Citrus Sinensis ID: 018995

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------35
Protein Sequence
MEAIRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEAAPTAPTPSVDTMPPPPAYEEVNGIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVHNLLELNFVNLL
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHccEEEEccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccEEEEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEcccEEEHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccEEEEEcccEEEEEEEcHHEEEcHEEcc
Coil and Loop (DISEMBL)
MEAIRKQATKLREQVARQQQAVFKqfggggyggsdnvvtdeaELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKlsedsrkygsdntctsgnTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAkvretpgnpdlaLKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLSERqrieaaptaptpsvdtmppppayeevngiyasqthngstdAMGYFLGEvvhpyqaesdveltlSVGDYVVVRKVHNLLELNFVNLL
Flexible Loop (DISEMBL)
MEAIRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVegyivtgskqveigtklsedsrkygsdntctsgntlSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIevskrqakvretpgnpdlaLKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIeaaptaptpsvdtmPPPPAYEEVNGIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVHNllelnfvnll
Low Complexity Region (SEG)
MEAIRKQATKLREQVARQQQAVFKQFggggyggSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEaaaamaaVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEAAPTAptpsvdtmppppAYEEVNGIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVHNLLELNFVNLL
Disordered region (IsUnstruct)
************************************************RLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEI********************************************LKALGTQVAEPLRAMVLGAP**********************************************AAEVKLHDLKSNMAILGKEAAAAMAAVE**QQRLTLQRLIAMVEAERTYHQRVLQILDQL***********************************GIYAS**HNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVHNLLELNFVN**
Disordered Region (DISOPRED)
*********************************SDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQ*******************************AEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQL******************************************************GEVVHPYQAESDVELTLSVGDYVVVRKVHNLLELNFVNLL
Disordered Region (DISEMBL)
****************RQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKE*************RLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIE**********DTMPPPPAYEEVNGIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVHNLLELNFVNLL
Disordered Region (DISPRO)
*EAIRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLSE*****************************************AMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVHNLLELNFVNLL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
xxxxxxxxxxxxxxxxxxxxxVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPxxxxxxxxxxxxxxxxxxxxxxxxxxxxQAKVRETPGNPDLALKxxxxxxxxxxxxxxxxxxxxxAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEAAPTAPTPSVDTMPPPPAYEEVNGIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVHNLLELNFVNLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	348
255543841	371	clathrin binding protein, putative [Rici	0.962	0.902	0.867	1e-162
449464848	375	PREDICTED: uncharacterized protein LOC10	0.971	0.901	0.861	1e-161
357467415	371	Neutrophil cytosol factor [Medicago trun	0.962	0.902	0.852	1e-161
224080426	372	predicted protein [Populus trichocarpa]	0.962	0.900	0.85	1e-159
363808378	365	uncharacterized protein LOC100783004 [Gl	0.962	0.917	0.855	1e-159
356508236	371	PREDICTED: uncharacterized protein LOC10	0.962	0.902	0.852	1e-158
224103333	371	predicted protein [Populus trichocarpa]	0.962	0.902	0.867	1e-157
225458099	368	PREDICTED: uncharacterized protein LOC10	0.965	0.913	0.798	1e-156
289540934	379	SH3 domain-containing protein [Trifolium	0.939	0.862	0.823	1e-154
225427740	371	PREDICTED: uncharacterized protein LOC10	0.965	0.905	0.834	1e-151

>gi|255543841|ref|XP_002512983.1| clathrin binding protein, putative [Ricinus communis] gi|223547994|gb|EEF49486.1| clathrin binding protein, putative [Ricinus communis]

 Score =  578 bits (1490), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 294/339 (86%), Positives = 318/339 (93%), Gaps = 4/339 (1%)

Query: 1   MEAIRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAG 60
           MEAIRKQATKLREQVARQQQAV KQFG  GYGG+D V+TDEAELHQHQ+LE+LYISTRAG
Sbjct: 1   MEAIRKQATKLREQVARQQQAVLKQFGASGYGGADGVITDEAELHQHQKLEKLYISTRAG 60

Query: 61  KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQ 120
           KHFQRDIVRGVEGYIVTG+KQVEIGTKLSED RKYG++NTCTSGNTLSKAAL+Y RARAQ
Sbjct: 61  KHFQRDIVRGVEGYIVTGAKQVEIGTKLSEDCRKYGAENTCTSGNTLSKAALNYERARAQ 120

Query: 121 MEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKV 180
           MEKERGNLLKALGTQVAEPLRAMV+G PL+DARHLAQRYDRMRQEAEAQAIEVSKRQAKV
Sbjct: 121 MEKERGNLLKALGTQVAEPLRAMVMGTPLEDARHLAQRYDRMRQEAEAQAIEVSKRQAKV 180

Query: 181 RETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAE 240
           RE PG+P+LA+KL+AAE KL DLKSNMA+LGKEAAAAMAAVE+QQQRLTLQRLIAMVEAE
Sbjct: 181 REMPGSPELAMKLEAAESKLQDLKSNMAVLGKEAAAAMAAVEAQQQRLTLQRLIAMVEAE 240

Query: 241 RTYHQRVLQILDQLEGEMLSERQRIEAAPTAPTPSV-DTMPPPPAYEEVNGIYASQTHNG 299
           R YHQRVLQILDQLE EM+SERQRIEA    P PSV ++MPPPP+YEEVNG+YASQ+HNG
Sbjct: 241 RAYHQRVLQILDQLESEMISERQRIEA---PPPPSVENSMPPPPSYEEVNGVYASQSHNG 297

Query: 300 STDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVHN 338
           STD MGYFLGEV+H YQAES+VELTLSVGDYVVVRKV N
Sbjct: 298 STDGMGYFLGEVIHSYQAESNVELTLSVGDYVVVRKVTN 336

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464848|ref|XP_004150141.1| PREDICTED: uncharacterized protein LOC101205534 [Cucumis sativus] gi|449520605|ref|XP_004167324.1| PREDICTED: uncharacterized protein LOC101227373 [Cucumis sativus]

 Score =  575 bits (1482), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 293/340 (86%), Positives = 319/340 (93%), Gaps = 2/340 (0%)

Query: 1   MEAIRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAG 60
           M+AIRKQATKLREQVARQQQAV KQFG GGYGGSDN++TDEAELHQHQ+LE+LYISTRAG
Sbjct: 1   MDAIRKQATKLREQVARQQQAVLKQFGAGGYGGSDNIITDEAELHQHQKLEKLYISTRAG 60

Query: 61  KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQ 120
           KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYG++NTCTSG+TLSKAAL+YGRARAQ
Sbjct: 61  KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGAENTCTSGSTLSKAALNYGRARAQ 120

Query: 121 MEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKV 180
           MEKERGN+LKALGTQVAEPLRAMV+GAPL+DARHLAQRYDRMRQEAEAQAIEV KRQA+V
Sbjct: 121 MEKERGNMLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEAQAIEVFKRQARV 180

Query: 181 RETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAE 240
           RE PGN ++ +KL+AAE KLHDLKSNMA +GKEAAAAMAAVE+QQQRLTLQRLIAMVEAE
Sbjct: 181 REAPGNAEITVKLEAAEAKLHDLKSNMATMGKEAAAAMAAVEAQQQRLTLQRLIAMVEAE 240

Query: 241 RTYHQRVLQILDQLEGEMLSERQRIEA-APTAPTPSVD-TMPPPPAYEEVNGIYASQTHN 298
           R YHQRVLQILDQLEGEM+ ERQRIEA     P PS+D +MPPPP+YEEVNG++ASQ HN
Sbjct: 241 RAYHQRVLQILDQLEGEMILERQRIEAPPTPPPGPSIDNSMPPPPSYEEVNGVFASQAHN 300

Query: 299 GSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVHN 338
           GSTDAMGYFLGEV+HPY AESDVEL LSVGDYVVVRKV N
Sbjct: 301 GSTDAMGYFLGEVMHPYLAESDVELNLSVGDYVVVRKVSN 340

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357467415|ref|XP_003603992.1| Neutrophil cytosol factor [Medicago truncatula] gi|355493040|gb|AES74243.1| Neutrophil cytosol factor [Medicago truncatula]

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 289/339 (85%), Positives = 313/339 (92%), Gaps = 4/339 (1%)

Query: 1   MEAIRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAG 60
           MEAIRKQA+KLREQVARQQQAV KQFG GGYGGSDN+VTDE EL QHQ+LE+LYISTRAG
Sbjct: 1   MEAIRKQASKLREQVARQQQAVLKQFGAGGYGGSDNMVTDEVELQQHQKLEKLYISTRAG 60

Query: 61  KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQ 120
           KH+QRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGS+NTCTSG+TLS+AAL+Y  ARAQ
Sbjct: 61  KHYQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSENTCTSGSTLSRAALNYAHARAQ 120

Query: 121 MEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKV 180
           MEKERGNLLKALGTQVAEPLRAMV+GAPL+DARHLAQRYDRMRQ+AEAQAIEVSKRQAKV
Sbjct: 121 MEKERGNLLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQDAEAQAIEVSKRQAKV 180

Query: 181 RETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAE 240
           RETPGN +  +KL+AAE KL DLKSNMAILGKEAAAAM AVE+QQQRLTLQRLIAMVEAE
Sbjct: 181 RETPGNAENTMKLEAAETKLQDLKSNMAILGKEAAAAMTAVEAQQQRLTLQRLIAMVEAE 240

Query: 241 RTYHQRVLQILDQLEGEMLSERQRIEAAPTAPTPSVD-TMPPPPAYEEVNGIYASQTHNG 299
           R YHQRVLQILD LEGEM+SERQRIEA    PTPSVD +MPPPP YEEVNG+YASQ HNG
Sbjct: 241 RAYHQRVLQILDHLEGEMISERQRIEA---PPTPSVDNSMPPPPPYEEVNGVYASQEHNG 297

Query: 300 STDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVHN 338
            TD+MGYFLGEV+ PY AES+VEL LSVGDY+V+RKV N
Sbjct: 298 ITDSMGYFLGEVLFPYHAESEVELNLSVGDYIVIRKVSN 336

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080426|ref|XP_002306133.1| predicted protein [Populus trichocarpa] gi|222849097|gb|EEE86644.1| predicted protein [Populus trichocarpa]

 Score =  568 bits (1465), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 289/340 (85%), Positives = 316/340 (92%), Gaps = 5/340 (1%)

Query: 1   MEAIRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAG 60
           MEAIRKQATKLREQVA+QQQAV KQFG GGYGGSD V+TDEAELHQHQ+LERLYISTRAG
Sbjct: 1   MEAIRKQATKLREQVAKQQQAVLKQFGAGGYGGSDTVITDEAELHQHQKLERLYISTRAG 60

Query: 61  KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQ 120
           KHFQRD+VRGVEGYIVTGSKQVEIGT+ SEDSRKYG++NTCTSGNTLSKAA++Y  ARAQ
Sbjct: 61  KHFQRDVVRGVEGYIVTGSKQVEIGTRFSEDSRKYGAENTCTSGNTLSKAAVNYANARAQ 120

Query: 121 MEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKV 180
           MEKERGNLLKALGTQVAEPLRAMV+GAPL+DARHLAQRYDRMRQEAEAQAIEV+KRQAKV
Sbjct: 121 MEKERGNLLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEAQAIEVAKRQAKV 180

Query: 181 RETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAE 240
           RE PGN +LA+KL++AE KL DLKSNMAILGKEAAAAMAAVE+QQQRLTLQRLIAMVEAE
Sbjct: 181 REMPGNSELAMKLESAETKLQDLKSNMAILGKEAAAAMAAVEAQQQRLTLQRLIAMVEAE 240

Query: 241 RTYHQRVLQILDQLEGEMLSERQRIEAAPTAPTPSVD-TMPPPPAYEEVNGIYASQT-HN 298
           R YHQ VLQILDQLEGEM SERQRIEA    PTPS + +MPPPP+YEEVNG+YASQ  HN
Sbjct: 241 RAYHQTVLQILDQLEGEMASERQRIEA---PPTPSAESSMPPPPSYEEVNGVYASQAHHN 297

Query: 299 GSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVHN 338
           G+TD+MGYFLGEV+H YQ +SDVELTLS+GD+VVVRKV N
Sbjct: 298 GTTDSMGYFLGEVMHSYQGQSDVELTLSIGDFVVVRKVTN 337

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808378|ref|NP_001242513.1| uncharacterized protein LOC100783004 [Glycine max] gi|255635032|gb|ACU17874.1| unknown [Glycine max]

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 290/339 (85%), Positives = 316/339 (93%), Gaps = 4/339 (1%)

Query: 1   MEAIRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAG 60
           MEAIRKQA+KL EQVARQQQAV KQFG GGYGGSDN+VTDE EL QHQ+LE LYISTRAG
Sbjct: 1   MEAIRKQASKLLEQVARQQQAVLKQFGAGGYGGSDNMVTDEVELQQHQKLEELYISTRAG 60

Query: 61  KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQ 120
           KH+QRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYG+DNTCTSG+TLS+AAL+Y RARAQ
Sbjct: 61  KHYQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGADNTCTSGSTLSRAALNYARARAQ 120

Query: 121 MEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKV 180
           MEKERG+LLKALGTQVAEPLRAMV+GAPL+DARHLAQRYDRMRQEAEA+AIEVSKRQAKV
Sbjct: 121 MEKERGSLLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEARAIEVSKRQAKV 180

Query: 181 RETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAE 240
           RETPGN + A+KL+AAE KL DLK+NMAILGKEAAAAMAAVE+QQQRLTLQRLIAMVEAE
Sbjct: 181 RETPGNAENAMKLEAAETKLQDLKTNMAILGKEAAAAMAAVEAQQQRLTLQRLIAMVEAE 240

Query: 241 RTYHQRVLQILDQLEGEMLSERQRIEAAPTAPTPSVD-TMPPPPAYEEVNGIYASQTHNG 299
           R YHQRVLQILDQLEGEM+SERQRIEA    PTPSVD +M PPP+YEEVNG+YASQ HNG
Sbjct: 241 RAYHQRVLQILDQLEGEMISERQRIEA---PPTPSVDSSMTPPPSYEEVNGVYASQAHNG 297

Query: 300 STDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVHN 338
           STD+MGYFLGEV+ PY AES+VEL LSVGDY+V+RKV N
Sbjct: 298 STDSMGYFLGEVLFPYHAESEVELNLSVGDYIVIRKVTN 336

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508236|ref|XP_003522865.1| PREDICTED: uncharacterized protein LOC100810746 isoform 1 [Glycine max]

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 289/339 (85%), Positives = 315/339 (92%), Gaps = 4/339 (1%)

Query: 1   MEAIRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAG 60
           MEAIRKQA+KLREQVARQQQAV KQFG GGYGGSDN+VTDE EL QHQ+LE+LYISTRAG
Sbjct: 1   MEAIRKQASKLREQVARQQQAVLKQFGAGGYGGSDNMVTDEVELQQHQKLEKLYISTRAG 60

Query: 61  KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQ 120
           KH+QRDIVRGVEGYIVTGSKQVEIGTKLSED+RKYG+DNTCTSG+TLS+AAL+Y  ARAQ
Sbjct: 61  KHYQRDIVRGVEGYIVTGSKQVEIGTKLSEDNRKYGADNTCTSGSTLSRAALNYAHARAQ 120

Query: 121 MEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKV 180
           MEKERG+LLKALGTQVAEPLRAMV+GAPL+DARHLAQRYDRMRQEAEAQAIEVSKRQAKV
Sbjct: 121 MEKERGSLLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEAQAIEVSKRQAKV 180

Query: 181 RETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAE 240
           RETPGN + A+KL+AAE KL DLK+NMAILGKEAAAAMAAVE+QQQRLTLQRLIAMVEAE
Sbjct: 181 RETPGNAENAMKLEAAETKLQDLKTNMAILGKEAAAAMAAVEAQQQRLTLQRLIAMVEAE 240

Query: 241 RTYHQRVLQILDQLEGEMLSERQRIEAAPTAPTPSVD-TMPPPPAYEEVNGIYASQTHNG 299
             YHQRVLQILDQLEGEM+SERQRIEA    PTPSVD +M PPP+YEEVNG+ ASQ HNG
Sbjct: 241 HAYHQRVLQILDQLEGEMISERQRIEA---PPTPSVDSSMTPPPSYEEVNGVCASQAHNG 297

Query: 300 STDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVHN 338
           STD+MGYFLGEV+ PY AES+VEL LSVGDY+VVRKV N
Sbjct: 298 STDSMGYFLGEVLFPYHAESEVELNLSVGDYIVVRKVTN 336

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103333|ref|XP_002313015.1| predicted protein [Populus trichocarpa] gi|222849423|gb|EEE86970.1| predicted protein [Populus trichocarpa]

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 294/339 (86%), Positives = 320/339 (94%), Gaps = 4/339 (1%)

Query: 1   MEAIRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAG 60
           MEAIRKQATKLREQVA+QQQAV KQFGGGGYGGSD +VTDEAELHQHQ+LERLYISTRAG
Sbjct: 1   MEAIRKQATKLREQVAKQQQAVLKQFGGGGYGGSDTLVTDEAELHQHQKLERLYISTRAG 60

Query: 61  KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQ 120
           KHFQRDIVRGVEGYIVTGSKQVEIGTK SEDSRKYG++NTCTSGNTLSKAA++YGRARAQ
Sbjct: 61  KHFQRDIVRGVEGYIVTGSKQVEIGTKFSEDSRKYGAENTCTSGNTLSKAAVNYGRARAQ 120

Query: 121 MEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKV 180
           MEKERGNLLKALGTQVAEPLRAMV+GAPL+DARHLAQRYDRMRQEAEAQAIEVSKRQAKV
Sbjct: 121 MEKERGNLLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEAQAIEVSKRQAKV 180

Query: 181 RETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAE 240
           RE PG+P+LA+KL++AE KL DLKSNM+ILGKEAAAAMAAVE+QQQRLTLQRLIAMVEAE
Sbjct: 181 REMPGSPELAMKLESAETKLQDLKSNMSILGKEAAAAMAAVEAQQQRLTLQRLIAMVEAE 240

Query: 241 RTYHQRVLQILDQLEGEMLSERQRIEAAPTAPTPSV-DTMPPPPAYEEVNGIYASQTHNG 299
           R YHQRVLQILDQLEGEM SERQRIEA    PTPS  ++MPPPP+YEEVNG+YASQ HNG
Sbjct: 241 RAYHQRVLQILDQLEGEMTSERQRIEA---PPTPSAENSMPPPPSYEEVNGMYASQAHNG 297

Query: 300 STDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVHN 338
           +TD++ YFLGEV+H YQ +SDVELTLS+GDYVVVRKV N
Sbjct: 298 TTDSISYFLGEVMHSYQGQSDVELTLSIGDYVVVRKVTN 336

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458099|ref|XP_002279562.1| PREDICTED: uncharacterized protein LOC100264255 isoform 1 [Vitis vinifera] gi|302142592|emb|CBI19795.3| unnamed protein product [Vitis vinifera]

 Score =  557 bits (1435), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 270/338 (79%), Positives = 306/338 (90%), Gaps = 2/338 (0%)

Query: 1   MEAIRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAG 60
           MEAIRKQATK+ +QVA+QQQAV KQF GGGYGG DNV+TDE+EL QHQ+LE+LYISTRAG
Sbjct: 1   MEAIRKQATKIIDQVAKQQQAVLKQFSGGGYGGPDNVLTDESELQQHQKLEKLYISTRAG 60

Query: 61  KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQ 120
           KHFQRDIVRGVEG+IVTGSKQVEIGTKLSEDSRKYG +NTCTSG+TLSKAALS+ RARAQ
Sbjct: 61  KHFQRDIVRGVEGFIVTGSKQVEIGTKLSEDSRKYGVENTCTSGSTLSKAALSFARARAQ 120

Query: 121 MEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKV 180
           MEKERGNLLKALGT+V EPLRAMV+GAPL+DARHLAQRY+RMR EAEAQAIEVSKRQ K 
Sbjct: 121 MEKERGNLLKALGTKVGEPLRAMVMGAPLEDARHLAQRYERMRMEAEAQAIEVSKRQIKA 180

Query: 181 RETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAE 240
           RE+ GNPD  LKL+AAE KLH+LKSN AILGKEA +AMAAVE QQQRLTLQR+IAMVE+E
Sbjct: 181 RESMGNPDNVLKLEAAEAKLHELKSNTAILGKEAVSAMAAVEGQQQRLTLQRIIAMVESE 240

Query: 241 RTYHQRVLQILDQLEGEMLSERQRIEAAPTAPTPSVDTMPPPPAYEEVNGIYASQTHNGS 300
           R+YHQ VLQILDQLE EML+ERQRIEA P+ PT + + MPPPP+Y+EVN ++ASQT+  S
Sbjct: 241 RSYHQSVLQILDQLESEMLAERQRIEAFPS-PTAN-NAMPPPPSYDEVNNVFASQTYGES 298

Query: 301 TDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVHN 338
           T +MGYFLGEV+H +QAESDVEL LSVGD+VV+RKV N
Sbjct: 299 TGSMGYFLGEVMHSFQAESDVELNLSVGDHVVIRKVSN 336

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|289540934|gb|ADD09605.1| SH3 domain-containing protein [Trifolium repens]

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 279/339 (82%), Positives = 307/339 (90%), Gaps = 12/339 (3%)

Query: 1   MEAIRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAG 60
           MEAIRKQA+KLREQVARQQQAV KQFG GGYGGSDN+VTDEAEL QHQ+LE+LYISTRA 
Sbjct: 1   MEAIRKQASKLREQVARQQQAVLKQFGAGGYGGSDNMVTDEAELQQHQKLEKLYISTRAA 60

Query: 61  KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQ 120
           KH+QRDIVRGVEGYIV GSKQVEIGTKLSEDSRKYG++NTCTSG+TLS+AAL+Y RARAQ
Sbjct: 61  KHYQRDIVRGVEGYIVNGSKQVEIGTKLSEDSRKYGAENTCTSGSTLSRAALNYARARAQ 120

Query: 121 MEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKV 180
           MEKERGNLLKALGTQVAEPLRAMV+GAPL+DARHLAQRYDRMRQ+AEAQAIEVSKRQAKV
Sbjct: 121 MEKERGNLLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQDAEAQAIEVSKRQAKV 180

Query: 181 RETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAE 240
           RETPGN + A+KL+AAE KL DLK+NMAILGKEAAAAM AVE+QQQRLTLQRLIAMVE+E
Sbjct: 181 RETPGNAENAMKLEAAETKLQDLKANMAILGKEAAAAMTAVEAQQQRLTLQRLIAMVESE 240

Query: 241 RTYHQRVLQILDQLEGEMLSERQRIEAAPTAPTPSVD-TMPPPPAYEEVNGIYASQTHNG 299
           R YHQRVLQ        M+SERQRIEA    PTPSVD +MPPPP+YEEVNG+YASQ HNG
Sbjct: 241 RAYHQRVLQ--------MISERQRIEA---PPTPSVDNSMPPPPSYEEVNGVYASQDHNG 289

Query: 300 STDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVHN 338
            TD+MGYFLGEV+ PY AES+VEL L VGDY+V+RKV N
Sbjct: 290 ITDSMGYFLGEVLFPYHAESEVELNLLVGDYIVIRKVTN 328

Source: Trifolium repens

Species: Trifolium repens

Genus: Trifolium

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427740|ref|XP_002266234.1| PREDICTED: uncharacterized protein LOC100260580 isoform 1 [Vitis vinifera] gi|147864615|emb|CAN81938.1| hypothetical protein VITISV_028002 [Vitis vinifera] gi|297744745|emb|CBI38007.3| unnamed protein product [Vitis vinifera]

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 282/338 (83%), Positives = 311/338 (92%), Gaps = 2/338 (0%)

Query: 1   MEAIRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAG 60
           MEAIRKQA+K REQVA+QQQAV KQFGGGGYGGSDNV+TDEAEL QHQ+LE+LYISTRAG
Sbjct: 1   MEAIRKQASKFREQVAKQQQAVLKQFGGGGYGGSDNVITDEAELQQHQKLEKLYISTRAG 60

Query: 61  KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQ 120
           KHFQRDIVRGVEG+IVTGSKQVEIGTKLSED RKYG +NTCTSGNTLSKAAL+YGRARAQ
Sbjct: 61  KHFQRDIVRGVEGFIVTGSKQVEIGTKLSEDCRKYGVENTCTSGNTLSKAALNYGRARAQ 120

Query: 121 MEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKV 180
           +EKERGNLLKALGTQVAEPLRAMV+GAPL+DARHLAQRY+RMRQEAEAQAIEVSKRQAK+
Sbjct: 121 IEKERGNLLKALGTQVAEPLRAMVMGAPLEDARHLAQRYERMRQEAEAQAIEVSKRQAKM 180

Query: 181 RETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAE 240
           RE  GN D  LKL+AAE KLHDLKSNMAILGKEAAAAMAAVE+QQQRLTLQRLIA VE+E
Sbjct: 181 REATGNADNTLKLEAAEAKLHDLKSNMAILGKEAAAAMAAVEAQQQRLTLQRLIATVESE 240

Query: 241 RTYHQRVLQILDQLEGEMLSERQRIEAAPTAPTPSVDTMPPPPAYEEVNGIYASQTHNGS 300
           R YHQRVLQIL+ LE EM+SERQRIEA P+ P    +  PPPP+YEEVNG++ASQTHNGS
Sbjct: 241 RAYHQRVLQILELLETEMISERQRIEAPPSPPVE--NNTPPPPSYEEVNGVFASQTHNGS 298

Query: 301 TDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVHN 338
           +D++ YFLGEV+H YQAESDVEL LS+GD+VVVRKV N
Sbjct: 299 SDSISYFLGEVMHSYQAESDVELNLSIGDFVVVRKVSN 336

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	348
TAIR|locus:2139554	368	AT4G34660 "AT4G34660" [Arabido	0.951	0.899	0.735	1.8e-126
TAIR|locus:2206174	439	AT1G31440 [Arabidopsis thalian	0.758	0.601	0.518	1.6e-73
TAIR|locus:2117666	351	AT4G18060 "AT4G18060" [Arabido	0.775	0.769	0.540	6.7e-72
TAIR|locus:2120257	169	AT4G39020 "AT4G39020" [Arabido	0.143	0.295	0.725	6.1e-15
DICTYBASE|DDB_G0279009	576	gacP "RhoGAP domain-containing	0.672	0.406	0.208	0.00036

TAIR|locus:2139554 AT4G34660 "AT4G34660" [Arabidopsis thaliana (taxid:3702)]

 Score = 1242 (442.3 bits), Expect = 1.8e-126, P = 1.8e-126
 Identities = 247/336 (73%), Positives = 284/336 (84%)

Query:     1 MEAIRKQATKLREQVARQQQAVFKQFXXXXXXXSDNVVTDEAELHQHQRLERLYISTRAG 60
             M+AIRKQA++LREQVARQQQAVFKQF           + DEAEL+QHQ+LE+LYISTRA 
Sbjct:     1 MDAIRKQASRLREQVARQQQAVFKQFGGGGYGSG---LADEAELNQHQKLEKLYISTRAA 57

Query:    61 KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQ 120
             KH+QRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGS+NTCT+GN L++AAL+YGRARAQ
Sbjct:    58 KHYQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSENTCTNGNVLTRAALNYGRARAQ 117

Query:   121 MEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKV 180
             MEKERGN+LKALGTQVAEPLRAMVLGAPL+DARHLAQRYDRMRQEAEAQA EV++RQAK 
Sbjct:   118 MEKERGNMLKALGTQVAEPLRAMVLGAPLEDARHLAQRYDRMRQEAEAQATEVARRQAKA 177

Query:   181 RETPGNPDLALKLDAAEVKLHDLKSNMAILGKEXXXXXXXVESQQQRLTLQRLIAMVEAE 240
             RE+ GNPD+ +KL++AE KLHDLKSNM ILGKE       VE QQQ+LTL+RL++MVE+E
Sbjct:   178 RESQGNPDILMKLESAEAKLHDLKSNMTILGKEAASALASVEDQQQKLTLERLLSMVESE 237

Query:   241 RTYHQRVLQILDQLEGEMLSERQRIEAAPTAXXXXXXXXXXXXAYEEVNGIYASQTHNGS 300
             R YHQRVLQILDQLEGEM+SERQRIEA  T             +YEE NG++ASQ H+ S
Sbjct:   238 RAYHQRVLQILDQLEGEMVSERQRIEAPSTPSSADSMPPPP--SYEEANGVFASQMHDTS 295

Query:   301 TDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKV 336
             TD+MGYFLGEV+ PY   +DVEL+LS G+YVVVRKV
Sbjct:   296 TDSMGYFLGEVLFPYHGVTDVELSLSTGEYVVVRKV 331

GO:0008150 "biological_process" evidence=ND

GO:0030276 "clathrin binding" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2206174 AT1G31440 [Arabidopsis thaliana (taxid:3702)]

 Score = 660 (237.4 bits), Expect = 1.6e-73, Sum P(2) = 1.6e-73
 Identities = 140/270 (51%), Positives = 184/270 (68%)

Query:     1 MEAIRKQATKLREQVARQQQAVFKQFXXXXXXXSDNVVTDEAELHQHQRLERLYISTRAG 60
             MEAIRKQA KLREQVARQQQAV K         +D VV DE ELH HQ+L+ LY ST+A 
Sbjct:     1 MEAIRKQAAKLREQVARQQQAVLKHLGHVN---ADAVVVDEEELHCHQKLQDLYSSTKAA 57

Query:    61 KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNT-LSKAALSYGRARA 119
             K  QR+IVRG+EG+I TG+K VEIG K +ED +KYG +N     NT LS+ A  +G +  
Sbjct:    58 KRLQRNIVRGLEGFIATGTKVVEIGLKFAEDFKKYGDENP--DANTPLSRVAHHFGTSYK 115

Query:   120 QMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAK 179
              +E ER  LL  L  QV EP+R M+  APL+DARHL   YDR+RQE EAQA +V +R++K
Sbjct:   116 SVEGERETLLGVLSEQVCEPIRTMIYSAPLEDARHLVNHYDRLRQEVEAQATDVLRRRSK 175

Query:   180 VRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEXXXXXXXVESQQQRLTLQRLIAMVEA 239
             ++E+  + +  +KL  +E +L +LKS+M  LGKE       V+ QQQ +T QRL A+VEA
Sbjct:   176 LKESDISEEAYIKLKNSESRLAELKSSMKTLGKEATKAMLEVDDQQQNVTSQRLRALVEA 235

Query:   240 ERTYHQRVLQILDQLEGEMLSERQRIEAAP 269
             ER+YH+  L ILD+L  EM++E + I ++P
Sbjct:   236 ERSYHRNALDILDKLHSEMIAEEEAIGSSP 265

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0012505 "endomembrane system" evidence=IDA

GO:0030276 "clathrin binding" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

TAIR|locus:2117666 AT4G18060 "AT4G18060" [Arabidopsis thaliana (taxid:3702)]

 Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
 Identities = 147/272 (54%), Positives = 191/272 (70%)

Query:     1 MEAIRKQATKLREQVARQQQAVFKQFXXXXXXXSDNVVTDEAELHQHQRLERLYISTRAG 60
             M+A R+QA+KLR+QVA+QQ AV KQF       SD +V DE E+ +H +L++LY STR+ 
Sbjct:     1 MDAFRRQASKLRDQVAKQQLAVIKQFSGTGYESSDVMVIDELEMQRHHQLDKLYRSTRSA 60

Query:    61 KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCT-SGNTLSKAALSYGRARA 119
             K FQRDIV+  E +   G + +E GTKLSED  +YG++N+     N L+KAA  YG AR 
Sbjct:    61 KEFQRDIVKAAEAFTTIGLRHIEAGTKLSEDCCRYGNENSQNIDENILAKAAAIYGDARK 120

Query:   120 QMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAK 179
              ++KE+ +  K L +QV +PLRAMV G+PL+DARHLAQRY RMRQEAE  A EVS+RQA+
Sbjct:   121 HVDKEQEDFNKLLASQVLDPLRAMVAGSPLEDARHLAQRYSRMRQEAETHATEVSRRQAR 180

Query:   180 VRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEXXXXXXXVESQQQRLTLQRLIAMVEA 239
             VRE P  P+   KL  AE K+ +LK+NMA+LGKE       VESQQ RLT QRL+AMVE 
Sbjct:   181 VREAP-IPENVAKLQLAEAKMQELKANMAVLGKEATAALAAVESQQHRLTFQRLVAMVEG 239

Query:   240 ERTYHQRVLQILDQLEGEMLSERQRIEAAPTA 271
             E+ YH R+  IL  +E EM++E+Q  E+AP A
Sbjct:   240 EKNYHLRIAAILSDIEAEMVTEKQHKESAPPA 271

GO:0030276 "clathrin binding" evidence=ISS

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

TAIR|locus:2120257 AT4G39020 "AT4G39020" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 6.1e-15, P = 6.1e-15
 Identities = 37/51 (72%), Positives = 45/51 (88%)

Query:   287 EVN-GIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKV 336
             E N G+ ASQ HNG++DAMGYFLGEV+ PYQA+SD EL+LSVGDYVV+R+V
Sbjct:    82 EANDGVNASQMHNGTSDAMGYFLGEVMFPYQADSDFELSLSVGDYVVIREV 132

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0279009 gacP "RhoGAP domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 119 (46.9 bits), Expect = 0.00036, P = 0.00036
 Identities = 52/250 (20%), Positives = 106/250 (42%)

Query:    24 KQFXXXXXXXSDNVVTDEAELH---QHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSK 80
             K F         NV+   A+     +   ++ L   T   K F R + + VE   ++   
Sbjct:     2 KNFKAKIITAKQNVMEKTAKRENTLEPDEMKELEKKTTETKDFLRKLTKSVEKETLSSGV 61

Query:    81 QVEIGTKLSEDSRKYG---SDNTCTSGNTLSKAALS-YGRARAQMEKERGNLLKALGTQV 136
              ++ GT+L+++   Y     DN   S   +    LS  G  +A  E  +  L  +L   V
Sbjct:    62 SIQDGTELADNFLDYSVHVRDNQ--SDLVILSGILSKIGEFQAGFEDLKSKLNSSLINDV 119

Query:   137 AEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAA 196
             ++PL++ ++   L  A+   + YDR+R   +A   E++  + +    P  P    K+  +
Sbjct:   120 SDPLKS-IIKTELKQAKESKREYDRVRVAFDAHLSELANLRKQKNVKP--P----KIQES 172

Query:   197 EVKLHDLKSNMAILGKEXXXXXXXVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEG 256
             E +   L++N   +G +            +  T+++L   +++  T+ Q+  + L Q+  
Sbjct:   173 EEECERLRTNFERVGIDTTCLLRDTNVITEFETVEKLCDYLDSYHTFFQKGYRWLAQMIP 232

Query:   257 EMLSERQRIE 266
             ++   R  +E
Sbjct:   233 DIYEYRLYVE 242


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.129   0.347    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      348       322   0.00085  116 3  10 23  0.42    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  602 (64 KB)
  Total size of DFA:  250 KB (2134 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  38.31u 0.17s 38.48t   Elapsed:  00:00:02
  Total cpu time:  38.31u 0.17s 38.48t   Elapsed:  00:00:02
  Start:  Fri May 10 14:50:35 2013   End:  Fri May 10 14:50:37 2013

GO:0007165 "signal transduction" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0043547 "positive regulation of GTPase activity" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	348
cd07607	209	cd07607, BAR_SH3P_plant, The Bin/Amphiphysin/Rvs (	1e-112
cd07307	194	cd07307, BAR, The Bin/Amphiphysin/Rvs (BAR) domain	1e-17
cd11839	58	cd11839, SH3_Intersectin_4, Fourth Src homology 3	3e-06

>gnl|CDD|153291 cd07607, BAR_SH3P_plant, The Bin/Amphiphysin/Rvs (BAR) domain of the plant SH3 domain-containing proteins

 Score =  325 bits (834), Expect = e-112
 Identities = 144/210 (68%), Positives = 170/210 (80%), Gaps = 1/210 (0%)

Query: 48  QRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTL 107
           Q+LERLY STRA KHFQRDIVRGVEG+I TGSKQ+EIGTKL+ED +KYGS+N   +   L
Sbjct: 1   QKLERLYASTRAAKHFQRDIVRGVEGFISTGSKQLEIGTKLAEDCKKYGSENPSVNTA-L 59

Query: 108 SKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAE 167
           S+A+L YG AR QMEKER NL + L  QVAEPLRAMV GAPL+DARHL QRYDR+RQE E
Sbjct: 60  SRASLHYGSARNQMEKERENLHRVLSEQVAEPLRAMVYGAPLEDARHLKQRYDRLRQEVE 119

Query: 168 AQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQR 227
           AQA EV++R++K +E+ GNPD A KL +AE KL +LKS+M  LGKEA +AM AVE QQQ+
Sbjct: 120 AQAAEVARRRSKDKESGGNPDNAAKLQSAESKLDELKSSMNTLGKEATSAMLAVEDQQQQ 179

Query: 228 LTLQRLIAMVEAERTYHQRVLQILDQLEGE 257
           +TLQRL+AMVEAER YHQR   ILD+L  E
Sbjct: 180 VTLQRLLAMVEAERAYHQRAADILDKLHDE 209

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins with similarity to Arabidopsis thaliana SH3 domain-containing proteins 1 (SH3P1) and 2 (SH3P2). SH3P1 is involved in the trafficking of clathrin-coated vesicles. It is localized at the plasma membrane and is associated with vesicles of the trans-Golgi network. Yeast complementation studies reveal that SH3P1 has similar functions to the Saccharomyces cerevisiae Rvs167p, which is involved in endocytosis and actin cytoskeletal arrangement. Members of this group contain an N-terminal BAR domain and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. Length = 209

>gnl|CDD|153271 cd07307, BAR, The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

 Score = 79.4 bits (196), Expect = 1e-17
 Identities = 43/195 (22%), Positives = 94/195 (48%), Gaps = 8/195 (4%)

Query: 61  KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQ 120
           +   + +++  +  + +  +      KLSE  ++ G +    S   L +A   +G+ + +
Sbjct: 6   EKLLKKLIKDTKKLLDSLKELPAAAEKLSEALQELGKELPDLSNTDLGEALEKFGKIQKE 65

Query: 121 MEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKV 180
           +E+ R  L + L  +V EPL+  +    L + +   ++ D+ R + +A      ++  K+
Sbjct: 66  LEEFRDQLEQKLENKVIEPLKEYLKKD-LKEIKKRRKKLDKARLDYDA----AREKLKKL 120

Query: 181 RETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAE 240
           R+   +     KL  AE +L + K     L +E    +  +E +++ L L  L++ +EA+
Sbjct: 121 RKKKKDSS---KLAEAEEELQEAKEKYEELREELIEDLNKLEEKRKELFLSLLLSFIEAQ 177

Query: 241 RTYHQRVLQILDQLE 255
             + + VL+IL+QL 
Sbjct: 178 SEFFKEVLKILEQLL 192

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-BAR domain and is present in Pombe/Cdc15 homology (PCH) family proteins, which include Fes/Fes tyrosine kinases, PACSIN or syndapin, CIP4-like proteins, and srGAPs, among others. The Inverse (I)-BAR or IRSp53/MIM homology Domain (IMD) is found in multi-domain proteins, such as IRSp53 and MIM, that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The I-BAR domain induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. BAR domains that also serve as protein interaction domains include those of arfaptin and OPHN1-like proteins, among others, which bind to Rac and Rho GAP domains, respectively. Length = 194

>gnl|CDD|212773 cd11839, SH3_Intersectin_4, Fourth Src homology 3 domain (or SH3D) of Intersectin

 Score = 43.5 bits (103), Expect = 3e-06
 Identities = 11/29 (37%), Positives = 21/29 (72%)

Query: 308 LGEVVHPYQAESDVELTLSVGDYVVVRKV 336
           + +V+ P+ A ++ +L+L+VG  V+VRK 
Sbjct: 1   IAQVIAPFTATAENQLSLAVGQLVLVRKK 29

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The fourth SH3 domain (or SH3D) of ITSN1 has been shown to bind SHIP2, Numb, CdGAP, and N-WASP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	348
cd07607	209	BAR_SH3P_plant The Bin/Amphiphysin/Rvs (BAR) domai	100.0
cd07307	194	BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimeri	99.44
PF03114	229	BAR: BAR domain; InterPro: IPR004148 Endocytosis a	99.1
smart00721	239	BAR BAR domain.	98.58
cd07604	215	BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of	97.63
KOG1118	366	consensus Lysophosphatidic acid acyltransferase en	97.41
cd07595	244	BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR)	97.37
cd07639	200	BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of	97.33
cd07619	248	BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of	97.27
cd07616	229	BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) do	97.17
cd07603	200	BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of	97.12
cd07600	242	BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of	97.04
cd07606	202	BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain	97.01
cd07637	200	BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of	96.98
cd07602	207	BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR	96.95
cd07634	207	BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domai	96.94
cd07592	223	BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) dom	96.8
cd07594	229	BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) dom	96.76
cd07613	223	BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) do	96.7
cd07617	220	BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) do	96.59
cd07618	246	BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of	96.53
cd07593	215	BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) dom	96.51
cd07638	200	BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of	96.49
cd07596	218	BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of So	96.26
PF14604	49	SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3	96.2
cd07615	223	BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) do	96.07
cd07636	207	BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of G	95.96
smart00326	58	SH3 Src homology 3 domains. Src homology 3 (SH3) d	95.75
cd07635	207	BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of	95.74
PF00018	48	SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Ho	95.72
cd00174	54	SH3 Src homology 3 domains; SH3 domains bind to pr	95.58
cd07614	223	BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) do	94.95
cd07590	225	BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of B	94.9
cd07588	211	BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) doma	94.79
cd07601	215	BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of A	94.2
cd07676	253	F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/A	93.73
cd07620	257	BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of	93.59
cd07598	211	BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of	93.07
PF07653	55	SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3	92.8
PF09325	236	Vps5: Vps5 C terminal like; InterPro: IPR015404 Vp	92.57
PF10455	289	BAR_2: Bin/amphiphysin/Rvs domain for vesicular tr	89.39
cd07633	207	BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of	86.44
KOG0162	1106	consensus Myosin class I heavy chain [Cytoskeleton	85.73
cd07599	216	BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain o	82.42
PF08397	219	IMD: IRSp53/MIM homology domain; InterPro: IPR0136	82.04
KOG4225	489	consensus Sorbin and SH3 domain-containing protein	81.24
PRK04406	75	hypothetical protein; Provisional	80.92
cd07642	215	BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of	80.84

>cd07607 BAR_SH3P_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant SH3 domain-containing proteins

Probab=100.00  E-value=1.4e-120  Score=819.50  Aligned_cols=209  Identities=69%  Similarity=0.984  Sum_probs=206.5

Q ss_pred             HHHHHHHhhhhhchhhhhhhhhccceeeeecceeehhhhhhhhhhhhccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhH
Q 018995           48 QRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGN  127 (348)
Q Consensus        48 Q~LekLY~STRaaKhFQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~  127 (348)
                      |+|||||+|||||||||||||||||||||||+||||||+||||||||||+||| +++++||||+++||+||++|||||||
T Consensus         1 q~LekLY~STRaaKhFQrdIVrgvEg~is~g~Kq~Ei~~KlaeDc~KYG~en~-~~~~~LsrAa~~yG~a~~~mEkEre~   79 (209)
T cd07607           1 QKLERLYASTRAAKHFQRDIVRGVEGFISTGSKQLEIGTKLAEDCKKYGSENP-SVNTALSRASLHYGSARNQMEKEREN   79 (209)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhhhhheechhHHHHHHHHHHHHHHhccCCC-CcccHHHHHHHHHhHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999 57889999999999999999999999


Q ss_pred             HHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCChhhhhhhHHHHHhHHHHHHHH
Q 018995          128 LLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNM  207 (348)
Q Consensus       128 l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEaE~Qa~eV~rRq~k~res~gn~e~~~KLq~AE~Kl~ELks~M  207 (348)
                      |||+||+||+||||||||||||||||||+|||||||||||+||+||+|||+|+||++|||||++||++||+||+||||||
T Consensus        80 l~r~l~~QV~ePLRaMv~GaPLEDARhL~qrYdRmRQeaE~qa~eV~RRq~k~res~~~~e~~~KL~~AE~Kl~elks~M  159 (209)
T cd07607          80 LHRVLSEQVAEPLRAMVYGAPLEDARHLKQRYDRLRQEVEAQAAEVARRRSKDKESGGNPDNAAKLQSAESKLDELKSSM  159 (209)
T ss_pred             HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 018995          208 AILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGE  257 (348)
Q Consensus       208 a~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeAER~YHqrv~~ILd~L~~e  257 (348)
                      ++|||||||||++||+||||+|||||++||||||+|||||++|||+||+|
T Consensus       160 ~~LGKEA~aAm~aVEaQQQrlTlqRL~amVeaEr~Yhqrv~~ILd~l~~e  209 (209)
T cd07607         160 NTLGKEATSAMLAVEDQQQQVTLQRLLAMVEAERAYHQRAADILDKLHDE  209 (209)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            99999999999999999999999999999999999999999999999975

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins with similarity to Arabidopsis thaliana SH3 domain-containing proteins 1 (SH3P1) and 2 (SH3P2). SH3P1 is involved in the trafficking of clathrin-coated vesicles. It is localized at the plasma membrane and is associated with vesicles of the trans-Golgi network. Yeast complementation studies reveal that SH3P1 has similar functions to the Saccharomyces cerevisiae Rvs167p, which is involved in endocytosis and actin cytoskeletal arrangement. Members of this group contain an N-terminal BAR domain and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be i

>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

Probab=99.44  E-value=9.3e-12  Score=100.71  Aligned_cols=186  Identities=23%  Similarity=0.363  Sum_probs=161.2

Q ss_pred             hhhhhhhhccceeeeecceeehhhhhhhhhhhhccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHH
Q 018995           62 HFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLR  141 (348)
Q Consensus        62 hFQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLR  141 (348)
                      .+=+.|++.+..++..+.+.......|++-++++|...+...+..|+.+-..||.+...++..+.++..-+...|.+||+
T Consensus         7 ~~~~kl~k~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~v~~pL~   86 (194)
T cd07307           7 KLLKKLIKDTKKLLDSLKELPAAAEKLSEALQELGKELPDLSNTDLGEALEKFGKIQKELEEFRDQLEQKLENKVIEPLK   86 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555556666666667778889999999999998754443599999999999999999999999999999999999


Q ss_pred             HhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHH
Q 018995          142 AMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAV  221 (348)
Q Consensus       142 aMv~GaPLEDARhLaqRYdRmRQEaE~Qa~eV~rRq~k~res~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aV  221 (348)
                      ..+. ..+.+.+....+|++.|.+.++--..+.+-+.|..       +..||..++.++++.+.....+..+....|..+
T Consensus        87 ~~~~-~~~~~~~~~~k~~~~~~~~yd~~~~k~~~~~~~~~-------~~~~l~~~~~~~~~ar~~y~~~~~~~~~~l~~~  158 (194)
T cd07307          87 EYLK-KDLKEIKKRRKKLDKARLDYDAAREKLKKLRKKKK-------DSSKLAEAEEELQEAKEKYEELREELIEDLNKL  158 (194)
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9997 55678999999999999999998888876654422       568999999999999999999999999999999


Q ss_pred             HHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018995          222 ESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLE  255 (348)
Q Consensus       222 EaQQQrlTlQRLiaMVeAER~YHqrv~~ILd~L~  255 (348)
                      ..........-|.+++++...||+.+..++++|.
T Consensus       159 ~~~~~~~~~~~L~~~~~~q~~~~~~~~~~~~~l~  192 (194)
T cd07307         159 EEKRKELFLSLLLSFIEAQSEFFKEVLKILEQLL  192 (194)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence            9999998999999999999999999999988875

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-

>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment

Probab=99.10  E-value=1.4e-08  Score=85.42  Aligned_cols=219  Identities=21%  Similarity=0.364  Sum_probs=165.2

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCcceechHHHhhHHHHHHHHhhhhhchhhhhhhhhccceeeeecceeehhhh------
Q 018995           13 EQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGT------   86 (348)
Q Consensus        13 EqVAkQQQAV~Kqfg~~gy~~~d~~v~DEaElq~HQ~LekLY~STRaaKhFQrdIVRgvEGfis~gsKq~Ei~~------   86 (348)
                      -.+.|-.|.|.-.+|++     +...+|+.=-....++..+...+   +++++++    +.|+....+-..-..      
T Consensus         3 K~~~R~~q~~~~k~g~~-----~~t~~D~~f~~~~~~~~~~~~~~---~~l~~~~----~~~~~~~~~~~~~~~~~~~~~   70 (229)
T PF03114_consen    3 KKINRAKQRVKQKLGKS-----EKTEIDEEFEELEEKFKQLEESI---KKLQKSL----KKYLDSIKKLSASQKNMKSPF   70 (229)
T ss_dssp             HHHHHHHHHHHHHHTSH-----HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH----HHHHHHHHHHHHHHHCHTHHH
T ss_pred             hHHHHHHHHHHHHcCCC-----CCCcCCHHHHHHHHHHHHHHHHH---HHHHHHH----HHHHHHhhhhhHHhhhhhHHH
Confidence            34667777888888832     23335764222344444444333   4455444    334444444444444      


Q ss_pred             -hhhhhhhhccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHH
Q 018995           87 -KLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQE  165 (348)
Q Consensus        87 -KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQE  165 (348)
                       +|++.|..+|.+..  .+..++.+...||.+...++..+.+++.-+.+.|.+||+..+  ..+.+...+...+++.|.+
T Consensus        71 ~~l~~~l~~~~~~~~--~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~vi~pl~~~~--~~~~~i~~~~kkr~~~~ld  146 (229)
T PF03114_consen   71 EELADALIELGSEFS--DDSSLGNALEKFGEAMQEIEEARKELESQIESTVIDPLKEFL--KEFKEIKKLIKKREKKRLD  146 (229)
T ss_dssp             HHHHHHHHHHHHCTS--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccc--ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHH
Confidence             99999999998864  233489999999999999999999999999999999999988  8999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhcCCCCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHH
Q 018995          166 AEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQ  245 (348)
Q Consensus       166 aE~Qa~eV~rRq~k~res~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeAER~YHq  245 (348)
                      .+.....+.+-+.+  ++  .+..       +.++++.+.....+..+-..-|-.+.+-...+-..-|..+|++...||+
T Consensus       147 yd~~~~k~~k~~~~--~~--~~~~-------~~~l~~a~~~f~~~~~~l~~~l~~l~~~~~~~l~~~l~~~i~~q~~~~~  215 (229)
T PF03114_consen  147 YDSARSKLEKLRKK--KS--KSSK-------EEKLEEAKEEFEALNEELKEELPKLFAKRQDILEPCLQSFIEAQLQYFQ  215 (229)
T ss_dssp             HHHHHHHHHHCHTT--SS--BTHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhh--hc--cccc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99988887765443  11  2222       7777777777778888888889988877777777899999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 018995          246 RVLQILDQLEGEM  258 (348)
Q Consensus       246 rv~~ILd~L~~eM  258 (348)
                      .+.++|..|..++
T Consensus       216 ~~~~~l~~l~~~l  228 (229)
T PF03114_consen  216 QLYQILEELQPQL  228 (229)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999998775

Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....

