhcccchHHHHHHHHHHHhhc-cceeeeEEcCCHHHHHHHHHHhCCCcceeeccccchhhHHhcCeEe
Confidence            4788888888 7799999999999999988885 4788888765211                    123477888873 


Q ss_pred             ------c--cc-eEEEEeCCeEEEEEeCC
Q 018973          310 ------E--VP-TFLFIRDGQIRGRYVGS  329 (348)
Q Consensus       310 ------~--~P-Tl~~~~~G~~v~~~~G~  329 (348)
                            +  .| ++++.++|++++...+.
T Consensus       122 ~~~~~~g~~~ra~fvID~~G~I~y~~~~~  150 (164)
T d1qxha_         122 ADGPLKGLAARAVVVIDENDNVIFSQLVD  150 (164)
T ss_dssp             CSSTTTTSBCCEEEEECTTSBEEEEEECS
T ss_pred             ecCcccCcccCEEEEEcCCCEEEEEEEcC
Confidence                  2  25 46666899998765443

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.77  E-value=4.4e-05  Score=61.84  Aligned_cols=88  Identities=19%  Similarity=0.088  Sum_probs=59.8

Q ss_pred             CCcEEEEEEe-CCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHH--------------------HHHHhCCCCc
Q 018973          252 DQKLIVLDVG-LKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCM--------------------QFLRDMNVVE  310 (348)
Q Consensus       252 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~--------------------~l~~~~~V~~  310 (348)
                      .+++++|.|| +.||+.|....+.+.+...++. .+.++.|..+.....+                    .+.+.||+..
T Consensus        41 ~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~-~~~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ygv~~  119 (163)
T d1psqa_          41 DGKKKVLSVVPSIDTGICSTQTRRFNEELAGLD-NTVVLTVSMDLPFAQKRWCGAEGLDNAIMLSDYFDHSFGRDYALLI  119 (163)
T ss_dssp             TTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCT-TEEEEEEESSCHHHHHHHHHHHTCTTSEEEECTTTCHHHHHHTCBC
T ss_pred             CCcEEEEEeccccccccchhhHHHHHHHHHhhc-ccceEEEEeccHHHHHHHHHHcCCcceeeeccccchhHHHhheeec
Confidence            4788888888 7899999999999988877775 4788888877433222                    2555566532


Q ss_pred             ----cc---eEEEEeCCeEEEEEeCC------ChHHHHHHHHH
Q 018973          311 ----VP---TFLFIRDGQIRGRYVGS------GKGELIGEILR  340 (348)
Q Consensus       311 ----~P---Tl~~~~~G~~v~~~~G~------~~~~L~~~l~~  340 (348)
                          +|   |+++.++|++++...+.      +.+++.+.+++
T Consensus       120 ~~~~~~~Ra~fvID~~G~I~y~~~~~~~~~~~~~~~il~alk~  162 (163)
T d1psqa_         120 NEWHLLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKA  162 (163)
T ss_dssp             TTTCSBCCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHH
T ss_pred             ccccceeEEEEEECCCCEEEEEEEcCCCCCCCCHHHHHHHHhc
Confidence                22   47777899998765433      23455555543

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.76  E-value=7.9e-06  Score=66.78  Aligned_cols=73  Identities=14%  Similarity=0.051  Sum_probs=54.1

Q ss_pred             hcCCCEEEEEEe-CCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchhHHHHHHHcCc-CCCCeEEEeeccccc
Q 018973          136 LAKNKLVVVEFA-ASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEKTKELCEREKI-KKVPHFSFYKSMEKI  208 (348)
Q Consensus       136 ~~~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~~~~l~~~~~V-~~~Pt~~~~~~g~~v  208 (348)
                      +.++|.+|+.|| +.||++|....+.|.++.+++.  ++.++.|..|......+.++.++- ..+|.-++......+
T Consensus        41 d~~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~g~~vv~is~d~~~~~~~~~~~~~~~~~~~f~ll~D~~~~v  117 (169)
T d2bmxa1          41 EHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKREL  117 (169)
T ss_dssp             SSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHH
T ss_pred             HHCCCeEEEEEecCCCCccccccccccccccccccccCcceeeccccchhhhhhhcccccccccceEEEEeccHHHH
Confidence            347899999999 9999999999999999999885  489999999986656666666643 334443334333333

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=97.72  E-value=5.3e-05  Score=59.11  Aligned_cols=107  Identities=6%  Similarity=0.081  Sum_probs=81.0

Q ss_pred             ceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCC--C
Q 018973          232 AVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNV--V  309 (348)
Q Consensus       232 ~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V--~  309 (348)
                      +++.--+.+++......    +++.++.|+... .........+.++|+++++++.|+.+|.+++..   .++.||+  .
T Consensus         6 PLv~e~~~~n~~~~~~~----~~pl~~lf~~~~-~~~~~~~~~~~~vA~~~~~ki~Fv~vd~~~~~~---~l~~~gl~~~   77 (133)
T d2djka1           6 PLIGEIGPETYSDYMSA----GIPLAYIFAETA-EERKELSDKLKPIAEAQRGVINFGTIDAKAFGA---HAGNLNLKTD   77 (133)
T ss_dssp             CCSEECCHHHHHHHHHT----TSCEEEEECSCS-SSHHHHHHHHHHHHHSSTTTSEEEEECTTTTGG---GTTTTTCCSS
T ss_pred             CceeccChhhHHHHhcC----CCCEEEEEeCCc-hHHHHHHHHHHHHHHHhcCceEEEEEeHHHhHH---HHHHhcCCcc
Confidence            44555567888887763    678888888764 456788889999999999999999999998877   7888898  5


Q ss_pred             ccceEEEEe-CCeEEEEE--eCC-ChHHHHHHHHHHhCCCC
Q 018973          310 EVPTFLFIR-DGQIRGRY--VGS-GKGELIGEILRYQGVRV  346 (348)
Q Consensus       310 ~~PTl~~~~-~G~~v~~~--~G~-~~~~L~~~l~~~~~~~~  346 (348)
                      .+|.++++. +++....+  .+. +.+.|.+|+++++.-++
T Consensus        78 ~~P~~~i~~~~~~~~~~~~~~~~i~~~~i~~Fi~d~~~Gkl  118 (133)
T d2djka1          78 KFPAFAIQEVAKNQKFPFDQEKEITFEAIKAFVDDFVAGKI  118 (133)
T ss_dssp             SSSEEEEECTTTCCBCCCCSSSCCCHHHHHHHHHHHHHTCC
T ss_pred             cCCcEEEEEcCCCceecCCccccCCHHHHHHHHHHHHcCCC
Confidence            689888874 33333333  344 89999999999875554

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=97.70  E-value=4.2e-05  Score=54.94  Aligned_cols=78  Identities=17%  Similarity=0.189  Sum_probs=54.9

Q ss_pred             EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhH-HHHHHhC--CCCccceEEEEeCCeEEEEEeCCChHH
Q 018973          257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSC-MQFLRDM--NVVEVPTFLFIRDGQIRGRYVGSGKGE  333 (348)
Q Consensus       257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~-~~l~~~~--~V~~~PTl~~~~~G~~v~~~~G~~~~~  333 (348)
                      +|.|..++|++|.+....|.++..++.+ +.+..+|++..++. +++.+..  +++.+|.+.+  +|+.+   .|.  ++
T Consensus         3 vviysk~~Cp~C~~aK~ll~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~tvPqIfi--~g~~I---GG~--~e   74 (85)
T d1egoa_           3 TVIFGRSGCPYCVRAKDLAEKLSNERDD-FQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFV--DQQHI---GGY--TD   74 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHSS-CEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEEE--TTEEE---ESS--HH
T ss_pred             EEEEeCCCCHhHHHHHHHHHHcCCCCCC-ceEEEEecCCCHHHHHHHHHHhcCCCCCCCEEEE--CCEEE---ECH--HH
Confidence            6778999999999999999998888754 78888887654422 2244443  3567898765  88755   355  45


Q ss_pred             HHHHHHHHh
Q 018973          334 LIGEILRYQ  342 (348)
Q Consensus       334 L~~~l~~~~  342 (348)
                      |.+++++.+
T Consensus        75 l~~~~~~~~   83 (85)
T d1egoa_          75 FAAWVKENL   83 (85)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhcC
Confidence            777766543

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.64  E-value=0.00016  Score=58.26  Aligned_cols=84  Identities=20%  Similarity=0.209  Sum_probs=61.6

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhC--CcEEEEEEECCCchh-------------------------------
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMA--GTVVFARMNGDENDS-------------------------------  298 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~--~~v~~~~vd~~~~~~-------------------------------  298 (348)
                      +.+..|+.|+...||+|+++.+.+.++.+++.  .++.++.+.....+.                               
T Consensus        23 ~a~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (172)
T d1z6ma1          23 NAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLFDKEKESLQRGNVMHHYIDYSAPEQALSALHKMFATQ  102 (172)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEECCCCSTTTHHHHHHHTTCCTTCHHHHHHHHHHHHHTH
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHhhhhhhhccccceeeeeccccccchhhHHHHHHHHHHHHccchhHHHHHHHHHHhc
Confidence            35677999999999999999999999988874  346666555431100                               


Q ss_pred             --------------------------------HHHHHHhCCCCccceEEEEeCCeEEEEEeCC-ChHHHHHHHHH
Q 018973          299 --------------------------------CMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS-GKGELIGEILR  340 (348)
Q Consensus       299 --------------------------------~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~  340 (348)
                                                      ..+.++++||+++||+++  ||+.   +.|. +.++|.+.|++
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~gI~gTPt~~I--ng~~---~~g~~~~~~~~~~id~  172 (172)
T d1z6ma1         103 DEWGNLTLEEVATYAEKNLGLKEQKDATLVSAVIAEANAAHIQFVPTIII--GEYI---FDESVTEEELRGYIEK  172 (172)
T ss_dssp             HHHTTSCHHHHHHHHHHTSCCCCCCCHHHHHHHHHHHHHHTCCSSCEEEE--TTEE---ECTTCCHHHHHHHHTC
T ss_pred             cccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHcCCCcCCEEEE--CCEE---ecCCCCHHHHHHHHcC
Confidence                                            012344589999999887  8875   4688 99999998864

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.61  E-value=6.3e-05  Score=60.04  Aligned_cols=70  Identities=16%  Similarity=0.102  Sum_probs=51.8

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCC-------------------------------------
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE-------------------------------------  180 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~-------------------------------------  180 (348)
                      ..+.+|+.|+=..||.|+++.+.++++.+....+.++......                                     
T Consensus        25 ~ak~~I~~FsD~~CPyC~~~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~~~~  104 (150)
T d1t3ba1          25 NEKHVVTVFMDITCHYCHLLHQQLKEYNDLGITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEVKTP  104 (150)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHTTHHHHHHTTEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSCCCS
T ss_pred             CCCEEEEEEECCCCHHHHHHhHHHHHHhccCceEEEEEecccccchhHHHHHHHHHHhhhHHHhhHhHhhhccccchhhh
Confidence            3678899999999999999999999998866544444332211                                     


Q ss_pred             --chhHHHHHHHcCcCCCCeEEEeeccccc
Q 018973          181 --SEKTKELCEREKIKKVPHFSFYKSMEKI  208 (348)
Q Consensus       181 --~~~~~~l~~~~~V~~~Pt~~~~~~g~~v  208 (348)
                        ..+..++++++||+++||+++ .||+.+
T Consensus       105 ~~i~~~~~la~~lGv~GTPt~~~-~nG~~i  133 (150)
T d1t3ba1         105 NIVKKHYELGIQFGVRGTPSIVT-STGELI  133 (150)
T ss_dssp             SHHHHHHHHHHHHTCCSSCEEEC-TTSCCC
T ss_pred             hHHHHHHHHHHhcCcCCCCEEEE-cCCcEe
Confidence              023467899999999999875 456543

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.60  E-value=3.2e-05  Score=61.77  Aligned_cols=55  Identities=9%  Similarity=-0.008  Sum_probs=44.9

Q ss_pred             CEEEEE-EeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCCCchhHHHHHHHcCcC
Q 018973          140 KLVVVE-FAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGDESEKTKELCEREKIK  194 (348)
Q Consensus       140 k~vvV~-F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d~~~~~~~l~~~~~V~  194 (348)
                      ++||+. |++.||++|....+.+.++.+++.+  +.++.|..|..+..++.++++++.
T Consensus        30 ~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~~~~vi~vs~d~~~~~~~~~~~~~~~   87 (153)
T d1xvwa1          30 KNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFT   87 (153)
T ss_dssp             CEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCC
T ss_pred             CcEEEEecccccccchhhhhhhhhhhhhhhcccccccccccchhhhHHHHHhhhhccc
Confidence            455555 4589999999999999999988864  899999999877777788888775

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=97.57  E-value=1.5e-05  Score=64.89  Aligned_cols=63  Identities=11%  Similarity=0.076  Sum_probs=49.1

