Citrus Sinensis ID: 018990

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------35
Protein Sequence
MAKTSRQSQKNTTTNPNNNNTVTTKTKRTRKSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDNEEAAARAYDLAALKYWGHDTILNFPLSNYEEELVEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAQAYDRAAIEYRGLNAVTNFDLSKYIKWLRPNNNQNNPKPSNPQQNPNSDDTSPIPKLNQETSSGSETSAPPPRSGATAGGSGSASSALGLLLQSSKYKEMVEKTSTDCLSTSSEPGSSHRIFPDDIQTMFFDCQDSSSYTEGDDVLLGDLNPYIFPTFYSELDN
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccEEEEEEEccccccccccccccEEEEcccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHccccHHHHcccccccccccccccccccccccccccccccEEccccccEEEEccccccHHHHHHHHHHHHHHHccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccEEccEEEEccccEEEEEEEccccccccccccccEEEEccccHHHHHHHHHHHHHHHHcccccEEcccHHHHHHHHHHHHcccHHHHHHHHHHccccccccccEEccEEEcccccEEEEEEEEEccccEEEEcccccHHHHHHHHHHHHHHHccccEEEcccccHccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccHHHHHHcccccccccccccccccccccccccEEEEEcccccccccccccEEEcccHcccccccEccccc
Coil and Loop (DISEMBL)
maktsrqsqkntttnpnnnntvttktkrtrksvprdsppqrssiyrgvtrhrwtgryeahlwdkncwnesqnkkgrQVYLGAYDNEEAAARAYDLAALKYwghdtilnfplsnyEEELVEMEGQSKEEYIGSlrrkssgfsrgvskyrgvarhhhngrweARIGRVFGNKYLYLGTYATQEEAAQAYDRAAIEYRglnavtnfdlskyikwlrpnnnqnnpkpsnpqqnpnsddtspipklnqetssgsetsappprsgataggsgsaSSALGLLLQSSKYKEMVEKTStdclstssepgsshrifpddiqtmffdcqdsssytegddvllgdlnpyifptfyseldn
Flexible Loop (DISEMBL)
maktsrqsqkntttnpnnnntvttktkrtrksvprdsppqrssiyrgvtrhrWTGRYEAhlwdkncwnesqnkKGRQVYLGAYDNEEAAARAYDLAALKYWGHDTILNFPLSNYEEELVEMEGQSKeeyigslrrkssgfsrgvskyrgvarhhhngrwearigrVFGNKYLYLGTYATQEEAAQAYDRAAIEYRGLNAVTNFDLSKYIKWLRPNNNQnnpkpsnpqqnpnSDDTSPIPKLNQETSSGSETSAPPPRSGATAGGSGSASSALGLLLQSSKYKEMVEKTSTdclstssepgssHRIFPDDIQTMFFDCQDSSSYTEGDDVLLGDLNPYIFPTFYSELDN
Low Complexity Region (SEG)
MAKTSRqsqkntttnpnnnntvttktkrtrksvpRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDNEEaaaraydlaaLKYWGHDTILNFPLSNYEEELVEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAQAYDRAAIEYRGLNAVTNFDLSKYIKWLRpnnnqnnpkpsnpqqnpnsDDTSPIPKLNQETSSGSETSAPPPRsgataggsgsassalglllqssKYKEMVEKTSTDCLSTSSEPGSSHRIFPDDIQTMFFDCQDSSSYTEGDDVLLGDLNPYIFPTFYSELDN
Disordered region (IsUnstruct)
*******************************************IYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDNEEAAARAYDLAALKYWGHDTILNFPLSNYEEEL*************************VSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAQAYDRAAIEYRGLNAVTNFDLSKYIKWLR***********************************************************************************************DIQTMFFDCQDSSSYTEGDDVLLGDLNPYIFPTFY*****
Disordered Region (DISOPRED)
***********************************************VTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDNEEAAARAYDLAALKYWGHDTILNFPLSNYEEELVEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAQAYDRAAIEYRGLNAVTNFDLSKY******************************************************************************************************QTMFFDCQDSSSYTEGDDVLLGDLNPYIFPTFYSEL**
Disordered Region (DISEMBL)
**************NPNNNNTV********************SIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDNEEAAARAYDLAALKYWGHDTILNFPLSNYEEELVEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAQAYDRAAIEYRGLNAVTNFDLSKYIKWLRPNNNQNN****************PIPK*****************************SALGLLLQSSKYKEM*****************SHRIFPDDIQTMFFDCQDSSSYTEGDDVLLGDLNPYIFPTFYSELDN
Disordered Region (DISPRO)
*****************************************SSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDNEEAAARAYDLAALKYWGHDTILNFPLSNYEEELVEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAQAYDRAAIEYRGLNAVTNFDLSKYIKWLRPN*************************************************************QSSKYKEMVEKT************SSHRIFPDDIQTMFFDCQDSSSYTEGDDVLLGDLNPYIFPTFYSELDN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAKTSRQSQKNTTTNPNNNNTVTTKTKRTRKSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDNEEAAARAYDLAALKYWGHDTILNFPLSNYEEELVEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAQAYDRAAIEYRGLNAVTNFDLSKYIKWLRPNNNQNNPKPSNPQQNPNSDDTSPIPKLNQETSSGSETSAPPPRSGATAGGSGSASSALGLLLQSSKYKEMVEKTSTDCLSTSSEPGSSHRIFPDDIQTMFFDCQDSSSYTEGDDVLLGDLNPYIFPTFYSELDN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	348	2.2.26 [Sep-21-2011]
Q94AN4	345	AP2-like ethylene-respons	yes	no	0.945	0.953	0.606	2e-96
A0JPZ8	303	AP2-like ethylene-respons	no	no	0.839	0.963	0.549	3e-83
Q6X5Y6	430	Ethylene-responsive trans	no	no	0.543	0.439	0.747	3e-76
Q6PQQ3	558	AP2-like ethylene-respons	no	no	0.462	0.288	0.739	5e-74
Q8LSN2	579	AP2-like ethylene-respons	N/A	no	0.594	0.357	0.629	2e-72
Q5YGP7	568	AP2-like ethylene-respons	no	no	0.563	0.345	0.633	3e-72
Q6PQQ4	584	AP2-like ethylene-respons	no	no	0.528	0.315	0.682	4e-72
Q8L3U3	579	AP2-like ethylene-respons	N/A	no	0.471	0.283	0.716	8e-72
Q1PFE1	415	AP2-like ethylene-respons	no	no	0.520	0.436	0.690	1e-71
Q5YGP8	574	AP2-like ethylene-respons	no	no	0.566	0.343	0.613	1e-70

>sp|Q94AN4|AP2L1_ARATH AP2-like ethylene-responsive transcription factor At1g16060 OS=Arabidopsis thaliana GN=At1g16060 PE=2 SV=1

 Score =  353 bits (905), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 214/353 (60%), Positives = 249/353 (70%), Gaps = 24/353 (6%)

Query: 1   MAKTSRQSQKNTTTNPNNNN----TVTTKTKRTRKSVPRDSPPQRSSIYRGVTRHRWTGR 56
           M   +RQS+K +  N   ++    +V  K KR R+S PRD+PPQRSS++RGVTRHRWTGR
Sbjct: 11  MEDITRQSKKTSVENETGDDQSATSVVLKAKRKRRSQPRDAPPQRSSVHRGVTRHRWTGR 70

Query: 57  YEAHLWDKNCWNESQNKKGRQVYLGAYDNEEAAARAYDLAALKYWGHDTILNFPLSNYEE 116
           YEAHLWDKN WNE+Q KKGRQVYLGAYD E+AAARAYDLAALKYWG DTILNFPL NYEE
Sbjct: 71  YEAHLWDKNSWNETQTKKGRQVYLGAYDEEDAAARAYDLAALKYWGRDTILNFPLCNYEE 130

Query: 117 ELVEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGT 176
           ++ EME QSKEEYIGSLRRKSSGFSRGVSKYRGVA+HHHNGRWEARIGRVFGNKYLYLGT
Sbjct: 131 DIKEMESQSKEEYIGSLRRKSSGFSRGVSKYRGVAKHHHNGRWEARIGRVFGNKYLYLGT 190

Query: 177 YATQEEAAQAYDRAAIEYRGLNAVTNFDLSKYIKWLRPNNNQNNPKPSNPQQNPNSDDTS 236
           YATQEEAA AYD AAIEYRGLNAVTNFD+S+Y+K   P N  +    +N  ++P+S D S
Sbjct: 191 YATQEEAAIAYDIAAIEYRGLNAVTNFDISRYLKLPVPENPIDT--ANNLLESPHS-DLS 247

Query: 237 PIPKLNQETSSGSETSAPPPRSGATAGGSGSASSALGLLLQSSKYKEMVEKTSTDCLSTS 296
           P  K N E+      S+             +      LL  S    E V        ST 
Sbjct: 248 PFIKPNHESDLSQSQSS----------SEDNDDRKTKLLKSSPLVAEEVIGP-----STP 292

Query: 297 SEPGSSHRIFPDDIQTMFFDCQDSSSYT-EGDDVLLGDLNPYIFPTFYSELDN 348
            E     R FP+DIQT +F CQ+S   T E DDV+ GDL+ ++ P FYSEL++
Sbjct: 293 PEIAPPRRSFPEDIQT-YFGCQNSGKLTAEEDDVIFGDLDSFLTPDFYSELND 344

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.
Arabidopsis thaliana (taxid: 3702)

>sp|A0JPZ8|AP2L3_ARATH AP2-like ethylene-responsive transcription factor At1g79700 OS=Arabidopsis thaliana GN=At1g79700 PE=2 SV=1

 Score =  308 bits (790), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 195/355 (54%), Positives = 228/355 (64%), Gaps = 63/355 (17%)

Query: 1   MAKTSRQSQKNTTTNPNNNNTVTTK--------TKRTRKSVPRDSPPQRSSIYRGVTRHR 52
           MAK S +S+K    +  ++ T +          +KR RKS PR++P QRSS YRGVTRHR
Sbjct: 1   MAKVSGRSKKTIVDDEISDKTASASESASIALTSKRKRKSPPRNAPLQRSSPYRGVTRHR 60

Query: 53  WTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDNEEAAARAYDLAALKYWGHDTILNFPLS 112
           WTGRYEAHLWDKN WN++Q KKGRQVYLGAYD EEAAARAYDLAALKYWG DT+LNFPL 
Sbjct: 61  WTGRYEAHLWDKNSWNDTQTKKGRQVYLGAYDEEEAAARAYDLAALKYWGRDTLLNFPLP 120

Query: 113 NYEEELVEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYL 172
           +Y+E++ EMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVF     
Sbjct: 121 SYDEDVKEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVF----- 175

Query: 173 YLGTYATQEEAAQAYDRAAIEYRGLNAVTNFDLSKYIKWLRPNNNQNNPKPSNPQQNPNS 232
                ATQEEAA AYD AAIEYRGLNAVTNFD+S+Y+          NP   N   +   
Sbjct: 176 -----ATQEEAAIAYDIAAIEYRGLNAVTNFDVSRYL----------NP---NAAADKAD 217

