Citrus Sinensis ID: 019054

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------
Protein Sequence
MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVSR
Secondary Structure (PSIPRED)
ccccEEEEEEEEccEEEcEEEEEEccccccHHHHHHHHHHHcccccccccccccccccccccEEEcccEEEcccccccccccccccccccccccccccccccccEEEccccccccccccEEEEccccccccccccEEEEEEEcHHHHHHHHHccccccccccccEEEEcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcHHHHHHccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEEccEEEEEEEEEEcccccHHHHHHHHHHHHccccEccccccEccccccEEEEEEcccEEEEccccccccccccccccccEcccccccccccccEEEEcccccccEcccEEEEccccHHHcccccEEEEEEEcHHHHHHHHcccEcccccEcccEEEEEEEEccccccccccccccccccccccHHHcccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
marprcfldISIGVELEGRIIVEIYNDVIPKTAENFRALCtgekgigpntgvplhykgvRFHRVIKGFMiqggdisagdgtggesiyglkfedenfeLKHERKGMLSmanagpntngsqffitttrtshldgkhVVFGRVIKGMGVVRSIEHvmtgdndcpiadvtitdcgeipegaddgisnffndgdsypdwpadldqtpnELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICwekegidegkssslrktksqiftnssacklKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALklepndggiKKELAVAKKKVSR
Flexible Loop (DISEMBL)
marprcfldisigvelegRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHvmtgdndcpiaDVTITDCGEIPEGADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWekegidegkssslrktksqiftnssacklkLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKAlklepndggikkelavakkkvsr
Low Complexity Region (SEG)
MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQggdisagdgtggESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACklklgdlkgalldTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVSR
Disordered region (IsUnstruct)
****RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENF*********************SQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGI**************IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESF**************************
Disordered Region (DISOPRED)
*ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVR***************DVTITDCGEIPEGADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGI*EGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK***
Disordered Region (DISEMBL)
MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL*********
Disordered Region (DISPRO)
*ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVSR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVSR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	347	2.2.26 [Sep-21-2011]
Q9C566	361	Peptidyl-prolyl cis-trans	yes	no	0.997	0.958	0.815	1e-171
Q6DGG0	370	Peptidyl-prolyl cis-trans	yes	no	0.976	0.916	0.5	7e-91
Q9CR16	370	Peptidyl-prolyl cis-trans	yes	no	0.976	0.916	0.497	2e-90
P26882	370	Peptidyl-prolyl cis-trans	yes	no	0.982	0.921	0.488	7e-90
Q08752	370	Peptidyl-prolyl cis-trans	yes	no	0.982	0.921	0.491	9e-89
P0C1I1	364	Peptidyl-prolyl cis-trans	N/A	no	0.953	0.909	0.511	1e-88
Q9P3X9	375	41 kDa peptidyl-prolyl ci	N/A	no	0.962	0.890	0.491	2e-83
Q4HXF6	372	Peptidyl-prolyl cis-trans	yes	no	0.965	0.900	0.492	2e-79
Q4WIF3	377	Peptidyl-prolyl cis-trans	yes	no	0.968	0.891	0.477	9e-79
Q5B4E7	372	Peptidyl-prolyl cis-trans	yes	no	0.974	0.908	0.488	2e-78

>sp|Q9C566|CYP40_ARATH Peptidyl-prolyl cis-trans isomerase CYP40 OS=Arabidopsis thaliana GN=CYP40 PE=2 SV=1

 Score =  602 bits (1553), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 282/346 (81%), Positives = 307/346 (88%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M R +CF+DISIG ELEGRI++E+Y+DV+PKTAENFR LCTGEKG+GPNTGVPLHYKG R
Sbjct: 1   MGRSKCFMDISIGGELEGRIVIELYDDVVPKTAENFRLLCTGEKGLGPNTGVPLHYKGNR 60

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRVIKGFMIQGGDISA DGTGGESIYGLKF+DENFELKHERKGMLSMAN+GPNTNGSQF
Sbjct: 61  FHRVIKGFMIQGGDISANDGTGGESIYGLKFDDENFELKHERKGMLSMANSGPNTNGSQF 120

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FITTTRTSHLDGKHVVFGRV KGMGVVRSIEHV   +  CP  DV I DCGEIPEGADDG
Sbjct: 121 FITTTRTSHLDGKHVVFGRVTKGMGVVRSIEHVSIEEQSCPSQDVVIHDCGEIPEGADDG 180

