Citrus Sinensis ID: 018993

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------35
Protein Sequence
MDSASSATAAAAIVNERESMVDPFLVEALQNPRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRKTAESKYPAVRLSEIPAKQSEESDKLEKIKIAIRRRPNAGCVNGANETGTKRSPVRSVEERKEEYDRARARIFSGPSSPNSEDTLTQVSTDMKNIGFNRDEREIVRNSITDAEKIISIRDGAGLSRVAIFRDREKDRTDPDYDRSYERSLPTNQGFSLPPFNMQKVQLPFMQYDTGFPQFSQIPRTQASLSFRPPSSPVMSPYCAVGPNQTSVEAAYMQWPSAAMMYAHSYEQFRQAAFQVFFGYFLKL
Secondary Structure (PSIPRED)
ccccccHHHHHHcccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHcccEEEEccccccccccEEEEEEccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHcccEEEEcccccccccEEEEEcccccccccccHccccccccccccccccEEEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccEEEEEc
Coil and Loop (DISEMBL)
MDSASSATAAAAIVNERESMVDPFLVEALQNPRHRLTILRMELDIQRflqnpdqqhfefqhfpTSYLRLAAHRVSQHYGLVTMVQEngieglgnRILVRKTAeskypavrlseipakqseesdKLEKIKIAIrrrpnagcvnganetgtkrspvrsveERKEEYDRARARifsgpsspnsedtLTQVSTDMknigfnrdeREIVRNSITDAEKIISIrdgaglsrvaifrdrekdrtdpdydrsyerslptnqgfslppfnmqkvqlpfmqydtgfpqfsqiprtqaslsfrppsspvmspycavgpnqtsVEAAYMQWPSAAMMYAHSYEQFRQAAFQVFFGYFLKL
Flexible Loop (DISEMBL)
MDSASSATAAAAivneresmvDPFLVEALQNPRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRKTAeskypavrlseipakqseesdkLEKIKIairrrpnagcvnganetgtkrspvrsveerkeEYDRArarifsgpsspnsedtltQVSTdmknigfnrdereivrnsitdaekiisirdgaglsrvaifrdrekdrtdpdydrsyerslptnqgfslppFNMQKVQLPFMQYDTGFPQFSQIPRTQASLSFRPPSSPVMSPYCAVGPNQTSVEAAYMQWPSAAMMYAHSYEQFRQAAFQVFFGYFLKL
Low Complexity Region (SEG)
MDsassataaaaIVNERESMVDPFLVEALQNPRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRKTAESKYPAVRLSEIPAKQSEESDKLEKIKIAIRRRPNAGCVNGANETGTKRSPVRSVEERKEEYDRARARIFSGPSSPNSEDTLTQVSTDMKNIGFNRDEREIVRNSITDAEKIISIRDGAGLSRVAIFRDREKDRTDPDYDRSYERSLPTNQGFSLPPFNMQKVQLPFMQYDTGFPQFSQIPRTQASLSFRPPSSPVMSPYCAVGPNQTSVEAAYMQWPSAAMMYAHSYEQFRQAAFQVFFGYFLKL
Disordered region (IsUnstruct)
*******************MVDPFLVEALQNPRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRKTA****************************************************************************************************IVRNSITDAEKIISIRDGAGLSRVAIF*********************************QKVQLPFMQYDTGFP************************YCAVGPNQTSVEAAYMQWPSAAMMYAHSYEQFRQAAFQVFFGYFL**
Disordered Region (DISOPRED)
********************VDPFLVEALQNPRHRLTILRMELDIQRFLQNPDQ*******FPTSYLRLAAHRVSQHYGLVTMVQE***EGLGNRILVRKTAESKYPAVR***************************************************************************************************************************************************************************************************************************************FGYFLKL
Disordered Region (DISEMBL)
**********AAIVNERESMVDPFLVEALQNPRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRKTAESKYPAVRLSEIPAKQSEESDKLEKIKIAIRRRPNAGCVNGAN********************RARARIFSGPSSPNSEDTLTQVSTDMKNIGFNRDEREIVRNSITDAEKIISIRDGAGLSRVAIFRDREKDRTDPDYDRSYERSLPTNQGFSLPPFNMQKVQLPFMQYDTGFPQFSQIPRTQASLSFRPPSSPVMSPYCAVGPNQTSVEAAYMQWPSAAMMYAHSYEQFRQAAFQVFFGYFLKL
Disordered Region (DISPRO)
*****************ESMVDPFLVEALQNPRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRKTAESKYPAVRLSEIPAKQ***S*KLEKIK***R********************************RARARIFSG***********************************************************KDRTDPDYDRSYERSLPTNQGFSLPPFNMQKVQLPFMQYDTGFPQFSQIPRTQASLSFRPPSSPVMSPYCAVGPNQTSVEAAYMQWPSAAMMYAHSYEQFRQAAFQVFFGYFLKL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSASSATAAAAIVNERESMVDPFLVEALQNPRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRKTAESKYPAVRLSEIPAKQSEESDKLEKIKIAIRRRPNAGCVNGANETGTKRSPVRSVEERKEEYDRARARIFSGPSSPNSEDTLTQVSTDMKNIGFNRDEREIVRNSITDAEKIISIRDGAGLSRVAIFRDREKDRTDPDYDRSYERSLPTNQGFSLPPFNMQKVQLPFMQYDTGFPQFSQIPRTQASLSFRPPSSPVMSPYCAVGPNQTSVEAAYMQWPSAAMMYAHSYEQFRQAAFQVFFGYFLKL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	348	2.2.26 [Sep-21-2011]
A0JNC2	989	R3H domain-containing pro	yes	no	0.387	0.136	0.314	3e-11
Q9DCB4	807	cAMP-regulated phosphopro	yes	no	0.580	0.250	0.260	4e-11
Q80TM6	1044	R3H domain-containing pro	no	no	0.387	0.129	0.314	5e-11
Q15032	1099	R3H domain-containing pro	yes	no	0.485	0.153	0.306	6e-11
Q9UBL0	812	cAMP-regulated phosphopro	no	no	0.574	0.246	0.253	2e-10
Q9Y2K5	976	R3H domain-containing pro	no	no	0.235	0.084	0.333	2e-07

>sp|A0JNC2|R3HD2_BOVIN R3H domain-containing protein 2 OS=Bos taurus GN=R3HDM2 PE=2 SV=1

 Score = 69.7 bits (169), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 86/159 (54%), Gaps = 24/159 (15%)

Query: 24  FLVEALQ-NPRHRLTILRMELDIQRFLQNPDQQHFEFQHFP--TSYLRLAAHRVSQHYGL 80
           FLV  L+ NPR R+ +L++E +I  F+ + + Q   F+ FP  TSY R+  HRV+ ++G+
Sbjct: 157 FLVNTLKKNPRDRMMLLKLEQEILDFINDNNNQ---FKKFPQMTSYHRMLLHRVAAYFGM 213

Query: 81  VTMVQENGIEGLGNRILVRKTAESKYPAVRLSEIPAKQSEESDKLEKIKIAIRRRPNAGC 140
                ++ ++  G  +++ KT+ ++ P  R SE      ++    E  +  I +R +A  
Sbjct: 214 -----DHNVDQTGKAVIINKTSNTRIPEQRFSE----HIKDEKNTEFQQRFILKRDDASM 264

Query: 141 VNGANETGTKRSPV------RSVEERKEEYDRARARIFS 173
               N+    R P+      +S+EER+EEY R R RIF+
Sbjct: 265 DRDDNQI---RVPLQDGRRSKSIEEREEEYQRVRERIFA 300

Bos taurus (taxid: 9913)

>sp|Q9DCB4|ARP21_MOUSE cAMP-regulated phosphoprotein 21 OS=Mus musculus GN=Arpp21 PE=1 SV=2

 Score = 69.3 bits (168), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 117/230 (50%), Gaps = 28/230 (12%)

Query: 24  FLVEALQN-PRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVT 82
           FL+  L+N  R R+ +L+ME ++  F+ + +  + +F    +SY R+  HRV+ ++GL  
Sbjct: 151 FLINTLKNNSRDRMILLKMEQEMIDFIADSNNHYKKFPQM-SSYQRMLVHRVAAYFGL-- 207

Query: 83  MVQENGIEGLGNRILVRKTAESKYPAVRLSE-IPAKQSEESDK---LEKIKIAIRRRPNA 138
              ++ ++  G  +++ KT+ ++ P  R  E +  ++SEES K   L++   +I +  N 
Sbjct: 208 ---DHNVDQTGKSVIINKTSSTRIPEQRFCEHLKDEKSEESQKRFILKRDNSSIDKEDNQ 264

Query: 139 GCVNGANETGTKRSPVRSVEERKEEYDRARARIFSGPSSPNSEDTL---TQVSTDMKNIG 195
             ++   +   +RS  +S+EER+EEY R R RIF+  S  + E      +++  DM    
Sbjct: 265 NRMHPFRDD--RRS--KSIEEREEEYQRVRERIFAHDSVCSQESLFLDNSRLQEDMHICN 320

Query: 196 FNRDEREIVRNSITDAEKIISIRDGAGLSRVAIFRDREKDRTDPDYDRSY 245
               +R++ R          + RD +G +  +     E +   PD+ R++
Sbjct: 321 ETYKKRQLFR----------AHRDSSGRTSGSRQSSSETELRWPDHQRAW 360

Isoform 2 may act as a competitive inhibitor of calmodulin-dependent enzymes such as calcineurin in neurons.

Mus musculus (taxid: 10090)

>sp|Q80TM6|R3HD2_MOUSE R3H domain-containing protein 2 OS=Mus musculus GN=R3hdm2 PE=2 SV=2

 Score = 68.9 bits (167), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 86/159 (54%), Gaps = 24/159 (15%)

Query: 24  FLVEALQ-NPRHRLTILRMELDIQRFLQNPDQQHFEFQHFP--TSYLRLAAHRVSQHYGL 80
           FLV  L+ NPR R+ +L++E +I  F+ + + Q   F+ FP  TSY R+  HRV+ ++G+
Sbjct: 157 FLVNTLKKNPRDRMMLLKLEQEILDFINDNNNQ---FKKFPQMTSYHRMLLHRVAAYFGM 213

Query: 81  VTMVQENGIEGLGNRILVRKTAESKYPAVRLSEIPAKQSEESDKLEKIKIAIRRRPNAGC 140
                ++ ++  G  +++ KT+ ++ P  R SE      ++    E  +  I +R +A  
Sbjct: 214 -----DHNVDQTGKAVIINKTSSTRIPEQRFSE----HIKDEKNTEFQQRFILKRDDASM 264

Query: 141 VNGANETGTKRSPV------RSVEERKEEYDRARARIFS 173
               N+    R P+      +S+EER+EEY R R RIF+
Sbjct: 265 DRDDNQM---RVPLQDGRRSKSIEEREEEYQRVRERIFA 300

Mus musculus (taxid: 10090)

>sp|Q15032|R3HD1_HUMAN R3H domain-containing protein 1 OS=Homo sapiens GN=R3HDM1 PE=1 SV=3

 Score = 68.6 bits (166), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 97/189 (51%), Gaps = 20/189 (10%)

Query: 24  FLVEALQN-PRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVT 82
           FLV  L+N PR R+ +L++E +I  F+ N +    +F    TSY R+  HRV+ ++GL  
Sbjct: 156 FLVNTLKNNPRDRMMLLKLEQEILDFIGNNESPRKKFPPM-TSYHRMLLHRVAAYFGL-- 212

Query: 83  MVQENGIEGLGNRILVRKTAESKYPAVRLSEIPAKQSEESDKLEKI-KIAIRRRPNAGCV 141
              ++ ++  G  ++V KT+ ++ P  + +E       + DK E   K  I +R N+   
Sbjct: 213 ---DHNVDQSGKSVIVNKTSNTRIPDQKFNE-----HIKDDKGEDFQKRYILKRDNSSFD 264

Query: 142 NGANE-----TGTKRSPVRSVEERKEEYDRARARIFSGPSSPNSEDTLTQVSTDMKNIGF 196
              N+        +RS  +S+EER+EEY RAR RIFS  S  + E+ +       ++   
Sbjct: 265 KDDNQMRIRLKDDRRS--KSIEEREEEYQRARDRIFSQDSLCSQENYIIDKRLQDEDASS 322

Query: 197 NRDEREIVR 205
            +  R+I R
Sbjct: 323 TQQRRQIFR 331

Homo sapiens (taxid: 9606)

>sp|Q9UBL0|ARP21_HUMAN cAMP-regulated phosphoprotein 21 OS=Homo sapiens GN=ARPP21 PE=1 SV=2

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 114/233 (48%), Gaps = 33/233 (14%)

Query: 24  FLVEALQN-PRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVT 82
           FL+  L+N  R R+ +L+ME +I  F+ + +  + +F    +SY R+  HRV+ ++GL  
Sbjct: 152 FLINTLKNNSRDRMILLKMEQEIIDFIADNNNHYKKFPQM-SSYQRMLVHRVAAYFGL-- 208

Query: 83  MVQENGIEGLGNRILVRKTAESKYPAVRLSE-IPAKQSEESDKLEKIKIAIRRRPNAGCV 141
              ++ ++  G  +++ KT+ ++ P  R  E +  ++ EES K       I +R N+  +
Sbjct: 209 ---DHNVDQTGKSVIINKTSSTRIPEQRFCEHLKDEKGEESQKR-----FILKRDNS-SI 259

Query: 142 NGANETGTKRSPVR------SVEERKEEYDRARARIFSGPSSPNSEDTLTQVSTDMKNIG 195
           +  +    +  P R      S+EER+EEY R R RIF+  S  + E    + S  +++  
Sbjct: 260 DKEDNQQNRMHPFRDDRRSKSIEEREEEYQRVRERIFAHDSVCSQESLFVENSRLLEDSN 319

Query: 196 FNRD---EREIVRNSITDAEKIISIRDGAGLSRVAIFRDREKDRTDPDYDRSY 245
              +   +R++ R +          RDG+G +  +     E +    D+ R++
Sbjct: 320 ICNETYKKRQLFRGN----------RDGSGRTSGSRQSSSENELKWSDHQRAW 362

Isoform 2 may act as a competitive inhibitor of calmodulin-dependent enzymes such as calcineurin in neurons.