Query: 233 DDTSPIPKLNQETSSGSETSAPPPRSGATAGGSGSASSALGLLLQSSKYKEMVEKTSTDC 292
            D+ PI   ++E  S  +  +P                         K +E++E      
Sbjct: 218 SDSKPIRSPSREPESSDDNKSP-------------------------KSEEVIEP----- 247

Query: 293 LSTSSEPGSSHRIFPDDIQTMFFDCQDSSSYTEGDDVLLGDLNPYIFPTFYSELD 347
            STS E   + R FPDDIQT +F CQDS      +DV+    N YI P FY+E D
Sbjct: 248 -STSPEVIPTRRSFPDDIQT-YFGCQDSGKLATEEDVIFDCFNSYINPGFYNEFD 300

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6X5Y6|WRI1_ARATH Ethylene-responsive transcription factor WRI1 OS=Arabidopsis thaliana GN=WRI1 PE=2 SV=1

 Score =  285 bits (730), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 148/198 (74%), Positives = 162/198 (81%), Gaps = 9/198 (4%)

Query: 25  KTKRTRKSVPR-------DSPP--QRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKG 75
           + KR +KS P         SP   +RSSIYRGVTRHRWTGR+EAHLWDK+ WN  QNKKG
Sbjct: 37  RAKRAKKSSPSGDKSHNPTSPASTRRSSIYRGVTRHRWTGRFEAHLWDKSSWNSIQNKKG 96

Query: 76  RQVYLGAYDNEEAAARAYDLAALKYWGHDTILNFPLSNYEEELVEMEGQSKEEYIGSLRR 135
           +QVYLGAYD+EEAAA  YDLAALKYWG DTILNFP   Y +EL EM+  +KEEY+ SLRR
Sbjct: 97  KQVYLGAYDSEEAAAHTYDLAALKYWGPDTILNFPAETYTKELEEMQRVTKEEYLASLRR 156

Query: 136 KSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAQAYDRAAIEYR 195
           +SSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTY TQEEAA AYD AAIEYR
Sbjct: 157 QSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYNTQEEAAAAYDMAAIEYR 216

Query: 196 GLNAVTNFDLSKYIKWLR 213
           G NAVTNFD+S YI  L+
Sbjct: 217 GANAVTNFDISNYIDRLK 234

May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional activator involved in the activation of a subset of sugar-responsive genes and the control of carbon flow from sucrose import to oil accumulation in developing seeds. Binds to the GCC-box pathogenesis-related promoter element. Promotes sugar uptake and seed oil accumulation by glycolysis. Required for embryo development, seed germination and, indirectly, for seedling establishment. Negative regulator of the ABA-mediated germination inhibition.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6PQQ3|AIL5_ARATH AP2-like ethylene-responsive transcription factor AIL5 OS=Arabidopsis thaliana GN=AIL5 PE=2 SV=2

 Score =  278 bits (711), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 125/169 (73%), Positives = 146/169 (86%)

Query: 40  QRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDNEEAAARAYDLAALK 99
           QR+SIYRGVTRHRWTGRYEAHLWD +C  E Q++KGRQVYLG YD E+ AARAYDLAALK
Sbjct: 199 QRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEDKAARAYDLAALK 258

Query: 100 YWGHDTILNFPLSNYEEELVEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRW 159
           YWG  T  NFP+SNYE EL EM+  +++E++ SLRRKSSGFSRG S YRGV RHH +GRW
Sbjct: 259 YWGPTTTTNFPISNYESELEEMKHMTRQEFVASLRRKSSGFSRGASMYRGVTRHHQHGRW 318

Query: 160 EARIGRVFGNKYLYLGTYATQEEAAQAYDRAAIEYRGLNAVTNFDLSKY 208
           +ARIGRV GNK LYLGT++TQEEAA+AYD AAI++RGLNAVTNFD+S+Y
Sbjct: 319 QARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDISRY 367

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LSN2|BBM2_BRANA AP2-like ethylene-responsive transcription factor BBM2 OS=Brassica napus GN=BBM2 PE=2 SV=1

 Score =  273 bits (698), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 136/216 (62%), Positives = 163/216 (75%), Gaps = 9/216 (4%)

Query: 2   AKTSRQSQKNTTTNPNNN---NTVTTKTKRTRKSV---PR---DSPPQRSSIYRGVTRHR 52
           AK    S  ++T+  NNN   N +  + K    SV   P+   +S  QR+SIYRGVTRHR
Sbjct: 159 AKGLSLSMNSSTSCDNNNYSSNNLVAQGKTIDDSVEATPKKTIESFGQRTSIYRGVTRHR 218

Query: 53  WTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDNEEAAARAYDLAALKYWGHDTILNFPLS 112
           WTGRYEAHLWD +C  E Q +KGRQVYLG YD EE AARAYDLAALKYWG  T  NFP+S
Sbjct: 219 WTGRYEAHLWDNSCKREGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGTTTTTNFPMS 278

Query: 113 NYEEELVEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYL 172
            YE+E+ EM+  +++EY+ SLRRKSSGFSRG S YRGV RHH +GRW+ARIGRV GNK L
Sbjct: 279 EYEKEIEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDL 338

Query: 173 YLGTYATQEEAAQAYDRAAIEYRGLNAVTNFDLSKY 208
           YLGT+ TQEEAA+AYD AAI++RGL AVTNFD+++Y
Sbjct: 339 YLGTFGTQEEAAEAYDIAAIKFRGLTAVTNFDMNRY 374

Transcription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis.

Brassica napus (taxid: 3708)

>sp|Q5YGP7|PLET2_ARATH AP2-like ethylene-responsive transcription factor PLT2 OS=Arabidopsis thaliana GN=PLT2 PE=2 SV=1

 Score =  272 bits (695), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 126/199 (63%), Positives = 161/199 (80%), Gaps = 3/199 (1%)

Query: 13  TTNPNNNNTVTTKTKRTRKSVPR---DSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNE 69
           T+  N+++T  T      ++ PR   ++  QR+SIYRGVTRHRWTGRYEAHLWD +C  E
Sbjct: 156 TSADNSSSTTNTSGGAIVEATPRRTLETFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRRE 215

Query: 70  SQNKKGRQVYLGAYDNEEAAARAYDLAALKYWGHDTILNFPLSNYEEELVEMEGQSKEEY 129
            Q++KGRQVYLG YD EE AARAYDLAALKYWG  T  NFP++NYE+E+ EM+  +++E+
Sbjct: 216 GQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGPSTTTNFPITNYEKEVEEMKNMTRQEF 275

Query: 130 IGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAQAYDR 189
           + S+RRKSSGFSRG S YRGV RHH +GRW+ARIGRV GNK LYLGT++T+EEAA+AYD 
Sbjct: 276 VASIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDI 335

Query: 190 AAIEYRGLNAVTNFDLSKY 208
           AAI++RGLNAVTNF++++Y
Sbjct: 336 AAIKFRGLNAVTNFEINRY 354

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs).

Arabidopsis thaliana (taxid: 3702)

>sp|Q6PQQ4|BBM_ARATH AP2-like ethylene-responsive transcription factor BBM OS=Arabidopsis thaliana GN=BBM PE=2 SV=2

 Score =  271 bits (694), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 129/189 (68%), Positives = 152/189 (80%), Gaps = 5/189 (2%)

Query: 20  NTVTTKTKRTRKSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVY 79
           + V T  K+T +S       QR+SIYRGVTRHRWTGRYEAHLWD +C  E Q +KGRQVY
Sbjct: 191 DVVETTPKKTIESFG-----QRTSIYRGVTRHRWTGRYEAHLWDNSCKREGQTRKGRQVY 245

Query: 80  LGAYDNEEAAARAYDLAALKYWGHDTILNFPLSNYEEELVEMEGQSKEEYIGSLRRKSSG 139
           LG YD EE AARAYDLAALKYWG  T  NFPLS YE+E+ EM+  +++EY+ SLRRKSSG
Sbjct: 246 LGGYDKEEKAARAYDLAALKYWGTTTTTNFPLSEYEKEVEEMKHMTRQEYVASLRRKSSG 305

Query: 140 FSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAQAYDRAAIEYRGLNA 199
           FSRG S YRGV RHH +GRW+ARIGRV GNK LYLGT+ TQEEAA+AYD AAI++RGL+A
Sbjct: 306 FSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGLSA 365

Query: 200 VTNFDLSKY 208
           VTNFD+++Y
Sbjct: 366 VTNFDMNRY 374

Transcription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L3U3|BBM1_BRANA AP2-like ethylene-responsive transcription factor BBM1 OS=Brassica napus GN=BBM1 PE=2 SV=1

 Score =  270 bits (691), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 124/173 (71%), Positives = 145/173 (83%)

Query: 36  DSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDNEEAAARAYDL 95
           +S  QR+SIYRGVTRHRWTGRYEAHLWD +C  E Q +KGRQVYLG YD EE AARAYDL
Sbjct: 202 ESFGQRTSIYRGVTRHRWTGRYEAHLWDNSCKREGQTRKGRQVYLGGYDKEEKAARAYDL 261

Query: 96  AALKYWGHDTILNFPLSNYEEELVEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHH 155
           AALKYWG  T  NFP+S YE+E+ EM+  +++EY+ SLRRKSSGFSRG S YRGV RHH 
Sbjct: 262 AALKYWGTTTTTNFPMSEYEKEVEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQ 321

Query: 156 NGRWEARIGRVFGNKYLYLGTYATQEEAAQAYDRAAIEYRGLNAVTNFDLSKY 208
           +GRW+ARIGRV GNK LYLGT+ TQEEAA+AYD AAI++RGL AVTNFD+++Y
Sbjct: 322 HGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGLTAVTNFDMNRY 374

Transcription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis.