Q ss_pred             cCCCEEEEEEeCC-CCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeE
Q 018973          137 AKNKLVVVEFAAS-RSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHF  199 (348)
Q Consensus       137 ~~~k~vvV~F~a~-wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~  199 (348)
                      .++|++|+.||.. ||+.|....+.|.+..+++.++.++.|..|.....+..++++++..++.+
T Consensus        40 ~~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~~~~vi~iS~d~~~~~~~~~~~~~~~~~~~~  103 (164)
T d1q98a_          40 FASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLSNTIVLCISADLPFAQARFCGAEGIENAKTV  103 (164)
T ss_dssp             GTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHSTTEEEEEEESSCHHHHTTCTTTTTCTTEEEE
T ss_pred             hCCcEEEEEecCccccCcccHHHHHHHHHHHHhccceEEeecCCcHHHHHHHHHHhCCcccccc
Confidence            3678999999955 77779999999999999999999999999875555555666666544433

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.57  E-value=6.8e-05  Score=60.20  Aligned_cols=70  Identities=13%  Similarity=0.104  Sum_probs=50.1

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCC--------------------------------------
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGD--------------------------------------  179 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d--------------------------------------  179 (348)
                      ..+.+|+.|+-..|++|+++.|.++++.+.+..+.+...-..                                      
T Consensus        25 ~ak~tIv~FsD~~CpyC~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (156)
T d1eeja1          25 QEKHVITVFTDITCGYCHKLHEQMADYNALGITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPASCD  104 (156)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHTTHHHHHHTTEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCCCCS
T ss_pred             CCCEEEEEEeCCCCHHHHHHHHHHHHhhccCceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHHHHhccccchhhhc
Confidence            368899999999999999999999999765433333222111                                      


Q ss_pred             -CchhHHHHHHHcCcCCCCeEEEeeccccc
Q 018973          180 -ESEKTKELCEREKIKKVPHFSFYKSMEKI  208 (348)
Q Consensus       180 -~~~~~~~l~~~~~V~~~Pt~~~~~~g~~v  208 (348)
                       ...+..++++++||+++||++ +.||+.+
T Consensus       105 ~~i~~~~~la~~lgv~GTPt~~-~~nG~~v  133 (156)
T d1eeja1         105 VDIADHYALGVQLGVSGTPAVV-LSNGTLV  133 (156)
T ss_dssp             CCHHHHHHHHHHHTCCSSSEEE-CTTSCEE
T ss_pred             chHHHHHHHHHHcCCcCCCEEE-EeCCeEe
Confidence             012456889999999999965 4567644

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.55  E-value=0.00021  Score=49.93  Aligned_cols=71  Identities=17%  Similarity=0.392  Sum_probs=54.7

Q ss_pred             EEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCC--ChHHHH
Q 018973          258 LDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS--GKGELI  335 (348)
Q Consensus       258 V~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~--~~~~L~  335 (348)
                      |.+.++.|..|.++....++++++++-...+.++  ++.++   +. +|||-++|.+++  ||+.+  +.|.  +.+++.
T Consensus         4 IkVlg~gC~~C~~~~~~v~~a~~e~gi~a~v~kv--~d~~e---i~-~ygVmstPalvI--dg~vv--~~G~vPs~~ei~   73 (77)
T d1iloa_           4 IQIYGTGCANCQMLEKNAREAVKELGIDAEFEKI--KEMDQ---IL-EAGLTALPGLAV--DGELK--IMGRVASKEEIK   73 (77)
T ss_dssp             EEEECSSSSTTHHHHHHHHHHHHHTTCCEEEEEE--CSHHH---HH-HHTCSSSSCEEE--TTEEE--ECSSCCCHHHHH
T ss_pred             EEEeCCCCccHHHHHHHHHHHHHHcCCceEEEEe--CCHHH---HH-HcCCcCCCEEEE--CCEEE--EEecCCCHHHHH
Confidence            4455899999999999999999988645666555  33333   66 599999999988  88865  4675  889998


Q ss_pred             HHH
Q 018973          336 GEI  338 (348)
Q Consensus       336 ~~l  338 (348)
                      ++|
T Consensus        74 ~~L   76 (77)
T d1iloa_          74 KIL   76 (77)
T ss_dssp             HHC
T ss_pred             HHh
Confidence            875

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=97.52  E-value=0.00012  Score=50.95  Aligned_cols=59  Identities=12%  Similarity=0.101  Sum_probs=46.3

Q ss_pred             EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeeccccc
Q 018973          143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKI  208 (348)
Q Consensus       143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~~v  208 (348)
                      |+.|..++|+.|+++...|++.     ++.|..+|+++.+....+.+..+.+.+|.+.+  +|+.+
T Consensus         7 I~iYs~~~C~~C~~ak~lL~~~-----~i~~~~~~v~~~~~~~~~~~~~~~~tvP~i~i--~g~~I   65 (74)
T d1nm3a1           7 ISIFTKPGCPFCAKAKQLLHDK-----GLSFEEIILGHDATIVSVRAVSGRTTVPQVFI--GGKHI   65 (74)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH-----TCCCEEEETTTTCCHHHHHHHTCCSSSCEEEE--TTEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHc-----CCCeEEEEccCcHHHHHHHHHhCCccCCEEEE--CCEEE
Confidence            5788999999999999888774     56777778777666667777889999999754  66544

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=97.51  E-value=0.00015  Score=50.37  Aligned_cols=60  Identities=13%  Similarity=0.169  Sum_probs=46.4

Q ss_pred             EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEE
Q 018973          257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRG  324 (348)
Q Consensus       257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~  324 (348)
                      |+.|..++|++|.++...|.+.      ++.|..+|++++...+.+.+..+...+|.+++  +|+.++
T Consensus         7 I~iYs~~~C~~C~~ak~lL~~~------~i~~~~~~v~~~~~~~~~~~~~~~~tvP~i~i--~g~~IG   66 (74)
T d1nm3a1           7 ISIFTKPGCPFCAKAKQLLHDK------GLSFEEIILGHDATIVSVRAVSGRTTVPQVFI--GGKHIG   66 (74)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH------TCCCEEEETTTTCCHHHHHHHTCCSSSCEEEE--TTEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHc------CCCeEEEEccCcHHHHHHHHHhCCccCCEEEE--CCEEEE
Confidence            5678999999999987766653      36778888887776667777888999998754  887653

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.51  E-value=4.6e-05  Score=63.64  Aligned_cols=76  Identities=13%  Similarity=0.052  Sum_probs=55.9

Q ss_pred             CCCEEEEEEe-CCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchhHHHHHHHc----CcCCCCeEEEeeccccccc
Q 018973          138 KNKLVVVEFA-ASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEKTKELCERE----KIKKVPHFSFYKSMEKIHE  210 (348)
Q Consensus       138 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~~~~l~~~~----~V~~~Pt~~~~~~g~~v~~  210 (348)
                      ++|.||+.|| ++||+.|....+.+.++.+++.  ++.++.|..|....+...++.+    ++..+|.-++......+.+
T Consensus        32 ~GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~g~~VlgIS~Ds~~s~~~~~~~~~~~~~~~~l~fpllsD~~~~v~~  111 (194)
T d1uula_          32 KGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMK  111 (194)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHH
T ss_pred             CCCeEEEEEEeCCccccchhhhhHHHhhhhhhccCceEEEEEecCchhhhhhhhhhhhhhccccCCCcceeeCCcchHHH
Confidence            6899999999 9999999999999999999885  5999999999765555555443    3456676555554444433


Q ss_pred             ccc
Q 018973          211 EEG  213 (348)
Q Consensus       211 ~~G  213 (348)
                      -.|
T Consensus       112 ~yg  114 (194)
T d1uula_         112 SYG  114 (194)
T ss_dssp             HHT
T ss_pred             HcC
Confidence            333

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.51  E-value=0.00031  Score=58.02  Aligned_cols=91  Identities=15%  Similarity=0.108  Sum_probs=66.6

Q ss_pred             CCcEEEEEEe-CCCChhhhhhhhHHHHHHHHhC-CcEEEEEEECCCchhHH----------------------HHHHhCC
Q 018973          252 DQKLIVLDVG-LKHCGPCVKVYPTVIKLSRQMA-GTVVFARMNGDENDSCM----------------------QFLRDMN  307 (348)
Q Consensus       252 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~~~~~~----------------------~l~~~~~  307 (348)
                      .++.+||+|| +.||+.|....+.|.+..+++. .++.++.|..|.....+                      +++++||
T Consensus        29 kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~~~~v~gIS~Ds~~sh~~f~~~~~~~~~~~fpllsD~~~~v~~~yG  108 (186)
T d1n8ja_          29 EGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD  108 (186)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHTT
T ss_pred             CCCeEEEEEEeccCCCccHHHHHHHHHhhhhcccccEEEEeccccCHHHHHHHhccccccccccccccccHHHHHHHHhC
Confidence            4689999999 8889999999999999998885 34888888887543322                      3555677


Q ss_pred             CC----cc--c-eEEEEeCCeEEEEEe-----CCChHHHHHHHHHHh
Q 018973          308 VV----EV--P-TFLFIRDGQIRGRYV-----GSGKGELIGEILRYQ  342 (348)
Q Consensus       308 V~----~~--P-Tl~~~~~G~~v~~~~-----G~~~~~L~~~l~~~~  342 (348)
                      +.    ++  | ||++.++|++.....     |.+.+++.+.|+.+.
T Consensus       109 v~~~~~g~~~r~tfiID~~G~Ir~~~v~~~~~~r~~~eiL~~lkaLQ  155 (186)
T d1n8ja_         109 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQ  155 (186)
T ss_dssp             CEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             CCcccCCcceeeEEEECchheEEEEeecCCCcccCHHHHHHHHHHHH
Confidence            63    33  4 577778999876543     236788888887653

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.51  E-value=3.8e-05  Score=61.93  Aligned_cols=76  Identities=13%  Similarity=0.107  Sum_probs=56.0

Q ss_pred             CCCEEEEEEe-CCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchhHHHHHHHcC----cCCCCeEEEeeccccccc
Q 018973          138 KNKLVVVEFA-ASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEKTKELCEREK----IKKVPHFSFYKSMEKIHE  210 (348)
Q Consensus       138 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~~~~l~~~~~----V~~~Pt~~~~~~g~~v~~  210 (348)
                      +||+||+.|| +.||+.|....+.+.++..++.  ++.++.|..|....++..++..+    ...+|.-++...+..+.+
T Consensus        25 ~Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~~~~vigIS~d~~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~~~~  104 (158)
T d1zyea1          25 KGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISR  104 (158)
T ss_dssp             TTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEeehhcCCccccchhhHHHhHHHhhcCCceEEeccCcCHHHHHHHHhhhHhhccccccccccccccccHHHH
Confidence            6889999999 8999999999999999999875  58999999998665556665542    235666555554444443


Q ss_pred             ccc
Q 018973          211 EEG  213 (348)
Q Consensus       211 ~~G  213 (348)
                      ..|
T Consensus       105 ~yg  107 (158)
T d1zyea1         105 DYG  107 (158)
T ss_dssp             HTT
T ss_pred             HHH
Confidence            333

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=97.50  E-value=4.2e-05  Score=54.93  Aligned_cols=64  Identities=17%  Similarity=0.225  Sum_probs=48.5

Q ss_pred             EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchh-HHHHHHHc--CcCCCCeEEEeeccccc
Q 018973          143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEK-TKELCERE--KIKKVPHFSFYKSMEKI  208 (348)
Q Consensus       143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~-~~~l~~~~--~V~~~Pt~~~~~~g~~v  208 (348)
                      +|.|..++|+.|++....|+++..++.++.+..+|+++.++ ..++.+..  +++.+|.+.+  +|+.+
T Consensus         3 vviysk~~Cp~C~~aK~ll~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~tvPqIfi--~g~~I   69 (85)
T d1egoa_           3 TVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFV--DQQHI   69 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHSSCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEEE--TTEEE
T ss_pred             EEEEeCCCCHhHHHHHHHHHHcCCCCCCceEEEEecCCCHHHHHHHHHHhcCCCCCCCEEEE--CCEEE
Confidence            67899999999999999999999999999999988765332 22344333  4578999755  66544

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.49  E-value=0.00015  Score=58.72  Aligned_cols=86  Identities=12%  Similarity=0.039  Sum_probs=55.3

Q ss_pred             CCcEEEEEEe-CCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhH-------------------HHHHHhCCCC--
Q 018973          252 DQKLIVLDVG-LKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSC-------------------MQFLRDMNVV--  309 (348)
Q Consensus       252 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~-------------------~~l~~~~~V~--  309 (348)
                      .++++|+.|| +.||+.|....+.|.+...+.+  +.++.|..+.....                   ..+.+.|++.  
T Consensus        42 ~Gk~vvl~f~~~~~~p~C~~e~~~l~~~~~~~g--~~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  119 (166)
T d1xvqa_          42 RGKSVLLNIFPSVDTPVCATSVRTFDERAAASG--ATVLCVSKDLPFAQKRFCGAEGTENVMPASAFRDSFGEDYGVTIA  119 (166)
T ss_dssp             TTSCEEEEECSCCCSSCCCHHHHHHHHHHHHTT--CEEEEEESSCHHHHTTCC------CEEEEECTTSSHHHHTTCBBC
T ss_pred             CCcEEEEEeeecccccccHHHHHHHhhhccccc--ccccccccchHHHHHHHHHHhCCcccccccchhHHHHHHhCeeec
Confidence            5788999999 5688889999898888777753  56666665532211                   1245566653  