Homo sapiens (taxid: 9606)

>sp|Q9Y2K5|R3HD2_HUMAN R3H domain-containing protein 2 OS=Homo sapiens GN=R3HDM2 PE=1 SV=3

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 56/93 (60%), Gaps = 11/93 (11%)

Query: 24  FLVEALQ-NPRHRLTILRMELDIQRFLQNPDQQHFEFQHFP--TSYLRLAAHRVSQHYGL 80
           FLV  L+ NPR R+ +L++E +I  F+ + + Q   F+ FP  TSY R+  HRV+ ++G+
Sbjct: 157 FLVNTLKKNPRDRMMLLKLEQEILEFINDNNNQ---FKKFPQMTSYHRMLLHRVAAYFGM 213

Query: 81  VTMVQENGIEGLGNRILVRKTAESKYPAVRLSE 113
                ++ ++  G  +++ KT+ ++ P  R SE
Sbjct: 214 -----DHNVDQTGKAVIINKTSNTRIPEQRFSE 241

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	348
224086775	354	predicted protein [Populus trichocarpa]	0.971	0.954	0.727	1e-142
225440145	356	PREDICTED: uncharacterized protein LOC10	0.977	0.955	0.718	1e-139
224137642	354	predicted protein [Populus trichocarpa]	0.965	0.949	0.715	1e-138
255561144	349	r3h domain containing protein, putative	0.939	0.936	0.722	1e-134
255552461	350	r3h domain containing protein, putative	0.956	0.951	0.685	1e-124
449521539	354	PREDICTED: uncharacterized protein LOC10	0.933	0.918	0.658	1e-117
449437692	401	PREDICTED: uncharacterized protein LOC10	0.971	0.842	0.643	1e-117
363814416	336	uncharacterized protein LOC100814835 [Gl	0.922	0.955	0.651	1e-116
356571894	355	PREDICTED: uncharacterized protein LOC10	0.977	0.957	0.615	1e-115
359806964	355	uncharacterized protein LOC100784326 [Gl	0.977	0.957	0.627	1e-113

>gi|224086775|ref|XP_002307959.1| predicted protein [Populus trichocarpa] gi|222853935|gb|EEE91482.1| predicted protein [Populus trichocarpa]

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 251/345 (72%), Positives = 286/345 (82%), Gaps = 7/345 (2%)

Query: 1   MDSASSATAAAAIVNERESMVDPFLVEALQNPRHRLTILRMELDIQRFLQNPDQQHFEFQ 60
           MDS +    AA  +NE+ESMVDPFLVEALQNPRHRLTILRMELDIQRFLQNPDQQ FEFQ
Sbjct: 1   MDSTTQQAVAA--INEKESMVDPFLVEALQNPRHRLTILRMELDIQRFLQNPDQQLFEFQ 58

Query: 61  HFPTSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRKTAESKYPAVRLSEIPAKQSE 120
           HFPTSYLRLAAHRV+ HYGL+TMVQ+NGI+GLGN+ILV+KTA+S+YPAV L+ IPAKQ  
Sbjct: 59  HFPTSYLRLAAHRVAHHYGLITMVQDNGIDGLGNKILVQKTAQSRYPAVCLTAIPAKQL- 117

Query: 121 ESDKLEKIKIAIRRRPNAGCVNGANETGTKRSPVRSVEERKEEYDRARARIFSGPSSPNS 180
           ESDK EKIK+AIR RPN G +N  N  G KR+PVRSVEERKE+YDRARARIFS PSSP +
Sbjct: 118 ESDKPEKIKLAIRPRPNKGSINDPNGFGVKRNPVRSVEERKEDYDRARARIFSSPSSPTA 177

Query: 181 EDTLTQVSTDMKNIGFNRDEREIVRNSITDAEKIISIRDGAGLSRVAIFRDREKDRTDPD 240
           EDT+ ++ TD KN+  ++DE E  RNS+ D EK + IRD    SRVAIFRDREKDRTDPD
Sbjct: 178 EDTVPELPTDSKNLSSSKDENEESRNSVVDPEKNVFIRDSMS-SRVAIFRDREKDRTDPD 236

Query: 241 YDRSYE---RSLPTNQGFSLPPFNMQKVQLPFMQYDTGFPQFSQIPRTQASLSFRPPSSP 297
           YDRSY+   RSLP NQ FSL PFNMQK+  PFMQYD GFPQ  Q+PRTQASL ++P + P
Sbjct: 237 YDRSYDRYVRSLPANQSFSLTPFNMQKIPHPFMQYDAGFPQMGQMPRTQASLGYQPAAGP 296

Query: 298 VMSPYCAVGPNQTSVEAAYMQWPSAAMMYAHSYEQFRQAAFQVFF 342
           VMSP+CA+G NQTS +AAY+QWPSAAMMYAHSYEQFR AAFQ  F
Sbjct: 297 VMSPFCALGSNQTSRDAAYVQWPSAAMMYAHSYEQFRHAAFQAPF 341

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440145|ref|XP_002283240.1| PREDICTED: uncharacterized protein LOC100251643 [Vitis vinifera] gi|147820324|emb|CAN73572.1| hypothetical protein VITISV_007445 [Vitis vinifera] gi|297741684|emb|CBI32816.3| unnamed protein product [Vitis vinifera]

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 248/345 (71%), Positives = 281/345 (81%), Gaps = 5/345 (1%)

Query: 1   MDSASSATAAAAIVNERESMVDPFLVEALQNPRHRLTILRMELDIQRFLQNPDQQHFEFQ 60
           MDSA  A   +A   ++ESMVDPFLVEALQNPRHRLTILRMELDIQRFLQNPDQQ FEFQ
Sbjct: 1   MDSAPYANDVSATPGDKESMVDPFLVEALQNPRHRLTILRMELDIQRFLQNPDQQQFEFQ 60

Query: 61  HFPTSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRKTAESKYPAVRLSEIPAKQSE 120
           HFPTSYLRLAAHRV+ HYGL TMVQ+N ++GL NRI+V KTAES+ PA+ LSEIPAKQS 
Sbjct: 61  HFPTSYLRLAAHRVALHYGLQTMVQDNSVDGLANRIVVMKTAESRCPAICLSEIPAKQS- 119

Query: 121 ESDKLEKIKIAIRRRPNAGCVNGANETGTKRSPVRSVEERKEEYDRARARIFSGPSSPNS 180
           E++K E IKIAIRRRPN   +N  NETG KRS VR+VEERKEEYD+ARARIFS P+SP+S
Sbjct: 120 ENEKPEHIKIAIRRRPNKTSLNETNETGIKRSSVRTVEERKEEYDKARARIFSTPASPDS 179

Query: 181 EDTLTQVSTDMKNIGFNRDEREIVRNSITDAEKIISIRDGAGLSRVAIFRDREKDRTDPD 240
           +DTL Q   D KN+  N DE E  RNS+ D EK ISIRD    SRVAIFRDREKDRTDPD
Sbjct: 180 DDTLPQAPADGKNLCLNGDENEGCRNSMADPEKNISIRDSGTSSRVAIFRDREKDRTDPD 239

Query: 241 YDRSYE---RSLPTNQGFSLPPFNMQKVQLPFMQYDTGFPQFSQIPRTQASLSFRPPSSP 297
           YDRSYE   R+LPTNQ FSL PF+ QK+Q PF+QYDTGFPQ  QI RTQASLS+R PS+P
Sbjct: 240 YDRSYERYVRNLPTNQSFSLAPFDAQKIQHPFLQYDTGFPQLGQIQRTQASLSYR-PSNP 298

Query: 298 VMSPYCAVGPNQTSVEAAYMQWPSAAMMYAHSYEQFRQAAFQVFF 342
           +M+P+CA+G NQTS +A Y+QWPS +MMYAHSYEQFR A FQ  F
Sbjct: 299 IMNPFCAMGLNQTSRDAVYLQWPSHSMMYAHSYEQFRHAVFQAPF 343

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137642|ref|XP_002322608.1| predicted protein [Populus trichocarpa] gi|222867238|gb|EEF04369.1| predicted protein [Populus trichocarpa]

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 244/341 (71%), Positives = 279/341 (81%), Gaps = 5/341 (1%)

Query: 5   SSATAAAAIVNERESMVDPFLVEALQNPRHRLTILRMELDIQRFLQNPDQQHFEFQHFPT 64
           S+   A A +NE+ESM+DPFLVEALQNPRHRLTILRMELDIQRFLQNPDQQ FEF HFPT
Sbjct: 3   STTPQAVAAINEKESMMDPFLVEALQNPRHRLTILRMELDIQRFLQNPDQQVFEFPHFPT 62

Query: 65  SYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRKTAESKYPAVRLSEIPAKQSEESDK 124
           SYLRLAAHRV+QHYGL+TMVQ+NGI+GL N+ILV+KTAE +YPAVRLSEIPAKQS  SD 
Sbjct: 63  SYLRLAAHRVAQHYGLITMVQDNGIDGLLNKILVQKTAECRYPAVRLSEIPAKQS-GSDT 121

Query: 125 LEKIKIAIRRRPNAGCVNGANETGTKRSPVRSVEERKEEYDRARARIFSGPSSPNSEDTL 184
            E IK+AIR RPN G +N  N  G KRSPVRSVEERKEEYDRARARIFS PSSP ++DT+
Sbjct: 122 PEMIKLAIRPRPNKGSINDPNGFGIKRSPVRSVEERKEEYDRARARIFSSPSSPTADDTV 181

Query: 185 TQVSTDMKNIGFNRDEREIVRNSITDAEKIISIRDGAGLSRVAIFRDREKDRTDPDYDRS 244
            Q+ TD KN+  ++DE E  R S+ D EK + +RDG   SRVAIFRDREKDRTDPDYDRS
Sbjct: 182 PQLPTDSKNLSSSKDENEECRISVVDPEKNVFVRDGMS-SRVAIFRDREKDRTDPDYDRS 240

Query: 245 YE---RSLPTNQGFSLPPFNMQKVQLPFMQYDTGFPQFSQIPRTQASLSFRPPSSPVMSP 301
           YE   RSLP NQ FSL PFNMQK+ +P+MQYD  FPQ  Q+PRTQASL + P ++P MSP
Sbjct: 241 YERYVRSLPANQSFSLTPFNMQKIPIPYMQYDPSFPQLGQMPRTQASLGYHPAANPAMSP 300

Query: 302 YCAVGPNQTSVEAAYMQWPSAAMMYAHSYEQFRQAAFQVFF 342
           +CA+G NQTS +AAY+QWPS AMMYAHSY+QFR A FQ  F
Sbjct: 301 FCAMGSNQTSRDAAYVQWPSTAMMYAHSYDQFRHATFQAPF 341

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561144|ref|XP_002521584.1| r3h domain containing protein, putative [Ricinus communis] gi|223539262|gb|EEF40855.1| r3h domain containing protein, putative [Ricinus communis]

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 240/332 (72%), Positives = 272/332 (81%), Gaps = 5/332 (1%)

Query: 14  VNERESMVDPFLVEALQNPRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHR 73
           + ++ESMVDPFLVEALQNPRHRLTILRMELDIQRFLQNP QQ FEFQHFPTSYLRLAAHR
Sbjct: 7   ITDKESMVDPFLVEALQNPRHRLTILRMELDIQRFLQNPVQQQFEFQHFPTSYLRLAAHR 66

Query: 74  VSQHYGLVTMVQENGIEGLGNRILVRKTAESKYPAVRLSEIPAKQSEESDKLEKIKIAIR 133
           V+QHYGL+TMVQ+N  +GL N+ILV+KTAE +YPAVRL EIPAKQ  ESDK E++KI IR
Sbjct: 67  VAQHYGLITMVQDNSFDGLVNKILVKKTAEIRYPAVRLCEIPAKQW-ESDKSEQVKIVIR 125

Query: 134 RRPNAGCVNGANETGTKRSPVRSVEERKEEYDRARARIFSGPSSPNSEDTLTQVSTDMKN 193
            RPN G  N  NE G K+ PVRSVEERKEEYDRARARIFS PSS N +D ++Q S D K+
Sbjct: 126 PRPNKGSTNEFNEFGVKQDPVRSVEERKEEYDRARARIFSSPSSTNLDDVVSQGSIDRKS 185

Query: 194 IGFNRDEREIVRNSITDAEKIISIRDGAGLSRVAIFRDREKDRTDPDYDRSYE---RSLP 250
              ++DE E  R S  D EK I+ RDGA  SRVAIFRDREKDRTDPDYDRSY+   RSLP
Sbjct: 186 TNPSKDELENCRYSANDPEKNINPRDGAP-SRVAIFRDREKDRTDPDYDRSYDRYIRSLP 244

Query: 251 TNQGFSLPPFNMQKVQLPFMQYDTGFPQFSQIPRTQASLSFRPPSSPVMSPYCAVGPNQT 310
           TNQ F+L P NMQK+QLPF+ YDTGFPQ  Q+PRTQ SLS++P +SPVMSP+CAVG NQT
Sbjct: 245 TNQSFNLAPLNMQKIQLPFIPYDTGFPQLGQMPRTQNSLSYQPAASPVMSPFCAVGSNQT 304

Query: 311 SVEAAYMQWPSAAMMYAHSYEQFRQAAFQVFF 342
           S + AY+QWPSA+MMYAHSYEQFR A FQ  F
Sbjct: 305 SRDPAYVQWPSASMMYAHSYEQFRHAVFQAPF 336

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552461|ref|XP_002517274.1| r3h domain containing protein, putative [Ricinus communis] gi|223543537|gb|EEF45067.1| r3h domain containing protein, putative [Ricinus communis]

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 231/337 (68%), Positives = 269/337 (79%), Gaps = 4/337 (1%)

Query: 8   TAAAAIVNERESMVDPFLVEALQNPRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYL 67
           +A   ++NE+ESMVDPFLVEAL NP HRLTILRME DIQRFLQ PDQQ FEFQHFPTSYL
Sbjct: 3   SALNRVINEKESMVDPFLVEALHNPSHRLTILRMEHDIQRFLQIPDQQQFEFQHFPTSYL 62

Query: 68  RLAAHRVSQHYGLVTMVQENGIEGLGNRILVRKTAESKYPAVRLSEIPAKQSEESDKLEK 127
           RLAAHRV+QHYGL+TMVQ+ G +GL N+ILV+KTAES+YPAV L EIPAKQ E  DK E+
Sbjct: 63  RLAAHRVAQHYGLITMVQDYGYDGLVNKILVKKTAESRYPAVCLCEIPAKQLER-DKPEQ 121

Query: 128 IKIAIRRRPNAGCVNGANETGTKRSPVRSVEERKEEYDRARARIFSGPSSPNSEDTLTQV 187
           +KI IR RPN G +N  NE G K+SPVRSVEERKEEYDRARARIFS P SP+S+D ++  
Sbjct: 122 VKIVIRPRPNKGSINECNEFGVKQSPVRSVEERKEEYDRARARIFSSPCSPSSDDIVSHA 181

Query: 188 STDMKNIGFNRDEREIVRNSITDAEKIISIRDGAGLSRVAIFRDREKDRTDPDYDRSYE- 246
           S D K+   + DE E  RNS +D EK I  RDGA   RVAIFRDREKDRTDPDYDRSY+ 
Sbjct: 182 SIDGKSTSPSEDENEGCRNSASDPEKNIYPRDGAA-PRVAIFRDREKDRTDPDYDRSYDR 240

Query: 247 -RSLPTNQGFSLPPFNMQKVQLPFMQYDTGFPQFSQIPRTQASLSFRPPSSPVMSPYCAV 305
            RSLP NQGF++ PFN+QK+QLP++QYDTGFPQ  Q+PRTQ +LS +P ++PVMSP+ A+
Sbjct: 241 YRSLPFNQGFNMAPFNLQKIQLPYVQYDTGFPQLGQMPRTQNALSHQPAANPVMSPFGAM 300

Query: 306 GPNQTSVEAAYMQWPSAAMMYAHSYEQFRQAAFQVFF 342
           G NQ   + AY+QWPS AMMY HSYEQFR A FQ  F
Sbjct: 301 GSNQAPRDTAYVQWPSTAMMYTHSYEQFRHAVFQAPF 337