Brassica napus (taxid: 3708)

>sp|Q1PFE1|AIL1_ARATH AP2-like ethylene-responsive transcription factor AIL1 OS=Arabidopsis thaliana GN=AIL1 PE=2 SV=1

 Score =  270 bits (690), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 127/184 (69%), Positives = 152/184 (82%), Gaps = 3/184 (1%)

Query: 28  RTRKSVPR---DSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYD 84
           + ++SVPR   DS  QR+S YRGVTRHRWTGRYEAHLWD +C  E Q ++GRQVYLG YD
Sbjct: 204 QVKESVPRKSVDSYGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRRGRQVYLGGYD 263

Query: 85  NEEAAARAYDLAALKYWGHDTILNFPLSNYEEELVEMEGQSKEEYIGSLRRKSSGFSRGV 144
            EE AARAYDLAALKYWG  T LNFPLSNYE+E+ E+   +++E++  LRR SSGFSRG 
Sbjct: 264 EEEKAARAYDLAALKYWGPTTHLNFPLSNYEKEIEELNNMNRQEFVAMLRRNSSGFSRGA 323

Query: 145 SKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAQAYDRAAIEYRGLNAVTNFD 204
           S YRGV RHH +GRW+ARIGRV GNK LYLGT++TQEEAA+AYD AAI++RGLNAVTNFD
Sbjct: 324 SVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFD 383

Query: 205 LSKY 208
           +++Y
Sbjct: 384 INRY 387

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5YGP8|PLET1_ARATH AP2-like ethylene-responsive transcription factor PLT1 OS=Arabidopsis thaliana GN=PLT1 PE=2 SV=1

 Score =  267 bits (682), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 122/199 (61%), Positives = 159/199 (79%), Gaps = 2/199 (1%)

Query: 10  KNTTTNPNNNNTVTTKTKRTRKSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNE 69
           + T  N +       +T   R+++  D+  QR+SIYRGVTRHRWTGRYEAHLWD +C  E
Sbjct: 149 ETTGDNASGGALAVVETATPRRAL--DTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRRE 206

Query: 70  SQNKKGRQVYLGAYDNEEAAARAYDLAALKYWGHDTILNFPLSNYEEELVEMEGQSKEEY 129
            Q++KGRQVYLG YD E+ AAR+YDLAALKYWG  T  NFP++NYE+E+ EM+  +++E+
Sbjct: 207 GQSRKGRQVYLGGYDKEDKAARSYDLAALKYWGPSTTTNFPITNYEKEVEEMKHMTRQEF 266

Query: 130 IGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAQAYDR 189
           + ++RRKSSGFSRG S YRGV RHH +GRW+ARIGRV GNK LYLGT++T+EEAA+AYD 
Sbjct: 267 VAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDI 326

Query: 190 AAIEYRGLNAVTNFDLSKY 208
           AAI++RGLNAVTNF++++Y
Sbjct: 327 AAIKFRGLNAVTNFEINRY 345

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs).

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	348
359484870	347	PREDICTED: AP2-like ethylene-responsive	0.974	0.976	0.687	1e-123
225443245	361	PREDICTED: AP2-like ethylene-responsive	0.994	0.958	0.698	1e-122
356564882	370	PREDICTED: AP2-like ethylene-responsive	0.902	0.848	0.696	1e-115
356510610	347	PREDICTED: AP2-like ethylene-responsive	0.899	0.902	0.688	1e-115
297743703	323	unnamed protein product [Vitis vinifera]	0.908	0.978	0.649	1e-115
449529909	361	PREDICTED: AP2-like ethylene-responsive	0.971	0.936	0.658	1e-114
449457961	365	PREDICTED: AP2-like ethylene-responsive	0.939	0.895	0.642	1e-114
357479951	356	AP2 domain-containing transcription fact	0.893	0.873	0.663	1e-114
356500695	362	PREDICTED: AP2-like ethylene-responsive	0.928	0.892	0.675	1e-113
224143892	353	AP2 domain-containing transcription fact	0.968	0.954	0.660	1e-113

>gi|359484870|ref|XP_002273046.2| PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 [Vitis vinifera]

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 242/352 (68%), Positives = 270/352 (76%), Gaps = 13/352 (3%)

Query: 1   MAKTSRQSQKNTT-TNPNNNNTVTTKTKRTRKSVPRDSPPQRSSIYRGVTRHRWTGRYEA 59
           MAK S+Q+ KN+  +N  N     TK KRTRK+VPRDSPPQRSSIYRGVTRHRWTGRYEA
Sbjct: 1   MAKLSQQNHKNSANSNATNTTLSVTKVKRTRKTVPRDSPPQRSSIYRGVTRHRWTGRYEA 60

Query: 60  HLWDKNCWNESQNKKGRQVYLGAYDNEEAAARAYDLAALKYWGHDTILNFPLSNYEEELV 119
           HLWDKNCWNESQNKKGRQ   GAY +EEAAA AYDLAALKYWG +TILNFPLS YE+EL 
Sbjct: 61  HLWDKNCWNESQNKKGRQ---GAYHDEEAAAHAYDLAALKYWGPETILNFPLSTYEKELK 117

Query: 120 EMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYAT 179
           EMEG S+EEYIGSLRR+SSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYAT
Sbjct: 118 EMEGLSREEYIGSLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYAT 177

Query: 180 QEEAAQAYDRAAIEYRGLNAVTNFDLSKYIKWLRPNNNQNNPKPSNPQQN----PNSDDT 235
           QEEAA AYD AAIEYRGLNAVTNFDLS+YIKWL+PN N    +P+NP  +    PN +  
Sbjct: 178 QEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLKPNQNNPCEQPNNPNLDSNLTPNPNHD 237

Query: 236 SPIPKLNQETSSGSETSAPPPRSGATAGGSGSASSALGLLLQSSKYKEMVEKTS-TDCLS 294
             I  LN   +SG+   + PP    T      ASSALGLLLQSSK+KEM+E T+  D LS
Sbjct: 238 FGISFLNHPQTSGTAACSEPP---LTQTRPPIASSALGLLLQSSKFKEMMEMTTAADHLS 294

Query: 295 TSSEPGSSHRIFPDDIQTMFFDCQDSSSYTEGDDVLLGDLNPYIFPTFYSEL 346
           T  E       FPDDIQT +F+CQDS SY EGDDV+  +LN +I P F  + 
Sbjct: 295 TPPESELPRCSFPDDIQT-YFECQDSGSYEEGDDVIFSELNSFIPPMFQCDF 345

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443245|ref|XP_002272159.1| PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060-like [Vitis vinifera]

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 252/361 (69%), Positives = 277/361 (76%), Gaps = 15/361 (4%)

Query: 1   MAKTSRQSQKNTTTNPNNNNTVTTKTKRTRKSVPRDSPPQRSSIYRGVTRHRWTGRYEAH 60
           MAKTS++SQK T  + NNN     K KRTRKSVPRDSPPQRSSI+RGVTRHRWTGRYEAH
Sbjct: 1   MAKTSQKSQKTTGNSTNNNGGSVAKVKRTRKSVPRDSPPQRSSIFRGVTRHRWTGRYEAH 60

Query: 61  LWDKNCWNESQNKKGRQVYLGAYDNEEAAARAYDLAALKYWGHDTILNFPLSNYEEELVE 120
           LWDKNCWNESQNKKGRQVYLGAYD+EEAAA AYDLAALKYWG +TILNFPLS Y+EEL E
Sbjct: 61  LWDKNCWNESQNKKGRQVYLGAYDDEEAAAHAYDLAALKYWGQETILNFPLSAYQEELKE 120

Query: 121 MEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQ 180
           MEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQ
Sbjct: 121 MEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQ 180

Query: 181 EEAAQAYDRAAIEYRGLNAVTNFDLSKYIKWLRPNNN------QNNPKPSNPQQNPNSDD 234
           EEAA AYD AAIEYRGLNAVTNFDLS+YIKWLRPN +      QN    S+P  NPN  D
Sbjct: 181 EEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLRPNQSDSVGSMQNPNGQSSPAPNPNPSD 240

Query: 235 TSPIPKLNQETSSGSETSAPPPRS------GATAGGSGSASSALGLLLQSSKYKEMVEKT 288
                   Q+      T  P   +        + GG G ASSALGLLLQSSK+KEM+E+T
Sbjct: 241 HELGLSFLQQQHGSDATELPLSHARSGAGGSGSGGGGGGASSALGLLLQSSKFKEMLERT 300

Query: 289 ST-DC-LSTSSEPGSSHRIFPDDIQTMFFDCQDSSSYTEGDDVLLGDLNPYIFPTFYSEL 346
           ST DC L+   +       FPDDIQT +FDCQ+++SY E DD++ GDL  +  P F  EL
Sbjct: 301 STADCPLTPPDQIEMPRSSFPDDIQT-YFDCQETNSYGESDDIIFGDLKYFSSPMFQCEL 359

Query: 347 D 347
           D
Sbjct: 360 D 360

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564882|ref|XP_003550676.1| PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060-like [Glycine max]

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 230/330 (69%), Positives = 251/330 (76%), Gaps = 16/330 (4%)

Query: 17  NNNNTVTTKTKRTRKSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGR 76
           N  NTVTTK KRTR+SVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDK+CWNESQNKKGR
Sbjct: 23  NVTNTVTTKVKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKHCWNESQNKKGR 82

Query: 77  QVYLGAYDNEEAAARAYDLAALKYWGHDTILNFPLSNYEEELVEMEGQSKEEYIGSLRRK 136
           QVYLGAYDNEEAAA AYDLAALKYWG DTILNFPLSNY  EL EMEGQS+EEYIGSLRRK
Sbjct: 83  QVYLGAYDNEEAAAHAYDLAALKYWGQDTILNFPLSNYLNELKEMEGQSREEYIGSLRRK 142

Query: 137 SSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAQAYDRAAIEYRG 196
           SSGFSRG+SKYRGVARHHHNGRWEARIG+VFGNKYLYLGTYATQEEAA AYD AAIEYRG
Sbjct: 143 SSGFSRGISKYRGVARHHHNGRWEARIGKVFGNKYLYLGTYATQEEAATAYDLAAIEYRG 202

Query: 197 LNAVTNFDLSKYIKWLRPNNNQNN--------PKPSNPQQNPNSDDTSPIPKLNQETS-- 246
           LNAVTNFDLS+YIKWL+PNNN NN           +    N  ++  +P P   QE S  
Sbjct: 203 LNAVTNFDLSRYIKWLKPNNNTNNVIDDQISINLTNINNNNNCTNSFTPSPDQEQEASFF 262

Query: 247 ----SGSETSAPPPRSGATAGGSGSASSALGLLLQSSKYKEMVEKTSTDCL-STSSEPGS 301
               S + T               SA+SAL LLLQSSK+KEM+E TS   L ST  E   
Sbjct: 263 HNKDSLNNTIVEEVTLVPHQPRPASATSALELLLQSSKFKEMMEMTSVANLSSTQMESEL 322

Query: 302 SHRIFPDDIQTMFFDCQDSSSYTEGDDVLL 331
               FPD IQT +F+ +DS+ Y EGDD++ 
Sbjct: 323 PQCTFPDHIQT-YFEYEDSNRYEEGDDLMF 351

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510610|ref|XP_003524030.1| PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060-like [Glycine max]

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 230/334 (68%), Positives = 254/334 (76%), Gaps = 21/334 (6%)

Query: 22  VTTKTKRTRKSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLG 81
           VT K KRTR+SVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQ   G
Sbjct: 23  VTAKVKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQ---G 79

Query: 82  AYDNEEAAARAYDLAALKYWGHDTILNFPLSNYEEELVEMEGQSKEEYIGSLRRKSSGFS 141
           AYD+EEAAA AYDLAALKYWG DTILNFPLS Y+ EL EMEGQS+EEYIGSLRRKSSGFS
Sbjct: 80  AYDDEEAAAHAYDLAALKYWGQDTILNFPLSTYQNELKEMEGQSREEYIGSLRRKSSGFS 139

Query: 142 RGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAQAYDRAAIEYRGLNAVT 201
           RGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAA AYD AAIEYRG+NAVT
Sbjct: 140 RGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGVNAVT 199

