Citrus Sinensis ID: 019028

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------
Protein Sequence
MASKLCDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVDSSAVKQGNGGVVNFLDEDRYLDHVDGRSGDVSREEAEAASWLLPIPKVADLNTGQAQEPYVFPDMDPYLDLDYGHVDTKLEAQEQNSSGTDGVVPVQTRNVNANGHLVNDACFDLDFPGSKSYGYGYNSHSQCLSQSVSSSSLEVGVVPDGSSAMTDITNPYGKGVGVEAGNQTVVQISAADREARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDLEVEPADRSSSIYGFGIVPSF
Secondary Structure (PSIPRED)
cccccccccccccEEEEEccccccccHHHHHHHHcccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHcccEEHHHHHccccEEEEEHHHHHHHHHHccHHcccccHHHHccccEEEEcccccccccccccccccccccccccHcccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccHHHEEEHHHHHHHHHcccccccEEEEEccccccccccccccccccccccc
Coil and Loop (DISEMBL)
masklcdsckSATATVFcradsaflcvnCDTKIHAANKLASRHARVWVCEvceqapahvtcKADAAALCVTcdrdihsanplarrhervpvtpfydsvdssavkqgnggvvnfldedryldhvdgrsgdvsrEEAEAAswllpipkvadlntgqaqepyvfpdmdpyldldyghvdtkleaqeqnssgtdgvvpvqtrnvnanghlvndacfdldfpgsksygygynshsqclsqsvsssslevgvvpdgssamtditnpygkgvgveagnqTVVQISAADREARVLRYREKRKNRKFEKTIRYASRKAYAEMRprikgrfakrtdlevepadrsssiygfgivpsf
Flexible Loop (DISEMBL)
masklcdsckSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCVTCDRDIHsanplarrhervpVTPFydsvdssavkqgNGGVVNFLDEDRYLDHVDGRSGDVSREEAEAASWLLPIPKVADLNTGQAQEPYVFPDMDPYLDLDYGHVDTKLEAqeqnssgtdgvvPVQTRNVNANGHLVNDACFDLDFPGSKSYGYGYNSHSQCLSQSVSSSSLEVGVVPDGSSAMTDITNPYGKGVGVEAGNQTvvqisaadrearvlryrekrknrkfektiryasrkayaemrprikgrfakrtdlevepadrsssiygfgivpsf
Low Complexity Region (SEG)
MASKLCDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVDSSAVKQGNGGVVNFLDEDRYLDHVDGRSGDVSREEAEAASWLLPIPKVADLNTGQAQEPYVFPDMDPYLDLDYGHVDTKLEAQEQNSSGTDGVVPVQTRNVNANGHLVNDACFDLDFPGSKSYGYGYNshsqclsqsvsssslEVGVVPDGSSAMTDITNPYGKGVGVEAGNQTVVQISAADREARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDLEVEPADRSSSIYGFGIVPSF
Disordered region (IsUnstruct)
*******SCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCVTCDRDIHS*******************************VVNFLDEDRYLDH***************ASWLLPIPKVADLNTGQAQEPYVFPDMDPYLDLDYGHVDT**************VVPVQTRNVNANGHLVNDACFDLDFPGSKSYGYGYNSH****************************TNPYGKGVGVEAGNQTVVQISAADREARVLRY************IRY**********************************YGF******
Disordered Region (DISOPRED)
*ASKLCDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVDSSAVKQGNGGVVNFLDEDRYLDHVDGRSGDVSREEAEAASWLLPIPKVADLNTGQAQEPYVFPDMDPYLDLDYGHVDTKLEAQEQNSSGTDGVVPVQTRNVNANGHLVNDACFDLDFPGSK**********QCLSQSVSSSSLEVGVVPDGSSAMTDI**********************ADREARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAK****************GFGIVPSF
Disordered Region (DISEMBL)
**********SATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVDSSAVKQGNGGVVNFLDEDRYLDHVDG***********AASWLLPIPKVADLNTGQAQEPYVFPDMDPYLDLDYGHVDTKLEA********DGVVPVQTRNVNANGHLVNDACFDLDFPGSKSYGYGYNSH****************VVPDGSSAMTDITNPYGKGVGVEAGNQTVVQISAADREARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDLEVEPADRSSSIYGFGIVPSF
Disordered Region (DISPRO)
****LCDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVD***********************************AEAASWLLPIPKVADLNTGQAQEPYVFPDMDPYLDLDYGHVDTKLEAQEQNSSGTDGVVPVQTRNVNANGHLVNDACFDLDFPGSKSYGYGYNSHSQCLSQ**SSSSLEVGVVPD*SS*M**************************D*EARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTD*********************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASKLCDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVDSSAVKQGNGGVVNFLDEDRYLDHVDGRSGDVSREEAEAASWLLPIPKVADLNTGQAQEPYVFPDMDPYLDLDYGHVDTKLEAQEQNSSGTDGVVPVQTRNVNANGHLVNDACFDLDFPGSKSYGYGYNSHSQCLSQSVSSSSLEVGVVPDGSSAMTDITNPYGKGVGVEAGNQTVVQISAADREARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDLEVEPADRSSSIYGFGIVPSF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	347	2.2.26 [Sep-21-2011]
Q940T9	362	Zinc finger protein CONST	no	no	0.956	0.917	0.631	1e-111
Q9SK53	294	Zinc finger protein CONST	no	no	0.778	0.918	0.550	1e-88
Q9FHH8	355	Zinc finger protein CONST	no	no	0.942	0.921	0.484	3e-75
Q96502	347	Zinc finger protein CONST	no	no	0.916	0.916	0.444	1e-67
O50055	355	Zinc finger protein CONST	no	no	0.953	0.932	0.457	1e-67
Q39057	373	Zinc finger protein CONST	no	no	0.951	0.884	0.428	6e-67
Q9LUA9	373	Zinc finger protein CONST	no	no	0.896	0.833	0.281	7e-23
Q9SSE5	372	Zinc finger protein CONST	no	no	0.876	0.817	0.263	3e-22
Q9FDX8	395	Zinc finger protein HD1 O	no	no	0.345	0.303	0.485	9e-21
O23379	330	Putative zinc finger prot	no	no	0.864	0.909	0.265	1e-18

>sp|Q940T9|COL4_ARATH Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2

 Score =  400 bits (1027), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 238/377 (63%), Positives = 274/377 (72%), Gaps = 45/377 (11%)

Query: 1   MASKLCDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVT 60
           MASKLCDSCKSATA ++CR D+AFLC++CD+K+HAANKLASRHARVW+CEVCEQAPAHVT
Sbjct: 1   MASKLCDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVWMCEVCEQAPAHVT 60

Query: 61  CKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVDS-SAVKQGNGGVVNFLDEDRY 119
           CKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSV S  +VK      VNFLD D Y
Sbjct: 61  CKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVSSDGSVKH---TAVNFLD-DCY 116

Query: 120 LDHVDGRSGDVSREEAEAASW-LLPIPKVA---------------------DLNTGQAQE 157
              +DG +G    EE EAASW LLP PK                       ++NTGQ   
Sbjct: 117 FSDIDG-NGSREEEEEEAASWLLLPNPKTTTTATAGIVAVTSAEEVPGDSPEMNTGQQ-- 173

Query: 158 PYVFPDMDPYLDLDYGHVDTKLEAQEQNSSGTDGVVPVQTRNVNANGHLVNDACFDLDFP 217
            Y+F D DPYLDLDYG+VD K+E+ EQNSSGTDGVVPV+ R V      VN+ CF++DF 
Sbjct: 174 -YLFSDPDPYLDLDYGNVDPKVESLEQNSSGTDGVVPVENRTVRI--PTVNENCFEMDFT 230

Query: 218 GSK---SYGYGYNSHSQCLSQSVSSSSLEVGVVPDGSSAMTDITNPYGKGV--GVEAGNQ 272
           G     +YG GYN    C+S SVSSSS+EVGVVPDG S + D++ PYG     G + G Q
Sbjct: 231 GGSKGFTYGGGYN----CISHSVSSSSMEVGVVPDGGS-VADVSYPYGGPATSGADPGTQ 285

Query: 273 TVVQISAADREARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDL-EVEP 331
             V +++A+REARV+RYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTD  E   
Sbjct: 286 RAVPLTSAEREARVMRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDTNESND 345

Query: 332 ADRSSSIY-GFGIVPSF 347
                 I+ GFG+VP+F
Sbjct: 346 VVGHGGIFSGFGLVPTF 362

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SK53|COL3_ARATH Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1

 Score =  326 bits (836), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 179/325 (55%), Positives = 216/325 (66%), Gaps = 55/325 (16%)

Query: 2   ASKLCDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVTC 61
           +S+LCDSCKS  AT+FCRAD+AFLC +CD KIH ANKLASRH RVW+CEVCEQAPAHVTC
Sbjct: 4   SSRLCDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWLCEVCEQAPAHVTC 63

Query: 62  KADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVDSSAVKQGNGGVVNFLDEDRYLD 121
           KADAAALCVTCDRDIHSANPL+RRHERVP+TPFYD+V  +   +     VNF+DED    
Sbjct: 64  KADAAALCVTCDRDIHSANPLSRRHERVPITPFYDAVGPA---KSASSSVNFVDED---- 116

Query: 122 HVDGRSGDVSREEAEAASWLLPIPKVADLNTGQAQEPYVFPDMDPYLDLDYGHVDTKLEA 181
                 GDV+      ASWLL            A+E     ++  + DLDY  ++     
Sbjct: 117 -----GGDVT------ASWLL------------AKEGIEITNL--FSDLDYPKIEV---T 148

Query: 182 QEQNSSGTDGVVPVQTRNVNANGHLVNDACFDLDFPGSKSYGYGYNSHSQCLSQSVSSSS 241
            E+NSSG DGVVPVQ      N   +N+  F+ D   SK    G+N     ++Q+VS+ +
Sbjct: 149 SEENSSGNDGVVPVQ------NKLFLNEDYFNFDLSASKISQQGFNF----INQTVSTRT 198

Query: 242 LEVGVVPDGSSAMTDITNPYGKGVGVEAGNQTVVQISAADREARVLRYREKRKNRKFEKT 301
           ++V +VP+      ++TN               VQ+S A+REARVLRYREKRKNRKFEKT
Sbjct: 199 IDVPLVPESGGVTAEMTN----------TETPAVQLSPAEREARVLRYREKRKNRKFEKT 248

Query: 302 IRYASRKAYAEMRPRIKGRFAKRTD 326
           IRYASRKAYAEMRPRIKGRFAKRTD
Sbjct: 249 IRYASRKAYAEMRPRIKGRFAKRTD 273

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHH8|COL5_ARATH Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana GN=COL5 PE=2 SV=2

 Score =  282 bits (721), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 173/357 (48%), Positives = 217/357 (60%), Gaps = 30/357 (8%)

Query: 2   ASKLCDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVTC 61
           A++ CD+CKS TA VFCR DSAFLC+ CDT+IH+     +RH RVWVCEVCEQAPA VTC
Sbjct: 18  AARSCDACKSVTAAVFCRVDSAFLCIACDTRIHSF----TRHERVWVCEVCEQAPAAVTC 73

Query: 62  KADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVDSSAVKQGNGGVVNFLDEDRYLD 121
           KADAAALCV+CD DIHSANPLA RHERVPV  F+DS +++  K         L       
Sbjct: 74  KADAAALCVSCDADIHSANPLASRHERVPVETFFDSAETAVAKISASSTFGILGSSTT-- 131

Query: 122 HVDGRSGDVSREEAEAASWLLP--IPKVADLNTG----QAQEPYVFPDMDPYLDLDYGHV 175
            VD  +  V  ++     WLLP    + A +  G    +    ++F D D  +D ++ + 
Sbjct: 132 -VDLTAVPVMADDLGLCPWLLPNDFNEPAKIEIGTENMKGSSDFMFSDFDRLIDFEFPNS 190

Query: 176 DTKLEAQEQNSSGTDGVVPVQTRNVNANGHLVNDACFDLDFPGSKSYGYGYNSHSQCLSQ 235
                   QN++G D +VPVQT+         ND CFD+DF  SK   + Y S S   S 
Sbjct: 191 FN----HHQNNAGGDSLVPVQTK-TEPLPLTNNDHCFDIDFCRSKLSAFTYPSQSV--SH 243

Query: 236 SVSSSSLEVGVVPDGSSAMTDITNPYGKGVGVEAGNQTVVQISAADREARVLRYREKRKN 295
           SVS+SS+E GVVPDG++      N   +     +      Q S+ DREARVLRYREKRKN
Sbjct: 244 SVSTSSIEYGVVPDGNT-----NNSVNRSTITSSTTGGDHQASSMDREARVLRYREKRKN 298

Query: 296 RKFEKTIRYASRKAYAEMRPRIKGRFAKRTDLE-----VEPADRSSSIYGFGIVPSF 347
           RKFEKTIRYASRKAYAE RPRIKGRFAKRT+ E     +     S++   +G+VP+F
Sbjct: 299 RKFEKTIRYASRKAYAESRPRIKGRFAKRTETENDDIFLSHVYASAAHAQYGVVPTF 355

Arabidopsis thaliana (taxid: 3702)

>sp|Q96502|COL2_ARATH Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2 PE=1 SV=1

 Score =  257 bits (656), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 161/362 (44%), Positives = 213/362 (58%), Gaps = 44/362 (12%)