>smart00721 BAR BAR domain

Probab=98.58  E-value=2.5e-05  Score=68.08  Aligned_cols=226  Identities=17%  Similarity=0.250  Sum_probs=157.8

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCcceechHHHhhHHHHHHHHhhhhhchhhhhhhhhccceee---eecceeehhhhhhhh
Q 018995           14 QVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYI---VTGSKQVEIGTKLSE   90 (348)
Q Consensus        14 qVAkQQQAV~Kqfg~~gy~~~d~~v~DEaElq~HQ~LekLY~STRaaKhFQrdIVRgvEGfi---s~gsKq~Ei~~KLae   90 (348)
                      ++.|--|.|.-.+|++     +-..+||.=.+.-++++.+...+       ..|++.+++|+   .....-..+...+++
T Consensus         5 ~~~R~~q~~~ek~G~~-----e~T~~D~~f~~le~~~~~~~~~~-------~kl~k~~~~y~q~~~~~~~~~~~~~~~~~   72 (239)
T smart00721        5 QFNRAKQKVGEKVGKA-----EKTKLDEDFEELERRFDTTEAEI-------EKLQKDTKLYLQPNPAVRAKLASQKKLSK   72 (239)
T ss_pred             hhHHHHHHHHHHhCCC-----CcCcCCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHcCCChhhHHHHHHHHHHHH
Confidence            3555566777788822     34444665333333444333332       35666667776   444444455555555


Q ss_pred             hhhh-ccC--CCC-CCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHH
Q 018995           91 DSRK-YGS--DNT-CTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA  166 (348)
Q Consensus        91 Dc~K-YG~--en~-~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEa  166 (348)
                      ..+. |+.  ... +.....+..+-..||.+...+-.-+..+ .-+..-+..|++.-+. .-+.+++....++++.|.+.
T Consensus        73 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~-~~~~~~~~~~kk~~~~~lDy  150 (239)
T smart00721       73 SLGEVYEGGDDGEGLGADSSYGKALDKLGEALKKLLQVEESL-SQVKRTFILPLLNFLL-GEFKEIKKARKKLERKLLDY  150 (239)
T ss_pred             HHHHHhcCCCCccccCchhHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHhhhhHHHHHH-HHhHHHHHHHHHHHhHHHHH
Confidence            5444 333  111 2334457888889999999998888888 6666777777776653 34678888888888888888


Q ss_pred             HHHHHHHHHHhhhhcCCCCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHH
Q 018995          167 EAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQR  246 (348)
Q Consensus       167 E~Qa~eV~rRq~k~res~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeAER~YHqr  246 (348)
                      ++.-..+.+=+.+.+    .+.+- ||..||.+|...+.....+.-+...-|..+.+=-.-.-..-|.+.+++...||..
T Consensus       151 D~~~~kl~~~~~~~~----~~~~~-kl~~~e~el~~ak~~fe~~~~~l~~~l~~l~~~~~~~~~~~l~~~~~aq~~y~~~  225 (239)
T smart00721      151 DSARHKLKKAKKSKE----KKKDE-KLAKAEEELRKAKQEFEESNAQLVEELPQLVASRVDFFVNCLQALIEAQLNFHRE  225 (239)
T ss_pred             HHHHHHHHHHHHhcc----CChhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHH
Confidence            877776654433322    12123 9999999999999999999999999999997666666788999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 018995          247 VLQILDQLEGEM  258 (348)
Q Consensus       247 v~~ILd~L~~eM  258 (348)
                      +..+|.+|...|
T Consensus       226 ~~~~l~~l~~~l  237 (239)
T smart00721      226 SYKLLQQLQQQL  237 (239)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998765

>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins

Probab=97.63  E-value=0.0034  Score=57.98  Aligned_cols=201  Identities=17%  Similarity=0.270  Sum_probs=136.1

Q ss_pred             hHHHhhH-HHHHHHHhhhhhchhhhhhhhhccceeeeecceeehhhhhhhhhhhhccCCCCCCCchHHHHHHHHhHHHHH
Q 018995           41 EAELHQH-QRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARA  119 (348)
Q Consensus        41 EaElq~H-Q~LekLY~STRaaKhFQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~  119 (348)
                      |..+.+| ..|+||+.+-+              +++..|.-.++--..+++.-++.|..-...+...++.+-..||.+-.
T Consensus         8 ee~l~~~~~~l~Kl~K~~k--------------~~~~~g~~~~~~~~~F~~aL~~~g~~~~~~~~~~i~~~l~kF~~~l~   73 (215)
T cd07604           8 EESLEGDRVGLQKLKKAVK--------------AIHNSGLAHVENELQFAEALEKLGSKALSREEEDLGAAFLKFSVFTK   73 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHH--------------HHHHhHHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHHHHHHH
Confidence            3444444 46777765544              45566666666677777777778866432233358888899999999


Q ss_pred             HHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhh-hHHHHHHHHHHHHHHHHHHHHHHhhh-hcCCC-CChhhhhhhHHH
Q 018995          120 QMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQAIEVSKRQAK-VRETP-GNPDLALKLDAA  196 (348)
Q Consensus       120 ~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDAR-hLaqRYdRmRQEaE~Qa~eV~rRq~k-~res~-gn~e~~~KLq~A  196 (348)
                      .|++.+++|..-+..-|..||-..+.+ .|.+++ -+..+||+-+.+-|.-..-+.|.+.+ +++.. .-+|  ...+.|
T Consensus        74 El~~~~~~L~~~~~~~i~~pL~~f~k~-dL~~~k~e~KK~fdK~s~~ye~~~~k~~k~Kk~~~~~~~~~r~e--~~~~e~  150 (215)
T cd07604          74 ELAALFKNLMQNLNNIIMFPLDSLLKG-DLKGSKGDLKKPFDKAWKDYETKASKIEKEKKQLAKEAGMIRTE--ITGAEI  150 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhcchh--hhhhhH
Confidence            999999999999999999999999998 778887 99999999999988766555554333 11100 0001  011122


Q ss_pred             HHhHHHHHHHHHHhcHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 018995          197 EVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEM  258 (348)
Q Consensus       197 E~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeAER~YHqrv~~ILd~L~~eM  258 (348)
                      +.-|.--++..--.--+=...+..|++-+-.==|+.|++.+.|--+|++.-.++|+.++-=|
T Consensus       151 ~~~l~~~R~~F~~~~~~yv~~l~~lq~kKk~e~Le~ll~~~~Aq~~fF~~G~~ll~~l~p~~  212 (215)
T cd07604         151 AEEMEKERRMFQLQMCEYLIKVNEIKTKKGVDLLQHLVEYYHAQNSYFQDGLKVIEHFRPYI  212 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            22222222222222222356777787666666679999999999999999999999987433

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate

>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]

Probab=97.41  E-value=0.026  Score=56.34  Aligned_cols=289  Identities=19%  Similarity=0.315  Sum_probs=157.9

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCCcceechH--HHh-----hHHHHHHHHhhhhh---------chhhhhhhhhccceee
Q 018995           12 REQVARQQQAVFKQFGGGGYGGSDNVVTDEA--ELH-----QHQRLERLYISTRA---------GKHFQRDIVRGVEGYI   75 (348)
Q Consensus        12 REqVAkQQQAV~Kqfg~~gy~~~d~~v~DEa--Elq-----~HQ~LekLY~STRa---------aKhFQrdIVRgvEGfi   75 (348)
                      +.|..|-+|-+=-.|||.     ...=+|..  ||.     +.--+-+|+.+|--         ||----+++.-|-|-+
T Consensus         2 ~kqF~ka~Q~~sEK~gga-----e~TkLdDdF~eme~~vdvt~~~v~~i~~~tteylqpnpa~rakl~~~n~lsKvrG~~   76 (366)
T KOG1118|consen    2 KKQFNKASQWTSEKVGGA-----EGTKLDDDFLEMEKEVDVTSKGVTKILAKTTEYLQPNPASRAKLAMLNTLSKVRGQV   76 (366)
T ss_pred             chHHHHHHHHhccccccc-----cCCcCChHHHHHHHhHHHHHHHHHHHHHhhHHhcCCChhhhhHHHHHHHHHHhcccc
Confidence            446667777888888832     22222322  222     23345566665521         2222236677777777


Q ss_pred             eecceeehhhhhhhhhhhhccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhH
Q 018995           76 VTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHL  155 (348)
Q Consensus        76 s~gsKq~Ei~~KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhL  155 (348)
                      -+--++.+.| -|++---|||-|=...  +.+..+-..||.+...|-.=.+.|---+---..+||.-.    -|-|++.+
T Consensus        77 k~~~ypq~e~-~Lg~~mik~gkeLg~d--Ss~g~tl~~~Gesm~~i~evk~sl~~~vkq~FldpL~~l----~~~elK~i  149 (366)
T KOG1118|consen   77 KEKGYPQTEG-LLGDVMIKHGKELGDD--SSFGHTLIDAGESMREIGEVKDSLDDNVKQNFLDPLQNL----QLKELKDI  149 (366)
T ss_pred             cCCCCccchh-HHHHHHHHHHHhcCCC--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh----hHHHHHHH
Confidence            6655554432 4666677888886522  236677788999999888777777777777778888643    23344444


Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHhhhhcCCCCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHHHhhHHHHHHHH
Q 018995          156 AQRYDRMRQEAEAQAIEVS-KRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLI  234 (348)
Q Consensus       156 aqRYdRmRQEaE~Qa~eV~-rRq~k~res~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQRLi  234 (348)
                      -+.-.+|  |-..+.-|-. +|+-|.+      |  --|..|..|..|-|.-.    +.---++..+|.-|    .+-|.
T Consensus       150 ~hh~KKL--EgRRldyD~kkkk~~K~~------d--EelrqA~eKfEESkE~a----E~sM~nlle~d~eq----vsqL~  211 (366)
T KOG1118|consen  150 QHHRKKL--EGRRLDYDYKKKKQGKIK------D--EELRQALEKFEESKELA----EDSMFNLLENDVEQ----VSQLS  211 (366)
T ss_pred             HHHHHHh--hhhhhHHHHHHHHhccCC------h--HHHHHHHHHHHHHHHHH----HHHHHHHHhcCHHH----HHHHH
Confidence            4433333  1122223322 2233322      2  23777888888765310    11112223333322    34577


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHhhhh------hhhcCCCCCCCCCC-CCCCCCcccccccccc--------------
Q 018995          235 AMVEAERTYHQRVLQILDQLEGEMLSERQ------RIEAAPTAPTPSVD-TMPPPPAYEEVNGIYA--------------  293 (348)
Q Consensus       235 aMVeAER~YHqrv~~ILd~L~~eMvsErq------~~Es~~~~~~~~~~-~~~pPpsyee~Ng~~~--------------  293 (348)
                      ++|+|+-.||+..+.||+.|.--.-+-..      +.|..|. +-++.. .+.-||.  +.||.+.              
T Consensus       212 ~Li~aqLdfhrqs~~iL~~l~~~l~~r~r~a~~~prrey~p~-~~~an~f~p~~~p~--~~~g~~s~T~~t~~~ass~~~  288 (366)
T KOG1118|consen  212 ALIQAQLDFHRQSTQILQELQMKLFSRIRDASSQPRREYVPR-SVLANEFAPSGPPI--QLNGKLSKTTSTPQSASSPSN  288 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCchhhcCCc-ccccccCCCCCCcc--ccCCCCCcCccCccccCCccc
Confidence            99999999999999999999865433221      1111111 001000 0111221  2222111              


Q ss_pred             -cCCC----CCCCCccceeeEEecccCCCCCCceeeeeeCCEEEE
Q 018995          294 -SQTH----NGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVV  333 (348)
Q Consensus       294 -s~~~----~~~~~~~~yFlaev~hpF~aesegELsLsvGDyVVV  333 (348)
                       ++..    +.+...+.-=.-.++..|+++.||||-|.-||.|.|
T Consensus       289 is~~p~~~p~rs~s~~~~p~cralYdFepenEgEL~fkeGDlI~l  333 (366)
T KOG1118|consen  289 ISPKPPSTPNRSASQMDQPCCRALYDFEPENEGELDFKEGDLITL  333 (366)
T ss_pred             CCCCCCCCCCcccCcccchhheeeeccCCCCCCccCcccCceeee
Confidence             1111    111133444556889999999999999999999865

>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins

Probab=97.37  E-value=0.034  Score=52.24  Aligned_cols=162  Identities=15%  Similarity=0.219  Sum_probs=112.8

Q ss_pred             hhhhhhhhhccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHH
Q 018995           86 TKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQE  165 (348)
Q Consensus        86 ~KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQE  165 (348)
                      .-|+.---+||.+=.  .+..|.+|-..||.+-+.|=.+|.++-..+-+.|.+||+....+        --.-+.+-|.-
T Consensus        60 ~~Lg~~M~~~g~~l~--~~s~lg~~L~~~g~a~~~ia~~~~~~d~~i~~~fl~pL~~~le~--------dik~i~k~RKk  129 (244)
T cd07595          60 YGLAQSMLESSKELP--DDSLLGKVLKLCGEAQNTLARELVDHEMNVEEDVLSPLQNILEV--------EIPNIQKQKKR  129 (244)
T ss_pred             HHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH
Confidence            345666667777753  45579999999999999999999999999999999999987652        12345555555


Q ss_pred             HHHH--HHHHHHHhhh-h-cCCCCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHHHhhHHHHHHHHHHHHhHH
Q 018995          166 AEAQ--AIEVSKRQAK-V-RETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAER  241 (348)
Q Consensus       166 aE~Q--a~eV~rRq~k-~-res~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeAER  241 (348)
                      ++.-  .-|.+|++.+ . |+++ ...+..|....+..|.+...-+..---.|++.|-.|=+=-- =-+.-|..+|+|..
T Consensus       130 Le~~RLd~D~~k~r~~ka~k~~~-~~~~~~K~~~l~eE~e~ae~k~e~~~e~~~~~M~~~l~~E~-e~~~~l~~lv~aQl  207 (244)
T cd07595         130 LSKLVLDMDSARSRYNAAHKSSG-GQGAAAKVDALKDEYEEAELKLEQCRDALATDMYEFLAKEA-EIASYLIDLIEAQR  207 (244)
T ss_pred             HhhhhHHHHHHHHHHHhcccccc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccH-HHHHHHHHHHHHHH
Confidence            5543  3455666553 2 3333 34455666655666666555555555566677765532200 01466899999999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 018995          242 TYHQRVLQILDQLEGEML  259 (348)
Q Consensus       242 ~YHqrv~~ILd~L~~eMv  259 (348)
                      .||.+.++||+.+..+|-
T Consensus       208 ~YH~~a~e~L~~l~~~l~  225 (244)
T cd07595         208 EYHRTALSVLEAVLPELQ  225 (244)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999999986

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and

>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1

Probab=97.33  E-value=0.0079  Score=55.48  Aligned_cols=176  Identities=14%  Similarity=0.200  Sum_probs=133.1

Q ss_pred             hhccceeeeecceeehhhhhhhhhhhhccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCC
Q 018995           68 VRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGA  147 (348)
Q Consensus        68 VRgvEGfis~gsKq~Ei~~KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~Ga  147 (348)
                      ++.+=++|..|....--..+++..-+.+|.+.+  .+..++.+-..|+.+-..|++.|..|+.-...-+..||-..+.+ 
T Consensus        22 ~K~~k~~~~agk~~~~a~~~F~~~L~~f~~~~~--~D~~i~~~l~kFs~~l~ei~~~~~~Ll~~~~~~l~~~L~~F~k~-   98 (200)
T cd07639          22 VKLGSGMLEGGRHYCAASRAFVDGLCDLAHHGP--KDPMMAECLEKFSDGLNHILDSHAELLEATQFSFKQQLQLLVKE-   98 (200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence            344444555666666666777777888887643  33347778888999999999999999999999999999998876 


Q ss_pred             CchhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHHHhhH
Q 018995          148 PLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQR  227 (348)
Q Consensus       148 PLEDARhLaqRYdRmRQEaE~Qa~eV~rRq~k~res~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQr  227 (348)
                      +|-+++-...+|||..+.-++-..--.+=. |.+        ..-++.|+.-|.--++...-..-+=+..+..|++-.-=
T Consensus        99 dl~~vKe~kK~FdK~s~~~d~al~K~~~~~-k~k--------~~e~~Ea~~~l~~~R~~F~~~~ldYV~~in~iq~kKkf  169 (200)
T cd07639          99 DLRGFRDARKEFERGAESLEAALQHNAETP-RRK--------AQEVEEAAAALLGARATFRDRALDYALQINVIEDKKKF  169 (200)
T ss_pred             hhHHHHHHhhhHhhcchhHHHHHHHHhhcc-ccc--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            678899999999999999887533222210 111        11346777777777777776667777778888776666


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018995          228 LTLQRLIAMVEAERTYHQRVLQILDQLE  255 (348)
Q Consensus       228 lTlQRLiaMVeAER~YHqrv~~ILd~L~  255 (348)
                      -=|+.|++.+.|=.+|++.--++|++|+
T Consensus       170 efle~ll~~m~a~~tfF~qG~ell~~l~  197 (200)
T cd07639         170 DILEFMLQLMEAQASFFQQGHEALSALH  197 (200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            6679999999999999999999999886

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2

Probab=97.27  E-value=0.03  Score=53.39  Aligned_cols=198  Identities=13%  Similarity=0.152  Sum_probs=121.1

Q ss_pred             HHHHHHHHhhhhhchhhhhhhhhccceeeee--cceeehh-----hhhhhhhhhhccCCCCCCCchHHHHHHHHhHHHHH
Q 018995           47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVT--GSKQVEI-----GTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARA  119 (348)
Q Consensus        47 HQ~LekLY~STRaaKhFQrdIVRgvEGfis~--gsKq~Ei-----~~KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~  119 (348)
                      .++|||---+|+.+   =-+|++-++.++--  |+.-=-.     .+-|++.+-+||.+=+  .+..|.+|-..||.+-+
T Consensus        17 ~~~le~r~D~~k~~---~~~i~kk~~~~LQpnp~~r~ekr~~k~P~~~L~q~M~~~g~elg--~~s~lg~aL~~~gea~~   91 (248)
T cd07619          17 LLQVEKRLELVKQV---SHSTHKKLTACLQGQQGVDADKRSKKLPLTTLAQCMVEGAAVLG--DDSLLGKMLKLCGETED   91 (248)
T ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHHhCCCcHHHHHHhccCCCHHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHH
Confidence            45666665555443   33555555555422  1100011     1258999999999954  35679999999999999


Q ss_pred             HHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhhh--hcCCC--CChh-hhhhhH
Q 018995          120 QMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAK--VRETP--GNPD-LALKLD  194 (348)
Q Consensus       120 ~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEaE~Qa~eV~rRq~k--~res~--gn~e-~~~KLq  194 (348)
                      .|=.+|-++---+-..|.+||+....+- |-.+-|-...-...|-+.     |..|+|.+  ++.++  +|.+ +..|.+
T Consensus        92 kla~a~~~~d~~i~~~fl~PL~~~le~d-lk~I~k~RK~Le~~RLD~-----D~~K~r~~~a~~~~~~~~~~~~~~~k~e  165 (248)
T cd07619          92 KLAQELILFELQIERDVVEPLYVLAEVE-IPNIQKQRKHLAKLVLDM-----DSSRTRWQQSSKSSGLSSNLQPTGAKAD  165 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHhhHhhH-----HHHHHHHHhccccccccccccCCCCccH
Confidence            9999999999999999999999887642 222333333333333333     23444443  11111  1111 133444


Q ss_pred             HHHHhHHHHHHHHH----HhcHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 018995          195 AAEVKLHDLKSNMA----ILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLS  260 (348)
Q Consensus       195 ~AE~Kl~ELks~Ma----~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeAER~YHqrv~~ILd~L~~eMvs  260 (348)
                      .+...+.+....|.    .+=-++..-|.-+..|=..     |+..|+|=-.||.+.++||+.|..+|-.
T Consensus       166 ~lr~e~E~ae~~~e~~kd~~~~~m~~~l~~e~e~~~~-----l~~Lv~AQleYHr~A~eiLe~l~~~i~~  230 (248)
T cd07619         166 ALREEMEEAANRMEICRDQLSADMYSFVAKEIDYANY-----FQTLIEVQAEYHRKSLELLQSVLPQIKA  230 (248)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444454444444    2233333444444443322     9999999999999999999999988754

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1

Probab=97.17  E-value=0.027  Score=53.03  Aligned_cols=160  Identities=14%  Similarity=0.230  Sum_probs=108.9

Q ss_pred             ecceeehhhhhhhhhhhhccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHH
Q 018995           77 TGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLA  156 (348)
Q Consensus        77 ~gsKq~Ei~~KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLa  156 (348)
                      .+.+|=  ..-|++..-+||.+=.  .++.+..|-..||.|.+.|=.-|..|..-..+-+..|||.-..+        --
T Consensus        65 ~~~~~~--~~~Lg~~M~~~g~~~g--~~S~~G~aL~~~g~a~~kia~~~~~~i~~~~~~Fl~PL~~~le~--------di  132 (229)
T cd07616          65 PSRMNN--PELLGQYMIDAGNEFG--PGTAYGNALIKCGETQKQIGTADRELIQTSAINFLTPLRNFIEG--------DY  132 (229)
T ss_pred             CCCCCh--HHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HH
Confidence            344443  3568888999999954  45679999999999999999999999988888999999998876        22


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhcC---CCCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHH-HhhHHHHHH
Q 018995          157 QRYDRMRQEAEAQAIEVSKRQAKVRE---TPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVES-QQQRLTLQR  232 (348)
Q Consensus       157 qRYdRmRQEaE~Qa~eV~rRq~k~re---s~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEa-QQQrlTlQR  232 (348)
                      ..|.+-|.-+|.--.+.--.++|.+-   ....+..-.+|..||.|+.+-+.-+       ...|--|-. --  =-+.=
T Consensus       133 k~i~k~RKkLe~rRLdyD~~K~r~~kAk~~~~~~~~e~elr~ae~efees~E~a-------~~~m~~i~~~~~--e~~~~  203 (229)
T cd07616         133 KTITKERKLLQNKRLDLDAAKTRLKKAKVAEARAAAEQELRITQSEFDRQAEIT-------RLLLEGISSTHA--HHLRC  203 (229)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhcchHHHHHHHHHHHHHHHHHH-------HHHHHhhhhcCh--HHHHH
Confidence            34566677777665544333333322   1112233456667787777644322       222222210 00  02456


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHH
Q 018995          233 LIAMVEAERTYHQRVLQILDQLEGE  257 (348)
Q Consensus       233 LiaMVeAER~YHqrv~~ILd~L~~e  257 (348)
                      |.+.|+|.-.||....+||..|..+
T Consensus       204 L~~lv~AQl~Yh~~~~e~L~~L~~~  228 (229)
T cd07616         204 LNDFVEAQMTYYAQCYQYMLDLQKQ  228 (229)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            8899999999999999999999865

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact

>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins

Probab=97.12  E-value=0.025  Score=51.68  Aligned_cols=178  Identities=12%  Similarity=0.237  Sum_probs=132.0

Q ss_pred             hhhhccceeeeecceeehhhhhhhhhhhhccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhc
Q 018995           66 DIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVL  145 (348)
Q Consensus        66 dIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~  145 (348)
                      .|++++=++|..|.....-...++..-...|.+  |..+..++-+-..||.+-..|+..|..|+.-...-|.+||+..+.
T Consensus        20 kl~K~~~~~~~ag~~~~~a~~~F~~~L~~~~~~--~~~d~~i~~~l~kF~~~l~el~~~~~~L~~q~~~~i~~pL~~F~k   97 (200)
T cd07603          20 KLLKLCNGMVDSGKTYVNANSLFVNSLNDLSDY--FRDDSLVQNCLNKFIQALQEMNNFHTILLDQAQRTVSTQLQNFVK   97 (200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444455555655556666677766677765  444556888888999999999999999999999999999999998


Q ss_pred             CCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHHHh
Q 018995          146 GAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQ  225 (348)
Q Consensus       146 GaPLEDARhLaqRYdRmRQEaE~Qa~eV~rRq~k~res~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQ  225 (348)
                      + .|-+.+-+..+||+...+-++-..--+. ..|.|     |   .-++.|+.-|.+-+++.--..-+=..++..|.+-.
T Consensus        98 ~-dL~~vKE~kk~Fdk~s~~yd~al~k~~~-~~K~K-----~---~~~~Ea~~~L~~~Rk~f~~~sldyv~~in~iq~kK  167 (200)
T cd07603          98 E-DIKKVKESKKHFEKISDDLDNALVKNAQ-APRSK-----P---QEAEEATNILTATRSCFRHTALDYVLQINVLQAKK  167 (200)
T ss_pred             H-hhHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCC-----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7 5778999999999999988875442111 22322     1   13455666677777776666667777788887766


Q ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018995          226 QRLTLQRLIAMVEAERTYHQRVLQILDQLE  255 (348)
Q Consensus       226 QrlTlQRLiaMVeAER~YHqrv~~ILd~L~  255 (348)
                      -=-=|+.|++.+.|=-+|.+.-.+++++|+
T Consensus       168 k~e~le~ll~~~~A~~tff~qG~el~~dl~  197 (200)
T cd07603         168 RHEILSTLLSYMHAQFTFFHQGYDLLEDLE  197 (200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence            666679999999999999988888888775

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins

Probab=97.04  E-value=0.042  Score=51.86  Aligned_cols=222  Identities=18%  Similarity=0.224  Sum_probs=136.1

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCcc--eechHHHhhHHHHHHHHhhhhhchhhhhhhhhccceeeeecceee-hhhhhhh
Q 018995           13 EQVARQQQAVFKQFGGGGYGGSDNV--VTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQV-EIGTKLS   89 (348)
Q Consensus        13 EqVAkQQQAV~Kqfg~~gy~~~d~~--v~DEaElq~HQ~LekLY~STRaaKhFQrdIVRgvEGfis~gsKq~-Ei~~KLa   89 (348)
                      +.|=+-=+.|-|+|..-||--.-++  .+.+---.-+.+..-|=..| ...+.|.-++-     -.++.|+= -...-|+
T Consensus        11 k~~~~~~l~vt~~ye~esYDYP~n~~es~~~~~~~~~~k~~~l~~~t-~~~e~~~~l~~-----~~~~~~~pkTl~~aLs   84 (242)
T cd07600          11 KLVYKKILKVTKTYENESYDYPPNLTESISDFSKTIGSKVSELSKAT-SPTEAQKVLLG-----TPAPAKLPKTLNHALS   84 (242)
T ss_pred             HHHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHhhHHHHHHHhhcC-ChhhhhhhhcC-----CCCCCCCCCcHHHHHH
Confidence            4455556688899998888322111  12222222344454444444 34556655532     11111111 1234566


Q ss_pred             hhhhhccCCCCC---CCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHH
Q 018995           90 EDSRKYGSDNTC---TSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA  166 (348)
Q Consensus        90 eDc~KYG~en~~---~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEa  166 (348)
                      +.+-++|.+-..   .+++.|++|-..||.+...|=.-|..+-..+.+-..+|||.-..+-        -..+.+.|.-+
T Consensus        85 ~~m~~~~~~l~~~~~~~~s~lg~aL~~~g~a~~kIa~ar~~~D~~I~~~Fl~pL~~~L~~d--------~k~i~k~RKkl  156 (242)
T cd07600          85 RAALASSLELKSLEPEDEDPLSKALGKYSDAEEKIAEARLEQDQLIQKEFNAKLRETLNTS--------FQKAHKARKKV  156 (242)
T ss_pred             HHHHHHHHHhCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH
Confidence            666666665432   2367899999999999999999999999999999999999876531        23567777777


Q ss_pred             HHHHHHHHHHhhhhcCC---CCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHH
Q 018995          167 EAQAIEVSKRQAKVRET---PGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTY  243 (348)
Q Consensus       167 E~Qa~eV~rRq~k~res---~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeAER~Y  243 (348)
                      |.--.+.--.+.|.+..   ....+--..++.||.++.+-+       -.|.-.|..|-.-=  =-++=|..+|+|.-.|
T Consensus       157 e~~RLd~D~~K~~~~ka~~~~k~~~~~~e~E~aEdef~~a~-------E~a~~~M~~il~~~--e~i~~L~~fv~AQl~Y  227 (242)
T cd07600         157 EDKRLQLDTARAELKSAEPAEKQEAARVEVETAEDEFVSAT-------EEAVELMKEVLDNP--EPLQLLKELVKAQLAY  227 (242)
T ss_pred             HHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhH-------HHHHHHHHHHHhhh--HHHHHHHHHHHHHHHH
Confidence            77655443333333222   112233445666777776655       34444555443321  1367788999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 018995          244 HQRVLQILDQLEGE  257 (348)
Q Consensus       244 Hqrv~~ILd~L~~e  257 (348)
                      |....++|..|..+
T Consensus       228 h~~~~e~L~~l~~~  241 (242)
T cd07600         228 HKTAAELLEELLSV  241 (242)
T ss_pred             HHHHHHHHHHHhhc
Confidence            99999999998764

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC)

Probab=97.01  E-value=0.04  Score=50.67  Aligned_cols=183  Identities=15%  Similarity=0.205  Sum_probs=139.6

Q ss_pred             HHHHHHHHhhhhhchhhhhhhhhccceeeeecceeehhhhhhhhhhhhccCCCCCCCchHHH----HHHHHhHHHHHHHH
Q 018995           47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLS----KAALSYGRARAQME  122 (348)
Q Consensus        47 HQ~LekLY~STRaaKhFQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~en~~~~~~~La----rAa~~yg~a~~~mE  122 (348)
                      -.+|+|||.+-+.--+=+++..              --...+|..-+.||..   +.+..+.    .+-..|+.+-..|+
T Consensus        14 ~~~~~Kl~K~~~~~~~a~~~~~--------------~a~~~Fa~~L~~f~~~---~dD~~~~a~gg~~l~kF~~~l~ei~   76 (202)
T cd07606          14 RDRSLKLYKGCRKYRDALGEAY--------------DGDSAFAESLEEFGGG---HDDPISVAVGGPVMTKFTSALREIG   76 (202)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHhcCC---CCChHHHhccchHHHHHHHHHHHHH
Confidence            4577888877665322222222              2233455555666542   2333332    46778999999999


Q ss_pred             HHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCChhhhhhhHHHHHhHHH
Q 018995          123 KERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHD  202 (348)
Q Consensus       123 kEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEaE~Qa~eV~rRq~k~res~gn~e~~~KLq~AE~Kl~E  202 (348)
                      ..|+.|+.-...-+..||...+- --|-+++-+..|||+-..+-++-..-.++-..+.|+        .+++.|+..|.-
T Consensus        77 ~~~~~L~~q~~~~l~~pL~~F~k-~Dl~~vKe~kK~FdK~s~~yd~al~K~~~l~k~~k~--------~~~~ea~~~l~~  147 (202)
T cd07606          77 SYKEVLRSQVEHMLNDRLAQFAD-TDLQEVKDARRRFDKASLDYEQARSKFLSLTKDAKP--------EILAAAEEDLGT  147 (202)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCch--------HHHHHHHHHHHH
Confidence            99999999999999999999998 467789999999999999999876666554333331        346789999999


Q ss_pred             HHHHHHHhcHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018995          203 LKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLE  255 (348)
Q Consensus       203 Lks~Ma~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeAER~YHqrv~~ILd~L~  255 (348)
                      .++..--..-+=..++..|++-.-==.|+.|++.+.|=-+|++.-.++|.+|+
T Consensus       148 ~R~~F~~~~ldyv~~ln~~q~kKk~e~le~ll~~m~A~~tFF~qG~ell~~l~  200 (202)
T cd07606         148 TRSAFETARFDLMNRLHAADARKRVEFLERLSGSMDAHLAFFKSGYELLRQLE  200 (202)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999988999999999999888777889999999999999999999988774

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3

Probab=96.98  E-value=0.041  Score=50.51  Aligned_cols=157  Identities=15%  Similarity=0.286  Sum_probs=121.7

Q ss_pred             hhhhhhhhccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHH
Q 018995           87 KLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA  166 (348)
Q Consensus        87 KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEa  166 (348)
                      .++..-+.++.+  |..+..++.+-..||.+-..|+..|..|+.-...-+.+||+.-+.+ .|-..+-+..+||+....-
T Consensus        41 ~F~~~l~d~~~~--~~gd~~i~~~L~kF~~~l~ei~~~~~~l~~q~e~~l~~pL~~F~k~-dL~~~KE~rK~Fdk~se~y  117 (200)
T cd07637          41 LFVSGIRDLSQQ--CKKDEMISECLDKFGDSLQEMVNYHMILFDQAQRSVRQQLHSFVKE-DVRKFKETKKQFDKVREDL  117 (200)
T ss_pred             HHHHHHHHHHHH--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHH
Confidence            333333334433  3344567788888999999999999999999999999999999886 5678889999999999988


Q ss_pred             HHHHHHHHHHhhhhcCCCCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHH
Q 018995          167 EAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQR  246 (348)
Q Consensus       167 E~Qa~eV~rRq~k~res~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeAER~YHqr  246 (348)
                      ++-..-.+  ++|.++    |   .-|+.|+.-|.+-+++.--..-+=..++..|++-.-=-=|+.|++.+.|=-+|+..
T Consensus       118 d~al~k~~--~~k~kk----~---~~l~Ea~~~L~~~Rk~f~~asLdyv~~ln~iq~kKk~e~le~ll~~~~a~~tff~q  188 (200)
T cd07637         118 EIALVKNA--QAPRHK----P---HEVEEATSTLTITRKCFRHLALDYVLQINVLQAKKKFEILDSMLSFMHAQYTFFQQ  188 (200)
T ss_pred             HHHHHHHh--hcCCCC----h---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            77655433  233222    2   24577777888888877777777888888888877666779999999999999999


Q ss_pred             HHHHHHHHH
Q 018995          247 VLQILDQLE  255 (348)
Q Consensus       247 v~~ILd~L~  255 (348)
                      --++|++|+
T Consensus       189 G~el~~~~~  197 (200)
T cd07637         189 GYSLLHELD  197 (200)
T ss_pred             HHHHHHhhc
Confidence            999999886

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins

Probab=96.95  E-value=0.032  Score=51.90  Aligned_cols=141  Identities=16%  Similarity=0.243  Sum_probs=111.5

Q ss_pred             HHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q 018995          106 TLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPG  185 (348)
Q Consensus       106 ~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEaE~Qa~eV~rRq~k~res~g  185 (348)
                      .++-+-..||..-..||.+|+.|+.-....+..||..-+. -.|-+++-...+||+-..+-+.-..--++=..|.|+   
T Consensus        64 ~i~~~L~kF~~~l~ei~~~r~~L~~q~~~~l~~pL~~F~k-~dl~~~ke~kk~FdK~se~~~~al~k~~~lsk~kk~---  139 (207)
T cd07602          64 EIAESLKEFGRLIETVEDERDRMLENAEEQLIEPLEKFRK-EQIGGAKEEKKKFDKETEKFCSSLEKHLNLSTKKKE---  139 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCc---
Confidence            3677788999999999999999999999999999999987 788999999999999999988765543322222121   


Q ss_pred             ChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018995          186 NPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLE  255 (348)
Q Consensus       186 n~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeAER~YHqrv~~ILd~L~  255 (348)
                           .-++.|+.-|.--+++.--..-+=..++..|++-..===|+.|++.+.|=-+|...--+++.+++
T Consensus       140 -----~~~~ea~~~l~~~r~~f~~~~l~Yv~~l~~vq~rKkfefle~ll~~m~a~~tff~qG~el~~d~~  204 (207)
T cd07602         140 -----NQLQEADAQLDMERRNFHQASLEYVFKLQEVQERKKFEFVETLLSFMYGWLTFYHQGHEVAKDFK  204 (207)
T ss_pred             -----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence                 23667777777777777766677778888888766555668899999999999888888887765

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1

>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like

Probab=96.94  E-value=0.03  Score=52.22  Aligned_cols=141  Identities=14%  Similarity=0.216  Sum_probs=112.1

Q ss_pred             HHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q 018995          106 TLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPG  185 (348)
Q Consensus       106 ~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEaE~Qa~eV~rRq~k~res~g  185 (348)
                      .++-+-..|+.--..||.+|+.|+.-...-|..||-..+.+ .|-+++-...+||+-...-++-..--..-..+.++   
T Consensus        64 ~i~~~l~~Fs~~l~el~~~~~~L~~~~~~~l~~pL~~f~k~-dl~~vKe~kK~FDK~se~y~~aleK~l~l~~~kk~---  139 (207)
T cd07634          64 SIAQSLKEFARLLIAVEEERRRLIQNANDVLIAPLEKFRKE-QIGAAKDGKKKFDKESEKYYSILEKHLNLSAKKKE---  139 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHccchhHHHhHHHHHHHHHHhccccCCc---
Confidence            58889999999999999999999999999999999999876 57899999999999999997733322222112111   


Q ss_pred             ChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018995          186 NPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLE  255 (348)
Q Consensus       186 n~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeAER~YHqrv~~ILd~L~  255 (348)
                           .-++.|+.-|.--++..--..-+=+..+..|++-.-===|+.|++.+.|=.+|.+.-.+++++|+
T Consensus       140 -----~~~~ea~~~l~~~R~~F~~~~ldYv~~i~~vq~kKkfefle~ll~~~~A~~tff~qG~el~~dl~  204 (207)
T cd07634         140 -----SHLQRADTQIDREHQNFYEASLEYVFKIQEVQEKKKFEFVEPLLAFLQGLFTFYHEGYELAQEFA  204 (207)
T ss_pred             -----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence                 24577888888777777666667777777777766555679999999999999999999988875

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain

>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A

Probab=96.80  E-value=0.14  Score=47.80  Aligned_cols=150  Identities=23%  Similarity=0.354  Sum_probs=104.0

Q ss_pred             hhhhhhhhhccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHH
Q 018995           86 TKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQE  165 (348)
Q Consensus        86 ~KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQE  165 (348)
                      .-|++.+-+||.+=.  .++.++.|-..||.|..++=..|..+--.+.+-+.+||+.-..+-        -..|...|.-
T Consensus        67 ~~Lg~~M~~~g~elg--~~S~~G~aL~~~g~a~~kIa~~~~~~d~~v~~~fl~pL~~~l~~d--------ik~i~k~RKk  136 (223)
T cd07592          67 GLLGEVMLKYGRELG--EDSNFGQALVEVGEALKQLAEVKDSLDDNVKQNFLDPLQQLQDKD--------LKEINHHRKK  136 (223)
T ss_pred             cHHHHHHHHHHhhcC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Confidence            568999999999964  445799999999999999999999999999999999999654321        1245566666


Q ss_pred             HHHHHHHHHHHhhhhcCCCCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHH-HhhHHHHHHHHHHHHhHHHHH
Q 018995          166 AEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVES-QQQRLTLQRLIAMVEAERTYH  244 (348)
Q Consensus       166 aE~Qa~eV~rRq~k~res~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEa-QQQrlTlQRLiaMVeAER~YH  244 (348)
                      +|.--.+.--.++|...   .++  .-|..||.|+.+-+.-       |...|-.+=. .--  -+.=|...|+|...||
T Consensus       137 Le~rRLdyD~~k~k~~k---~~e--eEl~~Ae~kfe~s~E~-------a~~~M~~il~~e~e--~~~~L~~lveAQl~Yh  202 (223)
T cd07592         137 LEGRRLDYDYKKRKQGK---GPD--EELKQAEEKFEESKEL-------AENSMFNLLENDVE--QVSQLSALVEAQLDYH  202 (223)
T ss_pred             HHHHHHHHHHHHHhccc---Cch--HHHHHHHHHHHHHHHH-------HHHHHHHHHhCchH--HHHHHHHHHHHHHHHH
Confidence            66554443322223221   122  3466788887765543       2233322211 000  1355889999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 018995          245 QRVLQILDQLEGEML  259 (348)
Q Consensus       245 qrv~~ILd~L~~eMv  259 (348)
                      ...++||..|..+|-
T Consensus       203 ~~~~e~L~~l~~~L~  217 (223)
T cd07592         203 RQSAEILEELQSKLQ  217 (223)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999999886

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra

>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B

Probab=96.76  E-value=0.13  Score=48.23  Aligned_cols=152  Identities=18%  Similarity=0.314  Sum_probs=105.1

Q ss_pred             hhhhhhhhccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHH
Q 018995           87 KLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA  166 (348)
Q Consensus        87 KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEa  166 (348)
                      -|++-.-+||.+=.  .++.++.|-..||.|...|=.-|..+.-.+.+-+.+||+....+-        -.-|..-|.-+
T Consensus        73 ~Lg~~M~~~g~~lg--~~S~~g~aL~~~g~a~~kia~~~~~~~~~i~~~fl~pL~~~l~~d--------ik~i~k~RKkL  142 (229)
T cd07594          73 QLGQAMIEAGNDFG--PGTAYGSALIKVGQAQKKLGQAEREFIQTSSSNFLQPLRNFLEGD--------MKTISKERKLL  142 (229)
T ss_pred             HHHHHHHHHHhhCC--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH
Confidence            78888999999854  455799999999999999999999999999999999999876531        12345556666


Q ss_pred             HHHHHHHHHHhhhhcCCC---CChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHH-HhhHHHHHHHHHHHHhHHH
Q 018995          167 EAQAIEVSKRQAKVRETP---GNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVES-QQQRLTLQRLIAMVEAERT  242 (348)
Q Consensus       167 E~Qa~eV~rRq~k~res~---gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEa-QQQrlTlQRLiaMVeAER~  242 (348)
                      |.--.+.--.++|.+-+.   ..+..-..|+.||.|..+-+.       .|...|-.|-. .-  =-+.-|.+.|+|+.+
T Consensus       143 e~rRLd~D~~k~r~~kAk~~~~~~~~e~elr~Ae~kF~~~~E-------~a~~~M~~i~~~~~--~~~~~L~~lv~AQl~  213 (229)
T cd07594         143 ENKRLDLDACKTRVKKAKSAEAIEQAEQDLRVAQSEFDRQAE-------ITKLLLEGISSTHA--NHLRCLRDFVEAQMT  213 (229)
T ss_pred             HHHHHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHhcCc--hHHHHHHHHHHHHHH
Confidence            655444333333333221   112344567777777776543       33444443321 11  124568899999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 018995          243 YHQRVLQILDQLEGE  257 (348)
Q Consensus       243 YHqrv~~ILd~L~~e  257 (348)
                      ||....+||..|..+
T Consensus       214 Yh~q~~e~L~~l~~~  228 (229)
T cd07594         214 YYAQCYQYMDDLQRQ  228 (229)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999999764

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.