Query: 202 NFDLSKYIKWLRPNNNQNNPKPSNPQQNP--------NSDDTSPIPKLN-QETSSGSETS 252
           NFDLS+YIKWL+PNNN      +    NP        NS+        N QE+ +  E +
Sbjct: 200 NFDLSRYIKWLKPNNNNTTVNSNLIDSNPNCETNFTSNSNQQQGFNFFNRQESFNNEEAA 259

Query: 253 APPPRSGATAGGSGSASSALGLLLQSSKYKEMVEKTSTDCLST-SSEPGSSHRIFPDDIQ 311
              PR          A+SALGLLLQSSK+KEM+E TS   LST  SE       FPDDIQ
Sbjct: 260 MTQPRPAV-------ATSALGLLLQSSKFKEMMEMTSATDLSTPPSESELPSCTFPDDIQ 312

Query: 312 TMFFDCQDSSSYTEGDDVLLGDLNPYIFPTFYSE 345
           T +F+C+DS  Y EGDD++   LN ++ P F+ +
Sbjct: 313 T-YFECEDSHRYGEGDDIMFSVLNGFVPPMFHCD 345

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743703|emb|CBI36586.3| unnamed protein product [Vitis vinifera]

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 228/351 (64%), Positives = 254/351 (72%), Gaps = 35/351 (9%)

Query: 1   MAKTSRQSQKNTT-TNPNNNNTVTTKTKRTRKSVPRDSPPQRSSIYRGVTRHRWTGRYEA 59
           MAK S+Q+ KN+  +N  N     TK KRTRK+VPRDSPPQRSSIYRGVTRHRWTGRYEA
Sbjct: 1   MAKLSQQNHKNSANSNATNTTLSVTKVKRTRKTVPRDSPPQRSSIYRGVTRHRWTGRYEA 60

Query: 60  HLWDKNCWNESQNKKGRQVYLGAYDNEEAAARAYDLAALKYWGHDTILNFPLSNYEEELV 119
           HLWDKNCWNESQNKKGRQVYLGAY +EEAAA AYDLAALKYWG +TILNFPLS YE+EL 
Sbjct: 61  HLWDKNCWNESQNKKGRQVYLGAYHDEEAAAHAYDLAALKYWGPETILNFPLSTYEKELK 120

Query: 120 EMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYAT 179
           EMEG S+EEYIGSLRR+SSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYAT
Sbjct: 121 EMEGLSREEYIGSLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYAT 180

Query: 180 QEEAAQAYDRAAIEYRGLNAVTNFDLSKYIKWLRPNNNQNNPKPSNPQQN----PNSDDT 235
           QEEAA AYD AAIEYRGLNAVTNFDLS+YIKWL+PN N    +P+NP  +    PN +  
Sbjct: 181 QEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLKPNQNNPCEQPNNPNLDSNLTPNPNHD 240

Query: 236 SPIPKLNQETSSGSETSAPPPRSGATAGGSGSASSALGLLLQSSKYKEMVEKTSTDCLST 295
             I  LN   +SG+                            + K  EM   T+ D LST
Sbjct: 241 FGISFLNHPQTSGT---------------------------AACKMMEMT--TAADHLST 271

Query: 296 SSEPGSSHRIFPDDIQTMFFDCQDSSSYTEGDDVLLGDLNPYIFPTFYSEL 346
             E       FPDDIQT +F+CQDS SY EGDDV+  +LN +I P F  + 
Sbjct: 272 PPESELPRCSFPDDIQT-YFECQDSGSYEEGDDVIFSELNSFIPPMFQCDF 321

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449529909|ref|XP_004171940.1| PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060-like [Cucumis sativus]

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 233/354 (65%), Positives = 266/354 (75%), Gaps = 16/354 (4%)

Query: 1   MAKTSRQSQKNTTTNPNNNNTVTTKTKRTRKSVPRDSPPQRSSIYRGVTRHRWTGRYEAH 60
           M K++ Q  +    N  NN  + TKTKRTR+SVPRDSPPQRSSIYRGVTRHRWTGRYEAH
Sbjct: 1   MTKSTAQQVQIREAN-GNNVVMKTKTKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAH 59

Query: 61  LWDKNCWNESQNKKGRQVYLGAYDNEEAAARAYDLAALKYWGHDTILNFPLSNYEEELVE 120
           LWDKNCWNESQNKKGRQVYLGAYD+EEAAA AYDLAALKYWG +TILNFPL+ Y++EL E
Sbjct: 60  LWDKNCWNESQNKKGRQVYLGAYDDEEAAAHAYDLAALKYWGQETILNFPLTTYQKELKE 119

Query: 121 MEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQ 180
           MEGQS+EEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQ
Sbjct: 120 MEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQ 179

Query: 181 EEAAQAYDRAAIEYRGLNAVTNFDLSKYIKWLRPNNN---QNNPKPSNPQQNPNSD---D 234
           EEAA AYD AAIEYRGLNAVTNFDLS+YIKWL+P+N+    NN   +     P+     D
Sbjct: 180 EEAATAYDIAAIEYRGLNAVTNFDLSRYIKWLKPSNDVVYDNNRILTVDSILPSPKQELD 239

Query: 235 TSPIPKLNQETSSGSETSAPP--PRSGATAGGSGSASSALGLLLQSSKYKEMVEKTS-TD 291
               P    ++S+ S T  P   P S  +   + + +SALGLLLQSSK+KEM+E  S  +
Sbjct: 240 LGLFPPDQNQSSTDSATPEPIALPPSRRSTTSTTTTTSALGLLLQSSKFKEMMEMNSAAE 299

Query: 292 CLSTSSEPGSSHR---IFPDDIQTMFFDCQDSSSYT--EGDDVLLGDLNPYIFP 340
           C ST S      R   +FPDD+QT FF C+ S SY   E DD +  D N ++ P
Sbjct: 300 CPSTPSSSEQLERRRCLFPDDVQT-FFACETSGSYCYGEADDAMFSDFNSFVPP 352

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457961|ref|XP_004146716.1| PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060-like [Cucumis sativus]

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 237/369 (64%), Positives = 270/369 (73%), Gaps = 42/369 (11%)

Query: 1   MAKTSRQSQKNTTTNPNNNNTVTTKTKRTRKSVPRDSPPQRSSIYRGVTRHRWTGRYEAH 60
           M K++ Q  +    N  NN  + TKTKRTR+SVPRDSPPQRSSIYRGVTRHRWTGRYEAH
Sbjct: 1   MTKSTAQQVQIREAN-GNNVVMKTKTKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAH 59

Query: 61  LWDKNCWNESQNKKGRQVYLGAYDNEEAAARAYDLAALKYWGHDTILNFPLSNYEEELVE 120
           LWDKNCWNESQNKKGRQVYLGAYD+EEAAA AYDLAALKYWG +TILNFPL+ Y++EL E
Sbjct: 60  LWDKNCWNESQNKKGRQVYLGAYDDEEAAAHAYDLAALKYWGQETILNFPLTTYQKELKE 119

Query: 121 MEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQ 180
           MEGQS+EEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQ
Sbjct: 120 MEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQ 179

Query: 181 EEAAQAYDRAAIEYRGLNAVTNFDLSKYIKWLRPNNN---QNN---------PKPSN--- 225
           EEAA AYD AAIEYRGLNAVTNFDLS+YIKWL+P+N+    NN         P P     
Sbjct: 180 EEAATAYDIAAIEYRGLNAVTNFDLSRYIKWLKPSNDVVYDNNRILTVDSILPSPKQELD 239

Query: 226 -----PQQNPNSDDT-SPIPKLNQETSSGSETSAPPPR--SGATAGGSGSASSALGLLLQ 277
                P QN +S D+ +P P            + PP R  + +T   + + +SALGLLLQ
Sbjct: 240 LGLFPPDQNQSSTDSATPEP-----------IALPPSRRSTTSTTTTTTTTTSALGLLLQ 288

Query: 278 SSKYKEMVEKTS-TDCLSTSSEPGSSHR---IFPDDIQTMFFDCQDSSSYT--EGDDVLL 331
           SSK+KEM+E  S  +C ST S      R   +FPDD+QT FF C+ S SY   E DD + 
Sbjct: 289 SSKFKEMMEMNSAAECPSTPSSSEQLERRRCLFPDDVQT-FFACETSGSYCYGEADDAMF 347

Query: 332 GDLNPYIFP 340
            D N ++ P
Sbjct: 348 SDFNSFVPP 356

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357479951|ref|XP_003610261.1| AP2 domain-containing transcription factor [Medicago truncatula] gi|355511316|gb|AES92458.1| AP2 domain-containing transcription factor [Medicago truncatula]

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 229/345 (66%), Positives = 256/345 (74%), Gaps = 34/345 (9%)

Query: 19  NNTVTTKTKRTRKSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQV 78
           +NTVTTK KRTRKSVPR SPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQ 
Sbjct: 25  SNTVTTKAKRTRKSVPRTSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQ- 83

Query: 79  YLGAYDNEEAAARAYDLAALKYWGHDTILNFPLSNYEEELVEMEGQSKEEYIGSLRRKSS 138
             GAYDNEE AA AYDLAALKYWG DTI+NFPLSNY++EL+EME QS+EEYIGSLRRKSS
Sbjct: 84  --GAYDNEETAAHAYDLAALKYWGQDTIINFPLSNYQKELIEMESQSREEYIGSLRRKSS 141

Query: 139 GFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAQAYDRAAIEYRGLN 198
           GFSRGVSKYRGVARHHHNGRWEARIG+VFGNKYLYLGTYATQEEAA AYD AAIEYRGLN
Sbjct: 142 GFSRGVSKYRGVARHHHNGRWEARIGKVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLN 201

Query: 199 AVTNFDLSKYIKWLRPNNNQN-----------NPKPSNPQQNPNSDDTSPIPKLNQETS- 246
           AVTNFDLS+YIKWL+PNNN N           +   ++   + NS++      ++ E S 
Sbjct: 202 AVTNFDLSRYIKWLKPNNNNNDDNNKSNINLCDINSNSSANDSNSNEELEFSLVDNEISL 261

Query: 247 --SGSETSAPPPRSGATAGGSGSASSALGLLLQSSKYKEMVEKTS-TDCLSTSSEPGS-S 302
             S  E +   PR         SA+SAL LLLQSSK+KEMVE  S T  +ST+ E    S
Sbjct: 262 NNSIDEATLVQPR-------PTSATSALELLLQSSKFKEMVEMASMTSNVSTTLESDQLS 314

Query: 303 HRIFPDDIQTMFFDCQDSSSYTEGDDVLLGDLNPYIFPTFYSELD 347
              FPDDIQT F        Y   +D +L DLN  I PTF+ + +
Sbjct: 315 QCAFPDDIQTYF-------EYENFNDTMLEDLNS-IMPTFHYDFE 351

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500695|ref|XP_003519167.1| PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060-like [Glycine max]

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 237/351 (67%), Positives = 262/351 (74%), Gaps = 28/351 (7%)