Query: 3   SKLCDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVTCK 62
           ++ CD+C+SA  TV+C ADSA+LC  CD ++HAAN++ASRH RV VC+ CE APA   CK
Sbjct: 13  ARACDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRVCQSCESAPAAFLCK 72

Query: 63  ADAAALCVTCDRDIHSANPLARRHERVPVTPFY-DSVDSSAVKQGNGGVVNFLDEDRYLD 121
           ADAA+LC  CD +IHSANPLARRH+RVP+ P   +S  S A  + +              
Sbjct: 73  ADAASLCTACDAEIHSANPLARRHQRVPILPLSANSCSSMAPSETD-------------- 118

Query: 122 HVDGRSGDVSREEAEAASWLLPIPKVADLNTGQAQEPYVFPDMDPYLDL-DY-GHVDTKL 179
                  D   ++ E ASWLLP P     N G     ++F     YLDL DY   +D + 
Sbjct: 119 ------ADNDEDDREVASWLLPNP---GKNIGNQNNGFLFG--VEYLDLVDYSSSMDNQF 167

Query: 180 EAQE----QNSSGTDGVVPVQTRNVNANGHL-VNDACFDLDFPGSKSYGYGYNSHS-QCL 233
           E  +    Q S G DGVVP+Q     +  HL  +   F L      S G  YN++S + L
Sbjct: 168 EDNQYTHYQRSFGGDGVVPLQVE--ESTSHLQQSQQNFQLGINYGFSSGAHYNNNSLKDL 225

Query: 234 SQSVSSSSLEVGVVPDGSSAMTDITNPYGKGVGVEA----GNQTVVQISAADREARVLRY 289
           + S S SS+++ VVP+ +++   + +P      ++       Q V Q++  +REARVLRY
Sbjct: 226 NHSASVSSMDISVVPESTASDITVQHPRTTKETIDQLSGPPTQVVQQLTPMEREARVLRY 285

Query: 290 REKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDLEVEPADRSS----SIYGFGIVP 345
           REK+K RKF+KTIRYASRKAYAE+RPRIKGRFAKR + E E  +  S    S  G+GIVP
Sbjct: 286 REKKKTRKFDKTIRYASRKAYAEIRPRIKGRFAKRIETEAEAEEIFSTSLMSETGYGIVP 345

Query: 346 SF 347
           SF
Sbjct: 346 SF 347

Putative transcription factor. Does not affect flowering time.

Arabidopsis thaliana (taxid: 3702)

>sp|O50055|COL1_ARATH Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1

 Score =  256 bits (655), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 165/361 (45%), Positives = 213/361 (59%), Gaps = 30/361 (8%)

Query: 3   SKLCDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVTCK 62
           ++ CD+C+SA  TV+CRADSA+LC +CD ++HAAN+LASRH RV VC+ CE+APA   CK
Sbjct: 9   AQACDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRVCQSCERAPAAFFCK 68

Query: 63  ADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVDSSAVKQGNGGVVNFLDEDRYLDH 122
           ADAA+LC TCD +IHSANPLARRH+RVP+ P  +   SS     +        E+R    
Sbjct: 69  ADAASLCTTCDSEIHSANPLARRHQRVPILPISEYSYSSTATNHSCETTVTDPENRL--- 125

Query: 123 VDGRSGDVSREEAEAASWLLPIPKVADLNTGQAQEPYVFPDMDPYLDL-DYGHVDTKLEA 181
           V G+  +   +EAEAASWLLP       N         F   D +L+L DY   D +   
Sbjct: 126 VLGQEEEDE-DEAEAASWLLPNSGKNSGNNNG------FSIGDEFLNLVDYSSSDKQFTD 178

Query: 182 QE----------QNSSGTDGVVPVQTRNVNANGHLVNDACFDLDFPGSKSYGYGYNSHSQ 231
           Q           Q S G DGVVP+Q     + G       F L      S+G    S + 
Sbjct: 179 QSNQYQLDCNVPQRSYGEDGVVPLQIE--VSKGMYQEQQNFQLSI-NCGSWG-ALRSSNG 234

Query: 232 CLSQSVSSSSLEVGVVPDGSSAMTDITNPYG-KGVGVEAGNQTVVQISAADREARVLRYR 290
            LS  V+ SS+++GVVP+ +++   ++NP   K V  +        +S  DREARVLRYR
Sbjct: 235 SLSHMVNVSSMDLGVVPESTTSDATVSNPRSPKAVTDQPPYPPAQMLSPRDREARVLRYR 294

Query: 291 EKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDLEVEPADRSSSIY----GFGIVPS 346
           EK+K RKFEKTIRYASRKAYAE RPRIKGRFAK+ D++ E     S++     G+GIVPS
Sbjct: 295 EKKKMRKFEKTIRYASRKAYAEKRPRIKGRFAKKKDVDEEANQAFSTMITFDTGYGIVPS 354

Query: 347 F 347
           F
Sbjct: 355 F 355

Putative transcription factor that may be involved in the light input to the circadian clock but does not affect flowering time.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39057|CONS_ARATH Zinc finger protein CONSTANS OS=Arabidopsis thaliana GN=CO PE=1 SV=1

 Score =  254 bits (649), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 157/366 (42%), Positives = 212/366 (57%), Gaps = 36/366 (9%)

Query: 6   CDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVTCKADA 65
           CD+C+S   TV+C ADSA+LC++CD ++H+AN++ASRH RV VCE CE+APA   C+AD 
Sbjct: 20  CDTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKRVRVCESCERAPAAFLCEADD 79

Query: 66  AALCVTCDRDIHSANPLARRHERVPVTPFYDSVDSSAVKQGNGGVVNFLDEDRYL--DHV 123
           A+LC  CD ++HSANPLARRH+RVP+ P   +  SS     +       D ++ L  D  
Sbjct: 80  ASLCTACDSEVHSANPLARRHQRVPILPISGNSFSSMTTTHHQSEKTMTDPEKRLVVDQE 139

Query: 124 DGRSGDVSREEAEAASWLLPIPKVADLNTGQAQEPYVFPDMDPYLDL-------DYGHVD 176
           +G  GD  ++  E ASWL P    +D N        +F   D YL+L       DY    
Sbjct: 140 EGEEGD--KDAKEVASWLFP---NSDKNNNNQNNGLLFS--DEYLNLVDYNSSMDYKFTG 192

Query: 177 TKLEAQE-----QNSSGTDGVVPVQTRNVNANGHLV-NDACFDLDFPGSKSYGYGYNSHS 230
              + Q+     Q S G D VVP++     + GH   N   F  +     S G  YN + 
Sbjct: 193 EYSQHQQNCSVPQTSYGGDRVVPLKLE--ESRGHQCHNQQNFQFNIKYGSS-GTHYNDNG 249

Query: 231 QCLSQSVSSSSLEVGVVPDGSSAMTDITNPYGKGVGVE------AGNQTVVQISAADREA 284
             ++ +   SS+E GVVP+ ++ +T  ++P      VE      +   TV Q+S  DREA
Sbjct: 250 S-INHNAYISSMETGVVPESTACVTTASHPRTPKGTVEQQPDPASQMITVTQLSPMDREA 308

Query: 285 RVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDLEVEPADRSSSIY---GF 341
           RVLRYREKRK RKFEKTIRYASRKAYAE+RPR+ GRFAKR ++E E    ++ +    G+
Sbjct: 309 RVLRYREKRKTRKFEKTIRYASRKAYAEIRPRVNGRFAKR-EIEAEEQGFNTMLMYNTGY 367

Query: 342 GIVPSF 347
           GIVPSF
Sbjct: 368 GIVPSF 373

Putative transcription factor that acts in the long day flowering pathway and may mediate between the circadian clock and the control of flowering. Plays a role in the regulation of flowering time by acting on 'SUPPRESSOR OF OVEREXPRESSION OF CO1', 'TERMINAL FLOWER 1' and 'FLOWERING LOCUS T'. Also regulates P5CS2 and ACS10 (involved in proline and ethylene biosynthesis, respectively).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUA9|COL10_ARATH Zinc finger protein CONSTANS-LIKE 10 OS=Arabidopsis thaliana GN=COL10 PE=1 SV=1

 Score =  108 bits (269), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 102/362 (28%), Positives = 158/362 (43%), Gaps = 51/362 (14%)

Query: 5   LCDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVTCKAD 64
           +CD C    + V+CR+D+A LC++CD  +H+AN L+ RH+R  VCE C   PA V C  +
Sbjct: 4   MCDFCGEQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLVCERCNAQPASVRCSDE 63

Query: 65  AAALCVTCDRDIHSA--NPLARRHERVPVTPF--------------------YDSVDSSA 102
             +LC  CD   H    +     H+R  +  +                      S + SA
Sbjct: 64  RVSLCQNCDWSGHDGKNSTTTSHHKRQTINCYSGCPSSAELSSIWSFCMDLNISSAEESA 123

Query: 103 VKQGNGGVVNFLDEDRYLDHVDGRSGDVSREEAEAASWLLPIPKVADLNTGQAQEPYVFP 162
            +QG G +   +DED   +    +  +V + E  +A+  +    V + N+  A+E  V  
Sbjct: 124 CEQGMGLMT--IDEDGTGEKSGVQKINVEQPETSSAAQGMDHSSVPE-NSSMAKELGVCE 180

Query: 163 DMDPYLDLDYGHVDTKLEAQEQ------NSS----GTDGVVPVQTRNVNANGH-----LV 207
           D D   +L    VD  LE  E+      NSS       G+  +  ++    G      L 
Sbjct: 181 D-DFNGNLISDEVDLALENYEELFGSAFNSSRYLFEHGGIGSLFEKDEAHEGSMQQPALS 239

Query: 208 NDACFDLDFPGSKSYGYGYNS---HSQCLSQSVSSSSLEVGVVPDGSSAMTDIT---NPY 261
           N+A  D            Y+S   HS      ++  S        G+S+M  ++    P+
Sbjct: 240 NNASADSFMTCRTEPIICYSSKPAHSNISFSGITGESNAGDFQDCGASSMKQLSREPQPW 299

Query: 262 GKGVGVEAGNQTVVQISAADREARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRF 321
                 +     +    A  R   V+RY+EK+K RKF+K +RY SRK  A++R R+KGRF
Sbjct: 300 CHPTAQD----IIASSHATTRNNAVMRYKEKKKARKFDKRVRYVSRKERADVRRRVKGRF 355

Query: 322 AK 323
            K
Sbjct: 356 VK 357

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SSE5|COL9_ARATH Zinc finger protein CONSTANS-LIKE 9 OS=Arabidopsis thaliana GN=COL9 PE=2 SV=1

 Score =  106 bits (264), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 97/368 (26%), Positives = 159/368 (43%), Gaps = 64/368 (17%)

Query: 5   LCDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVTCKAD 64
           +CD C    + V+CR+D+A LC++CD  +H+AN L+ RH+R  VCE C   PA V C  +
Sbjct: 4   MCDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSKRHSRTLVCERCNAQPATVRCVEE 63

Query: 65  AAALCVTCDRDIHSANPLA---------RRHERVPVTPFYDSVDSS-------------- 101
             +LC  CD   H+ +            ++H+R  ++ +     SS              
Sbjct: 64  RVSLCQNCDWSGHNNSNNNNSSSSSTSPQQHKRQTISCYSGCPSSSELASIWSFCLDLAG 123

Query: 102 -AVKQGNGGVVNFLDEDRYLDHVDGRSGDVSREEAEAASWLLP-IPKVADLNTGQAQEPY 159
            ++ +   G++N +D+D      D ++ +  +++    S  +P    V    +  A++  
Sbjct: 124 QSICEQELGMMN-IDDD---GPTDKKTCNEDKKDVLVGSSSIPETSSVPQGKSSSAKDVG 179

Query: 160 VFPDMDPYLDLDYGHVDTKLEAQEQNSSGTDGVVPVQTRNVNANGHLVNDACFDLDFPGS 219
           +  D D Y +L    VD  LE  E+          +     N +  L      D  F   
Sbjct: 180 MCED-DFYGNLGMDEVDMALENYEE----------LFGTAFNPSEELFGHGGIDSLFHKH 228

Query: 220 KSYGYGYNSHSQCLSQSVSSSSLEVGVVPDGSS------AMTDITNPYGKGVGVEAGNQT 273
           ++   G NS     S     SS    ++   S       + + +T     G   E G  +
Sbjct: 229 QTAPEGGNSVQPAGSNDSFMSSKTEPIICFASKPAHSNISFSGVTGESSAGDFQECGASS 288

Query: 274 VVQIS------------------AADREARVLRYREKRKNRKFEKTIRYASRKAYAEMRP 315
            +Q+S                  +  R   V+RY+EK+K RKF+K +RYASRKA A++R 
Sbjct: 289 SIQLSGEPPWYPPTLQDNNACSHSVTRNNAVMRYKEKKKARKFDKRVRYASRKARADVRR 348

Query: 316 RIKGRFAK 323
           R+KGRF K
Sbjct: 349 RVKGRFVK 356

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FDX8|HD1_ORYSJ Zinc finger protein HD1 OS=Oryza sativa subsp. japonica GN=HD1 PE=2 SV=1

 Score =  101 bits (251), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 65/134 (48%), Positives = 88/134 (65%), Gaps = 14/134 (10%)

Query: 225 GYNSHSQCLSQSVSSSSLEVGVVPDGSSAMTDITN-----PYGKGVGVEAGN--QTVVQI 277
           G ++++  +S S+S SS+E G+VPD  S + D+ N     P G  + + +G   Q  +  
Sbjct: 265 GVSAYTDSISNSISFSSMEAGIVPD--STVIDMPNSRILTPAG-AINLFSGPSLQMSLHF 321

