Citrus Sinensis ID: 018981

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------35
Protein Sequence
MFAMNPQPLQARPYIDTEEHDVAQTPIPIQNGSKQGDRYDEPEEVEDEAGASSVNRKSNDRGGSSVQSSTSTRTSELTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPSTVPSSAFAQPQNIMSGGSASNGSKLSQRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQFTSSKATFNIASANSNPSNGSAPPESVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHELETSSDIKPATTEAENSYANQDEQGSPHETKPAPLDPQNHSMRSNEQDLQEAMDELANASGSDFEIPSNFDEQVDVDDSNLGTDWLDT
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccEEEEccccccHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccEEEEEccccHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccEEEHHHHHHHHHHcccccccEEEcccccccccccccccccccccccccHHEccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccEEccccccccEEccccccccccccc
Coil and Loop (DISEMBL)
mfamnpqplqarpyidteehdvaqtpipiqngskqgdrydepeevedeagassvnrksndrggssvqsststrtseltvayegevyvfpavtPHKVQALLLLLgecdipstvpssafaqpqnimsggsasngskLSQRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQrkngqftsskATFNIasansnpsngsappesVSRICqhcgisekltpamrrgpagprtlcnacglmwankgtlrdltkgarnicfeqheletssdikpatteaensyanqdeqgsphetkpapldpqnhsmrsNEQDLQEAMDELAnasgsdfeipsnfdeqvdvddsnlgtdwldt
Flexible Loop (DISEMBL)
mfamnpqplQARPYIDTEEHDVAqtpipiqngskqgdrYDEPEEVEdeagassvnrksndrggssvqsststrtseLTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPSTVPSSAFAQPQNImsggsasngsklSQRIASLVrfrekrkersfekkiryscrKEVAqrmqrkngqftssKATFNIASANSNPSNGSAPPESVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEqheletssdikpATTEAENSYanqdeqgspheTKPAPLDPQNHSMRSNEQDLQEAMDELANASGSDFeipsnfdeqvdvddsnlgtdwldt
Low Complexity Region (SEG)
MFAMNPQPLQARPYIDTEEHDVAQTPIPIQNGSKQGDRYDEPEEVEDEAGASSVNRKSNDRGGssvqsststrtsELTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPSTVPSSAFAQPQNIMSGGSASNGSKLSQRIASLVrfrekrkersfekkIRYSCRKEVAQRMQRKNGQFTSSKATFNIasansnpsngsappesVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHELETSSDIKPATTEAENSYANQDEQGSPHETKPAPLDPQNHSMRSNEQDLQEAMDELANASGSDFEIPSNFDEQVDVDDSNLGTDWLDT
Disordered region (IsUnstruct)
****************************************************************************LTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPS***********************************************************************************************ICQHCGIS************GPRTLCNACGLMWANKGTLRDLTKGARNICFE*******************************************************************************************
Disordered Region (DISOPRED)
********************************************************************************YEGEVYVFPAVTPHKVQA******************************************************************************FTSSKATFNIASANSNPSNGSAPPESVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWA************************************************************************************FEIPSNFDEQVDVDDSNL**DW***
Disordered Region (DISEMBL)
MFAMNPQPLQARPYIDTEEHDVAQTPIPIQNG*******************************************ELTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPSTVPSSAFAQPQNIMS*********LSQRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQFTSSKATFNIASAN*************SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHELETSSDIKPATT*******************PAPLDPQNHSMRSNEQDLQEAMDELANASGSDFEIPSNFDEQVDVDDSNLGTDWLDT
Disordered Region (DISPRO)
************************************************************************RTSELTVAYEGEVYVFPAVTPHKVQALLLLLGECDI****************************QRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKN******************************R*CQ*C*ISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDL************************************************************DLQEAMDELANASGSDFEIPSNFDEQVDVDDSNLGTDWLDT
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFAMNPQPLQARPYIDTEEHDVAQTPIPIQNGSKQGDRYDEPEEVEDEAGASSVNRKSNDRGGSSVQSSTSTRTSELTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPSTVPSSAFAQPQNIMSGGSASNGSKLSQRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQFTSSKATFNIASANSNPSNGSAPPESVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHELETSSDIKPATTEAENSYANQDEQGSPHETKPAPLDPQxxxxxxxxxxxxxxxxxxxxxxxxDFEIPSNFDEQVDVDDSNLGTDWLDT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	348	2.2.26 [Sep-21-2011]
Q8GXL7	297	GATA transcription factor	yes	no	0.497	0.582	0.554	3e-50
Q8H1G0	302	GATA transcription factor	no	no	0.557	0.642	0.504	2e-48
Q9LRH6	309	GATA transcription factor	no	no	0.494	0.556	0.534	1e-41
Q93WK5	727	Two-component response re	no	no	0.143	0.068	0.52	1e-07
A2YQ93	742	Two-component response re	N/A	no	0.120	0.056	0.5	2e-06
Q0D3B6	742	Two-component response re	no	no	0.120	0.056	0.5	2e-06
Q550D5	872	Transcription factor stal	yes	no	0.117	0.047	0.534	3e-06
Q9LKL2	618	Two-component response re	no	no	0.155	0.087	0.444	3e-06
Q55C49	1006	GATA zinc finger domain-c	no	no	0.094	0.032	0.628	3e-06
Q9LVG4	495	Two-component response re	no	no	0.140	0.098	0.489	4e-06

>sp|Q8GXL7|GAT24_ARATH GATA transcription factor 24 OS=Arabidopsis thaliana GN=GATA24 PE=2 SV=2

 Score =  199 bits (505), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 102/184 (55%), Positives = 132/184 (71%), Gaps = 11/184 (5%)

Query: 76  ELTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPSTVPSSAFAQPQNIMSGGSASNGSKL 135
           +LT++++G+VYVF  V+P KVQA+LLLLG  ++P T+P++  +  QN    G +    +L
Sbjct: 79  QLTLSFQGQVYVFDRVSPEKVQAVLLLLGGREVPHTLPTTLGSPHQNNRVLGLSGTPQRL 138

Query: 136 S--QRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQFTSSKATFNIASANSNP 193
           S  QR+ASL+RFREKRK R+F+K IRY+ RKEVA RMQRK GQFTS+K++ N  S ++  
Sbjct: 139 SVPQRLASLLRFREKRKGRNFDKTIRYTVRKEVALRMQRKKGQFTSAKSS-NDDSGSTGS 197

Query: 194 SNGSAPPESVSR--------ICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLR 245
             GS    +V          +C+HCG SEK TP MRRGP GPRTLCNACGLMWANKGTLR
Sbjct: 198 DWGSNQSWAVEGTETQKPEVLCRHCGTSEKSTPMMRRGPDGPRTLCNACGLMWANKGTLR 257

Query: 246 DLTK 249
           DL+K
Sbjct: 258 DLSK 261

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8H1G0|GAT28_ARATH GATA transcription factor 28 OS=Arabidopsis thaliana GN=GATA28 PE=2 SV=1

 Score =  192 bits (489), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 109/216 (50%), Positives = 140/216 (64%), Gaps = 22/216 (10%)

Query: 71  STRTSELTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPSTVPSSAFAQPQN--IMSGGS 128
           S +  +LT++++G+VYVF +V P KVQA+LLLLG  ++P   P    +  QN  + S   
Sbjct: 78  SEQGDQLTLSFQGQVYVFDSVLPEKVQAVLLLLGGRELPQAAPPGLGSPHQNNRVSSLPG 137

Query: 129 ASNGSKLSQRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQFTSSKATFNIAS 188
                 + QR+ASLVRFREKRK R+F+KKIRY+ RKEVA RMQR  GQFTS+K+  N  +
Sbjct: 138 TPQRFSIPQRLASLVRFREKRKGRNFDKKIRYTVRKEVALRMQRNKGQFTSAKSN-NDEA 196

Query: 189 ANSNPSNGS----------APPESVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMW 238
           A++  S GS          A  + +S  C+HCGI EK TP MRRGPAGPRTLCNACGLMW
Sbjct: 197 ASAGSSWGSNQTWAIESSEAQHQEIS--CRHCGIGEKSTPMMRRGPAGPRTLCNACGLMW 254

Query: 239 ANKGTLRDLTKG----ARNICFEQHE---LETSSDI 267
           ANKG  RDL+K     A+N+   ++E   LET   I
Sbjct: 255 ANKGAFRDLSKASPQTAQNLPLNKNEDANLETDHQI 290

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRH6|GAT25_ARATH GATA transcription factor 25 OS=Arabidopsis thaliana GN=GATA25 PE=2 SV=2

 Score =  170 bits (431), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 94/176 (53%), Positives = 111/176 (63%), Gaps = 4/176 (2%)

Query: 76  ELTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPSTVPSSA-FAQPQNIMSGGSASNGSK 134
           +LT+++ G+VYVF AV   KV A+L LLG     +  P     AQ QN M      +   
Sbjct: 83  QLTISFRGQVYVFDAVGADKVDAVLSLLGGSTELAPGPQVMELAQQQNHMPVVEYQSRCS 142

Query: 135 LSQRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQFTSSKATFNIASANSNPS 194
           L QR  SL RFR+KR  R FEKK+RY  R+EVA RM R  GQFTSSK T    + NS   
Sbjct: 143 LPQRAQSLDRFRKKRNARCFEKKVRYGVRQEVALRMARNKGQFTSSKMT--DGAYNSGTD 200

Query: 195 NGSAPPESVSRI-CQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTK 249
             SA  ++   I C HCGIS K TP MRRGP+GPRTLCNACGL WAN+GTLRDL+K
Sbjct: 201 QDSAQDDAHPEISCTHCGISSKCTPMMRRGPSGPRTLCNACGLFWANRGTLRDLSK 256

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WK5|APRR7_ARATH Two-component response regulator-like APRR7 OS=Arabidopsis thaliana GN=APRR7 PE=2 SV=1

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/50 (52%), Positives = 36/50 (72%)

Query: 133 SKLSQRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQFTSSKA 182
           +K+SQR A+L +FR+KRKER F KK+RY  RK++A++  R  GQF    A
Sbjct: 664 NKISQREAALTKFRQKRKERCFRKKVRYQSRKKLAEQRPRVRGQFVRKTA 713

Controls photoperiodic flowering response. Seems to be one of the component of the circadian clock. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of APRR9, APRR7, APRR5, APRR3 and APPR1 result to circadian waves that may be at the basis of the endogenous circadian clock.

