Citrus Sinensis ID: 019039
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 347 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LSD6 | 389 | Actin-related protein 2 O | yes | no | 0.916 | 0.817 | 0.893 | 1e-172 | |
| Q6Z256 | 389 | Actin-related protein 2 O | yes | no | 0.942 | 0.840 | 0.865 | 1e-172 | |
| A2YUL5 | 389 | Actin-related protein 2 O | N/A | no | 0.942 | 0.840 | 0.865 | 1e-172 | |
| O96621 | 392 | Actin-related protein 2 O | yes | no | 0.916 | 0.811 | 0.633 | 1e-124 | |
| P53487 | 388 | Actin-related protein 2 O | N/A | no | 0.913 | 0.817 | 0.637 | 1e-123 | |
| P53488 | 394 | Actin-related protein 2 O | yes | no | 0.907 | 0.799 | 0.636 | 1e-121 | |
| Q7ZTP2 | 394 | Actin-related protein 2-A | N/A | no | 0.907 | 0.799 | 0.636 | 1e-121 | |
| Q5M7U6 | 394 | Actin-related protein 2 O | yes | no | 0.907 | 0.799 | 0.636 | 1e-121 | |
| Q5BL41 | 394 | Actin-related protein 2 O | yes | no | 0.907 | 0.799 | 0.639 | 1e-121 | |
| P61161 | 394 | Actin-related protein 2 O | yes | no | 0.907 | 0.799 | 0.636 | 1e-121 |
| >sp|Q9LSD6|ARP2_ARATH Actin-related protein 2 OS=Arabidopsis thaliana GN=ARP2 PE=1 SV=1 | Back alignment and function desciption |
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Score = 605 bits (1560), Expect = e-172, Method: Compositional matrix adjust.
Identities = 284/318 (89%), Positives = 305/318 (95%)
Query: 1 MDNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAAL 60
MDN+NVVVCDNGTGYVKCGFAGENFP SVFPCVVGRP+LRYEESLMEQ++KD +VG
Sbjct: 1 MDNKNVVVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLMEQQVKDIVVGETCS 60
Query: 61 DLRHQLDVSYPVNNGIVQNWEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKM 120
+LRHQLD++YPV+NGIVQNW+DM VWDHAF++ELKI+P +CKILLTDPPLNP+KNREKM
Sbjct: 61 ELRHQLDINYPVHNGIVQNWDDMEHVWDHAFYNELKINPSDCKILLTDPPLNPSKNREKM 120
Query: 121 VETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMN 180
+ETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMN
Sbjct: 121 IETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMN 180
Query: 181 VAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTILVKN 240
VAGRHIT+YLVDLLSRRGY+MN+TADFETVR+IKEKLCYISYDYKRE QLGLETTILVKN
Sbjct: 181 VAGRHITAYLVDLLSRRGYAMNKTADFETVREIKEKLCYISYDYKRESQLGLETTILVKN 240
Query: 241 YTLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVL 300
YTLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVL
Sbjct: 241 YTLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVL 300
Query: 301 SGGSTMYPGLPSRYYVEL 318
SGGSTMYPGLPSR E+
Sbjct: 301 SGGSTMYPGLPSRLEKEI 318
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Functions as ATP-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the pointed end of the daughter actin filament (By similarity). Involved in the control of cell morphogenesis in leaf epidermal pavement cells, root hairs, hypocotyls epidermal cells and trichomes, especially during rapid cell expansion. Regulates the directionality of cell expansion by regulating the actin organization, and thus the microtubules distribution and the fusion of small vacuoles. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q6Z256|ARP2_ORYSJ Actin-related protein 2 OS=Oryza sativa subsp. japonica GN=ARP2 PE=3 SV=1 | Back alignment and function description |
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| >sp|A2YUL5|ARP2_ORYSI Actin-related protein 2 OS=Oryza sativa subsp. indica GN=ARP2 PE=2 SV=2 | Back alignment and function description |
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| >sp|O96621|ARP2_DICDI Actin-related protein 2 OS=Dictyostelium discoideum GN=arpB PE=1 SV=1 | Back alignment and function description |
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| >sp|P53487|ARP2_ACACA Actin-related protein 2 OS=Acanthamoeba castellanii GN=arp2 PE=2 SV=1 | Back alignment and function description |
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| >sp|P53488|ARP2_CHICK Actin-related protein 2 OS=Gallus gallus GN=ACTR2 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q7ZTP2|ARP2A_XENLA Actin-related protein 2-A OS=Xenopus laevis GN=actr2-a PE=2 SV=1 | Back alignment and function description |
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| >sp|Q5M7U6|ARP2_RAT Actin-related protein 2 OS=Rattus norvegicus GN=Actr2 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q5BL41|ARP2_XENTR Actin-related protein 2 OS=Xenopus tropicalis GN=actr2 PE=2 SV=1 | Back alignment and function description |
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| >sp|P61161|ARP2_MOUSE Actin-related protein 2 OS=Mus musculus GN=Actr2 PE=1 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 347 | ||||||
| 255543673 | 387 | Actin, putative [Ricinus communis] gi|22 | 0.919 | 0.824 | 0.924 | 1e-176 | |
| 225451511 | 389 | PREDICTED: actin-related protein 2 [Viti | 0.919 | 0.820 | 0.924 | 1e-176 | |
| 224055767 | 389 | predicted protein [Populus trichocarpa] | 0.919 | 0.820 | 0.918 | 1e-174 | |
| 356571581 | 389 | PREDICTED: actin-related protein 2-like | 0.942 | 0.840 | 0.899 | 1e-174 | |
| 449441714 | 389 | PREDICTED: actin-related protein 2-like | 0.919 | 0.820 | 0.909 | 1e-173 | |
| 414888207 | 389 | TPA: hypothetical protein ZEAMMB73_37383 | 0.942 | 0.840 | 0.880 | 1e-172 | |
| 312282303 | 389 | unnamed protein product [Thellungiella h | 0.916 | 0.817 | 0.899 | 1e-172 | |
| 356561616 | 389 | PREDICTED: actin-related protein 2-like | 0.942 | 0.840 | 0.889 | 1e-172 | |
| 297818252 | 389 | hypothetical protein ARALYDRAFT_484485 [ | 0.916 | 0.817 | 0.896 | 1e-171 | |
| 449490061 | 390 | PREDICTED: actin-related protein 2-like | 0.919 | 0.817 | 0.903 | 1e-171 |
| >gi|255543673|ref|XP_002512899.1| Actin, putative [Ricinus communis] gi|223547910|gb|EEF49402.1| Actin, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 624 bits (1610), Expect = e-176, Method: Compositional matrix adjust.