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449521539|ref|XP_004167787.1| PREDICTED: uncharacterized protein LOC101224356 [Cucumis sativus]

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 218/331 (65%), Positives = 261/331 (78%), Gaps = 6/331 (1%)

Query: 15  NERESMVDPFLVEALQNPRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRV 74
           N++ESMVDPFLVEALQNPRHRLTILRMELDIQ+FL NPDQQ FEFQHFPTSYLRLAAHRV
Sbjct: 14  NDKESMVDPFLVEALQNPRHRLTILRMELDIQKFLHNPDQQLFEFQHFPTSYLRLAAHRV 73

Query: 75  SQHYGLVTMVQENGIEGLGNRILVRKTAESKYPAVRLSEIPAKQSEESDKLEKIKIAIRR 134
           +QHYGL TMVQ++GI+G GNRI+VRK AE++ P+VRLSEIPAKQ  +++K E++KI IR 
Sbjct: 74  AQHYGLQTMVQDSGIDGFGNRIVVRKMAENRLPSVRLSEIPAKQL-DNEKHEQVKIVIRP 132

Query: 135 RPNAGCVNGANETGTKRSPVRSVEERKEEYDRARARIFSGPSSPNSEDTLTQVSTDMKNI 194
           RPN      ANE G K+S VRSVEERKEEYDRARARIFS PSSP  +DT++Q+ ++ K  
Sbjct: 133 RPNKMSGISANEGGHKQSSVRSVEERKEEYDRARARIFSSPSSPEIDDTISQIPSEGKYA 192

Query: 195 GFNRDEREIVRNSITDAEKIISIRDGAGLSRVAIFRDREKDRTDPDYDRSYE---RSLPT 251
             NRDE E  R    + EK  + RDG   SRVAIF+DREKDR+DPDYDR+Y+   R+LPT
Sbjct: 193 CSNRDETEGCRTLGGELEK-FNGRDGM-TSRVAIFKDREKDRSDPDYDRNYDRYIRNLPT 250

Query: 252 NQGFSLPPFNMQKVQLPFMQYDTGFPQFSQIPRTQASLSFRPPSSPVMSPYCAVGPNQTS 311
           NQ  SL PF M KVQ PF+QYD+G+     +P TQAS+++ P  SPV+SP+CA+G NQ S
Sbjct: 251 NQNLSLAPFIMPKVQPPFVQYDSGYSLVGHMPGTQASVNYGPHPSPVVSPFCAMGLNQAS 310

Query: 312 VEAAYMQWPSAAMMYAHSYEQFRQAAFQVFF 342
            +A+Y QW SAAMMYAHSY QFR +AFQ  F
Sbjct: 311 RDASYEQWQSAAMMYAHSYNQFRHSAFQAPF 341

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437692|ref|XP_004136625.1| PREDICTED: uncharacterized protein LOC101215817 [Cucumis sativus]

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 222/345 (64%), Positives = 266/345 (77%), Gaps = 7/345 (2%)

Query: 1   MDSASSATAAAAIVNERESMVDPFLVEALQNPRHRLTILRMELDIQRFLQNPDQQHFEFQ 60
           M+SAS         N++ESMVDPFLVEALQNPRHRLTILRMELDIQ+FL NPDQQ FEFQ
Sbjct: 48  MESASFDPTPQGF-NDKESMVDPFLVEALQNPRHRLTILRMELDIQKFLHNPDQQLFEFQ 106

Query: 61  HFPTSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRKTAESKYPAVRLSEIPAKQSE 120
           HFPTSYLRLAAHRV+QHYGL TMVQ++GI+G GNRI+VRK AE++ P+VRLSEIPAKQ  
Sbjct: 107 HFPTSYLRLAAHRVAQHYGLQTMVQDSGIDGFGNRIVVRKMAENRLPSVRLSEIPAKQL- 165

Query: 121 ESDKLEKIKIAIRRRPNAGCVNGANETGTKRSPVRSVEERKEEYDRARARIFSGPSSPNS 180
           +++K E++KI IR RPN      ANE G K+S VRSVEERKEEYDRARARIFS PSSP  
Sbjct: 166 DNEKHEQVKIVIRPRPNKMSGISANEGGHKQSSVRSVEERKEEYDRARARIFSSPSSPEI 225

Query: 181 EDTLTQVSTDMKNIGFNRDEREIVRNSITDAEKIISIRDGAGLSRVAIFRDREKDRTDPD 240
           +DT++Q+ ++ K    NRDE E  R    + EK  + RDG   SRVAIF+DREKDR+DPD
Sbjct: 226 DDTISQIPSEGKYACSNRDETEGCRTLGGELEK-FNGRDGM-TSRVAIFKDREKDRSDPD 283

Query: 241 YDRSYE---RSLPTNQGFSLPPFNMQKVQLPFMQYDTGFPQFSQIPRTQASLSFRPPSSP 297
           YDR+Y+   R+LPTNQ  SL PF M KVQ PF+QYD+G+     +P TQAS+++ P  SP
Sbjct: 284 YDRNYDRYIRNLPTNQNLSLAPFIMPKVQPPFVQYDSGYSLVGHMPGTQASVNYGPHPSP 343

Query: 298 VMSPYCAVGPNQTSVEAAYMQWPSAAMMYAHSYEQFRQAAFQVFF 342
           V+SP+CA+G NQ S +A+Y QW SAAMMYAHSY QFR +AFQ  F
Sbjct: 344 VVSPFCAMGLNQASRDASYEQWQSAAMMYAHSYNQFRHSAFQAPF 388

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814416|ref|NP_001242845.1| uncharacterized protein LOC100814835 [Glycine max] gi|255645243|gb|ACU23119.1| unknown [Glycine max]

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 213/327 (65%), Positives = 248/327 (75%), Gaps = 6/327 (1%)

Query: 20  MVDPFLVEALQNPRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYG 79
           MVDPFLVEALQNPRHRLTILRMELDIQ+FL N DQQHFEFQHFP+SYLRLAAHRV+QHY 
Sbjct: 1   MVDPFLVEALQNPRHRLTILRMELDIQKFLDNADQQHFEFQHFPSSYLRLAAHRVAQHYN 60

Query: 80  LVTMVQENGIEGLGNRILVRKTAESKYPAVRLSEIPAKQSEESDKLEKIKIAIRRRPNAG 139
           + TMVQ+NG++G G++ILVRK  ESKYP VRLSEIPAKQ  E+DK E  K  IR RPN  
Sbjct: 61  MQTMVQDNGLDGQGSKILVRKLPESKYPVVRLSEIPAKQL-ENDKSELKKFVIRPRPNRN 119

Query: 140 CVNGANETGTKRSPVRSVEERKEEYDRARARIFSGPSSPNSEDTLTQVSTDMKNIGFNRD 199
            +N AN  GTK +PVRSVEERKEEYDRARARIFS P S  S DT + V  D +N   ++D
Sbjct: 120 SLNDANGVGTKGNPVRSVEERKEEYDRARARIFSSPRSSESGDTSSMVPMDGRNSSTSKD 179

Query: 200 EREIVRNSITDAEKIISIRDGAGLSRVAIFRDREKDRTDPDYDRS---YERSLPTNQGFS 256
           E E  +N + D+E+ IS+RD    +RVAI RDREKDR+DPDYDRS   Y RS+P +   +
Sbjct: 180 ENETSKNPMADSERYISVRDSCS-TRVAILRDREKDRSDPDYDRSYGRYARSIPAS-AVN 237

Query: 257 LPPFNMQKVQLPFMQYDTGFPQFSQIPRTQASLSFRPPSSPVMSPYCAVGPNQTSVEAAY 316
           L PFN+QK Q  F QYD  F Q  Q+ +TQASL + PPS+P+MSP+   G NQTS E AY
Sbjct: 238 LVPFNLQKAQPSFAQYDATFNQLGQMSQTQASLGYAPPSTPIMSPFGTPGLNQTSSEGAY 297

Query: 317 MQWPSAAMMYAHSYEQFRQAAFQVFFG 343
           +QWPSAAMMYAHSY+QFR   FQ  FG
Sbjct: 298 LQWPSAAMMYAHSYDQFRHGVFQAPFG 324

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571894|ref|XP_003554106.1| PREDICTED: uncharacterized protein LOC100796710 [Glycine max]

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 213/346 (61%), Positives = 255/346 (73%), Gaps = 6/346 (1%)

Query: 1   MDSASSATAAAAIVNERESMVDPFLVEALQNPRHRLTILRMELDIQRFLQNPDQQHFEFQ 60
           MDS   +  + +   ++ESMVDPFLVEALQNPRHRLTILRMEL+IQ+FL N DQ HFEF 
Sbjct: 1   MDSPCLSNDSVSGFKDKESMVDPFLVEALQNPRHRLTILRMELEIQKFLNNADQLHFEFH 60

Query: 61  HFPTSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRKTAESKYPAVRLSEIPAKQSE 120
           HFP+SYLRLAAHRV+QHY + TMVQ+NG++G G++ILVRK  ESKYP VRLSEIPAKQ  
Sbjct: 61  HFPSSYLRLAAHRVAQHYNMQTMVQDNGLDGQGSKILVRKLPESKYPVVRLSEIPAKQL- 119

Query: 121 ESDKLEKIKIAIRRRPNAGCVNGANETGTKRSPVRSVEERKEEYDRARARIFSGPSSPNS 180
           E+DK E+ KI IR RPN   +N AN  G K +P+RSVEERKEEYDRARARIFS P S  S
Sbjct: 120 ENDKSEQKKIVIRPRPNKNSLNDANGVGRKGNPLRSVEERKEEYDRARARIFSSPRSSES 179

Query: 181 EDTLTQVSTDMKNIGFNRDEREIVRNSITDAEKIISIRDGAGLSRVAIFRDREKDRTDPD 240
            DT + V  D +    ++DE E  +N + D+E+ IS RD    +RVAI RDREKDR+DPD
Sbjct: 180 GDTSSVVPMDGRYSSTSKDENETSKNPMADSERYISTRDSCS-TRVAILRDREKDRSDPD 238

Query: 241 YDRS---YERSLPTNQGFSLPPFNMQKVQLPFMQYDTGFPQFSQIPRTQASLSFRPPSSP 297
           YDRS   Y RS+PT+   +L PFN+QK Q  F QYD  F Q  Q+ +TQASL + PPS+P
Sbjct: 239 YDRSYGRYARSIPTS-AVNLVPFNLQKAQPSFAQYDATFNQLGQMSQTQASLGYIPPSTP 297

Query: 298 VMSPYCAVGPNQTSVEAAYMQWPSAAMMYAHSYEQFRQAAFQVFFG 343
           +M P+   G NQTS E  Y+QWPSAAMMYAHSY+QFR A FQ  FG
Sbjct: 298 IMGPFGTTGLNQTSSEGVYLQWPSAAMMYAHSYDQFRHAVFQAPFG 343

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806964|ref|NP_001241328.1| uncharacterized protein LOC100784326 [Glycine max] gi|255636099|gb|ACU18394.1| unknown [Glycine max]

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 217/346 (62%), Positives = 262/346 (75%), Gaps = 6/346 (1%)

Query: 1   MDSASSATAAAAIVNERESMVDPFLVEALQNPRHRLTILRMELDIQRFLQNPDQQHFEFQ 60
           MDS+       +   ++ESMVDPFLVEAL+NPRHR+TILRMELDIQRFL N D QHFEFQ
Sbjct: 1   MDSSCVPNGDVSGFKDKESMVDPFLVEALENPRHRVTILRMELDIQRFLSNADYQHFEFQ 60

Query: 61  HFPTSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRKTAESKYPAVRLSEIPAKQSE 120
           HFP+SYLRLAAHRV+QHYG+ TMVQ+NG++G G RI+VRK AES+YP VRLSEIPAKQ  
Sbjct: 61  HFPSSYLRLAAHRVAQHYGMQTMVQDNGLDGQGTRIMVRKMAESRYPMVRLSEIPAKQL- 119

Query: 121 ESDKLEKIKIAIRRRPNAGCVNGANETGTKRSPVRSVEERKEEYDRARARIFSGPSSPNS 180
           E+DK EKIKIAIR RPN   +N ANE G K +P RSVEERK EYDRARARIFS   S +S
Sbjct: 120 ENDKPEKIKIAIRPRPNKISLNEANEAGRKSNPPRSVEERKVEYDRARARIFSSSRSCDS 179

Query: 181 EDTLTQVSTDMKNIGFNRDEREIVRNSITDAEKIISIRDGAGLSRVAIFRDREKDRTDPD 240
           +DTL+Q STD KN   N+DE E  +  +  +E+    RD    +RVAI RDREKDR+DPD
Sbjct: 180 DDTLSQTSTDEKNSLINKDENETSKTPVVYSEQCSIGRD-INSTRVAILRDREKDRSDPD 238

Query: 241 YDRSYE---RSLPTNQGFSLPPFNMQKVQLPFMQYDTGFPQFSQIPRTQASLSFRPPSSP 297
           YDR+YE   RS+PT+   +L PFN+Q+V+ PF+QYD  F Q SQ+ + QASL + P  SP
Sbjct: 239 YDRNYERYARSIPTS-SVNLMPFNLQQVRHPFVQYDNAFNQLSQMSQNQASLGYGPQPSP 297

Query: 298 VMSPYCAVGPNQTSVEAAYMQWPSAAMMYAHSYEQFRQAAFQVFFG 343
           +M+P+   G NQ   +AAY+QWPSAA+MYAHSY+QFRQA FQ  FG
Sbjct: 298 MMNPFGVTGLNQVPRDAAYVQWPSAAVMYAHSYDQFRQAVFQAPFG 343

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	348
TAIR|locus:2103550	353	AT3G56680 [Arabidopsis thalian	0.902	0.889	0.569	1.8e-94
TAIR|locus:2058520	351	AT2G40960 [Arabidopsis thalian	0.956	0.948	0.501	3.7e-80
TAIR|locus:2103237	333	AT3G10770 [Arabidopsis thalian	0.853	0.891	0.533	5.1e-74
TAIR|locus:2175279	324	AT5G05100 [Arabidopsis thalian	0.844	0.907	0.525	2.8e-73
UNIPROTKB|B5MCU0	990	R3HDM2 "R3H domain-containing	0.491	0.172	0.297	4.2e-14
UNIPROTKB|H9L0H9	775	H9L0H9 "Uncharacterized protei	0.580	0.260	0.284	5.5e-14
UNIPROTKB|E1C2S9	1089	R3HDM1 "Uncharacterized protei	0.640	0.204	0.277	7.7e-14
UNIPROTKB|F1MEA2	988	R3HDM2 "R3H domain-containing	0.491	0.173	0.297	9.3e-14
UNIPROTKB|A0JNC2	989	R3HDM2 "R3H domain-containing	0.491	0.172	0.297	9.3e-14
ZFIN|ZDB-GENE-030131-7119	1028	r3hdm1 "R3H domain containing	0.566	0.191	0.287	8.8e-13

TAIR|locus:2103550 AT3G56680 [Arabidopsis thaliana (taxid:3702)]

 Score = 940 (336.0 bits), Expect = 1.8e-94, P = 1.8e-94
 Identities = 185/325 (56%), Positives = 234/325 (72%)