Query: 278 SAADREARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDLEVEPADRSSS 337
           S+ DREARVLRYREK+K RKFEKTIRY +RKAYAE RPRIKGRFAKR+D+++E     S+
Sbjct: 322 SSMDREARVLRYREKKKARKFEKTIRYETRKAYAEARPRIKGRFAKRSDVQIEVDQMFST 381

Query: 338 IY----GFGIVPSF 347
                  +G VP F
Sbjct: 382 AALSDGSYGTVPWF 395

Probable transcription factor involved in the regulation of flower development. Required for the promotion of flowering under short day (SD) conditions and the suppression of flowering under long day (LD) conditions. Regulates positively the floral activator HEADING DATE 3a (HD3A) under SD and negatively under LD conditions.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O23379|COL11_ARATH Putative zinc finger protein CONSTANS-LIKE 11 OS=Arabidopsis thaliana GN=COL11 PE=3 SV=2

 Score = 94.0 bits (232), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 150/350 (42%), Gaps = 50/350 (14%)

Query: 6   CDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVTCKADA 65
           CD C +  A ++C++DSA LC+NCD  +H+AN L+ RH R  +CE C   P  V C  + 
Sbjct: 5   CDFCGTEKALIYCKSDSAKLCLNCDVNVHSANPLSQRHTRSLLCEKCSLQPTAVHCMNEN 64

Query: 66  AALCVTCDRDIHSANPLARRHERV------PVTPFYDSVDSSAVKQGNGGVVNFLDED-- 117
            +LC  C     +   L  R + +      P    +  + SS ++     +V+   +   
Sbjct: 65  VSLCQGCQWTASNCTGLGHRLQSLNPYSDCPSPSDFGKIWSSTLEPSVTSLVSPFSDTLL 124

Query: 118 RYLDHVDGRSGDVSREEAEAASWLLPIPKVADLNTGQAQEPYVFPDMDPYLDLDYG-HVD 176
           + LD  +G S  V  +      +    P  ++L       P V  +    LDL  G ++D
Sbjct: 125 QELDDWNGSSTSVVTQTQNLKDYSSFFPMESNL-------PKVIEEECSGLDLCEGINLD 177

Query: 177 TKLEAQEQNSSGTDGVVPVQTRNVNANGHLVNDACFDLDFPGSKSYGYGYNSHSQCLSQS 236
                            P+   N NA+  ++   C  LD      Y   +   +     S
Sbjct: 178 D---------------APL---NFNASNDII--GCSSLDNTKCYEYEDSFKEENNIGLPS 217

Query: 237 VSSSSLEVGVVPDGSSAMTDITNPYG----KGVGVEAG---------NQTVVQISAADRE 283
           +   +L   VVP+ S +M+++T        +  G+  G         +   V  +   R+
Sbjct: 218 LLLPTLSGNVVPNMSLSMSNLTGESNATDYQDCGISPGFLIGDSPWESNVEVSFNPKLRD 277

Query: 284 ARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTD-LEVEPA 332
               RY++K+  R F K IRYASRKA A+ R R+KGRF K  +  E +P+
Sbjct: 278 EAKKRYKQKKSKRMFGKQIRYASRKARADTRKRVKGRFVKSGETFEYDPS 327

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	347
321146482	335	CONSTANS-like protein [Gossypium hirsutu	0.951	0.985	0.758	1e-133
323650483	322	CONSTANS [Mangifera indica]	0.907	0.978	0.759	1e-132
323650485	322	CONSTANS [Mangifera indica]	0.907	0.978	0.757	1e-131
224760941	322	CONSTANS-like protein [Mangifera indica]	0.907	0.978	0.751	1e-131
255548652	332	Salt-tolerance protein, putative [Ricinu	0.939	0.981	0.739	1e-130
197726026	343	CONSTANS-like protein [Prunus persica]	0.959	0.970	0.719	1e-127
449441842	337	PREDICTED: zinc finger protein CONSTANS-	0.953	0.982	0.699	1e-124
118489345	350	unknown [Populus trichocarpa x Populus d	0.953	0.945	0.724	1e-121
224143378	350	predicted protein [Populus trichocarpa]	0.953	0.945	0.726	1e-121
224092663	348	predicted protein [Populus trichocarpa]	0.948	0.945	0.707	1e-120

>gi|321146482|gb|ADW65758.1| CONSTANS-like protein [Gossypium hirsutum]

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 267/352 (75%), Positives = 295/352 (83%), Gaps = 22/352 (6%)

Query: 1   MASKLCDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVT 60
           MASKLCDSCKSATATVFCRADSAFLC NCD+KIHAANKLASRHARVWVCEVCEQAPAHVT
Sbjct: 1   MASKLCDSCKSATATVFCRADSAFLCSNCDSKIHAANKLASRHARVWVCEVCEQAPAHVT 60

Query: 61  CKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVDSSAVKQGNGGVVNFLDEDRYL 120
           CKADAAALC+TCDRDIHSANPLA RHER+PVTPFYDSV+S    + N GVV FL E+RY 
Sbjct: 61  CKADAAALCITCDRDIHSANPLASRHERLPVTPFYDSVNSVPAVKPN-GVVKFL-EERYF 118

Query: 121 DHVDGRSGDVSREEAEAASWLLPIPK-----VADLNTGQAQEPYVFPDMDPYLDLDYGHV 175
             VDG   DVSREEAEAASWLLP P        D+N+GQ    YVF +MDPYLDLDYGH 
Sbjct: 119 SDVDG-DADVSREEAEAASWLLPNPNHKAVDSPDVNSGQ----YVFSEMDPYLDLDYGHG 173

Query: 176 DTKLEAQEQNSSGTDGVVPVQTRNVNANGHLVNDACFDLDFPGSKSYGYGYNSHSQCLSQ 235
           D K++AQEQNSSGTDGVVPVQ++NV A     ND CFDLDF GSK + YGYN +   +S 
Sbjct: 174 DPKMDAQEQNSSGTDGVVPVQSKNVQAPS--ANDHCFDLDFTGSKPFSYGYNPN--FISH 229

Query: 236 SVSSSSLEVGVVPDGSSAMTDITNPYGKGVGVEAGNQTVVQISAADREARVLRYREKRKN 295
           SVSSSSL+VGVVPDGS+ MTDI+NPYG+  G E+ +Q +VQ+S ADREARVLRYREKRKN
Sbjct: 230 SVSSSSLDVGVVPDGST-MTDISNPYGR--GPESTHQ-MVQLSPADREARVLRYREKRKN 285

Query: 296 RKFEKTIRYASRKAYAEMRPRIKGRFAKRTDLEVEPADRSSSIYGFGIVPSF 347
           RKFEKTIRYASRKAYAEMRPRIKGRFAKRTD+EVE  DR S++YGFG+VPSF
Sbjct: 286 RKFEKTIRYASRKAYAEMRPRIKGRFAKRTDIEVE-VDR-SNMYGFGVVPSF 335

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|323650483|gb|ADX97322.1| CONSTANS [Mangifera indica]

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 269/354 (75%), Positives = 291/354 (82%), Gaps = 39/354 (11%)

Query: 1   MASKLCDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVT 60
           MASKLCDSCKSATAT+FCRADSAFLCVNCDTKIH ANKLASRHARVWVCEVCEQAPAHVT
Sbjct: 1   MASKLCDSCKSATATLFCRADSAFLCVNCDTKIHTANKLASRHARVWVCEVCEQAPAHVT 60

Query: 61  CKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVDSSAVKQGNGGVVNFLDEDRYL 120
           CKADAAALCV CD DIHSANPLARRHERVPVTPFYDSV+S+     + GVVNF D+    
Sbjct: 61  CKADAAALCVACDHDIHSANPLARRHERVPVTPFYDSVNSA---DKHNGVVNFFDD---- 113

Query: 121 DHVDGRSGDVSREEAEAASWLLPIPKVA----DLNTGQAQEPYVFPDMDPYLDLDYGHVD 176
             V+G  GDVSREEAEAASWLLP PKV     ++NTGQ    YVF DMDPYLDLDYG VD
Sbjct: 114 --VEG-GGDVSREEAEAASWLLPNPKVVEDGPEMNTGQ----YVFSDMDPYLDLDYGPVD 166

Query: 177 TKLEAQEQNSSGTDGVVPVQTRNVNANGHLVNDACFDLDFPGSKSYGYGYNSHSQCLSQS 236
            KLEAQEQNSSGTDGVVPVQ++   A   LVND CFDLDF G KS+GYGYN ++QCLS S
Sbjct: 167 PKLEAQEQNSSGTDGVVPVQSQ--TAPVPLVNDHCFDLDFSGPKSFGYGYN-NTQCLSHS 223

Query: 237 VSSSSLEVGVVPDGSSAMTDITNPYGKGVGVEAGNQTVVQISAADREARVLRYREKRKNR 296
           VSSSSL+VGVVPDGS+               E+ NQT VQ+S+ADREARVLRYREKRKNR
Sbjct: 224 VSSSSLDVGVVPDGSAT-------------TESTNQT-VQLSSADREARVLRYREKRKNR 269

Query: 297 KFEKTIRYASRKAYAEMRPRIKGRFAKRTDLEVEPADR---SSSIYGFGIVPSF 347
           KFEKTIRYASRKAYAEMRPRIKGRFAKRTD++VE ADR   SSSIYGFG+VPS+
Sbjct: 270 KFEKTIRYASRKAYAEMRPRIKGRFAKRTDMDVE-ADRSSNSSSIYGFGVVPSY 322

Source: Mangifera indica

Species: Mangifera indica

Genus: Mangifera

Family: Anacardiaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|323650485|gb|ADX97323.1| CONSTANS [Mangifera indica]

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 268/354 (75%), Positives = 291/354 (82%), Gaps = 39/354 (11%)

Query: 1   MASKLCDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVT 60
           MASKLCDSCKSATAT+FCRADSAFLCV+CDTKIH ANKLASRHARVWVCEVCEQAPAHVT
Sbjct: 1   MASKLCDSCKSATATLFCRADSAFLCVSCDTKIHTANKLASRHARVWVCEVCEQAPAHVT 60

Query: 61  CKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVDSSAVKQGNGGVVNFLDEDRYL 120
           CKADAAALCV CD DIHSANPLARRHERVPVTPFYDSV+S+     + GVVNF D+    
Sbjct: 61  CKADAAALCVACDHDIHSANPLARRHERVPVTPFYDSVNSA---DKHNGVVNFFDD---- 113

Query: 121 DHVDGRSGDVSREEAEAASWLLPIPKVA----DLNTGQAQEPYVFPDMDPYLDLDYGHVD 176
             V+G  GDVSREEAEAASWLLP PKV     ++NTGQ    YVF DMDPYLDLDYG VD
Sbjct: 114 --VEG-GGDVSREEAEAASWLLPNPKVVEDGPEMNTGQ----YVFSDMDPYLDLDYGPVD 166

Query: 177 TKLEAQEQNSSGTDGVVPVQTRNVNANGHLVNDACFDLDFPGSKSYGYGYNSHSQCLSQS 236
            KLEAQEQNSSGTDGVVPVQ++   A   LVND CFDLDF G KS+GYGYN ++QCLS S
Sbjct: 167 PKLEAQEQNSSGTDGVVPVQSQ--TAPVPLVNDHCFDLDFSGPKSFGYGYN-NTQCLSHS 223

Query: 237 VSSSSLEVGVVPDGSSAMTDITNPYGKGVGVEAGNQTVVQISAADREARVLRYREKRKNR 296
           VSSSSL+VGVVPDGS+               E+ NQT VQ+S+ADREARVLRYREKRKNR
Sbjct: 224 VSSSSLDVGVVPDGSAT-------------TESTNQT-VQLSSADREARVLRYREKRKNR 269

Query: 297 KFEKTIRYASRKAYAEMRPRIKGRFAKRTDLEVEPADR---SSSIYGFGIVPSF 347
           KFEKTIRYASRKAYAEMRPRIKGRFAKRTD++VE ADR   SSSIYGFG+VPS+
Sbjct: 270 KFEKTIRYASRKAYAEMRPRIKGRFAKRTDMDVE-ADRSSNSSSIYGFGVVPSY 322

Source: Mangifera indica

Species: Mangifera indica

Genus: Mangifera

Family: Anacardiaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224760941|gb|ACN62415.1| CONSTANS-like protein [Mangifera indica]

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 266/354 (75%), Positives = 290/354 (81%), Gaps = 39/354 (11%)

Query: 1   MASKLCDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVT 60
           MASKLCDSCKSATAT+FCRADSAFLCV+CDTKIH ANKLASRHARVWVCEVCEQAPAHVT
Sbjct: 1   MASKLCDSCKSATATLFCRADSAFLCVSCDTKIHTANKLASRHARVWVCEVCEQAPAHVT 60

Query: 61  CKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVDSSAVKQGNGGVVNFLDEDRYL 120
           CKADAAALCV CD DIHSANPLARRHERVPVTPFYDSV+S+     + GVVNF D+    
Sbjct: 61  CKADAAALCVACDHDIHSANPLARRHERVPVTPFYDSVNSA---DKHNGVVNFFDD---- 113

Query: 121 DHVDGRSGDVSREEAEAASWLLPIPKVA----DLNTGQAQEPYVFPDMDPYLDLDYGHVD 176
             V+G  GD SREEAEAASWLLP PKV     ++NTGQ    YVF DMDPYLDLDYG VD
Sbjct: 114 --VEG-GGDASREEAEAASWLLPNPKVVEDGPEMNTGQ----YVFSDMDPYLDLDYGPVD 166