Identities = 295/319 (92%), Positives = 307/319 (96%)
Query: 1 MDNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAAL 60
MDNRNV+VCDNGTGYVKCGFAGENFP SVFPCVVGRPMLRYEESLME++LKD +VG A
Sbjct: 1 MDNRNVIVCDNGTGYVKCGFAGENFPTSVFPCVVGRPMLRYEESLMEEQLKDAVVGEACA 60
Query: 61 DLRHQLDVSYPVNNGIVQNWEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKM 120
DLRHQLD+SYPVNNGIVQNW+DMG VWDHAFF+ELKIDP ECKILLTDPPLNP+KNREKM
Sbjct: 61 DLRHQLDISYPVNNGIVQNWDDMGHVWDHAFFNELKIDPTECKILLTDPPLNPSKNREKM 120
Query: 121 VETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMN 180
VETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMN
Sbjct: 121 VETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMN 180
Query: 181 VAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTILVKN 240
VAGRHITSYLVDLLSRRGY+MNRTADFE VR+IKEKLCYISYDYKREYQLGLETTILVKN
Sbjct: 181 VAGRHITSYLVDLLSRRGYAMNRTADFEAVREIKEKLCYISYDYKREYQLGLETTILVKN 240
Query: 241 YTLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVL 300
YTLPDGRVIKVGTERFQAPEALFTPELID+EGDGMADMVFRCIQEMDIDNRMMLYQHIVL
Sbjct: 241 YTLPDGRVIKVGTERFQAPEALFTPELIDIEGDGMADMVFRCIQEMDIDNRMMLYQHIVL 300
Query: 301 SGGSTMYPGLPSRYYVELF 319
SGGSTMYPGLPSR E+
Sbjct: 301 SGGSTMYPGLPSRLEKEIL 319
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225451511|ref|XP_002272485.1| PREDICTED: actin-related protein 2 [Vitis vinifera] gi|296082315|emb|CBI21320.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224055767|ref|XP_002298643.1| predicted protein [Populus trichocarpa] gi|222845901|gb|EEE83448.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356571581|ref|XP_003553955.1| PREDICTED: actin-related protein 2-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|449441714|ref|XP_004138627.1| PREDICTED: actin-related protein 2-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|414888207|tpg|DAA64221.1| TPA: hypothetical protein ZEAMMB73_373831 [Zea mays] | Back alignment and taxonomy information |
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| >gi|312282303|dbj|BAJ34017.1| unnamed protein product [Thellungiella halophila] | Back alignment and taxonomy information |
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| >gi|356561616|ref|XP_003549077.1| PREDICTED: actin-related protein 2-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|297818252|ref|XP_002877009.1| hypothetical protein ARALYDRAFT_484485 [Arabidopsis lyrata subsp. lyrata] gi|297322847|gb|EFH53268.1| hypothetical protein ARALYDRAFT_484485 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|449490061|ref|XP_004158496.1| PREDICTED: actin-related protein 2-like [Cucumis sativus] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 347 | ||||||
| TAIR|locus:2092005 | 389 | ARP2 "AT3G27000" [Arabidopsis | 0.916 | 0.817 | 0.893 | 2.1e-157 | |
| DICTYBASE|DDB_G0272106 | 392 | arpB "polyphosphate kinase com | 0.916 | 0.811 | 0.633 | 1.9e-113 | |
| UNIPROTKB|P53488 | 394 | ACTR2 "Actin-related protein 2 | 0.907 | 0.799 | 0.636 | 4.2e-111 | |
| UNIPROTKB|A7MB62 | 394 | ACTR2 "Actin-related protein 2 | 0.916 | 0.807 | 0.632 | 4.2e-111 | |
| UNIPROTKB|P61160 | 394 | ACTR2 "Actin-related protein 2 | 0.916 | 0.807 | 0.632 | 4.2e-111 | |
| UNIPROTKB|B5APU3 | 394 | ACTR2 "Actin-related protein 2 | 0.916 | 0.807 | 0.632 | 4.2e-111 | |
| MGI|MGI:1913963 | 394 | Actr2 "ARP2 actin-related prot | 0.916 | 0.807 | 0.632 | 4.2e-111 | |
| RGD|1310826 | 394 | Actr2 "ARP2 actin-related prot | 0.916 | 0.807 | 0.632 | 4.2e-111 | |
| UNIPROTKB|Q5M7U6 | 394 | Actr2 "Actin-related protein 2 | 0.916 | 0.807 | 0.632 | 4.2e-111 | |
| ZFIN|ZDB-GENE-040426-2894 | 394 | actr2a "ARP2 actin-related pro | 0.916 | 0.807 | 0.629 | 3.8e-110 |
| TAIR|locus:2092005 ARP2 "AT3G27000" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1534 (545.1 bits), Expect = 2.1e-157, P = 2.1e-157
Identities = 284/318 (89%), Positives = 305/318 (95%)
Query: 1 MDNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAAL 60
MDN+NVVVCDNGTGYVKCGFAGENFP SVFPCVVGRP+LRYEESLMEQ++KD +VG
Sbjct: 1 MDNKNVVVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLMEQQVKDIVVGETCS 60
Query: 61 DLRHQLDVSYPVNNGIVQNWEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKM 120
+LRHQLD++YPV+NGIVQNW+DM VWDHAF++ELKI+P +CKILLTDPPLNP+KNREKM
Sbjct: 61 ELRHQLDINYPVHNGIVQNWDDMEHVWDHAFYNELKINPSDCKILLTDPPLNPSKNREKM 120
Query: 121 VETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMN 180
+ETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMN
Sbjct: 121 IETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMN 180
Query: 181 VAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTILVKN 240
VAGRHIT+YLVDLLSRRGY+MN+TADFETVR+IKEKLCYISYDYKRE QLGLETTILVKN
Sbjct: 181 VAGRHITAYLVDLLSRRGYAMNKTADFETVREIKEKLCYISYDYKRESQLGLETTILVKN 240
Query: 241 YTLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVL 300
YTLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVL
Sbjct: 241 YTLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVL 300
Query: 301 SGGSTMYPGLPSRYYVEL 318
SGGSTMYPGLPSR E+
Sbjct: 301 SGGSTMYPGLPSRLEKEI 318
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| DICTYBASE|DDB_G0272106 arpB "polyphosphate kinase component" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| UNIPROTKB|P53488 ACTR2 "Actin-related protein 2" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|A7MB62 ACTR2 "Actin-related protein 2" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|P61160 ACTR2 "Actin-related protein 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|B5APU3 ACTR2 "Actin-related protein 2-like protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| MGI|MGI:1913963 Actr2 "ARP2 actin-related protein 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| RGD|1310826 Actr2 "ARP2 actin-related protein 2 homolog (yeast)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q5M7U6 Actr2 "Actin-related protein 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-040426-2894 actr2a "ARP2 actin-related protein 2a homolog (yeast)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q6Z256 | ARP2_ORYSJ | No assigned EC number | 0.8654 | 0.9423 | 0.8406 | yes | no |
| P61160 | ARP2_HUMAN | No assigned EC number | 0.6360 | 0.9077 | 0.7994 | yes | no |
| P61161 | ARP2_MOUSE | No assigned EC number | 0.6360 | 0.9077 | 0.7994 | yes | no |
| P53488 | ARP2_CHICK | No assigned EC number | 0.6360 | 0.9077 | 0.7994 | yes | no |
| P53489 | ARP2_CAEEL | No assigned EC number | 0.6075 | 0.9077 | 0.7974 | yes | no |
| P53487 | ARP2_ACACA | No assigned EC number | 0.6372 | 0.9135 | 0.8170 | N/A | no |
| A7MB62 | ARP2_BOVIN | No assigned EC number | 0.6360 | 0.9077 | 0.7994 | yes | no |
| Q9LSD6 | ARP2_ARATH | No assigned EC number | 0.8930 | 0.9164 | 0.8174 | yes | no |
| Q5M7U6 | ARP2_RAT | No assigned EC number | 0.6360 | 0.9077 | 0.7994 | yes | no |
| Q5R4K0 | ARP2_PONAB | No assigned EC number | 0.6329 | 0.9077 | 0.7994 | yes | no |
| A2YUL5 | ARP2_ORYSI | No assigned EC number | 0.8654 | 0.9423 | 0.8406 | N/A | no |
| Q5BL41 | ARP2_XENTR | No assigned EC number | 0.6392 | 0.9077 | 0.7994 | yes | no |
| P45888 | ARP2_DROME | No assigned EC number | 0.6329 | 0.9077 | 0.7994 | yes | no |
| P32381 | ARP2_YEAST | No assigned EC number | 0.5968 | 0.9164 | 0.8132 | yes | no |
| O96621 | ARP2_DICDI | No assigned EC number | 0.6332 | 0.9164 | 0.8112 | yes | no |
| Q56A35 | ARP2B_DANRE | No assigned EC number | 0.6297 | 0.9077 | 0.7994 | yes | no |
| Q9UUJ1 | ARP2_SCHPO | No assigned EC number | 0.5769 | 0.8991 | 0.8 | yes | no |
| Q7SXW6 | ARP2A_DANRE | No assigned EC number | 0.6329 | 0.9077 | 0.7994 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 347 | |||
| smart00268 | 373 | smart00268, ACTIN, Actin | 1e-155 | |
| pfam00022 | 367 | pfam00022, Actin, Actin | 1e-133 | |
| PTZ00281 | 376 | PTZ00281, PTZ00281, actin; Provisional | 1e-113 | |
| PTZ00004 | 378 | PTZ00004, PTZ00004, actin-2; Provisional | 1e-109 | |
| PTZ00466 | 380 | PTZ00466, PTZ00466, actin-like protein; Provisiona | 1e-103 | |
| COG5277 | 444 | COG5277, COG5277, Actin and related proteins [Cyto | 2e-87 | |
| PTZ00452 | 375 | PTZ00452, PTZ00452, actin; Provisional | 3e-83 | |
| PTZ00280 | 414 | PTZ00280, PTZ00280, Actin-related protein 3; Provi | 3e-82 | |
| cd00012 | 185 | cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide- | 2e-14 |
| >gnl|CDD|214592 smart00268, ACTIN, Actin | Back alignment and domain information |
|---|
Score = 441 bits (1136), Expect = e-155
Identities = 174/318 (54%), Positives = 228/318 (71%), Gaps = 6/318 (1%)
Query: 4 RNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLR 63
+V DNG+G +K GFAGE+FP VFP +VGRP M + KD VG A + R
Sbjct: 1 VPAIVIDNGSGTIKAGFAGEDFPQVVFPSIVGRPKDGKG---MVGDAKDIFVGDEAQEKR 57
Query: 64 HQLDVSYPVNNGIVQNWEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVET 123