>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1

Probab=96.70  E-value=0.14  Score=48.20  Aligned_cols=148  Identities=19%  Similarity=0.265  Sum_probs=101.8

Q ss_pred             hhhhhhhhhccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHH
Q 018995           86 TKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQE  165 (348)
Q Consensus        86 ~KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQE  165 (348)
                      .-|++.--+||.+=.  .++.+..|-..||.|.++|=..|..+---..+-+.+||+....+-        -.-|..-|.-
T Consensus        67 ~~Lg~~M~~~G~elg--~dS~~G~aL~~~G~A~~kla~~~~~~~~~i~~~fl~PL~~~~~~d--------ik~i~k~RKk  136 (223)
T cd07613          67 ALLAEAMLKFGRELG--DECNFGPALGDVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKD--------LREIQHHLKK  136 (223)
T ss_pred             hHHHHHHHHHHhhCC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Confidence            457777788888854  455799999999999999999999999999999999999764321        1134445555


Q ss_pred             HHHHHHHHHHHhhhhcCCCCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHH---HHHhhHHHHHHHHHHHHhHHH
Q 018995          166 AEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAV---ESQQQRLTLQRLIAMVEAERT  242 (348)
Q Consensus       166 aE~Qa~eV~rRq~k~res~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aV---EaQQQrlTlQRLiaMVeAER~  242 (348)
                      .|..-.+.--.+.|.+  .. +  -.-|+.|+.|..+-+.-..       ..|-.+   |.-|    +.=|.+.|||+=.
T Consensus       137 Le~rRLd~D~~K~r~~--k~-~--eeElr~A~~kFees~E~a~-------~~M~n~l~~e~e~----~~~L~~fveAQl~  200 (223)
T cd07613         137 LEGRRLDFDYKKKRQG--KI-P--DEELRQALEKFDESKEIAE-------SSMFNLLEMDIEQ----VSQLSALVQAQLE  200 (223)
T ss_pred             HHHHHHhHHHHHHhCC--CC-c--HHHHHHHHHHHHHHHHHHH-------HHHHHHHHcCchH----HHHHHHHHHHHHH
Confidence            5544433332222221  11 1  3457888888887665332       222221   1111    2368899999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 018995          243 YHQRVLQILDQLEGEML  259 (348)
Q Consensus       243 YHqrv~~ILd~L~~eMv  259 (348)
                      ||+..++||..|..++.
T Consensus       201 Yh~qa~eiL~~l~~~l~  217 (223)
T cd07613         201 YHKQATQILQQVTVKLE  217 (223)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999999886

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i

>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2

Probab=96.59  E-value=0.14  Score=48.20  Aligned_cols=183  Identities=15%  Similarity=0.242  Sum_probs=123.6

Q ss_pred             HHHHHHHHhhhhhchhhhhhhhhccceeeeec--c-------------ee--ehhhhhhhhhhhhccCCCCCCCchHHHH
Q 018995           47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTG--S-------------KQ--VEIGTKLSEDSRKYGSDNTCTSGNTLSK  109 (348)
Q Consensus        47 HQ~LekLY~STRaaKhFQrdIVRgvEGfis~g--s-------------Kq--~Ei~~KLaeDc~KYG~en~~~~~~~Lar  109 (348)
                      .++|++.--+|+.+   =.+|++.+|-|+---  +             +.  .--..-|++..-+||.+=.  .++.+..
T Consensus        19 f~~l~~~~D~tk~~---~~~i~~~t~~~LqPNp~~R~~~~~~~k~~~k~~~~~~~~~~Lg~~M~~~g~~~g--~~s~~G~   93 (220)
T cd07617          19 FENLLARADSTKNW---TEKILRQTEVLLQPNPSARVEEFLYEKLDRKVPSRVTNAELLGQYMTEAANDFG--PGTPYGK   93 (220)
T ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHHhCCChhhhHHHHHHHHHhccCCCCCChHHHHHHHHHHHHHhcC--CCCchHH
Confidence            45666666666543   345666665554221  1             00  1123448888889998854  4556999


Q ss_pred             HHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCChhh
Q 018995          110 AALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDL  189 (348)
Q Consensus       110 Aa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEaE~Qa~eV~rRq~k~res~gn~e~  189 (348)
                      |-..||.|..+|=.-|..+.-...+-..+||+.-..+-        -.-|..-|.-+|..-.+.-..++|.+.    +| 
T Consensus        94 aL~~~g~a~~~ia~~~~~~~~~v~~~fl~pL~~~l~~d--------lk~i~k~RKkLe~rRLd~D~~K~r~~k----ae-  160 (220)
T cd07617          94 TLIKVGETQKRLGAAERDFIHTSSINFLTPLRNFLEGD--------WKTISKERRLLQNRRLDLDACKARLKK----AE-  160 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhc----cH-
Confidence            99999999999999999999999999999999766532        124566777777766666555555542    34 


Q ss_pred             hhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHH-HHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 018995          190 ALKLDAAEVKLHDLKSNMAILGKEAAAAMAAV-ESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGE  257 (348)
Q Consensus       190 ~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aV-EaQQQrlTlQRLiaMVeAER~YHqrv~~ILd~L~~e  257 (348)
                       -.|+.|+.|..+-+. .+.      ..|--| +..--  -+.=|.+.|+|...||....+||..|..+
T Consensus       161 -~elr~A~~kf~~~~E-~a~------~~M~~il~~~~e--~l~~L~~lv~AQl~Yh~q~~e~L~~l~~~  219 (220)
T cd07617         161 -HELRVAQTEFDRQAE-VTR------LLLEGISSTHVN--HLRCLHEFVEAQATYYAQCYRHMLDLQKQ  219 (220)
T ss_pred             -HHHHHHHHHHHHHHH-HHH------HHHHHHHhcChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence             378899999887554 322      223322 11001  24568899999999999999999999865

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified

>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1

Probab=96.53  E-value=0.25  Score=47.08  Aligned_cols=194  Identities=14%  Similarity=0.236  Sum_probs=124.2

Q ss_pred             HHHHHHHHhhhhhchhhhhhhhhccceeeeecc---------eeehhhhhhhhhhhhccCCCCCCCchHHHHHHHHhHHH
Q 018995           47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGS---------KQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRA  117 (348)
Q Consensus        47 HQ~LekLY~STRaaKhFQrdIVRgvEGfis~gs---------Kq~Ei~~KLaeDc~KYG~en~~~~~~~LarAa~~yg~a  117 (348)
                      .++|||---+||..=   -+|+|..+.+. -|.         |.+ -..-|++.--+||.+=.  .++.+.+|-..||.+
T Consensus        17 ~~~le~r~D~~k~~~---~~i~k~~~~~l-qpnp~~r~ek~~kk~-p~~~Lgq~M~e~~~~lg--~~s~~g~aL~~~gea   89 (246)
T cd07618          17 LLQIERRLDTVRSVS---HNVHKRLIACF-QGQVGTDAEKRHKKL-PLTALAQNMQEGSAQLG--EESLIGKMLDTCGDA   89 (246)
T ss_pred             HHHHHHHHHHHHHHH---HHHHHHHHHHc-CCChHHHHHHHhccC-CHHHHHHHHHHHHhcCC--CCccHHHHHHHHHHH
Confidence            355666655555432   35555555553 111         111 14456777778888854  355699999999999


Q ss_pred             HHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh--cCCCCC-hhhhhh--
Q 018995          118 RAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKV--RETPGN-PDLALK--  192 (348)
Q Consensus       118 ~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEaE~Qa~eV~rRq~k~--res~gn-~e~~~K--  192 (348)
                      -+.+=.+|-++=-.+-..|.+||+....+- |-++-+....-...|-+.+     ..|+|.+.  +.+++| ..+..|  
T Consensus        90 ~~kla~~~~~~d~~ie~~fl~PL~~~le~d-lk~I~K~RkkLe~~RLD~D-----~~K~r~~~a~~~~~~~~~~~~~K~~  163 (246)
T cd07618          90 ENKLAFELSQHEVLLEKDILDPLNQLAEVE-IPNIQKQRKQLAKLVLDWD-----SARGRYNQAHKSSGTNFQAMPSKID  163 (246)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHhHHhhHH-----HHHHHHHhccccCccccccccchhh
Confidence            999999988888888889999999887743 2234444444444444443     33444331  112222 122345  


Q ss_pred             -----hHHHHHhHHHHHHHHHHhcHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Q 018995          193 -----LDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLSE  261 (348)
Q Consensus       193 -----Lq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeAER~YHqrv~~ILd~L~~eMvsE  261 (348)
                           +..|+.|+.+-|...+.   ++-.-| +=|..+    +.=|+..|+|=..||...++||+++..+|-.=
T Consensus       164 ~l~ee~e~a~~k~E~~kD~~~~---dm~~~l-~~e~e~----~~~l~~lv~aQ~eYHr~a~e~Le~~~p~i~~~  229 (246)
T cd07618         164 MLKEEMDEAGNKVEQCKDQLAA---DMYNFA-SKEGEY----AKFFVLLLEAQADYHRKALAVIEKVLPEIQAH  229 (246)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHH---HHHHHH-HcCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 57888888888877766   444443 223333    34588999999999999999999999888543

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.

>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins

Probab=96.51  E-value=0.28  Score=45.68  Aligned_cols=153  Identities=16%  Similarity=0.277  Sum_probs=104.4

Q ss_pred             hhhhhhhhhhccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHH
Q 018995           85 GTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQ  164 (348)
Q Consensus        85 ~~KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQ  164 (348)
                      ..-|++.--.||.+=+  .++.++.|-..||.|.++|-..++.|..-+.+-+.+||+-.+.     |-+    -|.+-|.
T Consensus        53 ~~~Lg~~M~~~g~~lg--~dS~~G~aL~~~G~a~~kia~~q~~f~~~~~~~~l~pL~~~l~-----~~k----~i~k~RK  121 (215)
T cd07593          53 VEALGLVMINHGEEFP--QDSEYGSCLSKLGRAHCKIGTLQEEFADRLSDTFLANIERSLA-----EMK----EYHSARK  121 (215)
T ss_pred             HHHHHHHHHHHHhhCC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH----HHHHHHH
Confidence            4567777778888854  4557999999999999999999999999999999999986652     322    4666777


Q ss_pred             HHHHHHHHHHHHhhhhcCCC-CChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHH-HhhHHHHHHHHHHHHhHHH
Q 018995          165 EAEAQAIEVSKRQAKVRETP-GNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVES-QQQRLTLQRLIAMVEAERT  242 (348)
Q Consensus       165 EaE~Qa~eV~rRq~k~res~-gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEa-QQQrlTlQRLiaMVeAER~  242 (348)
                      -+|..-.+.--.++|.+.+. ..+..-.-|+.|+.|..+-+.-       |...|-.|-. .-.  -+.=|...|+|.-.
T Consensus       122 kLe~rRLdyD~~ksk~~kak~~~~~~eeElr~Ae~kfees~E~-------a~~~M~~i~~~e~e--~~~~L~~lv~AQl~  192 (215)
T cd07593         122 KLESRRLAYDAALTKSQKAKKEDSRLEEELRRAKAKYEESSED-------VEARMVAIKESEAD--QYRDLTDLLDAELD  192 (215)
T ss_pred             HHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhcChH--HHHHHHHHHHHHHH
Confidence            77776666555554443221 1122233455677777665433       3333433321 011  13457889999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 018995          243 YHQRVLQILDQLEGE  257 (348)
Q Consensus       243 YHqrv~~ILd~L~~e  257 (348)
                      ||+..++||..|..+
T Consensus       193 Yh~q~~e~L~~l~~~  207 (215)
T cd07593         193 YHQQSLDVLREVRQS  207 (215)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999999843

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol

>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2

Probab=96.49  E-value=0.26  Score=45.67  Aligned_cols=182  Identities=13%  Similarity=0.234  Sum_probs=135.6

Q ss_pred             HHHHHHHhhhhhchhhhhhhhhccceeeeecceeehhhhhhhhhhhhccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhH
Q 018995           48 QRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGN  127 (348)
Q Consensus        48 Q~LekLY~STRaaKhFQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~  127 (348)
                      .+|+||+..-+.--+.+++-+.+...|+. |-          .|-++||++.. ..+++|    ..|+.+-..|+..|+.
T Consensus        16 ~~l~Kl~K~~~~~~dag~~~~~a~~~F~~-~l----------~d~~~~~~~De-~i~~~l----~kF~~~l~ei~~~~~~   79 (200)
T cd07638          16 LKLDKLVKLCIGMIDAGKAFCQANKQFMN-GI----------RDLAQYSSKDA-VIETSL----TKFSDTLQEMINYHTI   79 (200)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HH----------HHHHHhCCcch-hhHHHH----HHHHHHHHHHHHHHHH
Confidence            57888888877777777776665555431 11          24456777765 234444    5599999999999999


Q ss_pred             HHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCChhhhhhhHHHHHhHHHHHHHH
Q 018995          128 LLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNM  207 (348)
Q Consensus       128 l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEaE~Qa~eV~rRq~k~res~gn~e~~~KLq~AE~Kl~ELks~M  207 (348)
                      |+.-...-+..||..-+.. .|-+++-...+||+..++-++-..--++=- |.|        ..-++.|+.-|.--++..
T Consensus        80 L~~q~~~~l~~~L~~F~k~-dl~~vke~kk~FdK~s~~~~~aL~K~~~~~-k~k--------~~e~eEa~~~l~~~r~~F  149 (200)
T cd07638          80 LFDQAQRSIKAQLQTFVKE-DLRKFKDAKKQFDKVSEEKENALVKNAQVQ-RNK--------QHEVEEATNILTATRKCF  149 (200)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHhHHHHHHHHHhccCC-cCc--------hHHHHHHHHHHHHHHHHH
Confidence            9999999999999887764 567899999999999987665433222111 111        133477777888888888


Q ss_pred             HHhcHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018995          208 AILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLE  255 (348)
Q Consensus       208 a~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeAER~YHqrv~~ILd~L~  255 (348)
                      .-..-+=..++..|++-.-=-=|+.|++.+.|=.+|...--++|++++
T Consensus       150 ~~~~ldYv~~ln~vq~kKkfe~le~ll~~m~a~~tff~qG~el~~d~~  197 (200)
T cd07638         150 RHIALDYVLQINVLQSKRRSEILKSMLSFMYAHLTFFHQGYDLFSELG  197 (200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence            877788888999998877777779999999999999999999998876

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins

Probab=96.26  E-value=0.64  Score=39.81  Aligned_cols=164  Identities=13%  Similarity=0.190  Sum_probs=112.8

Q ss_pred             hhhhhhhhccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHH
Q 018995           87 KLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA  166 (348)
Q Consensus        87 KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEa  166 (348)
                      .|+.-|..++....... ..|+.+-..+|.+...+=.-.+.+....-..+.+||+-++.-.  .-+|.+-.+.+++.++.
T Consensus        43 elg~~~~~Ls~~e~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~y~~~~--~s~k~~l~~R~~~~~~~  119 (218)
T cd07596          43 EFGKALIKLAKCEEEVG-GELGEALSKLGKAAEELSSLSEAQANQELVKLLEPLKEYLRYC--QAVKETLDDRADALLTL  119 (218)
T ss_pred             HHHHHHHHHHhhccccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence            34444445555433111 2589999999999999988899999999999999999988432  23555556655666666


Q ss_pred             HHHHHHHHHHhh---hhcCCCCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHHHhhHHHHHH-------HHHH
Q 018995          167 EAQAIEVSKRQA---KVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQR-------LIAM  236 (348)
Q Consensus       167 E~Qa~eV~rRq~---k~res~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQR-------LiaM  236 (348)
                      +.--..+.+.+.   |.+.+++  -+..|...++.++.++...+..+-+..-..-..+..+=.|..-.|       |..+
T Consensus       120 ~~~~~~l~~k~~~~~kl~~~~~--~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~~~El~~f~~~~~~dlk~~l~~~  197 (218)
T cd07596         120 QSLKKDLASKKAQLEKLKAAPG--IKPAKVEELEEELEEAESALEEARKRYEEISERLKEELKRFHEERARDLKAALKEF  197 (218)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555443   3443332  223578888888888888887777777666666666666665555       6778


Q ss_pred             HHhHHHHHHHHHHHHHHHH
Q 018995          237 VEAERTYHQRVLQILDQLE  255 (348)
Q Consensus       237 VeAER~YHqrv~~ILd~L~  255 (348)
                      ++....||+.+++++..+.
T Consensus       198 ~~~qi~~~~~~~~~W~~~~  216 (218)
T cd07596         198 ARLQVQYAEKIAEAWESLL  216 (218)
T ss_pred             HHHHHHHHHHHHHHHHhhC
Confidence            8899999999999988763

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A

Probab=96.20  E-value=0.0033  Score=45.21  Aligned_cols=25  Identities=28%  Similarity=0.464  Sum_probs=20.8

Q ss_pred             ecccCCCCCCceeeeeeCCEEEEEe
Q 018995          311 VVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       311 v~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      |+|+|.++.+.||||..||.|.|-.
T Consensus         1 Al~~y~~~~~dELs~~~Gd~i~v~~   25 (49)
T PF14604_consen    1 ALYDYEAQDPDELSFKKGDVITVLE   25 (49)
T ss_dssp             ESSCBCSSSTTB-EB-TTEEEEEEE
T ss_pred             CCccCCCCCcCEeeEcCCCEEEEEE
Confidence            6899999999999999999998754

...

>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3

Probab=96.07  E-value=0.52  Score=44.45  Aligned_cols=148  Identities=18%  Similarity=0.284  Sum_probs=102.8

Q ss_pred             hhhhhhhhhccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHH
Q 018995           86 TKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQE  165 (348)
Q Consensus        86 ~KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQE  165 (348)
                      .-|++.--+||.+=.  .++.+..|-..||.|..++=..+..+.--..+-+.+||+....+-        -.-|..-|.-
T Consensus        67 ~~Lg~~M~~~G~~lg--~dS~~G~aL~~~G~A~~kla~~~~~~~~~v~~~fl~pL~~~l~~d--------ik~i~k~RKk  136 (223)
T cd07615          67 GLLGDCMLRYGRELG--EESTFGNALLDVGESMKQMAEVKDSLDINVKQNFIDPLQLLQDKD--------LKEIGHHLKK  136 (223)
T ss_pred             hHHHHHHHHHHhhCC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Confidence            357777778888854  455699999999999999999999999999999999999654332        1134455555


Q ss_pred             HHHHHHHHHHHhhhhcCCCCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHH---HHHhhHHHHHHHHHHHHhHHH
Q 018995          166 AEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAV---ESQQQRLTLQRLIAMVEAERT  242 (348)
Q Consensus       166 aE~Qa~eV~rRq~k~res~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aV---EaQQQrlTlQRLiaMVeAER~  242 (348)
                      .|..-.+.--.+.|  .+. .  .-.-++.|+.|+.|-+.-       |...|-.+   |.-|    +.=|.+.|+|+=.
T Consensus       137 Le~rRLd~D~~K~r--~~k-~--~~eE~~~A~~kfees~E~-------a~~~M~n~le~e~e~----~~~L~~lv~AQl~  200 (223)
T cd07615         137 LEGRRLDFDYKKKR--QGK-I--PDEEIRQAVEKFEESKEL-------AERSMFNFLENDVEQ----VSQLSVLIEAALD  200 (223)
T ss_pred             HHHHHHHHHHHHHc--CCC-C--cHHHHHHHHHHHHHHHHH-------HHHHHHHHHHcChHH----HHHHHHHHHHHHH
Confidence            55544443333223  222 1  244577888888876643       33344332   1122    3457899999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 018995          243 YHQRVLQILDQLEGEML  259 (348)
Q Consensus       243 YHqrv~~ILd~L~~eMv  259 (348)
                      ||+..++||..|..++.
T Consensus       201 Yh~~a~eiL~~l~~~l~  217 (223)
T cd07615         201 YHRQSTEILEDLQSKLQ  217 (223)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999998876

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e

>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase

Probab=95.96  E-value=0.23  Score=46.40  Aligned_cols=186  Identities=11%  Similarity=0.218  Sum_probs=137.6

Q ss_pred             hhhhhhhhhccceeeeecceeehhhhhhhhhhhhccCC---CCCCCch-HHHHHHHHhHHHHHHHHHHHhHHHHHHhhhh
Q 018995           61 KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSD---NTCTSGN-TLSKAALSYGRARAQMEKERGNLLKALGTQV  136 (348)
Q Consensus        61 KhFQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~e---n~~~~~~-~LarAa~~yg~a~~~mEkEre~l~r~L~~QV  136 (348)
                      .+|=+.|++..=++|..|..=.---.+++..-+-++-+   ++.+.+. .++.+-..|+.+-..||++|+.|+.--...+
T Consensus        15 ~k~ik~liK~~k~~i~A~k~~~~a~~~Fa~sL~~f~~~~~gd~~~dDe~~I~~~L~kF~~~L~ei~~~r~~L~~qa~~~l   94 (207)
T cd07636          15 NKFIKELIKDGKSLIAALKNLSSAKRKFADSLNEFKFQCIGDAETDDEICIARSLQEFAAVLRNLEDERTRMIENASEVL   94 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556677777777766554444445566666666622   1112332 3778888999999999999999999999999


Q ss_pred             hhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHH
Q 018995          137 AEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAA  216 (348)
Q Consensus       137 ~ePLRaMv~GaPLEDARhLaqRYdRmRQEaE~Qa~eV~rRq~k~res~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~a  216 (348)
                      ..||-.-+- -+|-.++--..+|||..+.-++-..-.+-=..|.|      +  ..++.|+.-|.--+++.--..-+=+.
T Consensus        95 ~~~L~~F~k-edi~~~Ke~kK~FdK~se~~~~al~k~~~ls~k~K------~--~~~eEA~~~L~~~r~~F~~~sLdYV~  165 (207)
T cd07636          95 ITPLEKFRK-EQIGAAKEAKKKYDKETEKYCAVLEKHLNLSSKKK------E--SQLHEADSQVDLVRQHFYEVSLEYVF  165 (207)
T ss_pred             HHHHHHHHH-HHHHHHHHHhhhHhhhhhHHHHHHHHHhcCcccCC------c--hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999988765 46678999999999999998875443331111111      1  26899999999999998888888888


Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018995          217 AMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLE  255 (348)
Q Consensus       217 AM~aVEaQQQrlTlQRLiaMVeAER~YHqrv~~ILd~L~  255 (348)
                      .+..|++-.-===++.|++.+.|=.+|...--+++.++.
T Consensus       166 qi~~vq~rKkfefle~llsfm~a~~tffhqG~el~~d~~  204 (207)
T cd07636         166 KVQEVQERKMFEFVEPLLAFLQGLFTFYHHGYELAKDFS  204 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence            888888776666679999999999999988888887764

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o

>smart00326 SH3 Src homology 3 domains

Probab=95.75  E-value=0.0092  Score=40.30  Aligned_cols=30  Identities=23%  Similarity=0.262  Sum_probs=27.2

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      +.+.|+++|++..++||+|.+||.|.|..-
T Consensus         3 ~~~~a~~~~~~~~~~~l~~~~Gd~v~v~~~   32 (58)
T smart00326        3 PQVRALYDYTAQDPDELSFKKGDIITVLEK   32 (58)
T ss_pred             cEEEEeeeeCCCCCCCCCCCCCCEEEEEEc
Confidence            567899999999999999999999988765

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.

>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2

Probab=95.74  E-value=0.42  Score=44.71  Aligned_cols=140  Identities=11%  Similarity=0.219  Sum_probs=109.2

Q ss_pred             HHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q 018995          107 LSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGN  186 (348)
Q Consensus       107 LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEaE~Qa~eV~rRq~k~res~gn  186 (348)
                      ++..-..|+++...++.+|+-|+.-+...+..||-.-+- -+|-.++-...+||+-..+-++-..-.++=.+|.|+.   
T Consensus        65 i~~sl~ef~~~~~el~d~r~~L~~~~~~~l~~pL~~F~k-edl~~~Ke~KK~FdK~se~~~~Al~K~~~ls~kkk~~---  140 (207)
T cd07635          65 IDASLQEFSNFLKNLEEQREIMALNVTETLIKPLERFRK-EQLGAVKEEKKKFDKETEKNYSLLEKHLNLSAKKKEP---  140 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCCCCcc---
Confidence            467778999999999999999999999999999988754 4678899999999999999998776655554444421   


Q ss_pred             hhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018995          187 PDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLE  255 (348)
Q Consensus       187 ~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeAER~YHqrv~~ILd~L~  255 (348)
                           -++.|+.-|.--++..--..-+=+.++..|++-..===|+.|++.+.|=.+|...--++|.++.
T Consensus       141 -----e~~EA~~~l~~~r~~F~~~sLdYv~qin~lQ~rKKfe~le~ll~~m~a~~tffhqG~el~~d~~  204 (207)
T cd07635         141 -----QLQEADVQVEQNRQHFYELSLEYVCKLQEIQERKKFECVEPMLSFFQGVFTFYHQGYELAKDFN  204 (207)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence                 2456777666666666655556667777777666555678899999999999888888887764

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote

>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=95.72  E-value=0.0091  Score=41.94  Aligned_cols=29  Identities=24%  Similarity=0.373  Sum_probs=24.8

Q ss_pred             EecccCCCCCCceeeeeeCCEEEEEeecc
Q 018995          310 EVVHPYQAESDVELTLSVGDYVVVRKVHN  338 (348)
Q Consensus       310 ev~hpF~aesegELsLsvGDyVVVRqVs~  338 (348)
                      .|+++|+++.++|||+..||.|.|-+...
T Consensus         1 ~Alydf~~~~~~eLs~~~Gd~i~v~~~~~   29 (48)
T PF00018_consen    1 RALYDFDAEDPDELSFKKGDIIEVLEKSD   29 (48)
T ss_dssp             EESSCBETSSTTBSEB-TTEEEEEEEESS
T ss_pred             CCCeeeCCCCCCEEeEECCCEEEEEEecC
Confidence            47999999999999999999999977543

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....

>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies

Probab=95.58  E-value=0.011  Score=39.71  Aligned_cols=28  Identities=25%  Similarity=0.317  Sum_probs=25.9

Q ss_pred             EEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          309 GEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       309 aev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      +.++++|.+..++||+|.+||.|.|-+.
T Consensus         2 ~~a~~~~~~~~~~~l~~~~Gd~v~v~~~   29 (54)
T cd00174           2 VRALYDYDARDPDELSFKKGDIIEVLEK   29 (54)
T ss_pred             EEEEEeeCCCCCCCCCCCCCCEEEEEEc
Confidence            5789999999999999999999998876

>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2

Probab=94.95  E-value=3.4  Score=39.05  Aligned_cols=151  Identities=20%  Similarity=0.319  Sum_probs=99.0

Q ss_pred             hhhhhhhhhccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHH
Q 018995           86 TKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQE  165 (348)
Q Consensus        86 ~KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQE  165 (348)
                      .-|++.--+||.+=.  .++.++.|-..||.|...|=..|..+--.+.+-+.+||+.-..+-        -..|..-|.-
T Consensus        67 ~~Lg~~M~~~G~~lg--~dS~~G~aL~~~G~a~~kia~~~~~~d~~i~~~fl~pL~~~le~d--------ik~i~k~RKk  136 (223)
T cd07614          67 GLLGETMIRYGKELG--DESNFGDALLDAGESMKRLAEVKDSLDIEVKQNFIDPLQNLCDKD--------LKEIQHHLKK  136 (223)
T ss_pred             hHHHHHHHHHHhhCC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Confidence            347777788998854  455699999999999999999999999999999999999765321        2245556666


Q ss_pred             HHHHHHHHHHHhhhhcCCCCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHH
Q 018995          166 AEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQ  245 (348)
Q Consensus       166 aE~Qa~eV~rRq~k~res~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeAER~YHq  245 (348)
                      +|..-.+.--.+.|  .+. .++  .-|+.|..|..+-+.       .|...|-.|-.=. -=-+.=|...|+|.=.||+
T Consensus       137 Le~rRLdyD~~K~r--~~k-~~e--eelr~a~ekFees~E-------~a~~~M~~il~~e-~e~~~~L~~lveAQl~Yh~  203 (223)
T cd07614         137 LEGRRLDFDYKKKR--QGK-IPD--EELRQAMEKFEESKE-------VAETSMHNLLETD-IEQVSQLSALVDAQLDYHR  203 (223)
T ss_pred             HHHHHHHHHHHHHc--CCC-Cch--HHHHHHHHHHHHHHH-------HHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHH
Confidence            66554443333222  222 222  234444445444332       2233333221100 0013458899999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 018995          246 RVLQILDQLEGEML  259 (348)
Q Consensus       246 rv~~ILd~L~~eMv  259 (348)
                      ..++||..|..++.
T Consensus       204 qa~eiL~~l~~~l~  217 (223)
T cd07614         204 QAVQILDELAEKLK  217 (223)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998876

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated

>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3

Probab=94.90  E-value=2.6  Score=39.63  Aligned_cols=196  Identities=17%  Similarity=0.250  Sum_probs=126.5

Q ss_pred             CCCcceechHHHhhHHHHHHHHhhhhhchhhhhhhhhccceeeeecceeehhhhhhhhhhhhccCCCCCCCchHHHHHHH
Q 018995           33 GSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAAL  112 (348)
Q Consensus        33 ~~d~~v~DEaElq~HQ~LekLY~STRaaKhFQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~en~~~~~~~LarAa~  112 (348)
                      ..|..+-|+  -++.+.||+      ++|..|||.-+=.+.+-....-+.-|...|++ |  |+.++    +..+-.++-
T Consensus         8 T~D~~fe~~--~~rf~~lE~------~~~kL~Ke~K~Y~dav~~m~~a~~~is~~l~~-~--~~~~~----~~~~~~~~e   72 (225)
T cd07590           8 TVDRELERE--VQKLQQLES------TTKKLYKDMKKYIEAVLALSKAEQRLSQDLAS-G--PLCED----NDELRNLVE   72 (225)
T ss_pred             CCChHHHHH--HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-c--ccCCC----ChHHHHHHH
Confidence            345555222  234555553      35566776555555544445555667777766 3  65543    123667999


Q ss_pred             HhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhh-----hHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCh
Q 018995          113 SYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-----HLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNP  187 (348)
Q Consensus       113 ~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDAR-----hLaqRYdRmRQEaE~Qa~eV~rRq~k~res~gn~  187 (348)
                      .|...-..|+.=-..++..+.+.|.+||.....=-|.-.++     |...=|||+|..++.-       +.|-+    ..
T Consensus        73 ~y~~~~~~l~~~~~~~~~~~~~~vl~Pl~~~~s~f~~I~~~I~KR~~Kl~DYD~~r~~~~kl-------~~K~~----k~  141 (225)
T cd07590          73 ALDSVTTQLDKTVQELVNLIQKTFIEPLKRLRSVFPSVNAAIKRREQSLQEYERLQAKVEKL-------AEKEK----TG  141 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-------HhCcc----CC
Confidence            99999999996668889999999999998887666654443     4556688888777633       23322    12


Q ss_pred             hhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHH---HHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 018995          188 DLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAV---ESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGE  257 (348)
Q Consensus       188 e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aV---EaQQQrlTlQRLiaMVeAER~YHqrv~~ILd~L~~e  257 (348)
                      .+-.||..||..+..-+...-.+..+.-.=|-..   ...-=.-+||-|+.|   +-.||.-.-.++.+|..-
T Consensus       142 ~~~~KL~kae~el~~Ak~~ye~~N~~L~~ELP~l~~~r~~f~~p~Fqsl~~~---Ql~f~~e~~k~~~~l~~~  211 (225)
T cd07590         142 PNLAKLEQAEKALAAARADFEKQNIKLLEELPKFYNGRTDYFQPCFEALIKS---QVLYYSQSTKIFTQLAPN  211 (225)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh
Confidence            2368999999999998888777765544333221   112223355666555   669999999999888753

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins

Probab=94.79  E-value=2.2  Score=39.73  Aligned_cols=174  Identities=22%  Similarity=0.239  Sum_probs=116.0

Q ss_pred             hchhhhhhhhhccceeeeecceeehhhhhhhhhhhhccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhh
Q 018995           59 AGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAE  138 (348)
Q Consensus        59 aaKhFQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~e  138 (348)
                      ++|-+|||+-+=.+.+-..-.-|+.|+.-|++=|   +...   +|      ...+......++.=-.++...|.++|..
T Consensus        27 ~~~kL~k~~K~Y~~av~~m~~~q~~~~e~l~~lY---~p~~---~~------~~~~~~v~e~~d~~~~~l~~~l~~~Vl~   94 (211)
T cd07588          27 SANRLQKDLKNYLNSVRAMKQASKTLSETLKELY---EPDW---PG------REHLASIFEQLDLLWNDLEEKLSDQVLG   94 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCcc---cc------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5678999987777777666677777777775433   3332   22      1233445666666667788889999999


Q ss_pred             HHHHhhcCCCchhhh-----hHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCChhhhhhhHHHHHhHHHHHHHHHHhcHH
Q 018995          139 PLRAMVLGAPLDDAR-----HLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKE  213 (348)
Q Consensus       139 PLRaMv~GaPLEDAR-----hLaqRYdRmRQEaE~Qa~eV~rRq~k~res~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKE  213 (348)
                      ||.....=-|--..|     |=..=|||+|..++.-       +.|    +.  .+..||..||.+|+..+..-..|..+
T Consensus        95 Pl~~~~s~f~~i~k~I~KR~~KllDYDr~r~~~~kL-------~~K----~~--kde~KL~kae~el~~Ak~~Ye~lN~~  161 (211)
T cd07588          95 PLTAYQSQFPEVKKRIAKRGRKLVDYDSARHNLEAL-------KAK----KK--VDDQKLTKAEEELQQAKKVYEELNTE  161 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHHHH-------Hhc----cc--ccHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            999887555543332     2223499999888754       222    21  34789999999999998888777665


Q ss_pred             HHHHHHHHHHHhhHHHH--HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 018995          214 AAAAMAAVESQQQRLTL--QRLIAMVEAERTYHQRVLQILDQLEGEML  259 (348)
Q Consensus       214 A~aAM~aVEaQQQrlTl--QRLiaMVeAER~YHqrv~~ILd~L~~eMv  259 (348)
                      =--=|-..=  +-|+.|  -=+-+++-++-.||.-+..+..+|.+-|.
T Consensus       162 L~~ELP~L~--~~ri~f~~p~F~sl~~~q~~F~~e~~~~~~~l~~~~~  207 (211)
T cd07588         162 LHEELPALY--DSRIAFYVDTLQSIFAAESVFHKEIGKVNTKLNDVMD  207 (211)
T ss_pred             HHHHhHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            444333322  223332  23446677899999999999999988774

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th

>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins

Probab=94.20  E-value=2  Score=40.23  Aligned_cols=146  Identities=12%  Similarity=0.189  Sum_probs=110.2

Q ss_pred             CchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 018995          103 SGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRE  182 (348)
Q Consensus       103 ~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEaE~Qa~eV~rRq~k~re  182 (348)
                      .+..+.-+-..|+.+-..|+..|+.|..-+..-+..||-.-+.+ .|-+++-+..+||+-..+-++-..-.++=..| |.
T Consensus        59 dDe~~~~~l~kFs~~l~El~~~~~~L~~q~~~~l~~pL~~F~k~-Dl~~vKe~kK~FdK~s~~~d~al~K~~~l~k~-k~  136 (215)
T cd07601          59 DDEILVSTLKQFSKVVDELSTMHSTLSSQLADTVLHPISQFMES-DLAEIMTLKELFKAASNDHDGVLSKYSRLSKK-RE  136 (215)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHhHHHHHHHHHHhhCCcC-CC
Confidence            34445557778999999999999999999999999999988876 56889999999999999999855544432111 10


Q ss_pred             CCCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHH
Q 018995          183 TPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILD-QLEG  256 (348)
Q Consensus       183 s~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeAER~YHqrv~~ILd-~L~~  256 (348)
                         ++..   .+.|+.-|.--++...-..-+=..++..|++-..===|+.|++.+.|=.+|.+.--++|. +++.
T Consensus       137 ---~~~~---~~Ea~~~l~~~R~~F~~~~ldYv~~ln~iq~kKk~e~Le~ll~~m~A~~tff~qG~ell~~~~~p  205 (215)
T cd07601         137 ---NTKV---KIEVNDEVYACRKKQHQTAMNYYCALNLLQYKKTTALLEPMIGYLQAQIAFFKMGPEMFTRQTEE  205 (215)
T ss_pred             ---chHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               1111   246666666666666666666677888887766666679999999999999999999987 6653

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17

Probab=93.73  E-value=6.3  Score=37.28  Aligned_cols=88  Identities=17%  Similarity=0.184  Sum_probs=56.5

Q ss_pred             hhhhhhhhhhhhccCCCC----CCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcC------------
Q 018995           83 EIGTKLSEDSRKYGSDNT----CTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLG------------  146 (348)
Q Consensus        83 Ei~~KLaeDc~KYG~en~----~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~G------------  146 (348)
                      |-+.||..-|.||..--.    ..+..++-.|..-+=+.-..+=.+|+.+-.-|.++|++||..++.-            
T Consensus        37 eYakkL~~L~kKy~~kk~~~~~~~~~~t~~~aw~~~l~e~~~~A~~H~~~~~~L~~~v~~~l~~~~~~~k~~rK~~~~~~  116 (253)
T cd07676          37 SYAKQLRNLSKKYQPKKNSKEEEEYKYTSCRAFLMTLNEMNDYAGQHEVISENLASQIIVELTRYVQELKQERKSHFHDG  116 (253)
T ss_pred             HHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            557789999999965421    0112245555555444333444899999999999999999877761            


Q ss_pred             ----CCchhh----hhHHHHHHHHHHHHHHHH
Q 018995          147 ----APLDDA----RHLAQRYDRMRQEAEAQA  170 (348)
Q Consensus       147 ----aPLEDA----RhLaqRYdRmRQEaE~Qa  170 (348)
                          .|++..    .--..+|++.++|+|.-.
T Consensus       117 ~k~qk~~~~~~~~lekaKk~Y~~acke~E~A~  148 (253)
T cd07676         117 RKAQQHIETCWKQLESSKRRFERDCKEADRAQ  148 (253)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                122211    113568888899888653

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1

Probab=93.59  E-value=7.7  Score=37.81  Aligned_cols=158  Identities=15%  Similarity=0.188  Sum_probs=98.8

Q ss_pred             hhhhhhhhccCCCCCCCchHHHHHHHHhHHHH-HHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHH
Q 018995           87 KLSEDSRKYGSDNTCTSGNTLSKAALSYGRAR-AQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQE  165 (348)
Q Consensus        87 KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~-~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQE  165 (348)
                      .|++---+||.+=+  .++.|.+|- ..|-+. ++|=.+..++---+-..|.+||--... --|-+.-|...+-.++|.+
T Consensus        61 ~Ls~~M~es~keLg--~dS~lg~aL-e~~~~~e~~LA~~l~~~E~~Ve~~vl~PL~~L~e-~dL~~I~k~rKkL~k~~LD  136 (257)
T cd07620          61 ALSISMAESFKDFD--AESSIRRVL-EMCCFMQNMLANILADFEMKVEKDVLQPLNKLSE-EDLPEILKNKKQFAKLTTD  136 (257)
T ss_pred             HHHHHHHHHHhhCC--CcchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-hhHHHHHHHHHHHHhHHhh
Confidence            34444467777754  234466666 777776 999999999999999999999988766 2233455555666777777


Q ss_pred             HHHHHHHHHHHhh-h-hcC--CCCCh----------hhhhh-------hHHHHHhHHHHHHHHHHhcHHHHHHHHH---H
Q 018995          166 AEAQAIEVSKRQA-K-VRE--TPGNP----------DLALK-------LDAAEVKLHDLKSNMAILGKEAAAAMAA---V  221 (348)
Q Consensus       166 aE~Qa~eV~rRq~-k-~re--s~gn~----------e~~~K-------Lq~AE~Kl~ELks~Ma~LGKEA~aAM~a---V  221 (348)
                      ...-     |+|. + .+.  .+||.          .+..|       ++.|+.|+.+-|..       +++.|-.   =
T Consensus       137 ~D~~-----K~R~~~a~k~s~~~~~~~~~~~~~~~~~~~~K~~~lkeE~eea~~K~E~~kd~-------~~a~Mynfl~k  204 (257)
T cd07620         137 WNSA-----KSRSPQAAGRSPRSGGRSEEVGEHQGIRRANKGEPLKEEEEECWRKLEQCKDQ-------YSADLYHFATK  204 (257)
T ss_pred             HHHH-----HHHHHHhhccccCCccccccccccccccccccccccHHHHHHHHHHHHHHHHH-------HHHHHHHHHHh
Confidence            6553     2222 1 111  12221          23466       34555555554432       3333322   2


Q ss_pred             HHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 018995          222 ESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQR  264 (348)
Q Consensus       222 EaQQQrlTlQRLiaMVeAER~YHqrv~~ILd~L~~eMvsErq~  264 (348)
                      |..|-    .=|+..||+=..||++.++||+.+..+|-.---.
T Consensus       205 E~e~a----~~l~~lveaQ~~YHrqsl~~Le~~l~~~~~~~~~  243 (257)
T cd07620         205 EDSYA----NYFIRLLELQAEYHKNSLEFLDKNITELKENHSQ  243 (257)
T ss_pred             hHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            22222    2378889999999999999999999998765433

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. SH3-domain binding protein 1 (SH3BP1 or 3BP-1) is a Rac GTPase activating protein that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. SH3BP1 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92)

Probab=93.07  E-value=7.5  Score=36.14  Aligned_cols=158  Identities=17%  Similarity=0.255  Sum_probs=100.3

Q ss_pred             hhhhhhhhhhccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcC-CCchhhhhHH-HHHHHH
Q 018995           85 GTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLG-APLDDARHLA-QRYDRM  162 (348)
Q Consensus        85 ~~KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~G-aPLEDARhLa-qRYdRm  162 (348)
                      +.-||.-|.-||+.-   + ..|++|-..|+..-..|+-=|+.-...+-..|.+||+..++= ...-|++..+ ..|+++
T Consensus        41 ~~~fak~~~~la~~E---~-~~L~~~L~~lae~~~~i~d~~q~qv~~l~~~v~epLk~Y~~l~k~~k~~~K~~~~ar~~~  116 (211)
T cd07598          41 GDELAKSINAYADTE---N-PSLKQGLKNFAECLAALQDYRQAEVERLEAKVVQPLALYGTICKHARDDLKNTFTARNKE  116 (211)
T ss_pred             HHHHHHHHHHHHhcc---C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344677788888753   2 359999999999999999888888888888999999875432 2233333211 122332


Q ss_pred             HHHHHHHHHHHHHHhhhhcCCCCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHHHhhHH-HHHH-HHHHHHhH
Q 018995          163 RQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRL-TLQR-LIAMVEAE  240 (348)
Q Consensus       163 RQEaE~Qa~eV~rRq~k~res~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrl-TlQR-LiaMVeAE  240 (348)
                      .+        -.+.-.|.|..  ||.+-.++..||++|+.-+.-.....+.---=|.--  +++|+ .|+. |...|+.|
T Consensus       117 ~~--------~~~~leklk~~--~~~d~~~i~eaE~~l~~a~~d~~r~s~~l~ee~~rF--e~~k~~d~K~~l~~fv~~~  184 (211)
T cd07598         117 LK--------QLKQLEKLRQK--NPSDRQIISQAESELQKASVDANRSTKELEEQMDNF--EKQKIRDIKTIFSDFVLIE  184 (211)
T ss_pred             HH--------HHHHHHHHHhc--CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence            22        11223344433  334445777899999987774444444333223322  23333 2333 34889999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 018995          241 RTYHQRVLQILDQLEGEM  258 (348)
Q Consensus       241 R~YHqrv~~ILd~L~~eM  258 (348)
                      =.||..+++++..+...+
T Consensus       185 m~~~~kale~~~~~~~~~  202 (211)
T cd07598         185 MLFHAKALEVYTAAYQDI  202 (211)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999887654

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=92.80  E-value=0.093  Score=37.79  Aligned_cols=27  Identities=30%  Similarity=0.373  Sum_probs=22.7

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEE
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVR  334 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVR  334 (348)
                      ++.|+.+|.++...||||..||.|.|-
T Consensus         1 ~~~a~~d~~~~~~~~Ls~~~Gd~i~v~   27 (55)
T PF07653_consen    1 YYRAIFDYVAEDPDELSFKKGDVIEVL   27 (55)
T ss_dssp             EEEESSSBESSSTTB-EB-TTEEEEEE
T ss_pred             CEEEeEEECCCCCCceEEecCCEEEEE
Confidence            467999999999999999999999885

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....

>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking

Probab=92.57  E-value=7.1  Score=34.58  Aligned_cols=149  Identities=15%  Similarity=0.207  Sum_probs=95.8

Q ss_pred             hHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q 018995          105 NTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETP  184 (348)
Q Consensus       105 ~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEaE~Qa~eV~rRq~k~res~  184 (348)
                      ..|+++-..||.+...+-.=.+.+....-....+||+-.+.-..  =+|.+-.+=+++..+-+.-..++.|++.....-.
T Consensus        78 ~~l~~~l~~l~~~~~~~~~~~~~~a~~~~~~l~~~L~ey~~~~~--svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~  155 (236)
T PF09325_consen   78 KSLSEALSQLAEAFEKISELLEEQANQEEETLGEPLREYLRYIE--SVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLK  155 (236)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            45899999999888777666666655555667778876654322  3344434444555667777777777776654433


Q ss_pred             CCh-hhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHHHhhHHHH-------HHHHHHHHhHHHHHHHHHHHHHHHH
Q 018995          185 GNP-DLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTL-------QRLIAMVEAERTYHQRVLQILDQLE  255 (348)
Q Consensus       185 gn~-e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTl-------QRLiaMVeAER~YHqrv~~ILd~L~  255 (348)
                      +++ ...-|+..++..+.+++..+..+-++--..-..+-.-=.|.--       .=|..+++..-.||+.++++...+.
T Consensus       156 ~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l~~~~~~~i~~~~~~~~~We~~~  234 (236)
T PF09325_consen  156 ASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKEKVKDFKSMLEEYAESQIEYQKKMLEAWETFL  234 (236)
T ss_pred             ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHc
Confidence            332 2357888888888888888877766655444444332233322       2356778888888888888877654

This is the C-terminal dimerisation domain [].

>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment

Probab=89.39  E-value=23  Score=34.87  Aligned_cols=139  Identities=21%  Similarity=0.329  Sum_probs=94.7

Q ss_pred             CchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHH--HHHHHHHhhhh
Q 018995          103 SGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQ--AIEVSKRQAKV  180 (348)
Q Consensus       103 ~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEaE~Q--a~eV~rRq~k~  180 (348)
                      ..+.|++|-..|+.+...|..-|-.+-..+-++.-.||+.-+.        .--..=.++|+.++.-  -.|+.|-..|.
T Consensus       146 ~~~~L~~aL~~~S~~~~~I~~aRL~qD~~I~~~Fn~~l~~~Ln--------~~~~~a~k~RkkV~~sRL~~D~~R~~~k~  217 (289)
T PF10455_consen  146 DEDPLSKALLKYSSAYEKIAQARLEQDQLIQKEFNKKLQTTLN--------TDFKKANKARKKVENSRLQFDAARANLKN  217 (289)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3357999999999999999999999999999999999987543        2223344556666554  45667776665


Q ss_pred             cCCCCChh-hhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 018995          181 RETPGNPD-LALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEM  258 (348)
Q Consensus       181 res~gn~e-~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeAER~YHqrv~~ILd~L~~eM  258 (348)
                      +..|-+.+ .-..|+.||-       -++.-=.+|+.-|-.|=.-=-  -+.-|-.+|.|=..||+..+++|..|-.++
T Consensus       218 ~~~pekee~~r~~lE~aED-------eFv~aTeeAv~~Mk~vl~~~e--~l~~Lk~lv~AQl~Yhk~aae~L~~~~~~l  287 (289)
T PF10455_consen  218 KAKPEKEEQLRVELEQAED-------EFVSATEEAVEVMKEVLDNSE--PLRLLKELVKAQLEYHKKAAEALSELLKSL  287 (289)
T ss_pred             cCCcccCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhcCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            32232322 2334455554       333334577777766543222  235677899999999999999999886543

Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO [].