Q ss_pred             -----c--cc-eEEEEeCCeEEEEEeCC------ChHHHHHHHH
Q 018973          310 -----E--VP-TFLFIRDGQIRGRYVGS------GKGELIGEIL  339 (348)
Q Consensus       310 -----~--~P-Tl~~~~~G~~v~~~~G~------~~~~L~~~l~  339 (348)
                           +  .| +|++.++|++++...+.      +.+++.+.|+
T Consensus       120 ~~~~~g~~~ra~fvID~~G~I~y~~~~~~~~~~~~~d~il~aL~  163 (166)
T d1xvqa_         120 DGPMAGLLARAIVVIGADGNVAYTELVPEIAQEPNYEAALAALG  163 (166)
T ss_dssp             SSTTTTSBCSEEEEECTTSBEEEEEECSBTTCCCCHHHHHHHHH
T ss_pred             cCcccCceeeEEEEEeCCCEEEEEEEcCCCCCCCCHHHHHHHHH
Confidence                 1  25 46667899998765432      3455555554

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=0.0002  Score=58.18  Aligned_cols=76  Identities=9%  Similarity=0.139  Sum_probs=55.0

Q ss_pred             CCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCC---c----------------------------------
Q 018973          139 NKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE---S----------------------------------  181 (348)
Q Consensus       139 ~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~---~----------------------------------  181 (348)
                      .+.+|+.|+-+.||+|+++.+.++++.+++ .+.+.-++..-   .                                  
T Consensus        36 a~~tv~vF~D~~CP~C~~~~~~l~~l~~~~-~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~~~~~~~~~~~~~~~~  114 (169)
T d1v58a1          36 APVIVYVFADPFCPYCKQFWQQARPWVDSG-KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLNVPA  114 (169)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHTT-SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCCCCS
T ss_pred             CCEEEEEEECCCCcchHHHHHHHHHHHhcc-ceeEEEEecccCCcchHHHHHHHHhhhCHHHHHHHHHHhhhcccccccc
Confidence            356799999999999999999999998764 35555555421   0                                  


Q ss_pred             ----------hhHHHHHHHcCcCCCCeEEEeeccccccccccCC
Q 018973          182 ----------EKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIG  215 (348)
Q Consensus       182 ----------~~~~~l~~~~~V~~~Pt~~~~~~g~~v~~~~G~~  215 (348)
                                ++..++++++||+++|||++...+.....+.|..
T Consensus       115 ~~~~~~~~~i~~n~~~a~~~gi~gTPt~i~~~~~g~~~~~~G~~  158 (169)
T d1v58a1         115 NVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTLQQAVGLP  158 (169)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEEEEEESSC
T ss_pred             hhhHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEEecCCC
Confidence                      1235788899999999988866544455566643

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=97.42  E-value=0.0004  Score=56.12  Aligned_cols=41  Identities=20%  Similarity=0.207  Sum_probs=34.3

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeC
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMG  178 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~  178 (348)
                      .+++.||+|+.--|++|+.+.+.+.++.+++++ +.+.....
T Consensus        17 ~~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~~~~~~~~~~   58 (181)
T d1beda_          17 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHV   58 (181)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEEEC
T ss_pred             CCCCEEEEEECCCCccchhhhhhhhhHhhhcccccceeEEec
Confidence            467899999999999999999999999999875 55555543

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.41  E-value=0.00012  Score=60.68  Aligned_cols=74  Identities=15%  Similarity=0.030  Sum_probs=55.8

Q ss_pred             CCCEEEEEEe-CCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchhHHHHHHHcC-cCCCCeEEEee-cccccccc
Q 018973          138 KNKLVVVEFA-ASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEKTKELCEREK-IKKVPHFSFYK-SMEKIHEE  211 (348)
Q Consensus       138 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~~~~l~~~~~-V~~~Pt~~~~~-~g~~v~~~  211 (348)
                      +++.||+.|| +.||+.|....+.|.+..+++.  ++.++.|..|..+.++..+++++ +..+|.-++.. +|+....+
T Consensus        29 kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~~~~v~gIS~Ds~~sh~~f~~~~~~~~~~~fpllsD~~~~v~~~y  107 (186)
T d1n8ja_          29 EGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNF  107 (186)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHT
T ss_pred             CCCeEEEEEEeccCCCccHHHHHHHHHhhhhcccccEEEEeccccCHHHHHHHhccccccccccccccccHHHHHHHHh
Confidence            6889999999 8889999999999999999885  58999999998776677887765 23445444444 34433333

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=97.37  E-value=0.00043  Score=48.95  Aligned_cols=60  Identities=20%  Similarity=0.266  Sum_probs=43.9

Q ss_pred             EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHH-HHHHhCCCCccceEEEEeCCeEEE
Q 018973          257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCM-QFLRDMNVVEVPTFLFIRDGQIRG  324 (348)
Q Consensus       257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~-~l~~~~~V~~~PTl~~~~~G~~v~  324 (348)
                      |..|..+||++|.+....|.+.      ++.|..+|+++.++.+ ++.+..|...+|.+.+  +|+.++
T Consensus         3 I~iys~~~Cp~C~~ak~~L~~~------~i~y~~~di~~~~~~~~~~~~~~g~~tvP~i~i--~~~~IG   63 (82)
T d1fova_           3 VEIYTKETCPYCHRAKALLSSK------GVSFQELPIDGNAAKREEMIKRSGRTTVPQIFI--DAQHIG   63 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH------TCCCEEEECTTCSHHHHHHHHHHSSCCSCEEEE--TTEEEE
T ss_pred             EEEEeCCCCHhHHHHHHHHHHc------CCCeEEEeccchHHHHHHHHHHhCCCCCCeEEE--CCEEEe
Confidence            4568899999999987666542      3778888988776543 4556668899998754  887553

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.37  E-value=0.00046  Score=53.08  Aligned_cols=101  Identities=8%  Similarity=0.059  Sum_probs=77.1

Q ss_pred             ChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCc-cceEEE
Q 018973          238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVE-VPTFLF  316 (348)
Q Consensus       238 s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~-~PTl~~  316 (348)
                      +.+++...+.    .+.|.++.|+.+.- .-......+.++|+++++++.|+.+|.+++..   .++.||+.. .|.+++
T Consensus         6 ~~~~~~~y~~----~~~Pl~~~f~~~~~-~~~~~~~~~~~vAk~fkgki~Fv~~D~~~~~~---~l~~fgl~e~~P~~~i   77 (125)
T d2b5ea3           6 DGSVFAQYVE----SGLPLGYLFYNDEE-ELEEYKPLFTELAKKNRGLMNFVSIDARKFGR---HAGNLNMKEQFPLFAI   77 (125)
T ss_dssp             CHHHHHHHHH----TTSCEEEEEESSHH-HHHHHHHHHHHHHHHTTTTCEEEEEEHHHHTT---HHHHTTCCSCSSEEEE
T ss_pred             CHHHHHHHHh----cCCCEEEEEeCChH-HHHHHHHHHHHHHHHhcCeeEEEEEchHHhHH---HHHHcCCCccCCcEEE
Confidence            5577777776    36888888988643 45678889999999999999999999988777   889999854 898877


Q ss_pred             Ee-CCeEEEEEe-------------CC-ChHHHHHHHHHHhCCCC
Q 018973          317 IR-DGQIRGRYV-------------GS-GKGELIGEILRYQGVRV  346 (348)
Q Consensus       317 ~~-~G~~v~~~~-------------G~-~~~~L~~~l~~~~~~~~  346 (348)
                      .. .+.....+.             +. +.+.|.+|+++++.-++
T Consensus        78 ~~~~~~~ky~~~~~~~~~~~~~~~~~e~t~~~i~~F~~d~l~GKl  122 (125)
T d2b5ea3          78 HDMTEDLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLKGDA  122 (125)
T ss_dssp             EETTTTEEEECCCCCHHHHHTCCSCCCCCHHHHHHHHHHHHHTCC
T ss_pred             EecccCcccccchhhhhhcccccccccCCHHHHHHHHHHHHcCCc
Confidence            74 233333332             44 89999999999876543

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=97.37  E-value=0.00012  Score=62.79  Aligned_cols=73  Identities=11%  Similarity=-0.035  Sum_probs=54.6

Q ss_pred             CCCEEEEEEe-CCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCch------------------------hHHHHHHH
Q 018973          138 KNKLVVVEFA-ASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESE------------------------KTKELCER  190 (348)
Q Consensus       138 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~------------------------~~~~l~~~  190 (348)
                      +++.||+.|| ++||+.|....+.|.++++++.  ++.++.|.+|...                        ...++++.
T Consensus        28 kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~g~~vigiS~Ds~~sh~~w~~~~~~~~~~~l~fpllsD~~~~vak~  107 (237)
T d2zcta1          28 QGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARR  107 (237)
T ss_dssp             TTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHHCCCCCSCEEECGGGHHHHH
T ss_pred             CCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccCCcceeeccCCcHHHHHHHhhhhhhhcccccccccccCcchHHHHH
Confidence            6889999999 9999999999999999988874  5899999888532                        23467778


Q ss_pred             cCc-------CCCCeEEEe-eccccccc
Q 018973          191 EKI-------KKVPHFSFY-KSMEKIHE  210 (348)
Q Consensus       191 ~~V-------~~~Pt~~~~-~~g~~v~~  210 (348)
                      ||+       ...|+..++ .+|.....
T Consensus       108 yGv~~~~~~~~~~RatFIIDpdG~Ir~~  135 (237)
T d2zcta1         108 LGLLHAESATHTVRGVFIVDARGVIRTM  135 (237)
T ss_dssp             TTCC----CCTTCCEEEEECTTSBEEEE
T ss_pred             cCCccccccccceeeeEEECCCCEEEEE
Confidence            887       356664444 56665443

>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein XCC2852
species: Xanthomonas campestris [TaxId: 339]

Probab=97.35  E-value=0.00044  Score=48.20  Aligned_cols=72  Identities=11%  Similarity=0.044  Sum_probs=52.3

Q ss_pred             EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCCChHHHHH
Q 018973          257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIG  336 (348)
Q Consensus       257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~~~~~L~~  336 (348)
                      +..|..++|..|......+.+   ..  .+.+..+|++++++   +.++|+.. +|.+.+ .+|++..  -+.++++|.+
T Consensus         2 ltLyt~~~C~LCe~A~~~l~~---~~--~~~~~~vdI~~d~~---l~~~y~~~-IPVl~~-~~~~~l~--w~fd~~~l~~   69 (75)
T d1ttza_           2 LTLYQRDDCHLCDQAVEALAQ---AR--AGAFFSVFIDDDAA---LESAYGLR-VPVLRD-PMGRELD--WPFDAPRLRA   69 (75)
T ss_dssp             EEEEECSSCHHHHHHHHHHHH---TT--CCCEEEEECTTCHH---HHHHHTTT-CSEEEC-TTCCEEE--SCCCHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHh---cc--CCcEEEEEccCCHH---HHHHhCCe-eeEEEE-CCeeEEc--CccCHHHHHH
Confidence            467899999999987554432   22  36788999999887   99999976 897653 4444432  3459999999


Q ss_pred             HHHH
Q 018973          337 EILR  340 (348)
Q Consensus       337 ~l~~  340 (348)
                      +|..
T Consensus        70 ~L~~   73 (75)
T d1ttza_          70 WLDA   73 (75)
T ss_dssp             HHHT
T ss_pred             HHhc
Confidence            9864

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.26  E-value=0.00042  Score=55.68  Aligned_cols=40  Identities=23%  Similarity=0.188  Sum_probs=32.3

Q ss_pred             CCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC---cEEEEEeC
Q 018973          139 NKLVVVEFAASRSLDSSKIYPFMVDLSRQCND---VEFILVMG  178 (348)
Q Consensus       139 ~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~---v~f~~vd~  178 (348)
                      .+..|+.|+-..|++|+++.+.+.++.+++++   +.++.+..
T Consensus        24 a~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~~~~~~~~   66 (172)
T d1z6ma1          24 APVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLF   66 (172)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEEC
T ss_pred             CCEEEEEEECCCCHhHHHHHHHHhhhhhhhccccceeeeeccc
Confidence            46789999999999999999999999888753   55554443

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=0.001  Score=55.21  Aligned_cols=91  Identities=16%  Similarity=0.152  Sum_probs=67.7

Q ss_pred             CCcEEEEEEe-CCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchh-------------------------HHHHHH
Q 018973          252 DQKLIVLDVG-LKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDS-------------------------CMQFLR  304 (348)
Q Consensus       252 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~-------------------------~~~l~~  304 (348)
                      .++++||+|| ..||+.|......+.+..+++.. .+.++.|..|....                         ..++++
T Consensus        33 ~Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~vigIS~D~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~va~  112 (197)
T d1qmva_          33 KGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSE  112 (197)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTCHHHH
T ss_pred             CCCeEEEEEecccccccchhhhHHHHHHHHHhccCCcEEEEEecCCHHHHHhhhcchhhhcCcCCCccceEeccchHHHH
Confidence            4789999999 99999999999999999988854 58888888764221                         224777