L++ YP+ NGIV+NW+DM ++WD+ FF+EL+++P E +LLT+PP+NP NREK++E
Sbjct: 58 GGLELKYPIENGIVENWDDMEKIWDYTFFNELRVEPEEHPVLLTEPPMNPKSNREKILEI 117
Query: 124 MFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAG 183
MFE +NF ++I IQAVL+LYA G TGLVIDSGDGVTHVVPVVDGY PH KR+++AG
Sbjct: 118 MFETFNFPALYIAIQAVLSLYASGRTTGLVIDSGDGVTHVVPVVDGYVLPHAIKRIDIAG 177
Query: 184 RHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLE---TTILVKN 240
R IT YL +LLS RGY N +A+FE VR+IKEKLCY++ D+++E +L E ++ L K
Sbjct: 178 RDITDYLKELLSERGYQFNSSAEFEIVREIKEKLCYVAEDFEKEMKLARESSESSKLEKT 237
Query: 241 YTLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVL 300
Y LPDG IKVG ERF+ PE LF+PELI +E G+ ++V+ IQ+ DID R LY++IVL
Sbjct: 238 YELPDGNTIKVGNERFRIPEILFSPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVL 297
Query: 301 SGGSTMYPGLPSRYYVEL 318
SGGST+ PG R EL
Sbjct: 298 SGGSTLIPGFGERLEKEL 315
|
ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily. Length = 373 |
| >gnl|CDD|200935 pfam00022, Actin, Actin | Back alignment and domain information |
|---|
| >gnl|CDD|173506 PTZ00281, PTZ00281, actin; Provisional | Back alignment and domain information |
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| >gnl|CDD|240225 PTZ00004, PTZ00004, actin-2; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|240426 PTZ00466, PTZ00466, actin-like protein; Provisional | Back alignment and domain information |
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| >gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton] | Back alignment and domain information |
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| >gnl|CDD|185631 PTZ00452, PTZ00452, actin; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|240343 PTZ00280, PTZ00280, Actin-related protein 3; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 347 | |||
| PTZ00452 | 375 | actin; Provisional | 100.0 | |
| PTZ00466 | 380 | actin-like protein; Provisional | 100.0 | |
| PTZ00281 | 376 | actin; Provisional | 100.0 | |
| KOG0677 | 389 | consensus Actin-related protein Arp2/3 complex, su | 100.0 | |
| KOG0676 | 372 | consensus Actin and related proteins [Cytoskeleton | 100.0 | |
| PTZ00004 | 378 | actin-2; Provisional | 100.0 | |
| KOG0679 | 426 | consensus Actin-related protein - Arp4p/Act3p [Cyt | 100.0 | |
| PTZ00280 | 414 | Actin-related protein 3; Provisional | 100.0 | |
| PF00022 | 393 | Actin: Actin; InterPro: IPR004000 Actin [, ] is a | 100.0 | |
| smart00268 | 373 | ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki | 100.0 | |
| cd00012 | 371 | ACTIN Actin; An ubiquitous protein involved in the | 100.0 | |
| COG5277 | 444 | Actin and related proteins [Cytoskeleton] | 100.0 | |
| KOG0680 | 400 | consensus Actin-related protein - Arp6p [Cytoskele | 100.0 | |
| KOG0681 | 645 | consensus Actin-related protein - Arp5p [Cytoskele | 100.0 | |
| KOG0678 | 415 | consensus Actin-related protein Arp2/3 complex, su | 100.0 | |
| PRK13930 | 335 | rod shape-determining protein MreB; Provisional | 100.0 | |
| PRK13927 | 334 | rod shape-determining protein MreB; Provisional | 100.0 | |
| PRK13929 | 335 | rod-share determining protein MreBH; Provisional | 100.0 | |
| TIGR00904 | 333 | mreB cell shape determining protein, MreB/Mrl fami | 100.0 | |
| KOG0797 | 618 | consensus Actin-related protein [Cytoskeleton] | 100.0 | |
| PF06723 | 326 | MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba | 99.97 | |
| PRK13928 | 336 | rod shape-determining protein Mbl; Provisional | 99.97 | |
| COG1077 | 342 | MreB Actin-like ATPase involved in cell morphogene | 99.93 | |
| TIGR02529 | 239 | EutJ ethanolamine utilization protein EutJ family | 99.8 | |
| PRK15080 | 267 | ethanolamine utilization protein EutJ; Provisional | 99.73 | |
| CHL00094 | 621 | dnaK heat shock protein 70 | 99.66 | |
| PLN03184 | 673 | chloroplast Hsp70; Provisional | 99.65 | |
| PRK01433 | 595 | hscA chaperone protein HscA; Provisional | 99.64 | |
| TIGR01991 | 599 | HscA Fe-S protein assembly chaperone HscA. The Hea | 99.64 | |
| PRK13411 | 653 | molecular chaperone DnaK; Provisional | 99.63 | |
| PTZ00009 | 653 | heat shock 70 kDa protein; Provisional | 99.63 | |
| PTZ00186 | 657 | heat shock 70 kDa precursor protein; Provisional | 99.63 | |
| PTZ00400 | 663 | DnaK-type molecular chaperone; Provisional | 99.63 | |
| PRK00290 | 627 | dnaK molecular chaperone DnaK; Provisional | 99.62 | |
| PRK05183 | 616 | hscA chaperone protein HscA; Provisional | 99.6 | |
| TIGR02350 | 595 | prok_dnaK chaperone protein DnaK. Members of this | 99.6 | |
| PRK13410 | 668 | molecular chaperone DnaK; Provisional | 99.59 | |
| PRK11678 | 450 | putative chaperone; Provisional | 99.5 | |
| TIGR01174 | 371 | ftsA cell division protein FtsA. This bacterial ce | 99.43 | |
| PRK09472 | 420 | ftsA cell division protein FtsA; Reviewed | 99.42 | |
| PF00012 | 602 | HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho | 99.37 | |
| COG0443 | 579 | DnaK Molecular chaperone [Posttranslational modifi | 99.37 | |
| COG0849 | 418 | ftsA Cell division ATPase FtsA [Cell division and | 99.28 | |
| TIGR01175 | 348 | pilM type IV pilus assembly protein PilM. This pro | 99.07 | |
| PRK13917 | 344 | plasmid segregation protein ParM; Provisional | 99.02 | |
| COG4820 | 277 | EutJ Ethanolamine utilization protein, possible ch | 98.95 | |
| TIGR03739 | 320 | PRTRC_D PRTRC system protein D. A novel genetic sy | 98.93 | |
| PF11104 | 340 | PilM_2: Type IV pilus assembly protein PilM;; PDB: | 98.91 | |
| KOG0104 | 902 | consensus Molecular chaperones GRP170/SIL1, HSP70 | 98.86 | |
| KOG0101 | 620 | consensus Molecular chaperones HSP70/HSC70, HSP70 | 98.82 | |
| KOG0100 | 663 | consensus Molecular chaperones GRP78/BiP/KAR2, HSP | 98.79 | |
| COG4972 | 354 | PilM Tfp pilus assembly protein, ATPase PilM [Cell | 98.42 | |
| PF06406 | 318 | StbA: StbA protein; InterPro: IPR009440 This entry | 98.29 | |
| KOG0103 | 727 | consensus Molecular chaperones HSP105/HSP110/SSE1, | 98.28 | |
| KOG0102 | 640 | consensus Molecular chaperones mortalin/PBP74/GRP7 | 98.13 | |
| PRK10719 | 475 | eutA reactivating factor for ethanolamine ammonia | 97.75 | |
| TIGR00241 | 248 | CoA_E_activ CoA-substrate-specific enzyme activase | 97.52 | |
| PF06277 | 473 | EutA: Ethanolamine utilisation protein EutA; Inter | 97.34 | |
| TIGR03286 | 404 | methan_mark_15 putative methanogenesis marker prot | 96.43 | |
| TIGR03123 | 318 | one_C_unchar_1 probable H4MPT-linked C1 transfer p | 95.95 | |
| PF08841 | 332 | DDR: Diol dehydratase reactivase ATPase-like domai | 95.92 | |
| TIGR03192 | 293 | benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s | 95.65 | |
| TIGR03706 | 300 | exo_poly_only exopolyphosphatase. It appears that | 95.52 | |
| COG1548 | 330 | Predicted transcriptional regulator/sugar kinase [ | 95.51 | |
| TIGR02261 | 262 | benz_CoA_red_D benzoyl-CoA reductase, bcr type, su | 95.36 | |
| PRK11031 | 496 | guanosine pentaphosphate phosphohydrolase; Provisi | 94.98 | |
| PRK10854 | 513 | exopolyphosphatase; Provisional | 93.83 | |
| PRK03011 | 358 | butyrate kinase; Provisional | 93.59 | |
| COG4819 | 473 | EutA Ethanolamine utilization protein, possible ch | 93.33 | |
| PF01869 | 271 | BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; In | 92.65 | |
| COG0248 | 492 | GppA Exopolyphosphatase [Nucleotide transport and | 92.09 | |
| PF14450 | 120 | FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B | 91.59 | |
| PF01968 | 290 | Hydantoinase_A: Hydantoinase/oxoprolinase; InterPr | 91.31 | |
| COG1521 | 251 | Pantothenate kinase type III (Bvg accessory factor | 90.39 | |
| PRK13321 | 256 | pantothenate kinase; Reviewed | 89.23 | |
| PF02541 | 285 | Ppx-GppA: Ppx/GppA phosphatase family; InterPro: I | 89.05 | |
| TIGR02707 | 351 | butyr_kinase butyrate kinase. This model represent | 89.03 | |
| PF07318 | 343 | DUF1464: Protein of unknown function (DUF1464); In | 88.91 | |
| PRK13324 | 258 | pantothenate kinase; Reviewed | 88.86 | |
| TIGR00671 | 243 | baf pantothenate kinase, type III. This model desc | 87.14 | |
| PF03309 | 206 | Pan_kinase: Type III pantothenate kinase; InterPro | 86.59 | |
| PRK13318 | 258 | pantothenate kinase; Reviewed | 85.92 | |
| COG1924 | 396 | Activator of 2-hydroxyglutaryl-CoA dehydratase (HS | 82.82 | |
| PRK13326 | 262 | pantothenate kinase; Reviewed | 82.54 |
| >PTZ00452 actin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-78 Score=563.92 Aligned_cols=342 Identities=36% Similarity=0.657 Sum_probs=311.1
Q ss_pred CCCeEEEeCCCceEEEeecCCCCCCcccccceeecCcchhhhhhhccCCceEeccccccccCCceeeccccCCeeecHHH
Q 019039 3 NRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWED 82 (347)
Q Consensus 3 ~~~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~~~ 82 (347)
..++||||+||.++|+|||||+.|++++||.+|+++...... ....+++++|+++...++.+.+++|+++|.|.|||.