Query: 1   MAKTSR-QSQKNTTTNPNNN----NTVTTKTKRTRKSVPRDSPPQRSSIYRGVTRHRWTG 55
           MAK S+ ++QKN  TN + N    NTV TK KRTR+SVPRDSPPQRSSIYRGVTRHRWTG
Sbjct: 1   MAKKSQLRTQKNNATNDDINLNATNTVITKVKRTRRSVPRDSPPQRSSIYRGVTRHRWTG 60

Query: 56  RYEAHLWDKNCWNESQNKKGRQVYLGAYDNEEAAARAYDLAALKYWGHDTILNFPLSNYE 115
           RYEAHLWDK+CWNESQNKKGRQ   GAYDNEEAAA AYDLAALKYWG DTILNFPLSNY 
Sbjct: 61  RYEAHLWDKHCWNESQNKKGRQ---GAYDNEEAAAHAYDLAALKYWGQDTILNFPLSNYL 117

Query: 116 EELVEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLG 175
            EL EMEGQS+EEYIGSLRRKSSGFSRG+SKYRGVARHHHNGRWEARIG+VFGNKYLYLG
Sbjct: 118 NELKEMEGQSREEYIGSLRRKSSGFSRGISKYRGVARHHHNGRWEARIGKVFGNKYLYLG 177

Query: 176 TYATQEEAAQAYDRAAIEYRGLNAVTNFDLSKYIKWLRPNN-NQNNPKPSNPQQN----- 229
           TYATQEEAA AYD AAIEYRGLNAVTNFDLS+YIKWL+PNN N NN + S    N     
Sbjct: 178 TYATQEEAATAYDLAAIEYRGLNAVTNFDLSRYIKWLKPNNTNSNNDQISINLTNINNNC 237

Query: 230 -----PNSDDTSPIPKLNQETSSGS---ETSAPPPRSGATAGGSGSASSALGLLLQSSKY 281
                PN D    +   + + S  +   E +   P     A    SA+ AL LLLQSSK+
Sbjct: 238 TNNFIPNPDQEQEVSFFHNQDSLNNTIVEEATLVPHQPRPA----SATLALELLLQSSKF 293

Query: 282 KEMVEKTSTDCLSTSSEPGSSHRI-FPDDIQTMFFDCQDSSSYTEGDDVLL 331
           KEMVE TS   LST  E     +  FPD IQT +F+ +DS+ Y EGDD+L 
Sbjct: 294 KEMVEMTSVANLSTQMESDQLPQCTFPDHIQT-YFEYEDSNKYEEGDDLLF 343

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143892|ref|XP_002325111.1| AP2 domain-containing transcription factor [Populus trichocarpa] gi|222866545|gb|EEF03676.1| AP2 domain-containing transcription factor [Populus trichocarpa]

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 239/362 (66%), Positives = 275/362 (75%), Gaps = 25/362 (6%)

Query: 1   MAKTSRQSQKNTTTNPNNNNTVTTKTKRTRKSVPRDSPPQRSSIYRGVTRHRWTGRYEAH 60
           MAK S+++ KNT +N NN     TK KRTR+SVPRDSPPQRSSIYRGVTRHRWTGRYEAH
Sbjct: 1   MAKLSQKNTKNTASNNNNTTNGVTKVKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAH 60

Query: 61  LWDKNCWNESQNKKGRQVYLGAYDNEEAAARAYDLAALKYWGHDTILNFPLSNYEEELVE 120
           LWDKNCWNESQNKKGRQ   GAYD+EEAAA AYDLAALKYWG +TILNFPLS Y+ EL E
Sbjct: 61  LWDKNCWNESQNKKGRQ---GAYDDEEAAAHAYDLAALKYWGPETILNFPLSTYQNELKE 117

Query: 121 MEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQ 180
           MEGQS+EE IGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQ
Sbjct: 118 MEGQSREECIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQ 177

Query: 181 EEAAQAYDRAAIEYRGLNAVTNFDLSKYIKWLRPNNNQNN-------PKP-----SNPQQ 228
           EEAA AYD AAIEYRGLNAVTNFDLS+YIKWL+PN N  +       P P     ++   
Sbjct: 178 EEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLKPNQNNTDNNNGLDLPNPIIGTDNSTHP 237

Query: 229 NPNSDDTSPIPKLNQETSSGSETSAPPPRSGATAGGSGSASSALGLLLQSSKYKEMVEKT 288
           NPN +  +   ++NQ+T   SET+   PR         + SSALGLLLQSSK+KEM+E T
Sbjct: 238 NPNQELGTTFLQINQQTYQPSETTLTQPRPAT------NPSSALGLLLQSSKFKEMMEMT 291

Query: 289 S-TDCLST-SSEPGSSHRIFPDDIQTMFFDCQDSSSY-TEGDDVLLGDLNPYIFPTFYSE 345
           + TDC  T  S    +   F +D+QT +FDC DSS+Y  +GDD++ GDLN ++ P F  +
Sbjct: 292 AVTDCPPTPPSGLDPTPCSFLEDVQT-YFDCLDSSNYGDQGDDMIFGDLNSFVPPMFQCD 350

Query: 346 LD 347
            +
Sbjct: 351 FE 352

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	348
TAIR|locus:2200477	345	ADAP "ARIA-interacting double	0.505	0.510	0.829	2.7e-92
TAIR|locus:2017829	313	WRI4 "WRINKLED 4" [Arabidopsis	0.502	0.559	0.817	5e-89
TAIR|locus:2173009	558	AIL5 "AINTEGUMENTA-like 5" [Ar	0.485	0.302	0.686	2e-63
TAIR|locus:2178915	584	BBM "BABY BOOM" [Arabidopsis t	0.485	0.289	0.680	3e-62
TAIR|locus:2008216	568	PLT2 "PLETHORA 2" [Arabidopsis	0.485	0.297	0.656	3e-62
TAIR|locus:2030265	415	AT1G72570 [Arabidopsis thalian	0.497	0.416	0.658	7.9e-62
TAIR|locus:2091891	574	PLT1 "PLETHORA 1" [Arabidopsis	0.497	0.301	0.635	1.6e-61
TAIR|locus:2155680	498	AIL7 "AINTEGUMENTA-like 7" [Ar	0.485	0.339	0.662	1.2e-60
TAIR|locus:2137559	555	ANT "AINTEGUMENTA" [Arabidopsi	0.497	0.311	0.624	1.1e-57
TAIR|locus:2005493	432	AP2 "APETALA 2" [Arabidopsis t	0.468	0.377	0.477	1.1e-37

TAIR|locus:2200477 ADAP "ARIA-interacting double AP2 domain protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 807 (289.1 bits), Expect = 2.7e-92, Sum P(2) = 2.7e-92
 Identities = 146/176 (82%), Positives = 157/176 (89%)

Query:    35 RDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDNEEXXXXXXX 94
             RD+PPQRSS++RGVTRHRWTGRYEAHLWDKN WNE+Q KKGRQVYLGAYD E+       
Sbjct:    49 RDAPPQRSSVHRGVTRHRWTGRYEAHLWDKNSWNETQTKKGRQVYLGAYDEEDAAARAYD 108

Query:    95 XXXLKYWGHDTILNFPLSNYEEELVEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHH 154
                LKYWG DTILNFPL NYEE++ EME QSKEEYIGSLRRKSSGFSRGVSKYRGVA+HH
Sbjct:   109 LAALKYWGRDTILNFPLCNYEEDIKEMESQSKEEYIGSLRRKSSGFSRGVSKYRGVAKHH 168

Query:   155 HNGRWEARIGRVFGNKYLYLGTYATQEEAAQAYDRAAIEYRGLNAVTNFDLSKYIK 210
             HNGRWEARIGRVFGNKYLYLGTYATQEEAA AYD AAIEYRGLNAVTNFD+S+Y+K
Sbjct:   169 HNGRWEARIGRVFGNKYLYLGTYATQEEAAIAYDIAAIEYRGLNAVTNFDISRYLK 224

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0010187 "negative regulation of seed germination" evidence=IMP

GO:0040008 "regulation of growth" evidence=IMP

GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=IPI

GO:0045723 "positive regulation of fatty acid biosynthetic process" evidence=IGI;IMP

GO:1901959 "positive regulation of cutin biosynthetic process" evidence=IGI

GO:0009887 "organ morphogenesis" evidence=ISS

GO:0003677 "DNA binding" evidence=TAS

TAIR|locus:2017829 WRI4 "WRINKLED 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 783 (280.7 bits), Expect = 5.0e-89, Sum P(2) = 5.0e-89
 Identities = 143/175 (81%), Positives = 155/175 (88%)

Query:    35 RDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDNEEXXXXXXX 94
             R++P QRSS YRGVTRHRWTGRYEAHLWDKN WN++Q KKGRQVYLGAYD EE       
Sbjct:    43 RNAPLQRSSPYRGVTRHRWTGRYEAHLWDKNSWNDTQTKKGRQVYLGAYDEEEAAARAYD 102

Query:    95 XXXLKYWGHDTILNFPLSNYEEELVEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHH 154
                LKYWG DT+LNFPL +Y+E++ EMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHH
Sbjct:   103 LAALKYWGRDTLLNFPLPSYDEDVKEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHH 162

Query:   155 HNGRWEARIGRVFGNKYLYLGTYATQEEAAQAYDRAAIEYRGLNAVTNFDLSKYI 209
             HNGRWEARIGRVFGNKYLYLGTYATQEEAA AYD AAIEYRGLNAVTNFD+S+Y+
Sbjct:   163 HNGRWEARIGRVFGNKYLYLGTYATQEEAAIAYDIAAIEYRGLNAVTNFDVSRYL 217

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=IPI

GO:0045723 "positive regulation of fatty acid biosynthetic process" evidence=IGI;IMP

GO:1901959 "positive regulation of cutin biosynthetic process" evidence=IGI

GO:0003677 "DNA binding" evidence=ISS

GO:0009887 "organ morphogenesis" evidence=ISS

TAIR|locus:2173009 AIL5 "AINTEGUMENTA-like 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
 Identities = 116/169 (68%), Positives = 137/169 (81%)

Query:    40 QRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDNEEXXXXXXXXXXLK 99
             QR+SIYRGVTRHRWTGRYEAHLWD +C  E Q++KGRQVYLG YD E+          LK
Sbjct:   199 QRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEDKAARAYDLAALK 258

Query:   100 YWGHDTILNFPLSNYEEELVEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRW 159
             YWG  T  NFP+SNYE EL EM+  +++E++ SLRRKSSGFSRG S YRGV RHH +GRW
Sbjct:   259 YWGPTTTTNFPISNYESELEEMKHMTRQEFVASLRRKSSGFSRGASMYRGVTRHHQHGRW 318

Query:   160 EARIGRVFGNKYLYLGTYATQEEAAQAYDRAAIEYRGLNAVTNFDLSKY 208
             +ARIGRV GNK LYLGT++TQEEAA+AYD AAI++RGLNAVTNFD+S+Y
Sbjct:   319 QARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDISRY 367