Query: 177 TKLEAQEQNSSGTDGVVPVQTRNVNANGHLVNDACFDLDFPGSKSYGYGYNSHSQCLSQS 236
            KLEAQEQNSSGTDGVVPVQ++   A   LVND CFDLDF G KS+GYGYN ++QCLS S
Sbjct: 167 PKLEAQEQNSSGTDGVVPVQSQ--TAPVPLVNDHCFDLDFSGPKSFGYGYN-NTQCLSHS 223

Query: 237 VSSSSLEVGVVPDGSSAMTDITNPYGKGVGVEAGNQTVVQISAADREARVLRYREKRKNR 296
           VSSSSL+VGVVPDGS+               E+ NQT VQ+S+ADREARVLRYREKRKN+
Sbjct: 224 VSSSSLDVGVVPDGSAT-------------TESTNQT-VQLSSADREARVLRYREKRKNK 269

Query: 297 KFEKTIRYASRKAYAEMRPRIKGRFAKRTDLEVEPADR---SSSIYGFGIVPSF 347
           KFEKTIRYASRKAYAEMRPRIKGRFAKRTD++VE ADR   SSSIYGFG+VPS+
Sbjct: 270 KFEKTIRYASRKAYAEMRPRIKGRFAKRTDMDVE-ADRSSNSSSIYGFGVVPSY 322

Source: Mangifera indica

Species: Mangifera indica

Genus: Mangifera

Family: Anacardiaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548652|ref|XP_002515382.1| Salt-tolerance protein, putative [Ricinus communis] gi|223545326|gb|EEF46831.1| Salt-tolerance protein, putative [Ricinus communis]

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 261/353 (73%), Positives = 282/353 (79%), Gaps = 27/353 (7%)

Query: 1   MASKLCDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVT 60
           MASKLCDSCKSATAT+FCR DSAFLC+NCD+KIHAANKLASRHARV +CEVCEQAPAHVT
Sbjct: 1   MASKLCDSCKSATATLFCRPDSAFLCINCDSKIHAANKLASRHARVLICEVCEQAPAHVT 60

Query: 61  CKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVDSSAVKQGNGGVVNFLDEDRYL 120
           CKADAAALCVTCDRDIHSANPLARRHERVP+TPFYDSV S   K      VN LD DRY 
Sbjct: 61  CKADAAALCVTCDRDIHSANPLARRHERVPITPFYDSVSSVNNKP---NAVNLLD-DRYF 116

Query: 121 DHVDGRSGDVSREEAEAASWLLPIP------KVADLNTGQAQEPYVFPDMDPYLDLDYGH 174
             VDG + DVSREEAEAASWLLP P      + +D NTGQ    YVF DMDPYLDLDYG 
Sbjct: 117 SDVDGDAADVSREEAEAASWLLPNPPNTKLVENSDPNTGQ----YVFSDMDPYLDLDYGP 172

Query: 175 VDTKLEAQEQNSSGTDGVVPVQTRNVNANGHLVNDACFDLDFPGSKSYGYGYNSHSQCLS 234
            D KLEAQEQNSSGTDGVVPV++   N     VND CF+LDF GSK + YGYN  +QCLS
Sbjct: 173 GDPKLEAQEQNSSGTDGVVPVKSSK-NVQAPFVNDNCFELDFTGSKPFPYGYN--AQCLS 229

Query: 235 QSVSSSSLEVGVVPDGSSAMTDITNPYGKGVGVEAGNQTVVQISAADREARVLRYREKRK 294
            SVSSSSL+VGVVPDG     DI+NPY K        ++V Q+SA DREARVLRYREKRK
Sbjct: 230 NSVSSSSLDVGVVPDGG----DISNPYSKSTM-----ESVQQLSAVDREARVLRYREKRK 280

Query: 295 NRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDLEVEPADRSSSIYGFGIVPSF 347
           NRKFEKTIRYASRKAYAE RPRIKGRFAKRTD++VE ADRSSSI  FG+VPSF
Sbjct: 281 NRKFEKTIRYASRKAYAETRPRIKGRFAKRTDIDVE-ADRSSSINAFGVVPSF 332

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|197726026|gb|ACH73166.1| CONSTANS-like protein [Prunus persica]

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 257/357 (71%), Positives = 292/357 (81%), Gaps = 24/357 (6%)

Query: 1   MASKLCDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVT 60
           MASKLCDSCKSATAT+FCRADSAFLCVNCD+KIHAANKLASRHARVW+CEVCEQAPAHVT
Sbjct: 1   MASKLCDSCKSATATLFCRADSAFLCVNCDSKIHAANKLASRHARVWLCEVCEQAPAHVT 60

Query: 61  CKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVDSSAVKQG-NGGVVNFLDEDRY 119
           CKAD AALCVTCDRDIHSANPL+RRHERVPVTPFYDS +S+A        VVNFLD DRY
Sbjct: 61  CKADDAALCVTCDRDIHSANPLSRRHERVPVTPFYDSGNSAANSAPVVKSVVNFLD-DRY 119

Query: 120 LDHVDGRSG--DVSREEAEAASWLLPIPKVA---DLNTGQAQEPYVFPDMDPYLDLDYGH 174
              VDG+    +VSREEAEAASWLLP PK     DLN+G+    Y  P+MDPYLDLDYGH
Sbjct: 120 FSDVDGQDAETEVSREEAEAASWLLPNPKAMENPDLNSGE----YFLPEMDPYLDLDYGH 175

Query: 175 VDTKLE-AQEQNSSGTDGVVPVQTRNVNANGHLVNDACFDLDF-PGSKSYGYGYNSHSQC 232
           VD KLE AQEQNS GTDGVVPVQ+++V     LVND  F++DF   SK Y YG+  H+QC
Sbjct: 176 VDPKLEDAQEQNSCGTDGVVPVQSKSVQP--QLVNDHSFEIDFSAASKPYVYGF--HAQC 231

Query: 233 LSQSVSSSSLEVGVVPDGSSAMTDITNPYGKGV--GVEAGNQTVVQISAADREARVLRYR 290
           LSQSVSSSS++V VVPDG++ MTD+ +PY K +   VE+ +Q  VQIS+ADREARVLRYR
Sbjct: 232 LSQSVSSSSMDVSVVPDGNTTMTDVCDPYTKSMSAAVESTHQ-AVQISSADREARVLRYR 290

Query: 291 EKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDLEVEPADRSSSIYGFGIVPSF 347
           EKRKNRKFEKTIRYASRKAYAE RPRIKGRFAKRT++E+E A+R   +  +G+VPSF
Sbjct: 291 EKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEVEIE-AER---LCRYGVVPSF 343

Source: Prunus persica

Species: Prunus persica

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441842|ref|XP_004138691.1| PREDICTED: zinc finger protein CONSTANS-LIKE 4-like [Cucumis sativus] gi|449521617|ref|XP_004167826.1| PREDICTED: zinc finger protein CONSTANS-LIKE 4-like [Cucumis sativus]

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 247/353 (69%), Positives = 286/353 (81%), Gaps = 22/353 (6%)

Query: 1   MASKLCDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVT 60
           MASKLCDSCKSATAT+FCRADSAFLC+ CD+K+HAANKLASRHARVWVCEVCEQAPAHVT
Sbjct: 1   MASKLCDSCKSATATLFCRADSAFLCLGCDSKVHAANKLASRHARVWVCEVCEQAPAHVT 60

Query: 61  CKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVDS-SAVKQGNGGVVNFLDEDRY 119
           CKADAAALC+TCD DIHSANPLARRHERVPVTPFYD+ +S +++       +NFLD DRY
Sbjct: 61  CKADAAALCLTCDHDIHSANPLARRHERVPVTPFYDTSNSDNSLPVKPSAAINFLD-DRY 119

Query: 120 LDHVDGRSGDVSREEAEAASWLLPIP-----KVADLNTGQAQEPYVFPDMDPYLDLDYGH 174
              VD  + DVSREEAEAASWLLP P     + +DLN+G+    + FP+MDPYLDLDY H
Sbjct: 120 FSDVDADAADVSREEAEAASWLLPNPNPKAIESSDLNSGK----FEFPEMDPYLDLDYSH 175

Query: 175 VDTKLEAQEQNSSGTDGVVPVQTRNVNANGHLVNDACFDLDFPGSKSYGYGYNSHSQCLS 234
           VD KLEAQEQNSSG DGVVPVQ++ V+ +    ND C  +DF G+KS+ YG+N   Q +S
Sbjct: 176 VDPKLEAQEQNSSGADGVVPVQSKGVHLSS--ANDRCLGIDFTGTKSFPYGHN--PQSIS 231

Query: 235 QSVSSSSLEVGVVPDGSSAMTDITNPYGKGVGVEAGNQTVVQISAADREARVLRYREKRK 294
            SVSSSS+EVGVVPDG +AMTD++NPY K    E+  Q  +QIS ADREARVLRYREKRK
Sbjct: 232 HSVSSSSIEVGVVPDG-NAMTDVSNPYTKP-STESSVQP-LQISPADREARVLRYREKRK 288

Query: 295 NRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDLEVEPADRSSSIYGFGIVPSF 347
           NRKFEKTIRYASRKAYAE RPRIKGRFAKRTD+E++  DR   + G+G+VPSF
Sbjct: 289 NRKFEKTIRYASRKAYAETRPRIKGRFAKRTDIELD-VDR---VSGYGVVPSF 337

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489345|gb|ABK96477.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 265/366 (72%), Positives = 289/366 (78%), Gaps = 35/366 (9%)

Query: 1   MASKLCDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVT 60
           MASKLCDSCKSATAT+FCRADSAFLC++CD+KIHAANKLASRHARV VCEVCEQAPAH T
Sbjct: 1   MASKLCDSCKSATATLFCRADSAFLCISCDSKIHAANKLASRHARVSVCEVCEQAPAHFT 60

Query: 61  CKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVDSSAVKQGNGGVVNFLDEDRYL 120
           CKADAAALCVTCDRDIHSANPLA RHERVP+TPF+   DSS+   G G  VN L EDRY 
Sbjct: 61  CKADAAALCVTCDRDIHSANPLASRHERVPITPFF---DSSSTVHGGGAAVNLL-EDRYF 116

Query: 121 DHVDGRSGDVSREEAEAASWLLPIP--------KVADLNTGQAQEPYVF-PDMDPYLDLD 171
           D VDG  GDVSREEAEA SWLLP P           DLNTGQ    YVF  +MDPYLDLD
Sbjct: 117 DEVDGGRGDVSREEAEAESWLLPNPGGGTAKGVDSMDLNTGQ----YVFGSEMDPYLDLD 172

Query: 172 YGHVDTKLEAQEQNSSG-TDGVVPVQTRNVNANG-HLVND-ACFDLDF-PGSKSY--GYG 225
             +VD K+E QEQNSSG TDGVVPVQ+  +      LVND  C++LDF  GSKS+  GYG
Sbjct: 173 -PYVDPKVEVQEQNSSGTTDGVVPVQSNKLGFQAPALVNDNCCYELDFSTGSKSFGGGYG 231

Query: 226 YNSHSQCLSQSVSSSSLEVGVVPDGS-SAMTDITNPY-GKGV--GVEAGNQTVVQISAAD 281
           YNS     S SVSSSSL+VGVVPDGS S +TDI+NPY  + V  G+E+ NQT VQ+SA D
Sbjct: 232 YNSL----SHSVSSSSLDVGVVPDGSGSTLTDISNPYCSRSVSNGMESANQT-VQLSAVD 286

Query: 282 REARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDLEVEPADRSSSIYGF 341
           REARVLRYREKRKNRKFEKTIRYASRKAYAE RPRIKGRFAKRTD EVE  DR SS+YGF
Sbjct: 287 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDTEVE-VDR-SSLYGF 344

Query: 342 GIVPSF 347
           G+VPSF
Sbjct: 345 GVVPSF 350

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143378|ref|XP_002324936.1| predicted protein [Populus trichocarpa] gi|222866370|gb|EEF03501.1| predicted protein [Populus trichocarpa]

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 266/366 (72%), Positives = 290/366 (79%), Gaps = 35/366 (9%)

Query: 1   MASKLCDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVT 60
           MASKLCDSCKSATAT+FCRADSAFLC++CD+KIHAANKLASRHARV VCEVCEQAPAH T
Sbjct: 1   MASKLCDSCKSATATLFCRADSAFLCISCDSKIHAANKLASRHARVSVCEVCEQAPAHFT 60

Query: 61  CKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVDSSAVKQGNGGVVNFLDEDRYL 120
           CKADAAALCVTCDRDIHSANPLA RHERVP+TPF+   DSS+   G G  VN L EDRY 
Sbjct: 61  CKADAAALCVTCDRDIHSANPLASRHERVPITPFF---DSSSTVHGGGEAVNLL-EDRYF 116

Query: 121 DHVDGRSGDVSREEAEAASWLLPIP--------KVADLNTGQAQEPYVF-PDMDPYLDLD 171
           D VDG  GDVSREEAEA SWLLP P           DLNTGQ    YVF  +MDPYLDLD
Sbjct: 117 DEVDGGRGDVSREEAEAESWLLPNPGGGTTKGVDSMDLNTGQ----YVFGSEMDPYLDLD 172