Q ss_pred             hCCCC----c--cc-eEEEEeCCeEEEEEe-----CCChHHHHHHHHHHh
Q 018973          305 DMNVV----E--VP-TFLFIRDGQIRGRYV-----GSGKGELIGEILRYQ  342 (348)
Q Consensus       305 ~~~V~----~--~P-Tl~~~~~G~~v~~~~-----G~~~~~L~~~l~~~~  342 (348)
                      .||+.    +  .| ||++.++|++.....     |.+.+++.+.|+.+.
T Consensus       113 ~ygv~~~~~g~~~R~tfiID~~g~Ir~~~~~~~~~~r~~~E~lr~l~alq  162 (197)
T d1qmva_         113 DYGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQ  162 (197)
T ss_dssp             HTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HhCCCcccCCeeeEEEEEECCCCcEEEEEecCCCcccCHHHHHHHHHhhc
Confidence            78874    2  34 677778999876543     236788888877653

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=97.22  E-value=0.00042  Score=56.26  Aligned_cols=89  Identities=16%  Similarity=0.142  Sum_probs=65.1

Q ss_pred             CcEEEEEEe-CCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchh-------------------------HHHHHHh
Q 018973          253 QKLIVLDVG-LKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDS-------------------------CMQFLRD  305 (348)
Q Consensus       253 ~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~-------------------------~~~l~~~  305 (348)
                      ++++||+|| +.||+.|......+.+..+++.+ .+.++.|+.|....                         ...++++
T Consensus        27 ~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~g~~vigIS~D~~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~~~~~  106 (170)
T d2h01a1          27 KKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARS  106 (170)
T ss_dssp             TCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHH
T ss_pred             CCeEEEEEECCCCCCccchhhHHHhhhhhhhhcCCeeEecccCCcHHHHHhHhhhhhhhccccccCCceeEcCccHHHHH
Confidence            578999999 89999999999999888888753 48889888774211                         1247777


Q ss_pred             CCCC-----ccc-eEEEEeCCeEEEEEeCC-----ChHHHHHHHHHH
Q 018973          306 MNVV-----EVP-TFLFIRDGQIRGRYVGS-----GKGELIGEILRY  341 (348)
Q Consensus       306 ~~V~-----~~P-Tl~~~~~G~~v~~~~G~-----~~~~L~~~l~~~  341 (348)
                      ||+.     ..+ |+++.++|.+...+.+.     +.+++.+.|+.+
T Consensus       107 ygv~~~~~~~~R~tfiId~~G~I~~~~~~~~~~~~~~~eil~~l~~l  153 (170)
T d2h01a1         107 YDVLFNESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDAL  153 (170)
T ss_dssp             TTCEETTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHHH
T ss_pred             hCCccccccceeeeEEEcCCCeEEEEEEecCCCCCCHHHHHHHHHHh
Confidence            8873     234 57777899988876543     356777777664

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=97.20  E-value=6.1e-05  Score=62.95  Aligned_cols=43  Identities=12%  Similarity=0.199  Sum_probs=34.4

Q ss_pred             CCcEEEEEEeCCCChhhhhhhhHHH---HHHHHhCCcEEEEEEECC
Q 018973          252 DQKLIVLDVGLKHCGPCVKVYPTVI---KLSRQMAGTVVFARMNGD  294 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C~~~~p~l~---~la~~~~~~v~~~~vd~~  294 (348)
                      .+++.|+.|+.-+|++|..+.|.+.   ++.+.+++++.|..+...
T Consensus       112 ~~~~~VvEffsy~Cp~C~~~e~~l~~~~~~~~~~~~~v~~~~~~~~  157 (195)
T d1un2a_         112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVN  157 (195)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEECS
T ss_pred             CCCceEEEEEecCCccccccchhhhHHHHHHhhcCCCcEEEEEecC
Confidence            4677899999999999999999774   666677777778777664

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.00012  Score=58.14  Aligned_cols=31  Identities=6%  Similarity=0.097  Sum_probs=26.9

Q ss_pred             cCCCEEEEEEeCCCCH-HHHhhhhHHHHHHHH
Q 018973          137 AKNKLVVVEFAASRSL-DSSKIYPFMVDLSRQ  167 (348)
Q Consensus       137 ~~~k~vvV~F~a~wC~-~C~~~~p~l~~la~~  167 (348)
                      .++|+|||.|+.+||+ .|....+.+.++.++
T Consensus        18 ~~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~   49 (160)
T d1wp0a1          18 YLGQWLLIYFGFTHCPDVCPEELEKMIQVVDE   49 (160)
T ss_dssp             GTTSEEEEEEECTTCSSHHHHHHHHHHHHHHH
T ss_pred             hCCCEEEEEEECCCCccccccchHHHHHHHHH
Confidence            3799999999999996 799888888888765

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.19  E-value=0.00062  Score=50.61  Aligned_cols=65  Identities=15%  Similarity=0.237  Sum_probs=43.6

Q ss_pred             EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch-hHHHH-HHhCCCCccceEEEEeCCeEEE
Q 018973          257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND-SCMQF-LRDMNVVEVPTFLFIRDGQIRG  324 (348)
Q Consensus       257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~-~~~~l-~~~~~V~~~PTl~~~~~G~~v~  324 (348)
                      ++.|..+||++|.+....|.++.-.+ ..+.+..+|.+... ..++. .+..+...+|.+.+  +|+.++
T Consensus        14 Vviysk~~Cp~C~~ak~ll~~~~~~~-~~~~~~e~d~~~d~~~~~~~l~~~~g~~tvPqIfi--~g~~IG   80 (105)
T d1ktea_          14 VVVFIKPTCPFCRKTQELLSQLPFKE-GLLEFVDITATSDTNEIQDYLQQLTGARTVPRVFI--GKECIG   80 (105)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHSCBCT-TSEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEEE--TTEEEE
T ss_pred             EEEEECCCCchHHHHHHHHHHhCCcc-ceeeeeecccccccHHHHHHHhhccCCCcCcEEEE--CCEEEe
Confidence            66789999999999877776654333 23667777776543 23333 33457788998754  887653

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.19  E-value=0.00076  Score=53.21  Aligned_cols=91  Identities=11%  Similarity=0.088  Sum_probs=51.1

Q ss_pred             CCcEEEEEEeCCCChhh-hhhhhHHHHHHHHh----CCcEEEEEEECCCchh-------------------------HHH
Q 018973          252 DQKLIVLDVGLKHCGPC-VKVYPTVIKLSRQM----AGTVVFARMNGDENDS-------------------------CMQ  301 (348)
Q Consensus       252 ~~k~vvV~F~a~wC~~C-~~~~p~l~~la~~~----~~~v~~~~vd~~~~~~-------------------------~~~  301 (348)
                      .+|+++|.||.+||+.| ......+..+...+    ...+.+..+..+...+                         ...
T Consensus        25 ~GK~vli~f~~t~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (169)
T d2b7ka1          25 LGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKN  104 (169)
T ss_dssp             TTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHTTSCTTCEEEECCHHHHHH
T ss_pred             CCCEEEEEEeccccCCcccchhhhhhhhhhhccccccccceeeeeccccccCchhhhhhhhccccccccccccchhhhhh
Confidence            58999999999999764 44444444443333    2234444444332211                         001


Q ss_pred             HHHh----------------CCCCccc-eEEEEeCCeEEEEEeCC-ChHH----HHHHHHHHh
Q 018973          302 FLRD----------------MNVVEVP-TFLFIRDGQIRGRYVGS-GKGE----LIGEILRYQ  342 (348)
Q Consensus       302 l~~~----------------~~V~~~P-Tl~~~~~G~~v~~~~G~-~~~~----L~~~l~~~~  342 (348)
                      +.+.                +.+...| ++++.++|+++.++.+. +.+.    |.+.|++++
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~i~h~~~~fLID~~G~vv~~~~~~~~~~~~~~~I~e~ik~ll  167 (169)
T d2b7ka1         105 ACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHVKSYV  167 (169)
T ss_dssp             HHHHTTC--------------CTTTCCCEEEECTTSCEEEEECTTCCTTHHHHHHHHHHHHCC
T ss_pred             hhhhhheeeeecccCCcccCceeeccceEEEECCCCeEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence            1111                2345568 56666899999998776 5554    455555443

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=97.11  E-value=0.001  Score=53.51  Aligned_cols=77  Identities=9%  Similarity=0.095  Sum_probs=54.0

Q ss_pred             CCcEEEEEEe-CCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchh--------------------HHHHHHhCCCC-
Q 018973          252 DQKLIVLDVG-LKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDS--------------------CMQFLRDMNVV-  309 (348)
Q Consensus       252 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~--------------------~~~l~~~~~V~-  309 (348)
                      .+++++|+|| +.||+.|....+.|.+...++++ +.++.|..+....                    ...+.+.|++. 
T Consensus        41 ~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~~-~~vi~iS~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  119 (164)
T d1q98a_          41 ASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLSN-TIVLCISADLPFAQARFCGAEGIENAKTVSTFRNHALHSQLGVDI  119 (164)
T ss_dssp             TTSEEEEEECSCSCSSCCCHHHHHHHHHHHHSTT-EEEEEEESSCHHHHTTCTTTTTCTTEEEEECTTCTHHHHHTTCEE
T ss_pred             CCcEEEEEecCccccCcccHHHHHHHHHHHHhcc-ceEEeecCCcHHHHHHHHHHhCCccccccccccchhHHHhhceec
Confidence            4688999999 56788899999999999999864 7888887763211                    12355666652 


Q ss_pred             ------cc--c-eEEEEeCCeEEEEEeCC
Q 018973          310 ------EV--P-TFLFIRDGQIRGRYVGS  329 (348)
Q Consensus       310 ------~~--P-Tl~~~~~G~~v~~~~G~  329 (348)
                            ++  | ||++.++|++++.....
T Consensus       120 ~~~~~~g~~~Ra~fvID~~G~I~y~~~~~  148 (164)
T d1q98a_         120 QTGPLAGLTSRAVIVLDEQNNVLHSQLVE  148 (164)
T ss_dssp             CSSTTTTSBCCEEEEECTTSBEEEEEECS
T ss_pred             ccCccccCcccEEEEECCCCEEEEEEECC
Confidence                  33  5 46666899998765443

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.10  E-value=0.00019  Score=58.37  Aligned_cols=58  Identities=17%  Similarity=0.218  Sum_probs=43.5

Q ss_pred             CCCEEEEEEeCCCCH-HHHhhhhHHHHHHHHc----CCcEEEEEeCCC---c-hhHHHHHHHcCcCC
Q 018973          138 KNKLVVVEFAASRSL-DSSKIYPFMVDLSRQC----NDVEFILVMGDE---S-EKTKELCEREKIKK  195 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~-~C~~~~p~l~~la~~~----~~v~f~~vd~d~---~-~~~~~l~~~~~V~~  195 (348)
                      ++|+|||.||.+||+ .|....+.|.++.+++    .++.++.|.+|-   . +..++.++++++..
T Consensus        30 ~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiDp~~Dtp~~l~~y~~~~~~~~   96 (172)
T d1xzoa1          30 KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLSF   96 (172)
T ss_dssp             TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCCCG
T ss_pred             CCCEEEEEEecccccccccccchhhhhhhhhhccccccccccccccccccchHHHHHHHHHHhcccc
Confidence            689999999999997 7999999998887764    348888888763   1 23355666677653

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.09  E-value=9.5e-05  Score=59.94  Aligned_cols=46  Identities=11%  Similarity=0.019  Sum_probs=36.5

Q ss_pred             cCCCEEEEEEeCC-CCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchh
Q 018973          137 AKNKLVVVEFAAS-RSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEK  183 (348)
Q Consensus       137 ~~~k~vvV~F~a~-wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~  183 (348)
                      .++|+||+.||+. ||+.|....+.|.+..+++ ++.++.|..|....
T Consensus        41 ~~Gk~vvl~f~~~~~~p~C~~e~~~l~~~~~~~-g~~vv~Is~d~~~~   87 (166)
T d1xvqa_          41 FRGKSVLLNIFPSVDTPVCATSVRTFDERAAAS-GATVLCVSKDLPFA   87 (166)
T ss_dssp             GTTSCEEEEECSCCCSSCCCHHHHHHHHHHHHT-TCEEEEEESSCHHH
T ss_pred             hCCcEEEEEeeecccccccHHHHHHHhhhcccc-cccccccccchHHH
Confidence            3688999999955 7777999989888877665 67889999887443

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=97.06  E-value=0.00055  Score=48.38  Aligned_cols=59  Identities=15%  Similarity=0.191  Sum_probs=44.4

Q ss_pred             EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhH-HHHHHHcCcCCCCeEEEeeccccc
Q 018973          143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKT-KELCEREKIKKVPHFSFYKSMEKI  208 (348)
Q Consensus       143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~-~~l~~~~~V~~~Pt~~~~~~g~~v  208 (348)
                      |..|..+||+.|++....|++.     ++.|..+|+++.++. .++.+..|.+.+|.+.+  +|+.+
T Consensus         3 I~iys~~~Cp~C~~ak~~L~~~-----~i~y~~~di~~~~~~~~~~~~~~g~~tvP~i~i--~~~~I   62 (82)
T d1fova_           3 VEIYTKETCPYCHRAKALLSSK-----GVSFQELPIDGNAAKREEMIKRSGRTTVPQIFI--DAQHI   62 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH-----TCCCEEEECTTCSHHHHHHHHHHSSCCSCEEEE--TTEEE
T ss_pred             EEEEeCCCCHhHHHHHHHHHHc-----CCCeEEEeccchHHHHHHHHHHhCCCCCCeEEE--CCEEE
Confidence            5678899999999999888763     567778888765443 35667779999998754  66544