>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1

Probab=86.44  E-value=21  Score=33.93  Aligned_cols=181  Identities=10%  Similarity=0.165  Sum_probs=96.5

Q ss_pred             hhhhhccceeeeecceeehhhhhhhhhhhhccCCCC---CCCch-HHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHH
Q 018995           65 RDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNT---CTSGN-TLSKAALSYGRARAQMEKERGNLLKALGTQVAEPL  140 (348)
Q Consensus        65 rdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~en~---~~~~~-~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePL  140 (348)
                      ++||+-.-|.|.+|..=.-..++++.-.+-++-+-+   .|.+. .++.+--.||..-..||++|..|+.--...|..||
T Consensus        19 kkliK~~~~li~a~K~~s~A~r~Fa~~L~df~f~~igd~~tdde~~I~~sL~~F~~~L~~ie~~r~~l~d~aq~s~~~~L   98 (207)
T cd07633          19 KDVIKDGNALISAIKEYSSAVQKFSQTLQSFQFDFIGDTLTDDEINIAESFKEFAELLQEVEEERMMMVQNASDLLIKPL   98 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555554444444555555555544411   11222 27888889999999999999999999999999999


Q ss_pred             HHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHH
Q 018995          141 RAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAA  220 (348)
Q Consensus       141 RaMv~GaPLEDARhLaqRYdRmRQEaE~Qa~eV~rRq~k~res~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~a  220 (348)
                      ..-+-- -+.-++--...||+.+.+-++--.-=+-=-.|-|        -.-++-|.+-|.--++..--.--+=+--+..
T Consensus        99 ~~F~Ke-di~~~Ke~KK~FdK~se~~~~aL~k~a~~s~k~K--------~~e~eEA~~~L~~~r~~F~~~aLdYV~qI~~  169 (207)
T cd07633          99 ENFRKE-QIGFTKERKKKFEKDSEKFYSLLDRHVNLSSKKK--------ESQLQEADLQVDKERQNFYESSLEYVYQIQE  169 (207)
T ss_pred             HHHHHH-HHHHHHHHhhhhhhhhhHHHHHHHHHhcccccCC--------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            877641 1122455566788887777654321110000101        1124444444444444443333333333333


Q ss_pred             HHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 018995          221 VESQQQRLTLQRLIAMVEAERTYHQRVLQILDQL  254 (348)
Q Consensus       221 VEaQQQrlTlQRLiaMVeAER~YHqrv~~ILd~L  254 (348)
                      |.+..-==-+.=|++.+.|=-+|.+-=-+++.++
T Consensus       170 vQerKKfeive~mLsf~~a~~tf~hqG~el~~df  203 (207)
T cd07633         170 VQESKKFDVVEPVLAFLHSLFTSNNLTVELTQDF  203 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence            3322222223455555666655554444444443

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]

Probab=85.73  E-value=1  Score=49.90  Aligned_cols=26  Identities=23%  Similarity=0.418  Sum_probs=22.8

Q ss_pred             EecccCCCCCCceeeeeeCCEEEEEe
Q 018995          310 EVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       310 ev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      ++..+|.+++-.|||+.+||.|-+-+
T Consensus      1055 ~A~Y~y~gq~~dEls~~~~diIei~~ 1080 (1106)
T KOG0162|consen 1055 EALYDYPGQDVDELSFKKGDIIEIMR 1080 (1106)
T ss_pred             eeeccCCCCCcccccccCCCEEEEec
Confidence            56899999999999999999986543

>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins

Probab=82.42  E-value=37  Score=30.60  Aligned_cols=139  Identities=17%  Similarity=0.124  Sum_probs=86.1

Q ss_pred             HHHHHHHHhhhhhchhhhhhhhhccceeeeecceeehhhhhhhhhhhhccCCCCCC---CchHHHHHHHHhHHHHHHHHH
Q 018995           47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCT---SGNTLSKAALSYGRARAQMEK  123 (348)
Q Consensus        47 HQ~LekLY~STRaaKhFQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~en~~~---~~~~LarAa~~yg~a~~~mEk  123 (348)
                      |-.+.+...|.++--..|.+++...++++....               -+.+.+..   ...++. ....|..+...|..
T Consensus        22 ~k~~k~y~~a~~~l~~~~~~~~~~~~~ly~p~~---------------~~~~~~~~~~~~~~~~~-~~~~y~~~~~~l~~   85 (216)
T cd07599          22 IEQSKAFRDSWRSILTHQIAFAKEFAELYDPIV---------------GPKESVGSHPAPESTLA-RLSRYVKALEELKK   85 (216)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcC---------------CCCcCcCCCCCcHHHHH-HHHHHHHHHHHHHH
Confidence            334445555566666777777777777654211               11121110   122233 34557888888877


Q ss_pred             HHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHH-------HHHHHHHHHHHHHHHHHHhhhhcCCCCChhhhhhhHHH
Q 018995          124 ERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQR-------YDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAA  196 (348)
Q Consensus       124 Ere~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqR-------YdRmRQEaE~Qa~eV~rRq~k~res~gn~e~~~KLq~A  196 (348)
                      +=...+..+.+.|..|+..+..=  +.+.+.+-.+       |||+|...+.      ..+.|.   +.++..-.||..|
T Consensus        86 ~~~~~l~~i~~~V~~P~~~~~~~--~~~i~k~IkKR~~k~lDyd~~~~k~~k------~~~~k~---~~~~kd~~kl~ka  154 (216)
T cd07599          86 ELLEELEFFEERVILPAKELKKY--IKKIRKTIKKRDHKKLDYDKLQNKLNK------LLQKKK---ELSLKDEKQLAKL  154 (216)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHH------HHhcCC---CCChhHHHHHHHH
Confidence            77777889999999999998863  4444444443       6666666654      133331   2245668899999


Q ss_pred             HHhHHHHHHHHHHhcH
Q 018995          197 EVKLHDLKSNMAILGK  212 (348)
Q Consensus       197 E~Kl~ELks~Ma~LGK  212 (348)
                      |.+|.+.+.....|..
T Consensus       155 e~~l~~a~~~y~~lN~  170 (216)
T cd07599         155 ERKLEEAKEEYEALNE  170 (216)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999988877766654

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo

>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family

Probab=82.04  E-value=40  Score=30.74  Aligned_cols=193  Identities=19%  Similarity=0.300  Sum_probs=120.9

Q ss_pred             HHHHHHHhhhhhchhhhhhhhhccceeeeecceeehhhhhhhhhhhhccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhH
Q 018995           48 QRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGN  127 (348)
Q Consensus        48 Q~LekLY~STRaaKhFQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~  127 (348)
                      --||+|..   +|+.||+    ++.+.+.+|.-=.+-.-|+++-|-+  +.   .+. -|.-+-..+...+..+|.+++.
T Consensus        10 P~~e~lv~---~~~kY~~----al~~~~~a~~~f~dal~ki~~~A~~--s~---~s~-~lG~~L~~~s~~~r~i~~~~~~   76 (219)
T PF08397_consen   10 PAWENLVS---LGKKYQK----ALRAMSQAAAAFFDALQKIGDMASN--SR---GSK-ELGDALMQISEVHRRIENELEE   76 (219)
T ss_dssp             HHHHHHHH---HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHT--SS---SHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH---HHHHHHH----HHHHHHHHHHHHHHHHHHHHHhccC--CC---ccc-cHHHHHHHHHHHHHHHHHHHHH
Confidence            34555543   4566654    3456666666667777788776653  11   122 3777778888999999999999


Q ss_pred             HHHHHhhhhhhHHHHhhcCCCc---hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCChhhhhhhHHHHHhHHHHH
Q 018995          128 LLKALGTQVAEPLRAMVLGAPL---DDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLK  204 (348)
Q Consensus       128 l~r~L~~QV~ePLRaMv~GaPL---EDARhLaqRYdRmRQEaE~Qa~eV~rRq~k~res~gn~e~~~KLq~AE~Kl~ELk  204 (348)
                      +.+.|-+.+.-||..=+-.-.=   ..=++...-|.+.+.+.+-...|..|=+.|.+.  |..+.-..+..+-..+.+..
T Consensus        77 ~~~~~~~~li~pLe~~~e~d~k~i~~~~K~y~ke~k~~~~~l~K~~se~~Kl~KK~~k--gk~~~~~~~~~~~~~v~~~~  154 (219)
T PF08397_consen   77 VFKAFHSELIQPLEKKLEEDKKYITQLEKDYEKEYKRKRDELKKAESELKKLRKKSRK--GKDDQKYELKEALQDVTERQ  154 (219)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC--CCccccHHHHHHHHHHHHHH
Confidence            9999999999999865532111   011223455667777777777776665555553  23334444555544555555


Q ss_pred             HHHHHhcHHHHHHHHHHHHHhhHHH--HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 018995          205 SNMAILGKEAAAAMAAVESQQQRLT--LQRLIAMVEAERTYHQRVLQILDQLEGE  257 (348)
Q Consensus       205 s~Ma~LGKEA~aAM~aVEaQQQrlT--lQRLiaMVeAER~YHqrv~~ILd~L~~e  257 (348)
                      +-|...=+++-  =.|+-...-|-.  +.++-..|..|=+||-...++|...=..
T Consensus       155 ~ele~~~~~~~--r~al~EERrRyc~lv~~~~~~~~~~~~~~~~~~~~L~~~~~~  207 (219)
T PF08397_consen  155 SELEEFEKQSL--REALLEERRRYCFLVEKHCSVVKSELAFHNEAVEHLQEKLDD  207 (219)
T ss_dssp             HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            55554333332  333444555555  4888899999999999877777655433

In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.

>KOG4225 consensus Sorbin and SH3 domain-containing protein [Signal transduction mechanisms]

Probab=81.24  E-value=0.88  Score=47.37  Aligned_cols=30  Identities=20%  Similarity=0.345  Sum_probs=26.9

Q ss_pred             eeeEEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       306 yFlaev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      .-.|.+++.|.+++-+||+|..||.|+|++
T Consensus       230 ~~~aralf~F~~qt~kEL~~~kGDIVyI~r  259 (489)
T KOG4225|consen  230 KRAARALFDFEAQTPKELPFNKGDIVYILR  259 (489)
T ss_pred             cchhhheeccccCCccccccCCCCEEEEEe
Confidence            345999999999999999999999998764

>PRK04406 hypothetical protein; Provisional

Probab=80.92  E-value=14  Score=29.60  Aligned_cols=34  Identities=21%  Similarity=0.270  Sum_probs=19.3

Q ss_pred             HHHHhHHHHHHHHHHhcHHHHHHHHHHHHHhhHH
Q 018995          195 AAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRL  228 (348)
Q Consensus       195 ~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrl  228 (348)
                      .-|+++.+|.+-++-+..---.-=-.|-.||+.|
T Consensus         8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I   41 (75)
T PRK04406          8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLI   41 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567777777777766553333233444455554

>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2

Probab=80.84  E-value=54  Score=31.38  Aligned_cols=180  Identities=16%  Similarity=0.287  Sum_probs=118.5

Q ss_pred             eeeecceeehhhhhhhhhhhhccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhh
Q 018995           74 YIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR  153 (348)
Q Consensus        74 fis~gsKq~Ei~~KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDAR  153 (348)
                      +...|.-+++--.-+++--++-|.--.|..+..++++-+.||.....|-+=..+|+--+..=|.-||-..+-| -|-+-+
T Consensus        28 ~~~sG~~yv~~~~~f~~~L~~LG~~~l~~dd~~~~~~l~kf~~~~~El~~l~~~L~~~~~~~I~~pl~s~lK~-dLr~vK  106 (215)
T cd07642          28 IHTSGLAHVENEEQYTQALEKFGSNCVCRDDPDLGSAFLKFSVFTKELTALFKNLVQNMNNIITFPLDSLLKG-DLKGVK  106 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHhH
Confidence            3455666666666666666676764223345568999999999999999988888888888899999998875 233445


Q ss_pred             -hHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCChhhhhhhHHH-HHhHHHHHHHHHHhcHHHHH---HHHHHHHHhhHH
Q 018995          154 -HLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAA-EVKLHDLKSNMAILGKEAAA---AMAAVESQQQRL  228 (348)
Q Consensus       154 -hLaqRYdRmRQEaE~Qa~eV~rRq~k~res~gn~e~~~KLq~A-E~Kl~ELks~Ma~LGKEA~a---AM~aVEaQQQrl  228 (348)
                       .+.+-+|+.|.+-|+-.....+-+.|.    +-+.-+.+.+.. |---++|..+=....-+|+-   =+..+..-|-+=
T Consensus       107 ~d~KK~fdK~~~dyE~~~~k~ek~~r~~----~K~~~~~~~e~~~~E~ae~l~~~R~~fq~~a~dYv~~in~lk~kk~~e  182 (215)
T cd07642         107 GDLKKPFDKAWKDYETKVTKIEKEKKEH----AKMHGMIRTEISGAEIAEEMEKERRFFQLQMCEYLLKVNEIKIKKGVD  182 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhcc----CCccccchhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence             567779999999998765333222111    011112222221 11123444444445555554   445566555555


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 018995          229 TLQRLIAMVEAERTYHQRVLQILDQLEGEM  258 (348)
Q Consensus       229 TlQRLiaMVeAER~YHqrv~~ILd~L~~eM  258 (348)
                      =||.|+....|=-+|++.=+..|+.|+-=|
T Consensus       183 iL~~l~~~~~AQ~tfF~qG~k~le~l~p~~  212 (215)
T cd07642         183 LLQNLIKYFHAQCNFFQDGLKAVETLKPSI  212 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            569999999999999999999999998544

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	348
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-11
1i4d_A	224	Arfaptin 2, partner of RAC1; coiled coil, G-protei	2e-06
1zww_A	256	SH3-containing GRB2-like protein 2; coiled coil, t	6e-06
2z0v_A	240	SH3-containing GRB2-like protein 3; helix bundle,	3e-05
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 65.3 bits (158), Expect = 1e-11
 Identities = 61/375 (16%), Positives = 113/375 (30%), Gaps = 109/375 (29%)

Query: 13  EQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQ-RLERLYISTRAGKHFQRD--IVR 69
           E V    Q +  Q        SD+    +  +H  Q  L RL  S    K ++    ++ 
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS----KPYENCLLVLL 251

Query: 70  GV------EGY------IVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRA 117
            V        +      ++T ++  ++   LS  +  + S +  +   T  +        
Sbjct: 252 NVQNAKAWNAFNLSCKILLT-TRFKQVTDFLSAATTTHISLDHHSMTLTPDEV------- 303

Query: 118 RAQMEKERGNLLKALGTQVAE---------PLRAMVLGAPLDDARHLAQRYDRMRQEAEA 168
                  +  LLK L  +  +         P R  ++   + D       +  +  +   
Sbjct: 304 -------KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356

Query: 169 QAIEVSKRQAKVRETPGNPDLALKLDAAEVK--LHDLKSNMAILGKEA---AAAMA---- 219
             IE S                  L+ AE +     L    ++    A      ++    
Sbjct: 357 TIIESSLNV---------------LEPAEYRKMFDRL----SVFPPSAHIPTILLSLIWF 397

Query: 220 AVESQQQRLTLQRLI--AMVE---AERTY--HQRVLQILDQLEGEMLSERQRIEAAPTAP 272
            V      + + +L   ++VE    E T       L++  +LE E    R  ++      
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK 457

Query: 273 TPSVDTMPPPPA--YEEVNGIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDY 330
           T   D + PP    Y      Y   +H      +G+      H    E    +TL     
Sbjct: 458 TFDSDDLIPPYLDQY-----FY---SH------IGH------HLKNIEHPERMTL----- 492

Query: 331 VVVRKVHNLLELNFV 345
              R V   L+  F+
Sbjct: 493 --FRMV--FLDFRFL 503

>1i4d_A Arfaptin 2, partner of RAC1; coiled coil, G-protein, complex, signaling protein; HET: GDP; 2.50A {Homo sapiens} SCOP: a.238.1.2 PDB: 1i49_A* 1i4l_A* 1i4t_A* Length = 224

 Score = 47.0 bits (111), Expect = 2e-06
 Identities = 23/149 (15%), Positives = 57/149 (38%), Gaps = 6/149 (4%)

Query: 106 TLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQE 165
            L +        +  + K    LL A+   V+  +  +V    ++D     ++Y+  R E
Sbjct: 60  ELQEEFGYNAETQKLLCKNGETLLGAVNFFVSS-INTLVTKT-MEDTLMTVKQYEAARLE 117

Query: 166 AEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQ 225
            +A   ++     ++   P +     +L++A+      +     L  + A  +  +E  +
Sbjct: 118 YDAYRTDLE----ELSLGPRDAGTRGRLESAQATFQAHRDKYEKLRGDVAIKLKFLEENK 173

Query: 226 QRLTLQRLIAMVEAERTYHQRVLQILDQL 254
            ++  ++L+    A   Y     + L+Q 
Sbjct: 174 IKVMHKQLLLFHNAVSAYFAGNQKQLEQT 202

>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A Length = 256

 Score = 45.9 bits (108), Expect = 6e-06
 Identities = 31/185 (16%), Positives = 68/185 (36%), Gaps = 26/185 (14%)

Query: 88  LSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGA 147
           L+E   K+G +           A    G A  ++ + + +L   +     +PL+ +    
Sbjct: 93  LAEAMLKFGRE--LGDDCNFGPALGEVGEAMRELSEVKDSLDMEVKQNFIDPLQNL-HDK 149

Query: 148 PLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNM 207
            L + +H  ++ +  R +   +     K                     + +L       
Sbjct: 150 DLREIQHHLKKLEGRRLDFGYKKKRQGKI-------------------PDEELRQALEKF 190

Query: 208 AILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEA 267
               + A ++M  +        + +L A+V+A+  YH++ +QIL Q+   +    +RI  
Sbjct: 191 DESKEIAESSMFNLLEMDIEQ-VSQLSALVQAQLEYHKQAVQILQQVTVRL---EERIRQ 246

Query: 268 APTAP 272
           A + P
Sbjct: 247 ASSQP 251

>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens} Length = 240

 Score = 44.0 bits (103), Expect = 3e-05
 Identities = 27/174 (15%), Positives = 61/174 (35%), Gaps = 24/174 (13%)

Query: 99  NTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQR 158
                 +T   A +  G +   M + + +L   +     +PL+ +     L +  H  ++
Sbjct: 86  KELGEDSTFGNALIEVGESMKLMAEVKDSLDINVKQTFIDPLQLL-QDKDLKEIGHHLKK 144

Query: 159 YDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAM 218
            +  R + + +   V K                     + ++           + A  +M
Sbjct: 145 LEGRRLDYDYKKKRVGK-------------------IPDEEVRQAVEKFEESKELAERSM 185

Query: 219 AAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEAAPTAP 272
                      + +L   +EA   YH++  +IL +L+ ++   + RI AA + P
Sbjct: 186 FNFLENDVEQ-VSQLAVFIEAALDYHRQSTEILQELQSKL---QMRISAASSVP 235

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B Length = 115

 Score = 40.1 bits (93), Expect = 1e-04
 Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 2/66 (3%)

Query: 275 SVDTMPPPPAYEEVNGIYASQTHNGSTDAMGYFLGEVV--HPYQAESDVELTLSVGDYVV 332
           S   +P       VNG     T  G  D    F+ +V   H Y A    EL L  GD V+
Sbjct: 11  SSGLVPRGSHMATVNGAVEGSTTTGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVL 70

Query: 333 VRKVHN 338
           V    N
Sbjct: 71  VIPFQN 76

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	348
2fic_A	251	Bridging integrator 1; BAR domain, homodimer, coil	98.13
1zww_A	256	SH3-containing GRB2-like protein 2; coiled coil, t	97.99
1uru_A	244	Amphiphysin; endocytosis, coiled-coil, membrane cu	97.94
2q12_A	265	DIP13 alpha, DCC-interacting protein 13 alpha; APP	97.72
2z0v_A	240	SH3-containing GRB2-like protein 3; helix bundle,	97.71
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	97.59
2q13_A	385	DCC-interacting protein 13 alpha; APPL1, BAR domai	97.54
4h8s_A	407	DCC-interacting protein 13-beta; BAR domain, pleck	96.79
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	96.64
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	96.58
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	96.35
2lj0_A	65	Sorbin and SH3 domain-containing protein 1; R85FL,	96.35
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	96.3
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	96.15
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	96.14
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	96.14
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	96.12
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	96.05
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	96.04
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	96.02
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	96.01
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	96.0
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	95.96
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	95.93
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	95.92
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	95.92
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	95.92
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	95.92
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	95.91
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	95.89
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	95.86
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	95.84
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	95.84
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	95.81
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	95.79
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	95.79
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	95.79
2lx7_A	60	GAS-7, growth arrest-specific protein 7; structura	95.79
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	95.79
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	95.78
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	95.78
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	95.78
1i07_A	60	Epidermal growth factor receptor kinase substrate	95.78
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	95.77
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	95.77
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	95.72
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	95.72
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	95.72
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	95.71
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	95.71
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	95.71
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	95.7
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	95.69
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	95.67
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	95.65
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	95.65
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	95.63
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	95.63
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	95.62
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	95.61
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	95.61
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	95.59
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	95.59
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	95.57
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	95.56
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	95.54
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	95.52
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	95.52
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	95.5
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	95.5
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	95.49
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	95.49
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	95.49
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	95.49
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	95.49
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	95.48
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	95.47
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	95.47
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	95.45
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	95.45
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	95.44
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	95.44
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	95.43
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	95.43
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	95.41
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	95.38
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	95.36
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	95.35
1wxb_A	68	Epidermal growth factor receptor pathway substrate	95.35
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	95.34
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens}	95.33
3aco_A	350	Pacsin2, protein kinase C and casein kinase substr	95.33
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	95.29
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	95.27
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	95.27
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	95.24
3i5r_A	83	Phosphatidylinositol 3-kinase regulatory subunit a	95.23
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	95.21
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	95.2
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	95.19
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	95.19
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	95.19
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	95.18
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	95.17
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	95.16
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	95.16
4avm_A	237	Bridging integrator 2; protein binding, plasma mem	95.15
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	95.15
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	95.14
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	95.13
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	95.11
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	95.1
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	95.09
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	95.08
3u23_A	65	CD2-associated protein; structural genomics, struc	95.06
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	95.06
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	95.06
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	95.06
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	95.05
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	95.05
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	95.04
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	95.03
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	95.02
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	95.02
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	95.01
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	95.01
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	94.98
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	94.97
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	94.97
2m0y_A	74	Dedicator of cytokinesis protein 1; apoptosis; NMR	94.97
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	94.96
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	94.95
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	94.94
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	94.94
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	94.93
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	94.93
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	94.91
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	94.9
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	94.9
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	94.9
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	94.86
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	94.83
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	94.81
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	94.8
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	94.78
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	94.74
4glm_A	72	Dynamin-binding protein; SH3 domain, DNMBP, struct	94.73
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	94.68
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	94.62
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	94.59
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	94.52
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	94.49
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	94.48
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	94.47
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	94.38
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	94.36
1i1j_A	108	Melanoma derived growth regulatory protein; SH3 su	94.35
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	94.34
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	94.29
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	94.28
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	94.26
2x3v_A	337	Syndapin I, protein kinase C and casein kinase sub	94.18
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	94.17
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	94.16
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	94.07
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	94.04
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	93.97
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	93.97
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	93.87
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	93.83
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	93.77
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	93.7
3abh_A	312	Pacsin2, protein kinase C and casein kinase substr	93.63
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	93.51
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	93.44
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	93.41
2efl_A	305	Formin-binding protein 1; EFC domain, structural g	93.38
1awj_A	77	ITK; transferase, regulatory intramolecular comple	93.3
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	93.29
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	93.2
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	93.2
2v0o_A	276	FCHO2, FCH domain only protein 2; lipid-binding pr	92.75
3m3w_A	320	Pacsin3, protein kinase C and casein kinase II sub	92.36
2efk_A	301	CDC42-interacting protein 4; EFC domain, structura	90.77
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	90.19
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	89.97
1u3o_A	82	Huntingtin-associated protein-interacting protein;	89.7
3i2w_A	290	Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocyt	89.56
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	89.17
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	88.1
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	86.65
4dyl_A	406	Tyrosine-protein kinase FES/FPS; structural genomi	84.59
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	84.42
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	84.3
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	82.68
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	81.81
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	80.65
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	80.17

>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A

Probab=98.13  E-value=0.00027  Score=61.99  Aligned_cols=219  Identities=14%  Similarity=0.204  Sum_probs=115.4

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCCcceechHHHhhHHHHHHHHhhhhhchhhhhhhhhccceeeeecceeehhhhhhhh
Q 018995           11 LREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSE   90 (348)
Q Consensus        11 lREqVAkQQQAV~Kqfg~~gy~~~d~~v~DEaElq~HQ~LekLY~STRaaKhFQrdIVRgvEGfis~gsKq~Ei~~KLae   90 (348)
                      +..++.|-+|.|...+|++-. ..|..+ |+    .-+++..+...+   +.+|+++-    .|+..-..-+.....|++
T Consensus        28 ~~K~~~Ra~q~~~~k~G~~e~-T~D~~F-e~----~~~~f~~~e~~~---~~l~k~~k----~y~~~~~~~~~~~~~l~~   94 (251)
T 2fic_A           28 VQKKLTRAQEKVLQKLGKADE-TKDEQF-EQ----CVQNFNKQLTEG---TRLQKDLR----TYLASVKAMHEASKKLNE   94 (251)
T ss_dssp             -------------------------CHH-HH----HHHHHHHHHHHH---HHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHcCCccc-cCCHHH-HH----HHHHHHHHHHHH---HHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence            356677778899999983321 223332 22    222232222221   22222221    111111112223445666


Q ss_pred             hhhh-ccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHH
Q 018995           91 DSRK-YGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQ  169 (348)
Q Consensus        91 Dc~K-YG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEaE~Q  169 (348)
                      .... ||....  .++.+....-.|+.       --.++...+.++|.+||...+ + -+.+.+++-...++-|-+-+..
T Consensus        95 ~~~~l~~~~~~--~~~~~~~~~~~~~~-------~~~d~~~~l~~~vi~Pl~~~~-~-~~~~i~~~ikKR~~k~lDyD~~  163 (251)
T 2fic_A           95 CLQEVYEPDWP--GRDEANKIAENNDL-------LWMDYHQKLVDQALLTMDTYL-G-QFPDIKSRIAKRGRKLVDYDSA  163 (251)
T ss_dssp             HHHHHCCTTST--THHHHHHHHHHHHH-------HHHHHHHHHHHHTHHHHHHHH-H-THHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCcC--CchhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH-H-HhHHHHHHHHHHHHHHhhHHHH
Confidence            6665 665532  23334333333332       223455567799999999999 3 4888888888877777777766


Q ss_pred             HHHHHHHhhhhcCCCCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHH
Q 018995          170 AIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQ  249 (348)
Q Consensus       170 a~eV~rRq~k~res~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeAER~YHqrv~~  249 (348)
                      -..+.+-+.|..    .  ...||..||.++.+.+.....|-..--.=|-...+-...+-..=|.++|++...||..+..
T Consensus       164 ~~~l~kl~~k~~----k--d~~kl~kae~el~~ak~~ye~ln~~L~~eLp~l~~~~~~~~~~~l~~f~~~Q~~f~~~~~~  237 (251)
T 2fic_A          164 RHHYESLQTAKK----K--DEAKIAKAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSK  237 (251)
T ss_dssp             HHHHHHHHC-------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCc----C--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            655655444421    1  3578999999999999988887766666666665544444446788999999999999999


Q ss_pred             HHHHHHHHHH
Q 018995          250 ILDQLEGEML  259 (348)
Q Consensus       250 ILd~L~~eMv  259 (348)
                      ++.+|...|.
T Consensus       238 ~~~~L~~~l~  247 (251)
T 2fic_A          238 LNQNLNDVLV  247 (251)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998774

>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A

Probab=97.99  E-value=0.00029  Score=63.06  Aligned_cols=151  Identities=18%  Similarity=0.246  Sum_probs=107.5

Q ss_pred             hhhhhhhhccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHH
Q 018995           87 KLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA  166 (348)
Q Consensus        87 KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEa  166 (348)
                      .|++-+-.+|.+=.  .++.+.+|-..||.+...|...+..+...+.+.|.+||+..+. .-+-++++...+.+..|-+-
T Consensus        92 ~L~~~m~~~~~~l~--~~s~~g~aL~~~g~a~~~la~~~~~~~~~i~~~~l~pl~~~l~-~~~k~i~k~rkkl~~~rLdy  168 (256)
T 1zww_A           92 LLAEAMLKFGRELG--DDCNFGPALGEVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHD-KDLREIQHHLKKLEGRRLDF  168 (256)
T ss_dssp             HHHHHHHHHHHHHC--SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH-THHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            46666666665532  3456889999999999999999999999999999999998764 34667888888888888877


Q ss_pred             HHHHHHHHHHhhhhcCCCCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHH
Q 018995          167 EAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQR  246 (348)
Q Consensus       167 E~Qa~eV~rRq~k~res~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeAER~YHqr  246 (348)
                      ++-     |.  |.+..            +|..|.+.+.-+...-.++...|-.+-+=. -=-+.-|.++|++...||..
T Consensus       169 D~~-----k~--k~~k~------------~eeEle~A~~~fe~~~e~~~~~m~~l~~~e-~e~~~~L~~~v~aQl~y~~~  228 (256)
T 1zww_A          169 GYK-----KK--RQGKI------------PDEELRQALEKFDESKEIAESSMFNLLEMD-IEQVSQLSALVQAQLEYHKQ  228 (256)
T ss_dssp             HHH-----HH--TTTTS------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHH-----HH--Hhccc------------cHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence            763     22  32211            244444444444444456666665554221 11237789999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 018995          247 VLQILDQLEGEMLS  260 (348)
Q Consensus       247 v~~ILd~L~~eMvs  260 (348)
                      ..++|.+|..++-.
T Consensus       229 ~~e~L~~l~~~l~~  242 (256)
T 1zww_A          229 AVQILQQVTVRLEE  242 (256)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999877653

>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1

Probab=97.94  E-value=0.00046  Score=59.48  Aligned_cols=219  Identities=16%  Similarity=0.257  Sum_probs=125.4

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCCCcceechHHHhhHHHHHHHHhhhhhchhhhhhhhh---ccceeeeecceeehhh
Q 018995            9 TKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVR---GVEGYIVTGSKQVEIG   85 (348)
Q Consensus         9 sklREqVAkQQQAV~Kqfg~~gy~~~d~~v~DEaElq~HQ~LekLY~STRaaKhFQrdIVR---gvEGfis~gsKq~Ei~   85 (348)
                      .-+..++.|-.|.|...+|.+     +-. .|+.=-...+++..+...   .+..++++-.   .+.++.       ...
T Consensus        11 ~~~~k~~~R~~q~~~~k~G~~-----e~t-~D~~fe~~~~~f~~~e~~---~~~l~k~~~~y~~~~~~~~-------~~~   74 (244)
T 1uru_A           11 KSVQKHAGRAKEKILQNLGKV-----DRT-ADEIFDDHLNNFNRQQAS---ANRLQKEFNNYIRCVRAAQ-------AAS   74 (244)
T ss_dssp             ---------------CCSSCT-----TCC-HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH-------HHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCC-----ccc-CCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH-------HHH
Confidence            345566777788888888732     222 254321222233222222   2223333221   222221       223


Q ss_pred             hhhhhhhhh-ccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHH
Q 018995           86 TKLSEDSRK-YGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQ  164 (348)
Q Consensus        86 ~KLaeDc~K-YG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQ  164 (348)
                      ..|++.... ||.+.+  ...    +   ++.....++.-..+|...+.+.|.+||...+  .-+.+.+++-...++-|-
T Consensus        75 ~~l~~~~~~l~~~~~~--~~~----~---~~~~~~~~~~~~~~~~~~~~~~vi~Pl~~~~--~~~~~i~~~ikKR~~k~l  143 (244)
T 1uru_A           75 KTLMDSVCEIYEPQWS--GYD----A---LQAQTGASESLWADFAHKLGDQVLIPLNTYT--GQFPEMKKKVEKRNRKLI  143 (244)
T ss_dssp             HHHHHHHHHHSCTTST--THH----H---HHHHHHHHHHHHHHHHHHHHTTTHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCC--Cch----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHh
Confidence            456666665 665532  122    2   2222234666666788888899999999998  467888888777555556


Q ss_pred             HHHHHHHHHHHHhhhhcCCCCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHH
Q 018995          165 EAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYH  244 (348)
Q Consensus       165 EaE~Qa~eV~rRq~k~res~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeAER~YH  244 (348)
                      +-+..-..+.+-+.|...   + ....||..||.++.+.+.....|-..--.=|-...+....+-..=|.++|++.-.||
T Consensus       144 DyD~~~~~l~kl~~k~~k---~-kd~~kl~~ae~el~~ak~~ye~ln~~L~~eLp~l~~~~~~~~~~~l~~fv~~q~~~~  219 (244)
T 1uru_A          144 DYDGQRHSFQNLQANANK---R-KDDVKLTKGREQLEEARRTYEILNTELHDELPALYDSRILFLVTNLQTLFATEQVFH  219 (244)
T ss_dssp             HHHHHHHHHHHHHTTTCB---T-TBCCTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcccc---C-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666655556555444210   1 236789999999999999888887777777777766666665677889999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 018995          245 QRVLQILDQLEGEM  258 (348)
Q Consensus       245 qrv~~ILd~L~~eM  258 (348)
                      ..+..|+..|..-|
T Consensus       220 ~~~~~~~~~l~~~~  233 (244)
T 1uru_A          220 NETAKIYSELEAIV  233 (244)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99988888887544

>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A

Probab=97.72  E-value=0.0027  Score=56.37  Aligned_cols=189  Identities=10%  Similarity=0.096  Sum_probs=146.3

Q ss_pred             hhhhhchhhhhhhhhccceeeeecceeehhhhhhhhhhhhccCCC--CCCCchHHHHHHHHhHHHHHHHHHHHhHHHHHH
Q 018995           55 ISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDN--TCTSGNTLSKAALSYGRARAQMEKERGNLLKAL  132 (348)
Q Consensus        55 ~STRaaKhFQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~en--~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L  132 (348)
                      ..+-.-+.+=+.+++.+..++..|..-....++|++.-..|+...  .++++..+..+-..||.+.+.|+.-|..|+.-+
T Consensus        28 ~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~L~~~~~~~~~~~~~d~~~~~~L~~f~~~l~ei~~~~~~l~~~~  107 (265)
T 2q12_A           28 EDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSSCHAVLSTQL  107 (265)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444556667777777788888877888889999999988742  234455678888899999999999999999999


Q ss_pred             hhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCChhhhhhhHHHHHhHHHHHHHHHHhcH
Q 018995          133 GTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGK  212 (348)
Q Consensus       133 ~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEaE~Qa~eV~rRq~k~res~gn~e~~~KLq~AE~Kl~ELks~Ma~LGK  212 (348)
                      ..-|.+||+..+.+. |..++.+..+||+.+.+-++-..-.+. ..|.+  +  +|  ..|+.|+.+|.+.+.+.--..-
T Consensus       108 ~~~~~~PL~~f~~~d-lk~~ke~kk~fdk~~~~yd~al~k~~~-~~k~k--~--~e--~~l~Ea~~~l~~~Rk~f~~~~l  179 (265)
T 2q12_A          108 ADAMMFPITQFKERD-LKEILTLKEVFQIASNDHDAAINRYSR-LSKKR--E--ND--KVKYEVTEDVYTSRKKQHQTMM  179 (265)
T ss_dssp             HHHTHHHHHHHHHTH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTSC--C--CH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCC--c--ch--hhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999875 577888889999999999966555332 22222  1  22  3478899999999999988889


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018995          213 EAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQIL  251 (348)
Q Consensus       213 EA~aAM~aVEaQQQrlTlQRLiaMVeAER~YHqrv~~IL  251 (348)
                      +-...|..|....----++-|++-+++--+|++.-.+++
T Consensus       180 dyv~~l~~l~~kk~~e~le~l~~~~~a~~~ff~~g~e~~  218 (265)
T 2q12_A          180 HYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENL  218 (265)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999875555667889999999999988887776

>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens}

Probab=97.71  E-value=0.0009  Score=59.51  Aligned_cols=151  Identities=20%  Similarity=0.299  Sum_probs=111.1

Q ss_pred             hhhhhhhhccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHH
Q 018995           87 KLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA  166 (348)
Q Consensus        87 KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEa  166 (348)
                      .|+.-+..+|.+=.  .++.|+.|-..||.+..+|...+..|..-...-|.+||+..+. .-+-++.+...+.++.|.+-
T Consensus        76 ~L~~~m~~~~~~l~--~ds~~g~aL~~~g~a~~~ia~~~~~~~~~v~~~~l~pL~~~l~-~d~k~i~~~rKkle~~rLd~  152 (240)
T 2z0v_A           76 LLGDCMLKYGKELG--EDSTFGNALIEVGESMKLMAEVKDSLDINVKQTFIDPLQLLQD-KDLKEIGHHLKKLEGRRLDY  152 (240)
T ss_dssp             HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH-THHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            38888888887732  4567999999999999999999999999999999999998875 34566777788888888887


Q ss_pred             HHHHHHHHHHhhhhcCCCCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHH
Q 018995          167 EAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQR  246 (348)
Q Consensus       167 E~Qa~eV~rRq~k~res~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeAER~YHqr  246 (348)
                      ++-     |.  |.+-.   +  -.-|+.|+.++.+.+.       .+...|-.|-+=. -=-+.-|.++|+|...||..
T Consensus       153 D~a-----k~--k~~k~---~--eeEl~~A~~~fe~~~e-------~~~~~m~~~~~~~-~e~l~~l~~~v~aQl~y~~~  212 (240)
T 2z0v_A          153 DYK-----KK--RVGKI---P--DEEVRQAVEKFEESKE-------LAERSMFNFLEND-VEQVSQLAVFIEAALDYHRQ  212 (240)
T ss_dssp             HHH-----HT--TTTSS---C--HHHHHHHHHHHHHHHH-------HHHHHHHHHHHST-HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHH-----HH--Hhccc---c--HHHHHHHHHHHHHHHH-------HHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence            753     33  22211   1  2235666666665554       4455666554221 11246789999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 018995          247 VLQILDQLEGEMLS  260 (348)
Q Consensus       247 v~~ILd~L~~eMvs  260 (348)
                      ..++|.+|...+-.
T Consensus       213 ~~e~L~~l~~~l~~  226 (240)
T 2z0v_A          213 STEILQELQSKLQM  226 (240)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999987653

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}

Probab=97.59  E-value=0.0031  Score=61.19  Aligned_cols=170  Identities=15%  Similarity=0.140  Sum_probs=94.2

Q ss_pred             hhhhhhhhhhhhccC--CCCCCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCC-------------
Q 018995           83 EIGTKLSEDSRKYGS--DNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGA-------------  147 (348)
Q Consensus        83 Ei~~KLaeDc~KYG~--en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~Ga-------------  147 (348)
                      |.+.+|..=|+||-.  .+....| +|..|-..+=..-..+=+-+..+-..|.++|.+||+..+.-.             
T Consensus        54 eYAk~L~kLakk~~~~~~~~~e~g-tl~~aw~~~~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~e~~~K~~~~~~kerK  132 (486)
T 3haj_A           54 AYAQQLTEWARRWRQLVEKGPQYG-TVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETK  132 (486)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCCS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCBCSSSSBHHHH
T ss_pred             HHHHHHHHHHHHHHhhccCCCCcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            456777777777621  1111234 688877777777777777788888899999999999875311             


Q ss_pred             -----------Cc----hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCChhhhhhhHHHHHhHHHHHHHHHHhcH
Q 018995          148 -----------PL----DDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGK  212 (348)
Q Consensus       148 -----------PL----EDARhLaqRYdRmRQEaE~Qa~eV~rRq~k~res~gn~e~~~KLq~AE~Kl~ELks~Ma~LGK  212 (348)
                                 +|    .+......+|++.++|++..-....+-  + .+...++....|++   .|+...+..+...-.
T Consensus       133 ~~~~~~~k~qk~l~~~~~~l~KaKk~Y~~~cke~e~a~~~~~~a--~-~d~~~t~k~~eK~~---~k~~k~~~~~~~a~~  206 (486)
T 3haj_A          133 EAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANS--K-ADPSLNPEQLKKLQ---DKIEKCKQDVLKTKE  206 (486)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-HCCCSCSHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--h-ccccCCHHHHHHHH---HHHHHHHHHHHHHHH
Confidence                       00    011223446777777765543222211  1 12233444444443   333333333333322


Q ss_pred             HHH--------------HHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHH
Q 018995          213 EAA--------------AAMAAVESQQQRLTLQRLIAMVEAERTYHQRVL----QILDQLEGEML  259 (348)
Q Consensus       213 EA~--------------aAM~aVEaQQQrlTlQRLiaMVeAER~YHqrv~----~ILd~L~~eMv  259 (348)
                      +=.              ..|..+=.+-|.+--+||..|-+.=..|+..+.    .++++++.+|.
T Consensus       207 ~Y~~~v~~~n~~~~~y~~~~~~~~~~lQ~lEeeRi~~lK~~L~~y~~~l~~~~~~~~~~~~e~l~  271 (486)
T 3haj_A          207 KYEKSLKELDQGTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQKHLDLSNVAGYKAIYHDLE  271 (486)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHH
Confidence            222              234444455666666777777777777776653    24566665544

>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A

Probab=97.54  E-value=0.01  Score=55.16  Aligned_cols=183  Identities=9%  Similarity=0.098  Sum_probs=131.4

Q ss_pred             hhhhhhhhhccceeeeecceeehhhhhhhhhhhhccCCCC--CCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhh
Q 018995           61 KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNT--CTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAE  138 (348)
Q Consensus        61 KhFQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~en~--~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~e  138 (348)
                      +.+=+.|++.+..++..|..-..-..+|++.-..|+.+.+  +.+++.+..+-..||.+.+.|+.-+..|+.-+...|.+
T Consensus        34 ~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~L~~~~~~~~~~~~~d~~v~~~l~~f~~~~~ei~~~~~~l~~~~~~~~~~  113 (385)
T 2q13_A           34 SNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSSCHAVLSTQLADAMMF  113 (385)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455555555555555544556777777788887532  23445577788899999999999999999999999999


Q ss_pred             HHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHH
Q 018995          139 PLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAM  218 (348)
Q Consensus       139 PLRaMv~GaPLEDARhLaqRYdRmRQEaE~Qa~eV~rRq~k~res~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM  218 (348)
                      ||+..+.+. |..++.+..+||+.+.+-++-..-.+. ..|.+    .+  ...++-|+..|.+.+....-..-+=...|
T Consensus       114 PL~~f~~~d-i~~~ke~kk~fek~~~~yd~al~k~~~-~~k~k----~~--e~~~~ea~~~l~~~rk~f~~~~ldy~~~l  185 (385)
T 2q13_A          114 PITQFKERD-LKEILTLKEVFQIASNDHDAAINRYSR-LSKKR----EN--DKVKYEVTEDVYTSRKKQHQTMMHYFCAL  185 (385)
T ss_dssp             HHHHHHHTH-HHHHHHHHHHHHHHHHHHHHHHHHHHT-CCSSS----CC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCC----ch--hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999874 577788888999999999865444322 12222    12  23457788888888888887777778888


Q ss_pred             HHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018995          219 AAVESQQQRLTLQRLIAMVEAERTYHQRVLQIL  251 (348)
Q Consensus       219 ~aVEaQQQrlTlQRLiaMVeAER~YHqrv~~IL  251 (348)
                      ..++...-.--|+-|+..+.+--+|++.-.+++
T Consensus       186 ~~l~~rk~~e~le~l~~~~~a~~~ff~~g~~~~  218 (385)
T 2q13_A          186 NTLQYKKKIALLEPLLGYMQAQISFFKMGSENL  218 (385)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888876666667889999999877766655553

>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}

Probab=96.79  E-value=0.27  Score=46.04  Aligned_cols=180  Identities=11%  Similarity=0.145  Sum_probs=112.1

Q ss_pred             HHHHHHHhhhhhchhhhhhhhhccceeeeecceeehhhhhhhhhhhhccCCCCC--CCchHHHHHHHHhHHHHHHHHHHH
Q 018995           48 QRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTC--TSGNTLSKAALSYGRARAQMEKER  125 (348)
Q Consensus        48 Q~LekLY~STRaaKhFQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~en~~--~~~~~LarAa~~yg~a~~~mEkEr  125 (348)
                      ..|.||+.+++..-+-+++...+.              +.|++....+..++.+  ..+..+.-+-..|+.....++..+
T Consensus        58 ~~l~kl~k~~~~~~~~~~~~~~a~--------------~~f~~~l~~~~~~~~~~~~~d~~~~~~l~~f~~~~~ei~~~~  123 (407)
T 4h8s_A           58 DYTNQLLQAMQRVYGAQNEMCLAT--------------QQLSKQLLAYEKQNFALGKGDEEVISTLHYFSKVVDELNLLH  123 (407)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHTTGGGSCCC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHhhhccccccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            455666655554444444444433              3445555555544321  123345556678999999999999


Q ss_pred             hHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCChhhhhhhHHHHHhHHHHHH
Q 018995          126 GNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKS  205 (348)
Q Consensus       126 e~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEaE~Qa~eV~rRq~k~res~gn~e~~~KLq~AE~Kl~ELks  205 (348)
                      ..|+.-+...|.+||+..+.+. |.+++.+..+||+...+-++-...-+. +.|.++      +..+..-+...|.+.+.
T Consensus       124 ~~L~~~~~~~i~~pL~~f~k~d-i~~~ke~kK~Fek~~~~Yd~~l~Ky~~-~~k~k~------~~~~~~e~~~~l~~~Rk  195 (407)
T 4h8s_A          124 TELAKQLADTMVLPIIQFREKD-LTEVSTLKDLFGLASNEHDLSMAKYSR-LPKKKE------NEKVKTEVGKEVAAARR  195 (407)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHTH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-SCSTTC------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccCC------chHHHHHHHHHHHHHHH
Confidence            9999999999999999999883 667777888888888888776554432 222222      12233344555665555


Q ss_pred             HHHHhcHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHH
Q 018995          206 NMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQ  249 (348)
Q Consensus       206 ~Ma~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeAER~YHqrv~~  249 (348)
                      ..--..-+-..+|..+....-.-=++-|+..+.+--+|++.-.+
T Consensus       196 ~f~~asldyv~~l~~lq~rk~~e~le~l~~~~~a~~~~f~~~~~  239 (407)
T 4h8s_A          196 KQHLSSLQYYCALNALQYRKQMAMMEPMIGFAHGQINFFKKGAE  239 (407)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55544555566777776555555556677777776666554444

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.64  E-value=0.0019  Score=48.11  Aligned_cols=31  Identities=26%  Similarity=0.267  Sum_probs=27.8

Q ss_pred             ceeeEEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       305 ~yFlaev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      ....+.++++|+++.+.||+|..||.|.|-+
T Consensus        16 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~   46 (79)
T 1x6b_A           16 DLPQVEITKAFFAKQADEVTLQQADVVLVLQ   46 (79)
T ss_dssp             SCCEEEESSCCCCCSSSBCCCCTTEEEEEEE
T ss_pred             CCCEEEECeeECCCCcCCcCCCCCCEEEEEE
Confidence            4567899999999999999999999998854

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=96.58  E-value=0.0027  Score=48.13  Aligned_cols=34  Identities=15%  Similarity=0.260  Sum_probs=29.7

Q ss_pred             ccceeeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          303 AMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       303 ~~~yFlaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      ......+.++++|+++.+.||+|..||.|.|-+-
T Consensus        14 ~~~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~   47 (91)
T 1wx6_A           14 SRVLHVVQTLYPFSSVTEEELNFEKGETMEVIEK   47 (91)
T ss_dssp             CCCCEEEEESSCCCCSSSSBCCCCTTCEEEEEEC
T ss_pred             CCccEEEEEeecCCcCCCCcccCCCCCEEEEEEC
Confidence            3456789999999999999999999999988664

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.35  E-value=0.0032  Score=45.93  Aligned_cols=33  Identities=18%  Similarity=0.340  Sum_probs=29.1

Q ss_pred             cceeeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          304 MGYFLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       304 ~~yFlaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      ....++.++++|.++.+.||+|..||.|.|-+-
T Consensus         6 ~~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~   38 (73)
T 2dl7_A            6 SGVCFVKALYDYEGQTDDELSFPEGAIIRILNK   38 (73)
T ss_dssp             CCCEEEEESSCBCCSSTTBCCBCTTCEEEEEEC
T ss_pred             CCCEEEEECccCCcCCCCcCCCCCCCEEEEEEC
Confidence            356788999999999999999999999998653

>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A

Probab=96.35  E-value=0.0024  Score=47.29  Aligned_cols=32  Identities=31%  Similarity=0.357  Sum_probs=27.7

Q ss_pred             ceeeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       305 ~yFlaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      ..|-..|+++|.++.++||||..||.|.|-.-
T Consensus         5 ~~~~~~Alydy~a~~~~ELs~~~Gd~i~v~~~   36 (65)
T 2lj0_A            5 DLFSYQALYSYIPQNDDELELRDGDIVDVMEK   36 (65)
T ss_dssp             SSCEEEESSCBCCSSTTBCCBCTTCEEEEEEE
T ss_pred             cCEEEEEceeECCCCcCCcCCCCCCEEEEeEe
Confidence            34667899999999999999999999987543

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus}

Probab=96.30  E-value=0.003  Score=48.33  Aligned_cols=34  Identities=18%  Similarity=0.198  Sum_probs=29.5

Q ss_pred             ccceeeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          303 AMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       303 ~~~yFlaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      ....+.+.++++|.++.+.||+|..||.|.|-.-
T Consensus        14 ~~~~~~~~alydy~a~~~~eLsf~~Gd~i~v~~~   47 (93)
T 1wxu_A           14 EDDHVVARAEYDFVAVSDEEISFRAGDMLNLALK   47 (93)
T ss_dssp             SSCBBCEEESSCBCCSSSSBCCBCSSCBCEECCT
T ss_pred             CCCCEEEEECccCCCCCCCccCcCCCCEEEEEEC
Confidence            3456789999999999999999999999988553

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens}

Probab=96.15  E-value=0.0046  Score=44.64  Aligned_cols=31  Identities=23%  Similarity=0.223  Sum_probs=27.3

Q ss_pred             eeeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       306 yFlaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      -..+.++|+|+++.+.||+|..||.|.|-+-
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~   37 (68)
T 1wxt_A            7 GLKMQVLYEFEARNPRELTVVQGEKLEVLDH   37 (68)
T ss_dssp             CEEEEESSCBCCCSSSBCCBCTTCEEEEEEC
T ss_pred             CeEEEECceECCCCcCcCCCCCCCEEEEEEc
Confidence            3568999999999999999999999988653

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.14  E-value=0.0051  Score=45.59  Aligned_cols=30  Identities=13%  Similarity=0.242  Sum_probs=27.0

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      ..+.++++|.++.+.||+|..||.|.|-+-
T Consensus        18 ~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~   47 (80)
T 2d8h_A           18 IEVTALYSFEGQQPGDLNFQAGDRITVISK   47 (80)
T ss_dssp             EEEECSSCEECSSTTBCEECTTCEEEEEEC
T ss_pred             EEEEECccCCcCCCCeeeEcCCCEEEEeEC
Confidence            568999999999999999999999988654

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens}

Probab=96.14  E-value=0.016  Score=47.04  Aligned_cols=30  Identities=23%  Similarity=0.398  Sum_probs=27.0

Q ss_pred             eeeEEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       306 yFlaev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      --.+.++|+|+++.++||+|.+||.|.|-+
T Consensus        59 ~~~~~Alydy~a~~~~eLsf~~Gd~i~vl~   88 (119)
T 2rqr_A           59 ERHGVAIYNFQGSGAPQLSLQIGDVVRIQE   88 (119)
T ss_dssp             CEEEEBCSCBCCCSTTBCCBCTTCEEEEEE
T ss_pred             ceEEEEccccCCCCCCcccCcCCCEEEEEE
Confidence            356899999999999999999999998855

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A

Probab=96.12  E-value=0.0094  Score=44.46  Aligned_cols=29  Identities=24%  Similarity=0.355  Sum_probs=26.4

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      ..+.++++|.++.++||+|..||.|.|-+
T Consensus        26 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~   54 (86)
T 2oi3_A           26 IIVVALYDYEAIHHEDLSFQKGDQMVVLE   54 (86)
T ss_dssp             EEEEESSCCCCSSSSCCCCCTTCEEEEEE
T ss_pred             cEEEECccCCCCCCCcCcCCCCCEEEEEE
Confidence            56899999999999999999999998854