Query:    21 VDPFLVEALQNPRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGL 80
             VDPFLVEAL N RHRLTILRMELD+QR LQNP+QQ FEFQHFPTSYLRLAAHRV+ HYGL
Sbjct:    24 VDPFLVEALHNSRHRLTILRMELDVQRLLQNPEQQQFEFQHFPTSYLRLAAHRVANHYGL 83

Query:    81 VTMVQENGIEGLGNRILVRKTAESKYPAVRLSEIPAKQSEESDKLEKIKIAIRRRPNAGC 140
              T VQE+G +G  NRILV KT ESK+PAVRLSEIP  +  E+ K E  K++I+ RP+ G 
Sbjct:    84 ATAVQESGADGNENRILVTKTTESKFPAVRLSEIPVAKQSENGKFESRKVSIKTRPSKGS 143

Query:   141 VNGANETGTKRSPVRSVEERKEEYDRARARIFSGPSSPNSEDTLTQVSTDMKNIGFNRDE 200
               GA +    R P+RSVEERKEEYD+AR RIFSG +  + +D+ ++     +N   +RD+
Sbjct:   144 GYGAGDLEKNRGPLRSVEERKEEYDKARERIFSGLTGLSCDDSSSETQVYERNASLSRDD 203

Query:   201 REIVRNSITDAEKIISIRDGAGLSRVAIFRDREKDRTDPDYDRSYER---SLPTNQGFSL 257
             +++ +N+  + +K +SIR+    SRVAIFRDREKDR DPDYDR ++R   SLP NQ F+L
Sbjct:   204 KQVSKNAYVEVKKNLSIRESGPTSRVAIFRDREKDRFDPDYDRRHQRYIRSLPVNQNFNL 263

Query:   258 PPFNMQKVQLPFMQYDTGFPQFSQIPRTQASLSFRPPSSPVMSPYCAVGPNQTSVEAAYM 317
             PPFN+Q++  P+  Y+ GF  ++QIP   A L F P  S +MSPY   G   T+++A YM
Sbjct:   264 PPFNIQQIPTPY--YEMGFTGYNQIPSPPAPLGFGPHPSSIMSPY---G---TTMDAMYM 315

Query:   318 QWPSAAMMYAHSYEQFRQAAFQVFF 342
              WP+AAMMYAH YEQFR  + Q  F
Sbjct:   316 HWPNAAMMYAHPYEQFRNGSLQAQF 340

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

TAIR|locus:2058520 AT2G40960 [Arabidopsis thaliana (taxid:3702)]

 Score = 805 (288.4 bits), Expect = 3.7e-80, P = 3.7e-80
 Identities = 174/347 (50%), Positives = 227/347 (65%)

Query:     1 MDXXXXXXXXXXIVNERESMVDPFLVEALQNPRHRLTILRMELDIQRFLQNPDQQHFEFQ 60
             MD          ++ ++   VDPFLVEALQNPRHRLTILRMELD+QRFLQ+PDQQ FEFQ
Sbjct:     1 MDTALTSESGCAVIADKGFNVDPFLVEALQNPRHRLTILRMELDVQRFLQSPDQQQFEFQ 60

Query:    61 HFPTSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRKTAESKYPAVRLSEIPAKQSE 120
             HFPTSYLR AAHRV+ HYGL+T V++ G +G  +RI+V K+++S++PA RLSEIP KQSE
Sbjct:    61 HFPTSYLRFAAHRVANHYGLITSVRDGGADGNESRIVVTKSSDSRFPAARLSEIPVKQSE 120

Query:   121 ESDKLEKIKIAIRRRPNAGCVNGANETGTKRSPVRSVEERKEEYDRARARIFSGPSSPNS 180
              + K E +K+ I+ RP  G  +G      K   ++SVEERKE+YDRARARIF+G  + + 
Sbjct:   121 -TGKFEHMKVVIKPRPTKG--SGMEGDELKGGLLKSVEERKEDYDRARARIFNGLVNIDC 177

Query:   181 EDTLTQVSTDMKNIGFNRDEREIVRNSITDAEKIISIRDGAGLSRVAIFRDREKDRTDPD 240
              D+ ++ +    N   +RDE ++++N   +A+K    R     SR+AI RDREKDR DPD
Sbjct:   178 NDSSSETNPWRVNCSSSRDENQVLKNGNIEADKNNISRKSNPASRIAILRDREKDRYDPD 237

Query:   241 YDRS---YERSLPTNQGFSLPPFNMQKVQLPFMQYDTGFPQFSQIPRTQASLSFRPPSSP 297
             YDRS   Y  +LP +Q   +  FN+Q +  P   YD GF  +S  P    SL+    S  
Sbjct:   238 YDRSNYRYISNLPVDQNLCVAHFNIQTMGTPI--YDMGFRGYS--PTAPPSLNLGQHS-- 291

Query:   298 VMSPYCAVGPNQTSVEAA-YMQWPSAA-MMYAHSYEQFRQAAFQVFF 342
             VMSP    G NQ S +AA YMQWP+AA +MY HSY+ FR + FQ  F
Sbjct:   292 VMSPCVTTGLNQPSRDAAMYMQWPNAAAVMYTHSYDHFRNSPFQAQF 338

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2103237 AT3G10770 [Arabidopsis thaliana (taxid:3702)]

 Score = 747 (268.0 bits), Expect = 5.1e-74, P = 5.1e-74
 Identities = 175/328 (53%), Positives = 221/328 (67%)

Query:    14 VNERESMVDPFLVEALQNPRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHR 73
             + E+E+MVDPFLVEALQNPRHRLTILRMELDIQ+F QNP+Q  FEF  FPTSYLRLAAHR
Sbjct:     4 MTEKEAMVDPFLVEALQNPRHRLTILRMELDIQKFFQNPEQLQFEFPPFPTSYLRLAAHR 63

Query:    74 VSQHYGLVTMVQENGI---EGLGNRILVRKTAESKYPAVRLSEIPAKQSEESDKLEKIKI 130
             V+QHYGLVTM  +NG    +G  NRILV KTAES++P V LSEIP KQ E   + E  KI
Sbjct:    64 VAQHYGLVTMALDNGTGAGDGSDNRILVTKTAESRFPYVCLSEIPVKQPENG-RPEGFKI 122

Query:   131 AIRRRPNAGCVNGANETGTKRSPVRSVEERKEEYDRARARIFSGPSSPNSEDT--LTQVS 188
             AI+ RP  G   G + +G +++ +RSVEERKEEYD+ARARIF+ PSS +SED+  L   S
Sbjct:   123 AIKPRPKRGSGCGGSGSGVQQNLLRSVEERKEEYDKARARIFNSPSSSDSEDSSSLRPPS 182

Query:   189 TDMKNIGFNRDEREI-VRNSITDAEKIISIRDGAGLSRVAIFRDREKDRTDPDYDRSYER 247
              +++N   NR+E E+ V NS  DA      RD    SRVAI RDREKDR DPDYDRSY+R
Sbjct:   183 LEVRNTCINRNETEVAVNNSPVDAVT----RDSGRTSRVAIIRDREKDRYDPDYDRSYDR 238

Query:   248 SL--PTNQGFSLPP----FNMQKVQLPFMQYDTGFPQFSQIPRT-QASLSFRPPSSPVMS 300
              +  P  +   + P    F+   + +PF  +D GF  F  +PR  QA+L++  P +P +S
Sbjct:   239 YVVDPAYRYVRVMPSGQSFSPMPIHIPF--HD-GF--FPHMPRGHQANLNYGHPLNPALS 293

Query:   301 PYCAVGPNQTSVEAAYMQWPSAAMM-YA 327
             P+       T   A+Y  WP++ +M YA
Sbjct:   294 PF-------THNVASYTPWPNSPVMNYA 314

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2175279 AT5G05100 [Arabidopsis thaliana (taxid:3702)]

 Score = 740 (265.6 bits), Expect = 2.8e-73, P = 2.8e-73
 Identities = 173/329 (52%), Positives = 216/329 (65%)

Query:    14 VNERESMVDPFLVEALQNPRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHR 73
             ++++E+MVDPFLVEALQNPRHRLTILRMELDIQ+F Q+P+QQ +EFQ  PTSYLRL AHR
Sbjct:     4 MSDKEAMVDPFLVEALQNPRHRLTILRMELDIQKFFQSPEQQQYEFQPLPTSYLRLIAHR 63

Query:    74 VSQHYGLVTMVQENG-IEGLGNRILVRKTAESKYPAVRLSEIPAKQSEESDKLEKIKIAI 132
             V+QHYGL T   E G ++G GNRIL  KT ES+YP V LSEIP KQ E   + E  KIAI
Sbjct:    64 VAQHYGLFTTALEGGGVDGSGNRILATKTVESRYPYVCLSEIPVKQPEIHGRPEGFKIAI 123

Query:   133 RRRPNAGCVNGANETGTKRSPVRSVEERKEEYDRARARIFSGPSSPNSEDTLTQVST--- 189
             + RPN G     + +G +++ +RSVEERKEEYD+ARARIF+ PSS +SED+ T+      
Sbjct:   124 KPRPNRGAGGSGSGSGVEKNLLRSVEERKEEYDKARARIFNSPSSSDSEDSSTRAPPPPY 183

Query:   190 ---DMK-NIGF-NRDEREIVRN---SITDAEKIISIRDGAGLSRVAIFRDREKDRTDPDY 241
                D K N    +R+E E+V N   +  D E+   IRD    SRVAI RDREKDR DPDY
Sbjct:   184 PRLDSKHNTACPSRNETEVVVNYNSNPVDVERNGVIRDSGRTSRVAIIRDREKDRYDPDY 243

Query:   242 DRS-YERSLPTNQGFSLPPFNMQKVQLPFMQYDTGFPQFSQIPRTQASLSFRPPSSPVMS 300
             DR+ Y R  P  Q F+  P     + LPF  +D  FPQ   +PRTQASL++  P +P M+
Sbjct:   244 DRNRYVRVAPPVQNFNPIP-----IPLPF--HDAIFPQ---MPRTQASLNYGHPLNPAMT 293

Query:   301 PYCAVGPNQTSVEAAYMQWPSAAMMYAHS 329
                   P+       Y +WPSA M YA +
Sbjct:   294 -----APS-------YTEWPSATMTYAQT 310

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

UNIPROTKB|B5MCU0 R3HDM2 "R3H domain-containing protein 2" [Homo sapiens (taxid:9606)]

 Score = 189 (71.6 bits), Expect = 4.2e-14, Sum P(2) = 4.2e-14
 Identities = 58/195 (29%), Positives = 100/195 (51%)

Query:    24 FLVEALQ-NPRHRLTILRMELDIQRFLQNPDQQHFEFQHFP--TSYLRLAAHRVSQHYGL 80
             FLV  L+ NPR R+ +L++E +I  F+ + + Q   F+ FP  TSY R+  HRV+ ++G+
Sbjct:   157 FLVNTLKKNPRDRMMLLKLEQEILEFINDNNNQ---FKKFPQMTSYHRMLLHRVAAYFGM 213

Query:    81 VTMVQENGIEGLGNRILVRKTAESKYPAVRLSEIPAKQSEESDKLEKIKIAIRRRPNAGC 140
                  ++ ++  G  +++ KT+ ++ P  R SE   K  + ++  ++    I +R +A  
Sbjct:   214 -----DHNVDQTGKAVIINKTSNTRIPEQRFSE-HIKDEKNTEFQQRF---ILKRDDASM 264

Query:   141 VNGANETGTKRSPVR---SVEERKEEYDRARARIFSGPSSPNSEDTLTQVSTDMKNIGFN 197
                 N+        R   S+EER+EEY R R RIF+  +  N    L  +  + +  G +
Sbjct:   265 DRDDNQIRVPLQDGRRSKSIEEREEEYQRVRERIFARETGQNGY--LNDIRGNRE--GLS 320

Query:   198 RDEREIVRNSITDAE 212
             R      R S TD+E
Sbjct:   321 RTSSS--RQSSTDSE 333

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|H9L0H9 H9L0H9 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 201 (75.8 bits), Expect = 5.5e-14, Sum P(2) = 5.5e-14
 Identities = 64/225 (28%), Positives = 118/225 (52%)

Query:    24 FLVEALQ-NPRHRLTILRMELDIQRFLQNPDQQHFEFQHFP--TSYLRLAAHRVSQHYGL 80
             FLV  L+ NPR R+ +L++E +I  F+ + + Q   F+ FP  TSY R+  HRV+ ++G+
Sbjct:   158 FLVNTLKKNPRDRMMLLKLEQEILEFISDSNNQ---FKKFPQMTSYHRMLLHRVAAYFGM 214

Query:    81 VTMVQENGIEGLGNRILVRKTAESKYPAVRLSE-IPAKQSEESDK---LEKIKIAIRRRP 136
                  ++ ++  G  +++ KT+ ++ P  R SE I  +++ E  +   L++   ++ R  
Sbjct:   215 -----DHNVDQTGKAVIINKTSNTRIPEQRFSEHIKDEKNAEFPQRFILKRDDTSMDRDD 269

Query:   137 NAGCVNGANETGTKRSPVRSVEERKEEYDRARARIFSGPSSPNSEDTLTQVSTDMKNIGF 196
             N   +    + G +RS  +S+EER+EEY RAR RIF+  +  N   T +++S +  +  +
Sbjct:   270 NQ--IRLPLQDG-RRS--KSIEEREEEYQRARERIFARETGQNGYLTDSRMSKE--SFAY 322

Query:   197 N-RDEREIVRNSITDAEKIISIRDGAGLSRVAIFRDREKDRTDPD 240
             + +  R+I R +     +    R  +  S +     R    TD D
Sbjct:   323 SPQKRRQIFRANRDGLSRASGSRQSSTESEIKSLEPRPWSSTDSD 367

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E1C2S9 R3HDM1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 204 (76.9 bits), Expect = 7.7e-14, Sum P(2) = 7.7e-14
 Identities = 66/238 (27%), Positives = 113/238 (47%)

Query:    24 FLVEALQN-PRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVT 82
             FLV  L+N PR R+ +L++E +I  F+ N +    +F    TSY R+  HRV+ ++GL  
Sbjct:   156 FLVNTLKNNPRDRMMLLKLEQEILDFIGNNEAPRKKFPPM-TSYHRMLLHRVAAYFGL-- 212

Query:    83 MVQENGIEGLGNRILVRKTAESKYPAVRLSEIPAKQSEESDKLEKIKIAIRRRPNAGCVN 142
                E+ ++  G  ++V KT+ ++ P  +  E    + E+SD  +K  I   +R N+    
Sbjct:   213 ---EHNVDQSGKSVIVNKTSNTRIPDQKFCE--HIKDEKSDDFQKRYIL--KRDNSSLDK 265

Query:   143 GANETGTKRSPVR---SVEERKEEYDRARARIFSGPSSPNSEDTLTQVSTDMKNIGFNRD 199
               N+   +    R   S+EER+EEY RAR RIF+  S  + E+  T      +     + 
Sbjct:   266 DDNQMRIRLKDDRRSKSIEEREEEYQRARERIFAQDSLCSQENYFTDKRIQEEETNSTQQ 325

Query:   200 EREIVRNSITDAEKIISIRDGAGLSRVAIFRDREKDRTDPDYD-RSYERSLPTNQGFS 256
              R+I R +   + +  +    +  + +     R    TD D   RS + ++     FS
Sbjct:   326 RRQIFRINKETSGRSTNSHQSSTENELKYCEPRPWSSTDSDSSIRSLKPAVTKASSFS 383