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.0033  Score=53.00  Aligned_cols=89  Identities=13%  Similarity=0.185  Sum_probs=65.5

Q ss_pred             CcEEEEEEe-CCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchh----------------------------HHHH
Q 018973          253 QKLIVLDVG-LKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDS----------------------------CMQF  302 (348)
Q Consensus       253 ~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~----------------------------~~~l  302 (348)
                      ++++|++|| +.||+.|......+.+...++.. .+.++.|.+|....                            ..++
T Consensus        27 ~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~g~~v~giS~Ds~~sh~~~~~~~~~~~~~~~~~~l~fpllsD~~~~v  106 (220)
T d1prxa_          27 DSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNREL  106 (220)
T ss_dssp             TSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSCCCSCCSSCEEECTTCHH
T ss_pred             CCeEEEEEECCCCCCcchhhHHHHHHHHHHhhcccceeeccccccccchhhhhhhhhhccccccccCcccccccCcccHH
Confidence            578999999 78999999999999999888853 47788887763221                            1247


Q ss_pred             HHhCCCC------------ccc-eEEEEeCCeEEEEEe-----CCChHHHHHHHHHH
Q 018973          303 LRDMNVV------------EVP-TFLFIRDGQIRGRYV-----GSGKGELIGEILRY  341 (348)
Q Consensus       303 ~~~~~V~------------~~P-Tl~~~~~G~~v~~~~-----G~~~~~L~~~l~~~  341 (348)
                      ++.||+.            .++ ||++..+|.+.....     |.+.+++.+.|+.+
T Consensus       107 a~~ygv~~~~~~~~~~~~~~~RatFIID~~g~Ir~~~~~~~~~gR~~dEiLr~l~al  163 (220)
T d1prxa_         107 AILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISL  163 (220)
T ss_dssp             HHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHHH
T ss_pred             HHHhCCccccccccccceeeeEEEEEEcCccceeEEEEecCCcccchHHHHHHHHHH
Confidence            7778774            234 677778999887654     33678888887765

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=97.02  E-value=0.00014  Score=59.31  Aligned_cols=65  Identities=11%  Similarity=-0.044  Sum_probs=47.7

Q ss_pred             CCEEEEEEe-CCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchhHHHHHHHcC----cCCCCeEEEee
Q 018973          139 NKLVVVEFA-ASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEKTKELCEREK----IKKVPHFSFYK  203 (348)
Q Consensus       139 ~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~~~~l~~~~~----V~~~Pt~~~~~  203 (348)
                      +++||+.|| +.||+.|....+.+.+...++.  ++.++.|..|....+...++++.    +..+|.-++..
T Consensus        33 k~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~Vvgis~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D  104 (170)
T d1zofa1          33 KNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVAD  104 (170)
T ss_dssp             SSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEEC
T ss_pred             CCEEEEEEEccccCCcCHHHHHHHHHhHHhhccCCeeEecccccchhhHHHHHhhhhhcccccCcccccccc
Confidence            468999999 9999999999999999888874  58999999987554445554442    23455444443

>d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.99  E-value=0.0012  Score=48.69  Aligned_cols=95  Identities=4%  Similarity=0.076  Sum_probs=69.4

Q ss_pred             ecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceE
Q 018973          235 QLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTF  314 (348)
Q Consensus       235 ~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl  314 (348)
                      .+.+.++++.++..   .+..+||-|+..--.+   ....+.+++..+.+.+.|+...   ..+   +++++++. .|++
T Consensus         3 ~i~~~~e~~~F~~~---~d~v~VvGfF~~~~~~---~~~~F~~~A~~~rd~~~F~~t~---d~~---va~~~~v~-~~~v   69 (102)
T d1a8ya2           3 LIEGERELQAFENI---EDEIKLIGYFKNKDSE---HYKAFKEAAEEFHPYIPFFATF---DSK---VAKKLTLK-LNEI   69 (102)
T ss_dssp             EECSHHHHHHHTTC---CSSCEEEEECSSTTCH---HHHHHHHHHHHHTTTSCEEEEC---CHH---HHHHHCCC-TTCE
T ss_pred             eecCHHHHHHHhcc---CCCEEEEEEECCCCcH---HHHHHHHHHHHcCCCceEEEEC---CHH---HHHHcCCC-CCCE
Confidence            45678889988864   2567788887754344   3345888899987788898875   333   99999995 7999


Q ss_pred             EEEeC-CeEEEEEeCC--ChHHHHHHHHHHh
Q 018973          315 LFIRD-GQIRGRYVGS--GKGELIGEILRYQ  342 (348)
Q Consensus       315 ~~~~~-G~~v~~~~G~--~~~~L~~~l~~~~  342 (348)
                      ++|+. .+....+.|.  +.++|..||+++.
T Consensus        70 vlfr~fde~~~~~~~~~~t~~~i~~Fi~~n~  100 (102)
T d1a8ya2          70 DFYEAFMEEPVTIPDKPNSEEEIVNFVEEHR  100 (102)
T ss_dssp             EEECTTCSSEEECSSSSCCHHHHHHHHHHTC
T ss_pred             EEeeecCCCceecCCCCCCHHHHHHHHHHhc
Confidence            99963 2223455674  8999999999864

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.95  E-value=0.0004  Score=51.69  Aligned_cols=64  Identities=19%  Similarity=0.212  Sum_probs=47.8

Q ss_pred             EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchh-HHH-HHHHcCcCCCCeEEEeeccccc
Q 018973          143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEK-TKE-LCEREKIKKVPHFSFYKSMEKI  208 (348)
Q Consensus       143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~-~~~-l~~~~~V~~~Pt~~~~~~g~~v  208 (348)
                      ||.|..+||+.|++....|.++.-++..+.+..+|.+...+ ..+ +.+..|.+.+|.+.+  +|+-+
T Consensus        14 Vviysk~~Cp~C~~ak~ll~~~~~~~~~~~~~e~d~~~d~~~~~~~l~~~~g~~tvPqIfi--~g~~I   79 (105)
T d1ktea_          14 VVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRVFI--GKECI   79 (105)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHSCBCTTSEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEEE--TTEEE
T ss_pred             EEEEECCCCchHHHHHHHHHHhCCccceeeeeecccccccHHHHHHHhhccCCCcCcEEEE--CCEEE
Confidence            67899999999999999998877777778888888776432 222 344568889998754  66544

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.00051  Score=57.16  Aligned_cols=76  Identities=13%  Similarity=0.060  Sum_probs=56.2

Q ss_pred             CCCEEEEEEe-CCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchhHHHHHHH----cCcCCCCeEEEeeccccccc
Q 018973          138 KNKLVVVEFA-ASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEKTKELCER----EKIKKVPHFSFYKSMEKIHE  210 (348)
Q Consensus       138 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~~~~l~~~----~~V~~~Pt~~~~~~g~~v~~  210 (348)
                      +++.+|+.|| +.||+.|......|.++.+++.  ++.++.|..|....+.+.+++    .++..+|.-++......+.+
T Consensus        33 ~Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~vigIS~D~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~va~  112 (197)
T d1qmva_          33 KGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSE  112 (197)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTCHHHH
T ss_pred             CCCeEEEEEecccccccchhhhHHHHHHHHHhccCCcEEEEEecCCHHHHHhhhcchhhhcCcCCCccceEeccchHHHH
Confidence            6789999999 9999999999999999999886  599999999986555555443    34556665455554444444


Q ss_pred             ccc
Q 018973          211 EEG  213 (348)
Q Consensus       211 ~~G  213 (348)
                      ..|
T Consensus       113 ~yg  115 (197)
T d1qmva_         113 DYG  115 (197)
T ss_dssp             HTT
T ss_pred             HhC
Confidence            444

>d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.0023  Score=47.79  Aligned_cols=94  Identities=12%  Similarity=0.185  Sum_probs=69.5

Q ss_pred             eecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccce
Q 018973          234 VQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPT  313 (348)
Q Consensus       234 ~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PT  313 (348)
                      ..+.+.+++++++..    ++.+||-|+..--...   ...+.++++.+. .+.|+.+...   +   +++++++.. |+
T Consensus         3 ~~l~~~~~~e~f~~~----~~v~VVGfF~~~~~~~---~~~F~~~A~~~~-d~~F~~t~~~---~---v~~~~~v~~-~~   67 (110)
T d1bjxa_           3 TTLPDGAAAESLVES----SEVAVIGFFKDVESDS---AKQFLQAAEAID-DIPFGITSNS---D---VFSKYQLDK-DG   67 (110)
T ss_dssp             EECCSHHHHHHHHHH----SSEEEEEECTTTTSHH---HHHHHHHHHHCS-SSCEEEECCS---H---HHHHTTCSS-CE
T ss_pred             eEcCCHHHHHHHhcc----CCeEEEEEEcCCCchH---HHHHHHHHHhCc-CceEEEECCH---H---HHHHcCCCC-Ce
Confidence            456788999999975    5788888887643333   345888999885 4778776533   2   889999975 99


Q ss_pred             EEEEeCCeE-EEEEeCC-ChHHHHHHHHHHh
Q 018973          314 FLFIRDGQI-RGRYVGS-GKGELIGEILRYQ  342 (348)
Q Consensus       314 l~~~~~G~~-v~~~~G~-~~~~L~~~l~~~~  342 (348)
                      +++|+.... ...+.|. +.++|.+||..+.
T Consensus        68 Ivl~k~~de~~~~~~~~~~~~~l~~fi~~~~   98 (110)
T d1bjxa_          68 VVLFKKFDEGRNNFEGEVTKENLLDFIKHNQ   98 (110)
T ss_dssp             EEEEESSSSSBCCCCSCCCHHHHHHHHHHHS
T ss_pred             EEEeccCCccccccCCCCCHHHHHHHHHHcC
Confidence            999986432 3344566 9999999999874

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=96.79  E-value=0.0013  Score=53.37  Aligned_cols=42  Identities=10%  Similarity=0.000  Sum_probs=31.2

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHHHH---HHHcCC-cEEEEEeCC
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMVDL---SRQCND-VEFILVMGD  179 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~~l---a~~~~~-v~f~~vd~d  179 (348)
                      .++++||+|+.-.|++|+.+.+.+..+   .+.+++ +.|......
T Consensus        17 ~~~~~VvEffdy~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   62 (188)
T d1fvka_          17 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVN   62 (188)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTTCHHHHHHTTSCTTCCEEEEECS
T ss_pred             CCCCEEEEEECCCChhhHHHHHHHHHHHHHhhccCCceEEEEEecC
Confidence            367789999999999999999887544   344444 777777643

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=96.67  E-value=0.00057  Score=55.45  Aligned_cols=72  Identities=13%  Similarity=0.034  Sum_probs=52.8

Q ss_pred             CCEEEEEEe-CCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchhHHHHHHHcC----cCCCCeEEEeeccccccc
Q 018973          139 NKLVVVEFA-ASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEKTKELCEREK----IKKVPHFSFYKSMEKIHE  210 (348)
Q Consensus       139 ~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~~~~l~~~~~----V~~~Pt~~~~~~g~~v~~  210 (348)
                      +++|||.|| +.||+.|......|.+.++++.  ++.++.|..|....+...+++++    +..+|.-++...+..+.+
T Consensus        27 ~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~g~~vigIS~D~~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~~~~  105 (170)
T d2h01a1          27 KKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIAR  105 (170)
T ss_dssp             TCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCeEEEEEECCCCCCccchhhHHHhhhhhhhhcCCeeEecccCCcHHHHHhHhhhhhhhccccccCCceeEcCccHHHH
Confidence            489999999 8999999999999999888874  58999999998655555655543    344666555554444433

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.64  E-value=0.003  Score=43.87  Aligned_cols=57  Identities=11%  Similarity=0.190  Sum_probs=44.2

Q ss_pred             EEEeCCCCHHHHhhhhHHHHHHHHcC-CcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeeccccc
Q 018973          144 VEFAASRSLDSSKIYPFMVDLSRQCN-DVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKI  208 (348)
Q Consensus       144 V~F~a~wC~~C~~~~p~l~~la~~~~-~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~~v  208 (348)
                      |..+.+.|..|.++....++.+++.+ +..+.+|  ++   ..++. +|||.++|.+++  ||+.+
T Consensus         4 IkVlg~gC~~C~~~~~~v~~a~~e~gi~a~v~kv--~d---~~ei~-~ygVmstPalvI--dg~vv   61 (77)
T d1iloa_           4 IQIYGTGCANCQMLEKNAREAVKELGIDAEFEKI--KE---MDQIL-EAGLTALPGLAV--DGELK   61 (77)
T ss_dssp             EEEECSSSSTTHHHHHHHHHHHHHTTCCEEEEEE--CS---HHHHH-HHTCSSSSCEEE--TTEEE
T ss_pred             EEEeCCCCccHHHHHHHHHHHHHHcCCceEEEEe--CC---HHHHH-HcCCcCCCEEEE--CCEEE
Confidence            34458999999999999999988875 2566666  45   56676 699999999988  56554

>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein XCC2852
species: Xanthomonas campestris [TaxId: 339]

Probab=96.58  E-value=0.0026  Score=44.06  Aligned_cols=50  Identities=14%  Similarity=0.168  Sum_probs=39.2