Query: 172 YGHVDTKLEAQEQNSSG-TDGVVPVQTRNVNANG-HLVND-ACFDLDF-PGSKSY--GYG 225
             +VD K+E QEQNSSG TDGVVPVQ+  +      LVND  C++LDF  GSKS+  GYG
Sbjct: 173 -PYVDPKVEVQEQNSSGTTDGVVPVQSNKLGFQSPALVNDHCCYELDFSTGSKSFGGGYG 231

Query: 226 YNSHSQCLSQSVSSSSLEVGVVPDGS-SAMTDITNPY-GKGV--GVEAGNQTVVQISAAD 281
           YNS     SQSVSSSSL+VGVVPDGS S +TDI+NPY  + V  G+E+ NQT VQ+SA D
Sbjct: 232 YNSL----SQSVSSSSLDVGVVPDGSGSTLTDISNPYCSRSVCNGMESANQT-VQLSAVD 286

Query: 282 REARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDLEVEPADRSSSIYGF 341
           REARVLRYREKRKNRKFEKTIRYASRKAYAE RPRIKGRFAKRTD EVE  DR SS+YGF
Sbjct: 287 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDTEVE-VDR-SSLYGF 344

Query: 342 GIVPSF 347
           G+VPSF
Sbjct: 345 GVVPSF 350

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092663|ref|XP_002309695.1| predicted protein [Populus trichocarpa] gi|222855671|gb|EEE93218.1| predicted protein [Populus trichocarpa]

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 259/366 (70%), Positives = 283/366 (77%), Gaps = 37/366 (10%)

Query: 1   MASKLCDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVT 60
           MASKLCDSCKSATAT+FCRADSAFLCV+CD+KIHAANKLASRHARVWVCEVCEQAPAHVT
Sbjct: 1   MASKLCDSCKSATATLFCRADSAFLCVSCDSKIHAANKLASRHARVWVCEVCEQAPAHVT 60

Query: 61  CKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVDSSAVKQGNGGVVNFLDEDRYL 120
           CKADAAALCVTCDRDIHSANPLA+RHERVPVTPF+   DSS+   G G  VNFL E RYL
Sbjct: 61  CKADAAALCVTCDRDIHSANPLAQRHERVPVTPFF---DSSSAAHGGGAAVNFL-EYRYL 116

Query: 121 DHVDGRSGDVSREEAEAASWLLPIPKVA--------DLNTGQAQEPYVF-PDMDPYLDLD 171
           D V+G   DVSREEAEA SWLLP P           DLNTGQ    YVF  +M PYLDLD
Sbjct: 117 DDVNG-GDDVSREEAEAESWLLPNPGGGNTKGVDSLDLNTGQ----YVFGAEMHPYLDLD 171

Query: 172 YGHVDTK--LEAQEQNSSG-TDGVVPVQTRNVNANG-HLVND-ACFDLDF-PGSKSY--G 223
             +VD K  +E QEQNSSG TDGVVPVQ+  +      LVND  CF+LDF  GSK++  G
Sbjct: 172 R-YVDQKVEVEVQEQNSSGTTDGVVPVQSNKLGFQAPALVNDNCCFELDFSAGSKTFAGG 230

Query: 224 YGYNSHSQCLSQSVSSSSLEVGVVPDGSSAMTDITNPYGKGV--GVEAGNQTVVQISAAD 281
           YGYNS S  +S S         VVPDGS+ +TDI+NPY + V  G+E+ NQT VQ+SA D
Sbjct: 231 YGYNSLSHSVSSSSLDVG----VVPDGST-LTDISNPYSRSVSNGMESANQT-VQLSAVD 284

Query: 282 REARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDLEVEPADRSSSIYGF 341
           REARVLRYREKRKNRKFEKTIRYASRKAYAE RPRIKGRFAKRTD  VE  DR SSIYGF
Sbjct: 285 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDSGVE-VDR-SSIYGF 342

Query: 342 GIVPSF 347
           G+VPSF
Sbjct: 343 GVVPSF 348

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	347
TAIR|locus:2047246	294	COL3 "CONSTANS-like 3" [Arabid	0.325	0.384	0.767	2.5e-75
TAIR|locus:2172545	355	COL5 "CONSTANS-like 5" [Arabid	0.942	0.921	0.464	3.7e-71
TAIR|locus:2143221	355	COL1 "CONSTANS-like 1" [Arabid	0.951	0.929	0.447	4.1e-65
TAIR|locus:2143206	373	CO "CONSTANS" [Arabidopsis tha	0.948	0.882	0.438	6e-64
TAIR|locus:2074587	347	COL2 "CONSTANS-like 2" [Arabid	0.916	0.916	0.439	4.2e-63
UNIPROTKB|Q9FE92	407	Hd1 "Heading day 1" [Oryza sat	0.253	0.216	0.647	1.3e-55
UNIPROTKB|Q9FDX8	395	HD1 "Zinc finger protein HD1"	0.221	0.194	0.636	6.8e-51
UNIPROTKB|Q9FRZ7	342	Hd1 "Hd1 protein" [Oryza sativ	0.253	0.257	0.670	1.8e-32
UNIPROTKB|Q9FRZ6	259	Q9FRZ6 "Hd1" [Oryza sativa (ta	0.253	0.339	0.647	2e-31
TAIR|locus:2043288	332	AT2G47890 [Arabidopsis thalian	0.256	0.268	0.395	5.4e-27

TAIR|locus:2047246 COL3 "CONSTANS-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 488 (176.8 bits), Expect = 2.5e-75, Sum P(2) = 2.5e-75
 Identities = 89/116 (76%), Positives = 101/116 (87%)

Query:     2 ASKLCDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVTC 61
             +S+LCDSCKS  AT+FCRAD+AFLC +CD KIH ANKLASRH RVW+CEVCEQAPAHVTC
Sbjct:     4 SSRLCDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWLCEVCEQAPAHVTC 63

Query:    62 KADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVDSSAVKQGNGGVVNFLDED 117
             KADAAALCVTCDRDIHSANPL+RRHERVP+TPFYD+V  +  K  +  V NF+DED
Sbjct:    64 KADAAALCVTCDRDIHSANPLSRRHERVPITPFYDAVGPA--KSASSSV-NFVDED 116

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0010099 "regulation of photomorphogenesis" evidence=IMP

GO:0010161 "red light signaling pathway" evidence=IMP

GO:0009637 "response to blue light" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0032880 "regulation of protein localization" evidence=RCA

TAIR|locus:2172545 COL5 "CONSTANS-like 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 720 (258.5 bits), Expect = 3.7e-71, P = 3.7e-71
 Identities = 166/357 (46%), Positives = 208/357 (58%)

Query:     2 ASKLCDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVTC 61
             A++ CD+CKS TA VFCR DSAFLC+ CDT+IH+     +RH RVWVCEVCEQAPA VTC
Sbjct:    18 AARSCDACKSVTAAVFCRVDSAFLCIACDTRIHSF----TRHERVWVCEVCEQAPAAVTC 73

Query:    62 KADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVDSSAVKQGNGGVVNFLDEDRYLD 121
             KADAAALCV+CD DIHSANPLA RHERVPV  F+DS +++  K         L       
Sbjct:    74 KADAAALCVSCDADIHSANPLASRHERVPVETFFDSAETAVAKISASSTFGILGSSTT-- 131

Query:   122 HVDGRSGDVSREEAEAASWLLPI----PKVADLNTG--QAQEPYVFPDMDPYLDLDYGHV 175
              VD  +  V  ++     WLLP     P   ++ T   +    ++F D D  +D ++ + 
Sbjct:   132 -VDLTAVPVMADDLGLCPWLLPNDFNEPAKIEIGTENMKGSSDFMFSDFDRLIDFEFPNS 190

Query:   176 DTKLEAQEQNSSGTDGVVPVQTRNVNANGHLVNDACFDLDFPGSKSYGYGYNXXXXXXXX 235
                     QN++G D +VPVQT+         ND CFD+DF  SK   + Y         
Sbjct:   191 FN----HHQNNAGGDSLVPVQTKT-EPLPLTNNDHCFDIDFCRSKLSAFTYPSQSVSHSV 245

Query:   236 XXXXXXXEVGVVPDGSSAMTDITNPYGKGVGVEAGNQTVVQISAADREARVLRYREKRKN 295
                    E GVVPDG++      N   +     +      Q S+ DREARVLRYREKRKN
Sbjct:   246 STSSI--EYGVVPDGNT-----NNSVNRSTITSSTTGGDHQASSMDREARVLRYREKRKN 298

Query:   296 RKFEKTIRYASRKAYAEMRPRIKGRFAKRTDLEVEPADRS----SSIYG-FGIVPSF 347
             RKFEKTIRYASRKAYAE RPRIKGRFAKRT+ E +    S    S+ +  +G+VP+F
Sbjct:   299 RKFEKTIRYASRKAYAESRPRIKGRFAKRTETENDDIFLSHVYASAAHAQYGVVPTF 355

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0042631 "cellular response to water deprivation" evidence=RCA

TAIR|locus:2143221 COL1 "CONSTANS-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
 Identities = 162/362 (44%), Positives = 209/362 (57%)

Query:     3 SKLCDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVTCK 62
             ++ CD+C+SA  TV+CRADSA+LC +CD ++HAAN+LASRH RV VC+ CE+APA   CK
Sbjct:     9 AQACDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRVCQSCERAPAAFFCK 68

Query:    63 ADAAALCVTCDRDIHSANPLARRHERVPVTPFYD-SVDSSAVKQGNGGVVNFLDEDRYLD 121
             ADAA+LC TCD +IHSANPLARRH+RVP+ P  + S  S+A        V   D +  L 
Sbjct:    69 ADAASLCTTCDSEIHSANPLARRHQRVPILPISEYSYSSTATNHSCETTVT--DPENRL- 125

Query:   122 HVDGRSGDVSREEAEAASWLLPIPKVADLNTGQAQEPYVFPDMDPYLDL-DYGHVDTKLE 180
              V G+  +   +EAEAASWLLP    +  N+G       F   D +L+L DY   D +  
Sbjct:   126 -VLGQEEE-DEDEAEAASWLLPN---SGKNSGNNNG---FSIGDEFLNLVDYSSSDKQFT 177

Query:   181 AQE----------QNSSGTDGVVPVQTRNVNANGHLVNDACFDLDFPGSKSYGYGYNXXX 230
              Q           Q S G DGVVP+Q     + G       F L      S+G       
Sbjct:   178 DQSNQYQLDCNVPQRSYGEDGVVPLQIEV--SKGMYQEQQNFQLSI-NCGSWG-ALRSSN 233

Query:   231 XXXXXXXXXXXXEVGVVPDGSSAMTDITNPYG-KGVGVEAGNQTVVQISAADREARVLRY 289
                         ++GVVP+ +++   ++NP   K V  +        +S  DREARVLRY
Sbjct:   234 GSLSHMVNVSSMDLGVVPESTTSDATVSNPRSPKAVTDQPPYPPAQMLSPRDREARVLRY 293

Query:   290 REKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDLEVEPADRSSSIY----GFGIVP 345
             REK+K RKFEKTIRYASRKAYAE RPRIKGRFAK+ D++ E     S++     G+GIVP
Sbjct:   294 REKKKMRKFEKTIRYASRKAYAEKRPRIKGRFAKKKDVDEEANQAFSTMITFDTGYGIVP 353

Query:   346 SF 347
             SF
Sbjct:   354 SF 355

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0007623 "circadian rhythm" evidence=IMP

GO:0009909 "regulation of flower development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0006281 "DNA repair" evidence=RCA

GO:0010100 "negative regulation of photomorphogenesis" evidence=RCA

GO:0048608 "reproductive structure development" evidence=RCA

TAIR|locus:2143206 CO "CONSTANS" [Arabidopsis thaliana (taxid:3702)]

 Score = 652 (234.6 bits), Expect = 6.0e-64, P = 6.0e-64
 Identities = 161/367 (43%), Positives = 212/367 (57%)

Query:     6 CDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVTCKADA 65
             CD+C+S   TV+C ADSA+LC++CD ++H+AN++ASRH RV VCE CE+APA   C+AD 
Sbjct:    20 CDTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKRVRVCESCERAPAAFLCEADD 79

Query:    66 AALCVTCDRDIHSANPLARRHERVPVTPFYDSVDSSAVKQGNGGVVNFLDEDRYL--DHV 123
             A+LC  CD ++HSANPLARRH+RVP+ P   +  SS     +       D ++ L  D  
Sbjct:    80 ASLCTACDSEVHSANPLARRHQRVPILPISGNSFSSMTTTHHQSEKTMTDPEKRLVVDQE 139

Query:   124 DGRSGDVSREEAEAASWLLPIPKVADLNTGQAQEPYVFPDMDPYLDL-DYGH-VDTKLEA 181
             +G  GD  ++  E ASWL P    +D N        +F D   YL+L DY   +D K   
Sbjct:   140 EGEEGD--KDAKEVASWLFPN---SDKNNNNQNNGLLFSD--EYLNLVDYNSSMDYKFTG 192

Query:   182 Q----EQNSS------GTDGVVPVQTRNVNANGHLV-NDACFDLDFPGSKSYGYGYNXXX 230
             +    +QN S      G D VVP++     + GH   N   F  +     S G  YN   
Sbjct:   193 EYSQHQQNCSVPQTSYGGDRVVPLKLEE--SRGHQCHNQQNFQFNIKYGSS-GTHYNDNG 249