Arabidopsis thaliana (taxid: 3702)

>sp|A2YQ93|PRR37_ORYSI Two-component response regulator-like PRR37 OS=Oryza sativa subsp. indica GN=PRR37 PE=2 SV=2

 Score = 53.9 bits (128), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 32/42 (76%)

Query: 137 QRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQFT 178
            R+A++++FR+KRKER+F KK+RY  RK +A++  R  GQF 
Sbjct: 681 HRVAAVIKFRQKRKERNFGKKVRYQSRKRLAEQRPRVRGQFV 722

Controls photoperiodic flowering response. Seems to be one of the component of the circadian clock. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of PRR73, PRR37, PRR95, PRR59 and PPR1 result to circadian waves that may be at the basis of the endogenous circadian clock.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q0D3B6|PRR37_ORYSJ Two-component response regulator-like PRR37 OS=Oryza sativa subsp. japonica GN=PRR37 PE=2 SV=1

 Score = 53.9 bits (128), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 32/42 (76%)

Query: 137 QRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQFT 178
            R+A++++FR+KRKER+F KK+RY  RK +A++  R  GQF 
Sbjct: 681 HRVAAVIKFRQKRKERNFGKKVRYQSRKRLAEQRPRVRGQFV 722

Controls photoperiodic flowering response. Seems to be one of the component of the circadian clock. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of PRR73, PRR37, PRR95, PRR59 and PPR1 result to circadian waves that may be at the basis of the endogenous circadian clock.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q550D5|GTAA_DICDI Transcription factor stalky OS=Dictyostelium discoideum GN=stkA PE=1 SV=1

 Score = 53.1 bits (126), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/43 (53%), Positives = 28/43 (65%), Gaps = 2/43 (4%)

Query: 200 PESVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKG 242
           P S  R C+ CG S+  TP  RRGP+G  +LCNACG+ W  KG
Sbjct: 287 PMSAPRSCEFCGSSQ--TPTWRRGPSGKGSLCNACGIKWRLKG 327

Probable transcription factor. Seems to act on the expression of the genes culC, culD, rnpA and sigB.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9LKL2|APRR1_ARATH Two-component response regulator-like APRR1 OS=Arabidopsis thaliana GN=APRR1 PE=1 SV=1

 Score = 53.1 bits (126), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 34/54 (62%)

Query: 133 SKLSQRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQFTSSKATFNI 186
           +KL +R  +L++FR KR +R F+KKIRY  RK +A+R  R  GQF       N+
Sbjct: 528 NKLDRREEALLKFRRKRNQRCFDKKIRYVNRKRLAERRPRVKGQFVRKMNGVNV 581

Controls photoperiodic flowering response. Component of the circadian clock. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of APRR9, APRR7, APRR5, APRR3 and APPR1 result to circadian waves that may be at the basis of the endogenous circadian clock. Positive regulator of CCA1 and LHY expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q55C49|GTAG_DICDI GATA zinc finger domain-containing protein 7 OS=Dictyostelium discoideum GN=gtaG PE=4 SV=1

 Score = 53.1 bits (126), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/35 (62%), Positives = 25/35 (71%), Gaps = 2/35 (5%)

Query: 207 CQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANK 241
           C +CG   K TP  RRGP+GP TLCNACGL +A K
Sbjct: 842 CHNCGT--KNTPEWRRGPSGPATLCNACGLAYAKK 874

Dictyostelium discoideum (taxid: 44689)

>sp|Q9LVG4|APRR3_ARATH Two-component response regulator-like APRR3 OS=Arabidopsis thaliana GN=APRR3 PE=1 SV=1

 Score = 52.8 bits (125), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 35/49 (71%)

Query: 129 ASNGSKLSQRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQF 177
           +S   + +QR A+L++FR KRKER FEKK+RY  RK++A++     GQF
Sbjct: 433 SSGSDRWAQREAALMKFRLKRKERCFEKKVRYHSRKKLAEQRPHVKGQF 481

Controls photoperiodic flowering response. Component of the circadian clock. Controls the degradation of APRR1/TOC1 by the SCF(ZTL) complex. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of APRR9, APRR7, APRR5, APRR3 and APPR1 result to circadian waves that may be at the basis of the endogenous circadian clock.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	348
359494710	371	PREDICTED: GATA transcription factor 28-	0.982	0.921	0.555	1e-103
356519473	1174	PREDICTED: dynamin-related protein 3A-li	0.790	0.234	0.585	4e-95
356528009	358	PREDICTED: GATA transcription factor 24-	0.810	0.787	0.574	9e-95
224141135	368	predicted protein [Populus trichocarpa]	0.758	0.717	0.576	1e-83
255572874	327	GATA transcription factor, putative [Ric	0.910	0.969	0.542	6e-81
357476233	334	GATA transcription factor [Medicago trun	0.764	0.796	0.544	2e-80
359492959	368	PREDICTED: GATA transcription factor 24-	0.908	0.858	0.483	9e-77
255563366	313	hypothetical protein RCOM_0886650 [Ricin	0.606	0.674	0.601	4e-74
449469793	328	PREDICTED: GATA transcription factor 24-	0.905	0.960	0.508	1e-73
302142082	324	unnamed protein product [Vitis vinifera]	0.790	0.848	0.498	3e-72

>gi|359494710|ref|XP_002268872.2| PREDICTED: GATA transcription factor 28-like [Vitis vinifera]

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 206/371 (55%), Positives = 246/371 (66%), Gaps = 29/371 (7%)

Query: 1   MFAMNPQPLQARPYIDTEEHDVAQTPIPIQ-NGSKQGDRYDEPEEVEDEAGASSVNRKSN 59
           M  +NP+PLQA P+   EEHD     +PI+ NG++ G   ++      EA +     + +
Sbjct: 1   METVNPRPLQALPF---EEHDDDSMQVPIEINGNEGGFEVEDVTGGGGEAVSGGEGGRMS 57

Query: 60  DRGGSSVQSSTSTRTSELTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPSTVPSSAFAQ 119
                   S  + RTSELT+++EGEVYVF AVTP KVQA+LLLLG  + PS+V SS F  
Sbjct: 58  SVNADEKSSVVAQRTSELTISFEGEVYVFHAVTPDKVQAVLLLLGGHETPSSVSSSEFLL 117

Query: 120 PQNIMSGGSASNGSKLSQRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQFTS 179
            QN+     AS  S L +RIASL+RFREKRKER FEKKIRY+CRKEVAQRM RKNGQF S
Sbjct: 118 QQNMKGLVDASKCSNLPRRIASLIRFREKRKERCFEKKIRYTCRKEVAQRMHRKNGQFAS 177

Query: 180 SKATFNIASANSNPSNGSAPPESVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWA 239
            K +F +A+ N +PS+G+  PE V R CQHCGISEK TPAMRRGPAGPR+LCNACGLMWA
Sbjct: 178 VKESFKMATGNWDPSSGTPCPEYVFRRCQHCGISEKSTPAMRRGPAGPRSLCNACGLMWA 237

Query: 240 NKGTLRDLTKGARNICFEQHELETSSDIKPATTEAENSYANQDEQGSPHETKPAPLDPQN 299
           NKGTLRDL+KG+R I F Q ELETS DIKP T E E +Y N DE GS  E KP PL+  N
Sbjct: 238 NKGTLRDLSKGSRMIPFGQDELETSDDIKPVTMEREKAYGNHDELGSSEEMKPVPLESGN 297

Query: 300 HSM-RSNEQDL------------------------QEAMDELANASGSDFEIPSNFDEQV 334
            +  + NEQDL                        QE  + LAN SG+DFEIP+NFDEQV
Sbjct: 298 PTTGQQNEQDLLETAVALVDHLPVPVDNSSINPDEQENTEVLANVSGTDFEIPTNFDEQV 357

Query: 335 DVDDSNLGTDW 345
           DV DSN+ TDW
Sbjct: 358 DVGDSNMATDW 368

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519473|ref|XP_003528397.1| PREDICTED: dynamin-related protein 3A-like [Glycine max]

 Score =  354 bits (908), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 181/309 (58%), Positives = 221/309 (71%), Gaps = 34/309 (11%)

Query: 68  SSTSTRTSELTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPSTVPSSAFAQPQN---IM 124
           S+   R SELT+++EGEVYVFPAVTP KVQA+LLLLG  ++ ++ P+S     QN   I 
Sbjct: 51  SAMHARASELTISFEGEVYVFPAVTPEKVQAVLLLLGAQEMTNSAPTSDILLQQNYQDIR 110

Query: 125 SGGSASNGSKLSQRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQFTSSKATF 184
                S  SKLS+R ASLVRFREKRKER FEKKIRYSCRKEVAQRM RKNGQF S K  +
Sbjct: 111 EINDPSRSSKLSRRFASLVRFREKRKERCFEKKIRYSCRKEVAQRMHRKNGQFASMKEDY 170

Query: 185 NIASANSNPSNGSAPPESVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL 244
              + N + SNG+  PES  R CQHCGISEK TPAMRRGPAGPR+LCNACGLMWANKGTL
Sbjct: 171 KSPAENWDSSNGTPCPESTERRCQHCGISEKSTPAMRRGPAGPRSLCNACGLMWANKGTL 230

Query: 245 RDLTKGARNICFEQHELETSSDIKPATTEAENSYANQDEQGSPHETKPAPLDP------- 297
           RDL+K AR I FEQ+EL+TS+DIKP+TTEAE+S+A QD++GSP ETKP  +D        
Sbjct: 231 RDLSKAAR-IAFEQNELDTSADIKPSTTEAEHSFAKQDKEGSPEETKPVQMDSSRSPEKT 289

Query: 298 --------------------QNHSMRSNEQDLQEAMDELANASGSDFEIPSNFDEQVDVD 337
                               +NH++  +EQD    +++LA+ASG++FEIP+ FD+QVD+D
Sbjct: 290 NDQFIIGTAESVTDNLSIQVENHALSLHEQD---TLEDLADASGTEFEIPAGFDDQVDID 346

Query: 338 DSNLGTDWL 346
           DSN+ T WL
Sbjct: 347 DSNMRTYWL 355

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528009|ref|XP_003532598.1| PREDICTED: GATA transcription factor 24-like [Glycine max]

 Score =  353 bits (905), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 178/310 (57%), Positives = 223/310 (71%), Gaps = 28/310 (9%)

Query: 64  SSVQSSTSTRTSELTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPSTVPSSAFAQPQN- 122
           ++  S+   R SELT+++EGEVYVFPAVTP KVQA+LLLLG  ++P++ P+S F   QN 
Sbjct: 50  ANASSAMRARASELTISFEGEVYVFPAVTPEKVQAVLLLLGAQEMPNSAPTSDFLLQQNY 109