T Consensus 4 ~~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~--~~~~~~~~iG~~~~~~~~~~~l~~Pi~~G~I~dwd~ 81 (375)
T PTZ00452 4 QYPAVVIDNGSGYCKIGIAGDDAPTSCFPAIVGRSKQNDGIF--STFNKEYYVGEEAQAKRGVLAIKEPIQNGIINSWDD 81 (375)
T ss_pred CCCEEEEECCCCeEEEeeCCCCCcCEEecceeEEECCccccc--cccccceEEChhhhccccCcEEcccCcCCEEcCHHH
Confidence 356999999999999999999999999999999887542111 112347889999888788899999999999999999
Q ss_pred HHHHHHHHcccccCCCCCCCeEEEEcCCCCCHHHHHHHHhhcccccCCCeEeeehhhhHhhhhCCCceEEEEecCCCceE
Q 019039 83 MGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTH 162 (347)
Q Consensus 83 l~~~~~~~~~~~l~~~~~~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~ 162 (347)
+|.+|+|+|.+.|+++++++|++++|++++++..|++++|++||.|++|++++.++++|++|++|++||||||+|++.|+
T Consensus 82 ~e~iw~~~f~~~l~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~~tglVVDiG~~~t~ 161 (375)
T PTZ00452 82 IEIIWHHAFYNELCMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGKTIGLVVDSGEGVTH 161 (375)
T ss_pred HHHHHHHHHHhhcCCCcccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCCceeeeecCCCCcce
Confidence 99999999989999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCeecccceeEecccHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHhccccccchHHHHhhcccCccceeeee
Q 019039 163 VVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTILVKNYT 242 (347)
Q Consensus 163 v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 242 (347)
|+||+||+++++++.++++||+++|++|.++|.++++.+....+.+.++++||++||++.|+.++.............|+
T Consensus 162 v~PV~dG~~l~~~~~r~~~gG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~ 241 (375)
T PTZ00452 162 CVPVFEGHQIPQAITKINLAGRLCTDYLTQILQELGYSLTEPHQRIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYK 241 (375)
T ss_pred EEEEECCEEeccceEEeeccchHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEE
Confidence 99999999999999999999999999999999998877766667889999999999999998777553333344567899
Q ss_pred CCCCceEEeCCccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcceEEecCCCCCCChHHHHHHHHhhcC
Q 019039 243 LPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRYYVELFFAS 322 (347)
Q Consensus 243 lpdg~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~ 322 (347)
||||+.+.++.|||.+||+||+|++.+.+..||+++|.++|.+||+|+|+.|++||||+||+|++|||.+||++||+++.
T Consensus 242 LPDg~~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~ 321 (375)
T PTZ00452 242 LPDGNILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLV 321 (375)
T ss_pred CCCCCEEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCeeeeecCCccccccccccccC
Q 019039 323 HD-IPLCFLRNLGLHVYSLFLSVFVL 347 (347)
Q Consensus 323 ~~-~~~~~~~~~~~~~~s~w~G~~~~ 347 (347)
|. .++++.. ...+.|++|+|||++
T Consensus 322 p~~~~v~v~~-~~~r~~~aW~GgSil 346 (375)
T PTZ00452 322 PSQLKIQVAA-PPDRRFSAWIGGSIQ 346 (375)
T ss_pred CCCceeEEec-CCCcceeEEECchhh
Confidence 84 5666543 468999999999986
|
|
| >PTZ00466 actin-like protein; Provisional | Back alignment and domain information |
|---|
| >PTZ00281 actin; Provisional | Back alignment and domain information |
|---|
| >KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0676 consensus Actin and related proteins [Cytoskeleton] | Back alignment and domain information |
|---|
| >PTZ00004 actin-2; Provisional | Back alignment and domain information |
|---|
| >KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton] | Back alignment and domain information |
|---|
| >PTZ00280 Actin-related protein 3; Provisional | Back alignment and domain information |
|---|
| >PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton | Back alignment and domain information |
|---|
| >smart00268 ACTIN Actin | Back alignment and domain information |
|---|
| >cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton | Back alignment and domain information |
|---|
| >COG5277 Actin and related proteins [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton] | Back alignment and domain information |
|---|
| >PRK13930 rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
| >PRK13927 rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
| >PRK13929 rod-share determining protein MreBH; Provisional | Back alignment and domain information |
|---|
| >TIGR00904 mreB cell shape determining protein, MreB/Mrl family | Back alignment and domain information |
|---|
| >KOG0797 consensus Actin-related protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes | Back alignment and domain information |
|---|
| >PRK13928 rod shape-determining protein Mbl; Provisional | Back alignment and domain information |
|---|
| >COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >TIGR02529 EutJ ethanolamine utilization protein EutJ family protein | Back alignment and domain information |
|---|
| >PRK15080 ethanolamine utilization protein EutJ; Provisional | Back alignment and domain information |
|---|
| >CHL00094 dnaK heat shock protein 70 | Back alignment and domain information |
|---|
| >PLN03184 chloroplast Hsp70; Provisional | Back alignment and domain information |
|---|
| >PRK01433 hscA chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
| >TIGR01991 HscA Fe-S protein assembly chaperone HscA | Back alignment and domain information |
|---|
| >PRK13411 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
| >PTZ00009 heat shock 70 kDa protein; Provisional | Back alignment and domain information |
|---|
| >PTZ00186 heat shock 70 kDa precursor protein; Provisional | Back alignment and domain information |
|---|
| >PTZ00400 DnaK-type molecular chaperone; Provisional | Back alignment and domain information |
|---|
| >PRK00290 dnaK molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
| >PRK05183 hscA chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
| >TIGR02350 prok_dnaK chaperone protein DnaK | Back alignment and domain information |
|---|
| >PRK13410 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
| >PRK11678 putative chaperone; Provisional | Back alignment and domain information |
|---|
| >TIGR01174 ftsA cell division protein FtsA | Back alignment and domain information |
|---|
| >PRK09472 ftsA cell division protein FtsA; Reviewed | Back alignment and domain information |
|---|
| >PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins | Back alignment and domain information |
|---|
| >COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >TIGR01175 pilM type IV pilus assembly protein PilM | Back alignment and domain information |
|---|
| >PRK13917 plasmid segregation protein ParM; Provisional | Back alignment and domain information |
|---|
| >COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >TIGR03739 PRTRC_D PRTRC system protein D | Back alignment and domain information |
|---|
| >PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A | Back alignment and domain information |
|---|
| >KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA [] | Back alignment and domain information |
|---|
| >KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional | Back alignment and domain information |
|---|
| >TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative | Back alignment and domain information |
|---|
| >PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon | Back alignment and domain information |
|---|
| >TIGR03286 methan_mark_15 putative methanogenesis marker protein 15 | Back alignment and domain information |
|---|
| >TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein | Back alignment and domain information |
|---|
| >PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ] | Back alignment and domain information |
|---|
| >TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit | Back alignment and domain information |
|---|
| >TIGR03706 exo_poly_only exopolyphosphatase | Back alignment and domain information |
|---|
| >COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D | Back alignment and domain information |
|---|
| >PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional | Back alignment and domain information |
|---|
| >PRK10854 exopolyphosphatase; Provisional | Back alignment and domain information |
|---|
| >PRK03011 butyrate kinase; Provisional | Back alignment and domain information |
|---|
| >COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis | Back alignment and domain information |
|---|