Query:   231 XXXXXXXXXXXXEVGVVPDGSSAMTDITNPYG-KGVGVEA----GNQ--TVVQISAADRE 283
                         E GVVP+ ++ +T  ++P   KG  VE      +Q  TV Q+S  DRE
Sbjct:   250 SINHNAYISSM-ETGVVPESTACVTTASHPRTPKGT-VEQQPDPASQMITVTQLSPMDRE 307

Query:   284 ARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDLEVEPADRSSSI-Y--G 340
             ARVLRYREKRK RKFEKTIRYASRKAYAE+RPR+ GRFAKR ++E E    ++ + Y  G
Sbjct:   308 ARVLRYREKRKTRKFEKTIRYASRKAYAEIRPRVNGRFAKR-EIEAEEQGFNTMLMYNTG 366

Query:   341 FGIVPSF 347
             +GIVPSF
Sbjct:   367 YGIVPSF 373

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA;NAS

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0007623 "circadian rhythm" evidence=IGI

GO:0009909 "regulation of flower development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0010018 "far-red light signaling pathway" evidence=IMP

GO:0010218 "response to far red light" evidence=IMP

GO:0006281 "DNA repair" evidence=RCA

GO:0010100 "negative regulation of photomorphogenesis" evidence=RCA

GO:0048608 "reproductive structure development" evidence=RCA

TAIR|locus:2074587 COL2 "CONSTANS-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
 Identities = 159/362 (43%), Positives = 210/362 (58%)

Query:     3 SKLCDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVTCK 62
             ++ CD+C+SA  TV+C ADSA+LC  CD ++HAAN++ASRH RV VC+ CE APA   CK
Sbjct:    13 ARACDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRVCQSCESAPAAFLCK 72

Query:    63 ADAAALCVTCDRDIHSANPLARRHERVPVTPFY-DSVDSSAVKQGNGGVVNFLDEDRYLD 121
             ADAA+LC  CD +IHSANPLARRH+RVP+ P   +S  S A  + +    N  DED    
Sbjct:    73 ADAASLCTACDAEIHSANPLARRHQRVPILPLSANSCSSMAPSETDAD--N--DED---- 124

Query:   122 HVDGRSGDVSREEAEAASWLLPIPKVADLNTGQAQEPYVFPDMDPYLDL-DYGH-VDTKL 179
                         + E ASWLLP P     N G     ++F  ++ YLDL DY   +D + 
Sbjct:   125 ------------DREVASWLLPNP---GKNIGNQNNGFLF-GVE-YLDLVDYSSSMDNQF 167

Query:   180 EAQE----QNSSGTDGVVPVQTRNVNANGHLV-NDACFDLDFPGSKSYGYGYNXXXXXXX 234
             E  +    Q S G DGVVP+Q     +  HL  +   F L      S G  YN       
Sbjct:   168 EDNQYTHYQRSFGGDGVVPLQVEE--STSHLQQSQQNFQLGINYGFSSGAHYNNNSLKDL 225

Query:   235 XXXXXXXX-EVGVVPDGSSAMTDITNPYGKGVGVE--AG--NQTVVQISAADREARVLRY 289
                      ++ VVP+ +++   + +P      ++  +G   Q V Q++  +REARVLRY
Sbjct:   226 NHSASVSSMDISVVPESTASDITVQHPRTTKETIDQLSGPPTQVVQQLTPMEREARVLRY 285

Query:   290 REKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDLEVEPADR-SSSIY---GFGIVP 345
             REK+K RKF+KTIRYASRKAYAE+RPRIKGRFAKR + E E  +  S+S+    G+GIVP
Sbjct:   286 REKKKTRKFDKTIRYASRKAYAEIRPRIKGRFAKRIETEAEAEEIFSTSLMSETGYGIVP 345

Query:   346 SF 347
             SF
Sbjct:   346 SF 347

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009909 "regulation of flower development" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

UNIPROTKB|Q9FE92 Hd1 "Heading day 1" [Oryza sativa (taxid:4530)]

 Score = 345 (126.5 bits), Expect = 1.3e-55, Sum P(2) = 1.3e-55
 Identities = 57/88 (64%), Positives = 74/88 (84%)

Query:     6 CDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVTCKADA 65
             CD C++A + V+CRAD+A+LC +CD ++HAAN++ASRH RV VCE CE+APA + C+ADA
Sbjct:    35 CDGCRAAPSVVYCRADAAYLCASCDARVHAANRVASRHERVRVCEACERAPAALACRADA 94

Query:    66 AALCVTCDRDIHSANPLARRHERVPVTP 93
             AALCV CD  ++SANPLARRH+RVPV P
Sbjct:    95 AALCVACDVQVYSANPLARRHQRVPVAP 122

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0010229 "inflorescence development" evidence=IGI

GO:0048571 "long-day photoperiodism" evidence=IEP

GO:0048572 "short-day photoperiodism" evidence=IEP

UNIPROTKB|Q9FDX8 HD1 "Zinc finger protein HD1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 300 (110.7 bits), Expect = 6.8e-51, Sum P(2) = 6.8e-51
 Identities = 49/77 (63%), Positives = 64/77 (83%)

Query:     6 CDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVTCKADA 65
             CD C++A + V+CRAD+A+LC +CD ++HAAN++ASRH RV VCE CE+APA + C+ADA
Sbjct:    35 CDGCRAAPSVVYCRADAAYLCASCDARVHAANRVASRHERVRVCEACERAPAALACRADA 94

Query:    66 AALCVTCDRDIHSANPL 82
             AALCV CD  +HSANPL
Sbjct:    95 AALCVACDVQVHSANPL 111

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009909 "regulation of flower development" evidence=IMP

GO:0010229 "inflorescence development" evidence=IGI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0048571 "long-day photoperiodism" evidence=IEP

GO:0048572 "short-day photoperiodism" evidence=IEP

GO:0048576 "positive regulation of short-day photoperiodism, flowering" evidence=IMP

GO:0048579 "negative regulation of long-day photoperiodism, flowering" evidence=IMP

UNIPROTKB|Q9FRZ7 Hd1 "Hd1 protein" [Oryza sativa Indica Group (taxid:39946)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 59/88 (67%), Positives = 74/88 (84%)

Query:     6 CDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVTCKADA 65
             CD C++A + V+CRAD+A+LC +CD ++HAAN++ASRH RV VCE CEQAPA + C+ADA
Sbjct:    35 CDGCRAAPSVVYCRADAAYLCASCDARVHAANRVASRHERVRVCEACEQAPAALACRADA 94

Query:    66 AALCVTCDRDIHSANPLARRHERVPVTP 93
             AALCV CD  +HSANPLARRH+RVPV P
Sbjct:    95 AALCVACDVQVHSANPLARRHQRVPVAP 122

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0010229 "inflorescence development" evidence=IGI

GO:0048571 "long-day photoperiodism" evidence=IEP

GO:0048572 "short-day photoperiodism" evidence=IEP

UNIPROTKB|Q9FRZ6 Q9FRZ6 "Hd1" [Oryza sativa (taxid:4530)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 57/88 (64%), Positives = 74/88 (84%)

Query:     6 CDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVTCKADA 65
             CD C++A + V+CRAD+A+LC +CD ++HAAN++ASRH RV VCE CE+APA + C+ADA
Sbjct:    35 CDGCRAAPSVVYCRADAAYLCASCDARVHAANRVASRHERVRVCEACERAPAALACRADA 94

Query:    66 AALCVTCDRDIHSANPLARRHERVPVTP 93
             AALCV CD  ++SANPLARRH+RVPV P
Sbjct:    95 AALCVACDVQVYSANPLARRHQRVPVAP 122

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0010229 "inflorescence development" evidence=IGI

GO:0048571 "long-day photoperiodism" evidence=IEP

GO:0048572 "short-day photoperiodism" evidence=IEP

TAIR|locus:2043288 AT2G47890 [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 5.4e-27, Sum P(2) = 5.4e-27
 Identities = 36/91 (39%), Positives = 58/91 (63%)

Query:     4 KLCDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVTCKA 63
             +LCD C S+ A V+C+ADSA LC+ CD ++H AN+L ++H R  +C+ C ++P+ + C+ 
Sbjct:    11 RLCDYCDSSVALVYCKADSAKLCLACDKQVHVANQLFAKHFRSLLCDSCNESPSSLFCET 70

Query:    64 DAAALCVTCDRDIHSANPLARRHERVPVTPF 94
             + + LC  CD   H+A+  +  H R P   F
Sbjct:    71 ERSVLCQNCDWQHHTAS--SSLHSRRPFEGF 99

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	347
pfam06203	45	pfam06203, CCT, CCT motif	2e-23
smart00336	42	smart00336, BBOX, B-Box-type zinc finger	2e-10
cd00021	39	cd00021, BBOX, B-Box-type zinc finger; zinc bindin	5e-09
cd00021	39	cd00021, BBOX, B-Box-type zinc finger; zinc bindin	8e-09
smart00336	42	smart00336, BBOX, B-Box-type zinc finger	1e-08
pfam00643	42	pfam00643, zf-B_box, B-box zinc finger	9e-05
pfam00643	42	pfam00643, zf-B_box, B-box zinc finger	3e-04

>gnl|CDD|203407 pfam06203, CCT, CCT motif

 Score = 91.1 bits (227), Expect = 2e-23
 Identities = 32/45 (71%), Positives = 39/45 (86%)

Query: 282 REARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTD 326
           REA +LRY+EKRK RKF+K IRYASRKA AE RPR+KGRF K+++
Sbjct: 1   REAALLRYKEKRKTRKFDKKIRYASRKAVAESRPRVKGRFVKQSE 45

This short motif is found in a number of plant proteins. It is rich in basic amino acids and has been called a CCT motif after Co, Col and Toc1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif. Toc1 mutants have been identified in this region. Length = 45

>gnl|CDD|197662 smart00336, BBOX, B-Box-type zinc finger

 Score = 55.0 bits (133), Expect = 2e-10
 Identities = 15/48 (31%), Positives = 18/48 (37%), Gaps = 6/48 (12%)

Query: 44 ARVWVCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPV 91
           R   C+     PA   C+   A LC TCD   H      R H  V +
Sbjct: 1  QRAPKCDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL 42

Length = 42

>gnl|CDD|237988 cd00021, BBOX, B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

 Score = 51.1 bits (123), Expect = 5e-09
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 5  LCDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWV 48
          LCD       ++FC  D A LCV+CD  +H      S H RV +
Sbjct: 2  LCDEHGEEPLSLFCETDRALLCVDCDLSVH------SGHRRVPL 39

Length = 39

>gnl|CDD|237988 cd00021, BBOX, B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

 Score = 50.4 bits (121), Expect = 8e-09
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)

Query: 47 WVCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPV 91
           +C+   + P  + C+ D A LCV CD  +H        H RVP+
Sbjct: 1  RLCDEHGEEPLSLFCETDRALLCVDCDLSVH------SGHRRVPL 39

Length = 39

>gnl|CDD|197662 smart00336, BBOX, B-Box-type zinc finger

 Score = 50.0 bits (120), Expect = 1e-08
 Identities = 14/48 (29%), Positives = 16/48 (33%), Gaps = 6/48 (12%)

Query: 1  MASKLCDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWV 48
            +  CDS     A  FC    A LC  CD   H        H  V +
Sbjct: 1  QRAPKCDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL 42

Length = 42

>gnl|CDD|216039 pfam00643, zf-B_box, B-box zinc finger

 Score = 39.0 bits (91), Expect = 9e-05
 Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 6/47 (12%)

Query: 45 RVWVCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPV 91
          +  +C   E+ P  + C+     LC  C    H      + H  VP+
Sbjct: 2  KERLCPEHEEKPLELYCEDCQQLLCEECALSGH------KGHTVVPL 42

Length = 42

>gnl|CDD|216039 pfam00643, zf-B_box, B-box zinc finger

 Score = 37.8 bits (88), Expect = 3e-04
 Identities = 7/31 (22%), Positives = 11/31 (35%)

Query: 4  KLCDSCKSATATVFCRADSAFLCVNCDTKIH 34
          +LC   +     ++C      LC  C    H
Sbjct: 4  RLCPEHEEKPLELYCEDCQQLLCEECALSGH 34

Length = 42

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	347
PF06203	45	CCT: CCT motif; InterPro: IPR010402 The CCT (CONST	99.81
cd00021	39	BBOX B-Box-type zinc finger; zinc binding domain (	97.29
cd00021	39	BBOX B-Box-type zinc finger; zinc binding domain (	97.07
smart00336	42	BBOX B-Box-type zinc finger.	96.69
KOG1601	340	consensus GATA-4/5/6 transcription factors [Transc	96.64
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	96.56
smart00336	42	BBOX B-Box-type zinc finger.	96.32
PF09425	27	CCT_2: Divergent CCT motif; InterPro: IPR018467 Th	96.19
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	95.99
KOG4367	699	consensus Predicted Zn-finger protein [Function un	94.86

>PF06203 CCT: CCT motif; InterPro: IPR010402 The CCT (CONSTANS, CO-like, and TOC1) domain is a highly conserved basic module of ~43 amino acids, which is found near the C terminus of plant proteins often involved in light signal transduction