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.05  E-value=0.005  Score=46.39  Aligned_cols=32  Identities=16%  Similarity=0.159  Sum_probs=28.5

Q ss_pred             cceeeEEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          304 MGYFLGEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       304 ~~yFlaev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      ....++.++++|.++.+.||+|..||.|.|-.
T Consensus         6 ~~~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~   37 (85)
T 2dlp_A            6 SGSGYVIALRSYITDNCSLLSFHRGDLIKLLP   37 (85)
T ss_dssp             SCCCEEEESSCBCCSSSSBCCBCTTCEEEECC
T ss_pred             cCCEEEEECCCCCccCcCCccCcCCCEEEEEE
Confidence            35567899999999999999999999998865

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens}

Probab=96.04  E-value=0.0042  Score=44.73  Aligned_cols=30  Identities=30%  Similarity=0.321  Sum_probs=26.9

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      +.+.++++|.++.+.||+|..||.|.|-.-
T Consensus         4 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~   33 (69)
T 1wyx_A            4 VLAKALYDNVAESPDELSFRKGDIMTVLEQ   33 (69)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEET
T ss_pred             EEEEECccCCcCCCCccCCcCCCEEEEeEC
Confidence            568999999999999999999999988553

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A

Probab=96.02  E-value=0.0044  Score=44.67  Aligned_cols=29  Identities=17%  Similarity=0.373  Sum_probs=26.8

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      +.+.++++|+++.+.||+|..||.|.|-.
T Consensus         8 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~   36 (68)
T 1tg0_A            8 FKVVAQFPYKSDYEDDLNFEKDQEIIVTS   36 (68)
T ss_dssp             EEEEESSCBCCSCTTBCCBCTTCEEEEEE
T ss_pred             EEEEECeeECcCCcCCCCCCCCCEEEEEE
Confidence            67899999999999999999999998865

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=96.01  E-value=0.0087  Score=44.56  Aligned_cols=31  Identities=26%  Similarity=0.309  Sum_probs=27.9

Q ss_pred             eeeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       306 yFlaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      -..+.++++|+++.+.||+|..||.|.|-.-
T Consensus        17 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   47 (81)
T 1x43_A           17 NRKARVLYDYDAANSTELSLLADEVITVFSV   47 (81)
T ss_dssp             CEEEEESSCCCCSSTTBCCCCTTCEEEEECC
T ss_pred             CeEEEEcccCCCCCCCcCCCCCCCEEEEEEc
Confidence            3678999999999999999999999988665

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A

Probab=96.00  E-value=0.0043  Score=43.18  Aligned_cols=29  Identities=21%  Similarity=0.269  Sum_probs=26.0

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      .+.++++|.++.++|||+..||.|.|-+-
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   31 (58)
T 1uti_A            3 WARALYDFEALEEDELGFRSGEVVEVLDS   31 (58)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEC
T ss_pred             EEEECccCCCCCcCCCCCCCCCEEEEEEE
Confidence            47899999999999999999999988653

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*

Probab=95.96  E-value=0.004  Score=43.99  Aligned_cols=27  Identities=22%  Similarity=0.337  Sum_probs=24.7

Q ss_pred             EEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          309 GEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       309 aev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      +.++++|.++.+.||+|.+||.|.|-+
T Consensus         6 ~~al~~y~~~~~~eLs~~~Gd~i~v~~   32 (62)
T 2fpe_A            6 HRAIFRFVPRHEDELELEVDDPLLVEL   32 (62)
T ss_dssp             EEECSCBCCSSTTBCCBCTTCEEEEEE
T ss_pred             EEECccCCccCcCcCcCCCCCEEEEEE
Confidence            578999999999999999999998843

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.93  E-value=0.0092  Score=45.35  Aligned_cols=32  Identities=16%  Similarity=0.337  Sum_probs=28.4

Q ss_pred             cceeeEEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          304 MGYFLGEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       304 ~~yFlaev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      ..+..+.++++|.++.+.||+|..||.|.|-+
T Consensus        15 ~~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~   46 (90)
T 2yup_A           15 LEYGEAVAQYTFKGDLEVELSFRKGEHICLIR   46 (90)
T ss_dssp             GGSEEEEECSCCCCCSSSBCCCCTTCEEEESS
T ss_pred             ccceEEEEeecCCcCCcCcCCCCCCCEEEEEE
Confidence            35678899999999999999999999998854

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A

Probab=95.92  E-value=0.0049  Score=42.73  Aligned_cols=29  Identities=14%  Similarity=0.310  Sum_probs=26.0

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      .+.++++|.++.++||||..||.|.|-+-
T Consensus         4 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   32 (58)
T 1sem_A            4 FVQALFDFNPQESGELAFKRGDVITLINK   32 (58)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEEC
T ss_pred             EEEECcCCCCCCCCCcCCCCCCEEEEEEe
Confidence            46899999999999999999999988654

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A

Probab=95.92  E-value=0.0049  Score=43.01  Aligned_cols=29  Identities=24%  Similarity=0.318  Sum_probs=25.9

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      .+.++++|+++.+.||||..||.|.|-+-
T Consensus         4 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   32 (58)
T 1zx6_A            4 YVEALYQFDPQQDGDLGLKPGDKVQLLEK   32 (58)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEEE
T ss_pred             EEEECceECCCCCCCccCCCCCEEEEEEe
Confidence            46899999999999999999999988653

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.92  E-value=0.0078  Score=43.90  Aligned_cols=32  Identities=13%  Similarity=0.138  Sum_probs=27.9

Q ss_pred             ceeeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       305 ~yFlaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      .-..+.++++|.++.+.||+|..||.|.|-+-
T Consensus         8 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   39 (72)
T 2dl8_A            8 EPIEAIAKFDYVGRTARELSFKKGASLLLYQR   39 (72)
T ss_dssp             SCEEEEESSCBCCSSSSBCCBCTTCEEEEEEE
T ss_pred             CCEEEEECccCCcCCCCEeccCCCCEEEEEee
Confidence            34678999999999999999999999988553

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens}

Probab=95.92  E-value=0.014  Score=44.29  Aligned_cols=30  Identities=17%  Similarity=0.175  Sum_probs=26.9

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      .++.++++|.++.++||+|..||.|.|-+-
T Consensus        32 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~   61 (86)
T 2jxb_A           32 VIVIAKWDYTAQQDQELDIKKNERLWLLDD   61 (86)
T ss_dssp             EEEEESSCCCCCSSSBCCCCTTEEEEEEEC
T ss_pred             eEEEECccCCCCCCCEeccCCCCEEEEEec
Confidence            467899999999999999999999988653

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}

Probab=95.91  E-value=0.0043  Score=42.69  Aligned_cols=28  Identities=29%  Similarity=0.485  Sum_probs=24.8

Q ss_pred             EEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          309 GEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       309 aev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      +.++++|.++.+.||||..||.|.|-+-
T Consensus         3 ~~al~dy~~~~~~eLs~~~Gd~i~v~~~   30 (54)
T 2a28_A            3 MEAIYAYEAQGDDEISIDPGDIITVIRG   30 (54)
T ss_dssp             EEBCSCBCCCSTTBCCBCTTCEEEEEEC
T ss_pred             EEECccCCcCCCCCccCCCCCEEEEEEe
Confidence            5789999999999999999999976543

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A

Probab=95.89  E-value=0.0052  Score=42.77  Aligned_cols=28  Identities=39%  Similarity=0.428  Sum_probs=25.4

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      .+.++++|.++.+.||||..||.|.|-+
T Consensus         4 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~   31 (60)
T 2v1q_A            4 RGIVQYDFMAESQDELTIKSGDKVYILD   31 (60)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEE
T ss_pred             EEEEeeeECCCCCCCccCCCCCEEEEEe
Confidence            5789999999999999999999998854

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.86  E-value=0.0066  Score=43.67  Aligned_cols=31  Identities=19%  Similarity=0.240  Sum_probs=27.7

Q ss_pred             eeeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       306 yFlaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      -..+.++++|.++.+.||+|..||.|.|-+-
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   37 (71)
T 2cre_A            7 GLLARALYDNCPDCSDELAFSRGDILTILEQ   37 (71)
T ss_dssp             CEEEEESSCCCCSSSSBCCCCSSCCEEEEES
T ss_pred             cEEEEECcccCcCCCCCCCCCCCCEEEEeEc
Confidence            3568999999999999999999999988664

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}

Probab=95.84  E-value=0.005  Score=42.95  Aligned_cols=29  Identities=38%  Similarity=0.444  Sum_probs=25.9

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      -+.++++|.++.++||||..||.|.|-+-
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   31 (58)
T 2bz8_A            3 EAIVEFDYQAQHDDELTISVGEIITNIRK   31 (58)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEEC
T ss_pred             EEEECcccCCCCcCEeeECCCCEEEEEEe
Confidence            47899999999999999999999987653

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=95.84  E-value=0.0035  Score=43.51  Aligned_cols=29  Identities=24%  Similarity=0.367  Sum_probs=25.9

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      -+.++++|+++.+.||+|..||.|.|-+-
T Consensus         3 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~   31 (58)
T 1zuu_A            3 ENKVLYAYVQKDDDEITITPGDKISLVAR   31 (58)
T ss_dssp             CCEECSCBCCCSTTBCCBCTTCCEEEEEC
T ss_pred             EEEEeeeECCcCCCcccCCCCCEEEEeEc
Confidence            37899999999999999999999988654

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A

Probab=95.81  E-value=0.0058  Score=42.37  Aligned_cols=30  Identities=20%  Similarity=0.342  Sum_probs=26.6

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      ..+.++++|.++.+.||||..||.|.|-+-
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   32 (58)
T 2vwf_A            3 TYVQALFDFDPQEDGELGFRRGDFIHVMDN   32 (58)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEEC
T ss_pred             eEEEECceECCCCcCCcCCCCCCEEEEEEc
Confidence            357899999999999999999999988653

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens}

Probab=95.79  E-value=0.006  Score=46.55  Aligned_cols=31  Identities=16%  Similarity=0.326  Sum_probs=27.7

Q ss_pred             ceeeEEecccC-CCCCCceeeeeeCCEEEEEe
Q 018995          305 GYFLGEVVHPY-QAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       305 ~yFlaev~hpF-~aesegELsLsvGDyVVVRq  335 (348)
                      ..+.+.++++| .++.+.||+|..||.|.|-+
T Consensus        17 ~~~~~~Alydy~~a~~~~eLsf~~GDiI~V~~   48 (83)
T 2ke9_A           17 GSLKVRALKDFWNLHDPTALNVRAGDVITVLE   48 (83)
T ss_dssp             CCEEEEESSCBCCCSCTTBCCBCTTCEEEESC
T ss_pred             CCeEEEEccccCCCCCCCcccccCCCEEEEEE
Confidence            56789999999 89999999999999998743

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A

Probab=95.79  E-value=0.0082  Score=42.96  Aligned_cols=30  Identities=27%  Similarity=0.286  Sum_probs=27.0

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      ..+.++++|.++.+.||+|..||.|.|-+-
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   37 (68)
T 2dl3_A            8 RPARAKFDFKAQTLKELPLQKGDIVYIYKQ   37 (68)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEEC
T ss_pred             cEEEECccCCCCCcCCccCCCCCEEEEeEe
Confidence            568999999999999999999999998653

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}

Probab=95.79  E-value=0.006  Score=42.54  Aligned_cols=30  Identities=13%  Similarity=0.252  Sum_probs=26.5

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      -.+.++++|.++.+.||||..||.|.|-+-
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   33 (58)
T 1zlm_A            4 KVFRALYTFEPRTPDELYFEEGDIIYITDM   33 (58)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEEC
T ss_pred             EEEEECccCCCCCCCCccCCCCCEEEEEEe
Confidence            357899999999999999999999988653

>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}

Probab=95.79  E-value=0.004  Score=45.70  Aligned_cols=27  Identities=15%  Similarity=0.422  Sum_probs=24.2

Q ss_pred             EEecccCCCCCCce-eeeeeCCEEEEEe
Q 018995          309 GEVVHPYQAESDVE-LTLSVGDYVVVRK  335 (348)
Q Consensus       309 aev~hpF~aesegE-LsLsvGDyVVVRq  335 (348)
                      +.++|+|+++.++| |||..||.|.|-.
T Consensus         6 ~rAlydy~~~~~~e~Ls~~~Gd~i~v~~   33 (60)
T 2lx7_A            6 CRTLYPFSGERHGQGLRFAAGELITLLQ   33 (60)
T ss_dssp             EEESCCCCSCCCSSCCCCCTTCEEEBSC
T ss_pred             EEECcccCCCCCCCCccCCCCCEEEEeE
Confidence            68999999999998 9999999998743

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A

Probab=95.79  E-value=0.0058  Score=43.00  Aligned_cols=30  Identities=20%  Similarity=0.412  Sum_probs=26.7

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      +.+.++++|.++.+.||||..||.|.|-+-
T Consensus         5 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   34 (60)
T 1w70_A            5 MRAEALFDFTGNSKLELNFKAGDVIFLLSR   34 (60)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEE
T ss_pred             cEEEECccCCcCCCCCccCCCCCEEEEEEe
Confidence            358899999999999999999999988654

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A

Probab=95.78  E-value=0.0061  Score=42.24  Aligned_cols=29  Identities=14%  Similarity=0.356  Sum_probs=25.8

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      .+.++++|.++.++|||+..||.|.|-+-
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   31 (57)
T 1cka_A            3 YVRALFDFNGNDEEDLPFKKGDILRIRDK   31 (57)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEEC
T ss_pred             EEEECCcCCCCCCCCCCCCCCCEEEEEEe
Confidence            46899999999999999999999988654

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A

Probab=95.78  E-value=0.0096  Score=43.82  Aligned_cols=31  Identities=26%  Similarity=0.275  Sum_probs=27.7

Q ss_pred             ceeeEEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       305 ~yFlaev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      ....+.++++|+++.+.||+|..||.|.|-+
T Consensus         9 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~   39 (76)
T 2ed1_A            9 KVRRVKTIYDCQADNDDELTFIEGEVIIVTG   39 (76)
T ss_dssp             CCEEEEESSCCCCSSSSBCCCCSSCEEEESS
T ss_pred             CCeEEEECccCCCCCcCCcCcCCCCEEEEEE
Confidence            3467899999999999999999999998854

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.78  E-value=0.0077  Score=44.47  Aligned_cols=32  Identities=19%  Similarity=0.320  Sum_probs=28.3

Q ss_pred             ceeeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       305 ~yFlaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      ..+.+.++++|.++.+.||+|..||.|.|-+-
T Consensus         9 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   40 (76)
T 2epd_A            9 GVVEAVACFAYTGRTAQELSFRRGDVLRLHER   40 (76)
T ss_dssp             CCEEEEESSCEECSSTTBCEECTTCEEEEEEE
T ss_pred             CCEEEEECcCCCCCCCCccCCCCCCEEEEEEe
Confidence            45678999999999999999999999988654

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A

Probab=95.78  E-value=0.0061  Score=42.78  Aligned_cols=28  Identities=14%  Similarity=0.189  Sum_probs=25.3

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      ++.++++|.++.+.||+|..||.|.|-.
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~   30 (60)
T 1i07_A            3 YAKSKYDFVARNSSELSVMKDDVLEILD   30 (60)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEECG
T ss_pred             EEEECccCCCCCCCcccCCCCCEEEEEE
Confidence            4689999999999999999999998854

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus}

Probab=95.77  E-value=0.0052  Score=44.59  Aligned_cols=28  Identities=21%  Similarity=0.310  Sum_probs=25.2

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      .+.++++|.++.+.||+|.+||.|.|-+
T Consensus         8 ~~~al~~y~~~~~~eLs~~~Gd~i~v~~   35 (71)
T 2fpf_A            8 THRAIFRFVPRHEDELELEVDDPLLVEL   35 (71)
T ss_dssp             CEEECSCBCCSSTTBCCBCTTCEEEEEE
T ss_pred             EEEECeeECccCCCcccCcCCcEEEEeE
Confidence            3679999999999999999999999843

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A

Probab=95.77  E-value=0.0056  Score=42.69  Aligned_cols=27  Identities=26%  Similarity=0.304  Sum_probs=24.6

Q ss_pred             EEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          309 GEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       309 aev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      +.++++|.++.++|||+..||.|.|-+
T Consensus         3 ~~al~dy~~~~~~eLs~~~Gd~i~v~~   29 (58)
T 1jo8_A            3 ATAEYDYDAAEDNELTFVENDKIINIE   29 (58)
T ss_dssp             EEESSCBCCCSTTBCCBCTTCEEEEEE
T ss_pred             EEECceECCCCCCCcccCCCCEEEEEE
Confidence            578999999999999999999998755

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A

Probab=95.72  E-value=0.0066  Score=42.08  Aligned_cols=29  Identities=28%  Similarity=0.421  Sum_probs=26.2

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      .+.++++|+++.+.||||..||.|.|-+-
T Consensus         5 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   33 (58)
T 2drm_A            5 QVKALYDYDAQTGDELTFKEGDTIIVHQK   33 (58)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEC
T ss_pred             EEEECccCCCCCcCCcCCCCCCEEEEEEe
Confidence            47899999999999999999999988654

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.72  E-value=0.011  Score=43.73  Aligned_cols=30  Identities=20%  Similarity=0.295  Sum_probs=26.5

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      +.+.++++|.++.+.||+|..||.|.|-.-
T Consensus        18 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   47 (79)
T 1x69_A           18 ITAVALYDYQAAGDDEISFDPDDIITNIEM   47 (79)
T ss_dssp             CCEEESSCCCCSSSSBCCCCTTCEEEEEEE
T ss_pred             eEEEECccCCCCCCCCcCcCCCCEEEEeEe
Confidence            458999999999999999999999987543

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A

Probab=95.72  E-value=0.0061  Score=41.99  Aligned_cols=29  Identities=34%  Similarity=0.394  Sum_probs=25.7

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      -+.++++|.++.+.||+|..||.|.|-+-
T Consensus         3 ~a~al~dy~~~~~~eLs~~~Gd~i~v~~~   31 (58)
T 4e6r_A            3 PAFVXFAYVAEREDELSLVXGSRVTVMEX   31 (58)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEEE
T ss_pred             EEEECccCCCCCCCEeeEeCCCEEEEeEc
Confidence            47899999999999999999999987554

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A

Probab=95.71  E-value=0.0067  Score=42.71  Aligned_cols=29  Identities=28%  Similarity=0.335  Sum_probs=25.7

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      .+.++++|.++.+.||+|..||.|.|-.-
T Consensus         3 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~   31 (65)
T 2oaw_A            3 LVLALYDYQEKSPREVTMKKGDILTLLNS   31 (65)
T ss_dssp             EEEECSCBCCSSTTBCCBCTTCEEEEEEC
T ss_pred             EEEEcccCCccCCCCCCCCCCCEEEEEEc
Confidence            46899999999999999999999988553

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1

Probab=95.71  E-value=0.006  Score=46.76  Aligned_cols=35  Identities=29%  Similarity=0.322  Sum_probs=28.2

Q ss_pred             CccceeeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          302 DAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       302 ~~~~yFlaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      .....+.+.++++|.++.++||||..||.|.|-.-
T Consensus        13 ~~~~~~~~~Alydy~a~~~~eLsf~~Gd~i~Vl~~   47 (83)
T 1neg_A           13 DETGKELVLALYDYQEKSPREVTMKKGDILTLLNS   47 (83)
T ss_dssp             ----CCEEEESSCBCCSSTTBCCBCTTCEEEEEEC
T ss_pred             CCCCceEEEEccccCCCCCCccccCCCCEEEEEEe
Confidence            33466788999999999999999999999988653

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=95.71  E-value=0.0065  Score=42.88  Aligned_cols=29  Identities=24%  Similarity=0.373  Sum_probs=26.2

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      .+.++++|.++.+.||+|..||.|.|-.-
T Consensus         7 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   35 (62)
T 1k4u_S            7 QVEALFSYEATQPEDLEFQEGDIILVLSK   35 (62)
T ss_dssp             EEECCSCBCCCSSSBCCBCSSCEEEEEEE
T ss_pred             EEEECCCCCcCCCCCccCCCCCEEEEEEe
Confidence            47899999999999999999999988654

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A

Probab=95.70  E-value=0.0068  Score=42.91  Aligned_cols=30  Identities=20%  Similarity=0.337  Sum_probs=26.8

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      -.+.++++|+++.+.||+|..||.|.|-+-
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   36 (64)
T 2jte_A            7 EYCRTLFPYTGTNEDELTFREGEIIHLISK   36 (64)
T ss_dssp             EEEEESSCBCCSSSSBCCBCTTCEEEEEES
T ss_pred             EEEEECccCCccCCCccCCCCCCEEEEEEC
Confidence            357899999999999999999999998654

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=95.69  E-value=0.014  Score=43.55  Aligned_cols=32  Identities=22%  Similarity=0.250  Sum_probs=28.1

Q ss_pred             ceeeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       305 ~yFlaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      ....+.++++|.++.+.||+|..||.|.|-+-
T Consensus        16 ~~~~~~Alydy~a~~~~eLsf~~Gd~i~Vl~~   47 (72)
T 2l0a_A           16 EARKVRAIYDFEAAEDNELTFKAGEIITVLDD   47 (72)
T ss_dssp             CCEEEEESSCBCCSSTTBCCBCTTCEEEEEEE
T ss_pred             CCeEEEECCccCCCCCCccCCCCCCEEEEEEe
Confidence            44678999999999999999999999988653

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A

Probab=95.67  E-value=0.0061  Score=43.16  Aligned_cols=29  Identities=34%  Similarity=0.252  Sum_probs=25.6

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      -+.++++|.++.++||||..||.|.|-+-
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   31 (62)
T 2j6f_A            3 DYIVEYDYDAVHDDELTIRVGEIIRNVKK   31 (62)
T ss_dssp             CEEECSCBCCSSTTBCCBCTTCEEEEEEE
T ss_pred             EEEECccCCcCCcCCcCCcCCCEEEEEEe
Confidence            47899999999999999999999977553

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A

Probab=95.65  E-value=0.0074  Score=42.22  Aligned_cols=29  Identities=28%  Similarity=0.423  Sum_probs=26.2

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      .+.++++|.++.+.||||..||.|.|-+-
T Consensus         6 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   34 (59)
T 2g6f_X            6 VVRAKFNFQQTNEDELSFSKGDVIHVTRV   34 (59)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEEE
T ss_pred             EEEECceeCCCCcCCcCCCCCCEEEEEEe
Confidence            57899999999999999999999988653

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1

Probab=95.65  E-value=0.0083  Score=43.50  Aligned_cols=31  Identities=16%  Similarity=0.179  Sum_probs=26.9

Q ss_pred             ceeeEEecccCCC-CCCceeeeeeCCEEEEEe
Q 018995          305 GYFLGEVVHPYQA-ESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       305 ~yFlaev~hpF~a-esegELsLsvGDyVVVRq  335 (348)
                      ....+.++++|.| +.+.||+|..||.|.|-+
T Consensus         6 ~~~~~~al~dy~a~~~~~eLs~~~Gd~i~v~~   37 (72)
T 1spk_A            6 SGQKVKTIFPHTAGNNKTLLSFAQGDVLTLLI   37 (72)
T ss_dssp             CSCEEECSSCBCCSSCSSBCCBCTTCEEEECC
T ss_pred             CceEEEEeeeeCCCCCCCCCcCCCCCEEEEeE
Confidence            3456889999997 999999999999998853

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.63  E-value=0.015  Score=43.94  Aligned_cols=31  Identities=23%  Similarity=0.243  Sum_probs=27.5

Q ss_pred             eeeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       306 yFlaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      ...+.++++|+++.+.||+|..||.|.|-.-
T Consensus        17 ~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~   47 (88)
T 1x2q_A           17 ARKVRALYDFEAVEDNELTFKHGEIIIVLDD   47 (88)
T ss_dssp             CEEEEESSCCCCCSSSCCCCCSSCEEEEEEC
T ss_pred             CeEEEEcccCCCCCcCccCCCCCCEEEEEEe
Confidence            3568899999999999999999999988654

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=95.63  E-value=0.0088  Score=43.16  Aligned_cols=30  Identities=37%  Similarity=0.541  Sum_probs=26.6

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      -.+.++++|.++.+.||+|..||.|.|-.-
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   37 (70)
T 2da9_A            8 DYCKVIFPYEAQNDDELTIKEGDIVTLINK   37 (70)
T ss_dssp             EEEEECSCCCCSSTTBCCCCTTEEEEEEEC
T ss_pred             cEEEECcCCCCCCcCEeeEcCCCEEEEEEC
Confidence            457899999999999999999999988653

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=95.62  E-value=0.01  Score=43.76  Aligned_cols=31  Identities=13%  Similarity=0.172  Sum_probs=27.6

Q ss_pred             ceeeEEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       305 ~yFlaev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      .-..+.++++|.++.+.||+|..||.|.|-.
T Consensus         6 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~   36 (78)
T 2yuo_A            6 SGRRAKALLDFERHDDDELGFRKNDIITIIS   36 (78)
T ss_dssp             CCEEEEESSCBCCSSTTBCCBCTTCEEEEEE
T ss_pred             CceEEEECccCCCCCCCCccCCCCCEEEEEE
Confidence            3466899999999999999999999998865

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}

Probab=95.61  E-value=0.0092  Score=42.82  Aligned_cols=30  Identities=17%  Similarity=0.380  Sum_probs=26.9

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      ..+.++++|.++.+.||+|..||.|.|-+-
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   37 (68)
T 2djq_A            8 PRAKALCNYRGKNPGDLKFNKGDVILLRRQ   37 (68)
T ss_dssp             CEEEECSCCCSCCTTCCCCCTTCEEEEEEC
T ss_pred             eEEEECCCCCCCCcCCccCCCCCEEEEEEe
Confidence            568899999999999999999999988553

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D

Probab=95.61  E-value=0.0073  Score=42.14  Aligned_cols=27  Identities=19%  Similarity=0.258  Sum_probs=24.8

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEE
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVR  334 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVR  334 (348)
                      .+.++++|.++.++||||..||.|.|-
T Consensus         5 ~~~al~dy~~~~~~eLs~~~Gd~i~v~   31 (60)
T 2x3w_D            5 RVRALYDYDGQEQDELSFKAGDELTKL   31 (60)
T ss_dssp             EEEECSCBCCSSSSBCCBCTTCEEEEC
T ss_pred             EEEECcccCccCCCcccCCCCCEEEEE
Confidence            378999999999999999999999883

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A

Probab=95.59  E-value=0.0076  Score=42.67  Aligned_cols=30  Identities=27%  Similarity=0.431  Sum_probs=26.9

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      +.+.++++|.++.+.||+|..||.|.|-+-
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   36 (64)
T 2ak5_A            7 LVVRAKFNFQQTNEDELSFSKGDVIHVTRV   36 (64)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEEC
T ss_pred             EEEEEccccCCcCcCcccCCCCCEEEEeEe
Confidence            568899999999999999999999988653

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} SCOP: b.34.2.0 PDB: 2kt1_A

Probab=95.59  E-value=0.0089  Score=45.90  Aligned_cols=30  Identities=30%  Similarity=0.406  Sum_probs=27.3

Q ss_pred             ceeeEEecccCCCCCCceeeeeeCCEEEEE
Q 018995          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVR  334 (348)
Q Consensus       305 ~yFlaev~hpF~aesegELsLsvGDyVVVR  334 (348)
                      .-+.+.++++|.++.+.||+|..||.|.|-
T Consensus        10 ~~~~~~Alydy~a~~~~ELsf~~GD~I~V~   39 (90)
T 3o5z_A           10 EGFQYRALYPFRRERPEDLELLPGDVLVVS   39 (90)
T ss_dssp             SEEEEEECSCBCCCSTTBCCBCTTCEEEEE
T ss_pred             CCcEEEEeeeECCCCCCccCCcCCCEEEEE
Confidence            447789999999999999999999999884

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A

Probab=95.57  E-value=0.0076  Score=44.30  Aligned_cols=29  Identities=38%  Similarity=0.611  Sum_probs=26.0

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      .+.++++|.++.+.||||..||.|.|-.-
T Consensus         4 ~~~Alydy~a~~~~eLs~~~Gd~i~vl~~   32 (69)
T 2ydl_A            4 YCKVIFPYEAQNDDELTIKEGDIVTLINK   32 (69)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEES
T ss_pred             EEEEcccCCCCCCCccccCCCCEEEEEEc
Confidence            36899999999999999999999988654

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.56  E-value=0.013  Score=44.50  Aligned_cols=30  Identities=33%  Similarity=0.357  Sum_probs=27.1

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      +.+.++++|.++.+.||+|..||.|.|-+-
T Consensus        18 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   47 (88)
T 2cub_A           18 MPAYVKFNYMAEREDELSLIKGTKVIVMEK   47 (88)
T ss_dssp             EEEEESSCCCCCSTTBCCCCTTEEEEEEEE
T ss_pred             CEEEEccccCCCCCCCcCCCCCCEEEEEEc
Confidence            568899999999999999999999988664

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.54  E-value=0.012  Score=45.46  Aligned_cols=30  Identities=17%  Similarity=0.175  Sum_probs=27.0

Q ss_pred             ceeeEEecccCCCC--------CCceeeeeeCCEEEEE
Q 018995          305 GYFLGEVVHPYQAE--------SDVELTLSVGDYVVVR  334 (348)
Q Consensus       305 ~yFlaev~hpF~ae--------segELsLsvGDyVVVR  334 (348)
                      ...++.++|+|+++        .+.||+|..||.|.|-
T Consensus        16 ~~~~~~Alydy~~~~~~~~~~~~~~eLsf~~Gd~i~vl   53 (97)
T 2csq_A           16 PARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVY   53 (97)
T ss_dssp             CCEEEECSSCBCTTTTSSCHHHHTTBCCBCTTCEEEEE
T ss_pred             CceEEEEccccCCCcccccCCCCCCccCCCCCCEEEEE
Confidence            45678999999999        7999999999999886

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=95.52  E-value=0.011  Score=43.20  Aligned_cols=31  Identities=19%  Similarity=0.281  Sum_probs=27.4

Q ss_pred             eeeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       306 yFlaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      -..+.++++|.++.+.||+|..||.|.|-+-
T Consensus        10 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   40 (74)
T 1j3t_A           10 NLKAQALCSWTAKKDNHLNFSKHDIITVLEQ   40 (74)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEE
T ss_pred             CeEEEECCCCCCCCCCccCCCCCCEEEEEec
Confidence            3568999999999999999999999988653

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}

Probab=95.52  E-value=0.0095  Score=41.90  Aligned_cols=30  Identities=17%  Similarity=0.187  Sum_probs=27.0

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      ..+.++++|.++.+.||||..||.|.|-+-
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   36 (60)
T 2gnc_A            7 EFAIAKFDYVGRSARELSFKKGASLLLYHR   36 (60)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEEE
T ss_pred             EEEEECCCCCcCCcCCcCCCCCCEEEEEEe
Confidence            567899999999999999999999988654

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}

Probab=95.50  E-value=0.0087  Score=43.05  Aligned_cols=29  Identities=38%  Similarity=0.376  Sum_probs=26.2

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      ..+.++++|.++.+.||+|..||.|.|-.
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~   35 (71)
T 2jt4_A            7 KRGIVQYDFMAESQDELTIKSGDKVYILD   35 (71)
T ss_dssp             EEEEECSCBCCSSTTBCCBCTTCEEEEEE
T ss_pred             CEEEEcccCCCCCCCcccCCCCCEEEEEE
Confidence            46789999999999999999999998855

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=95.50  E-value=0.0093  Score=43.78  Aligned_cols=32  Identities=19%  Similarity=0.365  Sum_probs=28.0

Q ss_pred             ceeeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       305 ~yFlaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      ....+.++++|.++.+.||+|..||.|.|-+.
T Consensus         9 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   40 (76)
T 1ujy_A            9 HQLIVKARFNFKQTNEDELSVCKGDIIYVTRV   40 (76)
T ss_dssp             CCEEEECCSCBCCSSTTSCCBCSSCCEEESSC
T ss_pred             CCEEEEECccCCcCCCCcccCCCCCEEEEEEe
Confidence            34668999999999999999999999998653

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}

Probab=95.49  E-value=0.0086  Score=43.52  Aligned_cols=30  Identities=37%  Similarity=0.541  Sum_probs=26.7

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      -.+.++++|.++.+.||+|..||.|.|-.-
T Consensus        10 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   39 (73)
T 2k9g_A           10 DYCKVIFPYEAQNDDELTIKEGDIVTLINK   39 (73)
T ss_dssp             EEEEECSCBCCSSTTBCCBCTTCEEEEEEC
T ss_pred             cEEEECccCCCCCCCeeeECCCCEEEEEEC
Confidence            356889999999999999999999998664

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}

Probab=95.49  E-value=0.0082  Score=41.59  Aligned_cols=27  Identities=30%  Similarity=0.460  Sum_probs=24.9

Q ss_pred             EEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          309 GEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       309 aev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      +.++++|.++.+.||+|..||.|.|-+
T Consensus         4 ~~al~d~~~~~~~eLs~~~Gd~i~v~~   30 (59)
T 1yn8_A            4 AVALYDFEPENDNELRLAEGDIVFISY   30 (59)
T ss_dssp             EEECSCBCCCSTTBCCBCTTCEEEEEE
T ss_pred             EEECccCCCCCCCCcCCCCCCEEEEEE
Confidence            679999999999999999999998854

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}

Probab=95.49  E-value=0.009  Score=41.89  Aligned_cols=29  Identities=21%  Similarity=0.308  Sum_probs=26.1

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      .+.++++|.++.+.||||..||.|.|-+-
T Consensus         7 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   35 (60)
T 2xmf_A            7 QCKALYAYDAQDTDELSFNANDIIDIIKE   35 (60)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEEE
T ss_pred             EEEECccCCcCCcCCcCCCCCCEEEEEEe
Confidence            46899999999999999999999988654

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A

Probab=95.49  E-value=0.0089  Score=42.18  Aligned_cols=29  Identities=21%  Similarity=0.365  Sum_probs=26.2

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      .+.++++|.++.++||+|..||.|.|-.-
T Consensus         8 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   36 (62)
T 2iim_A            8 LVIALHSYEPSHDGDLGFEKGEQLRILEQ   36 (62)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEC
T ss_pred             EEEEcccCCCCCCCCcCCCCCCEEEEEEc
Confidence            57899999999999999999999988654

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A

Probab=95.48  E-value=0.0097  Score=42.58  Aligned_cols=31  Identities=10%  Similarity=0.211  Sum_probs=27.5

Q ss_pred             eeeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       306 yFlaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      +..+.++++|.++.+.||||..||.|.|-+-
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   36 (67)
T 2o9s_A            6 TGEAIAKFNFNGDTQVEMSFRKGERITLLRQ   36 (67)
T ss_dssp             SEEEEECSCBCCSSTTBCCBCTTCEEEEEEE
T ss_pred             CEEEEECccCCcCCcCccCCCCCCEEEEEEe
Confidence            4668999999999999999999999988653

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.47  E-value=0.013  Score=42.12  Aligned_cols=31  Identities=13%  Similarity=0.201  Sum_probs=27.2

Q ss_pred             eeeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       306 yFlaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      .-++.++++|.++.+.||+|..||.|.|-+-
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   37 (68)
T 1x2k_A            7 GKVFRALYTFEPRTPDELYFEEGDIIYITDM   37 (68)
T ss_dssp             SEEEEESSCCCCCSTTBCCCCSSCEEEEEEC
T ss_pred             cEEEEECceECCCCCCcccCCCCCEEEEEEc
Confidence            3567899999999999999999999988643

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A

Probab=95.47  E-value=0.0079  Score=42.33  Aligned_cols=29  Identities=17%  Similarity=0.220  Sum_probs=25.9

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      .+.++++|+++.+.||+|..||.|.|-+-
T Consensus         5 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   33 (61)
T 1y0m_A            5 AVKALFDYKAQREDELTFTKSAIIQNVEK   33 (61)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEEC
T ss_pred             EEEECcCCCcCCCCCcCCcCCCEEEEEEe
Confidence            47899999999999999999999988553

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.45  E-value=0.02  Score=42.37  Aligned_cols=29  Identities=21%  Similarity=0.260  Sum_probs=26.3

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      .+.++++|.++.+.||+|..||.|.|-+-
T Consensus        19 ~~~al~dy~~~~~~eLsf~~Gd~i~v~~~   47 (78)
T 2ed0_A           19 KVVAIYDYTKDKEDELSFQEGAIIYVIKK   47 (78)
T ss_dssp             EEEECSCBCCSSTTBCCBCSSCEEEEEEE
T ss_pred             EEEECccCCccCcCcccccCCCEEEEEEe
Confidence            57899999999999999999999988654

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A

Probab=95.45  E-value=0.0095  Score=41.66  Aligned_cols=29  Identities=17%  Similarity=0.296  Sum_probs=26.2

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      .+.++++|.++.+.||||..||.|.|-+-
T Consensus         5 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   33 (60)
T 1oot_A            5 KAVALYSFAGEESGDLPFRKGDVITILKK   33 (60)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEC
T ss_pred             EEEECccCCcCCcCEeeEcCCCEEEEEEe
Confidence            47899999999999999999999998654

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1

Probab=95.44  E-value=0.0094  Score=42.17  Aligned_cols=29  Identities=24%  Similarity=0.292  Sum_probs=26.1

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      .+.++++|.++.++||+|..||.|.|-+-
T Consensus         7 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   35 (62)
T 1uj0_A            7 RVRALYDFEAVEDNELTFKHGELITVLDD   35 (62)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEC
T ss_pred             EEEECccCCCCCcCCcCCCCCCEEEEEEe
Confidence            57889999999999999999999988653

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=95.44  E-value=0.0083  Score=43.19  Aligned_cols=29  Identities=21%  Similarity=0.188  Sum_probs=26.2

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      +.+.++++|+++.+.||+|..||.|.|-+
T Consensus         8 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~   36 (69)
T 2eqi_A            8 RTVKALYDYKAKRSDELTFCRGALIHNVS   36 (69)
T ss_dssp             CEEEESSCBCCCSSSCCCBCTTCEEESCC
T ss_pred             cEEEECeeECCCCcCccCCCCCCEEEEEE
Confidence            56899999999999999999999998743

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=95.43  E-value=0.015  Score=42.65  Aligned_cols=31  Identities=26%  Similarity=0.358  Sum_probs=27.6

Q ss_pred             eeeEEecccCCCC-CCceeeeeeCCEEEEEee
Q 018995          306 YFLGEVVHPYQAE-SDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       306 yFlaev~hpF~ae-segELsLsvGDyVVVRqV  336 (348)
                      -..+.++++|.++ .+.||+|..||.|.|-.-
T Consensus         9 ~~~~~al~dy~~~~~~~eLs~~~Gd~i~v~~~   40 (77)
T 2enm_A            9 ATKARVMYDFAAEPGNNELTVTEGEIITVTNP   40 (77)
T ss_dssp             CEEEEESSCCCCCTTSSBCCCCTTCEEEEEES
T ss_pred             CcEEEECccCCCCCCCCeecCCCCCEEEEeEc
Confidence            4678999999999 999999999999988653

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A

Probab=95.43  E-value=0.0095  Score=43.11  Aligned_cols=30  Identities=20%  Similarity=0.076  Sum_probs=26.7

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      .++.++++|.++.+.||+|..||.|.|-+-
T Consensus         9 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~   38 (68)
T 2k2m_A            9 KWVLCNYDFQARNSSELSVKQRDVLEVLDD   38 (68)
T ss_dssp             CEEEESSCBCCCSSSBCCBCTTCEEEEEEC
T ss_pred             EEEEECccCCCCCCCcccCCCCCEEEEEEc
Confidence            367899999999999999999999988653

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=95.41  E-value=0.0093  Score=44.05  Aligned_cols=30  Identities=23%  Similarity=0.421  Sum_probs=26.5

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      .++.++++|+++.+.||+|..||.|.|-+-
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   37 (80)
T 1ue9_A            8 EIAQVTSAYVASGSEQLSLAPGQLILILKK   37 (80)
T ss_dssp             EEEEECSCCCCCSTTBCCCCTTCEEEEEEE
T ss_pred             eEEEECcccCCCCCCCCCCCCCCEEEEEEe
Confidence            457899999999999999999999988553

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=95.38  E-value=0.0084  Score=44.81  Aligned_cols=31  Identities=16%  Similarity=0.285  Sum_probs=26.1

Q ss_pred             ceeeEEecccCCCCCCc-eeeeeeCCEEEEEe
Q 018995          305 GYFLGEVVHPYQAESDV-ELTLSVGDYVVVRK  335 (348)
Q Consensus       305 ~yFlaev~hpF~aeseg-ELsLsvGDyVVVRq  335 (348)
                      -.|.|.++++|.++.++ |||+..||.|.|=.
T Consensus         6 ~~~~~~aly~y~a~~~~dELsf~~Gd~i~Vl~   37 (69)
T 1nm7_A            6 HHHFARALYDFVPENPEMEVALKKGDLMAILS   37 (69)
T ss_dssp             ---CEEECSCCCCSSTTSCCCCCTTCEEEECC
T ss_pred             eeeEEEEEecccCCCCCCccCCCCCCEEEEEe
Confidence            46899999999999999 99999999998743

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens}

Probab=95.36  E-value=0.013  Score=42.19  Aligned_cols=29  Identities=31%  Similarity=0.268  Sum_probs=26.4

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      .+.++++|.++.+.||+|..||.|.|-+-
T Consensus        10 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   38 (69)
T 2dil_A           10 EYRALYDYTAQNPDELDLSAGDILEVILE   38 (69)
T ss_dssp             EEECCSCBCCSSSSSCCBCTTCEEEEEEC
T ss_pred             EEEECccCCccCcCccCCCCCCEEEEEEC
Confidence            57899999999999999999999988654

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.35  E-value=0.015  Score=43.20  Aligned_cols=32  Identities=22%  Similarity=0.250  Sum_probs=28.5

Q ss_pred             ceeeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       305 ~yFlaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      ....+.++++|.++.+.||+|..||.|.|-+-
T Consensus         9 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   40 (81)
T 2ysq_A            9 SIVSAEAVWDHVTMANRELAFKAGDVIKVLDA   40 (81)
T ss_dssp             CCEEEEESSCCCCSSSSSCCCCTTCEEEEEEC
T ss_pred             CceEEEEeeeECCCCCCcCCCCCCCEEEEEEE
Confidence            45778999999999999999999999988653

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.35  E-value=0.011  Score=42.62  Aligned_cols=29  Identities=14%  Similarity=0.167  Sum_probs=26.2

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      ++.++++|.++.+.||+|..||.|.|-+-
T Consensus         9 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~   37 (68)
T 1wxb_A            9 YVKILYDFTARNANELSVLKDEVLEVLED   37 (68)
T ss_dssp             CEECSSCBCCSSSSBCCBCTTCEEEEEEC
T ss_pred             EEEECccCCCCCCCccCCCCCCEEEEEEc
Confidence            57899999999999999999999998653

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A

Probab=95.34  E-value=0.011  Score=41.33  Aligned_cols=28  Identities=21%  Similarity=0.241  Sum_probs=25.2

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      .+.++++|.++.+.||+|..||.|.|=.
T Consensus         7 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~   34 (63)
T 3eg3_A            7 LFVALYDFVASGDNTLSITKGEKLRVLG   34 (63)
T ss_dssp             EEEESSCBCCCSSSBCCBCTTCEEEEEE
T ss_pred             EEEEcceECCCCCCccCCCCCCEEEEEE
Confidence            5678999999999999999999997754

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}

Probab=95.33  E-value=0.013  Score=42.57  Aligned_cols=29  Identities=38%  Similarity=0.474  Sum_probs=26.0

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      .+.++++|.++.++||||..||.|.|-+-
T Consensus         3 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~   31 (65)
T 2nwm_A            3 AARLKFDFQAQSPKELTLQKGDIVYIHKE   31 (65)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEEC
T ss_pred             EEEEeeeECCCCcCccCCcCCCEEEEEEe
Confidence            46899999999999999999999998654

>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}

Probab=95.33  E-value=1.7  Score=39.84  Aligned_cols=200  Identities=12%  Similarity=0.140  Sum_probs=112.0

Q ss_pred             HHHHHHhhhhhchhhhhhhhhccceeeeecceeehhhhhhhhhhhhccC---CCCCCCchHHHHHHHHhHHHHHHHHHHH
Q 018995           49 RLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGS---DNTCTSGNTLSKAALSYGRARAQMEKER  125 (348)
Q Consensus        49 ~LekLY~STRaaKhFQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~---en~~~~~~~LarAa~~yg~a~~~mEkEr  125 (348)
                      .++.|+.-+..|..|=+||..=+-==   ..=--|.+.+|..=|+||..   .++ ..| +|..|-..+-..-..+-+.+
T Consensus        30 g~~~L~~r~~~g~~~~~el~~f~keR---a~IE~eYak~L~kLakk~~~~~~~~~-e~g-tl~~aw~~l~~e~e~~a~~H  104 (350)
T 3aco_A           30 NYKRTVKRIDDGHRLCSDLMNCLHER---ARIEKAYAQQLTEWARRWRQLVEKGP-QYG-TVEKAWMAFMSEAERVSELH  104 (350)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHTSS-CCH-HHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhccCCC-CCc-hHHHHHHHHHHHHHHHHHHH
Confidence            56677777777766666654321000   00013567888888898863   222 234 78888777777777777888


Q ss_pred             hHHHHHHhhhhhhHHHHhhcCC-------Cchhhh---------------------hHHHHHHHHHHHHHHHHHHHHHHh
Q 018995          126 GNLLKALGTQVAEPLRAMVLGA-------PLDDAR---------------------HLAQRYDRMRQEAEAQAIEVSKRQ  177 (348)
Q Consensus       126 e~l~r~L~~QV~ePLRaMv~Ga-------PLEDAR---------------------hLaqRYdRmRQEaE~Qa~eV~rRq  177 (348)
                      ..|-..|.++|.+||+..+.-.       =+..-+                     -...+|+..++|+|.--     .+
T Consensus       105 ~~la~~L~~~v~~~l~~~~~e~~~k~~~~~~ke~K~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~c~e~e~a~-----~~  179 (350)
T 3aco_A          105 LEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAI-----SR  179 (350)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHTTSCBCTTSSBHHHHHHHHHHHHHTSHHHHHHHHHHHTTTTHHHHHHHHHHHH-----HH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH
Confidence            8999999999999999875321       011112                     22345666666654322     11


Q ss_pred             hhhc--CCCCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHH--------------HHhhHHHHHHHHHHHHhHH
Q 018995          178 AKVR--ETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVE--------------SQQQRLTLQRLIAMVEAER  241 (348)
Q Consensus       178 ~k~r--es~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVE--------------aQQQrlTlQRLiaMVeAER  241 (348)
                      ....  +++.++..   ++-++.|+..++..+...-.+=..++...+              .+-|.+-.+||..|-+.=.
T Consensus       180 ~~~~~~d~~~~~k~---~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~~~Q~lee~Rl~~lk~~l~  256 (350)
T 3aco_A          180 EANSKADPSLNPEQ---LKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEEKRLRFFREVLL  256 (350)
T ss_dssp             HTTSSSSSSCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhccCccCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111  12223333   344455666666555555444334433333              3455666667776666666


Q ss_pred             HHHHHHH----HHHHHHHHHHHhh
Q 018995          242 TYHQRVL----QILDQLEGEMLSE  261 (348)
Q Consensus       242 ~YHqrv~----~ILd~L~~eMvsE  261 (348)
                      .|+..+-    .++++.+.+|...
T Consensus       257 ~~~~~l~~~~~~~~~~~~~~l~~~  280 (350)
T 3aco_A          257 EVQKHLDLSNVAGYKAIYHDLEQS  280 (350)
T ss_dssp             HHHHHHCSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhccchhHHHHHHHHHHH
Confidence            6665532    3566666655444

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1

Probab=95.29  E-value=0.01  Score=42.63  Aligned_cols=29  Identities=17%  Similarity=0.235  Sum_probs=25.8

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      .+.++++|.++.++||+|..||.|.|-+-
T Consensus         4 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   32 (67)
T 1gl5_A            4 IVVAMYDFQATEAHDLRLERGQEYIILEK   32 (67)
T ss_dssp             CEEECSCBCCSSSSBCCBCTTCEEEEEEC
T ss_pred             EEEECccCCCCCCCeecCCcCCEEEEEEc
Confidence            36789999999999999999999988654

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.27  E-value=0.0087  Score=43.18  Aligned_cols=29  Identities=31%  Similarity=0.378  Sum_probs=26.2

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      .+.++++|.++.+.||+|..||.|.|-+-
T Consensus        10 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   38 (70)
T 2ega_A           10 QYVVVSNYKKQENSELSLQAGEVVDVIEK   38 (70)
T ss_dssp             CEECCSCCCCCSSSSCCCCTTCBCEEEEE
T ss_pred             EEEECceECCCCCCcccCCCCCEEEEEEc
Confidence            47899999999999999999999988654

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.27  E-value=0.014  Score=41.82  Aligned_cols=30  Identities=27%  Similarity=0.272  Sum_probs=26.5

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      ..+.++++|.++.+.||+|..||.|.|-+-
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   37 (70)
T 2ct3_A            8 TPYRAMYQYRPQNEDELELREGDRVDVMQQ   37 (70)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTEEEEEEEE
T ss_pred             cEEEECccCCcCCcCCccCCCCCEEEEEEE
Confidence            457899999999999999999999988553

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A

Probab=95.24  E-value=0.011  Score=41.40  Aligned_cols=28  Identities=25%  Similarity=0.418  Sum_probs=24.8

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      .+.++++|.++.+.||++..||.|.|-+
T Consensus         8 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~   35 (64)
T 4f14_A            8 TYRAMYDYSAQDEDEVSFRDGDYIVNVQ   35 (64)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEE
T ss_pred             EEEECeeeCCcCCCcCCCCCCCEEEEEE
Confidence            4678999999999999999999997644

>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} SCOP: b.34.2.1 PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A

Probab=95.23  E-value=0.014  Score=43.61  Aligned_cols=29  Identities=21%  Similarity=0.406  Sum_probs=26.8

Q ss_pred             eeeEEecccCCCCCCceeeeeeCCEEEEE
Q 018995          306 YFLGEVVHPYQAESDVELTLSVGDYVVVR  334 (348)
Q Consensus       306 yFlaev~hpF~aesegELsLsvGDyVVVR  334 (348)
                      -+.+.++|+|.++.++||+|..||.|.|-
T Consensus         5 ~~~~~Alydy~~~~~~eLs~~~Gd~I~V~   33 (83)
T 3i5r_A            5 GYQYRALYDYKKEREEDIDLHLGDILTVN   33 (83)
T ss_dssp             EEEEEECSCBCCCSTTBCCBCTTCEEEEE
T ss_pred             CcEEEEccccCCCCCCccccCCCCEEEEe
Confidence            46788999999999999999999999886

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus}

Probab=95.21  E-value=0.033  Score=43.15  Aligned_cols=30  Identities=13%  Similarity=0.218  Sum_probs=26.7

Q ss_pred             eeeEEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       306 yFlaev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      ...+.++++|.++.+.||+|..||.|.|-+
T Consensus        27 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~   56 (109)
T 2yt6_A           27 VTIFVALYDYEARTTEDLSFKKGERFQIIN   56 (109)
T ss_dssp             CCEEEESSCCCCSSTTSCCCCTTCEEEEEE
T ss_pred             CEEEEECccCCCCCCCccCCCCCCEEEEEE
Confidence            356899999999999999999999998754

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A

Probab=95.20  E-value=0.011  Score=42.67  Aligned_cols=31  Identities=16%  Similarity=0.327  Sum_probs=27.5

Q ss_pred             eeeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       306 yFlaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      ...+.++++|.++.++||+|..||.|.|-.-
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   36 (71)
T 1u5s_A            6 LHVVQTLYPFSSVTEEELNFEKGETMEVIEK   36 (71)
T ss_dssp             SSEEEESSCCCCCSSSBCCCCSSCCEEEEEC
T ss_pred             cEEEEEcccCCCCCCCcccCCCCCEEEEEEC
Confidence            3568999999999999999999999988664

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.19  E-value=0.012  Score=42.46  Aligned_cols=29  Identities=28%  Similarity=0.339  Sum_probs=26.0

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      .+.++++|.++.+.||+|..||.|.|-+-
T Consensus         9 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   37 (68)
T 2dmo_A            9 AHRVLFGFVPETKEELQVMPGNIVFVLKK   37 (68)
T ss_dssp             EEEECSSCCCCSSSSCCCCTTCEEEECEE
T ss_pred             EEEECcCCCcCCcCCCCCCCCCEEEEEEe
Confidence            47899999999999999999999988553

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...