| >COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T | Back alignment and domain information |
|---|
| >PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3 | Back alignment and domain information |
|---|
| >COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription] | Back alignment and domain information |
|---|
| >PRK13321 pantothenate kinase; Reviewed | Back alignment and domain information |
|---|
| >PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3 | Back alignment and domain information |
|---|
| >TIGR02707 butyr_kinase butyrate kinase | Back alignment and domain information |
|---|
| >PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length | Back alignment and domain information |
|---|
| >PRK13324 pantothenate kinase; Reviewed | Back alignment and domain information |
|---|
| >TIGR00671 baf pantothenate kinase, type III | Back alignment and domain information |
|---|
| >PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway | Back alignment and domain information |
|---|
| >PRK13318 pantothenate kinase; Reviewed | Back alignment and domain information |
|---|
| >COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism] | Back alignment and domain information |
|---|
| >PRK13326 pantothenate kinase; Reviewed | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 347 | ||||
| 1k8k_B | 394 | Crystal Structure Of Arp23 COMPLEX Length = 394 | 1e-122 | ||
| 2p9k_B | 394 | Crystal Structure Of Bovine Arp23 COMPLEX CO-Crysta | 1e-122 | ||
| 4efh_A | 375 | Acanthamoeba Actin Complex With Spir Domain D Lengt | 2e-90 | ||
| 2oan_A | 375 | Structure Of Oxidized Beta-Actin Length = 375 | 4e-90 | ||
| 3b63_C | 365 | Actin Filament Model In The Extended Form Of Acroms | 4e-90 | ||
| 1yag_A | 375 | Structure Of The Yeast Actin-human Gelsolin Segment | 5e-90 | ||
| 3m6g_A | 371 | Crystal Structure Of Actin In Complex With Lobophor | 7e-90 | ||
| 1kxp_A | 375 | Crystal Structure Of Human Vitamin D-binding Protei | 7e-90 | ||
| 2w49_D | 372 | Isometrically Contracting Insect Asynchronous Fligh | 7e-90 | ||
| 3byh_A | 374 | Model Of Actin-Fimbrin Abd2 Complex Length = 374 | 8e-90 | ||
| 1ijj_A | 377 | The X-Ray Crystal Structure Of The Complex Between | 9e-90 | ||
| 3u4l_A | 375 | Cryocooled Bovine Profilin:actin Crystal Structure | 9e-90 | ||
| 4b1v_A | 376 | Structure Of The Phactr1 Rpel-N Domain Bound To G-A | 1e-89 | ||
| 1atn_A | 373 | Atomic Structure Of The Actin:dnase I Complex Lengt | 1e-89 | ||
| 1eqy_A | 377 | Complex Between Rabbit Muscle Alpha-Actin: Human Ge | 1e-89 | ||
| 2btf_A | 375 | The Structure Of Crystalline Profilin-Beta-Actin Le | 1e-89 | ||
| 3g37_O | 376 | Cryo-Em Structure Of Actin Filament In The Presence | 1e-89 | ||
| 1qz5_A | 375 | Structure Of Rabbit Actin In Complex With Kabiramid | 1e-89 | ||
| 3b63_L | 365 | Actin Filament Model In The Extended Form Of Acroms | 2e-89 | ||
| 1d4x_A | 375 | Crystal Structure Of Caenorhabditis Elegans Mg-Atp | 2e-89 | ||
| 3b63_E | 365 | Actin Filament Model In The Extended Form Of Acroms | 2e-89 | ||
| 1t44_A | 370 | Structural Basis Of Actin Sequestration By Thymosin | 3e-89 | ||
| 3b63_A | 365 | Actin Filament Model In The Extended Form Of Acroms | 3e-89 | ||
| 1yvn_A | 375 | The Yeast Actin Val 159 Asn Mutant Complex With Hum | 3e-89 | ||
| 2gwj_A | 371 | Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form | 3e-89 | ||
| 3w3d_A | 374 | Crystal Structure Of Smooth Muscle G Actin Dnase I | 5e-89 | ||
| 1lcu_A | 371 | Polylysine Induces An Antiparallel Actin Dimer That | 2e-88 | ||
| 3b63_B | 364 | Actin Filament Model In The Extended Form Of Acroms | 6e-88 | ||
| 3b63_F | 357 | Actin Filament Model In The Extended Form Of Acroms | 6e-88 | ||
| 3ci5_A | 375 | Complex Of Phosphorylated Dictyostelium Discoideum | 7e-88 | ||
| 3b63_D | 357 | Actin Filament Model In The Extended Form Of Acroms | 7e-88 | ||
| 3chw_A | 375 | Complex Of Dictyostelium Discoideum Actin With Prof | 9e-88 | ||
| 1nlv_A | 375 | Crystal Structure Of Dictyostelium Discoideum Actin | 2e-87 | ||
| 2hf3_A | 374 | Crystal Structure Of Monomeric Actin In The Adp Bou | 3e-87 | ||
| 1dej_A | 375 | Crystal Structure Of A DictyosteliumTETRAHYMENA CHI | 3e-87 | ||
| 3eks_A | 375 | Crystal Structure Of Monomeric Actin Bound To Cytoc | 3e-87 | ||
| 1c0f_A | 368 | Crystal Structure Of Dictyostelium Caatp-Actin In C | 9e-87 | ||
| 1c0g_A | 375 | Crystal Structure Of 1:1 Complex Between Gelsolin S | 9e-87 | ||
| 3a5l_C | 375 | Crystal Structure Of A Dictyostelium P109a Mg2+-Act | 5e-86 | ||
| 3mn5_A | 359 | Structures Of Actin-Bound Wh2 Domains Of Spire And | 5e-86 | ||
| 3a5m_C | 375 | Crystal Structure Of A Dictyostelium P109i Mg2+-Act | 1e-85 | ||
| 3dwl_A | 427 | Crystal Structure Of Fission Yeast Arp2/3 Complex L | 4e-46 | ||
| 1k8k_A | 418 | Crystal Structure Of Arp23 COMPLEX Length = 418 | 3e-43 | ||
| 3qb0_A | 498 | Crystal Structure Of Actin-Related Protein Arp4 Fro | 1e-16 | ||
| 3qb0_A | 498 | Crystal Structure Of Actin-Related Protein Arp4 Fro | 6e-05 | ||
| 4fo0_A | 593 | Human Actin-Related Protein Arp8 In Its Atp-Bound S | 2e-11 | ||
| 4i6m_A | 477 | Structure Of Arp7-arp9-snf2(hsa)-rtt102 Subcomplex | 4e-09 | ||
| 4i6m_B | 439 | Structure Of Arp7-arp9-snf2(hsa)-rtt102 Subcomplex | 2e-05 |
| >pdb|1K8K|B Chain B, Crystal Structure Of Arp23 COMPLEX Length = 394 | Back alignment and structure |
|
| >pdb|2P9K|B Chain B, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized With Atp And Crosslinked With Glutaraldehyde Length = 394 | Back alignment and structure |
| >pdb|4EFH|A Chain A, Acanthamoeba Actin Complex With Spir Domain D Length = 375 | Back alignment and structure |
| >pdb|2OAN|A Chain A, Structure Of Oxidized Beta-Actin Length = 375 | Back alignment and structure |
| >pdb|3B63|C Chain C, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 | Back alignment and structure |
| >pdb|1YAG|A Chain A, Structure Of The Yeast Actin-human Gelsolin Segment 1 Complex Length = 375 | Back alignment and structure |
| >pdb|3M6G|A Chain A, Crystal Structure Of Actin In Complex With Lobophorolide Length = 371 | Back alignment and structure |
| >pdb|1KXP|A Chain A, Crystal Structure Of Human Vitamin D-binding Protein In Complex With Skeletal Actin Length = 375 | Back alignment and structure |
| >pdb|2W49|D Chain D, Isometrically Contracting Insect Asynchronous Flight Muscle Length = 372 | Back alignment and structure |
| >pdb|3BYH|A Chain A, Model Of Actin-Fimbrin Abd2 Complex Length = 374 | Back alignment and structure |
| >pdb|1IJJ|A Chain A, The X-Ray Crystal Structure Of The Complex Between Rabbit Skeletal Muscle Actin And Latrunculin A At 2.85 A Resolution Length = 377 | Back alignment and structure |
| >pdb|3U4L|A Chain A, Cryocooled Bovine Profilin:actin Crystal Structure To 2.4 A Length = 375 | Back alignment and structure |
| >pdb|4B1V|A Chain A, Structure Of The Phactr1 Rpel-N Domain Bound To G-Actin Length = 376 | Back alignment and structure |
| >pdb|1ATN|A Chain A, Atomic Structure Of The Actin:dnase I Complex Length = 373 | Back alignment and structure |
| >pdb|1EQY|A Chain A, Complex Between Rabbit Muscle Alpha-Actin: Human Gelsolin Domain 1 Length = 377 | Back alignment and structure |
| >pdb|2BTF|A Chain A, The Structure Of Crystalline Profilin-Beta-Actin Length = 375 | Back alignment and structure |
| >pdb|3G37|O Chain O, Cryo-Em Structure Of Actin Filament In The Presence Of Phosphate Length = 376 | Back alignment and structure |
| >pdb|1QZ5|A Chain A, Structure Of Rabbit Actin In Complex With Kabiramide C Length = 375 | Back alignment and structure |
| >pdb|3B63|L Chain L, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 | Back alignment and structure |
| >pdb|1D4X|A Chain A, Crystal Structure Of Caenorhabditis Elegans Mg-Atp Actin Complexed With Human Gelsolin Segment 1 At 1.75 A Resolution Length = 375 | Back alignment and structure |
| >pdb|3B63|E Chain E, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 | Back alignment and structure |
| >pdb|1T44|A Chain A, Structural Basis Of Actin Sequestration By Thymosin-B4: Implications For Arp23 ACTIVATION Length = 370 | Back alignment and structure |
| >pdb|3B63|A Chain A, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 | Back alignment and structure |
| >pdb|1YVN|A Chain A, The Yeast Actin Val 159 Asn Mutant Complex With Human Gelsolin Segment 1 Length = 375 | Back alignment and structure |