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1MEA2 R3HDM2 "R3H domain-containing protein 2" [Bos taurus (taxid:9913)]

 Score = 187 (70.9 bits), Expect = 9.3e-14, Sum P(2) = 9.3e-14
 Identities = 58/195 (29%), Positives = 100/195 (51%)

Query:    24 FLVEALQ-NPRHRLTILRMELDIQRFLQNPDQQHFEFQHFP--TSYLRLAAHRVSQHYGL 80
             FLV  L+ NPR R+ +L++E +I  F+ + + Q   F+ FP  TSY R+  HRV+ ++G+
Sbjct:   157 FLVNTLKKNPRDRMMLLKLEQEILDFINDNNNQ---FKKFPQMTSYHRMLLHRVAAYFGM 213

Query:    81 VTMVQENGIEGLGNRILVRKTAESKYPAVRLSEIPAKQSEESDKLEKIKIAIRRRPNAGC 140
                  ++ ++  G  +++ KT+ ++ P  R SE   K  + ++  ++    I +R +A  
Sbjct:   214 -----DHNVDQTGKAVIINKTSNTRIPEQRFSE-HIKDEKNTEFQQRF---ILKRDDASM 264

Query:   141 VNGANETGTKRSPVR---SVEERKEEYDRARARIFSGPSSPNSEDTLTQVSTDMKNIGFN 197
                 N+        R   S+EER+EEY R R RIF+  +  N    L  +  + +  G +
Sbjct:   265 DRDDNQIRVPLQDGRRSKSIEEREEEYQRVRERIFARETGQNGY--LNDIRGNRE--GLS 320

Query:   198 RDEREIVRNSITDAE 212
             R      R S TD+E
Sbjct:   321 RTSSS--RQSSTDSE 333

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|A0JNC2 R3HDM2 "R3H domain-containing protein 2" [Bos taurus (taxid:9913)]

 Score = 187 (70.9 bits), Expect = 9.3e-14, Sum P(2) = 9.3e-14
 Identities = 58/195 (29%), Positives = 100/195 (51%)

Query:    24 FLVEALQ-NPRHRLTILRMELDIQRFLQNPDQQHFEFQHFP--TSYLRLAAHRVSQHYGL 80
             FLV  L+ NPR R+ +L++E +I  F+ + + Q   F+ FP  TSY R+  HRV+ ++G+
Sbjct:   157 FLVNTLKKNPRDRMMLLKLEQEILDFINDNNNQ---FKKFPQMTSYHRMLLHRVAAYFGM 213

Query:    81 VTMVQENGIEGLGNRILVRKTAESKYPAVRLSEIPAKQSEESDKLEKIKIAIRRRPNAGC 140
                  ++ ++  G  +++ KT+ ++ P  R SE   K  + ++  ++    I +R +A  
Sbjct:   214 -----DHNVDQTGKAVIINKTSNTRIPEQRFSE-HIKDEKNTEFQQRF---ILKRDDASM 264

Query:   141 VNGANETGTKRSPVR---SVEERKEEYDRARARIFSGPSSPNSEDTLTQVSTDMKNIGFN 197
                 N+        R   S+EER+EEY R R RIF+  +  N    L  +  + +  G +
Sbjct:   265 DRDDNQIRVPLQDGRRSKSIEEREEEYQRVRERIFARETGQNGY--LNDIRGNRE--GLS 320

Query:   198 RDEREIVRNSITDAE 212
             R      R S TD+E
Sbjct:   321 RTSSS--RQSSTDSE 333

GO:0005634 "nucleus" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

ZFIN|ZDB-GENE-030131-7119 r3hdm1 "R3H domain containing 1" [Danio rerio (taxid:7955)]

 Score = 194 (73.4 bits), Expect = 8.8e-13, Sum P(2) = 8.8e-13
 Identities = 63/219 (28%), Positives = 114/219 (52%)

Query:    24 FLVEALQN-PRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVT 82
             FLV  L+N PR R+ +L++E DI  F+ N + Q  +F    TSY R+  HRV+ ++GL  
Sbjct:    97 FLVNTLKNNPRDRMMLLKLEQDILDFISNIESQKRKFPPM-TSYHRMLLHRVAAYFGL-- 153

Query:    83 MVQENGIEGLGNRILVRKTAESKYPAVRLSEIPAKQSEESDKLEKIKIAIRRRPNAGCVN 142
                ++ ++  G  +++ KT+ ++ P  + SE    + +++D  +K  I  R   +    +
Sbjct:   154 ---DHNVDQTGKSVIINKTSNTRIPDQKFSE--HIKDDKTDDFQKRYILKRDNSSLDQDD 208

Query:   143 GANETGTKRSP-VRSVEERKEEYDRARARIFSGPSSPNSEDTLTQVSTDMKNIGFNRDER 201
             G      K     +S+EER+EEY RAR RIF+       +D   ++   +  + F+R + 
Sbjct:   209 GRLRMRLKDDRRSKSIEEREEEYQRARDRIFA-------QDV--RLFNKIHFV-FSRIQE 258

Query:   202 EIVRNSITDAEKIISIRDG-AGLSRVAIFRDREKDRTDP 239
             ++   +     +I  +RDG +G SR +   + +K  +DP
Sbjct:   259 DMTFINTQQRRQIFRLRDGRSGNSRQSSSENEQK-YSDP 296

GO:0003676 "nucleic acid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	348
cd02642	63	cd02642, R3H_encore_like, R3H domain of encore-lik	8e-18
pfam12752	57	pfam12752, SUZ, SUZ domain	4e-11
smart00393	79	smart00393, R3H, Putative single-stranded nucleic	1e-05
cd02325	59	cd02325, R3H, R3H domain	3e-05

>gnl|CDD|100071 cd02642, R3H_encore_like, R3H domain of encore-like and DIP1-like proteins

 Score = 76.1 bits (188), Expect = 8e-18
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 5/68 (7%)

Query: 34  HRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVTMVQENGIEGLG 93
            RL +L++E D+  F+++  +Q  E      SY RL AHRV+Q+YGL   V  +G    G
Sbjct: 1   DRLFVLKLEKDLLAFIKDSTRQSLELPP-MNSYYRLLAHRVAQYYGLDHNVDNSG----G 55

Query: 94  NRILVRKT 101
             ++V KT
Sbjct: 56  KCVIVNKT 63

Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H domain is a potential regulator of DBF1 activity in stress responses. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner. Length = 63

>gnl|CDD|221752 pfam12752, SUZ, SUZ domain

 Score = 57.3 bits (139), Expect = 4e-11
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 6/57 (10%)

Query: 126 EKIKIAIRRRPNAGCVNG------ANETGTKRSPVRSVEERKEEYDRARARIFSGPS 176
           EK K+ I +RP+ G            + G K    +S+EER+ EY  AR RIF   S
Sbjct: 1   EKPKMKILKRPSKGGSESGSSGSSPGDKGAKDRKAKSLEEREAEYAEARERIFGSSS 57

The SUZ domain is a conserved RNA-binding domain found in eukaryotes and enriched in positively charged amino acids. It was first characterized in the C.elegans protein Szy-20 where it has been shown to bind RNA and allow their localization to the centrosome. Warning- the domain has a compositionally biased character. Length = 57

>gnl|CDD|214647 smart00393, R3H, Putative single-stranded nucleic acids-binding domain

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 21 VDPFLVEAL-QNPRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYG 79
            P  ++AL   PR R  ++ +EL+I RF     ++  E      SY R   H +++ YG
Sbjct: 3  FLPVTLDALSYRPRRREELIELELEIARF-VKSTKESVELPP-MNSYERKIVHELAEKYG 60

Query: 80 L 80
          L
Sbjct: 61 L 61

Length = 79

>gnl|CDD|100064 cd02325, R3H, R3H domain

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 38  ILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRIL 97
               E +++ F ++   +  E      SY R   H ++++YGL +  +  G      R++
Sbjct: 1   REEREEELEAFAKDAAGKSLELPP-MNSYERKLIHDLAEYYGLKSESEGEGPN---RRVV 56

Query: 98  VRK 100
           + K
Sbjct: 57  ITK 59

The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. R3H domains are found in proteins together with ATPase domains, SF1 helicase domains, SF2 DEAH helicase domains, Cys-rich repeats, ring-type zinc fingers, and KH domains. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner. Length = 59

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	348
KOG2953	432	consensus mRNA-binding protein Encore [RNA process	100.0
cd02642	63	R3H_encore_like R3H domain of encore-like and DIP1	99.82
PF12752	59	SUZ: SUZ domain; InterPro: IPR024771 The SUZ domai	99.45
PF01424	63	R3H: R3H domain; InterPro: IPR001374 The R3H motif	99.28
cd02325	59	R3H R3H domain. The name of the R3H domain comes f	99.17
smart00393	79	R3H Putative single-stranded nucleic acids-binding	99.12
cd02641	60	R3H_Smubp-2_like R3H domain of Smubp-2_like protei	98.95
cd06006	59	R3H_unknown_2 R3H domain of a group of fungal prot	98.92
cd02646	58	R3H_G-patch R3H domain of a group of fungal and pl	98.9
cd02640	60	R3H_NRF R3H domain of the NF-kappaB-repression fac	98.56
cd06007	59	R3H_DEXH_helicase R3H domain of a group of protein	98.52
cd02636	61	R3H_sperm-antigen R3H domain of a group of metazoa	98.51
cd02643	74	R3H_NF-X1 R3H domain of the X1 box binding protein	98.49
cd02644	67	R3H_jag R3H domain found in proteins homologous to	97.24
cd02639	60	R3H_RRM R3H domain of mainly fungal proteins which	96.87
cd02645	60	R3H_AAA R3H domain of a group of proteins with unk	96.4
cd02638	62	R3H_unknown_1 R3H domain of a group of eukaryotic	95.73
cd02637	65	R3H_PARN R3H domain of Poly(A)-specific ribonuclea	89.54

>KOG2953 consensus mRNA-binding protein Encore [RNA processing and modification]

Probab=100.00  E-value=3.8e-43  Score=348.54  Aligned_cols=312  Identities=41%  Similarity=0.536  Sum_probs=272.6

Q ss_pred             hhhhccCCCCchHHHHHHhcCchhHHHHHHHHHHHHHHhcCCCccceecCCCCChHHHHHHHHhhhhhccceeeecc---
Q 018993           11 AAIVNERESMVDPFLVEALQNPRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVTMVQEN---   87 (348)
Q Consensus        11 ~~~~~~~~~~vd~~L~eAL~npkDRl~lLrlE~di~~FI~d~~~~~lel~pmpnSY~RLLvHRvA~yygL~h~v~d~---   87 (348)
                      .+.+-+.+..+|.|++|||+|||+|++|+++|.+|.+|+++...++++|+++++||+|++.||||++|+|.+.+.+.   
T Consensus        86 ~~~~~p~e~~~dy~~ve~~qnpR~~~~lsR~El~~~~~~Q~~~~qqt~~q~~~ts~~~~~~~rvaq~y~l~T~~~p~~~~  165 (432)
T KOG2953|consen   86 QANKIPNEQAVDYFLVEALQNPRHRLTLSRKELDIQCQFQGPVQQQTEFQNYPTSYLRLAAHRVAQHYGLATTGEPSYIS  165 (432)
T ss_pred             ccccCchhhcccHHHHhhhhcchhhhhhhcccchhhhhhcCcccccccCCCccccchhhhhccccccccccccccccccc
Confidence            34466788899999999999999999999999999999999999999999999999999999999999999988766   


Q ss_pred             cccCCccEEEEEecCCCCCCcccccccccCCcCcCchhhhhhhhhccCCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHH
Q 018993           88 GIEGLGNRILVRKTAESKYPAVRLSEIPAKQSEESDKLEKIKIAIRRRPNAGCVNG-ANETGTKRSPVRSVEERKEEYDR  166 (348)
Q Consensus        88 ~~Dgs~~~Ivv~KT~~triP~vrLsdl~~~~~~~s~~~~~~K~~ImkR~~k~s~~~-~~~~~~k~~~~kS~EEREeeY~r  166 (348)
                      +.|+...+|+++|+.+++.|.++|++++.+.+.+++..+..|+.|.-|+.+++... .++.+......+|+||||++|.+
T Consensus       166 ~~~p~eqR~l~~k~~~s~~P~~~~~~~P~ssp~~~~~~~~~~~~~sp~p~~g~G~~~~~p~~~~~~~~~S~~~~kq~yd~  245 (432)
T KOG2953|consen  166 GIDPYEQRILVTKTGESRFPGVSLSEIPVSSPSSNGWSEQRKGDISPRPTSGGGVSLSSPSNPQVTLLRSVEERKQEYDK  245 (432)
T ss_pred             ccCchhccccccccccccCCchhhccccccCccccccccccccccCCCCCCCCcccccCCcCCCccccccchhhhhhhhh
Confidence            57888899999999999999999999999766667889999999999988765443 22333344578999999999999


Q ss_pred             HHHhhcCCCCCCCCccccccccCC---CCC--CCCCCchhhhhcc-cccccccccccCCCCCCCceeeecccccccCCCc
Q 018993          167 ARARIFSGPSSPNSEDTLTQVSTD---MKN--IGFNRDEREIVRN-SITDAEKIISIRDGAGLSRVAIFRDREKDRTDPD  240 (348)
Q Consensus       167 AReRIF~~~~s~d~~~~~~~~~~~---~~~--~~~~r~e~~~~~~-~~~~~ek~~~~r~~~~~~rvAi~RdrekDr~DPD  240 (348)
                      ||+|||+.....+++|++...++.   ..+  ++.+|.+.+.+.| .++.-+++...|+.|+.+||||+|||||||+|||
T Consensus       246 ~r~r~g~~~~~~~s~Dss~q~~p~~~~~~~g~~~~~~~~~p~~~N~~Pv~~~~~g~~~~~gps~~v~~nr~rr~~ry~p~  325 (432)
T KOG2953|consen  246 ARGRIGSKPVTNDSKDSSSQQPPQNYQSGNGDPRLSRLEQPVSYNSPPLMHGPNGITRESGPSPRVAGNRDRRPDRYDPD  325 (432)
T ss_pred             hhccccCccccccCcccccccCCccccCCCCccccccCCcccccCCCcccccCCCcccCCCCCcccccccccchhhcCcc
Confidence            999999999999999999887765   444  5689999999888 7888889999999999999999999999999999


Q ss_pred             hhhh-----ccCCCCCCCCCCCCCCCCcccCCCccccCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 018993          241 YDRS-----YERSLPTNQGFSLPPFNMQKVQLPFMQYDTGFPQFSQIPRTQASLSFRPPSSPVMSPYCAVGPNQTSVEAA  315 (348)
Q Consensus       241 ydR~-----y~~~~~~~~~f~~~~~~~q~~~~p~~~y~~~f~q~~~~~~~~~~~~~~~~~~~~m~p~~~~~~~~~~~~~~  315 (348)
                      |||+     |-+.+|||+.|+..++   .+.+|+  +...|+...+.+ +        ++++.|+||..       -+++
T Consensus       326 ~dr~~~~~~yv~~~Pp~q~~~~~~~---ql~~~~--~~i~~~~~pq~~-~--------~~n~~~s~~s~-------~a~~  384 (432)
T KOG2953|consen  326 YDRSCGFVRYVTMLPPGQTFMQYQK---QLHTPY--HKIPFPNDPQGN-G--------GDNPARSEASH-------LAAK  384 (432)
T ss_pred             cccCCCCcceeccCCCccccccccc---ccCCcc--cccccCCCCcCC-C--------CCCcccccccc-------cccc
Confidence            9999     2299999999999987   356677  888888854433 1        66799999933       4899