Probab=95.19  E-value=0.013  Score=40.86  Aligned_cols=29  Identities=34%  Similarity=0.386  Sum_probs=25.8

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      .+.++++|.++.+.||++..||.|.|-+-
T Consensus         8 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   36 (62)
T 3ngp_A            8 LVLVLYDYQEKSPRELTVKKGDILTLLNS   36 (62)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEEC
T ss_pred             EEEECcCCCCCCCCCccCCCCCEEEEeEe
Confidence            56889999999999999999999988553

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=95.19  E-value=0.011  Score=43.86  Aligned_cols=29  Identities=17%  Similarity=0.202  Sum_probs=26.1

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      ++.++++|.++.+.||+|..||.|.|-+.
T Consensus        15 ~~~Alydy~~~~~~eLs~~~Gd~i~vl~~   43 (79)
T 1uhc_A           15 VYFAVYTFKARNPNELSVSANQKLKILEF   43 (79)
T ss_dssp             CEEESSCBCCCSSSBCCBCTTCEEEEEES
T ss_pred             EEEECccCCCCCCCccCCCCCCEEEEEEC
Confidence            46789999999999999999999988664

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=95.18  E-value=0.0086  Score=43.78  Aligned_cols=29  Identities=21%  Similarity=0.273  Sum_probs=25.7

Q ss_pred             ceeeEEecccCCCCCCceeeeeeCCEEEE
Q 018995          305 GYFLGEVVHPYQAESDVELTLSVGDYVVV  333 (348)
Q Consensus       305 ~yFlaev~hpF~aesegELsLsvGDyVVV  333 (348)
                      ....+.++++|.++.+.||+|..||.|.|
T Consensus         9 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v   37 (72)
T 1ugv_A            9 PFRKAKALYACKAEHDSELSFTAGTVFDN   37 (72)
T ss_dssp             SCCCEEESSCBCCCSSSBCCBCTTCEEBS
T ss_pred             CccEEEEccccCCcCCCEeCCcCCCEEEE
Confidence            34568999999999999999999999964

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=95.17  E-value=0.015  Score=42.33  Aligned_cols=30  Identities=23%  Similarity=0.283  Sum_probs=26.7

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      -.+.++++|+++.+.||+|..||.|.|-+-
T Consensus         8 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~   37 (77)
T 2d8j_A            8 QYFVALFDYQARTAEDLSFRAGDKLQVLDT   37 (77)
T ss_dssp             EEEEESSCBCCSSSSBCCBCTTCCEEEEEC
T ss_pred             CEEEEccCCCCCCCCccCCCCCCEEEEEEC
Confidence            367899999999999999999999988654

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.16  E-value=0.015  Score=41.84  Aligned_cols=29  Identities=7%  Similarity=0.187  Sum_probs=26.4

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      .+.++++|.++.+.||+|..||.|.|-+-
T Consensus         9 ~~~alydy~~~~~~eLs~~~Gd~i~vl~~   37 (70)
T 2ct4_A            9 HCVAIYHFEGSSEGTISMAEGEDLSLMEE   37 (70)
T ss_dssp             EEEESSCBCCCSTTCCCBCTTCEEEEEEC
T ss_pred             EEEEcccCCCCCCCcCCCCCCCEEEEEec
Confidence            48899999999999999999999998654

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A

Probab=95.16  E-value=0.013  Score=40.37  Aligned_cols=28  Identities=25%  Similarity=0.318  Sum_probs=25.0

Q ss_pred             EEecccC-CCCCCceeeeeeCCEEEEEee
Q 018995          309 GEVVHPY-QAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       309 aev~hpF-~aesegELsLsvGDyVVVRqV  336 (348)
                      +.++++| .++.++||+|..||.|.|-+-
T Consensus         3 ~~al~d~~~~~~~~eLs~~~Gd~i~v~~~   31 (58)
T 1zuy_A            3 FEAAYDFPGSGSPSELPLKKGDVIYITRE   31 (58)
T ss_dssp             EEESSCBCCCSCTTBCCBCTTCEEEEEEE
T ss_pred             EEEecccCCCCCCCcCCCCCCCEEEEEEe
Confidence            6799999 899999999999999988554

>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}

Probab=95.15  E-value=1.7  Score=38.80  Aligned_cols=213  Identities=14%  Similarity=0.175  Sum_probs=119.3

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCCcceechHHHhhHHHHHHHHhhhhhchhhhhhhhhccceeeeecceeehhhhhhhh
Q 018995           11 LREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSE   90 (348)
Q Consensus        11 lREqVAkQQQAV~Kqfg~~gy~~~d~~v~DEaElq~HQ~LekLY~STRaaKhFQrdIVRgvEGfis~gsKq~Ei~~KLae   90 (348)
                      +...+.|-.|-|.-.+|.+- ...|..+-|+  -++.+.||+      .++.+|+++-.=.+.+-..-.-|    ..+++
T Consensus         9 ~~K~~~R~~q~lkqk~G~~e-~T~D~~Fe~~--e~rF~~le~------~~~kL~k~~k~y~~ai~~~~~~q----~~~~~   75 (237)
T 4avm_A            9 VQKKFSRAQEKVLQKLGKAV-ETKDERFEQS--ASNFYQQQA------EGHKLYKDLKNFLSAVKVMHESS----KRVSE   75 (237)
T ss_dssp             HHHHHHHHHHHHHHHTTSSC-CCCCHHHHHH--HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH----HHHHH
T ss_pred             HHHHHhhhhHHHHHHcCCCc-ccccHHHHHH--HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence            44457777888888888332 2344444222  233444443      34566666644333333322223    33444


Q ss_pred             hhhh-ccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHH-------HHHH
Q 018995           91 DSRK-YGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQR-------YDRM  162 (348)
Q Consensus        91 Dc~K-YG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqR-------YdRm  162 (348)
                      ...- |+...+   |.      ..|......++.=-.+++..|.++|..||..+..=  +.+-+.+...       |||.
T Consensus        76 ~l~~~y~~~~~---~~------~~~~~~~~~~~~l~~~~~~~l~~~vi~Pl~~~~~~--~~~i~k~I~KR~~kllDyd~~  144 (237)
T 4avm_A           76 TLQEIYSSEWD---GH------EELKAIVWNNDLLWEDYEEKLADQAVRTMEIYVAQ--FSEIKERIAKRGRKLVDYDSA  144 (237)
T ss_dssp             HHHHHSCTTST---TH------HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCccC---cH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHH
Confidence            3322 433321   21      12333333333334566677888899999988743  3444444333       5666


Q ss_pred             HHHHHHHHHHHHHHhhhhcCCCCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHH
Q 018995          163 RQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERT  242 (348)
Q Consensus       163 RQEaE~Qa~eV~rRq~k~res~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeAER~  242 (348)
                      |..++.       =+.|    + .- ...||..||.++.+.+.....|...--.=|-..-.=...+--.-|-++|..++.
T Consensus       145 ~~~~~k-------l~~k----~-~k-d~~kl~kae~el~~a~~~ye~lN~~L~~eLP~l~~~~~~~~~~~~~~~i~~q~~  211 (237)
T 4avm_A          145 RHHLEA-------VQNA----K-KK-DEAKTAKAEEEFNKAQTVFEDLNQELLEELPILYNSRIGCYVTIFQNISNLRDV  211 (237)
T ss_dssp             HHHHHH-------HHTC----S-SC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-------HHhc----c-CC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555543       2222    1 11 257999999999998888877776554444433322222223456778889999


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q 018995          243 YHQRVLQILDQLEGEMLS  260 (348)
Q Consensus       243 YHqrv~~ILd~L~~eMvs  260 (348)
                      ||..+..+...|.+=|..
T Consensus       212 f~~~~~~~~~~l~~~~~~  229 (237)
T 4avm_A          212 FYREMSKLNHNLYEVMSK  229 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHH
Confidence            999998888888876653

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A

Probab=95.15  E-value=0.013  Score=41.51  Aligned_cols=30  Identities=27%  Similarity=0.268  Sum_probs=26.5

Q ss_pred             eeeEEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       306 yFlaev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      ...+.++++|+++.+.|||+..||.|.|-.
T Consensus        21 ~~~~~alydy~a~~~~eLsf~~Gd~i~v~~   50 (62)
T 1g2b_A           21 KELVLALYDYQEKSPREVTMKKGDILTLLN   50 (62)
T ss_dssp             SCEEEECSCBCCSSTTBCCBCTTCEEEEEE
T ss_pred             ceEEEEeeeECCCCCCccCCCCCCEEEEEE
Confidence            356889999999999999999999997754

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus}

Probab=95.14  E-value=0.012  Score=47.77  Aligned_cols=31  Identities=23%  Similarity=0.349  Sum_probs=27.5

Q ss_pred             ceeeEEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       305 ~yFlaev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      +.+++.++++|+++.+.||||..||.|.|-.
T Consensus         2 ~~~~~~Alydy~a~~~~ELsf~~Gd~i~vl~   32 (120)
T 2kym_A            2 APLFAVTLYEFKAERDDELDVSPGENLSICA   32 (120)
T ss_dssp             CCCEEEECSCBCCCSTTCCCBCTTCEEEEEE
T ss_pred             CCEEEEEcccCCCCCCCccCCCCCCEEEEEE
Confidence            3467899999999999999999999998754

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}

Probab=95.13  E-value=0.013  Score=42.32  Aligned_cols=30  Identities=27%  Similarity=0.452  Sum_probs=26.5

Q ss_pred             eeEEecccCCCC--CCceeeeeeCCEEEEEee
Q 018995          307 FLGEVVHPYQAE--SDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       307 Flaev~hpF~ae--segELsLsvGDyVVVRqV  336 (348)
                      ..+.++++|.++  ++.||+|..||.|.|-+-
T Consensus         7 ~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~   38 (67)
T 2eyx_A            7 IYARVIQKRVPNAYDKTALALEVGELVKVTKI   38 (67)
T ss_dssp             CBEEECCCBCCCTTCSSBCCBCSSEEEEEEEE
T ss_pred             EEEEEeEEECCCCCCCCccccCCCCEEEEEEe
Confidence            468899999999  999999999999988654

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=95.11  E-value=0.0095  Score=42.76  Aligned_cols=29  Identities=34%  Similarity=0.416  Sum_probs=25.7

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      -.+.++++|.++.+.||+|..||.|.|-+
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~   36 (68)
T 1wi7_A            8 RRCQVAFSYLPQNDDELELKVGDIIEVVG   36 (68)
T ss_dssp             CCEEESSCBCCSSTTBCCBCTTCEECCCE
T ss_pred             CEEEECccCCcCCCCCccCcCCCEEEEEE
Confidence            34789999999999999999999998754

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A

Probab=95.10  E-value=0.01  Score=43.58  Aligned_cols=29  Identities=24%  Similarity=0.298  Sum_probs=26.1

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      ..+.++++|.++.+.||||..||.|.|-+
T Consensus        10 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~   38 (74)
T 1gbq_A           10 MEAIAKYDFKATADDELSFKRGDILKVLN   38 (74)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEECCB
T ss_pred             eEEEECccCCCCCCCeeeEcCCCEEEEeE
Confidence            45899999999999999999999998744

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=95.09  E-value=0.017  Score=42.50  Aligned_cols=32  Identities=16%  Similarity=0.245  Sum_probs=27.9

Q ss_pred             ceeeEEecccCCCCCCc-eeeeeeCCEEEEEee
Q 018995          305 GYFLGEVVHPYQAESDV-ELTLSVGDYVVVRKV  336 (348)
Q Consensus       305 ~yFlaev~hpF~aeseg-ELsLsvGDyVVVRqV  336 (348)
                      ....+.++++|.++.+. ||+|..||.|.|-.-
T Consensus        13 ~~~~~~alydy~~~~~~~eLs~~~Gd~i~v~~~   45 (80)
T 2v1r_A           13 KLEFARALYDFVPENPEMEVALKKGDLMAILSK   45 (80)
T ss_dssp             GCEEEEESSCBCCSSTTTBCCBCTTCEEEEEEE
T ss_pred             cCEEEEECccCCCCCCCCEecCCCCCEEEEEEC
Confidence            34678999999999999 999999999988554

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.08  E-value=0.018  Score=41.25  Aligned_cols=29  Identities=14%  Similarity=0.280  Sum_probs=26.0

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      .+.++++|.++.+.||+|..||.|.|-+-
T Consensus         9 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   37 (68)
T 1x2p_A            9 EFVAIADYAATDETQLSFLRGEKILILRQ   37 (68)
T ss_dssp             EEEESSCCCCSSTTBCCCCTTCEEEEEEC
T ss_pred             EEEECceECCCCcCCcCCCCCCEEEEEEc
Confidence            46799999999999999999999988654

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A

Probab=95.06  E-value=0.015  Score=40.78  Aligned_cols=29  Identities=28%  Similarity=0.453  Sum_probs=25.8

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      .+.++++|+++.+.||+|..||.|.|-.-
T Consensus         9 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   37 (65)
T 3u23_A            9 QCKVLFEYIPQNEDELELKVGDIIDINEE   37 (65)
T ss_dssp             EEEECSCBCCSSTTBCCBCTTCEEEEEEE
T ss_pred             EEEEeeeeCCCCcCCcCCCCCCEEEEEEe
Confidence            47889999999999999999999987653

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.06  E-value=0.014  Score=42.04  Aligned_cols=29  Identities=10%  Similarity=0.197  Sum_probs=25.9

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      .+.++++|.++.+.||+|..||.|.|-+-
T Consensus         9 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   37 (68)
T 2dl4_A            9 TYVALYKFVPQENEDLEMRPGDIITLLED   37 (68)
T ss_dssp             EEEESSCCCCSSTTBCCCCTTCEEEEEEC
T ss_pred             EEEEeeeECCCCcCCcCCCCCCEEEEEEe
Confidence            46799999999999999999999988653

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=95.06  E-value=0.011  Score=42.69  Aligned_cols=29  Identities=21%  Similarity=0.208  Sum_probs=26.1

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      ..+.++++|.++.+.||+|..||.|.| .-
T Consensus        11 ~~~~alydy~~~~~~eLs~~~Gd~i~v-~~   39 (72)
T 2kgt_A           11 PKYVGLWDFKSRTDEELSFRAGDVFHV-AR   39 (72)
T ss_dssp             CEEECCTTCBCSSTTSCBCCTTCCEEE-EE
T ss_pred             cEEEEcccCCCCCcCCcCCCCCCEEEE-ee
Confidence            357899999999999999999999999 53

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens}

Probab=95.06  E-value=0.011  Score=42.43  Aligned_cols=29  Identities=10%  Similarity=0.265  Sum_probs=25.8

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      ..+.++++|.++.+.||+|..||.|.|-+
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~   36 (70)
T 2ecz_A            8 GEAIAKFNFNGDTQVEMSFRKGERITLLR   36 (70)
T ss_dssp             BCEEESSCCCCCSTTBCCCCTTCBCEEEE
T ss_pred             CEEEECccCCCCCcCCcCCCCCCEEEEEE
Confidence            44789999999999999999999988754

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.05  E-value=0.013  Score=42.73  Aligned_cols=29  Identities=24%  Similarity=0.203  Sum_probs=26.0

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      .+.++++|.++.+.||+|..||.|.|-+-
T Consensus         9 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   37 (73)
T 2dm1_A            9 TAVARYNFAARDMRELSLREGDVVRIYSR   37 (73)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEECCBS
T ss_pred             EEEECccCCcCCCCcCCCCCCCEEEEEEe
Confidence            47899999999999999999999988543

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}

Probab=95.05  E-value=0.014  Score=42.63  Aligned_cols=29  Identities=17%  Similarity=0.266  Sum_probs=25.7

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      .+.++++|+++.++||||..||.|.|-+-
T Consensus         5 ~~~Alydy~~~~~~eLsf~~Gd~i~v~~~   33 (68)
T 2ew3_A            5 CCRGLYDFEPENQGELGFKEGDIITLTNQ   33 (68)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEE
T ss_pred             EEEEeeeECCCCCCccCCCCCCEEEEEEe
Confidence            36789999999999999999999988653

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.04  E-value=0.02  Score=42.25  Aligned_cols=30  Identities=33%  Similarity=0.485  Sum_probs=26.9

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      .++.++++|+++.+.||+|..||.|.|-+-
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   37 (79)
T 2yun_A            8 RLCKALYSFQARQDDELNLEKGDIVIIHEK   37 (79)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEEC
T ss_pred             CEEEECccCCcCCCCCcCCCCCCEEEEEEc
Confidence            457899999999999999999999998654

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus}

Probab=95.03  E-value=0.015  Score=41.64  Aligned_cols=29  Identities=28%  Similarity=0.307  Sum_probs=25.9

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      ++.++++|.++.+.||+|..||.|.|-+-
T Consensus         9 ~~~al~~y~~~~~~eLs~~~Gd~i~v~~~   37 (70)
T 2cuc_A            9 MFVALHTYSAHRPEELDLQKGEGIRVLGK   37 (70)
T ss_dssp             CEECCSCBCCCSTTBCCBCTTCEEEEEEE
T ss_pred             EEEECeeECcCCCCcCCCCCCCEEEEEEe
Confidence            46899999999999999999999988654

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens}

Probab=95.02  E-value=0.011  Score=43.05  Aligned_cols=28  Identities=29%  Similarity=0.491  Sum_probs=25.2

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      .+.++++|.++.++||||..||.|.|-+
T Consensus         3 ~~~Alydy~~~~~~eLs~~~Gd~i~v~~   30 (65)
T 2fei_A            3 QCKVLFEYIPQNEDELELKVGDIIDINE   30 (65)
T ss_dssp             EEECSSCCCCCSTTBCCCCTTCEEECCC
T ss_pred             EEEECccCCcCCcCccCCCCCCEEEEEE
Confidence            4689999999999999999999998754

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} SCOP: b.34.2.1 PDB: 3h0i_A 3h0f_A*

Probab=95.02  E-value=0.016  Score=41.82  Aligned_cols=29  Identities=17%  Similarity=0.232  Sum_probs=25.3

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      .++.++++|.++.+.||+|..||.|.|-.
T Consensus        16 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~   44 (73)
T 3h0h_A           16 TLFVALYDYEAITEDDLSFHKGEKFQILN   44 (73)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEE
T ss_pred             EEEEECccCCCCCCCcceEeCCCEEEEEE
Confidence            34678999999999999999999997754

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A

Probab=95.01  E-value=0.013  Score=42.20  Aligned_cols=29  Identities=24%  Similarity=0.398  Sum_probs=26.0

Q ss_pred             eEEecccCCCC--CCceeeeeeCCEEEEEee
Q 018995          308 LGEVVHPYQAE--SDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       308 laev~hpF~ae--segELsLsvGDyVVVRqV  336 (348)
                      .+.++++|.++  .+.||+|..||.|.|-+-
T Consensus         3 ~~~al~dy~~~~~~~~eLsf~~Gd~i~v~~~   33 (67)
T 2bzy_A            3 FAKAIQKRVPCAYDKTALALEVGDIVKVTRM   33 (67)
T ss_dssp             EEEECSCBCSEEECTTBCCBCTTCEEEEEEE
T ss_pred             EEEEeeeECCCCCCCCccccCCCCEEEEEEe
Confidence            57899999999  999999999999988654

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1

Probab=95.01  E-value=0.015  Score=42.01  Aligned_cols=28  Identities=11%  Similarity=0.201  Sum_probs=25.7

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      .+.++++|+++.++||+|..||.|.|-.
T Consensus        13 ~~~alydy~~~~~~eLs~~~Gd~i~v~~   40 (71)
T 1csk_A           13 ECIAKYNFHGTAEQDLPFCKGDVLTIVA   40 (71)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEE
T ss_pred             EEEEceeECcCCCCcCCCCCCCEEEEeE
Confidence            4789999999999999999999998855

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.98  E-value=0.015  Score=44.40  Aligned_cols=30  Identities=30%  Similarity=0.525  Sum_probs=26.8

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      ..+.++|+|.++.+.||+|..||.|.|-.-
T Consensus        17 ~~~~Alydy~~~~~~eLs~~~Gd~i~v~~~   46 (94)
T 2e5k_A           17 ETLQVIYPYTPQNDDELELVPGDFIFMSPM   46 (94)
T ss_dssp             EEEEECSCBCCSSSSBCCBCTTCEEEECGG
T ss_pred             eEEEECCcCCCCCCCCcCCCCCCEEEEEEC
Confidence            567899999999999999999999998543

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}

Probab=94.97  E-value=0.013  Score=43.81  Aligned_cols=30  Identities=10%  Similarity=0.163  Sum_probs=27.1

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      ..+.++++|.++.+.||+|..||.|.|-+-
T Consensus        11 ~~~~alydy~~~~~~eLsf~~Gd~i~v~~~   40 (80)
T 2i0n_A           11 KYARALKDYNVSDTSLLPFKRNDIITITFK   40 (80)
T ss_dssp             CEEEESSCBCCCSSSSCCBCSSEEEEEEEE
T ss_pred             eEEEECCCCCcCCCCCcCCCCCCEEEEEEe
Confidence            567899999999999999999999998664

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.97  E-value=0.022  Score=41.04  Aligned_cols=29  Identities=28%  Similarity=0.272  Sum_probs=25.8

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      -...++++|.++.+.||+|..||.|.|-+
T Consensus         9 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~   37 (71)
T 2dnu_A            9 EKYVTVQPYTSQSKDEIGFEKGVTVEVIR   37 (71)
T ss_dssp             EEEECSSCBCCSSTTBCCBCTTCEEEECC
T ss_pred             CEEEECCccCCCCCCCCcCCCCCEEEEeE
Confidence            34689999999999999999999998854

>2m0y_A Dedicator of cytokinesis protein 1; apoptosis; NMR {Mus musculus}

Probab=94.97  E-value=0.011  Score=42.91  Aligned_cols=29  Identities=31%  Similarity=0.458  Sum_probs=25.6

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      ++.++++|.++.+.||+|..||.|.|-.-
T Consensus        13 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   41 (74)
T 2m0y_A           13 YGVAFYNYDARGADELSLQIGDTVHILET   41 (74)
T ss_dssp             CEEECSEECCCSSSBCCEETTEEEEEEEB
T ss_pred             EEEEceeeCCCCcCcccCCCCCEEEEEEc
Confidence            46789999999999999999999988654

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}

Probab=94.96  E-value=0.016  Score=42.95  Aligned_cols=28  Identities=29%  Similarity=0.418  Sum_probs=25.4

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      .+.++++|.++.+.||+|..||.|.|-+
T Consensus         7 ~~~Alydy~a~~~~eLs~~~Gd~i~v~~   34 (73)
T 2lcs_A            7 RAVALYDFEPENDNELRLAEGDIVFISY   34 (73)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEE
T ss_pred             EEEECccCCCCCCCccCCcCCCEEEEEE
Confidence            4789999999999999999999998854

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.95  E-value=0.014  Score=43.91  Aligned_cols=30  Identities=17%  Similarity=0.128  Sum_probs=26.9

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      .++.++++|+++.+.||+|..||.|.|-+-
T Consensus        20 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~   49 (85)
T 2yuq_A           20 TVVIALYDYQTNDPQELALRRNEEYCLLDS   49 (85)
T ss_dssp             CEEEESSCCCCSCSSBCCCCBTEEEEEEEC
T ss_pred             eEEEECcCCCCCCCCcCCCCCCCEEEEEEe
Confidence            468999999999999999999999988654

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}

Probab=94.94  E-value=0.016  Score=42.32  Aligned_cols=30  Identities=20%  Similarity=0.302  Sum_probs=26.4

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      -.+.++++|+++.+.||+|..||.|.|-+-
T Consensus        14 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   43 (73)
T 3c0c_A           14 PSCKALYDFEPENDGELGFREGDLITLTNQ   43 (73)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEE
T ss_pred             eEEEECccCCCCCCCCccCcCCCEEEEEEe
Confidence            346899999999999999999999988653

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens}

Probab=94.94  E-value=0.016  Score=41.51  Aligned_cols=29  Identities=28%  Similarity=0.216  Sum_probs=25.7

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      .+.++++|.++.++||+|..||.|.|-.-
T Consensus         8 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   36 (69)
T 4esr_A            8 TVVALYDYTANRSDELTIHRGDIIRVFFK   36 (69)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEE
T ss_pred             EEEECccCCCCCcCcCCCCCCCEEEEEEe
Confidence            56789999999999999999999987653

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A

Probab=94.93  E-value=0.026  Score=41.62  Aligned_cols=30  Identities=17%  Similarity=0.154  Sum_probs=26.1

Q ss_pred             eeEEecccCCCC--CCceeeeeeCCEEEEEee
Q 018995          307 FLGEVVHPYQAE--SDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       307 Flaev~hpF~ae--segELsLsvGDyVVVRqV  336 (348)
                      -.+.++++|.+.  .+.||+|..||.|.|-.-
T Consensus        10 ~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~   41 (73)
T 2ebp_A           10 GRARVHTDFTPSPYDTDSLKLKKGDIIDIISK   41 (73)
T ss_dssp             EEEEECSCBCCCTTCCSBCCBCSSCEEEEEEC
T ss_pred             eEEEEeeccCCCCCCCCccCCCCCCEEEEEEe
Confidence            468999999975  999999999999988654

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A

Probab=94.93  E-value=0.017  Score=42.56  Aligned_cols=29  Identities=17%  Similarity=0.215  Sum_probs=26.1

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      .++.++++|.++.++|||+..||.|.|=.
T Consensus         5 ~~~~Alydy~a~~~~ELsf~~Gd~i~vl~   33 (67)
T 2b86_A            5 VIVIAKWDYTAQQDQELDIKKNERLWLLD   33 (67)
T ss_dssp             EEEEESSCBCCSSTTSCCBCTTCEEEEEE
T ss_pred             eEEEEeeeECCCCCCccccCCCCEEEEEe
Confidence            46789999999999999999999998854

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens}

Probab=94.91  E-value=0.014  Score=42.57  Aligned_cols=29  Identities=14%  Similarity=0.180  Sum_probs=26.3

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      .++.++++|.++.+.||+|..||.|.|-+
T Consensus         8 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~   36 (72)
T 2jw4_A            8 VVVVAKFDYVAQQEQELDIKKNERLWLLD   36 (72)
T ss_dssp             EEEECSSCCCCSSTTSCCCCTTCEEEEEE
T ss_pred             eEEEECcCCCcCCCCcccCCCCCEEEEEE
Confidence            36789999999999999999999998865

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1

Probab=94.90  E-value=0.017  Score=41.78  Aligned_cols=30  Identities=13%  Similarity=0.301  Sum_probs=26.5

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      ..+.++++|+++.++|||+..||.|.|-.-
T Consensus         4 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~   33 (65)
T 1b07_A            4 EYVRALFDFNGNDEEDLPFKKGDILRIRDK   33 (65)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEC
T ss_pred             eEEEECCcCCCCCCCccCCcCCCEEEEEEe
Confidence            357899999999999999999999988653

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} SCOP: b.34.2.0 PDB: 2d1x_A

Probab=94.90  E-value=0.018  Score=40.57  Aligned_cols=30  Identities=20%  Similarity=0.286  Sum_probs=26.2

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      ..+.++++|.++.+.||+|..||.|.|-.-
T Consensus        10 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   39 (65)
T 3ulr_B           10 ITAIALYDYQAAGDDEISFDPDDIITNIEM   39 (65)
T ss_dssp             SCEEECSCBCCCSTTBCCBCTTCEEEEEEC
T ss_pred             eEEEEEeeECCCCcCEeeEecCCEEEEEEe
Confidence            347899999999999999999999977543

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A

Probab=94.86  E-value=0.019  Score=41.08  Aligned_cols=30  Identities=17%  Similarity=0.097  Sum_probs=26.3

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      -.+.++++|.++.+.||+|..||.|.|-+-
T Consensus         9 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   38 (67)
T 1aww_A            9 KKVVALYDYMPMNANDLQLRKGDEYFILEE   38 (67)
T ss_dssp             CEEEBSSCCCCSSSSSCCCCSSCEEECCCC
T ss_pred             eEEEECccCCCCCCCCccCCCCCEEEEEEc
Confidence            357899999999999999999999988543

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens}

Probab=94.83  E-value=0.021  Score=40.80  Aligned_cols=29  Identities=17%  Similarity=0.240  Sum_probs=25.5

Q ss_pred             eeEEecccCCC-CCCceeeeeeCCEEEEEe
Q 018995          307 FLGEVVHPYQA-ESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       307 Flaev~hpF~a-esegELsLsvGDyVVVRq  335 (348)
                      -.+.++++|.| +.+.||+|..||.|.|-+
T Consensus         7 ~~~~al~dy~a~~~~~eLs~~~Gd~i~v~~   36 (67)
T 2kxc_A            7 QKVKTIFPHTAGSNKTLLSFAQGDVITLLI   36 (67)
T ss_dssp             CEEEESSCBCCSSCSSBCCBCTTCEEEESS
T ss_pred             EEEEEeecCCCCCCCCCCcCCCCCEEEEeE
Confidence            35789999997 999999999999998854

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}

Probab=94.81  E-value=0.016  Score=41.39  Aligned_cols=29  Identities=21%  Similarity=0.177  Sum_probs=25.4

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      ..+.++++|.++.+.||+|..||.|.|-.
T Consensus        11 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~   39 (68)
T 1s1n_A           11 EEYIAVGDFTAQQVGDLTFKKGEILLVIE   39 (68)
T ss_dssp             EEEEECSCBCCSSSSCCCBCSSEEEEECS
T ss_pred             CEEEEcccCCCCCCCcCCCCCCCEEEEEE
Confidence            34569999999999999999999998844

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A

Probab=94.80  E-value=0.014  Score=42.56  Aligned_cols=28  Identities=18%  Similarity=0.355  Sum_probs=25.3

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      .+.++++|+++.+.||+|..||.|.|-+
T Consensus         9 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~   36 (73)
T 2dbm_A            9 CCRALYDFEPENEGELGFKEGDIITLTN   36 (73)
T ss_dssp             EEEESSCBCCCSTTCCCBCTTCEEECCB
T ss_pred             EEEEccccCCCCCCCccCCCCCEEEEEE
Confidence            4689999999999999999999998854

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} SCOP: b.34.2.1

Probab=94.78  E-value=0.019  Score=41.48  Aligned_cols=29  Identities=28%  Similarity=0.335  Sum_probs=25.7

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      .+.++++|.++.+.||+|..||.|.|-.-
T Consensus         7 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   35 (73)
T 3thk_A            7 LVLALYDYQEKSPREVTMKKGDILTLLNS   35 (73)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEEC
T ss_pred             EEEECcCCCcCCCCccCCCCCCEEEEEEC
Confidence            46789999999999999999999987553

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.74  E-value=0.039  Score=41.80  Aligned_cols=31  Identities=26%  Similarity=0.366  Sum_probs=26.4

Q ss_pred             eeeEEecccCC--CCCCceeeeeeCCEEEEEee
Q 018995          306 YFLGEVVHPYQ--AESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       306 yFlaev~hpF~--aesegELsLsvGDyVVVRqV  336 (348)
                      ...+.++++|.  ++.+.||+|..||.|.|-.-
T Consensus        16 ~~~~~alydy~~~a~~~~eLsf~~Gd~i~v~~~   48 (88)
T 2dbk_A           16 PVFAKAIQKRVPCAYDKTALALEVGDIVKVTRM   48 (88)
T ss_dssp             CEEEEECSCBCCCTTCSSBCCBCTTCEEEEEEE
T ss_pred             CEEEEEcccccCCCCCCCcccCCCCCEEEEEEe
Confidence            45789999999  55999999999999988543

>4glm_A Dynamin-binding protein; SH3 domain, DNMBP, structural genomics, structural genomics consortium, SGC, SRC homology 3 domains, cell junctions; 1.90A {Homo sapiens}

Probab=94.73  E-value=0.019  Score=41.06  Aligned_cols=30  Identities=27%  Similarity=0.335  Sum_probs=26.5

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      ..+.++++|.++.+.||+|..||.|.|-+-
T Consensus        14 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   43 (72)
T 4glm_A           14 TYGVALYRFQALEPNELDFEVGDKIRILAT   43 (72)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEEE
T ss_pred             eEEEECccCCCCCCCcCCCCCCCEEEEEEc
Confidence            457899999999999999999999987653

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.68  E-value=0.028  Score=41.44  Aligned_cols=28  Identities=25%  Similarity=0.269  Sum_probs=25.2

Q ss_pred             eeEEecccCCCCC-------CceeeeeeCCEEEEE
Q 018995          307 FLGEVVHPYQAES-------DVELTLSVGDYVVVR  334 (348)
Q Consensus       307 Flaev~hpF~aes-------egELsLsvGDyVVVR  334 (348)
                      ..+.++++|+++.       +.||+|..||.|.|-
T Consensus         8 ~~~~Alydy~~~~~~~~~~~~~eLsf~~Gd~i~v~   42 (75)
T 2ege_A            8 KIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVY   42 (75)
T ss_dssp             EEEEESSCBCTTTTCCCSSSCCBCCBCTTCEEEEE
T ss_pred             cEEEECCCCCCCccccCCCCCCcceECCCCEEEEe
Confidence            4578999999999       999999999999775

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A

Probab=94.62  E-value=0.018  Score=43.14  Aligned_cols=28  Identities=21%  Similarity=0.368  Sum_probs=25.5

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      ++.++++|.++.++||+|..||.|.|-+
T Consensus         7 ~~~Alydy~~~~~~eLs~~~Gd~i~vl~   34 (79)
T 3cqt_A            7 LFEALYDYEARTEDDLSFHKGEKFQILN   34 (79)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEE
T ss_pred             EEEECccCCCCCcCcCCCCCCCEEEEEE
Confidence            4689999999999999999999999854

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=94.59  E-value=0.031  Score=40.44  Aligned_cols=29  Identities=21%  Similarity=0.306  Sum_probs=25.8

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      .+.++++|.++.+.||+|..||.|.|-+.
T Consensus        10 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   38 (69)
T 1uhf_A           10 EYIALYPYSSVEPGDLTFTEGEEILVTQK   38 (69)
T ss_dssp             EEECSSCBCCSSSSBCCBCTTCEEEECEE
T ss_pred             EEEEeeeECCCCcCccCCCCCCEEEEEEe
Confidence            46899999999999999999999988553

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=94.52  E-value=0.019  Score=43.91  Aligned_cols=29  Identities=21%  Similarity=0.355  Sum_probs=25.8

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      -.+.++++|+++.+.||+|..||.|.|-.
T Consensus         6 ~~~~Alydy~a~~~~eLsf~~Gd~i~v~~   34 (93)
T 1uff_A            6 SGYRALYPFEARNHDEMSFNSGDIIQVDE   34 (93)
T ss_dssp             CCEEESSCBCCCSSSCCCBCTTCEEEECS
T ss_pred             EEEEECccCCCCCCCCcCCCCCCEEEEeE
Confidence            35689999999999999999999998854

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A

Probab=94.49  E-value=0.024  Score=40.69  Aligned_cols=28  Identities=29%  Similarity=0.352  Sum_probs=24.8

Q ss_pred             EEecccCC-CCCCceeeeeeCCEEEEEee
Q 018995          309 GEVVHPYQ-AESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       309 aev~hpF~-aesegELsLsvGDyVVVRqV  336 (348)
                      +.++++|+ ++.+.||+|..||.|.|-+-
T Consensus         5 ~~alydy~~~~~~~eLs~~~Gd~i~v~~~   33 (69)
T 1ruw_A            5 FEAAYDFPGSGSSSELPLKKGDIVFISRD   33 (69)
T ss_dssp             EEESSCBCCCSCTTBCCBCTTCEEEEEEE
T ss_pred             EEEccccCCCCCCCcccCCCCCEEEEEEe
Confidence            57899996 99999999999999988553

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A

Probab=94.48  E-value=0.023  Score=40.53  Aligned_cols=28  Identities=21%  Similarity=0.400  Sum_probs=25.3

Q ss_pred             eEEecccCCC-CCCceeeeeeCCEEEEEe
Q 018995          308 LGEVVHPYQA-ESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       308 laev~hpF~a-esegELsLsvGDyVVVRq  335 (348)
                      ...++++|.+ +.+.||+|..||.|.|-+
T Consensus         7 ~~~alydy~~~~~~~eLs~~~Gd~i~v~~   35 (65)
T 2j05_A            7 RVRAILPYTKVPDTDEISFLKGDMFIVHN   35 (65)
T ss_dssp             EEEESSCBCCCTTSSBCCBCTTCEEEEEE
T ss_pred             EEEEccccCCCCCCCcCcCCCCCEEEEeE
Confidence            4789999999 999999999999998754

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=94.47  E-value=0.023  Score=44.01  Aligned_cols=30  Identities=40%  Similarity=0.388  Sum_probs=26.7

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      -.+.++++|.++.++||+|..||.|.|-+-
T Consensus        30 ~~~~Alydy~a~~~~ELsf~~GD~I~Vl~~   59 (89)
T 2rf0_A           30 PVWTAVFDYEAAGDEELTLRRGDRVQVLSQ   59 (89)
T ss_dssp             CEEEECSCBCCSSTTBCCBCTTCEEEEEEC
T ss_pred             cEEEECCccCCCCCCccccCCCCEEEEEec
Confidence            356899999999999999999999988664

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=94.38  E-value=0.058  Score=41.47  Aligned_cols=32  Identities=22%  Similarity=0.211  Sum_probs=28.4

Q ss_pred             ceeeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       305 ~yFlaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      ....+.++++|.++.+.||+|..||.|.|-+-
T Consensus        33 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~   64 (98)
T 1udl_A           33 PVCQVIAMYDYAANNEDELSFSKGQLINVMNK   64 (98)
T ss_dssp             CSEEEEESSCCCCSSTTSCCCCTTCEEEECBC
T ss_pred             CceEEEECCCCCCCCCCccCCcCCCEEEEEEe
Confidence            35778999999999999999999999998654

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens}

Probab=94.36  E-value=0.026  Score=42.64  Aligned_cols=29  Identities=24%  Similarity=0.256  Sum_probs=25.7

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      ++.++++|.++.++||+|..||.|.|-.-
T Consensus         5 ~~~Alydy~~~~~~eLs~~~Gd~i~v~~~   33 (90)
T 3reb_B            5 IVVALYDYVSWSPDDLSFQKGDQMVVLEE   33 (90)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEEC
T ss_pred             EEEECCccCcCCcCcCCCCCCCEEEEEEe
Confidence            56889999999999999999999987553

>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A

Probab=94.35  E-value=0.028  Score=45.28  Aligned_cols=31  Identities=23%  Similarity=0.162  Sum_probs=27.6

Q ss_pred             ceeeEEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       305 ~yFlaev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      ..+.+.++++|.|+.+.||||..||.|.|-.
T Consensus        21 ~~~~~~Alydy~a~~~~ELsf~~GDiI~Vl~   51 (108)
T 1i1j_A           21 PISMAVALQDYMAPDCRFLTIHRGQVVYVFS   51 (108)
T ss_dssp             CSEEEEESSCBCCSSTTBCCBCTTCEEEEEE
T ss_pred             eeeEEEECCccCCCCCCccccCCCCEEEEEE
Confidence            4577999999999999999999999997743

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens}

Probab=94.34  E-value=0.011  Score=45.07  Aligned_cols=31  Identities=19%  Similarity=0.344  Sum_probs=27.1

Q ss_pred             ceeeEEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       305 ~yFlaev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      ....+.++++|.++.++||||..||.|.|-+
T Consensus        17 ~~~~~~Alydy~a~~~~eLsf~~Gd~I~Vl~   47 (79)
T 1z9q_A           17 AAPRAEALFDFTGNSKLELNFKAGDVIFLLS   47 (79)
T ss_dssp             SCCCEEESSCCCCSSTTBCCCCTTCCBCCCE
T ss_pred             CceEEEEcCccCCCCCCcccccCCCEEEEeE
Confidence            4466899999999999999999999988744

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.29  E-value=0.027  Score=41.70  Aligned_cols=30  Identities=27%  Similarity=0.268  Sum_probs=26.6

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      ..+.++++|.++.+.||+|..||.|.|-+-
T Consensus        14 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~   43 (78)
T 2dl5_A           14 LTCKVVYSYKASQPDELTIEEHEVLEVIED   43 (78)
T ss_dssp             EEEEECSCBCCCSTTBCCBCSSEEEEEEEC
T ss_pred             cEEEEceeECCCCCCCCCCCCCCEEEEEec
Confidence            458999999999999999999999988554

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.28  E-value=0.04  Score=41.05  Aligned_cols=29  Identities=24%  Similarity=0.210  Sum_probs=25.5

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      +..++++|.++.+.||+|..||.|.|-+-
T Consensus        10 ~~~al~dy~~~~~~eLs~~~Gd~i~vl~~   38 (80)
T 2ekh_A           10 SYMTCSAYQKVQDSEISFPAGVEVQVLEK   38 (80)
T ss_dssp             EEEECSCBCCSSTTSCCBCTTCEEEEEEE
T ss_pred             EEEECCCCCCCCCCccCcCCCCEEEEEEe
Confidence            45789999999999999999999987543

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae}

Probab=94.26  E-value=0.032  Score=40.27  Aligned_cols=30  Identities=20%  Similarity=0.472  Sum_probs=25.8

Q ss_pred             eeeEEecccCCCCCCc--eeeeeeCCEEEEEe
Q 018995          306 YFLGEVVHPYQAESDV--ELTLSVGDYVVVRK  335 (348)
Q Consensus       306 yFlaev~hpF~aeseg--ELsLsvGDyVVVRq  335 (348)
                      -+.+.++++|.++.+.  ||||..||.|.|-+
T Consensus         5 ~~~~~alydy~~~~~~~~eLsf~~Gd~i~v~~   36 (70)
T 2vkn_A            5 IYKAKALYPYDADDDDAYEISFEQNEILQVSD   36 (70)
T ss_dssp             EEEEEESSCBCCCSSSTTBCCBCTTCEEEEEC
T ss_pred             CEEEEECccCCCCCCCCCcccCCCCCEEEEEE
Confidence            3678999999999764  99999999998855

>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A

Probab=94.18  E-value=3.1  Score=37.58  Aligned_cols=201  Identities=12%  Similarity=0.124  Sum_probs=107.7

Q ss_pred             HHHHHHhhhhhchhhhhhhhhccceeeeecceeehhhhhhhhhhhhccC---CCCCCCchHHHHHHHHhHHHHHHHHHHH
Q 018995           49 RLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGS---DNTCTSGNTLSKAALSYGRARAQMEKER  125 (348)
Q Consensus        49 ~LekLY~STRaaKhFQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~---en~~~~~~~LarAa~~yg~a~~~mEkEr  125 (348)
                      .++.|+.-+..|..+=+||..=+.==   ..=--|.+.+|..=|+||..   .++ .. .+|..|-..+-..-..+=+-+
T Consensus        21 g~~~l~~r~~~g~~~~~el~~f~keR---a~iE~eYak~L~kLakk~~~~~~~~~-~~-gtl~~aw~~~~~e~e~~a~~H   95 (337)
T 2x3v_A           21 NYKRTVKRIDDGHRLCNDLMSCVQER---AKIEKAYAQQLTDWAKRWRQLIEKGP-QY-GSLERAWGAMMTEADKVSELH   95 (337)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHSS-CC-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhccCCC-CC-chHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555543211000   00013567778888888864   122 23 368887777767777777788


Q ss_pred             hHHHHHHhhhhhhHHHHhhc--------C-----CCc---------------hhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 018995          126 GNLLKALGTQVAEPLRAMVL--------G-----APL---------------DDARHLAQRYDRMRQEAEAQAIEVSKRQ  177 (348)
Q Consensus       126 e~l~r~L~~QV~ePLRaMv~--------G-----aPL---------------EDARhLaqRYdRmRQEaE~Qa~eV~rRq  177 (348)
                      ..|-..|.++|.+||+....        |     --+               .+..-....|+..++|+|.--..+.+  
T Consensus        96 ~~~a~~L~~~v~~~l~~~~~e~~~k~~~~~~ke~K~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~c~e~e~a~~~~~~--  173 (337)
T 2x3v_A           96 QEVKNSLLNEDLEKVKNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEERLAMTREMN--  173 (337)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHCCBCSSCSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhc--
Confidence            88889999999999998653        1     001               11233456788888876643222222  


Q ss_pred             hhhcCCCCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHH--------------HHHHHHhhHHHHHHHHHHHHhHHHH
Q 018995          178 AKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAM--------------AAVESQQQRLTLQRLIAMVEAERTY  243 (348)
Q Consensus       178 ~k~res~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM--------------~aVEaQQQrlTlQRLiaMVeAER~Y  243 (348)
                      ++. +++.++....|   ++.|+.+++..+...-.+=..++              ..+=.+-|.+-.+||..|-+.=..|
T Consensus       174 ~~~-~~~~s~k~~eK---~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~~~Q~le~~Rl~~lk~~l~~~  249 (337)
T 2x3v_A          174 SKT-EQSVTPEQQKK---LVDKVDKCRQDVQKTQEKYEKVLEDVGKTTPQYMEGMEQVFEQCQQFEEKRLVFLKEVLLDI  249 (337)
T ss_dssp             HHS-SSCCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccc-CcccCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            221 23335554444   44455555554444443333333              3333445556666777666666666