| >pdb|2GWJ|A Chain A, Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form Length = 371 | Back alignment and structure |
| >pdb|3W3D|A Chain A, Crystal Structure Of Smooth Muscle G Actin Dnase I Complex Length = 374 | Back alignment and structure |
| >pdb|1LCU|A Chain A, Polylysine Induces An Antiparallel Actin Dimer That Nucleates Filament Assembly: Crystal Structure At 3.5 A Resolution Length = 371 | Back alignment and structure |
| >pdb|3B63|B Chain B, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 364 | Back alignment and structure |
| >pdb|3B63|F Chain F, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 357 | Back alignment and structure |
| >pdb|3CI5|A Chain A, Complex Of Phosphorylated Dictyostelium Discoideum Actin With Gelsolin Length = 375 | Back alignment and structure |
| >pdb|3B63|D Chain D, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 357 | Back alignment and structure |
| >pdb|3CHW|A Chain A, Complex Of Dictyostelium Discoideum Actin With Profilin And The Last Poly-Pro Of Human Vasp Length = 375 | Back alignment and structure |
| >pdb|1NLV|A Chain A, Crystal Structure Of Dictyostelium Discoideum Actin Complexed With Ca Atp And Human Gelsolin Segment 1 Length = 375 | Back alignment and structure |
| >pdb|2HF3|A Chain A, Crystal Structure Of Monomeric Actin In The Adp Bound State Length = 374 | Back alignment and structure |
| >pdb|1DEJ|A Chain A, Crystal Structure Of A DictyosteliumTETRAHYMENA CHIMERA Actin (Mutant 646: Q228kT229AA230YA231KS232EE360H) IN Complex With Human Gelsolin Segment 1 Length = 375 | Back alignment and structure |
| >pdb|3EKS|A Chain A, Crystal Structure Of Monomeric Actin Bound To Cytochalasin D Length = 375 | Back alignment and structure |
| >pdb|1C0F|A Chain A, Crystal Structure Of Dictyostelium Caatp-Actin In Complex With Gelsolin Segment 1 Length = 368 | Back alignment and structure |
| >pdb|1C0G|A Chain A, Crystal Structure Of 1:1 Complex Between Gelsolin Segment 1 And A DictyosteliumTETRAHYMENA CHIMERA ACTIN (MUTANT 228: Q228kT229AA230YE360H) Length = 375 | Back alignment and structure |
| >pdb|3A5L|C Chain C, Crystal Structure Of A Dictyostelium P109a Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375 | Back alignment and structure |
| >pdb|3MN5|A Chain A, Structures Of Actin-Bound Wh2 Domains Of Spire And The Implication For Filament Nucleation Length = 359 | Back alignment and structure |
| >pdb|3A5M|C Chain C, Crystal Structure Of A Dictyostelium P109i Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375 | Back alignment and structure |
| >pdb|3DWL|A Chain A, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking The Arp2 Subunit Length = 427 | Back alignment and structure |
| >pdb|1K8K|A Chain A, Crystal Structure Of Arp23 COMPLEX Length = 418 | Back alignment and structure |
| >pdb|3QB0|A Chain A, Crystal Structure Of Actin-Related Protein Arp4 From S. Cerevisiae Complexed With Atp Length = 498 | Back alignment and structure |
| >pdb|3QB0|A Chain A, Crystal Structure Of Actin-Related Protein Arp4 From S. Cerevisiae Complexed With Atp Length = 498 | Back alignment and structure |
| >pdb|4FO0|A Chain A, Human Actin-Related Protein Arp8 In Its Atp-Bound State Length = 593 | Back alignment and structure |
| >pdb|4I6M|A Chain A, Structure Of Arp7-arp9-snf2(hsa)-rtt102 Subcomplex Of Swi/snf Chromatin Remodeler Length = 477 | Back alignment and structure |
| >pdb|4I6M|B Chain B, Structure Of Arp7-arp9-snf2(hsa)-rtt102 Subcomplex Of Swi/snf Chromatin Remodeler Length = 439 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Length = 394 | Back alignment and structure |
|---|
Score = 460 bits (1186), Expect = e-163
Identities = 203/321 (63%), Positives = 255/321 (79%), Gaps = 3/321 (0%)
Query: 1 MDN--RNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAA 58
MD+ R VVVCDNGTG+VKCG+AG NFP +FP +VGRP++R + E+KD +VG
Sbjct: 1 MDSQGRKVVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPIIRSTTKVGNIEIKDLMVGDE 60
Query: 59 ALDLRHQLDVSYPVNNGIVQNWEDMGQVWDHAFFSE-LKIDPPECKILLTDPPLNPAKNR 117
A +LR L+V+YP+ NGIV+NW+DM +WD+ F E L ID CKILLT+PP+NP KNR
Sbjct: 61 ASELRSMLEVNYPMENGIVRNWDDMKHLWDYTFGPEKLNIDTRNCKILLTEPPMNPTKNR 120
Query: 118 EKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTK 177
EK+VE MFE Y F+GV++ IQAVLTLYAQGLLTG+V+DSGDGVTH+ PV +G+S PHLT+
Sbjct: 121 EKIVEVMFETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHICPVYEGFSLPHLTR 180
Query: 178 RMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTIL 237
R+++AGR IT YL+ LL RGY+ N +ADFETVR IKEKLCY+ Y+ ++E +L LETT+L
Sbjct: 181 RLDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMIKEKLCYVGYNIEQEQKLALETTVL 240
Query: 238 VKNYTLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQH 297
V++YTLPDGR+IKVG ERF+APEALF P LI+VEG G+A+++F IQ DID R Y+H
Sbjct: 241 VESYTLPDGRIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKH 300
Query: 298 IVLSGGSTMYPGLPSRYYVEL 318
IVLSGGSTMYPGLPSR EL
Sbjct: 301 IVLSGGSTMYPGLPSRLEREL 321
|
| >2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Length = 375 | Back alignment and structure |
|---|
| >1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Length = 418 | Back alignment and structure |
|---|
| >3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 427 | Back alignment and structure |
|---|
| >3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Length = 498 | Back alignment and structure |
|---|
| >3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Length = 498 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} Length = 377 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 347 | |||
| 3qb0_A | 498 | Actin-related protein 4; actin fold, ATP binding, | 100.0 | |
| 3dwl_A | 427 | Actin-related protein 3; propellor, actin-binding, | 100.0 | |
| 1k8k_B | 394 | ARP2, actin-like protein 2; beta-propeller, struct | 100.0 | |
| 2fxu_A | 375 | Alpha-actin-1, actin, alpha skeletal muscle; actin | 100.0 | |
| 4fo0_A | 593 | Actin-related protein 8; chromatin remodeling, nuc | 100.0 | |
| 1k8k_A | 418 | ARP3, actin-like protein 3, actin-2; beta-propelle | 100.0 | |
| 4am6_A | 655 | Actin-like protein ARP8; nuclear protein, chromati | 100.0 | |
| 1jce_A | 344 | ROD shape-determining protein MREB; MBL, actin, HS | 100.0 | |
| 2v7y_A | 509 | Chaperone protein DNAK; HSP70, heat shock protein, | 99.9 | |
| 3h1q_A | 272 | Ethanolamine utilization protein EUTJ; ethanolamin | 99.88 | |
| 1dkg_D | 383 | Molecular chaperone DNAK; HSP70, GRPE, nucleotide | 99.88 | |
| 3qfu_A | 394 | 78 kDa glucose-regulated protein homolog; HSP70, K | 99.85 | |
| 3i33_A | 404 | Heat shock-related 70 kDa protein 2; protein-ADP c | 99.8 | |
| 1yuw_A | 554 | Heat shock cognate 71 kDa protein; chaperone; 2.60 | 99.75 | |
| 2kho_A | 605 | Heat shock protein 70; molecular chaperone, HSP70, | 99.74 | |
| 2ych_A | 377 | Competence protein PILM; cell cycle, type IV pilus | 99.67 | |
| 3d2f_A | 675 | Heat shock protein homolog SSE1; nucleotide exchan | 99.67 | |
| 4gni_A | 409 | Putative heat shock protein; HSP70-type ATPase, AT | 99.64 | |
| 2fsj_A | 346 | Hypothetical protein TA0583; actin homologs, archa | 99.63 | |
| 4b9q_A | 605 | Chaperone protein DNAK; HET: ATP; 2.40A {Escherich | 99.6 | |
| 4a2a_A | 419 | Cell division protein FTSA, putative; cell cycle, | 99.52 | |
| 4apw_A | 329 | ALP12; actin-like protein; 19.70A {Clostridium tet | 99.24 | |
| 3js6_A | 355 | Uncharacterized PARM protein; partition, segregati | 99.22 | |
| 2zgy_A | 320 | Plasmid segregation protein PARM; plasmid partitio | 99.18 | |
| 2d0o_A | 610 | DIOL dehydratase-reactivating factor large subunit | 98.51 | |
| 1nbw_A | 607 | Glycerol dehydratase reactivase alpha subunit; mol | 98.46 | |
| 4ehu_A | 276 | Activator of 2-hydroxyisocaproyl-COA dehydratase; | 96.93 | |
| 1t6c_A | 315 | Exopolyphosphatase; alpha/beta protein, actin-like | 96.14 | |
| 3mdq_A | 315 | Exopolyphosphatase; structural genomics, joint cen | 95.35 | |
| 1u6z_A | 513 | Exopolyphosphatase; alpha/beta protein, askha (ace | 95.08 | |
| 3hi0_A | 508 | Putative exopolyphosphatase; 17739545, structural | 94.94 | |
| 1hux_A | 270 | Activator of (R)-2-hydroxyglutaryl-COA dehydratase | 94.29 | |
| 2gup_A | 292 | ROK family protein; sugar kinase, streptococcus pn | 94.07 | |
| 3vgl_A | 321 | Glucokinase; ROK family, transferase; HET: BGC ANP | 92.89 | |