Q ss_pred             cccCC-CccccccCchhHhhhhhhhhhhh
Q 018993          316 YMQWP-SAAMMYAHSYEQFRQAAFQVFFG  343 (348)
Q Consensus       316 y~~~p-~~~m~y~h~~~~~~~~~~~~~~~  343 (348)
                      |++|| .|.|+|+|....+++..+++.|-
T Consensus       385 yt~~p~~p~~~~a~n~~~~~~~~~ras~~  413 (432)
T KOG2953|consen  385 YTVLPAFPSMSYASNANEKKNGNSRASFK  413 (432)
T ss_pred             eeeccccccchhccchhhhhcCceeeecc
Confidence            99999 99999999999999999999874

>cd02642 R3H_encore_like R3H domain of encore-like and DIP1-like proteins

Probab=99.82  E-value=2.9e-20  Score=142.05  Aligned_cols=63  Identities=41%  Similarity=0.711  Sum_probs=58.5

Q ss_pred             hHHHHHHHHHHHHHHhcCCCccceecCCCCChHHHHHHHHhhhhhccceeeecccccCCccEEEEEec
Q 018993           34 HRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRKT  101 (348)
Q Consensus        34 DRl~lLrlE~di~~FI~d~~~~~lel~pmpnSY~RLLvHRvA~yygL~h~v~d~~~Dgs~~~Ivv~KT  101 (348)
                      ||++||+||++|++||+++..+.++|+|| |||+|||+|+||+||||.|++++.+    +.+|+|.||
T Consensus         1 dr~~~l~~E~~i~~Fi~~~~~~~~~f~pm-~sy~RllvH~la~~~gL~s~s~~~~----~r~vvv~kt   63 (63)
T cd02642           1 DRLFVLKLEKDLLAFIKDSTRQSLELPPM-NSYYRLLAHRVAQYYGLDHNVDNSG----GKCVIVNKT   63 (63)
T ss_pred             CchHHHHHHHHHHHHHhCCCCCeeEcCCC-CcHHHHHHHHHHHHhCCeeEeecCC----ceEEEEEeC
Confidence            79999999999999999997788999999 9999999999999999999997643    578999987

Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H domain is a potential regulator of DBF1 activity in stress responses. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.

>PF12752 SUZ: SUZ domain; InterPro: IPR024771 The SUZ domain is a conserved RNA-binding domain found in eukaryotes and enriched in positively charged amino acids

Probab=99.45  E-value=6.5e-14  Score=106.18  Aligned_cols=50  Identities=42%  Similarity=0.677  Sum_probs=37.5

Q ss_pred             hhhhhhccCCCCCCCCC--------CCCCCCCCCCCCCHHHHHHHHHHHHHhhcCCCC
Q 018993          127 KIKIAIRRRPNAGCVNG--------ANETGTKRSPVRSVEERKEEYDRARARIFSGPS  176 (348)
Q Consensus       127 ~~K~~ImkR~~k~s~~~--------~~~~~~k~~~~kS~EEREeeY~rAReRIF~~~~  176 (348)
                      .++++||||+++++...        .+..+.+....||+||||++|++||+|||++++
T Consensus         2 ~p~~~IlkRp~~~~~~~~~~~~~~~~~~~~~~~~~~kSlEERE~eY~~AR~RIFg~~~   59 (59)
T PF12752_consen    2 KPKRKILKRPSKGSSSSDSGSSGSSPNSSSRKKRPSKSLEEREAEYAEARARIFGSSE   59 (59)
T ss_pred             CCCCeEecCCCCCCCcccccccccCCCcccccccccCCHHHHHHHHHHHHHHHhCCCC
Confidence            46788999986554322        112234568899999999999999999999864

It was first characterised in the Caenorhabditis elegans protein SZY-20 where it has been shown to bind RNA and allow their localization to the centrosome [].

>PF01424 R3H: R3H domain; InterPro: IPR001374 The R3H motif: a domain that binds single-stranded nucleic acids

Probab=99.28  E-value=7.4e-12  Score=94.34  Aligned_cols=63  Identities=25%  Similarity=0.471  Sum_probs=52.7

Q ss_pred             hHHHHHHHHHHHHHHhcCCCccceecCCCCChHHHHHHHHhhhhhccceeeecccccCCccEEEEEec
Q 018993           34 HRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRKT  101 (348)
Q Consensus        34 DRl~lLrlE~di~~FI~d~~~~~lel~pmpnSY~RLLvHRvA~yygL~h~v~d~~~Dgs~~~Ivv~KT  101 (348)
                      .|..|+++++++++|+.++.. .++|+|| |+|+|++||.+|++|||.|.+.+.+   ...+|+|+||
T Consensus         1 r~~~l~~~~~~~~~~~~~~~~-~~~f~pm-~~~~R~~iH~~a~~~gL~s~S~g~~---~~R~vvv~k~   63 (63)
T PF01424_consen    1 RREELEKIEEKLIEFFLSSGE-SLEFPPM-NSFERKLIHELAEYYGLKSKSEGEG---PNRRVVVSKT   63 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSS-EEEEEC---SHHHHHHHHHHHHCTEEEEEESSS---SSSEEEEEES
T ss_pred             ChHHHHHHHHHHHHHHHcCCC-EEEECCC-CHHHHHHHHHHHHHCCCEEEEecCC---CCeEEEEEeC
Confidence            367899999999999976665 7999999 9999999999999999999997643   4467999886

The most prominent feature of the R3H motif is the presence of an invariant arginine residue and a highly conserved histidine residue that are separated by three residues. The motif also displays a conserved pattern of hydrophobic residues, prolines and glycines. The R3H motif is present in proteins from a diverse range of organisms that includes Eubacteria, green plants, fungi and various groups of metazoans. Intriguingly, it has not yet been identified in Archaea and Escherichia coli. The sequences that contain the R3H domain, many of which are hypothetical proteins predicted from genome sequencing projects, can be grouped into eight families on the basis of similarities outside the R3H region. Three of the families contain ATPase domains either upstream (families II and VII) or downstream of the R3H domain (family VIII). The N-terminal part of members of family VII contains an SF1 helicase domain5. The C-terminal part of family VIII contains an SF2 DEAH helicase domain5. The ATPase domain in the members of family II is similar to the stage-III sporulation protein AA (S3AA_BACSU), the proteasome ATPase, bacterial transcription-termination factor r and the mitochondrial F1-ATPase b subunit (the F5 helicase family5). Family VI contains Cys-rich repeats6, as well as a ring-type zinc finger upstream of the R3H domain. JAG bacterial proteins (family I) contain a KH domain N-terminal to the R3H domain. The functions of other domains in R3H proteins support the notion that the R3H domain might be involved in interactions with single-stranded nucleic acids [].; GO: 0003676 nucleic acid binding; PDB: 1WHR_A 1MSZ_A 1UG8_A 3GKU_B 2CPM_A.

>cd02325 R3H R3H domain

Probab=99.17  E-value=5.4e-11  Score=85.72  Aligned_cols=59  Identities=22%  Similarity=0.412  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHhcCCCccceecCCCCChHHHHHHHHhhhhhccceeeecccccCCccEEEEEe
Q 018993           38 ILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRK  100 (348)
Q Consensus        38 lLrlE~di~~FI~d~~~~~lel~pmpnSY~RLLvHRvA~yygL~h~v~d~~~Dgs~~~Ivv~K  100 (348)
                      ++++|+.|++|+.+.....++|+|| |+|+|.++|++|++|||.+.+.+.+   ...+|+|.+
T Consensus         1 ~~~~~~~l~~f~~~~~~~~~~~~p~-~~~~R~~vH~la~~~~L~s~s~g~~---~~r~v~i~~   59 (59)
T cd02325           1 REEREEELEAFAKDAAGKSLELPPM-NSYERKLIHDLAEYYGLKSESEGEG---PNRRVVITK   59 (59)
T ss_pred             ChHHHHHHHHHHHhhcCCeEEcCCC-CHHHHHHHHHHHHHCCCEEEEecCC---CCcEEEEeC
Confidence            4689999999999996678999999 9999999999999999999997643   345677653

The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. R3H domains are found in proteins together with ATPase domains, SF1 helicase domains, SF2 DEAH helicase domains, Cys-rich repeats, ring-type zinc fingers, and KH domains. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.

>smart00393 R3H Putative single-stranded nucleic acids-binding domain

Probab=99.12  E-value=7.6e-11  Score=93.19  Aligned_cols=74  Identities=30%  Similarity=0.597  Sum_probs=62.6

Q ss_pred             HHHHHHhc-CchhHHHHHHHHHHHHHHhcCCCccceecCCCCChHHHHHHHHhhhhhccceeeecccccCCccEEEEEec
Q 018993           23 PFLVEALQ-NPRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRKT  101 (348)
Q Consensus        23 ~~L~eAL~-npkDRl~lLrlE~di~~FI~d~~~~~lel~pmpnSY~RLLvHRvA~yygL~h~v~d~~~Dgs~~~Ivv~KT  101 (348)
                      +++++.+. +++.+..|++++.++.+|+..... .++|+|| |+|+|.++|++|+.|||.|.+.+.|   ...+|+|.|+
T Consensus         5 ~~~~d~~~~~~~~~~~l~~~~~~~~~~v~~~~~-~~~~~pm-~~~~R~~iH~~a~~~~l~s~S~g~g---~~R~vvv~~~   79 (79)
T smart00393        5 PVTLDALSYRPRRREELIELELEIARFVKSTKE-SVELPPM-NSYERKIVHELAEKYGLESESFGEG---PKRRVVISKK   79 (79)
T ss_pred             eEEEECCccCHHHHHHHHHHHHHHHHHHhccCC-eEEcCCC-CHHHHHHHHHHHHHcCCEEEEEcCC---CCcEEEEEeC
Confidence            34455664 789999999999999999987765 6999999 9999999999999999999997754   3367888764

>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins

Probab=98.95  E-value=1.9e-09  Score=82.15  Aligned_cols=58  Identities=24%  Similarity=0.411  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHhcCCCccceecCC-CCChHHHHHHHHhhhhhccceeeecccccCCccEEEEEe
Q 018993           39 LRMELDIQRFLQNPDQQHFEFQH-FPTSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRK  100 (348)
Q Consensus        39 LrlE~di~~FI~d~~~~~lel~p-mpnSY~RLLvHRvA~yygL~h~v~d~~~Dgs~~~Ivv~K  100 (348)
                      .++|+.|.+||+++....++||| | |+++|.+||.||+.|||.|...+.|   ....|+|.|
T Consensus         2 ~~~~~~i~~F~~~~~~~~l~F~p~l-s~~eR~~vH~lA~~~gL~s~S~G~g---~~R~v~v~k   60 (60)
T cd02641           2 KHLKAMVKAFMKDPKATELEFPPTL-SSHDRLLVHELAEELGLRHESTGEG---SDRVITVSK   60 (60)
T ss_pred             hhHHHHHHHHHcCCCcCcEECCCCC-CHHHHHHHHHHHHHcCCceEeeCCC---CceEEEeeC
Confidence            46899999999999877899999 9 9999999999999999999987643   334566654

Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.

>cd06006 R3H_unknown_2 R3H domain of a group of fungal proteins with unknown function

Probab=98.92  E-value=2.9e-09  Score=81.30  Aligned_cols=57  Identities=21%  Similarity=0.463  Sum_probs=50.4

Q ss_pred             HHHHHHHHHhcCCCccceecCCCCChHHHHHHHHhhhhhccceeeecccccCCccEEEEEe
Q 018993           40 RMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRK  100 (348)
Q Consensus        40 rlE~di~~FI~d~~~~~lel~pmpnSY~RLLvHRvA~yygL~h~v~d~~~Dgs~~~Ivv~K  100 (348)
                      ++|+.|.+||+|.....+.|+|| |+++|-+||-||++|||.++..|.+++   .+|+|.|
T Consensus         3 ~~E~~l~~fv~d~~~~~~~f~pM-~~~~R~~vHdla~~~gl~SeS~d~Ep~---R~V~v~k   59 (59)
T cd06006           3 QIESTLRKFINDKSKRSLRFPPM-RSPQRAFIHELAKDYGLYSESQDPEPK---RSVFVKK   59 (59)
T ss_pred             hHHHHHHHHHhCCCCCceeCCCC-CHHHHHHHHHHHHHcCCeeEecCCCCC---cEEEEeC
Confidence            79999999999987778999999 999999999999999999999876553   4577764

The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.

>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain

Probab=98.90  E-value=3e-09  Score=80.16  Aligned_cols=58  Identities=21%  Similarity=0.329  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHhcCCCccceecCCCCChHHHHHHHHhhhhhccceeeecccccCCccEEEEEe
Q 018993           38 ILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRK  100 (348)
Q Consensus        38 lLrlE~di~~FI~d~~~~~lel~pmpnSY~RLLvHRvA~yygL~h~v~d~~~Dgs~~~Ivv~K  100 (348)
                      |-++|++|.+|+.++. ..+.|||| ++++|.+||+||+.|||.+...+.|   ....|+|+|
T Consensus         1 ~~~i~~~i~~F~~~~~-~~~~fppm-~~~~R~~vH~lA~~~~L~S~S~G~g---~~R~v~v~k   58 (58)
T cd02646           1 IEDIKDEIEAFLLDSR-DSLSFPPM-DKHGRKTIHKLANCYNLKSKSRGKG---KKRFVTVTK   58 (58)
T ss_pred             ChHHHHHHHHHHhCCC-ceEecCCC-CHHHHHHHHHHHHHcCCcccccccC---CceEEEEEC
Confidence            3478999999999885 57999999 9999999999999999999987643   445688875

The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.

>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF)

Probab=98.56  E-value=1.7e-07  Score=71.81  Aligned_cols=57  Identities=23%  Similarity=0.374  Sum_probs=47.5

Q ss_pred             HHHHHHHHHhcCCCccceecCC-CCChHHHHHHHHhhhhhccceeeecccccCCccEEEEEe
Q 018993           40 RMELDIQRFLQNPDQQHFEFQH-FPTSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRK  100 (348)
Q Consensus        40 rlE~di~~FI~d~~~~~lel~p-mpnSY~RLLvHRvA~yygL~h~v~d~~~Dgs~~~Ivv~K  100 (348)
                      .+++.|.+|+.+.....+.||| | ++++|.+||.||.-+||.|.....   |....|+|+|
T Consensus         3 ~~~~~i~~F~~s~~~~~l~f~p~l-t~~eR~~vH~~a~~~gL~s~S~G~---g~~R~v~v~k   60 (60)
T cd02640           3 DYRQIIQNYAHSDDIRDMVFSPEF-SKEERALIHQIAQKYGLKSRSYGS---GNDRYLVISK   60 (60)
T ss_pred             hHHHHHHHHHcCCccceEEcCCCC-CHHHHHHHHHHHHHcCCceeeEeC---CCCeEEEEeC
Confidence            5789999999998777899999 9 999999999999999999998653   2334566654

NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.