Query: 123 --IMSGGSASNGSKLSQRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQFTSS 180
             I      S  SKLS+R ASLVRFREKRKER FEKKIRYSCRKEVAQRM RKNGQF S 
Sbjct: 110 QDIREINDPSRSSKLSRRFASLVRFREKRKERCFEKKIRYSCRKEVAQRMHRKNGQFASL 169

Query: 181 KATFNIASANSNPSNGSAPPESVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWAN 240
           K  +   + N + SNG+  P+S  R CQHCGISEK TPAMRRGPAGPR+LCNACGLMWAN
Sbjct: 170 KEDYKSPAENWDSSNGTPCPDSTERRCQHCGISEKSTPAMRRGPAGPRSLCNACGLMWAN 229

Query: 241 KGTLRDLTKGARNICFEQHELETSSDIKPATTEAENSYANQDEQGSPHETKPAPLDPQNH 300
           KGTLRDL+K  R I FEQ+EL+TS+DIKP+TTEA++SYA Q ++GSP ETKP  +D +  
Sbjct: 230 KGTLRDLSKAGR-IAFEQNELDTSADIKPSTTEAKHSYAKQGKEGSPEETKPVQMDSRRS 288

Query: 301 SMRSNEQDL------------------------QEAMDELANASGSDFEIPSNFDEQVDV 336
             ++NEQ +                        Q+ +++LA+ASG++FEIP+ FD+QVD+
Sbjct: 289 PEKTNEQFIIGTAESVTNNLSVRLENHALILHEQDTLEDLADASGTEFEIPAGFDDQVDI 348

Query: 337 DDSNLGTDWL 346
           DD+N+ T WL
Sbjct: 349 DDANMRTYWL 358

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141135|ref|XP_002323930.1| predicted protein [Populus trichocarpa] gi|222866932|gb|EEF04063.1| predicted protein [Populus trichocarpa]

 Score =  316 bits (809), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 169/293 (57%), Positives = 199/293 (67%), Gaps = 29/293 (9%)

Query: 71  STRTSELTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPSTVPSSAFAQPQNIMSGGSAS 130
           +TRTSELT+A+EGEVYVFPAVTP KVQA+L LLGE +  +  P+S F   QN  S G AS
Sbjct: 77  TTRTSELTIAFEGEVYVFPAVTPSKVQAVLFLLGEPETSTIAPNSDFFLQQNARSAGDAS 136

Query: 131 NGSKLSQRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQFTSSKATFNIASAN 190
            G K S+RIASL RFREKRKER FEKK+RY+CRKEVAQRM RK GQF SS   ++  + N
Sbjct: 137 QGLKFSRRIASLERFREKRKERCFEKKVRYTCRKEVAQRMHRKKGQFASSNDCYSTDTGN 196

Query: 191 SNPSNGSAPPESVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKG 250
             PSN    PESV   CQHCGIS K TPAMRRGPAGPRTLCNACGLMWANKGTLRDL+KG
Sbjct: 197 WEPSNSMPNPESVLLRCQHCGISAKDTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKG 256

Query: 251 ARNICFEQHELETSSDIKPATTEAENSYANQDEQGSPHETKPAPLDPQNHSMRSNEQDLQ 310
            R+I F Q+E   + D KP   E EN +AN +E+ S  E+KP PL+ +N S+R NEQD+ 
Sbjct: 257 GRHISFNQNE-PVTPDFKPLNMELENPFANPEEEESQEESKPVPLESEN-SIRPNEQDML 314

Query: 311 E---------------------------AMDELANASGSDFEIPSNFDEQVDV 336
           E                            +DEL + SGS+FEIP +FD+QV V
Sbjct: 315 ETDKNVPDPLPMHVENSSVNLDDEDFENTLDELGDVSGSEFEIPEHFDDQVVV 367

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572874|ref|XP_002527369.1| GATA transcription factor, putative [Ricinus communis] gi|223533288|gb|EEF35041.1| GATA transcription factor, putative [Ricinus communis]

 Score =  307 bits (786), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 185/341 (54%), Positives = 220/341 (64%), Gaps = 24/341 (7%)

Query: 1   MFAMNPQPLQARPYIDTEEHDVAQTPIPIQNGS-KQGDRYDEPEEVEDEAGASS-VNRKS 58
           M A NP PLQARPY   E+H   Q PI I +   ++ +  D  ++VED    +S VN   
Sbjct: 1   MAAANPLPLQARPY---EDH--VQAPIQIDDDDVREYEDGDAMDDVEDNTPMNSGVNVAE 55

Query: 59  NDRGGSSVQSSTSTRTSELTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPSTVPSSAFA 118
           +  GG  V S    RTSELT+++EGEV+VFPAVTP KVQA+LLLLG  DIP+ VP+    
Sbjct: 56  HGGGGVIVAS----RTSELTLSFEGEVFVFPAVTPEKVQAVLLLLGGRDIPTAVPTIEVP 111

Query: 119 QPQNIMSGGSASNGSKLSQRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQFT 178
             QN          S LS+RIASLVRFREKRKER F+KKIRY+ RKEVAQRM RKNGQF 
Sbjct: 112 CVQNNRGVDDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFA 171

Query: 179 SSKATFNIASANSNPS---NGSAPPESVSRICQHCGISEKLTPAMRRGPAGPRTLCNACG 235
           S K +   +S +S  S   +G+  PE+V R CQHCG+SE  TPAMRRGPAGPRTLCNACG
Sbjct: 172 SLKESSGGSSWDSAQSCLQDGTPRPETVVRRCQHCGVSENNTPAMRRGPAGPRTLCNACG 231

Query: 236 LMWANKGTLRDLTKGARNICFEQHELETSSDIKPATTEAENSYANQDEQGSPHETKPAPL 295
           LMWANKGTLRDL+KG RN   +Q E ET  D+KP+  E E S  NQDE    H  + A  
Sbjct: 232 LMWANKGTLRDLSKGGRNASTDQIEPETPIDVKPSIMEGEFS-GNQDE----HVLQEASE 286

Query: 296 D-----PQNHSMRSNEQDLQEAMDELANASGSDFEIPSNFD 331
           D     P      S + D QE + ELAN S +D +IPSNFD
Sbjct: 287 DLTSTLPMRVVHSSADDDDQEPLVELANPSDADLDIPSNFD 327

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357476233|ref|XP_003608402.1| GATA transcription factor [Medicago truncatula] gi|355509457|gb|AES90599.1| GATA transcription factor [Medicago truncatula]

 Score =  305 bits (782), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 166/305 (54%), Positives = 203/305 (66%), Gaps = 39/305 (12%)

Query: 72  TRTSELTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPSTVPSSAFAQPQN---IMSGGS 128
           +R SELT+++EGEVYVFP+VTP KVQA+LLLL   +  ++VP+S F   QN   I     
Sbjct: 39  SRASELTISFEGEVYVFPSVTPEKVQAVLLLLDGKETRNSVPTSDFPVQQNCRDIWGKND 98

Query: 129 ASNGSKLSQRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQFTSSKATFNIAS 188
               SK+S+R ASLVRFREKRKER FEKKIRY+CRKEVA+RMQRKNGQF S K   +  +
Sbjct: 99  PFRNSKVSRRSASLVRFREKRKERCFEKKIRYTCRKEVAERMQRKNGQFASLKEECSSPA 158

Query: 189 ANSNPSNGSAPPESVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLT 248
            N + SNGS  PES+ R CQHCGI+ K TP MRRGPAGPRTLCNACGLMWANKGTLRDL 
Sbjct: 159 ENQDFSNGSPFPESIERRCQHCGIAAKSTPVMRRGPAGPRTLCNACGLMWANKGTLRDLG 218

Query: 249 KGARNICFEQHELETSSDIKPATTEAENSYANQDEQGSPHETKPAPLDP----------- 297
           K  R I FEQ EL+ S      TT+ ENS A QD++ SPH TKP P+D            
Sbjct: 219 KAGR-IAFEQTELDFS------TTDPENSCAAQDKKESPHATKPLPMDARQSPEMIIEQY 271

Query: 298 ----------------QNHSMRSNEQDLQEAMDELANASGSDFEIPSNFDEQVDVDDSNL 341
                           +N+++  +EQD    M +  +ASG++FEIP  FD+QV++DDSN+
Sbjct: 272 MLEAAEAVTDNLSIQVENNALDLHEQD--NTMADFVDASGTEFEIPLCFDDQVNIDDSNM 329

Query: 342 GTDWL 346
            T WL
Sbjct: 330 RTYWL 334

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492959|ref|XP_002283738.2| PREDICTED: GATA transcription factor 24-like [Vitis vinifera]

 Score =  293 bits (750), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 185/383 (48%), Positives = 222/383 (57%), Gaps = 67/383 (17%)

Query: 1   MFAMNPQPLQARPYIDTEEHDVAQTPIPIQN--------GSKQGDRYDEPEEVEDEAGAS 52
           M   NPQPLQARP+   E+H   Q PI I +        G       D  ++V+D+   +
Sbjct: 1   MAMANPQPLQARPF---EDH--MQIPIQIHDDDADFEVDGGASAPADDAMDDVDDDPHIN 55

Query: 53  SVNRKSNDRGGSSVQSSTSTRTSELTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPSTV 112
           S+N    D  G  V S    RTSELT+A+EGEVYVFPAVTP KVQA+LLLLG  DIP+ V
Sbjct: 56  SIN--PIDHAGVVVAS----RTSELTLAFEGEVYVFPAVTPEKVQAVLLLLGGRDIPTGV 109

Query: 113 PSSAFAQPQNIMSGGSASNGSKLSQRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQR 172
           P+      Q+    G     S LS+RIASLVRFREKRKER F+KKIRY+ RKEVAQRM R
Sbjct: 110 PTIEVPFDQSNRGVGDLPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHR 169

Query: 173 KNGQFTSSKAT---FNIASANSNPSNGSAPPESVSRICQHCGISEKLTPAMRRGPAGPRT 229
           KNGQF S K +    N  SA S   + +  PE+V R CQHCG+SE  TPAMRRGPAGPRT
Sbjct: 170 KNGQFASLKESSGPSNWDSAQSLQGDTTPRPETVLRRCQHCGVSENSTPAMRRGPAGPRT 229

Query: 230 LCNACGLMWANKGTLRDLTKGARNICFEQHELETSSDIKPATTEAENSYANQDEQGSP-- 287
           LCNACGLMWANKGTLRDL+KG RN+  +Q EL T  D+KP+  E EN   +QDE  +P  
Sbjct: 230 LCNACGLMWANKGTLRDLSKGGRNLSLDQIELGTPIDVKPSIMEGENFSGSQDEHITPED 289

Query: 288 ---------------------------------HETKPAPLDPQNHSM------RSNEQD 308
                                            HET     D  +H++       S   D
Sbjct: 290 PSKAVAERTDNPSVNADEEVMSSGVYPSSFTDLHETA----DDLSHTLPMGIVHSSGNLD 345