Q ss_pred             EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEE
Q 018973          143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFS  200 (348)
Q Consensus       143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~  200 (348)
                      +..|..++|.-|......+.    +..++.+..+|++++   +++.++||.+ +|.+.
T Consensus         2 ltLyt~~~C~LCe~A~~~l~----~~~~~~~~~vdI~~d---~~l~~~y~~~-IPVl~   51 (75)
T d1ttza_           2 LTLYQRDDCHLCDQAVEALA----QARAGAFFSVFIDDD---AALESAYGLR-VPVLR   51 (75)
T ss_dssp             EEEEECSSCHHHHHHHHHHH----HTTCCCEEEEECTTC---HHHHHHHTTT-CSEEE
T ss_pred             EEEECCCCccHHHHHHHHHH----hccCCcEEEEEccCC---HHHHHHhCCe-eeEEE
Confidence            56789999999988765543    234688999999984   4599999987 89765

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=96.58  E-value=0.0016  Score=52.76  Aligned_cols=42  Identities=12%  Similarity=0.152  Sum_probs=30.5

Q ss_pred             CcEEEEEEeCCCChhhhhhhhHHHHH---HHHhCCcEEEEEEECC
Q 018973          253 QKLIVLDVGLKHCGPCVKVYPTVIKL---SRQMAGTVVFARMNGD  294 (348)
Q Consensus       253 ~k~vvV~F~a~wC~~C~~~~p~l~~l---a~~~~~~v~~~~vd~~  294 (348)
                      +++.||.|+.-.||+|+.+.+.+..+   .....+.+.+......
T Consensus        18 ~~~~VvEffdy~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   62 (188)
T d1fvka_          18 GAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVN   62 (188)
T ss_dssp             TCCSEEEEECTTCHHHHHHHHTTCHHHHHHTTSCTTCCEEEEECS
T ss_pred             CCCEEEEEECCCChhhHHHHHHHHHHHHHhhccCCceEEEEEecC
Confidence            56778999999999999998877444   3444455667766653

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=96.34  E-value=0.0049  Score=47.34  Aligned_cols=78  Identities=9%  Similarity=0.168  Sum_probs=63.0

Q ss_pred             CCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCc--CC
Q 018973          119 ERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKI--KK  195 (348)
Q Consensus       119 ~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V--~~  195 (348)
                      +.+.++ |.+++....+  .+++.++.|+... .....+...+.++|++|.+ +.|+.+|.++.+   ...+.||+  ..
T Consensus         6 PLv~e~-~~~n~~~~~~--~~~pl~~lf~~~~-~~~~~~~~~~~~vA~~~~~ki~Fv~vd~~~~~---~~l~~~gl~~~~   78 (133)
T d2djka1           6 PLIGEI-GPETYSDYMS--AGIPLAYIFAETA-EERKELSDKLKPIAEAQRGVINFGTIDAKAFG---AHAGNLNLKTDK   78 (133)
T ss_dssp             CCSEEC-CHHHHHHHHH--TTSCEEEEECSCS-SSHHHHHHHHHHHHHSSTTTSEEEEECTTTTG---GGTTTTTCCSSS
T ss_pred             Cceecc-ChhhHHHHhc--CCCCEEEEEeCCc-hHHHHHHHHHHHHHHHhcCceEEEEEeHHHhH---HHHHHhcCCccc
Confidence            456676 7999999987  6788888888765 3567889999999999987 999999988844   47788898  46


Q ss_pred             CCeEEEee
Q 018973          196 VPHFSFYK  203 (348)
Q Consensus       196 ~Pt~~~~~  203 (348)
                      +|.++++.
T Consensus        79 ~P~~~i~~   86 (133)
T d2djka1          79 FPAFAIQE   86 (133)
T ss_dssp             SSEEEEEC
T ss_pred             CCcEEEEE
Confidence            89988874

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.92  E-value=0.0086  Score=44.46  Aligned_cols=70  Identities=16%  Similarity=0.238  Sum_probs=44.6

Q ss_pred             hHHHHhhhcccCCcEEEEEEeC-----CCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHH-HHHhCCCCccceE
Q 018973          241 DVEKLIDDHKVDQKLIVLDVGL-----KHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQ-FLRDMNVVEVPTF  314 (348)
Q Consensus       241 ~~~~~l~~~~~~~k~vvV~F~a-----~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~-l~~~~~V~~~PTl  314 (348)
                      .++.++.+     .+|+| |-.     |.|++|.++...|.+    +  .+.|..+|+++.++.++ +.+.-+...+|.+
T Consensus         7 ~i~~~i~~-----~~Vvv-F~Kgt~~~p~Cp~c~~ak~lL~~----~--~i~~~~~~v~~~~~~~~~l~~~t~~~TvPqI   74 (109)
T d1wika_           7 GLKVLTNK-----ASVML-FMKGNKQEAKCGFSKQILEILNS----T--GVEYETFDILEDEEVRQGLKTFSNWPTYPQL   74 (109)
T ss_dssp             CHHHHHTT-----SSEEE-EESSTTTCCCSSTHHHHHHHHHH----T--CSCEEEEESSSCHHHHHHHHHHHSCCSSCEE
T ss_pred             HHHHHHhc-----CCEEE-EeCCCCCCCCChHHHHHHHHHHh----c--CCCceEEEecccHHHHHHHHHhcCCCCCCeE
Confidence            35556653     44444 543     789999998766653    3  36778888888776443 3344466677766


Q ss_pred             EEEeCCeEEE
Q 018973          315 LFIRDGQIRG  324 (348)
Q Consensus       315 ~~~~~G~~v~  324 (348)
                      .+  +|+.++
T Consensus        75 Fi--~g~~IG   82 (109)
T d1wika_          75 YV--RGDLVG   82 (109)
T ss_dssp             EC--SSSEEE
T ss_pred             EE--CCEEEc
Confidence            54  887664

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.90  E-value=0.0042  Score=48.64  Aligned_cols=43  Identities=9%  Similarity=0.021  Sum_probs=27.1

Q ss_pred             cCCCEEEEEEeCCCCH-HHHhhhhHHHHHHHHc----C-CcEEEEEeCC
Q 018973          137 AKNKLVVVEFAASRSL-DSSKIYPFMVDLSRQC----N-DVEFILVMGD  179 (348)
Q Consensus       137 ~~~k~vvV~F~a~wC~-~C~~~~p~l~~la~~~----~-~v~f~~vd~d  179 (348)
                      .++|+|||.||.+||+ .|......+..+.+.+    . .+.+..+..+
T Consensus        24 ~~GK~vli~f~~t~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (169)
T d2b7ka1          24 LLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCD   72 (169)
T ss_dssp             GTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESC
T ss_pred             HCCCEEEEEEeccccCCcccchhhhhhhhhhhccccccccceeeeeccc
Confidence            3789999999999997 4555555555444332    2 2455555443

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=95.86  E-value=0.025  Score=47.26  Aligned_cols=90  Identities=9%  Similarity=0.207  Sum_probs=65.5

Q ss_pred             CCcEEEEEEe-CCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchhH-------------------------HHHHH
Q 018973          252 DQKLIVLDVG-LKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDSC-------------------------MQFLR  304 (348)
Q Consensus       252 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~~-------------------------~~l~~  304 (348)
                      .++++|++|| +.||+.|......+.+...++.. ++.++.+..|.....                         .++++
T Consensus        29 ~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~~~~~vigiS~Ds~~sh~~w~~~~~~~~~~~~l~fpllsD~~~~va~  108 (219)
T d1xcca_          29 ENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELAN  108 (219)
T ss_dssp             TTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHHTCSCCCCCEEECTTSHHHH
T ss_pred             CCCeEEEEEEcCCCCcccchhHHHHHHhhhhhcccceEEEeecCccHhHHhHHhhhhHhhcccCCCCcccccccccHHHH
Confidence            4789999999 99999999999999888888853 488888887743221                         13667


Q ss_pred             hCCCC----------ccc---eEEEEeCCeEEEEEe-----CCChHHHHHHHHHH
Q 018973          305 DMNVV----------EVP---TFLFIRDGQIRGRYV-----GSGKGELIGEILRY  341 (348)
Q Consensus       305 ~~~V~----------~~P---Tl~~~~~G~~v~~~~-----G~~~~~L~~~l~~~  341 (348)
                      .||+.          .++   ||++..+|++.....     |.+.+++.+.|+.+
T Consensus       109 ~ygv~~~~~~~~~~~~~~~R~tFiIDp~g~Ir~~~~~~~~~gr~~~EiLr~l~aL  163 (219)
T d1xcca_         109 KLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKSL  163 (219)
T ss_dssp             HHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HhCCcccccccCcccceeeeeeEEEcCcceEEEEEEeCCCcccCHHHHHHHHHHH
Confidence            77772          133   566768999876532     33788888888765

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.79  E-value=0.014  Score=44.38  Aligned_cols=72  Identities=11%  Similarity=0.212  Sum_probs=59.7

Q ss_pred             CHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCC-CCeEEEee
Q 018973          126 SIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKK-VPHFSFYK  203 (348)
Q Consensus       126 s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~-~Pt~~~~~  203 (348)
                      +.+++...++  .+.|.++.|+.+-- .-..+...+.++|++|.+ +.|+.+|.++   .....+.+|+.. .|.+.+..
T Consensus         6 ~~~~~~~y~~--~~~Pl~~~f~~~~~-~~~~~~~~~~~vAk~fkgki~Fv~~D~~~---~~~~l~~fgl~e~~P~~~i~~   79 (125)
T d2b5ea3           6 DGSVFAQYVE--SGLPLGYLFYNDEE-ELEEYKPLFTELAKKNRGLMNFVSIDARK---FGRHAGNLNMKEQFPLFAIHD   79 (125)
T ss_dssp             CHHHHHHHHH--TTSCEEEEEESSHH-HHHHHHHHHHHHHHHTTTTCEEEEEEHHH---HTTHHHHTTCCSCSSEEEEEE
T ss_pred             CHHHHHHHHh--cCCCEEEEEeCChH-HHHHHHHHHHHHHHHhcCeeEEEEEchHH---hHHHHHHcCCCccCCcEEEEe
Confidence            7888999887  68999999998653 456788999999999988 9999999887   455789999864 89988765

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.75  E-value=0.014  Score=48.86  Aligned_cols=76  Identities=12%  Similarity=0.040  Sum_probs=54.7

Q ss_pred             CCCEEEEEEe-CCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchhHHHHHHH-------cCcCCCCeEEEeecccc
Q 018973          138 KNKLVVVEFA-ASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEKTKELCER-------EKIKKVPHFSFYKSMEK  207 (348)
Q Consensus       138 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~~~~l~~~-------~~V~~~Pt~~~~~~g~~  207 (348)
                      +++.||+.|| +.||+.|......+.+..+++.  ++.++.|.+|..+.+....+.       -++..+|.-++......
T Consensus        26 g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~g~~v~giS~Ds~~sh~~~~~~~~~~~~~~~~~~l~fpllsD~~~~  105 (220)
T d1prxa_          26 GDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRE  105 (220)
T ss_dssp             TTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSCCCSCCSSCEEECTTCH
T ss_pred             CCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhcccceeeccccccccchhhhhhhhhhccccccccCcccccccCcccH
Confidence            4688999999 7899999999999999999875  489999999975544444333       23455676556655555


Q ss_pred             cccccc
Q 018973          208 IHEEEG  213 (348)
Q Consensus       208 v~~~~G  213 (348)
                      +.+..|
T Consensus       106 va~~yg  111 (220)
T d1prxa_         106 LAILLG  111 (220)
T ss_dssp             HHHHTT
T ss_pred             HHHHhC
Confidence            555444

>d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.67  E-value=0.04  Score=40.55  Aligned_cols=74  Identities=8%  Similarity=0.199  Sum_probs=57.8

Q ss_pred             ceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEE
Q 018973          121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFS  200 (348)
Q Consensus       121 v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~  200 (348)
                      ...+.+.+++++.+.  ++..+||=|+.+--.   .....+.++|+.+.++.|..+...+      +++++|++. |+++
T Consensus         2 a~~l~~~~~~e~f~~--~~~v~VVGfF~~~~~---~~~~~F~~~A~~~~d~~F~~t~~~~------v~~~~~v~~-~~Iv   69 (110)
T d1bjxa_           2 ATTLPDGAAAESLVE--SSEVAVIGFFKDVES---DSAKQFLQAAEAIDDIPFGITSNSD------VFSKYQLDK-DGVV   69 (110)
T ss_dssp             EEECCSHHHHHHHHH--HSSEEEEEECTTTTS---HHHHHHHHHHHHCSSSCEEEECCSH------HHHHTTCSS-CEEE
T ss_pred             ceEcCCHHHHHHHhc--cCCeEEEEEEcCCCc---hHHHHHHHHHHhCcCceEEEECCHH------HHHHcCCCC-CeEE
Confidence            356789999999998  578899999876433   3455788899999888888775333      888999976 9999


Q ss_pred             Eeeccc
Q 018973          201 FYKSME  206 (348)
Q Consensus       201 ~~~~g~  206 (348)
                      +|++..
T Consensus        70 l~k~~d   75 (110)
T d1bjxa_          70 LFKKFD   75 (110)
T ss_dssp             EEESSS
T ss_pred             EeccCC
Confidence            998643

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=95.32  E-value=0.011  Score=49.58  Aligned_cols=76  Identities=8%  Similarity=-0.003  Sum_probs=56.2