>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases

Probab=98.52  E-value=2.1e-07  Score=71.04  Aligned_cols=57  Identities=23%  Similarity=0.429  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHhcCCCccceecCC-CCChHHHHHHHHhhhhhccceeeecccccCCccEEEEEe
Q 018993           39 LRMELDIQRFLQNPDQQHFEFQH-FPTSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRK  100 (348)
Q Consensus        39 LrlE~di~~FI~d~~~~~lel~p-mpnSY~RLLvHRvA~yygL~h~v~d~~~Dgs~~~Ivv~K  100 (348)
                      +.+++.|.+|+++. ...++||| | |+++|.+||+||..+||.|.....   |....|+|.|
T Consensus         2 i~i~~~i~~F~~~~-~~~l~Fpp~l-s~~eR~~vH~~a~~~gL~s~S~G~---g~~R~v~v~K   59 (59)
T cd06007           2 IAINKALEDFRASD-NEEYEFPSSL-TNHERAVIHRLCRKLGLKSKSKGK---GSNRRLSVYK   59 (59)
T ss_pred             ccHHHHHHHHHcCc-ccEEEcCCCC-CHHHHHHHHHHHHHcCCCceeecC---CCCeEEEEeC
Confidence            45789999999988 67899999 8 999999999999999999997543   3334566654

The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.

>cd02636 R3H_sperm-antigen R3H domain of a group of metazoan proteins that is related to the sperm-associated antigen 7

Probab=98.51  E-value=2.4e-07  Score=71.33  Aligned_cols=58  Identities=19%  Similarity=0.359  Sum_probs=49.0

Q ss_pred             HHHHHHHHHhcCCCccceecCCCCChHHHHHHHHhhhhhccceeeecccccCCccEEEEEe
Q 018993           40 RMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRK  100 (348)
Q Consensus        40 rlE~di~~FI~d~~~~~lel~pmpnSY~RLLvHRvA~yygL~h~v~d~~~Dgs~~~Ivv~K  100 (348)
                      ++|+.+.+||+|...+..+|+|| |+|+|-+||.+|+..||.+.....  ++...+|+|.|
T Consensus         3 ~~e~~~~~f~~d~~~~~~~l~pM-~~~eRkivHDv~~~~Gl~S~S~Ge--ee~~R~VVv~~   60 (61)
T cd02636           3 SMEKEVSKFIKDSVRTREKFQPM-DKVERSIVHDVAEVAGLTSFSFGE--DEVDRYVMIFK   60 (61)
T ss_pred             hHHHHHHHHhhcccccccccCCC-CHHHHHHHHHHHHhcCceeEecCC--CCCceEEEEec
Confidence            68999999999988788899999 999999999999999999988643  22335677764

The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.

>cd02643 R3H_NF-X1 R3H domain of the X1 box binding protein (NF-X1) and related proteins

Probab=98.49  E-value=2.4e-07  Score=73.24  Aligned_cols=63  Identities=11%  Similarity=0.305  Sum_probs=52.1

Q ss_pred             hhHHHHHHHHHHHHHHhcCCC-----ccceecCCCCChHHHHHHHHhhhhhccceeeecccccCCccEEEEE
Q 018993           33 RHRLTILRMELDIQRFLQNPD-----QQHFEFQHFPTSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVR   99 (348)
Q Consensus        33 kDRl~lLrlE~di~~FI~d~~-----~~~lel~pmpnSY~RLLvHRvA~yygL~h~v~d~~~Dgs~~~Ivv~   99 (348)
                      ++--|+.++|+.|..|+.+..     ...+.|+|| |+|+|-+||-+|++|||.+...+.++.   .+|+|+
T Consensus         6 ~~~~~~~~vE~~l~~la~~~~~~~~~~~~~~l~PM-~~~eR~iIH~la~~~~l~S~S~G~ep~---R~VvI~   73 (74)
T cd02643           6 KDPKFVKDVEKDLIELVESVNKGKQTSRSHSFPPM-NREKRRIVHELAEHFGIESVSYDQEPK---RNVVAT   73 (74)
T ss_pred             HCHHHHHHHHHHHHHHHHHHHhccccCCeeECCCC-CHHHHHHHHHHHhhCCCEEEecCCCCC---ceEEEe
Confidence            445699999999999999643     246899999 999999999999999999999875543   467775

Human NF-X1 is a transcription factor that regulates the expression of class II major histocompatibility complex (MHC) genes. The Drosophila homolog shuttle craft (STC) has been shown to be a DNA- or RNA-binding protein required for proper axon guidance in the central nervous system and, the yeast homolog FAP1 encodes a dosage suppressor of rapamycin toxicity. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.

>cd02644 R3H_jag R3H domain found in proteins homologous to Bacillus subtilus Jag, which is associated with SpoIIIJ

Probab=97.24  E-value=0.0012  Score=51.41  Aligned_cols=61  Identities=13%  Similarity=0.211  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHHhcCCCccceecCCCCChHHHHHHHHhhhhhc-cceeeecccccCCccEEEEEe
Q 018993           35 RLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYG-LVTMVQENGIEGLGNRILVRK  100 (348)
Q Consensus        35 Rl~lLrlE~di~~FI~d~~~~~lel~pmpnSY~RLLvHRvA~yyg-L~h~v~d~~~Dgs~~~Ivv~K  100 (348)
                      .-.|.+|-+.+.+.+..... .+.|+|| |+|+|-+||.++.-|. |.+...+.|   ...+|+|.+
T Consensus         5 ~~~L~~~A~~~a~~v~~tg~-~~~l~PM-~~~eRrivH~~~~~~~~l~T~S~G~~---~~R~vvI~~   66 (67)
T cd02644           5 EETLIRLAERAAEKVRRTGK-PVKLEPM-NAYERRIIHDALANDEDVETESEGEG---PYRRVVISP   66 (67)
T ss_pred             HHHHHHHHHHHHHHHHHHCC-eeEeCCC-CHHHHHHHHHHHHhCCCceEEeecCC---CCeEEEEEe
Confidence            34677788888888887775 5999999 9999999999999877 999987643   346788764

SpoIIIJ is necessary for the third stage of sporulation. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.

>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain

Probab=96.87  E-value=0.00049  Score=52.87  Aligned_cols=59  Identities=15%  Similarity=0.228  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHhcCCCccceecCCCCChHHHHHHHHhhhhhccceeeecccccCCccEEEEEe
Q 018993           39 LRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRK  100 (348)
Q Consensus        39 LrlE~di~~FI~d~~~~~lel~pmpnSY~RLLvHRvA~yygL~h~v~d~~~Dgs~~~Ivv~K  100 (348)
                      |.+-.+|+-|..+.....+.|||--+.-+|.++|.||..+||.|.....   |....|+|+|
T Consensus         2 l~~YsqlllFkdd~~~~eL~Fp~~ls~~eRriih~la~~lGL~~~s~G~---g~~R~v~v~k   60 (60)
T cd02639           2 LEIYSQLLLFKDDRMRDELAFPSSLSPAERRIVHLLASRLGLNHVSDGT---GERRQVQITK   60 (60)
T ss_pred             ccceeeEEEEecCCCceEEEcCCCCCHHHHHHHHHHHHHcCCceEEeCC---CceEEEeecC
Confidence            3444566778888888889999833999999999999999999998653   2334565543

Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.

>cd02645 R3H_AAA R3H domain of a group of proteins with unknown function, who also contain a AAA-ATPase (AAA) domain

Probab=96.40  E-value=0.01  Score=45.65  Aligned_cols=53  Identities=19%  Similarity=0.317  Sum_probs=38.5

Q ss_pred             HHHHHHHhcCCCccceecCCCCChHHHHHHHHhhhhhccceeeecccccCCccEEEEE
Q 018993           42 ELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVR   99 (348)
Q Consensus        42 E~di~~FI~d~~~~~lel~pmpnSY~RLLvHRvA~yygL~h~v~d~~~Dgs~~~Ivv~   99 (348)
                      +..+..-+. +.....+|.|| |+|-|-++|.+.+.|||.+.....++   ..+|+|.
T Consensus         7 ~~aa~~V~~-~~~~~veL~Pm-~~~eRri~H~~v~~~~l~s~S~G~ep---~RrvvI~   59 (60)
T cd02645           7 RLAIEQVVI-PKGEPVELLPR-SAYIRRLQHDLVERYQLRSESFGSEP---NRRLRIL   59 (60)
T ss_pred             HHHHHHHHh-cCCceEEcCCC-CHHHHHHHHHHHHHCCCeEEEecCCC---CcEEEEe
Confidence            334444443 44235899999 99999999999999999999975433   3467764

The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to be binding ssDNA or ssRNA in a sequence-specific manner.

>cd02638 R3H_unknown_1 R3H domain of a group of eukaryotic proteins with unknown function

Probab=95.73  E-value=0.028  Score=43.78  Aligned_cols=56  Identities=21%  Similarity=0.318  Sum_probs=40.2

Q ss_pred             HHHHHHHHHhcCCCc-cceecCCCCChHHHHHHHHhhh-hhccceeeecccccCCccEEEEE
Q 018993           40 RMELDIQRFLQNPDQ-QHFEFQHFPTSYLRLAAHRVSQ-HYGLVTMVQENGIEGLGNRILVR   99 (348)
Q Consensus        40 rlE~di~~FI~d~~~-~~lel~pmpnSY~RLLvHRvA~-yygL~h~v~d~~~Dgs~~~Ivv~   99 (348)
                      ...++|+-|++.... ..+.|+|| |+|.|-++|...+ +-++.+..+..   +...+|+|.
T Consensus         3 ~~~~~~~~f~~~~~~~r~v~LePM-~~~ERkIIH~~Lq~~~~v~T~S~G~---ep~RrVVI~   60 (62)
T cd02638           3 RVSEELEIFLLSFQRYRVLLFPPL-NSRRRYLIHQTVENRFLLSTFSVGE---GWARRTVVC   60 (62)
T ss_pred             hhHHHHHHHHHhcccCCeEecCCC-ChHHHHHHHHHHhcCCCceEEEccC---CCCcEEEEe
Confidence            356777788887633 45889999 9999999998654 66777777543   344567663

The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.

>cd02637 R3H_PARN R3H domain of Poly(A)-specific ribonuclease (PARN)

Probab=89.54  E-value=0.49  Score=36.92  Aligned_cols=36  Identities=14%  Similarity=0.255  Sum_probs=29.9

Q ss_pred             HHHHHHHHhcCCCccceecCCCCChHHHHHHHHhhhhh
Q 018993           41 MELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHY   78 (348)
Q Consensus        41 lE~di~~FI~d~~~~~lel~pmpnSY~RLLvHRvA~yy   78 (348)
                      +...|.+|+++. ...+++++| |+|+|-|++....+.
T Consensus         4 v~~~i~~fl~s~-~~~l~le~c-ngf~RkLiyq~l~~~   39 (65)
T cd02637           4 VIERIEAFLESE-EDDLELEPC-NGFQRKLIYQTLEQK   39 (65)
T ss_pred             HHHHHHHHHhcC-ccccccccc-ccHHHHHHHHHHHHH
Confidence            446678899887 557999999 999999999887765

PARN is a poly(A)-specific 3' exonuclease from the RNase D family that, in Xenopus, deadenylates a specific class of maternal mRNAs which results in their translational repression. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	348
1whr_A	124	Solution Structure Of The R3h Domain From Human Hyp		3e-08

>pdb|1WHR|A Chain A, Solution Structure Of The R3h Domain From Human Hypothetical Protein Baa76846 Length = 124

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 56/93 (60%), Gaps = 11/93 (11%)
Query: 24  FLVEALQ-NPRHRLTILRMELDIQRFLQNPDQQHFEFQHFP--TSYLRLAAHRVSQHYGL 80
           FLV  L+ NPR R+ +L++E +I  F+ + + Q   F+ FP  TSY R+  HRV+ ++G+
Sbjct: 18  FLVNTLKKNPRDRMMLLKLEQEILEFINDNNNQ---FKKFPQMTSYHRMLLHRVAAYFGM 74
Query: 81  VTMVQENGIEGLGNRILVRKTAESKYPAVRLSE 113
                ++ ++  G  +++ KT+ ++ P  R SE
Sbjct: 75  -----DHNVDQTGKAVIINKTSNTRIPEQRFSE 102

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	348
1whr_A	124	Hypothetical KIAA1002 protein; R3H domain, structu	7e-26
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06

>1whr_A Hypothetical KIAA1002 protein; R3H domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.68.7.1 Length = 124

 Score = 99.4 bits (247), Expect = 7e-26
 Identities = 33/120 (27%), Positives = 67/120 (55%), Gaps = 11/120 (9%)

Query: 21  VDPFLVEALQ-NPRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYG 79
           +  FLV  L+ NPR R+ +L++E +I  F+ + + Q  +F    TSY R+  HRV+ ++G
Sbjct: 15  LHEFLVNTLKKNPRDRMMLLKLEQEILEFINDNNNQFKKFPQ-MTSYHRMLLHRVAAYFG 73

Query: 80  LVTMVQENGIEGLGNRILVRKTAESKYPAVRLSEIPAKQSEESDKLEKIKIAIRRRPNAG 139
           +     ++ ++  G  +++ KT+ ++ P  R SE    + E++ + ++    I   P++G
Sbjct: 74  M-----DHNVDQTGKAVIINKTSNTRIPEQRFSEH--IKDEKNTEFQQRF--ILSGPSSG 124

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 6e-06
 Identities = 52/344 (15%), Positives = 111/344 (32%), Gaps = 99/344 (28%)

Query: 13  IVNERESMVDPFLVEALQ-NPRHRLTILRME-----LDIQRFLQNPDQQHFEFQHF---- 62
           +++++E MV  F+ E L+ N +  ++ ++ E     +  + +++  D+ + + Q F    
Sbjct: 71  LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130

Query: 63  -----PTSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRKTAESKYPAVRLSEIP-- 115
                P   LR A   +     ++  +   G+ G G   +      S        ++   
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVL--ID--GVLGSGKTWVALDVCLSY---KVQCKMDFK 183

Query: 116 ------AKQSEESDKLEKI-KIAIRRRPNAGCVNGANETGTKRSPVRSVEERK------E 162
                    +     LE + K+  +  PN    + ++ +   +  + S++         +
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNW--TSRSDHSSNIKLRIHSIQAELRRLLKSK 241

Query: 163 EYDRA------------------RARI-----FSGPSSPNSEDTLTQVSTDMKNIGFNRD 199
            Y+                      +I     F   +   S  T T +S D  ++    D
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301

Query: 200 ERE-----IVRNSITD----AEKI----ISI-----RDGAGLSRVAIFRDREKDRTDPDY 241
           E +      +     D            +SI     RD  GL+    ++    D+     
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD--GLATWDNWKHVNCDKLTTII 359

Query: 242 DRSYERSLPTNQGFSLPPFNMQKVQLPFMQYD--TGFPQFSQIP 283
           + S            L P   +K       +D  + FP  + IP
Sbjct: 360 ESSLN---------VLEPAEYRK------MFDRLSVFPPSAHIP 388