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;TAS

GO:0009791 "post-embryonic development" evidence=IMP

GO:0009845 "seed germination" evidence=RCA;IMP

GO:0040019 "positive regulation of embryonic development" evidence=IMP

GO:0048364 "root development" evidence=IMP

GO:0060771 "phyllotactic patterning" evidence=IGI

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=ISS;IMP

TAIR|locus:2178915 BBM "BABY BOOM" [Arabidopsis thaliana (taxid:3702)]

 Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
 Identities = 115/169 (68%), Positives = 135/169 (79%)

Query:    40 QRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDNEEXXXXXXXXXXLK 99
             QR+SIYRGVTRHRWTGRYEAHLWD +C  E Q +KGRQVYLG YD EE          LK
Sbjct:   206 QRTSIYRGVTRHRWTGRYEAHLWDNSCKREGQTRKGRQVYLGGYDKEEKAARAYDLAALK 265

Query:   100 YWGHDTILNFPLSNYEEELVEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRW 159
             YWG  T  NFPLS YE+E+ EM+  +++EY+ SLRRKSSGFSRG S YRGV RHH +GRW
Sbjct:   266 YWGTTTTTNFPLSEYEKEVEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRW 325

Query:   160 EARIGRVFGNKYLYLGTYATQEEAAQAYDRAAIEYRGLNAVTNFDLSKY 208
             +ARIGRV GNK LYLGT+ TQEEAA+AYD AAI++RGL+AVTNFD+++Y
Sbjct:   326 QARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGLSAVTNFDMNRY 374

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;TAS

GO:0009887 "organ morphogenesis" evidence=ISS;IMP

TAIR|locus:2008216 PLT2 "PLETHORA 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
 Identities = 111/169 (65%), Positives = 138/169 (81%)

Query:    40 QRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDNEEXXXXXXXXXXLK 99
             QR+SIYRGVTRHRWTGRYEAHLWD +C  E Q++KGRQVYLG YD EE          LK
Sbjct:   186 QRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALK 245

Query:   100 YWGHDTILNFPLSNYEEELVEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRW 159
             YWG  T  NFP++NYE+E+ EM+  +++E++ S+RRKSSGFSRG S YRGV RHH +GRW
Sbjct:   246 YWGPSTTTNFPITNYEKEVEEMKNMTRQEFVASIRRKSSGFSRGASMYRGVTRHHQHGRW 305

Query:   160 EARIGRVFGNKYLYLGTYATQEEAAQAYDRAAIEYRGLNAVTNFDLSKY 208
             +ARIGRV GNK LYLGT++T+EEAA+AYD AAI++RGLNAVTNF++++Y
Sbjct:   306 QARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFEINRY 354

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;NAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0007389 "pattern specification process" evidence=IMP

GO:0019827 "stem cell maintenance" evidence=IMP

GO:0048364 "root development" evidence=IGI;IMP

GO:0051302 "regulation of cell division" evidence=IMP

TAIR|locus:2030265 AT1G72570 [Arabidopsis thaliana (taxid:3702)]

 Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
 Identities = 114/173 (65%), Positives = 136/173 (78%)

Query:    36 DSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDNEEXXXXXXXX 95
             DS  QR+S YRGVTRHRWTGRYEAHLWD +C  E Q ++GRQVYLG YD EE        
Sbjct:   215 DSYGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRRGRQVYLGGYDEEEKAARAYDL 274

Query:    96 XXLKYWGHDTILNFPLSNYEEELVEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHH 155
               LKYWG  T LNFPLSNYE+E+ E+   +++E++  LRR SSGFSRG S YRGV RHH 
Sbjct:   275 AALKYWGPTTHLNFPLSNYEKEIEELNNMNRQEFVAMLRRNSSGFSRGASVYRGVTRHHQ 334

Query:   156 NGRWEARIGRVFGNKYLYLGTYATQEEAAQAYDRAAIEYRGLNAVTNFDLSKY 208
             +GRW+ARIGRV GNK LYLGT++TQEEAA+AYD AAI++RGLNAVTNFD+++Y
Sbjct:   335 HGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDINRY 387

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=ISS

TAIR|locus:2091891 PLT1 "PLETHORA 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
 Identities = 110/173 (63%), Positives = 140/173 (80%)

Query:    36 DSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDNEEXXXXXXXX 95
             D+  QR+SIYRGVTRHRWTGRYEAHLWD +C  E Q++KGRQVYLG YD E+        
Sbjct:   173 DTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEDKAARSYDL 232

Query:    96 XXLKYWGHDTILNFPLSNYEEELVEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHH 155
               LKYWG  T  NFP++NYE+E+ EM+  +++E++ ++RRKSSGFSRG S YRGV RHH 
Sbjct:   233 AALKYWGPSTTTNFPITNYEKEVEEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQ 292

Query:   156 NGRWEARIGRVFGNKYLYLGTYATQEEAAQAYDRAAIEYRGLNAVTNFDLSKY 208
             +GRW+ARIGRV GNK LYLGT++T+EEAA+AYD AAI++RGLNAVTNF++++Y
Sbjct:   293 HGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFEINRY 345

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0007389 "pattern specification process" evidence=IMP

GO:0019827 "stem cell maintenance" evidence=IMP

GO:0048364 "root development" evidence=IGI;IMP

GO:0051302 "regulation of cell division" evidence=IMP

TAIR|locus:2155680 AIL7 "AINTEGUMENTA-like 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
 Identities = 112/169 (66%), Positives = 133/169 (78%)

Query:    40 QRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDNEEXXXXXXXXXXLK 99
             QR+SIYRGVTRHRWTGRYEAHLWD +C  E Q +KGRQVYLG YD E+          LK
Sbjct:   227 QRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEDRAARAYDLAALK 286

Query:   100 YWGHDTILNFPLSNYEEELVEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRW 159
             YWG     NFP+S+Y +EL EM   +K+E+I SLRRKSSGFSRG S YRGV RHH  GRW
Sbjct:   287 YWGSTATTNFPVSSYSKELEEMNHMTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRW 346

Query:   160 EARIGRVFGNKYLYLGTYATQEEAAQAYDRAAIEYRGLNAVTNFDLSKY 208
             +ARIGRV GNK LYLGT+AT+EEAA+AYD AAI++RG+NAVTNF++++Y
Sbjct:   347 QARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGINAVTNFEMNRY 395

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0060771 "phyllotactic patterning" evidence=IGI

GO:0010492 "maintenance of shoot apical meristem identity" evidence=IGI

GO:0009887 "organ morphogenesis" evidence=ISS

TAIR|locus:2137559 ANT "AINTEGUMENTA" [Arabidopsis thaliana (taxid:3702)]

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 108/173 (62%), Positives = 131/173 (75%)

Query:    36 DSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDNEEXXXXXXXX 95
             D+  QR+S YRGVTRHRWTGRYEAHLWD +   E  ++KGRQVYLG YD EE        
Sbjct:   275 DTFGQRTSQYRGVTRHRWTGRYEAHLWDNSFKKEGHSRKGRQVYLGGYDMEEKAARAYDL 334

Query:    96 XXLKYWGHDTILNFPLSNYEEELVEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHH 155
               LKYWG  T  NF   NY++E+ +M+  +++EY+  LRRKSSGFSRG S YRGV RHH 
Sbjct:   335 AALKYWGPSTHTNFSAENYQKEIEDMKNMTRQEYVAHLRRKSSGFSRGASIYRGVTRHHQ 394

Query:   156 NGRWEARIGRVFGNKYLYLGTYATQEEAAQAYDRAAIEYRGLNAVTNFDLSKY 208
             +GRW+ARIGRV GNK LYLGT+ TQEEAA+AYD AAI++RG NAVTNFD+++Y
Sbjct:   395 HGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDVAAIKFRGTNAVTNFDITRY 447

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;TAS

GO:0042127 "regulation of cell proliferation" evidence=RCA;IMP

GO:0010492 "maintenance of shoot apical meristem identity" evidence=IGI

GO:0006306 "DNA methylation" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=IMP;RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

GO:0007276 "gamete generation" evidence=IMP

TAIR|locus:2005493 AP2 "APETALA 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 83/174 (47%), Positives = 113/174 (64%)

Query:    35 RDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDNEEXXXXXXX 94
             R  P  RSS YRGVT +R TGR+E+H+WD  C        G+QVYLG +D          
Sbjct:   122 RRGPRSRSSQYRGVTFYRRTGRWESHIWD--C--------GKQVYLGGFDTAHAAARAYD 171

Query:    95 XXXLKYWGHDTILNFPLSNYEEELVEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHH 154
                +K+ G +  +NF + +Y+++L +M   +KEE++  LRR+S+GF RG SKYRGV  H 
Sbjct:   172 RAAIKFRGVEADINFNIDDYDDDLKQMTNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHK 231

Query:   155 HNGRWEARIGRVFGNKYLYLGTYATQEEAAQAYDRAAIEYRGLNAVTNFDLSKY 208
               GRWEAR+G+  G KY+YLG + T+ EAA+AYD+AAI+  G +AVTNFD S Y
Sbjct:   232 C-GRWEARMGQFLGKKYVYLGLFDTEVEAARAYDKAAIKCNGKDAVTNFDPSIY 284

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS;TAS

GO:0010093 "specification of floral organ identity" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0010073 "meristem maintenance" evidence=IMP

GO:0009888 "tissue development" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA;TAS

GO:0048481 "ovule development" evidence=IGI

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009908 "flower development" evidence=TAS

GO:0019953 "sexual reproduction" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94AN4	AP2L1_ARATH	No assigned EC number	0.6062	0.9454	0.9536	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	348
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	2e-24
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	6e-24
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	1e-22
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	3e-19
pfam00847	53	pfam00847, AP2, AP2 domain	8e-12
pfam00847	53	pfam00847, AP2, AP2 domain	5e-10

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score = 93.9 bits (234), Expect = 2e-24
 Identities = 32/63 (50%), Positives = 40/63 (63%), Gaps = 1/63 (1%)

Query: 146 KYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAQAYDRAAIEYRGLNAVTNFDL 205
           KYRGV R    G+W A I      K ++LGT+ T EEAA+AYDRAA ++RG +A  NF  
Sbjct: 1   KYRGV-RQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPN 59

Query: 206 SKY 208
           S Y
Sbjct: 60  SLY 62

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score = 92.7 bits (231), Expect = 6e-24
 Identities = 33/62 (53%), Positives = 42/62 (67%), Gaps = 1/62 (1%)

Query: 145 SKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAQAYDRAAIEYRGLNAVTNFD 204
           SKYRGV R    G+W A I    G + ++LGT+ T EEAA+AYDRAA++ RG +AV NF 
Sbjct: 1   SKYRGV-RQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFP 59

Query: 205 LS 206
            S
Sbjct: 60  DS 61

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score = 89.2 bits (222), Expect = 1e-22
 Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 9/73 (12%)