Q ss_pred             CCCEEEEEEe-CCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchhHHHHHHHc----CcCCCCeEEEeeccccccc
Q 018973          138 KNKLVVVEFA-ASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEKTKELCERE----KIKKVPHFSFYKSMEKIHE  210 (348)
Q Consensus       138 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~~~~l~~~~----~V~~~Pt~~~~~~g~~v~~  210 (348)
                      +++.||+.|| +.||+.|......+.+...++.  |+.++.|.+|....+...++.+    ++..+|.-++......+.+
T Consensus        29 ~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~~~~~vigiS~Ds~~sh~~w~~~~~~~~~~~~l~fpllsD~~~~va~  108 (219)
T d1xcca_          29 ENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELAN  108 (219)
T ss_dssp             TTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHHTCSCCCCCEEECTTSHHHH
T ss_pred             CCCeEEEEEEcCCCCcccchhHHHHHHhhhhhcccceEEEeecCccHhHHhHHhhhhHhhcccCCCCcccccccccHHHH
Confidence            6899999999 8999999999999999988875  5999999999866555555544    5666776444444444433


Q ss_pred             ccc
Q 018973          211 EEG  213 (348)
Q Consensus       211 ~~G  213 (348)
                      ..|
T Consensus       109 ~yg  111 (219)
T d1xcca_         109 KLK  111 (219)
T ss_dssp             HHT
T ss_pred             HhC
Confidence            333

>d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: SH3BGR (SH3-binding, glutamic acid-rich protein-like)
domain: SH3BGRL3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.80  E-value=0.11  Score=36.86  Aligned_cols=60  Identities=8%  Similarity=0.111  Sum_probs=39.4

Q ss_pred             EEEEeCCCCh------hhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCC---CCccceEEEEeCCeEEE
Q 018973          257 VLDVGLKHCG------PCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMN---VVEVPTFLFIRDGQIRG  324 (348)
Q Consensus       257 vV~F~a~wC~------~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~---V~~~PTl~~~~~G~~v~  324 (348)
                      ++.|++++|+      .|.++...|..    .  ++.|..+|++.+.+..+..++..   ...+|.+.  .+|+.++
T Consensus         4 i~vy~ts~~~~~~~~~~~~r~~~lL~~----~--~I~y~~iDi~~d~~~~~~~~~~~g~~~~t~Pqif--v~~~~iG   72 (93)
T d1t1va_           4 LRVYSTSVTGSREIKSQQSEVTRILDG----K--RIQYQLVDISQDNALRDEMRTLAGNPKATPPQIV--NGNHYCG   72 (93)
T ss_dssp             EEEEECSSCSCHHHHHHHHHHHHHHHH----T--TCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEE--ETTEEEE
T ss_pred             EEEEEccCcCChhhHHHHHHHHHHHHH----C--CCceEEEEecCchhHHHHHHHhccCCCceeEEEE--ECCEEEe
Confidence            4567899996      78887555554    2  48889999988776555555442   23455544  4887765

>d2axoa1 c.47.1.19 (A:38-262) Hypothetical protein Atu2684 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Atu2684-like
domain: Hypothetical protein Atu2684
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=93.23  E-value=0.24  Score=41.15  Aligned_cols=86  Identities=17%  Similarity=0.182  Sum_probs=61.8

Q ss_pred             CcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECC---------Cc--hh----HHHHHHhCCCCccceEEEE
Q 018973          253 QKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGD---------EN--DS----CMQFLRDMNVVEVPTFLFI  317 (348)
Q Consensus       253 ~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~---------~~--~~----~~~l~~~~~V~~~PTl~~~  317 (348)
                      .+.||=.|.+.||..|-.....|.+|++.  +++..+.+.++         ..  +.    -+..++.++...+||=.++
T Consensus         5 ~~aVVElFTSqgCssCPpAd~~L~~L~~~--~~Vi~La~HVdYWd~lGw~D~fa~~~~t~RQ~~Y~~~~g~~~vyTPq~v   82 (225)
T d2axoa1           5 VKGVVELFTSQGCASCPPADEALRKMIQK--GDVVGLSYHVDYWNYLGWTDSLASKENTERQYGYMRALGRNGVYTPQAI   82 (225)
T ss_dssp             CCCEEEEEECTTCTTCHHHHHHHHHHHHH--TSSEEEEEECSTTCSSSSCCTTCCHHHHHHHHHHHHHTTCSCCCSSEEE
T ss_pred             CCcEEEEeeCCCCCCCHHHHHHHHHhhCC--CCEEEEEeccccccccCCCCCCCCchhhHHHHHHHHhcCCCCCCceeEE
Confidence            45677788899999999999999999876  56776766654         11  11    2346777899988775555


Q ss_pred             eCCeEEEEEeCCChHHHHHHHHHHh
Q 018973          318 RDGQIRGRYVGSGKGELIGEILRYQ  342 (348)
Q Consensus       318 ~~G~~v~~~~G~~~~~L~~~l~~~~  342 (348)
                      .+|+.  ...|.+...+...|.+..
T Consensus        83 vnG~~--~~~gs~~~~~~~~i~~~~  105 (225)
T d2axoa1          83 LNGRD--HVKGADVRGIYDRLDAFK  105 (225)
T ss_dssp             ETTTE--EEETTCHHHHHHHHHHHH
T ss_pred             EeCcc--cccccCHHHHHHHHHHHh
Confidence            58864  446778888888777653

>d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=93.21  E-value=0.096  Score=37.99  Aligned_cols=73  Identities=10%  Similarity=0.321  Sum_probs=54.4

Q ss_pred             ceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHc-CCcEEEEEeCCCchhHHHHHHHcCcCCCCeE
Q 018973          121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQC-NDVEFILVMGDESEKTKELCEREKIKKVPHF  199 (348)
Q Consensus       121 v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~-~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~  199 (348)
                      |..|.+.+++++.+.. ++..+||=|+.+--++   ....+.++|+.+ .++.|+...      .+++++++||+ .|++
T Consensus         1 v~~i~~~~e~~~F~~~-~d~v~VvGfF~~~~~~---~~~~F~~~A~~~rd~~~F~~t~------d~~va~~~~v~-~~~v   69 (102)
T d1a8ya2           1 VELIEGERELQAFENI-EDEIKLIGYFKNKDSE---HYKAFKEAAEEFHPYIPFFATF------DSKVAKKLTLK-LNEI   69 (102)
T ss_dssp             EEEECSHHHHHHHTTC-CSSCEEEEECSSTTCH---HHHHHHHHHHHHTTTSCEEEEC------CHHHHHHHCCC-TTCE
T ss_pred             CeeecCHHHHHHHhcc-CCCEEEEEEECCCCcH---HHHHHHHHHHHcCCCceEEEEC------CHHHHHHcCCC-CCCE
Confidence            4567888999998852 3567888888754333   455677888877 559998885      23499999996 7999


Q ss_pred             EEeec
Q 018973          200 SFYKS  204 (348)
Q Consensus       200 ~~~~~  204 (348)
                      ++|++
T Consensus        70 vlfr~   74 (102)
T d1a8ya2          70 DFYEA   74 (102)
T ss_dssp             EEECT
T ss_pred             EEeee
Confidence            99986

>d2axoa1 c.47.1.19 (A:38-262) Hypothetical protein Atu2684 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Atu2684-like
domain: Hypothetical protein Atu2684
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=93.01  E-value=0.13  Score=42.77  Aligned_cols=67  Identities=15%  Similarity=-0.019  Sum_probs=50.9

Q ss_pred             CCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCC--------Cc-------hhHHHHHHHcCcCCCCeEEEee
Q 018973          139 NKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGD--------ES-------EKTKELCEREKIKKVPHFSFYK  203 (348)
Q Consensus       139 ~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d--------~~-------~~~~~l~~~~~V~~~Pt~~~~~  203 (348)
                      -+.||=+|++.||..|-.....|.+|++. +++..+..-+|        +.       ...+.++..++.+.+||=.++.
T Consensus         5 ~~aVVElFTSqgCssCPpAd~~L~~L~~~-~~Vi~La~HVdYWd~lGw~D~fa~~~~t~RQ~~Y~~~~g~~~vyTPq~vv   83 (225)
T d2axoa1           5 VKGVVELFTSQGCASCPPADEALRKMIQK-GDVVGLSYHVDYWNYLGWTDSLASKENTERQYGYMRALGRNGVYTPQAIL   83 (225)
T ss_dssp             CCCEEEEEECTTCTTCHHHHHHHHHHHHH-TSSEEEEEECSTTCSSSSCCTTCCHHHHHHHHHHHHHTTCSCCCSSEEEE
T ss_pred             CCcEEEEeeCCCCCCCHHHHHHHHHhhCC-CCEEEEEeccccccccCCCCCCCCchhhHHHHHHHHhcCCCCCCceeEEE
Confidence            45677789999999999999999999765 67877777776        21       1235678888999988855556


Q ss_pred             ccc
Q 018973          204 SME  206 (348)
Q Consensus       204 ~g~  206 (348)
                      +|+
T Consensus        84 nG~   86 (225)
T d2axoa1          84 NGR   86 (225)
T ss_dssp             TTT
T ss_pred             eCc
Confidence            775

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.80  E-value=0.14  Score=37.45  Aligned_cols=69  Identities=14%  Similarity=0.120  Sum_probs=45.8

Q ss_pred             HHHHHHHhcCCCEEEEEEeC-----CCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhH-HHHHHHcCcCCCCeEEEe
Q 018973          129 EFDEALRLAKNKLVVVEFAA-----SRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKT-KELCEREKIKKVPHFSFY  202 (348)
Q Consensus       129 ~f~~~l~~~~~k~vvV~F~a-----~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~-~~l~~~~~V~~~Pt~~~~  202 (348)
                      .++++++   +.+||| |.-     |.|+.|+++...|.+     .++.|..+|+++.++. ..+.+..+.+.+|.+.+ 
T Consensus         7 ~i~~~i~---~~~Vvv-F~Kgt~~~p~Cp~c~~ak~lL~~-----~~i~~~~~~v~~~~~~~~~l~~~t~~~TvPqIFi-   76 (109)
T d1wika_           7 GLKVLTN---KASVML-FMKGNKQEAKCGFSKQILEILNS-----TGVEYETFDILEDEEVRQGLKTFSNWPTYPQLYV-   76 (109)
T ss_dssp             CHHHHHT---TSSEEE-EESSTTTCCCSSTHHHHHHHHHH-----TCSCEEEEESSSCHHHHHHHHHHHSCCSSCEEEC-
T ss_pred             HHHHHHh---cCCEEE-EeCCCCCCCCChHHHHHHHHHHh-----cCCCceEEEecccHHHHHHHHHhcCCCCCCeEEE-
Confidence            3455564   445555 543     789999999988765     3467788888876533 34555667788888654 


Q ss_pred             eccccc
Q 018973          203 KSMEKI  208 (348)
Q Consensus       203 ~~g~~v  208 (348)
                       +|+-+
T Consensus        77 -~g~~I   81 (109)
T d1wika_          77 -RGDLV   81 (109)
T ss_dssp             -SSSEE
T ss_pred             -CCEEE
Confidence             66544

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=91.89  E-value=0.03  Score=45.81  Aligned_cols=42  Identities=10%  Similarity=0.078  Sum_probs=33.5

Q ss_pred             CCCEEEEEEeCCCCHHHHhhhhHHH---HHHHHcCC-cEEEEEeCC
Q 018973          138 KNKLVVVEFAASRSLDSSKIYPFMV---DLSRQCND-VEFILVMGD  179 (348)
Q Consensus       138 ~~k~vvV~F~a~wC~~C~~~~p~l~---~la~~~~~-v~f~~vd~d  179 (348)
                      .+++.|++|+.=+|++|+.+.|.+.   ++.+.+++ +.|..+.+.
T Consensus       112 ~~~~~VvEffsy~Cp~C~~~e~~l~~~~~~~~~~~~~v~~~~~~~~  157 (195)
T d1un2a_         112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVN  157 (195)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEECS
T ss_pred             CCCceEEEEEecCCccccccchhhhHHHHHHhhcCCCcEEEEEecC
Confidence            3678899999999999999999875   66667775 777776643

>d1hyua3 c.47.1.2 (A:1-102) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.37  E-value=0.45  Score=34.20  Aligned_cols=87  Identities=20%  Similarity=0.274  Sum_probs=59.3

Q ss_pred             hhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEe
Q 018973          239 KEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIR  318 (348)
Q Consensus       239 ~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~  318 (348)
                      .++++..+..-   .++|.+.++...|..|.++...+++++.-- +++.+..-+.+             ....|++.+.+
T Consensus         7 k~QLk~~f~~l---~~~V~l~~~~~~~~~s~el~~~l~eva~lS-dkI~~~~~~~~-------------~~r~Ps~~i~~   69 (102)
T d1hyua3           7 KTQLRAYLEKL---TKPVELIATLDDSAKSAEIKELLAEIAELS-DKVTFKEDNTL-------------PVRKPSFLITN   69 (102)
T ss_dssp             HHHHHHHHTTC---CSCEEEEEECCSSHHHHHHHHHHHHHHTTC-TTEEEEECTTS-------------SSCSSEEEEEC
T ss_pred             HHHHHHHHHhC---CCCEEEEEEeCCChhHHHHHHHHHHHHhhC-CCeEEEEcCCC-------------CCCCCeEEEec
Confidence            34566666543   567777788889999999988888888654 66776532211             13469999988