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	348
1whr_A	124	Hypothetical KIAA1002 protein; R3H domain, structu	100.0
1msz_A	86	DNA-binding protein smubp-2; R3H fold; NMR {Homo s	98.53
2cpm_A	94	Sperm-associated antigen 7; R3H domain, structural	98.04
1ug8_A	87	Poly(A)-specific ribonuclease; R3H domain, poly(A)	96.98
3gku_A	225	Probable RNA-binding protein; APC21302, clostridiu	82.96

>1whr_A Hypothetical KIAA1002 protein; R3H domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.68.7.1

Probab=100.00  E-value=2.1e-33  Score=239.76  Aligned_cols=114  Identities=29%  Similarity=0.515  Sum_probs=101.5

Q ss_pred             hccCCCCchHHHHHHhc-CchhHHHHHHHHHHHHHHhcCCCccceecCCCCChHHHHHHHHhhhhhccceeeecccccCC
Q 018993           14 VNERESMVDPFLVEALQ-NPRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVTMVQENGIEGL   92 (348)
Q Consensus        14 ~~~~~~~vd~~L~eAL~-npkDRl~lLrlE~di~~FI~d~~~~~lel~pmpnSY~RLLvHRvA~yygL~h~v~d~~~Dgs   92 (348)
                      .+..+.+||+||++||+ |||||++||+||++|++||+++.++.++|+|| |||+||||||||+||||+|.+     |+.
T Consensus         8 ~d~~~~~vd~~l~eaL~~~~rdR~~il~lE~~i~~Fi~d~~~~~~ef~pm-nSy~RllvHrvAe~ygL~h~~-----d~~   81 (124)
T 1whr_A            8 TDSTGIDLHEFLVNTLKKNPRDRMMLLKLEQEILEFINDNNNQFKKFPQM-TSYHRMLLHRVAAYFGMDHNV-----DQT   81 (124)
T ss_dssp             SCCCCSCHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHCSSCCEEECCCC-CHHHHHHHHHHHHHHTCCEEE-----CSS
T ss_pred             ccCCCCccCHHHHHHHHcCHHHHHHHHHHHHHHHHHHhCCCccceECCCC-CHHHHHHHHHHHHHhCcCccc-----cCC
Confidence            46688899999999995 99999999999999999999999889999999 999999999999999999976     345


Q ss_pred             ccEEEEEecCCCCCCcccccccccCCcCcCchhhhhhhhhccCCC
Q 018993           93 GNRILVRKTAESKYPAVRLSEIPAKQSEESDKLEKIKIAIRRRPN  137 (348)
Q Consensus        93 ~~~Ivv~KT~~triP~vrLsdl~~~~~~~s~~~~~~K~~ImkR~~  137 (348)
                      +++|+|+||++||+|.++|+|+++...    ..+.++..|+||++
T Consensus        82 ~r~VvV~Kt~~tr~P~~~lse~~~~~~----~~~~~~~~vl~r~~  122 (124)
T 1whr_A           82 GKAVIINKTSNTRIPEQRFSEHIKDEK----NTEFQQRFILSGPS  122 (124)
T ss_dssp             CSSEEEECCTTCCCCSCCGGGTSCSCS----CCCCCCSSCCCCCC
T ss_pred             CCEEEEEeCCCCCCChHHHHHHhcccc----cccchheeeEecCC
Confidence            688999999999999999999996432    23356778999975

>2cpm_A Sperm-associated antigen 7; R3H domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.04  E-value=1.3e-05  Score=65.29  Aligned_cols=63  Identities=22%  Similarity=0.278  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHhcCCCccceecCCCCChHHHHHHHHhhhhhccceeeecccccCCccEEEEEecC
Q 018993           37 TILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRKTA  102 (348)
Q Consensus        37 ~lLrlE~di~~FI~d~~~~~lel~pmpnSY~RLLvHRvA~yygL~h~v~d~~~Dgs~~~Ivv~KT~  102 (348)
                      |-.+.|+.|..|+++..+..++|+|| |+|.|-+||.+++.+||.+...+.++.  ..+|||.+..
T Consensus        12 yR~~re~~L~~la~~~g~~~v~L~PM-~~~eRriIH~~l~~~gl~S~S~Geep~--~R~VvI~~~~   74 (94)
T 2cpm_A           12 FRKRMEKEVSDFIQDSGQIKKKFQPM-NKIERSILHDVVEVAGLTSFSFGEDDD--CRYVMIFKKE   74 (94)
T ss_dssp             HHHHHHHHHHHHHHCSSCCEEECCCC-CSSHHHHHHHHHHHHTCEEEEECSSSS--CCEEEEECST
T ss_pred             HHHHHHHHHHHHHHhcCCCceEeCCC-CHHHHHHHHHHHHHCCCEEEEecCCCC--ceEEEEEeCC
Confidence            55588999999998877656999999 999999999999999999999764331  1478887654

>1ug8_A Poly(A)-specific ribonuclease; R3H domain, poly(A)-specific 3'-exoribonuclease, PARN, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.68.7.1

Probab=96.98  E-value=0.0021  Score=51.79  Aligned_cols=44  Identities=18%  Similarity=0.243  Sum_probs=40.3

Q ss_pred             chhHHHHHHHHHHHHHHhcCCCccceecCCCCChHHHHHHHHhhh
Q 018993           32 PRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQ   76 (348)
Q Consensus        32 pkDRl~lLrlE~di~~FI~d~~~~~lel~pmpnSY~RLLvHRvA~   76 (348)
                      |.++-+|=.+-..|.+|+++++...++++|+ |+|+|-|+++-+.
T Consensus         7 ~e~k~~id~i~~kIe~FL~s~~~~~l~l~pC-N~f~RkLIYQ~~~   50 (87)
T 1ug8_A            7 GDQKKFIDQVIEKIEDFLQSEEKRSLELDPC-TGFQRKLIYQTLS   50 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCSSCCEEECCCC-CSHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhCCCCCceecCCc-hHHHHHHHHHHHH
Confidence            5788899999999999999999778999999 9999999999854

>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}

Probab=82.96  E-value=2.2  Score=39.46  Aligned_cols=59  Identities=14%  Similarity=0.156  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHhcCCCccceecCCCCChHHHHHHHHhhhh-hccceeeecccccCCccEEEEEe
Q 018993           37 TILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQH-YGLVTMVQENGIEGLGNRILVRK  100 (348)
Q Consensus        37 ~lLrlE~di~~FI~d~~~~~lel~pmpnSY~RLLvHRvA~y-ygL~h~v~d~~~Dgs~~~Ivv~K  100 (348)
                      .|-+|-+.+.+=+..... .+.|.|| |+|.|-+||...+- =++.+.....+   ...+|||..
T Consensus       149 ~L~~lA~~~A~kV~~tg~-~v~L~PM-~~~ERriIH~al~~~~~V~T~SeGee---p~R~VVI~~  208 (225)
T 3gku_A          149 TLETLAKNIAYKVKRTKR-SVSLEPM-NPYERRIIHAALQNDKYVVTRSDGEE---PFRHVIISL  208 (225)
T ss_dssp             HHHHHHHHHHHHHHHHCS-CEECCCC-CHHHHHHHHHHTTTCSSEEEEEESST---TSCEEEEEE
T ss_pred             HHHHHHHHHHHHHHHhCC-EEEccCC-CHHHHHHHHHHHccCCCcEEEEeecC---CCeEEEEEE
Confidence            444444444444444443 4789999 99999999997655 48888876543   335677754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	348
d1whra_	124	d.68.7.1 (A:) R3H domain protein KIAA1002 {Human (	1e-28

>d1whra_ d.68.7.1 (A:) R3H domain protein KIAA1002 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: R3H domain
family: R3H domain
domain: R3H domain protein KIAA1002
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (263), Expect = 1e-28
 Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 11/120 (9%)

Query: 21  VDPFLVEAL-QNPRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYG 79
           +  FLV  L +NPR R+ +L++E +I  F+ + + Q  +F    TSY R+  HRV+ ++G
Sbjct: 15  LHEFLVNTLKKNPRDRMMLLKLEQEILEFINDNNNQFKKFPQ-MTSYHRMLLHRVAAYFG 73

Query: 80  LVTMVQENGIEGLGNRILVRKTAESKYPAVRLSEIPAKQSEESDKLEKIKIAIRRRPNAG 139
           +   V +      G  +++ KT+ ++ P  R SE    +       E  +  I   P++G
Sbjct: 74  MDHNVDQT-----GKAVIINKTSNTRIPEQRFSEHIKDEKNT----EFQQRFILSGPSSG 124

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	348
d1whra_	124	R3H domain protein KIAA1002 {Human (Homo sapiens)	99.97
d1msza_	62	SmuBP-2 {Human (Homo sapiens) [TaxId: 9606]}	98.9
d1ug8a_	87	Poly(A)-specific ribonuclease PARN {Mouse (Mus mus	97.0

>d1whra_ d.68.7.1 (A:) R3H domain protein KIAA1002 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: R3H domain
family: R3H domain
domain: R3H domain protein KIAA1002
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.7e-31  Score=225.80  Aligned_cols=121  Identities=28%  Similarity=0.500  Sum_probs=107.5

Q ss_pred             hhhhhhccCCCCchHHHHHHh-cCchhHHHHHHHHHHHHHHhcCCCccceecCCCCChHHHHHHHHhhhhhccceeeecc
Q 018993            9 AAAAIVNERESMVDPFLVEAL-QNPRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVTMVQEN   87 (348)
Q Consensus         9 ~~~~~~~~~~~~vd~~L~eAL-~npkDRl~lLrlE~di~~FI~d~~~~~lel~pmpnSY~RLLvHRvA~yygL~h~v~d~   87 (348)
                      +.+...+..+.+|++||+++| +||+||+|||+||++|++||+|+..+.++|||| |+|+|+|||+||+||||.|+++  
T Consensus         3 ~~~~~td~~~~dl~~fl~~~l~~~~~dr~fil~lE~~l~~Fi~d~~~~~~~fppM-~s~~R~~vH~lAe~ygL~s~s~--   79 (124)
T d1whra_           3 SGSSGTDSTGIDLHEFLVNTLKKNPRDRMMLLKLEQEILEFINDNNNQFKKFPQM-TSYHRMLLHRVAAYFGMDHNVD--   79 (124)
T ss_dssp             CCCSSSCCCCSCHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHCSSCCEEECCCC-CHHHHHHHHHHHHHHTCCEEEC--
T ss_pred             CCCcccCCccccHHHHHHHHHHcChHhHHHHHHHHHHHHHHHhCCccceeECCCC-CHHHHHHHHHHHHHhCCccccc--
Confidence            445567888999999999999 699999999999999999999999889999999 9999999999999999999884  


Q ss_pred             cccCCccEEEEEecCCCCCCcccccccccCCcCcCchhhhhhhhhccCCCCC
Q 018993           88 GIEGLGNRILVRKTAESKYPAVRLSEIPAKQSEESDKLEKIKIAIRRRPNAG  139 (348)
Q Consensus        88 ~~Dgs~~~Ivv~KT~~triP~vrLsdl~~~~~~~s~~~~~~K~~ImkR~~k~  139 (348)
                         +.+.+|+|+||+.||+|.++|+|++....    ..+..|+.|+.|++++
T Consensus        80 ---~~~r~v~v~kt~~sriP~~~lse~i~~~~----~~e~~~r~i~~rps~g  124 (124)
T d1whra_          80 ---QTGKAVIINKTSNTRIPEQRFSEHIKDEK----NTEFQQRFILSGPSSG  124 (124)
T ss_dssp             ---SSCSSEEEECCTTCCCCSCCGGGTSCSCS----CCCCCCSSCCCCCCCC
T ss_pred             ---CCCCeEEEEeCCCCCCCcHHHHHHhCccc----ccchhhhhhhcCCCCC
Confidence               45678999999999999999999987542    2456788999998754

>d1msza_ d.68.7.1 (A:) SmuBP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: R3H domain
family: R3H domain
domain: SmuBP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=1e-09  Score=81.38  Aligned_cols=57  Identities=25%  Similarity=0.327  Sum_probs=49.8

Q ss_pred             HHHHHHHHHhcCCCccceecCC-CCChHHHHHHHHhhhhhccceeeecccccCCccEEEEEec
Q 018993           40 RMELDIQRFLQNPDQQHFEFQH-FPTSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRKT  101 (348)
Q Consensus        40 rlE~di~~FI~d~~~~~lel~p-mpnSY~RLLvHRvA~yygL~h~v~d~~~Dgs~~~Ivv~KT  101 (348)
                      .++..|.+||.+.++ .++||| | |+++|.+||.||++|||.|...+.+.   ...|+|.|.
T Consensus         4 ~~~~~i~~Fv~s~~~-~~~f~p~m-~~~~R~~vH~lA~~~gl~s~S~G~~~---~R~v~v~kk   61 (62)
T d1msza_           4 HFRAMIVEFMASKKM-QLEFPPSL-NSHDRLRVHQIAEEHGLRHDSSGEGK---RRFITVSKR   61 (62)
T ss_dssp             HHHHHHHHHHHHTCS-EEEECTTC-CSHHHHHHHHHHHHTTEEEEEECSSS---CCEEEEEEC
T ss_pred             HHHHHHHHHHhCCCC-EEEeCCCC-CHHHHHHHHHHHHHcCCeEEEEcCCC---CcEEEEEeC
Confidence            588999999999875 699998 9 99999999999999999999987543   357999886

>d1ug8a_ d.68.7.1 (A:) Poly(A)-specific ribonuclease PARN {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: R3H domain
family: R3H domain
domain: Poly(A)-specific ribonuclease PARN
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.00  E-value=0.0016  Score=50.65  Aligned_cols=67  Identities=19%  Similarity=0.298  Sum_probs=48.8

Q ss_pred             hhHHHHHHHHHHHHHHhcCCCccceecCCCCChHHHHHHHHhhhh-h--ccceeeecccccCCccEEEEEecC
Q 018993           33 RHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQH-Y--GLVTMVQENGIEGLGNRILVRKTA  102 (348)
Q Consensus        33 kDRl~lLrlE~di~~FI~d~~~~~lel~pmpnSY~RLLvHRvA~y-y--gL~h~v~d~~~Dgs~~~Ivv~KT~  102 (348)
                      .++-||=++.+.|.+|+++.+...|+|+|+ |+|+|.|+++...+ |  |+.-+....  +..+.-|+|.|..
T Consensus         8 d~k~fI~~v~erIe~fL~see~k~l~lepC-ngFqRKLIYQtl~~kfp~kI~vet~~~--Enk~r~Ivv~Kv~   77 (87)
T d1ug8a_           8 DQKKFIDQVIEKIEDFLQSEEKRSLELDPC-TGFQRKLIYQTLSWKYPKGIHVETLET--DKKERHIVISKVD   77 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSSCCEEECCCC-CSHHHHHHHHHHHHHSSSSEEEEEECC--SSSCSEEEEEECC
T ss_pred             hHHHHHHHHHHHHHHHHcCcccceeecCCC-cHHHHHHHHHHHHHhCCCcceeeeeee--cCCceEEEEEEcC
Confidence            457799999999999999988778999999 99999999998764 2  222222111  2344567776653