Q ss_pred             HHHHH----HHHHHHHHHHHh
Q 018995          244 HQRVL----QILDQLEGEMLS  260 (348)
Q Consensus       244 Hqrv~----~ILd~L~~eMvs  260 (348)
                      +..+-    .++++.+.+|..
T Consensus       250 ~~~~~~~~~~~~~~~~~~l~~  270 (337)
T 2x3v_A          250 KRHLNLAENSSYMHVYRELEQ  270 (337)
T ss_dssp             HHHHCGGGSTHHHHHHHHHHH
T ss_pred             HHHHhhhhhhhHHHHHHHHHH
Confidence            65431    245555554433

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.17  E-value=0.037  Score=40.77  Aligned_cols=30  Identities=23%  Similarity=0.265  Sum_probs=26.5

Q ss_pred             eeEEecccCCCCC-------CceeeeeeCCEEEEEee
Q 018995          307 FLGEVVHPYQAES-------DVELTLSVGDYVVVRKV  336 (348)
Q Consensus       307 Flaev~hpF~aes-------egELsLsvGDyVVVRqV  336 (348)
                      ..+.++++|+++.       +.||+|..||.|.|-+-
T Consensus         8 ~~~~Al~dy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~   44 (76)
T 2csi_A            8 RRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGE   44 (76)
T ss_dssp             EEEECSSCCCTTTTSCSSSTTTSCCCCTTCEEEEESS
T ss_pred             cEEEEcccCCCCCcccCCCCCCcccCCCCCEEEEeEe
Confidence            4578999999999       99999999999998653

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.16  E-value=0.029  Score=41.88  Aligned_cols=28  Identities=14%  Similarity=0.125  Sum_probs=25.3

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      +..++|+|+++.+.||+|..||.|.|=+
T Consensus        19 ~~~Alydy~a~~~~eLs~~~Gd~i~v~~   46 (79)
T 2cud_A           19 FLAVLSDYPSPDISPPIFRRGEKLRVIS   46 (79)
T ss_dssp             EEEESSCSSCTTTSCCSSCTTCEEEEEE
T ss_pred             EEEEccCCCCCCCCcCCCCCCCEEEEEe
Confidence            5778999999999999999999998854

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=94.07  E-value=0.057  Score=41.70  Aligned_cols=30  Identities=27%  Similarity=0.366  Sum_probs=26.9

Q ss_pred             ceeeEEecccCCCCC------CceeeeeeCCEEEEE
Q 018995          305 GYFLGEVVHPYQAES------DVELTLSVGDYVVVR  334 (348)
Q Consensus       305 ~yFlaev~hpF~aes------egELsLsvGDyVVVR  334 (348)
                      ...++.++++|+++.      +.||+|..||.|.|-
T Consensus        16 ~~~~~~Alydy~~~~~~~~~~~~eLsf~~Gd~i~v~   51 (96)
T 1wie_A           16 KVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVY   51 (96)
T ss_dssp             CEEEEEESSCCCGGGSSCSCTTTBCCCCTTCEEEEE
T ss_pred             CCcEEEECCccCCCcccCCCCCCeeeECCCCEEEEe
Confidence            456788999999999      999999999999886

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} SCOP: b.34.2.1

Probab=94.04  E-value=0.029  Score=40.08  Aligned_cols=27  Identities=15%  Similarity=0.245  Sum_probs=23.9

Q ss_pred             eEEecccCCCCCCce-eeeeeCCEEEEE
Q 018995          308 LGEVVHPYQAESDVE-LTLSVGDYVVVR  334 (348)
Q Consensus       308 laev~hpF~aesegE-LsLsvGDyVVVR  334 (348)
                      .+.++++|.+..+.| |+|..||.|.|-
T Consensus         9 ~~~al~dy~~~~~~e~Lsf~~Gd~i~v~   36 (67)
T 3rnj_A            9 RVKAIFSHAAGDNSTLLSFKEGDLITLL   36 (67)
T ss_dssp             EEEESSCBCCCSCTTBCCBCTTCEEEEC
T ss_pred             EEEEccccCCCCCCCCccCCCCCEEEEe
Confidence            478999999998777 999999999875

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B

Probab=93.97  E-value=0.035  Score=44.92  Aligned_cols=31  Identities=35%  Similarity=0.400  Sum_probs=28.2

Q ss_pred             ceeeEEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       305 ~yFlaev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      ..+.+.++++|.++.+.||+|..||.|.|-.
T Consensus        43 ~~~~~~Alydy~a~~~dELsf~~GDiI~Vl~   73 (115)
T 1bb9_A           43 FMFKVQAQHDYTATDTDELQLKAGDVVLVIP   73 (115)
T ss_dssp             CCEEEEESSCBCCSSTTBCCBCTTCEEEEEC
T ss_pred             cceEEEECCccCCCCCCccCcCCCCEEEEee
Confidence            4577999999999999999999999998865

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D

Probab=93.97  E-value=0.017  Score=54.74  Aligned_cols=32  Identities=22%  Similarity=0.246  Sum_probs=28.5

Q ss_pred             ceeeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       305 ~yFlaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      ....+.++++|.++.++||++..||.|.|-..
T Consensus        29 ~~~~~~al~~~~~~~~~eL~~~~gd~i~v~~~   60 (466)
T 2pz1_A           29 SVVCAEALWDHVTMDDQELGFKAGDVIEVMDA   60 (466)
T ss_dssp             CCEEEEESSCBCCCCTTBCCBCTTCEEEEEEC
T ss_pred             CccEEEEccccCCCCCCcCCCCCCCEEEEEEe
Confidence            35788999999999999999999999988654

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic}

Probab=93.87  E-value=0.023  Score=41.45  Aligned_cols=27  Identities=26%  Similarity=0.449  Sum_probs=24.4

Q ss_pred             EEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          309 GEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       309 aev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      +.++++|.+ .++||||..||.|.|-+-
T Consensus         3 a~alydy~~-~~~eLs~~~Gd~i~v~~~   29 (73)
T 2kxd_A            3 APPLPPYSA-GGREVTMKKGDILTLLNS   29 (73)
T ss_dssp             CCCCCSSCC-CSCCCCBCTTCEEEEEEC
T ss_pred             EEEeeeeCC-CCCEeeEcCCCEEEEEEe
Confidence            689999999 899999999999988654

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A

Probab=93.83  E-value=0.071  Score=40.33  Aligned_cols=30  Identities=17%  Similarity=0.274  Sum_probs=26.8

Q ss_pred             eeEEecccCCCCCCc-eeeeeeCCEEEEEee
Q 018995          307 FLGEVVHPYQAESDV-ELTLSVGDYVVVRKV  336 (348)
Q Consensus       307 Flaev~hpF~aeseg-ELsLsvGDyVVVRqV  336 (348)
                      ..+.++++|.++.++ ||+|..||.|.|-.-
T Consensus        15 ~~~~alydy~~~~~~~eLsf~~Gd~i~v~~~   45 (92)
T 1jqq_A           15 EFARALYDFVPENPEMEVALKKGDLMAILSK   45 (92)
T ss_dssp             EEEEESSBBCCSSTTTBCCBCTTCEEEEEEE
T ss_pred             EEEEECccCCCCCCCCCcCCCCCCEEEEEEC
Confidence            568999999999999 999999999988554

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=93.77  E-value=0.13  Score=46.31  Aligned_cols=31  Identities=35%  Similarity=0.400  Sum_probs=28.5

Q ss_pred             ceeeEEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       305 ~yFlaev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      ..+.+.++|+|.++.++||+|..||.|.|-.
T Consensus       141 ~~~~~rALYdY~a~~~dELSf~~GDiI~Vl~  171 (213)
T 1mv3_A          141 FMFKVQAQHDYTATDTDELQLKAGDVVLVIP  171 (213)
T ss_dssp             CCEEEEESSCBCCCSTTCCCBCSSCEEEECC
T ss_pred             cceEEEECCCcCCCCCCcCCcCCCCEEEEee
Confidence            4678999999999999999999999999865

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.70  E-value=0.061  Score=39.61  Aligned_cols=28  Identities=11%  Similarity=0.089  Sum_probs=24.4

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      -.+.++++|+++ +.||+|..||.|.|=+
T Consensus        11 ~~~~alydy~~~-~~eLs~~~Gd~i~vl~   38 (75)
T 2egc_A           11 DVYVSIADYEGD-EETAGFQEGVSMEVLE   38 (75)
T ss_dssp             EEEEECSCBCCC-SSSCCBCTTCEEEECE
T ss_pred             eEEEECCCcCCC-CCcCCCCCCCEEEEEE
Confidence            346799999999 9999999999998744

>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A

Probab=93.63  E-value=3.8  Score=36.62  Aligned_cols=202  Identities=14%  Similarity=0.146  Sum_probs=110.4

Q ss_pred             HHHHHHhhhhhchhhhhhhhhccceeeeecceeehhhhhhhhhhhhccC---CCCCCCchHHHHHHHHhHHHHHHHHHHH
Q 018995           49 RLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGS---DNTCTSGNTLSKAALSYGRARAQMEKER  125 (348)
Q Consensus        49 ~LekLY~STRaaKhFQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~---en~~~~~~~LarAa~~yg~a~~~mEkEr  125 (348)
                      .++.|+.-+..|..+=+||..=+-==   ..=--|.+.+|..=|+||..   .++ ..| +|..|-..+-..-..+-+.+
T Consensus        30 g~~~l~~r~~~g~~~~~el~~f~keR---a~iE~eYak~L~kLakk~~~~~~~~~-e~g-tl~~aw~~i~~e~e~~a~~H  104 (312)
T 3abh_A           30 NYKRTVKRIDDGHRLCSDLMNCLHER---ARIEKAYAQQLTEWARRWRQLVEKGP-QYG-TVEKAWMAFMSEAERVSELH  104 (312)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHSS-CCH-HHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCC-CCC-hHHHHHHHHHHHHHHHHHHH
Confidence            56777777777777666664321000   00012567888888999853   222 234 78888777777777777888


Q ss_pred             hHHHHHHhhhhhhHHHHhhc--------CC-----Cchh---------------hhhHHHHHHHHHHHHHHHHHHHHHHh
Q 018995          126 GNLLKALGTQVAEPLRAMVL--------GA-----PLDD---------------ARHLAQRYDRMRQEAEAQAIEVSKRQ  177 (348)
Q Consensus       126 e~l~r~L~~QV~ePLRaMv~--------Ga-----PLED---------------ARhLaqRYdRmRQEaE~Qa~eV~rRq  177 (348)
                      ..|-..|.++|.+||+..+.        |.     .+++               ..-...+|+..++|+|.--....+. 
T Consensus       105 ~~~a~~L~~~v~~~l~~~~~~~~~k~~~~~~ke~k~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~e~e~a~~~~~~~-  183 (312)
T 3abh_A          105 LEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANS-  183 (312)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHCCBCTTSSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence            99999999999999997753        21     1111               1123345666666655432211111 


Q ss_pred             hhhcCCCCChhhhhhhHHHHHhHHHHHHHHHHhcHHHH--------------HHHHHHHHHhhHHHHHHHHHHHHhHHHH
Q 018995          178 AKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAA--------------AAMAAVESQQQRLTLQRLIAMVEAERTY  243 (348)
Q Consensus       178 ~k~res~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~--------------aAM~aVEaQQQrlTlQRLiaMVeAER~Y  243 (348)
                       + .+.+.++...-|+   +.|+..++..+...-.+=.              .-|..+=.+-|.+-.+||..|-+.=..|
T Consensus       184 -~-~d~~~~~k~~eK~---~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~~~Q~lee~Rl~~lk~~l~~~  258 (312)
T 3abh_A          184 -K-ADPSLNPEQLKKL---QDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEV  258 (312)
T ss_dssp             -H-TCTTCCSHHHHGG---GTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -c-cCCcCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             1 1233344444443   2333333333333222222              2344444456667777777776666666


Q ss_pred             HHHHH----HHHHHHHHHHHhh
Q 018995          244 HQRVL----QILDQLEGEMLSE  261 (348)
Q Consensus       244 Hqrv~----~ILd~L~~eMvsE  261 (348)
                      +..+-    ..+++.+.+|...
T Consensus       259 ~~~~~~~~~~~~~~~~~~l~~~  280 (312)
T 3abh_A          259 QKHLDLSNVAGYKAIYHDLEQS  280 (312)
T ss_dssp             HHHHCGGGSTTHHHHHHHHHHH
T ss_pred             HHHHhhhccchHHHHHHHHHHH
Confidence            66532    2455555555444

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 3ua7_A 3ua6_A 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A ...

Probab=93.51  E-value=0.044  Score=41.47  Aligned_cols=28  Identities=18%  Similarity=0.210  Sum_probs=24.9

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      .+.++++|.++.++||||..||.|.|-.
T Consensus         8 ~~~Alydy~a~~~~eLsf~~Gd~i~vl~   35 (84)
T 4ag1_C            8 LFVALYDYNATRWTDLSFHKGEKFQILE   35 (84)
T ss_dssp             EEEESSCBCCSBTTBCCBCTTCEEEEEE
T ss_pred             EEEEcccCCCCCCCcccccCCCEEEEEE
Confidence            5678999999999999999999997654

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.44  E-value=0.048  Score=40.84  Aligned_cols=28  Identities=18%  Similarity=0.106  Sum_probs=25.1

Q ss_pred             EEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          309 GEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       309 aev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      ..++++|+++.+.||+|..||.|.|-+-
T Consensus        20 ~~Alydy~~~~~~eLsf~~Gd~i~v~~~   47 (81)
T 1x6g_A           20 CITKCEHTRPKPGELAFRKGDVVTILEA   47 (81)
T ss_dssp             EEESSCBSSCCTTCCCBCTTCEEEEEEC
T ss_pred             EEECCCCCcCCCCCCCCCCCCEEEEEec
Confidence            5689999999999999999999988553

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens}

Probab=93.41  E-value=0.039  Score=42.97  Aligned_cols=30  Identities=33%  Similarity=0.381  Sum_probs=26.5

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      -.+.++++|.++.+.||+|..||.|.|-.-
T Consensus        19 ~~~~Alydy~a~~~~eLsf~~Gd~i~V~~~   48 (92)
T 2o2o_A           19 RRCQVAFSYLPQNDDELELKVGDIIEVVGE   48 (92)
T ss_dssp             CEEEECSCBCCCSSSCCCBCSSCEEECCCG
T ss_pred             eEEEEccccCCCCCccccccCCCEEEEeEe
Confidence            457899999999999999999999988653

>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4

Probab=93.38  E-value=3.7  Score=35.82  Aligned_cols=187  Identities=14%  Similarity=0.146  Sum_probs=98.7

Q ss_pred             HHHHHHhhhhhchhhhhhhhhccceeeeecceeehhhhhhhhhhhhccCCC------CCCCchHHHHHHHHhHHHHHHHH
Q 018995           49 RLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDN------TCTSGNTLSKAALSYGRARAQME  122 (348)
Q Consensus        49 ~LekLY~STRaaKhFQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~en------~~~~~~~LarAa~~yg~a~~~mE  122 (348)
                      .++.|+.-+..|..+=+||..=+.-=   ..=-.|.+.+|..=|++|..-.      + ..+ ++..|-..+-..-..+=
T Consensus        15 g~~~l~~r~~~g~~~~~el~~f~~eR---a~iE~eYak~L~kLa~~~~~~~~~~~~~~-~~~-t~~~aw~~~~~~~e~~a   89 (305)
T 2efl_A           15 QFDNLEKHTQWGIDILEKYIKFVKER---TEIELSYAKQLRNLSKKYQPKKNSKEEEE-YKY-TSCKAFISNLNEMNDYA   89 (305)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTSCC-------C-TTS-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhccccccCcccc-ccc-cHHHHHHHHHHHHHHHH
Confidence            45666666666666555554211100   0011356777777888885432      2 123 57666555555555556


Q ss_pred             HHHhHHHHHHhhhhhhHHHHhhcCC----------------Cchh----hhhHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 018995          123 KERGNLLKALGTQVAEPLRAMVLGA----------------PLDD----ARHLAQRYDRMRQEAEAQAIEVSKRQAKVRE  182 (348)
Q Consensus       123 kEre~l~r~L~~QV~ePLRaMv~Ga----------------PLED----ARhLaqRYdRmRQEaE~Qa~eV~rRq~k~re  182 (348)
                      +.+..+-..|.++|.+||+..+..-                ++.+    ......+|+...+|+|.--....  +++ .+
T Consensus        90 ~~h~~~a~~l~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~~~e~e~a~~~~~--~~~-~~  166 (305)
T 2efl_A           90 GQHEVISENMASQIIVDLARYVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFE--KMD-AD  166 (305)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-HC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHh-cc
Confidence            6677888888999999999887531                1111    12245567777777764222211  111 11


Q ss_pred             CCCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHH---------------HhhHHHHHHHHHHHHhHHHHHHH
Q 018995          183 TPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVES---------------QQQRLTLQRLIAMVEAERTYHQR  246 (348)
Q Consensus       183 s~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEa---------------QQQrlTlQRLiaMVeAER~YHqr  246 (348)
                      ...++   .+++-+..|+.+.+..+...-.+=..++..++.               +-|.+-..|+..|-+.=..|+..
T Consensus       167 ~~~s~---~~~eK~~~k~~~~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~~~lQ~le~~r~~~lk~~l~~~~~~  242 (305)
T 2efl_A          167 INVTK---ADVEKARQQAQIRHQMAEDSKADYSSILQKFNHEQHEYYHTHIPNIFQKIQEMEERRIVRMGESMKTYAEV  242 (305)
T ss_dssp             TTSCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            12222   245555556555555444333333334444444               34566667776666655555543

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A

Probab=93.30  E-value=0.012  Score=43.43  Aligned_cols=30  Identities=20%  Similarity=0.159  Sum_probs=26.1

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      .++.++++|+++.++||+|..||.|.|-.-
T Consensus        21 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~   50 (77)
T 1awj_A           21 TLVIALYDYQTNDPQELALRCDEEYYLLDS   50 (77)
T ss_dssp             SCCCCCCCBCCCCTTSCCBCSSSCCSCCCT
T ss_pred             eEEEECccCCCCCcCCcCCCCCCEEEEEEe
Confidence            457899999999999999999999877543

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.29  E-value=0.025  Score=41.05  Aligned_cols=28  Identities=21%  Similarity=0.400  Sum_probs=24.9

Q ss_pred             eEEecccCCC-CCCceeeeeeCCEEEEEe
Q 018995          308 LGEVVHPYQA-ESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       308 laev~hpF~a-esegELsLsvGDyVVVRq  335 (348)
                      ...++++|.+ +.+.||+|..||.|.|-+
T Consensus         9 ~~~Alydy~~~~~~~eLsf~~Gd~i~v~~   37 (71)
T 2gqi_A            9 RVRAILPYTKVPDTDEISFLKGDMFIVHN   37 (71)
T ss_dssp             CEEESSCCCCCTTSSCCCCCTTCBCCCCE
T ss_pred             EEEECcccCCCCCCCCCCCCCCCEEEEEE
Confidence            4689999999 999999999999987743

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A

Probab=93.20  E-value=0.026  Score=45.57  Aligned_cols=28  Identities=29%  Similarity=0.389  Sum_probs=25.2

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEE
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVR  334 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVR  334 (348)
                      +.+.++++|.|+.+.||+|..||.|.|-
T Consensus         6 ~~~~Alydy~a~~~~ELsf~~Gd~i~vl   33 (108)
T 2rqv_A            6 LYAIVLYDFKAEKADELTTYVGENLFIC   33 (108)
T ss_dssp             CCEEESSCCCCCSSSBCCCCSSEEECCC
T ss_pred             eEEEECCCcCCCCCCcCCcCCCCEEEEe
Confidence            3489999999999999999999999764

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A

Probab=93.20  E-value=0.012  Score=42.66  Aligned_cols=28  Identities=18%  Similarity=0.209  Sum_probs=24.8

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      .+.++++|.++.+.||+|..||.|.|-.
T Consensus         8 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~   35 (71)
T 1hsq_A            8 AVKALFDYKAQREDELTFIKSAIIQNVE   35 (71)
T ss_dssp             CCCCSSCCCCSSSSSCCCCTTCCCBSCC
T ss_pred             EEEECCCCCcCCCCccCCCCCCEEEEEE
Confidence            4689999999999999999999987643

>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}

Probab=92.75  E-value=4.5  Score=35.01  Aligned_cols=90  Identities=9%  Similarity=0.153  Sum_probs=50.5

Q ss_pred             HHHHHHhhhhhchhhhhhhhhccceeeeecceeehhhhhhhhhhhhccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhHH
Q 018995           49 RLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNL  128 (348)
Q Consensus        49 ~LekLY~STRaaKhFQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l  128 (348)
                      .++.|+.-+..|..+=+||..=+.==   ..=--|.+.+|..=|++|....  ..| +|..+-..+-..-..+-+.+..+
T Consensus        19 g~~~l~~~~~~g~~~~~el~~f~~eR---a~iE~eYak~L~kLa~~~~~~~--~~g-s~~~~w~~~~~~~e~~a~~h~~~   92 (276)
T 2v0o_A           19 GFDVLYHNMKHGQISTKELADFVRER---ATIEEAYSRSMTKLAKSASNYS--QLG-TFAPVWDVFKTSTEKLANCHLDL   92 (276)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHTSC--CCS-SSGGGHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCCCC--Ccc-hHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555543211100   0001355677777777776532  233 45555455555555666677777


Q ss_pred             HHHHhhhhhhHHHHhhc
Q 018995          129 LKALGTQVAEPLRAMVL  145 (348)
Q Consensus       129 ~r~L~~QV~ePLRaMv~  145 (348)
                      -..| .+|.+||+..+.
T Consensus        93 a~~l-~~~~~~l~~~~~  108 (276)
T 2v0o_A           93 VRKL-QELIKEVQKYGE  108 (276)
T ss_dssp             HHHH-HHHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHHHH
Confidence            7788 488899988764

>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A

Probab=92.36  E-value=6.5  Score=35.98  Aligned_cols=207  Identities=16%  Similarity=0.183  Sum_probs=112.9

Q ss_pred             HHHHHHHhhhhhchhhhhhhhhccceeeeecceeehhhhhhhhhhhhccC--CCCCCCchHHHHHHHHhHHHHHHHHHHH
Q 018995           48 QRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGS--DNTCTSGNTLSKAALSYGRARAQMEKER  125 (348)
Q Consensus        48 Q~LekLY~STRaaKhFQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~--en~~~~~~~LarAa~~yg~a~~~mEkEr  125 (348)
                      ...+.||.-+..|..|=.||..=+--=   ..=--+-+.+|..=|+||-.  ++.... .+|.+|-..+=..-..+=+.+
T Consensus        20 ~g~~~l~~~~~~g~~~~~el~~f~keR---a~iE~~Yak~L~kLakk~~~~~~~~~e~-gsl~~aw~~i~~e~e~~a~~H   95 (320)
T 3m3w_A           20 GNYRRTVQRVEDGHRLCGDLVSCFQER---ARIEKAYAQQLADWARKWRGAVEKGPQY-GTLEKAWHAFFTAAERLSELH   95 (320)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHSSCC-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhccCCCCC-ChHHHHHHHHHHHHHHHHHHH
Confidence            345666666777776666665321000   00013457777777877632  221223 468888777777777777788


Q ss_pred             hHHHHHHhhhhhhHHHHhhc--------CCCchhhhhH---------------------HHHHHHHHHHHHHHHHHHHHH
Q 018995          126 GNLLKALGTQVAEPLRAMVL--------GAPLDDARHL---------------------AQRYDRMRQEAEAQAIEVSKR  176 (348)
Q Consensus       126 e~l~r~L~~QV~ePLRaMv~--------GaPLEDARhL---------------------aqRYdRmRQEaE~Qa~eV~rR  176 (348)
                      ..+-..|.++|.+||+..+.        +.- -+-+.+                     ..+|+..++|++..-. .. +
T Consensus        96 ~~~a~~l~~~v~~~l~~~~k~~~~k~~~~~~-ke~K~~~~~~~k~qk~~~~~~~~l~kaKk~Y~~~c~e~~~a~~-~~-~  172 (320)
T 3m3w_A           96 LEVREKLHGPDSERVRTWQRGAFHRPVLGGF-RASRAAEDGFRKAQKPWLKRLKEVEASKKSYHTARKDEKTAQT-RE-S  172 (320)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHTC-----CC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HT-T
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-H
Confidence            88999999999999998652        211 111222                     3456666666333211 00 0


Q ss_pred             hhhhcCCCCChhhhhhhHH----HHHhHHH----HHHHHHHhcH---HHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHH
Q 018995          177 QAKVRETPGNPDLALKLDA----AEVKLHD----LKSNMAILGK---EAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQ  245 (348)
Q Consensus       177 q~k~res~gn~e~~~KLq~----AE~Kl~E----Lks~Ma~LGK---EA~aAM~aVEaQQQrlTlQRLiaMVeAER~YHq  245 (348)
                      .++. ++..++....|++.    +...+.+    ...++..+.+   .=-..|-.+=.+-|.+--.||.-|-+.=..|+.
T Consensus       173 ~~~~-d~~~s~ke~~K~~~k~~k~~~~~~~a~~~Y~~~l~~~n~~~~~y~~~~~~~~~~~Q~lEe~Ri~~lk~~l~~~~~  251 (320)
T 3m3w_A          173 HAKA-DSSMSQEQLRKLQERVGRCTKEAEKMKTQYEQTLAELNRYTPRYMEDMEQAFESCQAAERQRLLFFKDVLLTLHQ  251 (320)
T ss_dssp             SCCS-SCCC---CCSSSSSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccc-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0110 11233444555542    2222222    2223333322   112346666667788888888888888888887


Q ss_pred             HH----HHHHHHHHHHHHhhh
Q 018995          246 RV----LQILDQLEGEMLSER  262 (348)
Q Consensus       246 rv----~~ILd~L~~eMvsEr  262 (348)
                      ++    ...+++++.+|..--
T Consensus       252 ~~~~~~~~~~~~~~e~~~~~i  272 (320)
T 3m3w_A          252 HLDLSSSDKFHELHRDLQQSI  272 (320)
T ss_dssp             HHCGGGCHHHHHHHHHHHHHH
T ss_pred             HHccccchhHHHHHHHHHHHH
Confidence            65    266788888776553

>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4

Probab=90.77  E-value=8  Score=33.86  Aligned_cols=117  Identities=15%  Similarity=0.142  Sum_probs=68.9

Q ss_pred             HHHHHHhhhhhchhhhhhhhhccceeeeecceeehhhhhhhhhhhhccCCC---C--CCCchHHHHHHHHhHHHHHHHHH
Q 018995           49 RLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDN---T--CTSGNTLSKAALSYGRARAQMEK  123 (348)
Q Consensus        49 ~LekLY~STRaaKhFQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~en---~--~~~~~~LarAa~~yg~a~~~mEk  123 (348)
                      .++.|+.-+..|..|=+||..=+.-=   ..=--|-+.+|..=|+||..-.   +  ...+ ++..|-..+-..-..+=+
T Consensus         8 g~~~l~~~~~~g~~~~~el~~f~keR---a~iE~eYak~L~kLakk~~~~~~~~~~~~~~~-t~~~~w~~~l~~~e~~a~   83 (301)
T 2efk_A            8 QFEVLERHTQWGLDLLDRYVKFVKER---TEVEQAYAKQLRSLVKKYLPKRPAKDDPESKF-SQQQSFVQILQEVNDFAG   83 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHSCC-------CTTS-HHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhccccccccccccc-hHHHHHHHHHHHHHHHHH
Confidence            44555555555555555543211000   0001356777888888886431   1  1123 677777777777777777


Q ss_pred             HHhHHHHHHhhhhhhHHHHhhcCC----------------Cchh----hhhHHHHHHHHHHHHHHH
Q 018995          124 ERGNLLKALGTQVAEPLRAMVLGA----------------PLDD----ARHLAQRYDRMRQEAEAQ  169 (348)
Q Consensus       124 Ere~l~r~L~~QV~ePLRaMv~Ga----------------PLED----ARhLaqRYdRmRQEaE~Q  169 (348)
                      .+..+-..|.++|.+||+..+...                ++.+    ..-...+|+...+|+|.-
T Consensus        84 ~h~~~a~~L~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~~~e~e~a  149 (301)
T 2efk_A           84 QRELVAENLSVRVCLELTKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKA  149 (301)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888999999999999876431                1211    123455777777777753

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A

Probab=90.19  E-value=0.17  Score=42.95  Aligned_cols=30  Identities=20%  Similarity=0.342  Sum_probs=26.9

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      ..+.++++|+++.+.||+|..||.|.|-.-
T Consensus       159 ~~~~al~~y~~~~~~eL~~~~Gd~i~v~~~  188 (217)
T 1gri_A          159 TYVQALFDFDPQEDGELGFRRGDFIHVMDN  188 (217)
T ss_dssp             CEEEESSCCCCSSTTBCCCCTTCEEEEEEC
T ss_pred             eEEEecCCccCCCCCcCCCCCCCEEEEEEe
Confidence            568999999999999999999999988553

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=89.97  E-value=0.15  Score=48.94  Aligned_cols=31  Identities=10%  Similarity=0.202  Sum_probs=26.4

Q ss_pred             eeeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       306 yFlaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      .-.+.++++|+++.++||+|..||.|.|-+.
T Consensus        85 ~~~~~alyd~~~~~~~el~~~~gd~i~v~~~  115 (535)
T 2h8h_A           85 VTTFVALYDYESRTETDLSFKKGERLQIVNN  115 (535)
T ss_dssp             --CEEESSCBCCCSSSBCCBCTTCEEEEEEC
T ss_pred             CcEEEEccccCCcCCCcCCcCCCCEEEEEEe
Confidence            3458899999999999999999999987654

>1u3o_A Huntingtin-associated protein-interacting protein; SH3, CIS-proline,, signaling protein; NMR {Rattus norvegicus}

Probab=89.70  E-value=0.15  Score=40.61  Aligned_cols=25  Identities=28%  Similarity=0.456  Sum_probs=22.7

Q ss_pred             EEecccCCCCCCceeeeeeCCEEEE
Q 018995          309 GEVVHPYQAESDVELTLSVGDYVVV  333 (348)
Q Consensus       309 aev~hpF~aesegELsLsvGDyVVV  333 (348)
                      --|+|+|.|.++.|||++.||.|-|
T Consensus        20 ~valydF~Ar~~~ELS~~kGd~vev   44 (82)
T 1u3o_A           20 TVVLQDFSAAHSSELSIQVGQTVEL   44 (82)
T ss_dssp             EECSSCBCCCSTTCCCBCTTCEEEE
T ss_pred             EEEEeeecCCCCCeeeEcCCCEEEE
Confidence            4799999999999999999998765

>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}

Probab=89.56  E-value=10  Score=33.38  Aligned_cols=62  Identities=15%  Similarity=0.123  Sum_probs=40.5

Q ss_pred             hhhhhhhhhhhhccC--CCCCCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhc
Q 018995           83 EIGTKLSEDSRKYGS--DNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVL  145 (348)
Q Consensus        83 Ei~~KLaeDc~KYG~--en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~  145 (348)
                      |.+.+|..=|++|-.  .+....| +|..|-..+=..-..+=+-+..+-..|.++|.+||+..+.
T Consensus        40 ~Yak~L~kL~~~~~~~~~~~~~~g-s~~~aw~~~~~~~e~~a~~h~~~a~~l~~~v~~~l~~~~~  103 (290)
T 3i2w_A           40 GYAKSLRTWSKKWGELIEKGPEYG-TTEAAWKGVLTESERISDVHMKIKDNLCNDVNSQIKTWQK  103 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcCCCCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556666666521  1111234 5777766666666666677888888899999999998874

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B

Probab=89.17  E-value=0.22  Score=42.57  Aligned_cols=29  Identities=24%  Similarity=0.197  Sum_probs=25.5

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      .+.++++|+++.++||+|..||.|.|-.-
T Consensus        83 ~~~al~dy~a~~~~eLs~~~Gd~i~vl~~  111 (193)
T 1ng2_A           83 PYVAIKAYTAVEGDEVSLLEGEAVEVIHK  111 (193)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEC
T ss_pred             eeeeccccCCCCCCcccccCCCEEEEEEe
Confidence            45689999999999999999999987654

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans}

Probab=88.10  E-value=0.3  Score=40.70  Aligned_cols=29  Identities=10%  Similarity=0.189  Sum_probs=25.8

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      -.+.++++|+++.++||++..||.|.|-.
T Consensus       119 ~~~~alydy~~~~~~eLsf~~Gd~i~v~~  147 (174)
T 3qwx_X          119 EVVVGTFKFTGERETDLPFEQGERLEILS  147 (174)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEE
T ss_pred             cEEEEecCcccCCCCccccccCCEEEEEE
Confidence            46789999999999999999999997754

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A

Probab=86.65  E-value=0.45  Score=33.94  Aligned_cols=27  Identities=26%  Similarity=0.203  Sum_probs=20.8

Q ss_pred             EecccCCCCCCceeeeeeCCEEEEEee
Q 018995          310 EVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       310 ev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      .+.++|.++++.||||..||.|.|-+-
T Consensus        14 ~~~~~~~~~~~~eLsf~~Gd~i~v~~~   40 (70)
T 1gcq_C           14 YGIPPPPGAFGPFLRLNPGDIVELTKA   40 (70)
T ss_dssp             SSSSCCGGGCSCBCCBCTTCEEEEEEC
T ss_pred             EecCCCCCCCCCcCCcCCCCEEEEEeC
Confidence            445666666677999999999987654

>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}

Probab=84.59  E-value=28  Score=33.02  Aligned_cols=63  Identities=10%  Similarity=0.054  Sum_probs=43.7

Q ss_pred             hhhhhhhhhhhhccCCC--CCCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhc
Q 018995           83 EIGTKLSEDSRKYGSDN--TCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVL  145 (348)
Q Consensus        83 Ei~~KLaeDc~KYG~en--~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~  145 (348)
                      |.+.+|..=|+||..-.  ....+++|+.|-..+=..-.++=+.+..+-..|.++|++||..++.
T Consensus        44 eYAk~L~kLakk~~~k~~~~~~~~~tl~~aW~~ll~ete~~a~~H~~lae~L~~~v~~~l~~~~k  108 (406)
T 4dyl_A           44 EYAGLLHHMSLQDSGGQSRAISPDSPISQSWAEITSQTEGLSRLLRQHAEDLNSGPLSKLSLLIR  108 (406)
T ss_dssp             HHHHHHHHHC------------CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56888999999997521  1123457888877777777778888999999999999999988775

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}

Probab=84.42  E-value=0.59  Score=43.28  Aligned_cols=30  Identities=20%  Similarity=0.352  Sum_probs=26.6

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      -.+.++++|+++.++||++..||.|.|-.-
T Consensus       175 ~~~~alydy~~~~~~eLsf~~Gd~i~v~~~  204 (341)
T 2dyb_A          175 PRAEALFDFTGNSKLELNFKAGDVIFLLSR  204 (341)
T ss_dssp             CEEEESSCBCCSSSSBCCBCTTCEEEEEEE
T ss_pred             cEEEEEEeeCCCCCCcCCccCCCEEEEEEe
Confidence            458999999999999999999999988553

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A*

Probab=84.30  E-value=0.21  Score=45.54  Aligned_cols=33  Identities=24%  Similarity=0.370  Sum_probs=26.8

Q ss_pred             cceeeEEecccCCCCC--CceeeeeeCCEEEEEee
Q 018995          304 MGYFLGEVVHPYQAES--DVELTLSVGDYVVVRKV  336 (348)
Q Consensus       304 ~~yFlaev~hpF~aes--egELsLsvGDyVVVRqV  336 (348)
                      .....+.++++|.+++  ++||+|.+||.|.|-+.
T Consensus       235 ~~~~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~  269 (303)
T 2lqn_A          235 NGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRM  269 (303)
Confidence            3567899999997555  88999999999988543

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1

Probab=82.68  E-value=0.66  Score=33.93  Aligned_cols=27  Identities=22%  Similarity=0.098  Sum_probs=20.6

Q ss_pred             EecccCCCC---CCceeeeeeCCEEEEEee
Q 018995          310 EVVHPYQAE---SDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       310 ev~hpF~ae---segELsLsvGDyVVVRqV  336 (348)
                      .+.++|+++   .+.||+|..||.|.|-+-
T Consensus        19 ~a~~~~~~~~~~~~~eLsf~~Gd~i~v~~~   48 (78)
T 1k1z_A           19 QEYYGIPPPPGAFGGFLRLNPGDIVELTKA   48 (78)
T ss_dssp             SCBSSCSCCSSSSCCCCCBCTTCEEEEEEC
T ss_pred             EECCCCCCCCCCCCCccCCCCCCEEEEEEc
Confidence            455677764   379999999999987554

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A

Probab=81.81  E-value=0.35  Score=44.07  Aligned_cols=31  Identities=29%  Similarity=0.388  Sum_probs=27.2

Q ss_pred             eeeEEecccCC--CCCCceeeeeeCCEEEEEee
Q 018995          306 YFLGEVVHPYQ--AESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       306 yFlaev~hpF~--aesegELsLsvGDyVVVRqV  336 (348)
                      -..+.++++|.  |+.++||+|.+||.|.|-+.
T Consensus       237 ~~~~~al~d~~~~a~~~~eL~~~~Gd~i~v~~~  269 (304)
T 2eyz_A          237 PIYARVIQKRVPNAYDKTALALEVGELVKVTKI  269 (304)
T ss_dssp             CCCSCCSSCBCCCTTCSSCCCBCTTSCCEEEEE
T ss_pred             CEEEEEeeeecCCCCCCCeecccCCCEEEEEEe
Confidence            35679999999  88999999999999988764

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A

Probab=80.65  E-value=0.91  Score=41.38  Aligned_cols=30  Identities=13%  Similarity=0.301  Sum_probs=26.6

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      -.+.++++|.++.+.||++..||.|.|-+-
T Consensus       135 ~~~~alydy~~~~~~eLsf~~Gd~i~v~~~  164 (304)
T 2eyz_A          135 EYVRALFDFNGNDEEDLPFKKGDILRIRDK  164 (304)
T ss_dssp             CEEEECSCCCCSCSSSCCCCTTCEEEEEEC
T ss_pred             eeEEEEeeecCCCCCcCcccCCCEEEEEEe
Confidence            357889999999999999999999988663

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}

Probab=80.17  E-value=1  Score=40.99  Aligned_cols=29  Identities=10%  Similarity=0.189  Sum_probs=26.0

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      -.+.++++|+++.+.||+|..||.|.|-.
T Consensus       148 ~~~~al~dy~~~~~~eLsf~~Gd~i~v~~  176 (308)
T 3qwy_A          148 EVVVGTFKFTGERETDLPFEQGERLEILS  176 (308)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEE
T ss_pred             eeEEEeceEcCCCCCcCcCCCCCEEEEEE
Confidence            45889999999999999999999997755

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	348
d1i4da_	200	a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Hum	6e-15
d1urua_	217	a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila	5e-11
d2d4ca1	237	a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sap	4e-06
d1ujya_	76	b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens	0.004

>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]} Length = 200

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: Arfaptin, Rac-binding fragment
domain: Arfaptin, Rac-binding fragment
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.5 bits (172), Expect = 6e-15
 Identities = 27/204 (13%), Positives = 67/204 (32%), Gaps = 11/204 (5%)

Query: 50  LERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSK 109
           LE      R  K     +++            ++    L +        +       L +
Sbjct: 8   LELQIELLRETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSP-----ELQE 62

Query: 110 AALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQ 169
                   +  + K    LL A+   V+      ++   ++D     ++Y+  R E +A 
Sbjct: 63  EFGYNAETQKLLCKNGETLLGAVNFFVSSINT--LVTKTMEDTLMTVKQYEAARLEYDAY 120

Query: 170 AIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLT 229
             ++ +     R+         +L++A+      +     L  + A  +  +E  + ++ 
Sbjct: 121 RTDLEELSLGPRDAGTRG----RLESAQATFQAHRDKYEKLRGDVAIKLKFLEENKIKVM 176

Query: 230 LQRLIAMVEAERTYHQRVLQILDQ 253
            ++L+    A   Y     + L+Q
Sbjct: 177 HKQLLLFHNAVSAYFAGNQKQLEQ 200

>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 217

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: Amphiphysin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 59.3 bits (143), Expect = 5e-11
 Identities = 30/221 (13%), Positives = 61/221 (27%), Gaps = 21/221 (9%)

Query: 47  HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNT 106
              L        +    Q++       YI            L +   +            
Sbjct: 15  DDHLNNFNRQQASANRLQKE----FNNYIRCVRAAQAASKTLMDSVCEIYEP-------- 62

Query: 107 LSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA 166
                 +        E    +    LG QV  PL          + +   ++ +R   + 
Sbjct: 63  QWSGYDALQAQTGASESLWADFAHKLGDQVLIPLNT--YTGQFPEMKKKVEKRNRKLIDY 120

Query: 167 EAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQ 226
           + Q          ++         +KL     +L + +    IL  E    + A+   + 
Sbjct: 121 DGQ----RHSFQNLQANANKRKDDVKLTKGREQLEEARRTYEILNTELHDELPALYDSRI 176

Query: 227 RLTLQRLIAMVEAERTYHQRVLQILDQLEGEM---LSERQR 264
              +  L  +   E+ +H    +I  +LE  +    +E QR
Sbjct: 177 LFLVTNLQTLFATEQVFHNETAKIYSELEAIVDKLATESQR 217

>d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 237

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: Endophilin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (106), Expect = 4e-06
 Identities = 22/150 (14%), Positives = 57/150 (38%), Gaps = 17/150 (11%)

Query: 109 KAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEA 168
            A    G A  ++ + + +L   +     +PL+ +       D R +        ++ E 
Sbjct: 102 PALGEVGEAMRELSEVKDSLDIEVKQNFIDPLQNLHDK----DLREIQSALQHHLKKLEG 157

Query: 169 QAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRL 228
           + ++   ++ +  +              + +L           + A ++M  +       
Sbjct: 158 RRLDFDYKKKRQGK------------IPDEELRQALEKFDESKEIAESSMFNLLEMDIEQ 205

Query: 229 TLQRLIAMVEAERTYHQRVLQILDQLEGEM 258
            + +L A+V+A+  YH++ +QIL Q+   +
Sbjct: 206 -VSQLSALVQAQLEYHKQAVQILQQVTVRL 234

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.7 bits (77), Expect = 0.004
 Identities = 9/42 (21%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 299 GSTDAMG--YFLGEVVHPYQAESDVELTLSVGDYVVVRKVHN 338
           GS+ + G    + +    ++  ++ EL++  GD + V +V  
Sbjct: 1   GSSGSSGSHQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEE 42

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	348
d1i4da_	200	Arfaptin, Rac-binding fragment {Human (Homo sapien	99.25
d2d4ca1	237	Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]}	99.13
d1urua_	217	Amphiphysin {Fruit fly (Drosophila melanogaster) [	98.9
d2elba1	268	DCC-interacting protein 13-alpha, APPL1 {Human (Ho	98.26
d1y2oa1	248	BAP2/IRSp53 N-terminal domain {Human (Homo sapiens	98.19
d1zuua1	56	BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	97.04
d1ujya_	76	Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606	96.6
d1gria1	56	Growth factor receptor-bound protein 2 (GRB2), N-	96.48
d1ue9a_	80	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	96.45
d1j3ta_	74	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	96.41
d1jo8a_	58	Actin binding protein ABP1 {Baker's yeast (Sacchar	96.41
d1udla_	98	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	96.39
d1ckaa_	57	C-Crk, N-terminal SH3 domain {Mouse (Mus musculus)	96.36
d1u06a1	55	alpha-Spectrin, SH3 domain {Chicken (Gallus gallus	96.36
d1i07a_	59	EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 1009	96.29
d1sema_	58	Growth factor receptor-bound protein 2 (GRB2), N-	96.28
d1utia_	57	Grb2-related adaptor protein 2 (Mona/Gads) {Mouse	96.27
d1u5sa1	71	Nck-2 {Human (Homo sapiens) [TaxId: 9606]}	96.21
d1bb9a_	83	Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 101	96.13
d1uffa_	93	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	96.04
d1awwa_	67	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	95.91
d2iima1	62	p56-lck tyrosine kinase, SH3 domain {Human (Homo s	95.91
d1gcqa_	56	Growth factor receptor-bound protein 2 (GRB2), N-	95.9
d2efla1	288	Formin-binding protein 1, FNBP1 {Human (Homo sapie	95.87
d1oota_	58	Hypothetical protein YFR024c {Baker's yeast (Sacch	95.86
d1uhca_	79	Hypothetical protein Baa76854.1 (KIAA1010) {Human	95.86
d1arka_	60	SH3 domain from nebulin {Human (Homo sapiens) [Tax	95.8
d1wlpb1	53	p47pox (neutrophil cytosolic factor 1) {Human (Hom	95.75
d1qcfa1	65	Hemapoetic cell kinase Hck {Human (Homo sapiens) [	95.75
d1ugva_	72	Olygophrenin-1 like protein (KIAA0621) {Human (Hom	95.75
d1uj0a_	58	Signal transducing adaptor molecule Stam2 {Mouse (	95.7
d2v1ra1	67	Peroxisomal membrane protein Pex13p {Baker's yeast	95.67
d1efna_	57	Fyn proto-oncogene tyrosine kinase, SH3 domain {Hu	95.64
d1phta_	83	Phosphatidylinositol 3-kinase (p85-alpha subunit,	95.63
d1ycsb2	63	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	95.59
d1k9aa1	71	Carboxyl-terminal src kinase (csk) {Human (Homo sa	95.55
d1ug1a_	92	Hypothetical protein Baa76854.1 (KIAA1010) {Human	95.5
d1k4us_	62	p67phox {Human (Homo sapiens) [TaxId: 9606]}	95.49
d2rn8a1	53	Bruton's tyrosine kinase {Mus musculus [TaxId: 100	95.33
d2hspa_	71	Phospholipase C, SH3 domain {Human (Homo sapiens)	95.23
d1wfwa_	74	Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}	95.02
d1fmka1	64	c-src protein tyrosine kinase {Human (Homo sapiens	94.98
d1ng2a1	58	p47pox (neutrophil cytosolic factor 1) {Human (Hom	94.9
d1opka1	57	Abl tyrosine kinase, SH3 domain {Mouse (Mus muscul	94.73
d1uhfa_	69	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	94.39
d1gl5a_	67	tyrosine kinase tec {Mouse (Mus musculus) [TaxId:	94.3
d1wiea_	96	RIM binding protein 2, RIMBP2 {Human (Homo sapiens	94.25
d1ng2a2	118	p47pox (neutrophil cytosolic factor 1) {Human (Hom	94.05
d1spka_	72	BAI1-associated protein 2-like 1 (RIKEN cDNA 13000	92.78
d1i1ja_	106	Melanoma inhibitory activity protein {Human (Homo	92.68
d1gcqc_	69	Vav N-terminal SH3 domain {Mouse (Mus musculus) [T	86.22
d1kjwa1	96	Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}	84.48
d1t0ha_	96	SH3-like domain of the L-type calcium channel {Rab	81.59

>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: Arfaptin, Rac-binding fragment
domain: Arfaptin, Rac-binding fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.2e-10  Score=93.64  Aligned_cols=178  Identities=13%  Similarity=0.158  Sum_probs=143.6

Q ss_pred             hhhhhccceeeeecceeehhhhhhhhhhhhccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhh
Q 018995           65 RDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMV  144 (348)
Q Consensus        65 rdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv  144 (348)
                      +.|++-++.++..+..-......|+..++.+|..+|     .+..+-..||.+...|++.++.++..+...|.+|++...
T Consensus        23 ~~l~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   97 (200)
T d1i4da_          23 ESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSP-----ELQEEFGYNAETQKLLCKNGETLLGAVNFFVSSINTLVT   97 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCG-----GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            556666677776666666777788888888887654     256677789999999999999999999988887776533