Query: 309 LQEAMDELANASGSDFEIPSNFD 331
            QE + ELANAS ++ +IP NFD
Sbjct: 346 DQETLVELANASETEMDIPGNFD 368

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563366|ref|XP_002522686.1| hypothetical protein RCOM_0886650 [Ricinus communis] gi|223538162|gb|EEF39773.1| hypothetical protein RCOM_0886650 [Ricinus communis]

 Score =  284 bits (727), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 145/241 (60%), Positives = 169/241 (70%), Gaps = 30/241 (12%)

Query: 133 SKLSQRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQFTSSKATFNIAS-ANS 191
           SKLS+RIASLVRFREKRKER FEKKIRY+CRKEVAQRM RKNGQF S K  ++  + +N 
Sbjct: 72  SKLSRRIASLVRFREKRKERCFEKKIRYTCRKEVAQRMHRKNGQFASLKDCYSTGTGSNW 131

Query: 192 NPSNGSAPPESVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGA 251
            PSN +   E +   CQHCG SE  TPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKG 
Sbjct: 132 EPSNTTPQSEPILHRCQHCGTSENATPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGG 191

Query: 252 RNICFEQHELETSSDIKPATTEAENSYANQDEQGSPHETKPAPLDPQNHSMRSNEQDL-- 309
           R++ F+Q+EL T  D KP+T E EN Y NQDE+GSP E+KP  LD +N SMR N+QDL  
Sbjct: 192 RHVSFDQNELGT-PDFKPSTMEQENPYVNQDEEGSPEESKPVLLDSEN-SMRPNDQDLLE 249

Query: 310 -------------------------QEAMDELANASGSDFEIPSNFDEQVDVDDSNLGTD 344
                                    QE +D L N SGS+FEIP NFD+QVD+ D N+G++
Sbjct: 250 TDDTVTDPLPTHVENSSVNLDDEDFQETLDGLGNVSGSEFEIPGNFDDQVDIGDCNMGSE 309

Query: 345 W 345
           W
Sbjct: 310 W 310

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469793|ref|XP_004152603.1| PREDICTED: GATA transcription factor 24-like [Cucumis sativus] gi|449511418|ref|XP_004163951.1| PREDICTED: GATA transcription factor 24-like [Cucumis sativus]

 Score =  282 bits (722), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 175/344 (50%), Positives = 215/344 (62%), Gaps = 29/344 (8%)

Query: 1   MFAMNPQPLQARPYIDTEEHDVAQTPIPI------QNGSKQGDRYDEPEEVEDEAGASSV 54
           M A NPQPLQARP+   +EH   Q P  +            G    +  +  +EA  +SV
Sbjct: 1   MAAANPQPLQARPF---QEH--VQVPSMMADDDGEYEDGGGGGGGGDVMDDVEEAHMTSV 55

Query: 55  NRKSNDRGGSSVQSSTSTRTSELTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPSTVPS 114
           +  ++   G  V +S   R SELT+++EGEVYVFP VTP KVQA+LLLLG  D+P+ VP+
Sbjct: 56  SVANH---GGLVMAS---RASELTLSFEGEVYVFPEVTPEKVQAVLLLLGGRDVPADVPT 109

Query: 115 SAFAQPQNIMSGGSASNGSKLSQRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKN 174
                  N          S LS+RIASLVRFREKRKER F+KKIRY+ RKEVAQRM RKN
Sbjct: 110 MEVPYDHNNRGMVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKN 169

Query: 175 GQFTSSKATFNIA---SANSNPSNGSAPPESVSRICQHCGISEKLTPAMRRGPAGPRTLC 231
           GQF S K +   +   SA+S   +G+   E+V R CQHCG+SE  TPAMRRGPAGPRTLC
Sbjct: 170 GQFASLKESSGASSWESAHSCLQDGTR-SETVLRKCQHCGVSENNTPAMRRGPAGPRTLC 228

Query: 232 NACGLMWANKGTLRDLTKGARNICFEQHELETSSDIKPATTEAENSYANQDE----QGSP 287
           NACGLMWANKGTLRDL+KG RN+  +  E ET  D+KP   E E S   QDE    + + 
Sbjct: 229 NACGLMWANKGTLRDLSKGGRNVSLDHMEPETPMDVKPVIMEGEFS-GIQDEHDINETTG 287

Query: 288 HETKPAPLDPQNHSMRSNEQDLQEAMDELANASGSDFEIPSNFD 331
             T   P+   NHS  SN+ D QE + ELAN S +D +IP+NFD
Sbjct: 288 ELTNSLPMRIVNHS--SND-DEQEPLVELANPSDTDIDIPTNFD 328

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142082|emb|CBI19285.3| unnamed protein product [Vitis vinifera]

 Score =  278 bits (710), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 164/329 (49%), Positives = 198/329 (60%), Gaps = 54/329 (16%)

Query: 43  EEVEDEAGASSVNRKSNDRGGSSVQSSTSTRTSELTVAYEGEVYVFPAVTPHKVQALLLL 102
           ++V+D+   +S+N    D  G  V S    RTSELT+A+EGEVYVFPAVTP KVQA+LLL
Sbjct: 2   DDVDDDPHINSIN--PIDHAGVVVAS----RTSELTLAFEGEVYVFPAVTPEKVQAVLLL 55

Query: 103 LGECDIPSTVPSSAFAQPQNIMSGGSASNGSKLSQRIASLVRFREKRKERSFEKKIRYSC 162
           LG  DIP+ VP+      Q+    G     S LS+RIASLVRFREKRKER F+KKIRY+ 
Sbjct: 56  LGGRDIPTGVPTIEVPFDQSNRGVGDLPKRSNLSRRIASLVRFREKRKERCFDKKIRYTV 115

Query: 163 RKEVAQRMQRKNGQFTSSKAT---FNIASANSNPSNGSAPPESVSRICQHCGISEKLTPA 219
           RKEVAQRM RKNGQF S K +    N  SA S   + +  PE+V R CQHCG+SE  TPA
Sbjct: 116 RKEVAQRMHRKNGQFASLKESSGPSNWDSAQSLQGDTTPRPETVLRRCQHCGVSENSTPA 175

Query: 220 MRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHELETSSDIKPATTEAENSYA 279
           MRRGPAGPRTLCNACGLMWANKGTLRDL+KG RN+  +Q EL T  D+KP+  E EN   
Sbjct: 176 MRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNLSLDQIELGTPIDVKPSIMEGENFSG 235

Query: 280 NQDEQGSP-----------------------------------HETKPAPLDPQNHSM-- 302
           +QDE  +P                                   HET     D  +H++  
Sbjct: 236 SQDEHITPEDPSKAVAERTDNPSVNADEEVMSSGVYPSSFTDLHETA----DDLSHTLPM 291

Query: 303 ----RSNEQDLQEAMDELANASGSDFEIP 327
                S   D QE + ELANAS ++ +IP
Sbjct: 292 GIVHSSGNLDDQETLVELANASETEMDIP 320

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	348
TAIR|locus:505006360	297	ZML1 "ZIM-like 1" [Arabidopsis	0.497	0.582	0.483	1.7e-40
TAIR|locus:2017582	302	ZML2 "ZIM-LIKE 2" [Arabidopsis	0.551	0.635	0.437	1.2e-35
TAIR|locus:2076191	274	GATA1 "GATA transcription fact	0.221	0.281	0.421	1.6e-06
DICTYBASE|DDB_G0277147	872	stkA "GATA zinc finger domain-	0.261	0.104	0.336	1.2e-05
TAIR|locus:2155919	139	GATA16 "GATA transcription fac	0.229	0.575	0.322	1.3e-05
DICTYBASE|DDB_G0285139	640	gtaL "GATA zinc finger domain-	0.359	0.195	0.272	0.00013
DICTYBASE|DDB_G0270756	1006	gtaG "GATA zinc finger domain-	0.324	0.112	0.283	0.00018
DICTYBASE|DDB_G0295707	695	gtaP "GATA zinc finger domain-	0.362	0.181	0.274	0.00025
TAIR|locus:2139594	269	GATA3 "GATA transcription fact	0.241	0.312	0.351	0.00032
TAIR|locus:504955441	197	AT4G16141 [Arabidopsis thalian	0.287	0.507	0.295	0.00048

TAIR|locus:505006360 ZML1 "ZIM-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 401 (146.2 bits), Expect = 1.7e-40, Sum P(2) = 1.7e-40
 Identities = 89/184 (48%), Positives = 114/184 (61%)

Query:    76 ELTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPSTVPSSAFAQPQNIMSGGSASNGSKL 135
             +LT++++G+VYVF  V+P KVQA+LLLLG  ++P T+P++  +  QN    G +    +L
Sbjct:    79 QLTLSFQGQVYVFDRVSPEKVQAVLLLLGGREVPHTLPTTLGSPHQNNRVLGLSGTPQRL 138

Query:   136 S--QRIASLVXXXXXXXXXXXXXXIRYSCRKEVAQRMQRKNGQFTSSKATFNIXXXXXXX 193
             S  QR+ASL+              IRY+ RKEVA RMQRK GQFTS+K++ N        
Sbjct:   139 SVPQRLASLLRFREKRKGRNFDKTIRYTVRKEVALRMQRKKGQFTSAKSS-NDDSGSTGS 197

Query:   194 XXXXXXXXXVSR--------ICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLR 245
                      V          +C+HCG SEK TP MRRGP GPRTLCNACGLMWANKGTLR
Sbjct:   198 DWGSNQSWAVEGTETQKPEVLCRHCGTSEKSTPMMRRGPDGPRTLCNACGLMWANKGTLR 257

Query:   246 DLTK 249
             DL+K
Sbjct:   258 DLSK 261

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2017582 ZML2 "ZIM-LIKE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 91/208 (43%), Positives = 115/208 (55%)

Query:    76 ELTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPSTVPSSAFAQPQN--IMSGGSASNGS 133
             +LT++++G+VYVF +V P KVQA+LLLLG  ++P   P    +  QN  + S        
Sbjct:    83 QLTLSFQGQVYVFDSVLPEKVQAVLLLLGGRELPQAAPPGLGSPHQNNRVSSLPGTPQRF 142

Query:   134 KLSQRIASLVXXXXXXXXXXXXXXIRYSCRKEVAQRMQRKNGQFTSSKATFNIXXXXXXX 193
              + QR+ASLV              IRY+ RKEVA RMQR  GQFTS+K+  +        
Sbjct:   143 SIPQRLASLVRFREKRKGRNFDKKIRYTVRKEVALRMQRNKGQFTSAKSNNDEAASAGSS 202