Query: 44  IYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDNEEAAARAYDLAALKYWGH 103
            YRGV +  W G++ A + D          KG++V+LG +D  E AARAYD AA K+ G 
Sbjct: 1   KYRGVRQRPW-GKWVAEIRD--------PSKGKRVWLGTFDTAEEAARAYDRAAFKFRGR 51

Query: 104 DTILNFPLSNYEE 116
              LNFP S Y+ 
Sbjct: 52  SARLNFPNSLYDS 64

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score = 80.0 bits (198), Expect = 3e-19
 Identities = 31/70 (44%), Positives = 40/70 (57%), Gaps = 9/70 (12%)

Query: 43  SIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDNEEAAARAYDLAALKYWG 102
           S YRGV +  W G++ A + D           GR+++LG +D  E AARAYD AALK  G
Sbjct: 1   SKYRGVRQRPW-GKWVAEIRDP--------SGGRRIWLGTFDTAEEAARAYDRAALKLRG 51

Query: 103 HDTILNFPLS 112
              +LNFP S
Sbjct: 52  SSAVLNFPDS 61

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 59.2 bits (144), Expect = 8e-12
 Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 145 SKYRGVARHHHNGRWEARIGRV--FGNKYLYLGTYATQEEAAQAYDRAAIEYRG 196
           S Y+GV      GRW A I        K   LGT+ T EEAA+A   A ++ RG
Sbjct: 1   SGYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 54.2 bits (131), Expect = 5e-10
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 7/60 (11%)

Query: 43  SIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDNEEAAARAYDLAALKYWG 102
           S Y+GV   +  GR+ A + D         KK ++  LG +  EE AARA   A LK  G
Sbjct: 1   SGYKGVRYDKRWGRWVAEIRDPG------EKKKKRFSLGTFGTEE-AARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	348
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.76
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.75
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.71
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.7
PHA00280	121	putative NHN endonuclease	99.5
PHA00280	121	putative NHN endonuclease	99.4
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.09
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.0

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.76  E-value=1.6e-18  Score=129.73  Aligned_cols=61  Identities=51%  Similarity=0.903  Sum_probs=56.3

Q ss_pred             CCeEEeEEcCCCCeeEEEEecCcccccccccCCcEEecccCCCHHHHHHHHHHHHHhhcCCccccCCCCc
Q 018990           43 SIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDNEEAAARAYDLAALKYWGHDTILNFPLS  112 (348)
Q Consensus        43 S~yrGV~~~~~~grw~A~I~~~~~w~~~~~~~gk~i~LG~f~teeeAA~AYD~aa~~~~G~~a~~NFp~~  112 (348)
                      |+|+||+++++ |+|+|+|+.+        ..|++++||+|+|+||||+|||.++++++|..+.+|||.+
T Consensus         1 s~~~GV~~~~~-gkw~A~I~~~--------~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPW-GKWVAEIRDP--------SGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCC-CcEEEEEEeC--------CCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            68999999998 9999999754        3489999999999999999999999999999999999963

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.75  E-value=2.2e-18  Score=130.37  Aligned_cols=63  Identities=49%  Similarity=0.913  Sum_probs=58.5

Q ss_pred             CeEEeEEcCCCCeeEEEEecCcccccccccCCcEEecccCCCHHHHHHHHHHHHHhhcCCccccCCCCcchh
Q 018990           44 IYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDNEEAAARAYDLAALKYWGHDTILNFPLSNYE  115 (348)
Q Consensus        44 ~yrGV~~~~~~grw~A~I~~~~~w~~~~~~~gk~i~LG~f~teeeAA~AYD~aa~~~~G~~a~~NFp~~~y~  115 (348)
                      +|+||+++++ |||+|+|+.+        .+|++++||+|+|+||||+|||.++++++|..+.+|||.+.|+
T Consensus         1 ~~kGV~~~~~-gkw~A~I~~~--------~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQRPW-GKWVAEIRDP--------SKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEeCCC-CeEEEEEEec--------CCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            5999999887 9999999864        4799999999999999999999999999999999999998875

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.71  E-value=1.2e-17  Score=126.38  Aligned_cols=63  Identities=49%  Similarity=0.727  Sum_probs=58.2

Q ss_pred             ccccccccccCceeeeeeccccCCeEEeecCCCCHHHHHHHHHHHHHHhcCCccccCCCchhhh
Q 018990          146 KYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAQAYDRAAIEYRGLNAVTNFDLSKYI  209 (348)
Q Consensus       146 ~yrGV~~~~~~gkW~A~I~~~~~~k~~~LGtf~t~eeAA~AYD~aa~~~~G~~a~~NF~~~~y~  209 (348)
                      +|+||++ +++|+|+|+|+.+.+++.++||+|+|+||||.|||.++++++|..+.+|||++.|.
T Consensus         1 ~~kGV~~-~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQ-RPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEe-CCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            5899986 56799999999666899999999999999999999999999999999999998874

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.70  E-value=1.7e-17  Score=124.14  Aligned_cols=61  Identities=52%  Similarity=0.803  Sum_probs=55.0

Q ss_pred             cccccccccccCceeeeeeccccCCeEEeecCCCCHHHHHHHHHHHHHHhcCCccccCCCch
Q 018990          145 SKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAQAYDRAAIEYRGLNAVTNFDLS  206 (348)
Q Consensus       145 S~yrGV~~~~~~gkW~A~I~~~~~~k~~~LGtf~t~eeAA~AYD~aa~~~~G~~a~~NF~~~  206 (348)
                      |+|+||++++ +|+|+|+|+....+++++||+|+|+||||.|||.++++++|..+.+|||++
T Consensus         1 s~~~GV~~~~-~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRP-WGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECC-CCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            6899998665 599999999544589999999999999999999999999999999999863

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>PHA00280 putative NHN endonuclease

Probab=99.50  E-value=3.3e-14  Score=120.43  Aligned_cols=78  Identities=14%  Similarity=0.134  Sum_probs=67.7

Q ss_pred             CCCccccccccccCCCCCCCCCCCCCCeEEeEEcCCCCeeEEEEecCcccccccccCCcEEecccCCCHHHHHHHHHHHH
Q 018990           18 NNNTVTTKTKRTRKSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDNEEAAARAYDLAA   97 (348)
Q Consensus        18 ~~~~~~~k~~~~r~~~~r~~~~~~sS~yrGV~~~~~~grw~A~I~~~~~w~~~~~~~gk~i~LG~f~teeeAA~AYD~aa   97 (348)
                      +.-.+++-..+......+...+.++|+|+||+|++..|||+|+|          .++||+++||.|+++|+|+.||+ ++
T Consensus        42 nri~NLr~~T~~eN~~N~~~~~~N~SG~kGV~~~k~~~kw~A~I----------~~~gK~~~lG~f~~~e~A~~a~~-~~  110 (121)
T PHA00280         42 DALDNLRLALPKENSWNMKTPKSNTSGLKGLSWSKEREMWRGTV----------TAEGKQHNFRSRDLLEVVAWIYR-TR  110 (121)
T ss_pred             CcHHHhhhcCHHHHhcccCCCCCCCCCCCeeEEecCCCeEEEEE----------EECCEEEEcCCCCCHHHHHHHHH-HH
Confidence            33446677777777777777888999999999999999999999          48899999999999999999997 78


Q ss_pred             HhhcCCccc
Q 018990           98 LKYWGHDTI  106 (348)
Q Consensus        98 ~~~~G~~a~  106 (348)
                      .+++|.++.
T Consensus       111 ~~lhGeFa~  119 (121)
T PHA00280        111 RELHGQFAR  119 (121)
T ss_pred             HHHhhcccc
Confidence            899998774

>PHA00280 putative NHN endonuclease

Probab=99.40  E-value=8.4e-13  Score=111.93  Aligned_cols=104  Identities=13%  Similarity=0.066  Sum_probs=79.0

Q ss_pred             HHHHHHHHHhhcCCccc---cCCCC-cchhHHHHHhhccchhhhhcccccccCCccCCccccccccccccCceeeeeecc
Q 018990           90 ARAYDLAALKYWGHDTI---LNFPL-SNYEEELVEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGR  165 (348)
Q Consensus        90 A~AYD~aa~~~~G~~a~---~NFp~-~~y~~el~~l~~~s~eE~i~sLRr~s~g~~~~~S~yrGV~~~~~~gkW~A~I~~  165 (348)
                      -+++-.+...++|+-..   +.+.. ...+..+..|..++..+.....+..    ++++|+|+||+|++..|||+|+|+ 
T Consensus        12 ~~~Hrlvw~~~~G~~P~g~~VdHidg~~~dnri~NLr~~T~~eN~~N~~~~----~~N~SG~kGV~~~k~~~kw~A~I~-   86 (121)
T PHA00280         12 PRRHIQVWEAANGPIPKGYYIDHIDGNPLNDALDNLRLALPKENSWNMKTP----KSNTSGLKGLSWSKEREMWRGTVT-   86 (121)
T ss_pred             hhHhHhhhHHHHCCCCCCCEEEcCCCCCCCCcHHHhhhcCHHHHhcccCCC----CCCCCCCCeeEEecCCCeEEEEEE-
Confidence            34566677777886431   22211 1223456777777877776665433    477899999999999999999998 


Q ss_pred             ccCCeEEeecCCCCHHHHHHHHHHHHHHhcCCccc
Q 018990          166 VFGNKYLYLGTYATQEEAAQAYDRAAIEYRGLNAV  200 (348)
Q Consensus       166 ~~~~k~~~LGtf~t~eeAA~AYD~aa~~~~G~~a~  200 (348)
                       .+||+++||.|+++|+|+.||+ ++.+|+|.+|.
T Consensus        87 -~~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         87 -AEGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             -ECCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence             8999999999999999999997 67899998764

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.09  E-value=1.9e-10  Score=84.13  Aligned_cols=56  Identities=30%  Similarity=0.390  Sum_probs=46.9

Q ss_pred             CCeEEeEEcCCCCeeEEEEecCcccccccccCCcEEecccCCCHHHHHHHHHHHHHhhcCC
Q 018990           43 SIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDNEEAAARAYDLAALKYWGH  103 (348)
Q Consensus        43 S~yrGV~~~~~~grw~A~I~~~~~w~~~~~~~gk~i~LG~f~teeeAA~AYD~aa~~~~G~  103 (348)
                      |+|+||+|++..++|+|+|++..   .. . .+|.++||.|+++++|++|++.++++++|.
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~---~~-g-~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWS---EN-G-KRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECC---CT-T-EEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcc---cC-c-ccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            68999999999999999997631   10 0 139999999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.00  E-value=6.7e-10  Score=81.24  Aligned_cols=53  Identities=34%  Similarity=0.499  Sum_probs=46.5

Q ss_pred             cccccccccccCceeeeeecccc-C--CeEEeecCCCCHHHHHHHHHHHHHHhcCC
Q 018990          145 SKYRGVARHHHNGRWEARIGRVF-G--NKYLYLGTYATQEEAAQAYDRAAIEYRGL  197 (348)
Q Consensus       145 S~yrGV~~~~~~gkW~A~I~~~~-~--~k~~~LGtf~t~eeAA~AYD~aa~~~~G~  197 (348)
                      |+|+||++++..++|+|+|++.. +  +++++||.|++++||++|++.++++++|.
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            68999999999999999998532 1  48999999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	348
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		6e-04
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		8e-04