| 3djc_A | 266 | Type III pantothenate kinase; structural genomics, | 92.86 | |
| 4db3_A | 327 | Glcnac kinase, N-acetyl-D-glucosamine kinase; stru | 92.86 | |
| 3cet_A | 334 | Conserved archaeal protein; Q6M145, MRR63, NESG, X | 91.85 | |
| 2h3g_X | 268 | Biosynthetic protein; pantothenate kinase, anthrax | 91.35 | |
| 3vov_A | 302 | Glucokinase, hexokinase; ROK, sugar kinase, transf | 90.62 | |
| 3bex_A | 249 | Type III pantothenate kinase; actin-like fold, ATP | 88.51 | |
| 1zc6_A | 305 | Probable N-acetylglucosamine kinase; NESG, Q7NU07_ | 88.41 | |
| 2ews_A | 287 | Pantothenate kinase; PANK, structural genomics, st | 87.17 | |
| 3cer_A | 343 | Possible exopolyphosphatase-like protein; NESG, BL | 86.62 | |
| 3r8e_A | 321 | Hypothetical sugar kinase; ribonuclease H-like mot | 85.81 | |
| 2ch5_A | 347 | NAGK protein; transferase, N-acetylglucosamine, gl | 83.25 | |
| 2e2o_A | 299 | Hexokinase; acetate and sugar kinases, HSP70, acti | 81.76 | |
| 2i7n_A | 360 | Pantothenate kinase 1; PANK, transferase; HET: ACO | 81.62 | |
| 1zbs_A | 291 | Hypothetical protein PG1100; alpha-beta protein., | 81.5 | |
| 2qm1_A | 326 | Glucokinase; alpha-beta structure, putative helix- | 81.27 |
| >3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-74 Score=549.23 Aligned_cols=336 Identities=27% Similarity=0.431 Sum_probs=299.0
Q ss_pred CCCCeEEEeCCCceEEEeecCCCCCCcccccceeecCcchhhhhhhccCCceEeccc-cccccCCceeeccccCCeeecH
Q 019039 2 DNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAA-ALDLRHQLDVSYPVNNGIVQNW 80 (347)
Q Consensus 2 ~~~~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~p~~~g~i~~~ 80 (347)
++.++||||+||.++||||+|++.|+.++||++++++... .+..++|++ +...++.+.+++|+++|.|.||
T Consensus 21 de~~~iVID~GS~~~kaG~ag~~~P~~v~PSvVg~~~~~~--------~~~~~vG~e~~~~~r~~l~l~~Pi~~GvI~dw 92 (498)
T 3qb0_A 21 DEVSAVVIDPGSYTTNIGYSGSDFPQSILPSVYGKYTADE--------GNKKIFSEQSIGIPRKDYELKPIIENGLVIDW 92 (498)
T ss_dssp CCBSCEEEECCSSEEEEEETTCSSCSEEEESEEEEESSCS--------SCCEECCTTGGGSCCTTEEEEESEETTEESCH
T ss_pred CCCCeEEEECCCcEEEEEECCCCCeeeecCceeEEeccCC--------CccEEEecHHHhcCcCceEEeccCcCCEEccH
Confidence 4668999999999999999999999999999999876431 347789986 5666788999999999999999
Q ss_pred HHHHHHHHHHcccccCCCCCCC-eEEEEcCCCCCHHHHHHHHhhcccccCCCeEeeehhhhHhhhhCCCceEEEEecCCC
Q 019039 81 EDMGQVWDHAFFSELKIDPPEC-KILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDG 159 (347)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~~-~v~l~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~ 159 (347)
|.+|.+|+|+|.+.|++++.++ ||+++||+++++..|++++|++||.|++|+++++.+++||+|++|+++|+|||+|++
T Consensus 93 d~~E~iw~~~f~~~L~v~p~~~~pvlltep~~n~~~~Re~~~eilFE~f~vpav~l~~~~vlalya~G~~tglVVDiG~g 172 (498)
T 3qb0_A 93 DTAQEQWQWALQNELYLNSNSGIPALLTEPVWNSTENRKKSLEVLLEGMQFEACYLAPTSTCVSFAAGRPNCLVVDIGHD 172 (498)
T ss_dssp HHHHHHHHHHHHHTSCCSCCTTCCEEEEECTTCCHHHHHHHHHHHHTTSCCSEEEEEEHHHHHHHHHTCSSEEEEEECSS
T ss_pred HHHHHHHHHHHHhhhCCCcccCCceEEEeCCCCcHHHHHHHHHHHHhhcCCCeEeecchHHHHHHHcCCCeEEEEEcCCC
Confidence 9999999999988899999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeecCeecccceeEecccHHHHHHHHHHHHhhcC------------------CCCCCC------C-hHHHHHHHH
Q 019039 160 VTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRG------------------YSMNRT------A-DFETVRQIK 214 (347)
Q Consensus 160 ~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~------------------~~~~~~------~-~~~~~~~iK 214 (347)
.|+|+||++|+++++++.++++||+++|++|.++|+.++ +.++.. . +.++++++|
T Consensus 173 ~T~vvPI~~G~~l~~ai~rl~vgG~~lt~~L~~lL~~~~i~P~~~i~~k~~~~~~~~~~~~~~~s~~~~~~~~~iv~~iK 252 (498)
T 3qb0_A 173 TCSVSPIVDGMTLSKSTRRNFIAGKFINHLIKKALEPKEIIPLFAIKQRKPEFIKKTFDYEVDKSLYDYANNRGFFQECK 252 (498)
T ss_dssp CEEEEEEETTEECGGGCEEESCSHHHHHHHHHHHTTTSCCCCSTTEEECSSSCEECCCSSCCCHHHHHHHHHHTHHHHHH
T ss_pred cEEEEEEeCCEEccccceeccccHHHHHHHHHHHHHhccccchhhhcccccccccccCCCccCccHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998653 222211 1 355899999
Q ss_pred Hhccccccc--hHHHHhhcccCccceeeeeCCCCceEEeCCc-cccccccccCCCCCCC---------------------
Q 019039 215 EKLCYISYD--YKREYQLGLETTILVKNYTLPDGRVIKVGTE-RFQAPEALFTPELIDV--------------------- 270 (347)
Q Consensus 215 ~~~~~v~~~--~~~~~~~~~~~~~~~~~~~lpdg~~i~i~~~-~~~~~E~lF~p~~~~~--------------------- 270 (347)
|++|||+.+ +.++.. ...+...+.|+||||+.|.++.| ||.+||.||+|++++.
T Consensus 253 E~~c~Va~~~~~~~~~~--~~~~~~~~~yeLPDG~~i~lg~E~Rf~~pE~LF~P~~~g~~~~~~~~~~~~~~~~~~~y~~ 330 (498)
T 3qb0_A 253 ETLCHICPTKTLEETKT--ELSSTAKRSIESPWNEEIVFDNETRYGFAEELFLPKEDDIPANWPRSNSGVVKTWRNDYVP 330 (498)
T ss_dssp HHTCCCCSSCHHHHHHH--HHHTCCCEEEECSSSCEEEECHHHHHHHHHTTTSCCGGGSCTTSCCCSSSCCCCCSCCCCC
T ss_pred HhhEEecCCccHhHHhh--hccCcCceEEECCCCCEEEECchHhhhCchhhCCHhHcCCccccccccccccccccccccc
Confidence 999999987 444321 12345678999999999999999 9999999999986643
Q ss_pred -----------------------------------------------------------CCCCHHHHHHHHHHhCCHHHH
Q 019039 271 -----------------------------------------------------------EGDGMADMVFRCIQEMDIDNR 291 (347)
Q Consensus 271 -----------------------------------------------------------~~~~l~~~i~~~i~~~~~d~r 291 (347)
+..||++++.++|.+||+|+|
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~e~i~~sI~~cd~d~r 410 (498)
T 3qb0_A 331 LKRTKPSGVNKSDKKVTPTEEKEQEAVSKSTSPAANSADTPNETGKRPLEEEKPPKENNELIGLADLVYSSIMSSDVDLR 410 (498)
T ss_dssp CCBCC-----------------------------------------------------CCSCCHHHHHHHHHHTSCTTTH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCchHHHHHHHHhCCHHHH
Confidence 567899999999999999999
Q ss_pred HhhhcceEEecCCCCCCChHHHHHHHHhhcCCCCCeeeeec--CCccccccccccccC
Q 019039 292 MMLYQHIVLSGGSTMYPGLPSRYYVELFFASHDIPLCFLRN--LGLHVYSLFLSVFVL 347 (347)
Q Consensus 292 ~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~~~~~~--~~~~~~s~w~G~~~~ 347 (347)
+.|++||||+||+|++|||.+||++||..+.|..++++... ..++.|++|+|||||
T Consensus 411 ~~L~~nIvLsGGst~~pGf~~Rl~~El~~l~p~~~i~v~~~~~~~er~~s~WiGgsil 468 (498)
T 3qb0_A 411 ATLAHNVVLTGGTSSIPGLSDRLMTELNKILPSLKFRILTTGHTIERQYQSWLGGSIL 468 (498)
T ss_dssp HHHHTTEEEESGGGGSTTHHHHHHHHHHHHSTTSCCCEECCSCTGGGGSHHHHHHHHH
T ss_pred HHHhcCEEEeCCccCchhHHHHHHHHHHHhCCCCeeEEEcCCCCCccCccEEcccEEE
Confidence 99999999999999999999999999999999777776543 378999999999975
|
| >3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* | Back alignment and structure |
|---|
| >2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... | Back alignment and structure |
|---|
| >4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A | Back alignment and structure |
|---|
| >4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A* | Back alignment and structure |
|---|
| >1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A | Back alignment and structure |
|---|
| >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
| >3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} | Back alignment and structure |
|---|
| >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 | Back alignment and structure |
|---|
| >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ... | Back alignment and structure |
|---|
| >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* | Back alignment and structure |
|---|
| >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} | Back alignment and structure |
|---|
| >2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
| >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* | Back alignment and structure |
|---|
| >4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var} | Back alignment and structure |
|---|
| >2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* | Back alignment and structure |
|---|
| >4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D | Back alignment and structure |
|---|
| >4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* | Back alignment and structure |
|---|
| >4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} | Back alignment and structure |
|---|
| >3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
| >2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A | Back alignment and structure |
|---|
| >2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A | Back alignment and structure |
|---|
| >1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 | Back alignment and structure |
|---|
| >4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A | Back alignment and structure |
|---|