Query:   194 XXXXXXXXXVSR-------ICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRD 246
                       S         C+HCGI EK TP MRRGPAGPRTLCNACGLMWANKG  RD
Sbjct:   203 WGSNQTWAIESSEAQHQEISCRHCGIGEKSTPMMRRGPAGPRTLCNACGLMWANKGAFRD 262

Query:   247 LTKG----ARNICFEQHE---LETSSDI 267
             L+K     A+N+   ++E   LET   I
Sbjct:   263 LSKASPQTAQNLPLNKNEDANLETDHQI 290

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2076191 GATA1 "GATA transcription factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 35/83 (42%), Positives = 46/83 (55%)

Query:   203 VSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHELE 262
             + R CQHCG +EK TP  R GPAGP+TLCNACG+ + + G L    + A +  F   EL 
Sbjct:   192 MGRKCQHCG-AEK-TPQWRAGPAGPKTLCNACGVRYKS-GRLVPEYRPANSPTFTA-ELH 247

Query:   263 TSSDIKPATTEAENSYANQDEQG 285
             ++S  K    E    Y + D  G
Sbjct:   248 SNSHRK--IVEMRKQYQSGDGDG 268

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0007623 "circadian rhythm" evidence=IEP

DICTYBASE|DDB_G0277147 stkA "GATA zinc finger domain-containing protein 1" [Dictyostelium discoideum (taxid:44689)]

 Score = 134 (52.2 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 35/104 (33%), Positives = 52/104 (50%)

Query:   205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRD-LTKGARNICFEQHELET 263
             R C+ CG S+  TP  RRGP+G  +LCNACG+ W  KG  +D + K +      Q +   
Sbjct:   292 RSCEFCGSSQ--TPTWRRGPSGKGSLCNACGIKWRLKG--KDGIFKPS------QKQQNR 341

Query:   264 SSDIKPATTEAENSYANQDEQGSPHETKPAPLDPQNHSMRSNEQ 307
                I  A  + +    NQ +Q  P + +  P  PQ  + + N+Q
Sbjct:   342 QKPIMSAQKQPKQQQ-NQPQQQQPQQPQQ-PQQPQQQNQQQNQQ 383

GO:0045595 "regulation of cell differentiation" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IMP

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;IMP

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

TAIR|locus:2155919 GATA16 "GATA transcription factor 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 108 (43.1 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 30/93 (32%), Positives = 46/93 (49%)

Query:   205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANK---GT-----LRDLTKGARNICF 256
             + C  CG S+  TP  R GP GP++LCNACG+    K   GT     L+  + G  N  F
Sbjct:    36 KTCADCGTSK--TPLWRGGPVGPKSLCNACGIRNRKKRRGGTEDNKKLKKSSSGGGNRKF 93

Query:   257 EQHELETSSDI---KPATTEAENSYANQDEQGS 286
              +   ++  D+   K +T E +     ++EQ +
Sbjct:    94 GESLKQSLMDLGIRKRSTVEKQRQKLGEEEQAA 126

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

DICTYBASE|DDB_G0285139 gtaL "GATA zinc finger domain-containing protein 12" [Dictyostelium discoideum (taxid:44689)]

 Score = 123 (48.4 bits), Expect = 0.00013, P = 0.00013
 Identities = 39/143 (27%), Positives = 66/143 (46%)

Query:   203 VSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMW---------ANKGTLRDLTKGARN 253
             +SR+C +C  S+  TP  RRGP G +TLCNACG+ +         +N  + R+ +     
Sbjct:   502 ISRVCVNCKTSD--TPEWRRGPQGAKTLCNACGIRYRLQQQQVPQSNLNSPRE-SYAVIP 558

Query:   254 ICFEQHELETS----SDIKPATTEAENSYANQDEQGSPHETKPAPLDPQNHSMRSNEQDL 309
              C E  + +TS    ++I  +TT    +   Q +Q  P +  P P+      +  ++Q L
Sbjct:   559 TCDENIKQQTSQNSTTNINSSTTTTTATIQQQQQQNIPQQF-PQPIQSPLKMLNIDQQIL 617

Query:   310 QEAMDELANAS-GSDFEIPSNFD 331
                 +   N     DF +  +F+
Sbjct:   618 NSYENNFKNQFIEKDFLLMDSFE 640

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

DICTYBASE|DDB_G0270756 gtaG "GATA zinc finger domain-containing protein 7" [Dictyostelium discoideum (taxid:44689)]

 Score = 124 (48.7 bits), Expect = 0.00018, P = 0.00018
 Identities = 36/127 (28%), Positives = 56/127 (44%)

Query:   207 CQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKG-----TLRDLTKGARNICFEQHEL 261
             C +CG   K TP  RRGP+GP TLCNACGL +A K       L  L   + +  + +  +
Sbjct:   842 CHNCGT--KNTPEWRRGPSGPATLCNACGLAYAKKQREEETNLHKLLLHSNSYSYHRGNM 899

Query:   262 ETSSDIKPATTEAENSYANQDEQGSPHETKPAPLDPQNHSMRSNEQDLQEAMDELANASG 321
                S + P+     N+ AN     +P+          + S  S+      +    ++ S 
Sbjct:   900 -LESYVTPSLLPLFNTAANVPYLNTPNNAS------SSSSSSSSSSSSSSSSSSTSSYSS 952

Query:   322 SDFEIPS 328
             S + IP+
Sbjct:   953 SSYNIPN 959

GO:0030587 "sorocarp development" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

DICTYBASE|DDB_G0295707 gtaP "GATA zinc finger domain-containing protein 16" [Dictyostelium discoideum (taxid:44689)]

 Score = 121 (47.7 bits), Expect = 0.00025, P = 0.00025
 Identities = 37/135 (27%), Positives = 57/135 (42%)

Query:   207 CQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHELETSSD 266
             C  CG++   TP  RRGP G +TLCNACGL WA K    +  K    +      +  +  
Sbjct:   479 CHTCGVTN--TPEWRRGPNGAKTLCNACGLAWA-KSVKSEKQK---ELLANSTGVNITEP 532

Query:   267 IKPATTEAENSYANQDEQGSPHETKPAPLDP-QNHSMRSNEQDLQEAMDELANASGSDFE 325
              K    + E+S  N +   S    K    D   N++  +N+ D         N+S S   
Sbjct:   533 KKAQKRKKESSDNNNNNNNSSDSNKVLKSDDGSNNTNLTNDDD--NGYPSSPNSSNSTSP 590

Query:   326 IPSNFDEQVDVDDSN 340
                N +   + +++N
Sbjct:   591 SSHNINNNNNNNNNN 605

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

TAIR|locus:2139594 GATA3 "GATA transcription factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 114 (45.2 bits), Expect = 0.00032, P = 0.00032
 Identities = 32/91 (35%), Positives = 43/91 (47%)

Query:   205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHELETS 264
             R C HCG +   TP  R GP GP+TLCNACG+ + + G L    + A +  F     E  
Sbjct:   180 RRCSHCGTNN--TPQWRTGPVGPKTLCNACGVRFKS-GRLCPEYRPADSPTFSN---EIH 233

Query:   265 SDIKPATTEAENSYANQDEQGSPHETKPAPL 295
             S++     E   S    +E G    TK  P+
Sbjct:   234 SNLHRKVLELRKSKELGEETGEA-STKSDPV 263

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0007623 "circadian rhythm" evidence=IEP

TAIR|locus:504955441 AT4G16141 [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 0.00048, P = 0.00048
 Identities = 34/115 (29%), Positives = 50/115 (43%)

Query:   205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANK-----GTLRD----LTKGARNIC 255
             + C  CG S   TP  R GPAGP++LCNACG+    K     G  +D     +K   N+ 
Sbjct:    37 KTCVDCGTSR--TPLWRGGPAGPKSLCNACGIKSRKKRQAALGIRQDDIKIKSKSNNNLG 94

Query:   256 FEQHELETSSDIKPATTEAENSYAN--QDEQGSPHETK-PAPLDPQNHSMRSNEQ 307
              E   ++T    +P   +         +  +G P   K     DP+N S  +N +
Sbjct:    95 LESRNVKTGKG-EPVNVKIAKCEPGIVKIAKGEPGNVKNKIKRDPENSSSSNNNK 148

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	348
pfam06203	45	pfam06203, CCT, CCT motif	8e-17
cd00202	54	cd00202, ZnF_GATA, Zinc finger DNA binding domain;	8e-14
pfam00320	36	pfam00320, GATA, GATA zinc finger	5e-12
smart00401	52	smart00401, ZnF_GATA, zinc finger binding to DNA c	2e-11
pfam06200	36	pfam06200, tify, tify domain	3e-05
smart00979	36	smart00979, TIFY, This short possible domain is fo	2e-04

>gnl|CDD|203407 pfam06203, CCT, CCT motif

 Score = 73.0 bits (180), Expect = 8e-17
 Identities = 22/44 (50%), Positives = 30/44 (68%)

Query: 138 RIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQFTSSK 181
           R A+L+R++EKRK R F+KKIRY+ RK VA+   R  G+F    
Sbjct: 1   REAALLRYKEKRKTRKFDKKIRYASRKAVAESRPRVKGRFVKQS 44

This short motif is found in a number of plant proteins. It is rich in basic amino acids and has been called a CCT motif after Co, Col and Toc1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif. Toc1 mutants have been identified in this region. Length = 45

>gnl|CDD|238123 cd00202, ZnF_GATA, Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

 Score = 64.7 bits (158), Expect = 8e-14
 Identities = 23/45 (51%), Positives = 28/45 (62%), Gaps = 2/45 (4%)

Query: 206 ICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKG 250
            C +CG +   TP  RRGP+G  TLCNACGL W   G +R L+K 
Sbjct: 1   ACSNCGTTT--TPLWRRGPSGGSTLCNACGLYWKKHGVMRPLSKR 43

Length = 54

>gnl|CDD|109380 pfam00320, GATA, GATA zinc finger

 Score = 59.2 bits (144), Expect = 5e-12
 Identities = 20/38 (52%), Positives = 24/38 (63%), Gaps = 2/38 (5%)

Query: 207 CQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL 244
           C +CG ++  TP  RRGP G RTLCNACGL +   G  
Sbjct: 1   CSNCGTTK--TPLWRRGPDGNRTLCNACGLYYRKHGLK 36

This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. Length = 36

>gnl|CDD|214648 smart00401, ZnF_GATA, zinc finger binding to DNA consensus sequence [AT]GATA[AG]

 Score = 58.2 bits (141), Expect = 2e-11
 Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 2/41 (4%)