Probab=99.81  E-value=8.1e-21  Score=135.63  Aligned_cols=45  Identities=64%  Similarity=1.082  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHhhhccccccccchhhhhhhhhCCCCCceeecCCC
Q 019028          282 REARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTD  326 (347)
Q Consensus       282 R~~~~~ry~eKr~~r~f~k~irY~~Rk~~A~~r~R~kGrf~k~~~  326 (347)
                      |+++|+||+|||++|+|+|+|+|++||++|+.|||||||||+.++
T Consensus         1 R~~~l~Ry~~Kr~~R~f~kkirY~~Rk~~A~~R~RvkGRFvk~~e   45 (45)
T PF06203_consen    1 REEKLQRYREKRKRRNFEKKIRYESRKAVADKRPRVKGRFVKKSE   45 (45)
T ss_pred             CHHHHHHHHHHHHhhcccccCCcchHHHHHhhCCccCCcccCCCC
Confidence            789999999999999999999999999999999999999999864

The CCT domain is found in association with other domains, such as the B-box zinc finger, the GATA-type zinc finger, the ZIM motif or the response regulatory domain. The CCT domain contains a putative nuclear localisation signal within the second half of the CCT motif and has been shown to be involved in nuclear localization and probably also has a role in protein-protein interaction [].; GO: 0005515 protein binding

>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

Probab=97.29  E-value=0.00016  Score=48.83  Aligned_cols=39  Identities=41%  Similarity=0.915  Sum_probs=34.0

Q ss_pred             ccccccCCCCceEEeeCCCcccccccccccccccccccccccccc
Q 019028            4 KLCDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWV   48 (347)
Q Consensus         4 ~~Cd~C~~~~A~vyC~aD~A~LC~~CDa~vH~AN~La~RH~Rv~L   48 (347)
                      ..|+.++.+++.+||..|.+.+|..|+...|.      .|.+++|
T Consensus         1 ~~C~~H~~~~~~~fC~~~~~~iC~~C~~~~H~------~H~~~~i   39 (39)
T cd00021           1 RLCDEHGEEPLSLFCETDRALLCVDCDLSVHS------GHRRVPL   39 (39)
T ss_pred             CCCCccCCcceEEEeCccChhhhhhcChhhcC------CCCEeeC
Confidence            36999998899999999999999999988775      4888764

>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

Probab=97.07  E-value=0.0003  Score=47.50  Aligned_cols=38  Identities=42%  Similarity=0.927  Sum_probs=32.5

Q ss_pred             ccccccCCCceeeccCccccccccccCCCCCCCCcCCCcccccc
Q 019028           48 VCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPV   91 (347)
Q Consensus        48 LCe~C~~~PA~v~C~~d~a~LC~~CD~~~Hsan~la~rH~Rvpv   91 (347)
                      +|+.++..|+.+||..|...||..|+...|.      .|.++||
T Consensus         2 ~C~~H~~~~~~~fC~~~~~~iC~~C~~~~H~------~H~~~~i   39 (39)
T cd00021           2 LCDEHGEEPLSLFCETDRALLCVDCDLSVHS------GHRRVPL   39 (39)
T ss_pred             CCCccCCcceEEEeCccChhhhhhcChhhcC------CCCEeeC
Confidence            5778887799999999999999999976664      7888876

>smart00336 BBOX B-Box-type zinc finger

Probab=96.69  E-value=0.0012  Score=45.21  Aligned_cols=41  Identities=37%  Similarity=0.601  Sum_probs=34.6

Q ss_pred             cccccccccCCCceeeccCccccccccccCCCCCCCCcCCCcccccc
Q 019028           45 RVWVCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPV   91 (347)
Q Consensus        45 Rv~LCe~C~~~PA~v~C~~d~a~LC~~CD~~~Hsan~la~rH~Rvpv   91 (347)
                      |.++|+.++..++.+||..|...||..|....|      +.|.++||
T Consensus         2 ~~~~C~~h~~~~~~~~C~~c~~~iC~~C~~~~H------~~H~~~~l   42 (42)
T smart00336        2 RPPKCDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL   42 (42)
T ss_pred             cCCcCCCCCCCceEEECCCCCcccccccChhhc------CCCceecC
Confidence            577899998889999999999999999986555      56777765

>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]

Probab=96.64  E-value=0.00061  Score=61.98  Aligned_cols=95  Identities=24%  Similarity=0.273  Sum_probs=68.7

Q ss_pred             CccccccCCCCceEEeeCCCcccccccccccccccccccccccccccccccCCCce--eeccCccccc----cccccCCC
Q 019028            3 SKLCDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAH--VTCKADAAAL----CVTCDRDI   76 (347)
Q Consensus         3 ~~~Cd~C~~~~A~vyC~aD~A~LC~~CDa~vH~AN~La~RH~Rv~LCe~C~~~PA~--v~C~~d~a~L----C~~CD~~~   76 (347)
                      ...|+.|....... |..|.+.+|..|+.+++..+.+...|.++.++..+...++.  +.+..+...+    +..+....
T Consensus         5 ~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (340)
T KOG1601|consen    5 AEDLDSCRFDDLLN-LNADDSLLDISVDARLSASNSLAFPHEPTRLSSSPESFVAATSFSIDLSVPSLDMPGLEGFSLFV   83 (340)
T ss_pred             cccccccCcccccc-cccccccCCcccccccccccccccccccccccchhhhhhcccccccccccccccccccccccccc
Confidence            34577777766666 99999999999999999998777788999999887633322  4444444445    55577667


Q ss_pred             CCCCCcCCCcccccccCCCCCC
Q 019028           77 HSANPLARRHERVPVTPFYDSV   98 (347)
Q Consensus        77 Hsan~la~rH~Rvpv~~~~~~~   98 (347)
                      |..++...+|..+++.+.....
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~  105 (340)
T KOG1601|consen   84 SENNPNSLRHPPVPSMPSSNSS  105 (340)
T ss_pred             ccccCCCCCCCCcccccccccc
Confidence            7777777788877766665443

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.56  E-value=0.00095  Score=46.19  Aligned_cols=40  Identities=25%  Similarity=0.507  Sum_probs=33.4

Q ss_pred             ccccccccCCCceeeccCccccccccccCCCCCCCCcCCCcccccc
Q 019028           46 VWVCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPV   91 (347)
Q Consensus        46 v~LCe~C~~~PA~v~C~~d~a~LC~~CD~~~Hsan~la~rH~Rvpv   91 (347)
                      .++|..++..++.+||..|...||..|....|..      |..+||
T Consensus         3 ~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~~------H~~~~i   42 (42)
T PF00643_consen    3 EPKCPEHPEEPLSLFCEDCNEPLCSECTVSGHKG------HKIVPI   42 (42)
T ss_dssp             SSB-SSTTTSBEEEEETTTTEEEEHHHHHTSTTT------SEEEEC
T ss_pred             CccCccCCccceEEEecCCCCccCccCCCCCCCC------CEEeEC
Confidence            4678889988899999999999999999766754      888876

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

>smart00336 BBOX B-Box-type zinc finger

Probab=96.32  E-value=0.003  Score=43.15  Aligned_cols=40  Identities=35%  Similarity=0.651  Sum_probs=33.5

Q ss_pred             CccccccCCCCceEEeeCCCcccccccccccccccccccccccccc
Q 019028            3 SKLCDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWV   48 (347)
Q Consensus         3 ~~~Cd~C~~~~A~vyC~aD~A~LC~~CDa~vH~AN~La~RH~Rv~L   48 (347)
                      .+.|..|...++.+||..|.+.+|..|....|      +.|.+++|
T Consensus         3 ~~~C~~h~~~~~~~~C~~c~~~iC~~C~~~~H------~~H~~~~l   42 (42)
T smart00336        3 PPKCDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL   42 (42)
T ss_pred             CCcCCCCCCCceEEECCCCCcccccccChhhc------CCCceecC
Confidence            46799999889999999999999999998767      34776653

>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1

Probab=96.19  E-value=0.0028  Score=40.95  Aligned_cols=25  Identities=36%  Similarity=0.494  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHHhhhccccccccch
Q 019028          280 ADREARVLRYREKRKNRKFEKTIRYA  305 (347)
Q Consensus       280 ~~R~~~~~ry~eKr~~r~f~k~irY~  305 (347)
                      ..|.+.|+||.||||.|... +..|.
T Consensus         2 ~aRK~SLqRFLeKRK~R~~~-~~PY~   26 (27)
T PF09425_consen    2 IARKASLQRFLEKRKDRLAA-KSPYQ   26 (27)
T ss_dssp             ----HHHHHHHHHH------------
T ss_pred             chHHHHHHHHHHHHHHhhcc-CCCCC
Confidence            57999999999999999987 66664

The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.99  E-value=0.0043  Score=42.88  Aligned_cols=40  Identities=23%  Similarity=0.458  Sum_probs=34.0

Q ss_pred             CccccccCCCCceEEeeCCCcccccccccccccccccccccccccc
Q 019028            3 SKLCDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWV   48 (347)
Q Consensus         3 ~~~Cd~C~~~~A~vyC~aD~A~LC~~CDa~vH~AN~La~RH~Rv~L   48 (347)
                      ...|+.|...++.+||..+...||..|....|..      |..++|
T Consensus         3 ~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~~------H~~~~i   42 (42)
T PF00643_consen    3 EPKCPEHPEEPLSLFCEDCNEPLCSECTVSGHKG------HKIVPI   42 (42)
T ss_dssp             SSB-SSTTTSBEEEEETTTTEEEEHHHHHTSTTT------SEEEEC
T ss_pred             CccCccCCccceEEEecCCCCccCccCCCCCCCC------CEEeEC
Confidence            4689999998899999999999999999998864      776654

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=94.86  E-value=0.008  Score=61.63  Aligned_cols=76  Identities=25%  Similarity=0.516  Sum_probs=58.6

Q ss_pred             CccccccCCCC--ceEEeeCCCcccccccccccccccccccccccccccc-------------cccCCC---ceeeccCc
Q 019028            3 SKLCDSCKSAT--ATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCE-------------VCEQAP---AHVTCKAD   64 (347)
Q Consensus         3 ~~~Cd~C~~~~--A~vyC~aD~A~LC~~CDa~vH~AN~La~RH~Rv~LCe-------------~C~~~P---A~v~C~~d   64 (347)
                      +-.|..|++++  |+|+|..+..+.|.-|..+.|-+-.-..+|.-++--+             .|..+|   -.+||.+|
T Consensus       162 a~kcqlce~a~k~a~v~ceqcdv~yc~pc~~~~hp~rgplakh~l~~~~~grvs~~~s~r~~~~ct~h~~e~~smyc~~c  241 (699)
T KOG4367|consen  162 ALKCQLCEKAPKEATVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVSRRLSPRKVSTCTDHELENHSMYCVQC  241 (699)
T ss_pred             hhhhhhhcCChhhhhhhHhhCceEEechHHhccCCCCCchhhcccCCcccCceeeccchhhhhhccCCCCCCceEEEEec
Confidence            34699999887  9999999999999999999997666566665443321             265554   57899999


Q ss_pred             ccccccccc-CCCCC
Q 019028           65 AAALCVTCD-RDIHS   78 (347)
Q Consensus        65 ~a~LC~~CD-~~~Hs   78 (347)
                      .+++|-.|- .+-|+
T Consensus       242 k~pvc~~clee~khs  256 (699)
T KOG4367|consen  242 KMPVCYQCLEEGKHS  256 (699)
T ss_pred             CChHHHHHHHhhccc
Confidence            999999996 34443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	347
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	2e-04

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens} Length = 101

 Score = 39.2 bits (91), Expect = 2e-04
 Identities = 16/78 (20%), Positives = 22/78 (28%), Gaps = 10/78 (12%)

Query: 5  LCDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHA----------RVWVCEVCEQ 54
           CD   +  A   C       C  C    H   K  + H           R  +C   E 
Sbjct: 8  FCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMCLEHED 67

Query: 55 APAHVTCKADAAALCVTC 72
             ++ C  D   +C  C
Sbjct: 68 EKVNMYCVTDDQLICALC 85

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	347
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	98.09
3ogl_Q	21	JAZ1 incomplete degron peptide; leucine-rich repea	95.5
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	94.05
3ogk_Q	22	JAZ1 incomplete degron peptide; leucine rich repea	93.75
2ffw_A	78	Midline-1; B-BOX, ring finger, zinc-finger, ligase	91.11
2d8u_A	64	Ubiquitin ligase TRIM63; tripartite motif-containi	90.43
2yvr_A	50	Transcription intermediary factor 1-beta; ZF-B_BOX	88.17
2did_A	53	Tripartite motif protein 39; ZF-B-box domian, Zn b	85.74
2dja_A	84	Midline-2; tripartite motif protein 1, ZF-B_BOX, s	80.33

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=98.09  E-value=1.7e-06  Score=69.21  Aligned_cols=84  Identities=20%  Similarity=0.429  Sum_probs=66.0

Q ss_pred             CccccccCC---CCceEEeeCCCcccccccccccccccccccccccc-ccc------ccccCC---CceeeccCcccccc
Q 019028            3 SKLCDSCKS---ATATVFCRADSAFLCVNCDTKIHAANKLASRHARV-WVC------EVCEQA---PAHVTCKADAAALC   69 (347)
Q Consensus         3 ~~~Cd~C~~---~~A~vyC~aD~A~LC~~CDa~vH~AN~La~RH~Rv-~LC------e~C~~~---PA~v~C~~d~a~LC   69 (347)
                      ...|+.|..   .+|+.+|..+.+.||..|...+|..+....+|..+ ++-      ..|..+   +-.+||..|...+|
T Consensus         3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~~~~~~~~~C~~H~~e~l~~fC~~~~~~iC   82 (101)
T 2jun_A            3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMCLEHEDEKVNMYCVTDDQLIC   82 (101)
T ss_dssp             CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCCSCCSSCCCCSSCSSSCCCEEETTTTEEEC
T ss_pred             CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeeeccccccCccCCcCcCcCCCcceEECCCCCCccc
Confidence            357999984   68999999999999999999999888777888876 221      135544   46889999999999