Q ss_pred             CCeEE-EEEeCC-ChHHHHHHHHHHh
Q 018973          319 DGQIR-GRYVGS-GKGELIGEILRYQ  342 (348)
Q Consensus       319 ~G~~v-~~~~G~-~~~~L~~~l~~~~  342 (348)
                      +|+.. -+|.|. .-.++..+|...+
T Consensus        70 ~g~~~gI~F~GiP~GhEF~Slilail   95 (102)
T d1hyua3          70 PGSQQGPRFAGSPLGHEFTSLVLALL   95 (102)
T ss_dssp             TTCCCSCEEESCCCGGGHHHHHHHHH
T ss_pred             CCCEeeeEEecCCCcccHHHHHHHHH
Confidence            87643 467787 6666766666553

>d1g7oa2 c.47.1.5 (A:1-75) Glutaredoxin 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Glutaredoxin 2
species: Escherichia coli [TaxId: 562]

Probab=91.28  E-value=0.41  Score=32.17  Aligned_cols=72  Identities=15%  Similarity=0.153  Sum_probs=46.8

Q ss_pred             EEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCCChHHHHHHH
Q 018973          259 DVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEI  338 (348)
Q Consensus       259 ~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~~~~~L~~~l  338 (348)
                      .|+.+.|+.|++..-.+....-    .+.+..++.+..+   ++.+..+...+|+++. .+|+.+.     +-..+.++|
T Consensus         3 LY~~~~cP~~~rvr~~l~~kgi----~~e~~~~~~~~~~---~~~~~~p~~~VP~L~~-~dg~~i~-----eS~~I~~yL   69 (75)
T d1g7oa2           3 LYIYDHCPYCLKARMIFGLKNI----PVELHVLLNDDAE---TPTRMVGQKQVPILQK-DDSRYMP-----ESMDIVHYV   69 (75)
T ss_dssp             EEECTTCHHHHHHHHHHHHHTC----CCEEEECCTTTTH---HHHHHHSSSCCCEEEE-TTTEEEE-----CHHHHHHHH
T ss_pred             EEccCCCCchHHHHHHHHHhCC----CcccccccccchH---HHHHhCCCCceEEEEE-cCCCEEe-----cHHHHHHHH
Confidence            3667889999998655554321    1333344444433   3777778889998764 4676544     557788888


Q ss_pred             HHHhC
Q 018973          339 LRYQG  343 (348)
Q Consensus       339 ~~~~~  343 (348)
                      ++..|
T Consensus        70 d~~~G   74 (75)
T d1g7oa2          70 DKLDG   74 (75)
T ss_dssp             HHHTT
T ss_pred             HHhhC
Confidence            88766

>d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: SH3BGR (SH3-binding, glutamic acid-rich protein-like)
domain: SH3BGRL3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.81  E-value=0.37  Score=33.82  Aligned_cols=60  Identities=8%  Similarity=0.070  Sum_probs=40.0

Q ss_pred             EEEEeCCCCH------HHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHc---CcCCCCeEEEeecccccc
Q 018973          143 VVEFAASRSL------DSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCERE---KIKKVPHFSFYKSMEKIH  209 (348)
Q Consensus       143 vV~F~a~wC~------~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~---~V~~~Pt~~~~~~g~~v~  209 (348)
                      ++.|++++|+      .|.++...|+.     .++.|-.+|++.+++..+...+.   +...+|.+.+  +|+-+.
T Consensus         4 i~vy~ts~~~~~~~~~~~~r~~~lL~~-----~~I~y~~iDi~~d~~~~~~~~~~~g~~~~t~Pqifv--~~~~iG   72 (93)
T d1t1va_           4 LRVYSTSVTGSREIKSQQSEVTRILDG-----KRIQYQLVDISQDNALRDEMRTLAGNPKATPPQIVN--GNHYCG   72 (93)
T ss_dssp             EEEEECSSCSCHHHHHHHHHHHHHHHH-----TTCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEEE--TTEEEE
T ss_pred             EEEEEccCcCChhhHHHHHHHHHHHHH-----CCCceEEEEecCchhHHHHHHHhccCCCceeEEEEE--CCEEEe
Confidence            5667999996      79888877777     56788899988766554444443   2345666543  665443

>d1abaa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Bacteriophage T4 [TaxId: 10665]

Probab=88.98  E-value=0.55  Score=32.47  Aligned_cols=55  Identities=20%  Similarity=0.346  Sum_probs=31.3

Q ss_pred             CCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch------hHHHHHHhC-----CCCccceEEEEeCCeEEE
Q 018973          263 KHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND------SCMQFLRDM-----NVVEVPTFLFIRDGQIRG  324 (348)
Q Consensus       263 ~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~------~~~~l~~~~-----~V~~~PTl~~~~~G~~v~  324 (348)
                      +.|++|.+....|.+    .  ++.|..+++++..      ..+++.++.     +...+|.+.+ .||+.++
T Consensus        12 ~~C~~C~~AK~lL~~----~--~i~y~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~TvPqIfi-~dg~~IG   77 (87)
T d1abaa_          12 HKCGPCDNAKRLLTV----K--KQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFA-PDGSHIG   77 (87)
T ss_dssp             SCCHHHHHHHHHHHH----T--TCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEEC-TTSCEEE
T ss_pred             CCChhHHHHHHHHHH----c--CCCceeccccccccccCHHHHHHHHHHhcccCCCCceeCeEEe-cCCcEEE
Confidence            359999998555544    3  3666666765432      122344432     4567777643 4676543

>d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.61  E-value=0.72  Score=35.68  Aligned_cols=57  Identities=14%  Similarity=0.006  Sum_probs=38.5

Q ss_pred             CCCEEEEEEe-CCCCHHH-HhhhhHHHHHHHHc--CC-cEEEEEeCCCchhHHHHHHHcCcC
Q 018973          138 KNKLVVVEFA-ASRSLDS-SKIYPFMVDLSRQC--ND-VEFILVMGDESEKTKELCEREKIK  194 (348)
Q Consensus       138 ~~k~vvV~F~-a~wC~~C-~~~~p~l~~la~~~--~~-v~f~~vd~d~~~~~~~l~~~~~V~  194 (348)
                      ++|.||+.|| +.|++.| ....+.+.+...++  .+ ..++.+.++........+...+..
T Consensus        30 ~gk~vvL~fyP~afTp~Ct~~~~~~~~~~~~~~~~~g~~~i~~~s~~~~~~~~~~~~~~~~~   91 (161)
T d1hd2a_          30 KGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAE   91 (161)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHTTCT
T ss_pred             CCCeEEEEEEeccccccchhhhhhHHHhhhHHHHHcCCeEEEEEecCchhhhhhhhhhcccc
Confidence            6888999998 7899999 55777777765543  23 456666666644445566665554

>d1hyua3 c.47.1.2 (A:1-102) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=84.55  E-value=2.1  Score=30.52  Aligned_cols=67  Identities=15%  Similarity=0.125  Sum_probs=47.3

Q ss_pred             HHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeeccc
Q 018973          127 IEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSME  206 (348)
Q Consensus       127 ~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~  206 (348)
                      .++++..+.+. .++|.+..+...|..|..+...+++++.-.+.+.+..-+.+.             ...|+|.+.++|+
T Consensus         7 k~QLk~~f~~l-~~~V~l~~~~~~~~~s~el~~~l~eva~lSdkI~~~~~~~~~-------------~r~Ps~~i~~~g~   72 (102)
T d1hyua3           7 KTQLRAYLEKL-TKPVELIATLDDSAKSAEIKELLAEIAELSDKVTFKEDNTLP-------------VRKPSFLITNPGS   72 (102)
T ss_dssp             HHHHHHHHTTC-CSCEEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEECTTSS-------------SCSSEEEEECTTC
T ss_pred             HHHHHHHHHhC-CCCEEEEEEeCCChhHHHHHHHHHHHHhhCCCeEEEEcCCCC-------------CCCCeEEEecCCC
Confidence            34566666543 567777778889999999999999999877666665322221             3469999887765


Q ss_pred             c
Q 018973          207 K  207 (348)
Q Consensus       207 ~  207 (348)
                      .
T Consensus        73 ~   73 (102)
T d1hyua3          73 Q   73 (102)
T ss_dssp             C
T ss_pred             E
Confidence            4

>d1t4za_ c.47.1.15 (A:) Adaptive-response sensory-kinase SasA, N-terminal domain {Synechococcus elongatus [TaxId: 32046]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: KaiB-like
domain: Adaptive-response sensory-kinase SasA, N-terminal domain
species: Synechococcus elongatus [TaxId: 32046]

Probab=83.76  E-value=3.2  Score=29.59  Aligned_cols=70  Identities=13%  Similarity=0.127  Sum_probs=47.1

Q ss_pred             CCEEEEEEeCCCCHHHHhhhhHHHHHHHHc-CC--cEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeecccccccccc
Q 018973          139 NKLVVVEFAASRSLDSSKIYPFMVDLSRQC-ND--VEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEG  213 (348)
Q Consensus       139 ~k~vvV~F~a~wC~~C~~~~p~l~~la~~~-~~--v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~~v~~~~G  213 (348)
                      ..+++..|-+.. +.....-..+.++.+++ .+  +.+-.||+.+   .+++++.++|-++||++-.. -.+..++.|
T Consensus        11 ~~l~L~LfV~g~-p~S~~ai~~l~~~le~~~~g~~y~LeVIDv~~---qPelaE~~~IvATPtLIK~~-P~P~q~l~G   83 (105)
T d1t4za_          11 QPLLLQLFVDTR-PLSQHIVQRVKNILAAVEATVPISLQVINVAD---QPQLVEYYRLVVTPALVKIG-PGSRQVLSG   83 (105)
T ss_dssp             CCEEEEEEECSC-HHHHHHHHHHHHHHTTTCCSSCEEEEEEETTT---CHHHHHHTTCCSSSEEEEEE-SSCCEEEES
T ss_pred             CCeEEEEEEcCC-cchHHHHHHHHHHHHHhcCCCceEEEEeeccc---CHhHHhhCCEEeccHhhhcC-CCcceeecC
Confidence            345566666554 65665555666766664 33  7888999999   55699999999999977432 233445555

>d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Plant peroxiredoxin
species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]

Probab=82.87  E-value=4.3  Score=30.90  Aligned_cols=57  Identities=11%  Similarity=0.016  Sum_probs=41.2

Q ss_pred             CCCEEEEEEe-CCCCHHH-HhhhhHHHHHHHH---cCCcEEEEEeCCCchhHHHHHHHcCcC
Q 018973          138 KNKLVVVEFA-ASRSLDS-SKIYPFMVDLSRQ---CNDVEFILVMGDESEKTKELCEREKIK  194 (348)
Q Consensus       138 ~~k~vvV~F~-a~wC~~C-~~~~p~l~~la~~---~~~v~f~~vd~d~~~~~~~l~~~~~V~  194 (348)
                      +++.||+.|| +.|.+.| ....+.+.+..++   .....++.+.+|........+...+..
T Consensus        34 ~gk~vVl~f~P~afT~~Ct~e~~~~~~~~~d~~~~~g~~~v~~isvd~~~~~~~~~~~~~~~   95 (162)
T d1tp9a1          34 AGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVNDPFVMKAWAKSYPEN   95 (162)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHTCTTC
T ss_pred             CCCeEEEEEEecccchhhhhhcchHHHHhhhHHHHcCCcceeeeeccchhhhhhhhhhcccc
Confidence            5788888888 7899999 5677777776553   334677777777766666777777754

>d1v2aa2 c.47.1.5 (A:1-83) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-6 [TaxId: 123217]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-6 [TaxId: 123217]

Probab=81.60  E-value=5.5  Score=26.55  Aligned_cols=74  Identities=12%  Similarity=0.055  Sum_probs=47.3

Q ss_pred             EEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCCChHHHHHHH
Q 018973          259 DVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEI  338 (348)
Q Consensus       259 ~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~~~~~L~~~l  338 (348)
                      .|+.+.|++|+++.-.+.+.    +=.+.+..||........++.+..-...+|+++  .+|..+.     +-..+.+.|
T Consensus         3 LY~~~~Sp~~~~v~~~l~~~----gi~~e~~~v~~~~~~~~~~~~~~nP~g~VP~L~--~~g~~l~-----eS~aI~~YL   71 (83)
T d1v2aa2           3 YYYSLISPPCQSAILLAKKL----GITLNLKKTNVHDPVERDALTKLNPQHTIPTLV--DNGHVVW-----ESYAIVLYL   71 (83)
T ss_dssp             EEECTTCHHHHHHHHHHHHH----TCCCEEEECCTTCHHHHHHHHHHCTTCCSCEEE--ETTEEEE-----SHHHHHHHH
T ss_pred             EECCCCChHHHHHHHHHHHh----CCCceEEEEeCCCCcchHHHHHHhhccCCCEEE--EccceeE-----cHHHHHHHH
Confidence            46789999999975444332    223667777765544334465555567899886  4776554     445677888


Q ss_pred             HHHhC
Q 018973          339 LRYQG  343 (348)
Q Consensus       339 ~~~~~  343 (348)
                      .+..+
T Consensus        72 ~~~~~   76 (83)
T d1v2aa2          72 VETYA   76 (83)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            76654