Query: 205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLR 245
           R C +CG +E  TP  RRGP+G +TLCNACGL +   G L+
Sbjct: 4   RSCSNCGTTE--TPLWRRGPSGNKTLCNACGLYYKKHGGLK 42

Length = 52

>gnl|CDD|203405 pfam06200, tify, tify domain

 Score = 40.2 bits (95), Expect = 3e-05
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 74  TSELTVAYEGEVYVFPAVTPHKVQALLLLLG 104
           +++LT+ Y G+V VF  V P K Q ++ L  
Sbjct: 5   SAQLTIFYGGQVCVFDDVPPEKAQEIMRLAS 35

This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs. Although previously known as the Zim domain this is now called the tify domain after its most conserved amino acids. TIFY proteins can be further classified into two groups depending on the presence (group I) or absence (group II) of a C2C2-GATA domain. Functional annotation of these proteins is still poor, but several screens revealed a link between TIFY proteins of group II and jasmonic acid-related stress response. Length = 36

>gnl|CDD|198047 smart00979, TIFY, This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs

 Score = 37.6 bits (88), Expect = 2e-04
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 74  TSELTVAYEGEVYVFPAVTPHKVQALLLLLGE 105
           + +LT+ Y G V VF  V P K Q ++ L G 
Sbjct: 5   SQQLTIFYGGSVCVFDDVPPEKAQEIMSLAGN 36

Although previously known as the Zim domain this is now called the tify domain after its most conserved amino acids. TIFY proteins can be further classified into two groups depending on the presence (group I) or absence (group II) of a C2C2-GATA domain. Functional annotation of these proteins is still poor, but several screens revealed a link between TIFY proteins of group II and jasmonic acid-related stress response. Length = 36

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	348
PF06200	36	tify: tify domain; InterPro: IPR010399 The tify do	99.65
cd00202	54	ZnF_GATA Zinc finger DNA binding domain; binds spe	99.58
smart00401	52	ZnF_GATA zinc finger binding to DNA consensus sequ	99.5
PF00320	36	GATA: GATA zinc finger; InterPro: IPR000679 Zinc f	99.48
PF06203	45	CCT: CCT motif; InterPro: IPR010402 The CCT (CONST	99.14
KOG1601	340	consensus GATA-4/5/6 transcription factors [Transc	98.61
COG5641	498	GAT1 GATA Zn-finger-containing transcription facto	98.29
PF09425	27	CCT_2: Divergent CCT motif; InterPro: IPR018467 Th	98.14
COG5641	498	GAT1 GATA Zn-finger-containing transcription facto	92.21
KOG3554	693	consensus Histone deacetylase complex, MTA1 compon	82.19

>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants)

Probab=99.65  E-value=1.2e-16  Score=110.46  Aligned_cols=36  Identities=42%  Similarity=0.683  Sum_probs=33.2

Q ss_pred             CCCCCccceEEeccEEEEeCCCChhHHHHHHHHhcC
Q 018981           70 TSTRTSELTVAYEGEVYVFPAVTPHKVQALLLLLGE  105 (348)
Q Consensus        70 ~~~~t~QLTIfY~G~V~VFDdVp~eKaqaImlLa~~  105 (348)
                      +.+.++||||||+|+|+|||+||+|||++||+||+.
T Consensus         1 ~~~~~~qLTIfY~G~V~Vfd~v~~~Ka~~im~lA~r   36 (36)
T PF06200_consen    1 PSPETAQLTIFYGGQVCVFDDVPPDKAQEIMLLASR   36 (36)
T ss_pred             CCCCCCcEEEEECCEEEEeCCCCHHHHHHHHHHhcC
Confidence            356789999999999999999999999999999973

It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].

>cd00202 ZnF_GATA Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

Probab=99.58  E-value=1.2e-15  Score=113.99  Aligned_cols=44  Identities=52%  Similarity=1.118  Sum_probs=40.7

Q ss_pred             ccccccccccCCCccccCCCCCchhchHhhHHHHhcCCCCCCccCc
Q 018981          206 ICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGA  251 (348)
Q Consensus       206 ~C~~Cg~~~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~r~~~k~~  251 (348)
                      .|+||++  +.||+||+||.|..+|||||||||++++..||..+..
T Consensus         1 ~C~~C~~--~~Tp~WR~g~~~~~~LCNaCgl~~~k~~~~rp~~~~~   44 (54)
T cd00202           1 ACSNCGT--TTTPLWRRGPSGGSTLCNACGLYWKKHGVMRPLSKRK   44 (54)
T ss_pred             CCCCCCC--CCCcccccCCCCcchHHHHHHHHHHhcCCCCCcccCc
Confidence            5999999  5799999999998999999999999999999988764

>smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG]

Probab=99.50  E-value=9.8e-15  Score=108.12  Aligned_cols=45  Identities=51%  Similarity=1.029  Sum_probs=40.5

Q ss_pred             ccccccccccccCCCccccCCCCCchhchHhhHHHHhcCCC-CCCccC
Q 018981          204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL-RDLTKG  250 (348)
Q Consensus       204 ~~~C~~Cg~~~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~-r~~~k~  250 (348)
                      ...|+||++  +.||+||+||.|..+|||||||+|++++.+ |+..+.
T Consensus         3 ~~~C~~C~~--~~T~~WR~g~~g~~~LCnaCgl~~~k~~~~~rp~~~~   48 (52)
T smart00401        3 GRSCSNCGT--TETPLWRRGPSGNKTLCNACGLYYKKHGGLKRPLSLK   48 (52)
T ss_pred             CCCcCCCCC--CCCCccccCCCCCCcEeecccHHHHHcCCCCCccccc
Confidence            579999999  579999999999889999999999999988 776654

>PF00320 GATA: GATA zinc finger; InterPro: IPR000679 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.48  E-value=9.3e-15  Score=100.66  Aligned_cols=36  Identities=56%  Similarity=1.186  Sum_probs=28.2

Q ss_pred             cccccccccCCCccccCCCCCchhchHhhHHHHhcCCC
Q 018981          207 CQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL  244 (348)
Q Consensus       207 C~~Cg~~~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~  244 (348)
                      |+||++  +.||+||+||.|..+||||||++|++++++
T Consensus         1 C~~C~t--t~t~~WR~~~~g~~~LCn~Cg~~~kk~~~~   36 (36)
T PF00320_consen    1 CSNCGT--TETPQWRRGPNGNRTLCNACGLYYKKYGKM   36 (36)
T ss_dssp             -TTT----ST-SSEEEETTSEE-EEHHHHHHHHHHSS-
T ss_pred             CcCCcC--CCCchhhcCCCCCCHHHHHHHHHHHHhCCC
Confidence            899999  469999999999889999999999999864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents GATA-type zinc fingers (Znf). A number of transcription factors (including erythroid-specific transcription factor and nitrogen regulatory proteins), specifically bind the DNA sequence (A/T)GATA(A/G) [] in the regulatory regions of genes. They are consequently termed GATA-binding transcription factors. The interactions occur via highly-conserved Znf domains in which the zinc ion is coordinated by 4 cysteine residues [, ]. NMR studies have shown the core of the Znf to comprise 2 irregular anti-parallel beta-sheets and an alpha-helix, followed by a long loop to the C-terminal end of the finger. The N-terminal part, which includes the helix, is similar in structure, but not sequence, to the N-terminal zinc module of the glucocorticoid receptor DNA-binding domain. The helix and the loop connecting the 2 beta-sheets interact with the major groove of the DNA, while the C-terminal tail wraps around into the minor groove. It is this tail that is the essential determinant of specific binding. Interactions between the Znf and DNA are mainly hydrophobic, explaining the preponderance of thymines in the binding site; a large number of interactions with the phosphate backbone have also been observed []. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 3GAT_A 2GAT_A 1GAU_A 1GAT_A 1Y0J_A 1GNF_A 2L6Z_A 2L6Y_A 3DFV_D 3DFX_B ....

>PF06203 CCT: CCT motif; InterPro: IPR010402 The CCT (CONSTANS, CO-like, and TOC1) domain is a highly conserved basic module of ~43 amino acids, which is found near the C terminus of plant proteins often involved in light signal transduction

Probab=99.14  E-value=1.8e-11  Score=88.60  Aligned_cols=44  Identities=52%  Similarity=0.819  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHhhhhcccccceeeccchhhHHHHHhhcCcccccc
Q 018981          138 RIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQFTSSK  181 (348)
Q Consensus       138 R~aSL~Rf~eKRk~R~~~k~i~Y~~RK~~A~rrpR~KGqFas~k  181 (348)
                      |.++|+||++||+.|+|.|+|+|.+||.+|+.++|.+|+|++..
T Consensus         1 R~~~l~Ry~~Kr~~R~f~kkirY~~Rk~~A~~R~RvkGRFvk~~   44 (45)
T PF06203_consen    1 REEKLQRYREKRKRRNFEKKIRYESRKAVADKRPRVKGRFVKKS   44 (45)
T ss_pred             CHHHHHHHHHHHHhhcccccCCcchHHHHHhhCCccCCcccCCC
Confidence            67899999999999999999999999999999999999998854

The CCT domain is found in association with other domains, such as the B-box zinc finger, the GATA-type zinc finger, the ZIM motif or the response regulatory domain. The CCT domain contains a putative nuclear localisation signal within the second half of the CCT motif and has been shown to be involved in nuclear localization and probably also has a role in protein-protein interaction [].; GO: 0005515 protein binding

>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]

Probab=98.61  E-value=2e-08  Score=90.28  Aligned_cols=46  Identities=48%  Similarity=0.988  Sum_probs=39.4

Q ss_pred             ccccccccccccCCCccccCCCCCchhchHhhHHHHhcCCCCCCccCc
Q 018981          204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGA  251 (348)
Q Consensus       204 ~~~C~~Cg~~~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~r~~~k~~  251 (348)
                      ...|.+|++  +.||+||++|.|...||||||++|++++..|.+....
T Consensus       199 ~~~c~~~~~--~~t~~~r~~~~g~~~~cnacgl~~k~~~~~r~~~~~~  244 (340)
T KOG1601|consen  199 LRQCSNCGT--TKTPLWRRGPEGPKSLCNACGLRYKKGGVRRPLPEKR  244 (340)
T ss_pred             CcccCCCCC--CCCcceecCCCCCccccccchhhhhhcCccccccccC
Confidence            479999999  5799999999999999999999999997555555443

>COG5641 GAT1 GATA Zn-finger-containing transcription factor [Transcription]

Probab=98.29  E-value=3.2e-07  Score=94.98  Aligned_cols=59  Identities=27%  Similarity=0.528  Sum_probs=47.0