Q ss_pred             ccccC-CCCCCCCcCCCccccccc
Q 019028           70 VTCDR-DIHSANPLARRHERVPVT   92 (347)
Q Consensus        70 ~~CD~-~~Hsan~la~rH~Rvpv~   92 (347)
                      ..|.. +.|.      .|..+||.
T Consensus        83 ~~C~~~~~H~------~H~~~~l~  100 (101)
T 2jun_A           83 ALCKLVGRHR------DHQVAALS  100 (101)
T ss_dssp             HHHHHHTTTS------SSCBCCCC
T ss_pred             hhcCCCCCcC------CCCeecCC
Confidence            99984 6664      46666664

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=94.05  E-value=0.016  Score=45.75  Aligned_cols=43  Identities=23%  Similarity=0.495  Sum_probs=36.9

Q ss_pred             cccccccC---CCceeeccCccccccccccCCCCCCCCcCCCcccc
Q 019028           47 WVCEVCEQ---APAHVTCKADAAALCVTCDRDIHSANPLARRHERV   89 (347)
Q Consensus        47 ~LCe~C~~---~PA~v~C~~d~a~LC~~CD~~~Hsan~la~rH~Rv   89 (347)
                      ..|++|..   .+|..+|..|...+|..|....|..+....+|+++
T Consensus         4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~   49 (101)
T 2jun_A            4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI   49 (101)
T ss_dssp             CBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBS
T ss_pred             CCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeee
Confidence            46899974   58999999999999999998888877767888877

>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}

Probab=93.75  E-value=0.019  Score=34.58  Aligned_cols=19  Identities=47%  Similarity=0.630  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHhhhccccc
Q 019028          282 REARVLRYREKRKNRKFEK  300 (347)
Q Consensus       282 R~~~~~ry~eKr~~r~f~k  300 (347)
                      |.+.|+||.||||.|...+
T Consensus         1 Rk~SLqRFleKRk~R~~~~   19 (22)
T 3ogk_Q            1 RRASLHRFLEKRKDRVTSK   19 (26)
T ss_pred             CchhHHHHHHHHHHHhhcc
Confidence            5788999999999987654

>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}

Probab=91.11  E-value=0.065  Score=41.24  Aligned_cols=45  Identities=22%  Similarity=0.457  Sum_probs=37.4

Q ss_pred             ccccccccC---CCceeeccCccccccccccCCCCCCCCcCCCccccc
Q 019028           46 VWVCEVCEQ---APAHVTCKADAAALCVTCDRDIHSANPLARRHERVP   90 (347)
Q Consensus        46 v~LCe~C~~---~PA~v~C~~d~a~LC~~CD~~~Hsan~la~rH~Rvp   90 (347)
                      ...|++|..   .+|..+|..|.+++|..|-...|...+...+|+.+.
T Consensus        30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L~~   77 (78)
T 2ffw_A           30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIE   77 (78)
T ss_dssp             CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCCSC
T ss_pred             CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCcccC
Confidence            467999975   568999999999999999887788777778888764

>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=90.43  E-value=0.17  Score=36.66  Aligned_cols=50  Identities=18%  Similarity=0.397  Sum_probs=37.3

Q ss_pred             ccccccccccccCCCceeeccCcccccccccc-CCCCCCCCcCCCcccccccCCCCC
Q 019028           42 RHARVWVCEVCEQAPAHVTCKADAAALCVTCD-RDIHSANPLARRHERVPVTPFYDS   97 (347)
Q Consensus        42 RH~Rv~LCe~C~~~PA~v~C~~d~a~LC~~CD-~~~Hsan~la~rH~Rvpv~~~~~~   97 (347)
                      +..+..+|..-...+-.+||..|...+|..|. .+.|.      .|..+||..++..
T Consensus         4 ~~~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~~a~~~   54 (64)
T 2d8u_A            4 GSSGHPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQSVFQG   54 (64)
T ss_dssp             CCCCCCCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTT------SSCEECTTTCCSS
T ss_pred             CCCCCCcCcCcCCCccceEcCcCCceeCccccCCCcCC------CCCeeCHHHHHHH
Confidence            34455667666556778999999999999997 55663      5888888877643

>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}

Probab=88.17  E-value=0.19  Score=34.75  Aligned_cols=46  Identities=20%  Similarity=0.421  Sum_probs=33.1

Q ss_pred             ccccccccccCCCceeeccCccccccccccCCCCCCCCcCCCcccccccCCC
Q 019028           44 ARVWVCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVTPFY   95 (347)
Q Consensus        44 ~Rv~LCe~C~~~PA~v~C~~d~a~LC~~CD~~~Hsan~la~rH~Rvpv~~~~   95 (347)
                      .+..+|+.-...+-.+||..|...+|..|..+.|      +.|..+||..++
T Consensus         4 ~~~~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H------~~H~~~~l~ea~   49 (50)
T 2yvr_A            4 ERTVYCNVHKHEPLVLFCESCDTLTCRDCQLNAH------KDHQYQFLEDAV   49 (50)
T ss_dssp             CCSCBCSSSTTCBCCEEETTTTEEECHHHHHTTT------TTCCEEETTC--
T ss_pred             cCCCcCcCCCCCCEEEEeCCCCEEEecccCCCcC------CCCceecHHHHh
Confidence            4455666664556789999999999999976555      368888887653

>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A

Probab=85.74  E-value=0.49  Score=33.07  Aligned_cols=42  Identities=26%  Similarity=0.524  Sum_probs=31.7

Q ss_pred             cccccccCCCceeeccCccccccccccC-CCCCCCCcCCCcccccccCCC
Q 019028           47 WVCEVCEQAPAHVTCKADAAALCVTCDR-DIHSANPLARRHERVPVTPFY   95 (347)
Q Consensus        47 ~LCe~C~~~PA~v~C~~d~a~LC~~CD~-~~Hsan~la~rH~Rvpv~~~~   95 (347)
                      .+|+.-. .+-.+||..|...+|..|.. +-|      +.|..+||..++
T Consensus         9 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~ea~   51 (53)
T 2did_A            9 SLCPQHH-EALSLFCYEDQEAVCLICAISHTH------RAHTVVPLSGPS   51 (53)
T ss_dssp             CBCTTTC-CBCCEEESSSCSEECHHHHTSSTT------TTSCEEECCCTT
T ss_pred             CcChhhC-CeeeEEeCCCCeEEeccccCCCCC------CCCcEeeHHHHh
Confidence            3455554 46788999999999999974 555      468888887765

>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A

Probab=80.33  E-value=0.94  Score=34.36  Aligned_cols=46  Identities=20%  Similarity=0.447  Sum_probs=33.7

Q ss_pred             ccccccccCCCceeeccCccccccccccC-CCCCCCCcCCCcccccccCCCCC
Q 019028           46 VWVCEVCEQAPAHVTCKADAAALCVTCDR-DIHSANPLARRHERVPVTPFYDS   97 (347)
Q Consensus        46 v~LCe~C~~~PA~v~C~~d~a~LC~~CD~-~~Hsan~la~rH~Rvpv~~~~~~   97 (347)
                      ..+|+.-+..+-.+||..|...+|..|.. +-|      +.|..+||..++..
T Consensus        18 ~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~ea~~~   64 (84)
T 2dja_A           18 GITCLDHENEKVNMYCVSDDQLICALCKLVGRH------RDHQVASLNDRFEK   64 (84)
T ss_dssp             CCCCSSCSSSCCCEEETTTTEEECHHHHHTSTT------TTCCBCCCCSSCCC
T ss_pred             CCcCcCcCCccccEEcCCCCceEcccCcCCCCC------CCCCccCHHHHHHH
Confidence            34555544456789999999999999974 655      46888888877643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	347
d2djaa1	71	Midline-2 {Human (Homo sapiens) [TaxId: 9606]}	93.64
d2dq5a1	47	Midline-1 {Human (Homo sapiens) [TaxId: 9606]}	90.37
d2d8ua1	51	Ubiquitin ligase trim63 {Human (Homo sapiens) [Tax	90.28
d1frea_	39	Nuclear factor XNF7 {African clawed frog (Xenopus	84.9

>d2djaa1 g.43.1.1 (A:8-78) Midline-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.64  E-value=0.02  Score=41.16  Aligned_cols=54  Identities=20%  Similarity=0.452  Sum_probs=42.5

Q ss_pred             ccccccccccccccccCCCceeeccCcccccccccc-CCCCCCCCcCCCcccccccCCCCC
Q 019028           38 KLASRHARVWVCEVCEQAPAHVTCKADAAALCVTCD-RDIHSANPLARRHERVPVTPFYDS   97 (347)
Q Consensus        38 ~La~RH~Rv~LCe~C~~~PA~v~C~~d~a~LC~~CD-~~~Hsan~la~rH~Rvpv~~~~~~   97 (347)
                      ++...+.|...|......+..+||..|...+|..|. .+.|      ..|..++|..++..
T Consensus         3 P~~~~~~r~~~C~~H~~e~l~~fC~~C~~~iC~~C~~~~~H------k~H~~~~i~~a~~~   57 (71)
T d2djaa1           3 PVPDTHLRGITCLDHENEKVNMYCVSDDQLICALCKLVGRH------RDHQVASLNDRFEK   57 (71)
T ss_dssp             CCCCCCSSCCCCSSCSSSCCCEEETTTTEEECHHHHHTSTT------TTCCBCCCCSSCCC
T ss_pred             CCCccccCCCcCcccCCccceeEcCCCCceeccccccCCCC------CCCcCcCHHHHHHH
Confidence            344567788888887777889999999999999996 5555      35888888877643

>d2dq5a1 g.43.1.1 (A:168-214) Midline-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.37  E-value=0.062  Score=35.91  Aligned_cols=44  Identities=23%  Similarity=0.508  Sum_probs=33.8

Q ss_pred             cccccccccccCCCceeeccCcccccccccc-CCCCCCCCcCCCccccccc
Q 019028           43 HARVWVCEVCEQAPAHVTCKADAAALCVTCD-RDIHSANPLARRHERVPVT   92 (347)
Q Consensus        43 H~Rv~LCe~C~~~PA~v~C~~d~a~LC~~CD-~~~Hsan~la~rH~Rvpv~   92 (347)
                      |.|..+|..-...+-.+||..|..++|..|. .+.|.      .|+-.+|.
T Consensus         2 ~l~~~~C~~H~~e~l~~yC~~C~~~iC~~C~~~~~H~------~H~~~~l~   46 (47)
T d2dq5a1           2 HIRGLMCLEHEDEKVNMYCVTDDQLICALCKLVGRHR------DHQVAALS   46 (47)
T ss_dssp             CCCCCBCSSCTTSBEEEEETTTTEEEEHHHHHTSSTT------SSCCCCSC
T ss_pred             CccCccchhhCCCcceEEcCCCCccCCccCcCcCCcC------CCeEeeCC
Confidence            5677777766666778999999999999996 56663      47766664

>d2d8ua1 g.43.1.1 (A:8-58) Ubiquitin ligase trim63 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Ubiquitin ligase trim63
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.28  E-value=0.076  Score=35.97  Aligned_cols=44  Identities=20%  Similarity=0.491  Sum_probs=33.5

Q ss_pred             cccccccCCCceeeccCcccccccccc-CCCCCCCCcCCCcccccccCCCC
Q 019028           47 WVCEVCEQAPAHVTCKADAAALCVTCD-RDIHSANPLARRHERVPVTPFYD   96 (347)
Q Consensus        47 ~LCe~C~~~PA~v~C~~d~a~LC~~CD-~~~Hsan~la~rH~Rvpv~~~~~   96 (347)
                      |+|..-...+-.+||..|..++|..|. .+.|      +.|.-.+|..++.
T Consensus         2 p~C~~H~~e~l~~yC~~c~~~iC~~C~~~~~H------k~H~v~~l~~a~~   46 (51)
T d2d8ua1           2 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH------KACEVAPLQSVFQ   46 (51)
T ss_dssp             CCCSSCTTCCCCSEESSSCCCCCSHHHHSSST------TSSCEECTTTCCS
T ss_pred             CCCcccCcCcceEEcCCCCceECccccCcCCc------CcCcCcCHHHHHH
Confidence            455555555778999999999999996 5666      3488888877664

>d1frea_ g.43.1.1 (A:) Nuclear factor XNF7 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Nuclear factor XNF7
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=84.90  E-value=0.28  Score=31.42  Aligned_cols=30  Identities=30%  Similarity=0.621  Sum_probs=23.0

Q ss_pred             CceeeccCcccccccccc-CCCCCCCCcCCCcccccc
Q 019028           56 PAHVTCKADAAALCVTCD-RDIHSANPLARRHERVPV   91 (347)
Q Consensus        56 PA~v~C~~d~a~LC~~CD-~~~Hsan~la~rH~Rvpv   91 (347)
                      +-.+||..|...+|..|. .+.|      +.|.-+||
T Consensus         9 ~l~lfC~~d~~~iC~~C~~~~~H------~~H~v~pi   39 (39)
T d1frea_           9 RLKLYCKDDGTLSCVICRDSLKH------ASHNFLPI   39 (39)
T ss_dssp             SCCCCCCSSSSSSCCTTSSCSSC------TTCCCCCC
T ss_pred             ceeEEcccCCcEeeccCcCCCCc------CCCcEeeC
Confidence            557899999999999996 4444      35766665