Q ss_pred             cCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHHH
Q 018995          145 LGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQ  224 (348)
Q Consensus       145 ~GaPLEDARhLaqRYdRmRQEaE~Qa~eV~rRq~k~res~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQ  224 (348)
                        ..+.+.++...+|++.|.+-+.....+.+.+.+.+.    .-...||+.||.++.+.+..+..+..+...-|-.++..
T Consensus        98 --~~~~~~~~~~kk~~~~~~dyd~~~~k~~~~~~~~~~----~~~~~kl~~ae~~~~~a~~~fe~~~~~~~~~l~~l~~~  171 (200)
T d1i4da_          98 --KTMEDTLMTVKQYEAARLEYDAYRTDLEELSLGPRD----AGTRGRLESAQATFQAHRDKYEKLRGDVAIKLKFLEEN  171 (200)
T ss_dssp             --THHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcccc----cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence              468899999999999999999999988776555331    22245999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 018995          225 QQRLTLQRLIAMVEAERTYHQRVLQILDQ  253 (348)
Q Consensus       225 QQrlTlQRLiaMVeAER~YHqrv~~ILd~  253 (348)
                      +.+.-.+.|++++++..+||+.++..|++
T Consensus       172 r~~~~~~~l~~~~~~~~~f~~~~~~~le~  200 (200)
T d1i4da_         172 KIKVMHKQLLLFHNAVSAYFAGNQKQLEQ  200 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            88888999999999999999999998863

>d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: Endophilin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=4e-09  Score=87.24  Aligned_cols=215  Identities=18%  Similarity=0.238  Sum_probs=150.0

Q ss_pred             HHHHHHHHHhcCCCCCCCCcceechHHHhhHHHHHHHHhhhhhc-hhhhhhhhhccceeeeecc----------------
Q 018995           17 RQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAG-KHFQRDIVRGVEGYIVTGS----------------   79 (348)
Q Consensus        17 kQQQAV~Kqfg~~gy~~~d~~v~DEaElq~HQ~LekLY~STRaa-KhFQrdIVRgvEGfis~gs----------------   79 (348)
                      |-+|.|.-.||.+     |-.=+|+.    ..+||+-+..+|.+ +.++|++.--.++-+....                
T Consensus         2 R~~q~~~ek~G~~-----e~T~ld~~----f~~lEk~~~~~~~~~~kl~k~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~   72 (237)
T d2d4ca1           2 KATQKVSEKVGGA-----EGTKLDDD----FKEMERKVDVTSRAVMEIMTKTIEYLQPNPASRAKLSMINTMSKIRGQEK   72 (237)
T ss_dssp             HHHHHHHHHHTSH-----HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHCCSGGGCSCC--------------
T ss_pred             chhHHHHhHcCCC-----CcCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHhhhccccc
Confidence            3467888999832     22324543    56778878777766 7888877654443221111                


Q ss_pred             --eeehhhhhhhhhhhhccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHH
Q 018995           80 --KQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQ  157 (348)
Q Consensus        80 --Kq~Ei~~KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaq  157 (348)
                        .-..-...|+..+..+|.+-.  .++.++.+-..||.+...|...|.++..-+...|.+||+..+..    |-+....
T Consensus        73 ~~~~~~~~~~l~~~~~~~~~~~~--~d~~~~~~L~~~~~~~~~i~~~~~~~~~~i~~~v~~pl~~~l~~----d~~~~~~  146 (237)
T d2d4ca1          73 GPGYPQAEALLAEAMLKFGRELG--DDCNFGPALGEVGEAMRELSEVKDSLDIEVKQNFIDPLQNLHDK----DLREIQS  146 (237)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHC--SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHT----HHHHHHH
T ss_pred             ccchhhhhHHHHHHHHHhcccCC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence              111223457888888877743  34568899999999999999999999999999999999999884    5565666


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcCCCCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 018995          158 RYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMV  237 (348)
Q Consensus       158 RYdRmRQEaE~Qa~eV~rRq~k~res~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQRLiaMV  237 (348)
                      .+++.|...+..-.+..+.+.|....   ++  -.|+.|+.+       +..+-.++...|-.+..=..-+ +..|..+|
T Consensus       147 ~~~~~rk~~d~~~~~~~~~~~k~~~~---~~--e~l~~a~~~-------~e~~~~~~~~~l~~l~~~~~~~-~~~l~~~~  213 (237)
T d2d4ca1         147 ALQHHLKKLEGRRLDFDYKKKRQGKI---PD--EELRQALEK-------FDESKEIAESSMFNLLEMDIEQ-VSQLSALV  213 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSC---CH--HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhh---hH--HHHHHHHHH-------HHHHHHHHHHHHHHHHHccHHH-HHHHHHHH
Confidence            67777777777666666666664432   11  234555555       4445566777887775433222 58899999


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHH
Q 018995          238 EAERTYHQRVLQILDQLEGEML  259 (348)
Q Consensus       238 eAER~YHqrv~~ILd~L~~eMv  259 (348)
                      +++..||+...++|..|..+|-
T Consensus       214 ~aq~~y~~~~~~~l~~l~~~l~  235 (237)
T d2d4ca1         214 QAQLEYHKQAVQILQQVTVRLE  235 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999998874

>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: Amphiphysin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.90  E-value=7.7e-08  Score=77.90  Aligned_cols=203  Identities=16%  Similarity=0.185  Sum_probs=162.6

Q ss_pred             CcceechHHHhhHHHHHHHHhhhhhchhhhhhhhhccceeeeecceeehhhhhhhhhhhhccCCCCCCCchHHHHHHHHh
Q 018995           35 DNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSY  114 (348)
Q Consensus        35 d~~v~DEaElq~HQ~LekLY~STRaaKhFQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~en~~~~~~~LarAa~~y  114 (348)
                      +-. +||.=-...+.|..+=..   .|+    |.+.+++|+..+..-......|++.++.++...++ ..       ..+
T Consensus         7 ~~T-~D~~fe~~~~~~~~~e~~---l~~----l~k~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~-------~~~   70 (217)
T d1urua_           7 DRT-ADEIFDDHLNNFNRQQAS---ANR----LQKEFNNYIRCVRAAQAASKTLMDSVCEIYEPQWS-GY-------DAL   70 (217)
T ss_dssp             TCC-HHHHHHHHHHHHHHHHHH---HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTST-TH-------HHH
T ss_pred             CCc-ccHHHHHHHHHHHHHHHH---HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-hH-------HHH
Confidence            444 387765555555555333   233    44456677777777788889999999999877542 11       234


Q ss_pred             HHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCChhhhhhhH
Q 018995          115 GRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLD  194 (348)
Q Consensus       115 g~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEaE~Qa~eV~rRq~k~res~gn~e~~~KLq  194 (348)
                      ......++.-..++...+..+|.+||+..+.  -+.+.+.+..+.++.+.+.+..-..+.+.+.|.+.    ..+-.|+.
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~v~~pL~~~~~--~~~~~~~~~kkr~~~~~dyd~~~~~l~k~~~k~~~----~~~~~~l~  144 (217)
T d1urua_          71 QAQTGASESLWADFAHKLGDQVLIPLNTYTG--QFPEMKKKVEKRNRKLIDYDGQRHSFQNLQANANK----RKDDVKLT  144 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCB----TTBCCTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----ccchhhhH
Confidence            5566677777888999999999999999885  58889999999999999999999988887766442    23456899


Q ss_pred             HHHHhHHHHHHHHHHhcHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 018995          195 AAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEML  259 (348)
Q Consensus       195 ~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeAER~YHqrv~~ILd~L~~eMv  259 (348)
                      .|+.++...+.....++.+-..-|-.++......-.+-|.+++++...||+.+..++..|+..|.
T Consensus       145 ~~e~~~~~a~~~fe~~~~~l~~el~~~~~~~~~~~~~~l~~~~~~q~~~~~~~~~~~~~l~~~~~  209 (217)
T d1urua_         145 KGREQLEEARRTYEILNTELHDELPALYDSRILFLVTNLQTLFATEQVFHNETAKIYSELEAIVD  209 (217)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998888888899999999999999999999999998774

>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=2.7e-05  Score=66.18  Aligned_cols=139  Identities=12%  Similarity=0.131  Sum_probs=111.5

Q ss_pred             hHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q 018995          105 NTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETP  184 (348)
Q Consensus       105 ~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEaE~Qa~eV~rRq~k~res~  184 (348)
                      ..+.-+-..||.+.+.+...+..|+.-+-..|.+||...+.+. +..++.+..+||+.+.+-++......+.. |.|.  
T Consensus        75 ~~~~~~l~~f~~~~~el~~~~~~l~~~~~~~~~~pL~~f~~~d-i~~~ke~kk~fek~~~~yd~~l~k~~~~~-k~k~--  150 (268)
T d2elba1          75 EVMSSTLQQFSKVIDELSSCHAVLSTQLADAMMFPITQFKERD-LKEILTLKEVFQIASNDHDAAINRYSRLS-KKRE--  150 (268)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTTTH-HHHHHHHHHHHHHHHHHHHHHHHHHHTCC-CC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccCC--
Confidence            4577788899999999999999999999999999999998765 48888999999999999998766554332 2221  


Q ss_pred             CChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018995          185 GNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQIL  251 (348)
Q Consensus       185 gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeAER~YHqrv~~IL  251 (348)
                        ++  ....-|+..|.+.+.+..-..-+-..+|..++.+....-++.|++.+++.-+||+...++|
T Consensus       151 --~~--~~~~Ea~~~l~~~r~~f~~~~~d~~~~l~~l~~~k~~~~l~~l~~~~~a~~~ff~~~~~~l  213 (268)
T d2elba1         151 --ND--KVKYEVTEDVYTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENL  213 (268)
T ss_dssp             -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             --cc--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              11  2233466778888888888888888999999988888889999999999999988777665

>d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: IMD domain
domain: BAP2/IRSp53 N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=2.2e-05  Score=66.56  Aligned_cols=171  Identities=12%  Similarity=0.102  Sum_probs=110.1

Q ss_pred             hhhhhhhhhhccCCCCC-CCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHH----H
Q 018995           85 GTKLSEDSRKYGSDNTC-TSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQR----Y  159 (348)
Q Consensus        85 ~~KLaeDc~KYG~en~~-~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqR----Y  159 (348)
                      +..|++-..++|...+. ....-|.-|-..||..+..|+..++.|...+..+|..||..-+.+-|= ...+...+    |
T Consensus        49 ~~~f~dal~~~~~~~~~~~~~~~ig~~L~~~~~~~~~i~~~~~~l~~~~~~~~i~PL~~~~~~d~k-~i~~~kK~~~k~~  127 (248)
T d1y2oa1          49 AKGYFDALVKMGELASESQGSKELGDVLFQMAEVHRQIQNQLEEMLKSFHNELLTQLEQKVELDSR-YLSAALKKYQTEQ  127 (248)
T ss_dssp             HHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            34455555565532111 122348888999999999999999999999999999999998775432 13333333    4


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcCCCCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHHHhhHHH--HHHHHHHH
Q 018995          160 DRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLT--LQRLIAMV  237 (348)
Q Consensus       160 dRmRQEaE~Qa~eV~rRq~k~res~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlT--lQRLiaMV  237 (348)
                      ++.+...+.-..+..|-+.|.+..........|+..++.-+.+.+..+..+=.+.. -.+-++ -..|..  +..|.+.+
T Consensus       128 k~~~~~l~K~~~~~~k~~kk~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~-~~~~~e-erkr~~~lv~~l~~~~  205 (248)
T d1y2oa1         128 RSKGDALDKCQAELKKLRKKSQGSKNPQKYSDKELQYIDAISNKQGELENYVSDGY-KTALTE-ERRRFCFLVEKQCAVA  205 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHH
Confidence            45556666555666555555554443333455666565555555555544333221 112223 234555  38999999


Q ss_pred             HhHHHHHHHHHHHHHHHHHHH
Q 018995          238 EAERTYHQRVLQILDQLEGEM  258 (348)
Q Consensus       238 eAER~YHqrv~~ILd~L~~eM  258 (348)
                      +++-+||....++|.++...+
T Consensus       206 ~a~~~~~~q~~~~l~~~~~~~  226 (248)
T d1y2oa1         206 KNSAAYHSKGKELLAQKLPLW  226 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhHHH
Confidence            999999999999999988654

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.04  E-value=0.00011  Score=50.98  Aligned_cols=26  Identities=27%  Similarity=0.475  Sum_probs=24.0

Q ss_pred             EEecccCCCCCCceeeeeeCCEEEEE
Q 018995          309 GEVVHPYQAESDVELTLSVGDYVVVR  334 (348)
Q Consensus       309 aev~hpF~aesegELsLsvGDyVVVR  334 (348)
                      |+|+++|.++.++||||..||+|.|-
T Consensus         2 aralydf~a~~~~ELs~~~Gd~i~v~   27 (56)
T d1zuua1           2 NKVLYAYVQKDDDEITITPGDKISLV   27 (56)
T ss_dssp             CEECSCBCCCSTTBCCBCTTCCEEEE
T ss_pred             CEEeeeeCCCCCCEeeECCCCEEEEE
Confidence            68999999999999999999999664

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.00065  Score=49.81  Aligned_cols=32  Identities=19%  Similarity=0.365  Sum_probs=28.9

Q ss_pred             ceeeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       305 ~yFlaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      ..++++++++|+++.+.||||..||.|.|-.-
T Consensus         9 ~~~~~rAlydy~a~~~~eLs~~~Gd~i~v~~~   40 (76)
T d1ujya_           9 HQLIVKARFNFKQTNEDELSVCKGDIIYVTRV   40 (76)
T ss_dssp             CCEEEECCSCBCCSSTTSCCBCSSCCEEESSC
T ss_pred             CCEEEEECccCCCCCCCCccCCCCCEEEEeEE
Confidence            56899999999999999999999999988653

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.00053  Score=47.85  Aligned_cols=25  Identities=28%  Similarity=0.380  Sum_probs=23.3

Q ss_pred             EEecccCCCCCCceeeeeeCCEEEE
Q 018995          309 GEVVHPYQAESDVELTLSVGDYVVV  333 (348)
Q Consensus       309 aev~hpF~aesegELsLsvGDyVVV  333 (348)
                      |.++|+|.+++++||||+.||+|.|
T Consensus         3 a~Alydy~a~~~~ELs~~~Gd~v~v   27 (56)
T d1gria1           3 AIAKYDFKATADDELSFKRGDILKV   27 (56)
T ss_dssp             EEECSCBCCCSSSCCCBCTTCEEEC
T ss_pred             EEEeeCCCCCCCCCcCCCCCCEEEE
Confidence            7899999999999999999999953

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.45  E-value=0.00077  Score=49.17  Aligned_cols=29  Identities=24%  Similarity=0.480  Sum_probs=26.1

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      .+.|+++|.++.+.||+|.+||.|.|-.-
T Consensus         9 ~~~al~~y~~~~~~eLs~~~Gd~i~Vl~~   37 (80)
T d1ue9a_           9 IAQVTSAYVASGSEQLSLAPGQLILILKK   37 (80)
T ss_dssp             EEEECSCCCCCSTTBCCCCTTCEEEEEEE
T ss_pred             EEEECcCCCCCCCCEeeEcCCCEEEEEEE
Confidence            68999999999999999999999987543

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.41  E-value=0.0015  Score=47.80  Aligned_cols=32  Identities=19%  Similarity=0.285  Sum_probs=28.8

Q ss_pred             eeeEEecccCCCCCCceeeeeeCCEEEEEeec
Q 018995          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVH  337 (348)
Q Consensus       306 yFlaev~hpF~aesegELsLsvGDyVVVRqVs  337 (348)
                      -+.++|+++|.++.+.||+|..||+|.|-+..
T Consensus        10 ~~~~~alydy~a~~~~ELs~~~Gd~i~vl~~~   41 (74)
T d1j3ta_          10 NLKAQALCSWTAKKDNHLNFSKHDIITVLEQQ   41 (74)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEEC
T ss_pred             CeEEEEccCCCCCCCCEecCCCCCEEEEEEcc
Confidence            36799999999999999999999999987753

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.41  E-value=0.00079  Score=46.92  Aligned_cols=29  Identities=24%  Similarity=0.276  Sum_probs=25.7

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      .+.|+++|+++.++||||..||.|.|-+.
T Consensus         2 ~~~Alydy~~~~~~eLs~~~Gd~i~v~~~   30 (58)
T d1jo8a_           2 WATAEYDYDAAEDNELTFVENDKIINIEF   30 (58)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEEC
T ss_pred             EEEEccCCCCCCcCCcCCCCCCEEEEEEE
Confidence            37899999999999999999999977554

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.39  E-value=0.002  Score=48.50  Aligned_cols=30  Identities=23%  Similarity=0.262  Sum_probs=26.4

Q ss_pred             eeeEEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       306 yFlaev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      ...+.++++|+++.+.||+|..||.|.|-+
T Consensus        34 ~~~~~Alydy~a~~~~ELsf~~Gd~i~Vl~   63 (98)
T d1udla_          34 VCQVIAMYDYAANNEDELSFSKGQLINVMN   63 (98)
T ss_dssp             SEEEEESSCCCCSSTTSCCCCTTCEEEECB
T ss_pred             ccEEEEccCCCCCCCCEeeEcCCCEEEEeE
Confidence            345789999999999999999999998854

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.36  E-value=0.0013  Score=45.94  Aligned_cols=30  Identities=13%  Similarity=0.333  Sum_probs=26.8

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEeec
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRKVH  337 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRqVs  337 (348)
                      +++++|+|.++.++||||..||.|.|-...
T Consensus         3 ~v~Alydy~~~~~~eLs~~~Gd~i~v~~~~   32 (57)
T d1ckaa_           3 YVRALFDFNGNDEEDLPFKKGDILRIRDKP   32 (57)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECS
T ss_pred             EEEECCCCCcCCcCCcCCCCCCEEEEEEEc
Confidence            478999999999999999999999987543

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.36  E-value=0.001  Score=46.23  Aligned_cols=28  Identities=25%  Similarity=0.299  Sum_probs=24.4

Q ss_pred             EEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          309 GEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       309 aev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      .-++++|++++++|||+..||+|.|-+-
T Consensus         3 ~vAl~dy~~~~~~eLs~~~Gd~v~v~~~   30 (55)
T d1u06a1           3 VLALYDYQEKSPREVTMKKGDILTLLNS   30 (55)
T ss_dssp             EEECSCBCCCSTTBCCBCTTCEEEEEEC
T ss_pred             EEECCCCCCCCcCCccCCCCCEEEEeEE
Confidence            4579999999999999999999888543

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.29  E-value=0.0012  Score=46.40  Aligned_cols=28  Identities=14%  Similarity=0.189  Sum_probs=25.5

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      .|+|+++|.|+.++||||..||.|.|-.
T Consensus         3 ~a~alydf~a~~~~ELs~~~Gd~i~v~~   30 (59)
T d1i07a_           3 YAKSKYDFVARNSSELSVMKDDVLEILD   30 (59)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEECG
T ss_pred             EEEEccCCCCCCCCeeeEcCCCEEEEEE
Confidence            4899999999999999999999998743

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

Probab=96.28  E-value=0.0012  Score=46.41  Aligned_cols=30  Identities=13%  Similarity=0.304  Sum_probs=26.6

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEeec
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRKVH  337 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRqVs  337 (348)
                      ++.++|+|.+++++||||..||.|.|-...
T Consensus         4 ~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~   33 (58)
T d1sema_           4 FVQALFDFNPQESGELAFKRGDVITLINKD   33 (58)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECS
T ss_pred             EEEECCCCCcCCcCCcCCCCCCEEEEeEEc
Confidence            578999999999999999999999886543

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.27  E-value=0.0015  Score=45.65  Aligned_cols=30  Identities=20%  Similarity=0.258  Sum_probs=26.8

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEeec
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRKVH  337 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRqVs  337 (348)
                      +++++++|.++.++|||+..||.|.|-...
T Consensus         3 yarAlydy~~~~~~eLs~~~Gd~i~v~~~~   32 (57)
T d1utia_           3 WARALYDFEALEEDELGFRSGEVVEVLDSS   32 (57)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEECC
T ss_pred             EEEECcCCCCCCcCCcCCCCCCEEEEeEEc
Confidence            589999999999999999999999886543

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.21  E-value=0.0012  Score=47.68  Aligned_cols=31  Identities=16%  Similarity=0.310  Sum_probs=27.8

Q ss_pred             ceeeEEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       305 ~yFlaev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      ..++++++++|.++.++||||..||+|.|-+
T Consensus         5 ~l~~~~Alydf~~~~~~eLs~~~Gd~i~vl~   35 (71)
T d1u5sa1           5 VLHVVQTLYPFSSVTEEELNFEKGETMEVIE   35 (71)
T ss_dssp             SSSEEEESSCCCCCSSSBCCCCSSCCEEEEE
T ss_pred             ccEEEEECccCCCCCCCEeeECCCCEEEEEE
Confidence            4578999999999999999999999997754

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.13  E-value=0.0016  Score=48.40  Aligned_cols=31  Identities=35%  Similarity=0.400  Sum_probs=27.9

Q ss_pred             ceeeEEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       305 ~yFlaev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      ..|.+.++++|.++.++||+|..||.|.|=.
T Consensus        11 ~~~~~~Alydy~a~~~~ELs~~~Gd~i~Vl~   41 (83)
T d1bb9a_          11 FMFKVQAQHDYTATDTDELQLKAGDVVLVIP   41 (83)
T ss_dssp             CCEEEEESSCBCCSSTTBCCBCTTCEEEEEC
T ss_pred             CCEEEEEceeECCCCCCEecCcCCCEEEEEE
Confidence            4477999999999999999999999999853

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.04  E-value=0.002  Score=47.65  Aligned_cols=25  Identities=24%  Similarity=0.545  Sum_probs=23.8

Q ss_pred             EecccCCCCCCceeeeeeCCEEEEE
Q 018995          310 EVVHPYQAESDVELTLSVGDYVVVR  334 (348)
Q Consensus       310 ev~hpF~aesegELsLsvGDyVVVR  334 (348)
                      +|+++|.++++.||+|..||+|.|=
T Consensus         9 rAlydy~~~~~~ELs~~~Gd~v~Vl   33 (93)
T d1uffa_           9 RALYPFEARNHDEMSFNSGDIIQVD   33 (93)
T ss_dssp             EESSCBCCCSSSCCCBCTTCEEEEC
T ss_pred             EECccCCCCCCCCccCcCCCEEEEE
Confidence            9999999999999999999999875

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.91  E-value=0.0023  Score=45.72  Aligned_cols=29  Identities=17%  Similarity=0.122  Sum_probs=25.6

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      .-..++|+|.+++++||+|..||.|.|-.
T Consensus         9 ~~v~Alydy~a~~~~eLs~~~Gd~i~v~~   37 (67)
T d1awwa_           9 KKVVALYDYMPMNANDLQLRKGDEYFILE   37 (67)
T ss_dssp             CEEEBSSCCCCSSSSSCCCCSSCEEECCC
T ss_pred             EEEEECcCCCCCCcCCcCCCCCCEEEEEE
Confidence            44578999999999999999999998854

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.91  E-value=0.0022  Score=44.86  Aligned_cols=28  Identities=21%  Similarity=0.395  Sum_probs=24.9

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      +..++++|+++.++||+|..||.|.|=.
T Consensus         8 ~~~al~dy~a~~~~eLs~~~Gd~i~v~~   35 (62)
T d2iima1           8 LVIALHSYEPSHDGDLGFEKGEQLRILE   35 (62)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEE
T ss_pred             EEEECCCCCcCCcCCcCCCCCCEEEEeE
Confidence            3668999999999999999999998754

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.90  E-value=0.0023  Score=44.50  Aligned_cols=28  Identities=21%  Similarity=0.419  Sum_probs=25.2

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      .++++|+|.++++.|||+..||.|.|=.
T Consensus         3 yv~Alydy~~~~~~eLs~~~Gd~i~v~~   30 (56)
T d1gcqa_           3 YVQALFDFDPQEDGELGFRRGDFIHVMD   30 (56)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEE
T ss_pred             EEEECcCCCcCCcCCcCCCCCCEEEEEE
Confidence            3689999999999999999999998754

>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: Formin-binding protein 1, FNBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.17  Score=41.06  Aligned_cols=170  Identities=16%  Similarity=0.144  Sum_probs=90.0

Q ss_pred             hhhhhhhhhhccCCCC----CCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcC--------------
Q 018995           85 GTKLSEDSRKYGSDNT----CTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLG--------------  146 (348)
Q Consensus        85 ~~KLaeDc~KYG~en~----~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~G--------------  146 (348)
                      +.+|..=|.+|.....    .....++.++-..+-..-..+=..+..+-..|.++|.+||+.++.-              
T Consensus        43 ak~L~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~h~~~a~~l~~~i~~~l~~~~~~~~~~~K~~~~~~~k  122 (288)
T d2efla1          43 AKQLRNLSKKYQPKKNSKEEEEYKYTSCKAFISNLNEMNDYAGQHEVISENMASQIIVDLARYVQELKQERKSNFHDGRK  122 (288)
T ss_dssp             HHHHHHHHHHTSCC-------CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhccccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555556643211    1122356777666666666666778888888999999999887631              


Q ss_pred             ------CCchhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCChhhhhh----hHHHHHhHHH----HHHHHHHhcH
Q 018995          147 ------APLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALK----LDAAEVKLHD----LKSNMAILGK  212 (348)
Q Consensus       147 ------aPLEDARhLaqRYdRmRQEaE~Qa~eV~rRq~k~res~gn~e~~~K----Lq~AE~Kl~E----Lks~Ma~LGK  212 (348)
                            .-.....-...+|++...|+|.......+.....   ..++....|    ++.+..++++    .+..+..+-+
T Consensus       123 ~~k~~~~~~~~l~k~k~~Y~~~~~e~e~~~~~~~~~~~~~---~~~~~~~~K~~~k~~~~~~~~~~a~~~Y~~~v~~~n~  199 (288)
T d2efla1         123 AQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADI---NVTKADVEKARQQAQIRHQMAEDSKADYSSILQKFNH  199 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT---TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  1111233345567777777766555554443221   213333333    2233333332    2333333321


Q ss_pred             HH----HHHHHHHHHHhhHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHH
Q 018995          213 EA----AAAMAAVESQQQRLTLQRLIAMV-------EAERTYHQRVLQILDQLEGE  257 (348)
Q Consensus       213 EA----~aAM~aVEaQQQrlTlQRLiaMV-------eAER~YHqrv~~ILd~L~~e  257 (348)
                      .=    ...|..+-.+-|.+-.+|+..|.       ..+..++..+-..++.|...
T Consensus       200 ~~~~~~~~~~~~~~~~~q~~e~~r~~~~k~~l~~~~~~~~~~~~~~~~~~~~l~~~  255 (288)
T d2efla1         200 EQHEYYHTHIPNIFQKIQEMEERRIVRMGESMKTYAEVDRQVIPIIGKCLDGIVKA  255 (288)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            10    23355555566666666666554       45666677776666666654

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.86  E-value=0.0022  Score=44.86  Aligned_cols=27  Identities=19%  Similarity=0.364  Sum_probs=24.7

Q ss_pred             EEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          309 GEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       309 aev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      +.++++|.|+.+.|||+..||.|.|-.
T Consensus         4 ~~Alydy~a~~~~ELs~~~Gd~v~vl~   30 (58)
T d1oota_           4 AVALYSFAGEESGDLPFRKGDVITILK   30 (58)
T ss_dssp             EEESSCBCCCSTTBCCBCTTCEEEEEE
T ss_pred             EEEccCCCCCCCCCccCCCCCEEEEEE
Confidence            689999999999999999999997754

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.86  E-value=0.0028  Score=46.71  Aligned_cols=27  Identities=19%  Similarity=0.201  Sum_probs=23.9

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEE
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVR  334 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVR  334 (348)
                      +..++++|.++.+.||||.+||.|.|=
T Consensus        15 ~~~Alydy~a~~~~ELs~~~Gd~i~vl   41 (79)
T d1uhca_          15 VYFAVYTFKARNPNELSVSANQKLKIL   41 (79)
T ss_dssp             CEEESSCBCCCSSSBCCBCTTCEEEEE
T ss_pred             EEEECccCCCCCCCCccCCCCCEEEEE
Confidence            346899999999999999999999763

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.80  E-value=0.0013  Score=45.99  Aligned_cols=27  Identities=19%  Similarity=0.239  Sum_probs=23.9

Q ss_pred             EEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          309 GEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       309 aev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      ..++|+|++++++||||..||.|.|-.
T Consensus         6 ~rAl~df~~~~~~eLs~~~Gd~i~v~~   32 (60)
T d1arka_           6 FRAMYDYMAADADEVSFKDGDAIINVQ   32 (60)
T ss_dssp             EECCSCCCCSSSSBCCCCTTCEECCSE
T ss_pred             EEECccCCCCCCCCcCCCCCCEEEEEE
Confidence            478999999999999999999996543

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.75  E-value=0.0022  Score=44.30  Aligned_cols=25  Identities=28%  Similarity=0.360  Sum_probs=22.9

Q ss_pred             ecccCCCCCCceeeeeeCCEEEEEe
Q 018995          311 VVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       311 v~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      |+++|.|+.+.||||..||.|.|-+
T Consensus         5 al~~y~a~~~~eLs~~~Gd~v~vl~   29 (53)
T d1wlpb1           5 AIKAYTAVEGDEVSLLEGEAVEVIH   29 (53)
T ss_dssp             ECSCBCCCSSSBCCBCTTCEEEEEE
T ss_pred             EeeeECCCCCCEecCCCCCEEEEEe
Confidence            8999999999999999999887754

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.75  E-value=0.0028  Score=44.71  Aligned_cols=29  Identities=24%  Similarity=0.322  Sum_probs=25.6

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      +..++|+|.++.++||+|..||.|.|-+-
T Consensus         6 ~vvAlydy~~~~~~eLs~~~Gd~i~v~~~   34 (65)
T d1qcfa1           6 IVVALYDYEAIHHEDLSFQKGDQMVVLEE   34 (65)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEC
T ss_pred             EEEECCcCCCCCcCccCCCCCCEEEEEEE
Confidence            56689999999999999999999988553

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.75  E-value=0.002  Score=46.71  Aligned_cols=32  Identities=22%  Similarity=0.295  Sum_probs=27.3

Q ss_pred             ceeeEEecccCCCCCCceeeeeeCCEEE-EEee
Q 018995          305 GYFLGEVVHPYQAESDVELTLSVGDYVV-VRKV  336 (348)
Q Consensus       305 ~yFlaev~hpF~aesegELsLsvGDyVV-VRqV  336 (348)
                      .+..+.++++|.++.+.||+|..||.|. +.+.
T Consensus         9 p~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~   41 (72)
T d1ugva_           9 PFRKAKALYACKAEHDSELSFTAGTVFDNVHPS   41 (72)
T ss_dssp             SCCCEEESSCBCCCSSSBCCBCTTCEEBSCCBC
T ss_pred             CCEEEEEcccCCCCCCCEecCCCCCEEEEeecc
Confidence            4567899999999999999999999985 4443

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.70  E-value=0.0028  Score=44.42  Aligned_cols=27  Identities=26%  Similarity=0.377  Sum_probs=24.6

Q ss_pred             EEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          309 GEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       309 aev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      +.++++|.++.++||||..||.|.|=.
T Consensus         5 ~~Alydy~~~~~~eLsf~~Gd~i~v~~   31 (58)
T d1uj0a_           5 VRALYDFEAVEDNELTFKHGELITVLD   31 (58)
T ss_dssp             EEESSCBCCCSTTBCCBCTTCEEEEEE
T ss_pred             EEECCCCCCCCcCCcCCCCCCEEEEeE
Confidence            578999999999999999999998744

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.67  E-value=0.0039  Score=44.67  Aligned_cols=31  Identities=19%  Similarity=0.394  Sum_probs=25.3

Q ss_pred             eeeEEecccCCCCC-CceeeeeeCCEEEE-Eee
Q 018995          306 YFLGEVVHPYQAES-DVELTLSVGDYVVV-RKV  336 (348)
Q Consensus       306 yFlaev~hpF~aes-egELsLsvGDyVVV-RqV  336 (348)
                      ..++.|+++|.+++ ++||||..||.|.| .+.
T Consensus         5 ~~~~~Alydy~~~~~~~ELs~~~Gd~i~vl~~~   37 (67)
T d2v1ra1           5 LEFARALYDFVPENPEMEVALKKGDLMAILSKK   37 (67)
T ss_dssp             CEEEEESSCBCCSSTTTBCCBCTTCEEEEEEEE
T ss_pred             CEEEEECccCCCCCCCCEeCCCCCCEEEEEEee
Confidence            34699999999976 57999999999865 443

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.64  E-value=0.0026  Score=43.75  Aligned_cols=25  Identities=16%  Similarity=0.339  Sum_probs=23.0

Q ss_pred             ecccCCCCCCceeeeeeCCEEEEEe
Q 018995          311 VVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       311 v~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      ++|+|+++.++||||..||.|.|=.
T Consensus         5 Al~dy~a~~~~eLs~~~Gd~i~v~~   29 (57)
T d1efna_           5 ALYDYEAITEDDLSFHKGEKFQILN   29 (57)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEEEEEE
T ss_pred             ECCCCCCCCcCCcCCCCCCEEEEEE
Confidence            7999999999999999999998743

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.63  E-value=0.0034  Score=47.23  Aligned_cols=30  Identities=23%  Similarity=0.435  Sum_probs=27.4

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      |...++++|.++.++||+|..||.|.|-+-
T Consensus         4 ~~~raly~y~~~~~~eLs~~~Gd~i~V~~~   33 (83)
T d1phta_           4 YQYRALYDYKKEREEDIDLHLGDILTVNKG   33 (83)
T ss_dssp             EEEEECSCBCCSSTTBCCBCTTCEEEEEHH
T ss_pred             CEEEEcCccCCCCCCcccccCCCEEEEEec
Confidence            567899999999999999999999999753

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.0037  Score=44.40  Aligned_cols=26  Identities=23%  Similarity=0.376  Sum_probs=23.3

Q ss_pred             EEecccCCCCCCceeeeeeCCEEEEE
Q 018995          309 GEVVHPYQAESDVELTLSVGDYVVVR  334 (348)
Q Consensus       309 aev~hpF~aesegELsLsvGDyVVVR  334 (348)
                      ..++|+|.++++.|||+..||.|.|=
T Consensus         7 v~Alydy~a~~~~ELs~~~Gd~i~vl   32 (63)
T d1ycsb2           7 IYALWDYEPQNDDELPMKEGDCMTII   32 (63)
T ss_dssp             EEESSCBCCSSTTBCCBCSSCEEEEC
T ss_pred             EEEeeCCCCCCCCCcCCCCCCEEEEE
Confidence            34799999999999999999999773

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.55  E-value=0.0034  Score=45.18  Aligned_cols=26  Identities=12%  Similarity=0.257  Sum_probs=23.6

Q ss_pred             EEecccCCCCCCceeeeeeCCEEEEE
Q 018995          309 GEVVHPYQAESDVELTLSVGDYVVVR  334 (348)
Q Consensus       309 aev~hpF~aesegELsLsvGDyVVVR  334 (348)
                      +.++|+|+++.+.||||..||.|.|-
T Consensus         9 ~~Alydy~a~~~~ELs~~~Gd~i~vl   34 (71)
T d1k9aa1           9 CIAKYNFHGTAEQDLPFCKGDVLTIV   34 (71)
T ss_dssp             EEESSCBCCSSSSBCCBCTTCEEEEE
T ss_pred             EEEccCCCCCCCCCccCCCCCEEEEe
Confidence            77999999999999999999998553

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.50  E-value=0.0036  Score=47.38  Aligned_cols=28  Identities=29%  Similarity=0.339  Sum_probs=24.9

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEE
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVR  334 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVR  334 (348)
                      .+..|+|+|.|+.++||||..||.|.|-
T Consensus        18 ~~~~a~~~f~a~~~~eLs~~~Gd~v~vl   45 (92)
T d1ug1a_          18 KLFQAERNFNAAQDLDVSLLEGDLVGVI   45 (92)
T ss_dssp             GEEEESSCCCCCSSSCCCCCTTCEEEEE
T ss_pred             eEEEEcCCcCCCCCCeEEEecccEEEEE
Confidence            3558999999999999999999999664

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.49  E-value=0.0036  Score=44.24  Aligned_cols=29  Identities=24%  Similarity=0.368  Sum_probs=25.6

Q ss_pred             EEecccCCCCCCceeeeeeCCEEEEEeec
Q 018995          309 GEVVHPYQAESDVELTLSVGDYVVVRKVH  337 (348)
Q Consensus       309 aev~hpF~aesegELsLsvGDyVVVRqVs  337 (348)
                      ..++++|.++.++||||..||+|.|-.-.
T Consensus         8 v~Aly~y~a~~~~eLsf~~Gd~i~vl~~~   36 (62)
T d1k4us_           8 VEALFSYEATQPEDLEFQEGDIILVLSKV   36 (62)
T ss_dssp             EECCSCBCCCSSSBCCBCSSCEEEEEEES
T ss_pred             EEECCCCCCCCcCCcCCCCCCEEEEeEEc
Confidence            47899999999999999999999886543

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

Probab=95.33  E-value=0.0038  Score=42.87  Aligned_cols=25  Identities=20%  Similarity=0.216  Sum_probs=22.4

Q ss_pred             EecccCCCCCCceeeeeeCCEEEEE
Q 018995          310 EVVHPYQAESDVELTLSVGDYVVVR  334 (348)
Q Consensus       310 ev~hpF~aesegELsLsvGDyVVVR  334 (348)
                      .++|+|+++.++||||..||.|.|-
T Consensus         2 ~Alydy~a~~~~eLs~~~Gd~~~vl   26 (53)
T d2rn8a1           2 IALYDYQTNDPQELALRCDEEYYLL   26 (53)
T ss_dssp             EESSCCCCSSTTBCCCCTTCEEEEC
T ss_pred             EEeeeECCCCCCeeeECCCCEEEEe
Confidence            3789999999999999999998663

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.23  E-value=0.0024  Score=46.25  Aligned_cols=29  Identities=17%  Similarity=0.193  Sum_probs=26.0

Q ss_pred             eeEEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          307 FLGEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       307 Flaev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      +.++++|+|.++++.||||..||.|.|-.
T Consensus         7 ~~v~Aly~f~a~~~~eLsf~~Gd~i~v~~   35 (71)
T d2hspa_           7 CAVKALFDYKAQREDELTFIKSAIIQNVE   35 (71)
T ss_dssp             SCEECCSCCCCSSSSSCCCCTTCEEBSCC
T ss_pred             EEEEEcccCCcCCcCCccCCCCCEEEEEE
Confidence            45899999999999999999999998754

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.02  E-value=0.0077  Score=43.44  Aligned_cols=29  Identities=31%  Similarity=0.352  Sum_probs=25.8

Q ss_pred             eEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          308 LGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       308 laev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      ...|+++|.++.+.||+|..||.|.|-.-
T Consensus         9 ~~~al~dy~~~~~~eLs~~~Gd~i~vl~~   37 (74)
T d1wfwa_           9 TMTVIKDYYALKENEICVSQGEVVQVLAV   37 (74)
T ss_dssp             EEECCSCBCCCSSSCCCBCTTCEEEEEEE
T ss_pred             EEEEeEEECCCCCCCccCccCCEEEEEEE
Confidence            55789999999999999999999988643

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.98  E-value=0.0055  Score=43.11  Aligned_cols=24  Identities=13%  Similarity=0.441  Sum_probs=22.3

Q ss_pred             ecccCCCCCCceeeeeeCCEEEEE
Q 018995          311 VVHPYQAESDVELTLSVGDYVVVR  334 (348)
Q Consensus       311 v~hpF~aesegELsLsvGDyVVVR  334 (348)
                      ++|+|+++.++||++..||.|.|=
T Consensus         7 Alydf~~~~~~eLs~~~Gd~i~v~   30 (64)
T d1fmka1           7 ALYDYESRTETDLSFKKGERLQIV   30 (64)
T ss_dssp             ESSCBCCCSSSBCCBCTTCEEEES
T ss_pred             ECccCCCcCcCCcCCCCCCEEEEE
Confidence            699999999999999999998774

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.90  E-value=0.0065  Score=42.16  Aligned_cols=27  Identities=33%  Similarity=0.444  Sum_probs=24.3

Q ss_pred             EEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          309 GEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       309 aev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      ..|+++|.++.+.|||+..||.|.|=+
T Consensus         5 ~~al~dy~~~~~~eLs~~~Gd~i~vl~   31 (58)
T d1ng2a1           5 YRAIADYEKTSGSEMALSTGDVVEVVE   31 (58)
T ss_dssp             EECSSCBCCSSTTCCCBCTTCEEEEEE
T ss_pred             EEECccCcCCCCCCcCCCCCCEEEEEE
Confidence            478999999999999999999998743

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.73  E-value=0.0093  Score=41.42  Aligned_cols=24  Identities=21%  Similarity=0.343  Sum_probs=22.1

Q ss_pred             EecccCCCCCCceeeeeeCCEEEE
Q 018995          310 EVVHPYQAESDVELTLSVGDYVVV  333 (348)
Q Consensus       310 ev~hpF~aesegELsLsvGDyVVV  333 (348)
                      -++|+|.|+.++|||+..||.|.|
T Consensus         4 vAlydy~a~~~~eLs~~~Gd~i~v   27 (57)
T d1opka1           4 VALYDFVASGDNTLSITKGEKLRV   27 (57)
T ss_dssp             EESSCBCCCSTTBCCBCTTCEEEE
T ss_pred             EECccCCCCCcCCcCCCCCCEEEE
Confidence            589999999999999999999944

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.39  E-value=0.017  Score=41.71  Aligned_cols=30  Identities=20%  Similarity=0.450  Sum_probs=25.3

Q ss_pred             ceeeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       305 ~yFlaev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      ..|+  ++|+|.++.++||||..||.|.|=+.
T Consensus         9 ~~~v--Al~~y~~~~~~eLs~~~Gd~v~vl~~   38 (69)
T d1uhfa_           9 EEYI--ALYPYSSVEPGDLTFTEGEEILVTQK   38 (69)
T ss_dssp             EEEE--CSSCBCCSSSSBCCBCTTCEEEECEE
T ss_pred             cEEE--ECccCCCCCcCCcCCCCCCEEEEEEe
Confidence            4454  69999999999999999999987543

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.30  E-value=0.012  Score=41.89  Aligned_cols=28  Identities=18%  Similarity=0.210  Sum_probs=24.6

Q ss_pred             EEecccCCCCCCceeeeeeCCEEEEEee
Q 018995          309 GEVVHPYQAESDVELTLSVGDYVVVRKV  336 (348)
Q Consensus       309 aev~hpF~aesegELsLsvGDyVVVRqV  336 (348)
                      -.++++|.+..++||||..||.|.|-.-
T Consensus         5 v~Alydf~a~~~~eLs~~~Gd~i~v~~~   32 (67)
T d1gl5a_           5 VVAMYDFQATEAHDLRLERGQEYIILEK   32 (67)
T ss_dssp             EEECSCBCCSSSSBCCBCTTCEEEEEEC
T ss_pred             EEECCCCCCCCcCCcCCCCCCEEEEEEe
Confidence            3579999999999999999999987543

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.25  E-value=0.023  Score=43.45  Aligned_cols=30  Identities=27%  Similarity=0.421  Sum_probs=23.2

Q ss_pred             eeEEecccCCCC------CCceeeeeeCCEEEE-Eee
Q 018995          307 FLGEVVHPYQAE------SDVELTLSVGDYVVV-RKV  336 (348)
Q Consensus       307 Flaev~hpF~ae------segELsLsvGDyVVV-RqV  336 (348)
                      -+..++++|+++      +|+||+|..||+|.| .++
T Consensus        18 ~~~~Alydy~~~~~~~~~~e~ELsf~~Gd~i~v~~~~   54 (96)
T d1wiea_          18 HLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDM   54 (96)
T ss_dssp             EEEEESSCCCGGGSSCSCTTTBCCCCTTCEEEEESSC
T ss_pred             eEEEEeeeecCcccCCCCCCcEeeEcCCCEEEEEEee
Confidence            455689999875      479999999999854 444

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.05  E-value=0.014  Score=44.65  Aligned_cols=26  Identities=27%  Similarity=0.322  Sum_probs=23.7

Q ss_pred             EecccCCCCCCceeeeeeCCEEEEEe
Q 018995          310 EVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       310 ev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      -|+++|.++.+.||+|..||.|.|=+
T Consensus        18 ~alydy~a~~~dELs~~~Gd~i~Vl~   43 (118)
T d1ng2a2          18 VAIKAYTAVEGDEVSLLEGEAVEVIH   43 (118)
T ss_dssp             EESSCBCCCSTTBCCBCTTCEEEEEE
T ss_pred             EECcCCCCCCCCEecCCCCCEEEEeE
Confidence            49999999999999999999998843

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.78  E-value=0.039  Score=39.65  Aligned_cols=26  Identities=19%  Similarity=0.326  Sum_probs=22.3

Q ss_pred             eEEecccCCCC-CCceeeeeeCCEEEE
Q 018995          308 LGEVVHPYQAE-SDVELTLSVGDYVVV  333 (348)
Q Consensus       308 laev~hpF~ae-segELsLsvGDyVVV  333 (348)
                      -..++++|.++ .+.||+|..||.|.|
T Consensus         9 ~~~Alydy~~~~~~deLsf~~Gd~i~v   35 (72)
T d1spka_           9 KVKTIFPHTAGNNKTLLSFAQGDVLTL   35 (72)
T ss_dssp             EEECSSCBCCSSCSSBCCBCTTCEEEE
T ss_pred             EEEEeeccCCCCCCCEeeEcCCCEEEE
Confidence            35899999986 468999999999966

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.68  E-value=0.038  Score=42.75  Aligned_cols=31  Identities=23%  Similarity=0.162  Sum_probs=27.8

Q ss_pred             ceeeEEecccCCCCCCceeeeeeCCEEEEEe
Q 018995          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRK  335 (348)
Q Consensus       305 ~yFlaev~hpF~aesegELsLsvGDyVVVRq  335 (348)
                      ....|.++++|.+.+++||+|..||.|.|-.
T Consensus        20 ~~~~~~Alydy~~~~~~eL~f~~Gd~i~Vl~   50 (106)
T d1i1ja_          20 PISMAVALQDYMAPDCRFLTIHRGQVVYVFS   50 (106)
T ss_dssp             CSEEEEESSCBCCSSTTBCCBCTTCEEEEEE
T ss_pred             eeeEEEEccccCCCCCCCccCCCCCEEEEEE
Confidence            4467999999999999999999999998853

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.22  E-value=0.13  Score=36.89  Aligned_cols=24  Identities=25%  Similarity=0.300  Sum_probs=19.3

Q ss_pred             cccCCCCCCceeeeeeCCEEEE-Ee
Q 018995          312 VHPYQAESDVELTLSVGDYVVV-RK  335 (348)
Q Consensus       312 ~hpF~aesegELsLsvGDyVVV-Rq  335 (348)
                      +-||.++..+||||..||.|.| ++
T Consensus        16 ~~~~~~~~~~eLsf~~GD~i~Vl~~   40 (69)
T d1gcqc_          16 IPPPPGAFGPFLRLNPGDIVELTKA   40 (69)
T ss_dssp             SSCCGGGCSCBCCBCTTCEEEEEEC
T ss_pred             cCCCCCCCCCEeeEcCCCEEEEEEE
Confidence            4466778899999999999954 54

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.48  E-value=0.13  Score=37.94  Aligned_cols=28  Identities=25%  Similarity=0.405  Sum_probs=23.6

Q ss_pred             eeEEecccCCCCCC-----ceeeeeeCCEEEEE
Q 018995          307 FLGEVVHPYQAESD-----VELTLSVGDYVVVR  334 (348)
Q Consensus       307 Flaev~hpF~aese-----gELsLsvGDyVVVR  334 (348)
                      |.-+++++|+++.+     .|||+..||.|.|-
T Consensus         2 ~~vrAlydy~~~~d~~~~~~eLsf~kGdil~V~   34 (96)
T d1kjwa1           2 FYIRALFDYDKTKDCGFLSQALSFRFGDVLHVI   34 (96)
T ss_dssp             EEEEESSCBCHHHHHCCCSSBCCBCTTCEEEEE
T ss_pred             EEEEEcccCcCCcCCCCCCccceEcCCCEEEEe
Confidence            67789999999864     59999999999554

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=81.59  E-value=0.42  Score=36.68  Aligned_cols=29  Identities=17%  Similarity=0.276  Sum_probs=26.1

Q ss_pred             ceeeEEecccCCCCCCce-------eeeeeCCEEEE
Q 018995          305 GYFLGEVVHPYQAESDVE-------LTLSVGDYVVV  333 (348)
Q Consensus       305 ~yFlaev~hpF~aesegE-------LsLsvGDyVVV  333 (348)
                      .-|...+++.|++..+.|       ||+..||.|.|
T Consensus        20 ~~~~vrAlydY~~~~dd~~P~~~~~LsF~~GDii~v   55 (96)
T d1t0ha_          20 VAFAVRTNVRYSAAQEDDVPVPGMAISFEAKDFLHV   55 (96)
T ss_dssp             CCEEEEESSCBCCCGGGCCSSTTCBCCBCTTCEEEE
T ss_pred             ccEEEEEeeccCCCCCCCCccccccccCCCCCEEEE
Confidence            347789999999999999       99999999986