Q ss_pred             CCCcccccccccccccccCCCccccCCCC----CchhchHhhHHHHhcCCCC-CCccCcccccccc
Q 018981          198 APPESVSRICQHCGISEKLTPAMRRGPAG----PRTLCNACGLMWANKGTLR-DLTKGARNICFEQ  258 (348)
Q Consensus       198 ~~~~~~~~~C~~Cg~~~~~TP~WRrGP~G----~~tLCNACGl~~~~~~~~r-~~~k~~~~~~~~q  258 (348)
                      ...+.+...|.||.+  +.||+|||+..+    .-.|||||||+|+.||++| |++.....++.+.
T Consensus       152 ~~~s~~~~vc~Nc~t--~stPlwrR~~~~~s~~~n~lcnaCgl~~klhg~~r~P~t~ks~~~ks~~  215 (498)
T COG5641         152 SDNSNQPHVCSNCKT--TSTPLWRRASSESSLPGNNLCNACGLYLKLHGSPRAPISLKSDSIKSRS  215 (498)
T ss_pred             cccccccchhccccc--cCCccccccccccccCCccccccccccccccCCcCCCcccccccccccc
Confidence            344445569999999  579999999993    3899999999999999999 8776655554443

>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1

Probab=98.14  E-value=1e-06  Score=57.54  Aligned_cols=26  Identities=50%  Similarity=0.563  Sum_probs=10.0

Q ss_pred             HHHHHHHHHHHHhhhhcccccceeecc
Q 018981          136 SQRIASLVRFREKRKERSFEKKIRYSC  162 (348)
Q Consensus       136 ~~R~aSL~Rf~eKRk~R~~~k~i~Y~~  162 (348)
                      .+|++||+||+||||+|..+ +.+|..
T Consensus         2 ~aRK~SLqRFLeKRK~R~~~-~~PY~~   27 (27)
T PF09425_consen    2 IARKASLQRFLEKRKDRLAA-KSPYQA   27 (27)
T ss_dssp             ----HHHHHHHHHH-------------
T ss_pred             chHHHHHHHHHHHHHHhhcc-CCCCCC
Confidence            47999999999999999988 489863

The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.

>COG5641 GAT1 GATA Zn-finger-containing transcription factor [Transcription]

Probab=92.21  E-value=0.073  Score=55.94  Aligned_cols=51  Identities=24%  Similarity=0.225  Sum_probs=43.1

Q ss_pred             ccccccccccccCCCccccCCCCCchhchHhhHHHHhcCCCCCCccCccccc
Q 018981          204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNIC  255 (348)
Q Consensus       204 ~~~C~~Cg~~~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~r~~~k~~~~~~  255 (348)
                      ...|.+|++. +.||.||+...-...+|||||++.+..+..+++.++..-..
T Consensus       297 ~~~~s~~~~~-~~tp~~~r~~~~~s~~~n~~~~~~~~~~~~~p~~pk~d~n~  347 (498)
T COG5641         297 DKKRSTLTTS-TATPLWRRTSDKSSFSCNASGSALKPPGSKRPLLPKPDPNS  347 (498)
T ss_pred             hcCccccccc-ccCcccccccccccccccccccccCCcccccccCCCCChhh
Confidence            6789999976 57999999988879999999999999999999887544333

>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]

Probab=82.19  E-value=5.2  Score=42.30  Aligned_cols=45  Identities=22%  Similarity=0.451  Sum_probs=33.8

Q ss_pred             CCCcccccccccccccccCCCccc--cCCCCCchhchHhhHHHHhcCCC
Q 018981          198 APPESVSRICQHCGISEKLTPAMR--RGPAGPRTLCNACGLMWANKGTL  244 (348)
Q Consensus       198 ~~~~~~~~~C~~Cg~~~~~TP~WR--rGP~G~~tLCNACGl~~~~~~~~  244 (348)
                      ..+....+.|-+|++  |..-+|=  -+|.-...||-.|=+||++-|-+
T Consensus       380 t~~~~~g~~CEsC~t--tqs~qWYsWGppnmqcrLCasCWiyWKKygGL  426 (693)
T KOG3554|consen  380 TFQNQDGRACESCYT--TQSLQWYSWGPPNMQCRLCASCWIYWKKYGGL  426 (693)
T ss_pred             cccCCCCCccccccc--ccccceeccCCCCccchhhHHHHHHHHHhcCc
Confidence            344344789999999  4676774  45666678999999999998754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	348
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	5e-11
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	2e-10
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	3e-07
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	4e-07
3dfx_A	63	Trans-acting T-cell-specific transcription factor	5e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans} Length = 71

 Score = 56.8 bits (137), Expect = 5e-11
 Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 201 ESVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLT 248
              S  C +C ++E  T   R   +     CNAC +        R +T
Sbjct: 5   NKKSFQCSNCSVTE--TIRWRNIRSKEGIQCNACFIYQRKYNKTRPVT 50

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A Length = 46

 Score = 54.7 bits (132), Expect = 2e-10
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 202 SVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTK 249
           S +R C +CG +   TP  RR   G   LCNACGL     G  R L +
Sbjct: 2   SEARECVNCGATA--TPLWRRDRTG-HYLCNACGLYHKMNGQNRPLIR 46

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I* Length = 43

 Score = 45.5 bits (108), Expect = 3e-07
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLT 248
             C +C      TP  RR P G + LCNACGL     G +R L+
Sbjct: 2   TTCTNCFTQT--TPLWRRNPEG-QPLCNACGLFLKLHGVVRPLS 42

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A* Length = 66

 Score = 45.8 bits (108), Expect = 4e-07
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 201 ESVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNI 254
           ++    C +C      TP  RR P G + LCNACGL     G +R L+     I
Sbjct: 6   QNGPTTCTNCFTQT--TPLWRRNPEG-QPLCNACGLFLKLHGVVRPLSLKTDVI 56

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* Length = 63

 Score = 45.4 bits (107), Expect = 5e-07
 Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 3/57 (5%)

Query: 198 APPESVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNI 254
           +        C +C  +   T   RR   G   +CNACGL +      R LT     I
Sbjct: 1   SAARRAGTSCANCQTTT--TTLWRRNANG-DPVCNACGLYYKLHNINRPLTMKKEGI 54

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 5e-06
 Identities = 58/372 (15%), Positives = 115/372 (30%), Gaps = 102/372 (27%)

Query: 2   FAMNP------QP-LQARPYIDTEEHDVAQTPIPIQNGSKQGDRYD--EPEEVED-EAGA 51
           F M+P      QP +  R YI  E+ D       + N ++   +Y+    +         
Sbjct: 93  FLMSPIKTEQRQPSMMTRMYI--EQRD------RLYNDNQVFAKYNVSRLQPYLKLRQAL 144

Query: 52  SSVNRKSN-----DRG-GSSVQSSTSTRTSELTVAYEGEVYVFPAVTPHKVQALLLLLGE 105
             +    N       G G +  +     + ++    + +++              L L  
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF-------------WLNLKN 191

Query: 106 CDIPSTVPSSAFAQPQN----IMSGGSA--SNGSKLSQRIASL---VR--FREKRKERSF 154
           C+ P TV        Q     I    ++   + S +  RI S+   +R   + K  E   
Sbjct: 192 CNSPETV----LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247

Query: 155 --------EKKIRY---SCRKEVAQRMQRKNGQFTSSKATFNIASANSNPSNGSAPPESV 203
                    K       SC+  +  R  ++   F S+  T +I+    + S    P E  
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTTR-FKQVTDFLSAATTTHISL--DHHSMTLTPDEVK 304

Query: 204 SRICQHCGIS-EKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHELE 262
           S + ++     + L   +      PR       ++  +   +RD    A    ++    +
Sbjct: 305 SLLLKYLDCRPQDLPREVLTT--NPR----RLSIIAES---IRDGL--ATWDNWKHVNCD 353

Query: 263 TSSDIKPATTEAENSYANQDEQGSPHETKPA-------PLD----PQNHSM---RSNEQD 308
             + I       E+S    +    P E +         P          S+      + D
Sbjct: 354 KLTTI------IESSLNVLE----PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403

Query: 309 LQEAMDELANAS 320
           +   +++L   S
Sbjct: 404 VMVVVNKLHKYS 415

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	348
3dfx_A	63	Trans-acting T-cell-specific transcription factor	99.72
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	99.69
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	99.68
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	99.68
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	99.56
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.53
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.33
3ogk_Q	22	JAZ1 incomplete degron peptide; leucine rich repea	97.86
3ogl_Q	21	JAZ1 incomplete degron peptide; leucine-rich repea	97.55

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*

Probab=99.72  E-value=3.1e-18  Score=130.64  Aligned_cols=56  Identities=29%  Similarity=0.530  Sum_probs=48.1

Q ss_pred             cccccccccccccCCCccccCCCCCchhchHhhHHHHhcCCCCCCccCccccccccccc
Q 018981          203 VSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHEL  261 (348)
Q Consensus       203 ~~~~C~~Cg~~~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~r~~~k~~~~~~~~q~~~  261 (348)
                      ....|+||++  +.||+||+||+|+ +|||||||+|++++++||++.....|..+++.+
T Consensus         6 ~~~~C~~C~t--t~Tp~WR~gp~G~-~LCNACGl~~~~~~~~RP~~~~~~~i~~R~Rk~   61 (63)
T 3dfx_A            6 AGTSCANCQT--TTTTLWRRNANGD-PVCNACGLYYKLHNINRPLTMKKEGIQTRNRKM   61 (63)
T ss_dssp             TTCCCTTTCC--SCCSSCCCCTTSC-CCCHHHHHHHHHHSSCCCGGGCCSSCCCCC---
T ss_pred             CCCcCCCcCC--CCCCccCCCCCCC-chhhHHHHHHHHcCCCCCcCcCCCccccccCCC
Confidence            3679999999  5799999999996 999999999999999999998887777776654

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A

Probab=99.69  E-value=8.1e-18  Score=121.01  Aligned_cols=43  Identities=44%  Similarity=0.821  Sum_probs=40.0

Q ss_pred             ccccccccccccCCCccccCCCCCchhchHhhHHHHhcCCCCCCcc
Q 018981          204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTK  249 (348)
Q Consensus       204 ~~~C~~Cg~~~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~r~~~k  249 (348)
                      ...|+||++  +.||+||+||+|+ +|||||||||++++++||++|
T Consensus         4 ~~~C~~C~t--t~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~~   46 (46)
T 1gnf_A            4 ARECVNCGA--TATPLWRRDRTGH-YLCNACGLYHKMNGQNRPLIR   46 (46)
T ss_dssp             SCCCTTTCC--CCCSSCBCCTTCC-CBCSHHHHHHHHTCSCCCCCC
T ss_pred             CCCCCCcCC--CCCCcCccCCCCC-ccchHHHHHHHHcCCCCCCCC
Confidence            578999999  5799999999996 999999999999999999875