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 147 YRGVARHHHNGRWEARIGRVFGN-KYLYLGTYATQEEAAQAYDRAAIEYRGLNAVTNFDL 205
           YRGV R    G++ A I     N   ++LGT+ T E+AA AYDRAA   RG  A+ NF L
Sbjct: 3   YRGV-RQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 61

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 147 YRGVARHHHNGRWEARIGRVFGN-KYLYLGTYATQEEAAQAYDRAAIEYRGLNAVTNFDL 205
           YRGV R    G++ A I     N   ++LGT+ T E+AA AYDRAA   RG  A+ NF L
Sbjct: 6   YRGV-RQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 64

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	348
1gcc_A	63	Ethylene responsive element binding factor 1; tran	1e-14
1gcc_A	63	Ethylene responsive element binding factor 1; tran	1e-13

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score = 66.6 bits (163), Expect = 1e-14
 Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 8/67 (11%)

Query: 45  YRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDNEEAAARAYDLAALKYWGHD 104
           YRGV +  W G++ A + D         K G +V+LG ++  E AA AYD AA +  G  
Sbjct: 3   YRGVRQRPW-GKFAAEIRDPA-------KNGARVWLGTFETAEDAALAYDRAAFRMRGSR 54

Query: 105 TILNFPL 111
            +LNFPL
Sbjct: 55  ALLNFPL 61

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score = 63.9 bits (156), Expect = 1e-13
 Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 146 KYRGVARHHHNGRWEARIGRVFGNKY-LYLGTYATQEEAAQAYDRAAIEYRGLNAVTNF 203
            YRGV +    G++ A I     N   ++LGT+ T E+AA AYDRAA   RG  A+ NF
Sbjct: 2   HYRGVRQRPW-GKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	348
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.84
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.82
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	91.2
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	82.75
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	81.57

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.84  E-value=1.6e-21  Score=146.39  Aligned_cols=61  Identities=44%  Similarity=0.864  Sum_probs=56.4

Q ss_pred             CeEEeEEcCCCCeeEEEEecCcccccccccCCcEEecccCCCHHHHHHHHHHHHHhhcCCccccCCCCc
Q 018990           44 IYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDNEEAAARAYDLAALKYWGHDTILNFPLS  112 (348)
Q Consensus        44 ~yrGV~~~~~~grw~A~I~~~~~w~~~~~~~gk~i~LG~f~teeeAA~AYD~aa~~~~G~~a~~NFp~~  112 (348)
                      +||||++++| |||+|+|+++       ..+|+++|||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus         2 ~yrGV~~r~~-gkw~A~I~~~-------~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQRPW-GKFAAEIRDP-------AKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETT-TEEEEEEEET-------TTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEeeCCC-CcEEEEEccc-------cCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            5999999987 9999999876       25689999999999999999999999999999999999964

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.82  E-value=9.4e-21  Score=142.14  Aligned_cols=60  Identities=43%  Similarity=0.670  Sum_probs=54.9

Q ss_pred             ccccccccccCceeeeeecccc-CCeEEeecCCCCHHHHHHHHHHHHHHhcCCccccCCCch
Q 018990          146 KYRGVARHHHNGRWEARIGRVF-GNKYLYLGTYATQEEAAQAYDRAAIEYRGLNAVTNFDLS  206 (348)
Q Consensus       146 ~yrGV~~~~~~gkW~A~I~~~~-~~k~~~LGtf~t~eeAA~AYD~aa~~~~G~~a~~NF~~~  206 (348)
                      +|+||++ +++|||+|+|+++. +++++|||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus         2 ~yrGV~~-r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQ-RPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEE-ETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEee-CCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            6999965 57999999999765 479999999999999999999999999999999999974

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=91.20  E-value=0.14  Score=39.00  Aligned_cols=23  Identities=26%  Similarity=0.364  Sum_probs=20.1

Q ss_pred             CCCCCeEEeEEcCCCCeeEEEEe
Q 018990           40 QRSSIYRGVTRHRWTGRYEAHLW   62 (348)
Q Consensus        40 ~~sS~yrGV~~~~~~grw~A~I~   62 (348)
                      ..+|+|.||+|+++.+.|.|+-.
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~   25 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFY   25 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEE
T ss_pred             CCCCCCCcEEeecCCceEEEEEe
Confidence            45899999999999999999864

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=82.75  E-value=0.7  Score=35.14  Aligned_cols=27  Identities=26%  Similarity=0.228  Sum_probs=22.0

Q ss_pred             CccccccccccccCceeeeeeccccCCeE
Q 018990          143 GVSKYRGVARHHHNGRWEARIGRVFGNKY  171 (348)
Q Consensus       143 ~~S~yrGV~~~~~~gkW~A~I~~~~~~k~  171 (348)
                      ..|+|.||+|+++.+.|.|.-.  .+|++
T Consensus         4 ~~Sg~pGVsw~kR~~~WlA~W~--e~g~r   30 (77)
T 3igm_B            4 MSSGYPGVSWNKRMCAWLAFFY--DGASR   30 (77)
T ss_dssp             CCSSSTTEEEETTTTEEEEEEE--ETTEE
T ss_pred             CCCCCCcEEeecCCceEEEEEe--cCCeE
Confidence            4689999999999999999986  34543

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=81.57  E-value=0.18  Score=43.80  Aligned_cols=88  Identities=7%  Similarity=-0.001  Sum_probs=52.7

Q ss_pred             HHHHHHHhhcCCcc---ccCCCCcc-hhHHHHHhhccchhhhhcccccccCCccCCccccccccccccCceeeeeecccc
Q 018990           92 AYDLAALKYWGHDT---ILNFPLSN-YEEELVEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVF  167 (348)
Q Consensus        92 AYD~aa~~~~G~~a---~~NFp~~~-y~~el~~l~~~s~eE~i~sLRr~s~g~~~~~S~yrGV~~~~~~gkW~A~I~~~~  167 (348)
                      ++-+.+..|.|...   ..++-..+ .+..+..|+-++..|......+...   .  ..++||.+ ...++|.+.|.  .
T Consensus        55 vHrlVa~~f~~~~~~~~~v~H~dg~k~nn~~~NL~~~t~~eN~~~~~~~~~---~--~~~~g~~~-~~~~k~~~vi~--~  126 (174)
T 1u3e_M           55 VHRLVAIHFCEGYEEGLVVDHKDGNKDNNLSTNLRWVTQKINVENQMSRGT---L--NVSKAQQI-AKIKNQKPIIV--I  126 (174)
T ss_dssp             HHHHHHHHHCTTCCTTCEEEETTSCTTCCCGGGEEEECHHHHHHHHHHHTC---C--CCHHHHHH-HHHHTCCCEEE--E
T ss_pred             eHHHHHHHhcCCCCCCCEEEcCCCCCCCCCHHHcEECCHHHHhhcccccCc---c--cceeeeee-ccCCCCceEEE--E
Confidence            34455666666532   22332211 2234666777777776554332220   1  12468866 55678999986  4


Q ss_pred             CCeEEeecCCCCHHHHHHHHH
Q 018990          168 GNKYLYLGTYATQEEAAQAYD  188 (348)
Q Consensus       168 ~~k~~~LGtf~t~eeAA~AYD  188 (348)
                      . +..+||.|+|.+|||++|.
T Consensus       127 ~-~~~~~~~f~s~~eAa~~~G  146 (174)
T 1u3e_M          127 S-PDGIEKEYPSTKCACEELG  146 (174)
T ss_dssp             C-TTSCEEEESCHHHHHHHHT
T ss_pred             c-CCceEEeeCCHHHHHHHHC
Confidence            4 5678999999999999964

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	348
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	2e-22
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	1e-20

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 87.1 bits (216), Expect = 2e-22
 Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 8/67 (11%)

Query: 45  YRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDNEEAAARAYDLAALKYWGHD 104
           YRGV +  W G++ A + D         K G +V+LG ++  E AA AYD AA +  G  
Sbjct: 3   YRGVRQRPW-GKFAAEIRDPA-------KNGARVWLGTFETAEDAALAYDRAAFRMRGSR 54

Query: 105 TILNFPL 111
            +LNFPL
Sbjct: 55  ALLNFPL 61

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 82.1 bits (203), Expect = 1e-20
 Identities = 28/61 (45%), Positives = 35/61 (57%), Gaps = 2/61 (3%)

Query: 146 KYRGVARHHHNGRWEARIGRVFGN-KYLYLGTYATQEEAAQAYDRAAIEYRGLNAVTNFD 204
            YRGV R    G++ A I     N   ++LGT+ T E+AA AYDRAA   RG  A+ NF 
Sbjct: 2   HYRGV-RQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Query: 205 L 205
           L
Sbjct: 61  L 61

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	348
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.86
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.83

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.86  E-value=1.5e-22  Score=149.89  Aligned_cols=61  Identities=44%  Similarity=0.864  Sum_probs=56.5

Q ss_pred             CeEEeEEcCCCCeeEEEEecCcccccccccCCcEEecccCCCHHHHHHHHHHHHHhhcCCccccCCCCc
Q 018990           44 IYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDNEEAAARAYDLAALKYWGHDTILNFPLS  112 (348)
Q Consensus        44 ~yrGV~~~~~~grw~A~I~~~~~w~~~~~~~gk~i~LG~f~teeeAA~AYD~aa~~~~G~~a~~NFp~~  112 (348)
                      +||||+++++ |||+|+|+++       ..+++++|||+|+|+||||+|||.|+++++|+++.+|||+.
T Consensus         2 ~yrGVr~r~~-gkw~A~Ir~~-------~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQRPW-GKFAAEIRDP-------AKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETT-TEEEEEEEET-------TTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeECCC-CCEEEEEecC-------CCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            4999999876 9999999987       37889999999999999999999999999999999999963

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.83  E-value=1.2e-21  Score=145.01  Aligned_cols=60  Identities=43%  Similarity=0.665  Sum_probs=54.2

Q ss_pred             ccccccccccCceeeeeeccc-cCCeEEeecCCCCHHHHHHHHHHHHHHhcCCccccCCCch
Q 018990          146 KYRGVARHHHNGRWEARIGRV-FGNKYLYLGTYATQEEAAQAYDRAAIEYRGLNAVTNFDLS  206 (348)
Q Consensus       146 ~yrGV~~~~~~gkW~A~I~~~-~~~k~~~LGtf~t~eeAA~AYD~aa~~~~G~~a~~NF~~~  206 (348)
                      +||||++ +.+|||+|+|+++ .+++++|||+|+|+||||+|||.|+++++|..+.+|||+.
T Consensus         2 ~yrGVr~-r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQ-RPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEE-ETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeE-CCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            5999964 5689999999865 3668999999999999999999999999999999999985