| >1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A* | Back alignment and structure |
|---|
| >3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
| >1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A* | Back alignment and structure |
|---|
| >3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
| >1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5 | Back alignment and structure |
|---|
| >2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
| >3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A* | Back alignment and structure |
|---|
| >3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
| >4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus} | Back alignment and structure |
|---|
| >3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A | Back alignment and structure |
|---|
| >2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str} | Back alignment and structure |
|---|
| >3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus} | Back alignment and structure |
|---|
| >3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A | Back alignment and structure |
|---|
| >1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, struc genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5 | Back alignment and structure |
|---|
| >2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14 | Back alignment and structure |
|---|
| >3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705} | Back alignment and structure |
|---|
| >3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
| >2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A* | Back alignment and structure |
|---|
| >2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A* | Back alignment and structure |
|---|
| >2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A* | Back alignment and structure |
|---|
| >1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5 | Back alignment and structure |
|---|
| >2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 347 | ||||
| d2fxua2 | 225 | c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxI | 4e-61 | |
| d1k8kb1 | 190 | c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 | 1e-60 | |
| d1k8ka2 | 258 | c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 | 1e-51 | |
| d2fxua1 | 140 | c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: | 9e-50 | |
| d1k8ka1 | 158 | c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 { | 2e-46 |
| >d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin species: Cow (Bos taurus) [TaxId: 9913]
Score = 193 bits (491), Expect = 4e-61
Identities = 82/168 (48%), Positives = 114/168 (67%)
Query: 150 TGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFET 209
TG+V+DSGDGVTH VP+ +GY+ PH R+++AGR +T YL+ +L+ RGYS TA+ E
Sbjct: 3 TGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREI 62
Query: 210 VRQIKEKLCYISYDYKREYQLGLETTILVKNYTLPDGRVIKVGTERFQAPEALFTPELID 269
VR IKEKLCY++ D++ E ++ L K+Y LPDG+VI +G ERF+ PE LF P I
Sbjct: 63 VRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIG 122
Query: 270 VEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRYYVE 317
+E G+ + + I + DID R LY + V+SGG+TMYPG+ R E
Sbjct: 123 MESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKE 170
|
| >d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Length = 190 | Back information, alignment and structure |
|---|
| >d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 258 | Back information, alignment and structure |
|---|
| >d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 140 | Back information, alignment and structure |
|---|
| >d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 158 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 347 | |||
| d2fxua2 | 225 | Actin {Cow (Bos taurus) [TaxId: 9913]} | 100.0 | |
| d1k8kb1 | 190 | Actin-related protein 2, Arp2 {Cow (Bos taurus) [T | 100.0 | |
| d1k8ka2 | 258 | Actin-related protein 3, Arp3 {Cow (Bos taurus) [T | 100.0 | |
| d1k8ka1 | 158 | Actin-related protein 3, Arp3 {Cow (Bos taurus) [T | 100.0 | |
| d2fxua1 | 140 | Actin {Cow (Bos taurus) [TaxId: 9913]} | 100.0 | |
| d1e4ft2 | 191 | Cell division protein FtsA {Thermotoga maritima [T | 99.27 | |
| d1jcea2 | 196 | Prokaryotic actin homolog MreB {Thermotoga maritim | 98.91 | |
| d1jcea1 | 137 | Prokaryotic actin homolog MreB {Thermotoga maritim | 98.66 | |
| d1dkgd2 | 198 | Heat shock protein 70kDa, ATPase fragment {Escheri | 98.63 | |
| d1bupa2 | 193 | Heat shock protein 70kDa, ATPase fragment {Cow (Bo | 98.31 | |
| d2zgya2 | 163 | Plasmid segregation protein ParM {Escherichia coli | 98.15 | |
| d2fsja1 | 161 | Hypothetical protein Ta0583 {Archaeon Thermoplasma | 98.03 | |
| d1dkgd1 | 183 | Heat shock protein 70kDa, ATPase fragment {Escheri | 98.03 | |
| d1bupa1 | 185 | Heat shock protein 70kDa, ATPase fragment {Cow (Bo | 98.03 | |
| d1q18a1 | 110 | Glucokinase Glk {Escherichia coli [TaxId: 562]} | 93.21 | |
| d2zgya1 | 157 | Plasmid segregation protein ParM {Escherichia coli | 93.02 | |
| d2fsja2 | 164 | Hypothetical protein Ta0583 {Archaeon Thermoplasma | 92.82 | |
| d1u6za3 | 177 | Exopolyphosphatase Ppx {Escherichia coli [TaxId: 5 | 90.81 | |
| d1t6ca2 | 180 | Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 6 | 90.51 | |
| d1zc6a1 | 114 | Probable N-acetylglucosamine kinase CV2896 {Chromo | 85.59 |
| >d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=8.3e-45 Score=314.53 Aligned_cols=199 Identities=43% Similarity=0.775 Sum_probs=184.4
Q ss_pred CceEEEEecCCCceEEEEeecCeecccceeEecccHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHhccccccchHHH
Q 019039 148 LLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKRE 227 (347)
Q Consensus 148 ~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~ 227 (347)
++||||||+|++.|+|+||+||++++++++++++||++++++|.++|.+++.......+.+.++++|+.+|+++.+...+
T Consensus 1 rtTglVVDiG~~~t~v~PV~eG~~l~~~~~~~~~GG~~lt~~l~~~L~~~~~~~~~~~~~~~~~~~ke~~~~~~~d~~~e 80 (225)
T d2fxua2 1 RTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENE 80 (225)
T ss_dssp CSSEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHCCCCSSHHHH
T ss_pred CCEEEEEEcCCCcEEEEEEECCEEchhceEEEECcHHHHHHHHHHHHhhccCCcCCHHHHHHHHHHHHHHhhcccchhHH
Confidence 57999999999999999999999999999999999999999999999999888777778899999999999999999888
Q ss_pred HhhcccCccceeeeeCCCCceEEeCCccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcceEEecCCCCC
Q 019039 228 YQLGLETTILVKNYTLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMY 307 (347)
Q Consensus 228 ~~~~~~~~~~~~~~~lpdg~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i 307 (347)
.............|.+|||+.+.++.+|+.+||.||+|...+.+..+|+++|.++|.+||.|+|+.|++||+|+||+|++
T Consensus 81 ~~~~~~~~~~~~~~~lpdg~~i~i~~er~~~~E~lF~p~~~~~~~~gl~~~i~~sI~~~~~d~r~~l~~nIvl~GG~s~~ 160 (225)
T d2fxua2 81 MATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMY 160 (225)
T ss_dssp HHHHHHCSTTCEEEECTTSCEEEESTHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHHTSCHHHHHHHHTCEEEESGGGCS
T ss_pred HhhcccCcccceeEECCCCCEEEEchHhccccHhhcCccccCCccCChhHHHHHHhhcCCcchhhhhhcCEEEeCCcccC
Confidence 77766677778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHhhcCCCC-CeeeeecCCccccccccccccC
Q 019039 308 PGLPSRYYVELFFASHDI-PLCFLRNLGLHVYSLFLSVFVL 347 (347)
Q Consensus 308 ~G~~erl~~eL~~~~~~~-~~~~~~~~~~~~~s~w~G~~~~ 347 (347)
|||.+||++||..+.|.. +++ +.....+.|++|+|||++
T Consensus 161 ~G~~~RL~~El~~~~~~~~~~~-v~~~~~~~~~aW~Ggsil 200 (225)
T d2fxua2 161 PGIADRMQKEITALAPSTMKIK-IIAPPERKYSVWIGGSIL 200 (225)
T ss_dssp TTHHHHHHHHHHHHSCTTCCCC-EECCTTTTSHHHHHHHHH
T ss_pred CchhHHHHhHHHHhhccccceE-EecCCCCCeeEEeCHhhh
Confidence 999999999999998854 444 445568899999999974
|
| >d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
| >d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1q18a1 c.55.1.7 (A:2-111) Glucokinase Glk {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2zgya1 c.55.1.1 (A:1-157) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2fsja2 c.55.1.12 (A:1-164) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
| >d1u6za3 c.55.1.8 (A:136-312) Exopolyphosphatase Ppx {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1t6ca2 c.55.1.8 (A:133-312) Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
| >d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase CV2896 {Chromobacterium violaceum [TaxId: 536]} | Back information, alignment and structure |
|---|