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*

Probab=99.68  E-value=1.5e-17  Score=127.85  Aligned_cols=55  Identities=35%  Similarity=0.625  Sum_probs=48.5

Q ss_pred             ccccccccccccCCCccccCCCCCchhchHhhHHHHhcCCCCCCccCccccccccccc
Q 018981          204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHEL  261 (348)
Q Consensus       204 ~~~C~~Cg~~~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~r~~~k~~~~~~~~q~~~  261 (348)
                      ...|+||++  +.||+||+||+|. +|||||||||++++++||+++....|..+.+..
T Consensus         9 ~~~C~~C~t--~~Tp~WR~gp~G~-~LCNaCGl~~~~~~~~RP~~~k~~~ik~R~R~~   63 (66)
T 4gat_A            9 PTTCTNCFT--QTTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLSLKTDVIKKRNRNS   63 (66)
T ss_dssp             SCCCTTTCC--CCCSSCEEETTTE-EECHHHHHHHHHHCSCCCGGGCCSCCCCCCCSC
T ss_pred             CCCCCCCCC--CCCCcCCcCCCCC-CccHHHHHHHHHcCCCCchhhccccccccccCC
Confidence            579999999  5799999999996 999999999999999999999877776665543

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*

Probab=99.68  E-value=1.2e-17  Score=118.52  Aligned_cols=41  Identities=44%  Similarity=0.889  Sum_probs=38.3

Q ss_pred             cccccccccccCCCccccCCCCCchhchHhhHHHHhcCCCCCCc
Q 018981          205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLT  248 (348)
Q Consensus       205 ~~C~~Cg~~~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~r~~~  248 (348)
                      ..|++|++  +.||+||+||+|+ +|||||||+|++++++||++
T Consensus         2 ~~C~~C~t--t~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~   42 (43)
T 2vut_I            2 TTCTNCFT--QTTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLS   42 (43)
T ss_dssp             CCCSSSCC--CCCSCCEECTTSC-EECHHHHHHHHHHSSCCCCC
T ss_pred             CcCCccCC--CCCCccccCCCCC-cccHHHHHHHHHhCCCCCCC
Confidence            57999999  5799999999996 99999999999999999986

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}

Probab=99.56  E-value=3.8e-16  Score=121.64  Aligned_cols=48  Identities=23%  Similarity=0.300  Sum_probs=40.3

Q ss_pred             cccccccccccccCCCccccCCCCCchhchHhhHHHHhcCCCCCCccCcc
Q 018981          203 VSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGAR  252 (348)
Q Consensus       203 ~~~~C~~Cg~~~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~r~~~k~~~  252 (348)
                      ....|+||++  +.||+||+||.+..+|||||||||++++++||+.....
T Consensus         7 ~~~~C~nC~t--t~Tp~WRrg~~~~g~LCNACGl~~~~~~~~RP~~~~~~   54 (71)
T 2kae_A            7 KSFQCSNCSV--TETIRWRNIRSKEGIQCNACFIYQRKYNKTRPVTAVNK   54 (71)
T ss_dssp             -CCCCSSSCC--SCCSSCCCCSSSSCCCSSHHHHHHHHHHSCCCTHHHHH
T ss_pred             CCCcCCccCC--CCCCccccCCCCCCccchHHHHHHHHhCCCCCcccchh
Confidence            3689999999  47999999544444999999999999999999887644

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.53  E-value=3.8e-15  Score=125.55  Aligned_cols=55  Identities=29%  Similarity=0.541  Sum_probs=48.1

Q ss_pred             ccccccccccccCCCccccCCCCCchhchHhhHHHHhcCCCCCCccCccccccccccc
Q 018981          204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHEL  261 (348)
Q Consensus       204 ~~~C~~Cg~~~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~r~~~k~~~~~~~~q~~~  261 (348)
                      ...|+||++  +.||+||+||+| .+|||||||||++|++.||++.....|..+.+++
T Consensus        59 ~~~C~~C~t--~~tp~WRr~~~g-~~lCNaCgl~~~~~~~~rp~~~~~~~i~~r~r~~  113 (115)
T 4hc9_A           59 GTSCANCQT--TTTTLWRRNANG-DPVCNACGLYYKLHNINRPLTMKKEGIQTRNRKM  113 (115)
T ss_dssp             TCCCTTTCC--SCCSSCEECTTS-CEECHHHHHHHHHHSSCCCGGGCCSSCCCCC---
T ss_pred             cccCCCcCC--CCcceeEECCCC-CCcchHHHHHHHHhCCCCCccccccchhhccccc
Confidence            579999999  469999999999 8999999999999999999999888888776654

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.33  E-value=9.3e-13  Score=110.95  Aligned_cols=45  Identities=44%  Similarity=0.769  Sum_probs=40.5

Q ss_pred             ccccccccccccCCCccccCCCCCchhchHhhHHHHhcCCCCCCccCc
Q 018981          204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGA  251 (348)
Q Consensus       204 ~~~C~~Cg~~~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~r~~~k~~  251 (348)
                      .+.|.||++  +.||+||+||+| .+|||||||||+.++..||+.+.+
T Consensus         5 ~~~C~~Cg~--~~Tp~WRr~~~g-~~lCnaCgl~~Kl~G~nRP~~KpK   49 (115)
T 4hc9_A            5 GRECVNCGA--TSTPLWRRDGTG-HYLCNACGLYHKMNGQNRPLIKPK   49 (115)
T ss_dssp             -CCCTTTCC--SCCSSCEECTTS-CEECHHHHHHHHHHSSCCCCSSCC
T ss_pred             CCCCCCCCC--ccCCcceECCCC-CCcCcchhhhhhhccccccccccc
Confidence            679999999  579999999999 799999999999999999987654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	348
d1y0ja1	39	g.39.1.1 (A:200-238) Erythroid transcription facto	8e-11
d2vuti1	42	g.39.1.1 (I:671-712) Erythroid transcription facto	3e-10
d3gata_	66	g.39.1.1 (A:) Erythroid transcription factor GATA-	2e-08

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 39

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.3 bits (131), Expect = 8e-11
 Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 3/39 (7%)

Query: 205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGT 243
           R C +CG +   TP  RR   G   LCNACGL     G 
Sbjct: 3   RECVNCGATA--TPLWRRDRTG-HYLCNACGLYHKMNGQ 38

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]} Length = 42

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

 Score = 52.5 bits (126), Expect = 3e-10
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 3/42 (7%)

Query: 207 CQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLT 248
           C +C      TP  RR P G + LCNACGL     G +R L+
Sbjct: 3   CTNCFTQT--TPLWRRNPEG-QPLCNACGLFLKLHGVVRPLS 41

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 66

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 48.4 bits (115), Expect = 2e-08
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNI 254
            +C +C  S   T   RR P G   +CNACGL +      R LT     I
Sbjct: 5   TVCSNCQTST--TTLWRRSPMG-DPVCNACGLYYKLHQVNRPLTMRKDGI 51

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	348
d2vuti1	42	Erythroid transcription factor GATA-1 {Emericella	99.73
d3gata_	66	Erythroid transcription factor GATA-1 {Chicken (Ga	99.69
d1y0ja1	39	Erythroid transcription factor GATA-1 {Mouse (Mus	99.67

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

Probab=99.73  E-value=4.2e-19  Score=123.40  Aligned_cols=40  Identities=45%  Similarity=0.927  Sum_probs=37.8

Q ss_pred             ccccccccccCCCccccCCCCCchhchHhhHHHHhcCCCCCCc
Q 018981          206 ICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLT  248 (348)
Q Consensus       206 ~C~~Cg~~~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~r~~~  248 (348)
                      .|+||++  ++||+||+||+| ++|||||||||++++++||++
T Consensus         2 ~C~nC~t--t~Tp~WRr~~~G-~~lCNACGl~~k~~g~~RP~s   41 (42)
T d2vuti1           2 TCTNCFT--QTTPLWRRNPEG-QPLCNACGLFLKLHGVVRPLS   41 (42)
T ss_dssp             CCSSSCC--CCCSCCEECTTS-CEECHHHHHHHHHHSSCCCCC
T ss_pred             cCCCCCC--CCCccceeCCCC-CCchhhhhHHHHHcCCCCCCC
Confidence            6999999  579999999999 799999999999999999986

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.69  E-value=5.6e-18  Score=128.42  Aligned_cols=56  Identities=30%  Similarity=0.591  Sum_probs=47.6

Q ss_pred             ccccccccccccCCCccccCCCCCchhchHhhHHHHhcCCCCCCccCcccccccccccC
Q 018981          204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHELE  262 (348)
Q Consensus       204 ~~~C~~Cg~~~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~r~~~k~~~~~~~~q~~~~  262 (348)
                      ...|+||++  +.||+||+||+| .+|||||||||+++++.||+......|..+.+.+.
T Consensus         4 g~~C~nCgt--~~Tp~WRr~~~G-~~lCNACGl~~~~~~~~RP~~~~~~~i~~r~r~~~   59 (66)
T d3gata_           4 GTVCSNCQT--STTTLWRRSPMG-DPVCNACGLYYKLHQVNRPLTMRKDGIQTRNRKVS   59 (66)
T ss_dssp             TCCCTTTCC--CCCSSEEECTTS-CEEEHHHHHHHHHHCSCCCGGGCCSSCCCCSCCCC
T ss_pred             CCCCCCCCC--CCCcccccCCCC-CcccchhHHHHHHhCCcCCccccccccccccCCCC
Confidence            568999999  579999999999 79999999999999999999877666665554443

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=5.4e-18  Score=116.03  Aligned_cols=37  Identities=46%  Similarity=0.905  Sum_probs=34.1

Q ss_pred             ccccccccccccCCCccccCCCCCchhchHhhHHHHhcCC
Q 018981          204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGT  243 (348)
Q Consensus       204 ~~~C~~Cg~~~~~TP~WRrGP~G~~tLCNACGl~~~~~~~  243 (348)
                      .+.|+||++  +.||+||+||+| ++|||||||||++||+
T Consensus         2 ~r~C~~Cgt--t~Tp~WR~gp~G-~~LCNACGl~~r~~G~   38 (39)
T d1y0ja1           2 ARECVNCGA--TATPLWRRDRTG-HYLCNACGLYHKMNGQ   38 (39)
T ss_dssp             CCCCSSSCC--CCCSCCEECTTS-CEECSSHHHHHHHSCC
T ss_pred             cCCCCCCCC--CCCcccccCCCC-CEeeHHhHHHHHHhCC
Confidence            478999999  579999999999 6999999999999986