Query: 181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
           I +FF DGD YPDWP DL+++P ELSWWM  VD +K  GNEH+KKQDYKMALRKYRKALR
Sbjct: 181 ICDFFKDGDVYPDWPIDLNESPAELSWWMETVDFVKAHGNEHFKKQDYKMALRKYRKALR 240

Query: 241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300
           YLDICWEKEGIDE  S++LRKTKSQIFTNS+ACKLK GD KGALLDTEFAMRD D+NVKA
Sbjct: 241 YLDICWEKEGIDEETSTALRKTKSQIFTNSAACKLKFGDAKGALLDTEFAMRDEDNNVKA 300

Query: 301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346
           LFRQGQAYMALN+VDAA ES EKAL+ EPND GIKKE A   KK++
Sbjct: 301 LFRQGQAYMALNNVDAAAESLEKALQFEPNDAGIKKEYAAVMKKIA 346

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Involved in promoting the expression of the juvenile phase of vegetative development, and, to a lower extent, in regulating the positioning of floral buds, floral morphogenesis and the expression of HSPs.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

>sp|Q6DGG0|PPID_RAT Peptidyl-prolyl cis-trans isomerase D OS=Rattus norvegicus GN=Ppid PE=1 SV=3

 Score =  334 bits (856), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 171/342 (50%), Positives = 225/342 (65%), Gaps = 3/342 (0%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           PR F D+ IG E  GRI++E++ D++PKTAENFRALCTGEKG GP TG PLH+KG  FHR
Sbjct: 16  PRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGTGPTTGKPLHFKGCPFHR 75

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           +IK FMIQGGD S  +GTGGESIYG KFEDENF  KH+R+G+LSMANAGPNTNGSQFFIT
Sbjct: 76  IIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFIT 135

Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGISN 183
           T  T HLDGKHVVFG+VIKG+GV R +E+V   + + P     I +CGE+ EG + GI  
Sbjct: 136 TVPTPHLDGKHVVFGQVIKGLGVARMLENVEV-NGEKPAKLCVIAECGELKEGDEWGIFP 194

Query: 184 FFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLD 243
               GDS+PD+P D D    ++   +   + +K  GN  +K Q+++MA++KY K LRYLD
Sbjct: 195 KDGSGDSHPDFPEDADIDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYAKVLRYLD 254

Query: 244 ICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFR 303
               K  I++   S L+        N  ACKLK+ + +GA+     A+     N KAL+R
Sbjct: 255 S--SKAVIEKADVSRLQPIALSCVLNIGACKLKMSNWQGAIDSCLEALEMDPSNTKALYR 312

Query: 304 QGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV 345
           + Q +  L + D A+   +KA ++ P D  I+ EL   K+ +
Sbjct: 313 KAQGWQGLKEYDQALADLKKAQEIAPGDKAIQAELLKVKQMI 354

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Rattus norvegicus (taxid: 10116)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9CR16|PPID_MOUSE Peptidyl-prolyl cis-trans isomerase D OS=Mus musculus GN=Ppid PE=1 SV=3

 Score =  332 bits (852), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 170/342 (49%), Positives = 225/342 (65%), Gaps = 3/342 (0%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           PR F D+ IG E  GRI++E++ D++PKTAENFRALCTGEKG G  TG PLH+KG  FHR
Sbjct: 16  PRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGTGSTTGKPLHFKGCPFHR 75

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           +IK FMIQGGD S  +GTGGESIYG KFEDENF  KH+R+G+LSMANAGPNTNGSQFFIT
Sbjct: 76  IIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFIT 135

Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGISN 183
           T  T HLDGKHVVFG+VIKG+GV R++E+V   + + P     I +CGE+ EG D GI  
Sbjct: 136 TVPTPHLDGKHVVFGQVIKGLGVARTLENVEV-NGEKPAKLCVIAECGELKEGDDWGIFP 194

Query: 184 FFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLD 243
               GDS+PD+P D D    ++   +   + +K  GN  +K Q+++MA++KY K LRY+D
Sbjct: 195 KDGSGDSHPDFPEDADIDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYAKVLRYVD 254

Query: 244 ICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFR 303
               K  I++   S L+        N  ACKLK+ + +GA+     A+     N KAL+R
Sbjct: 255 S--SKAVIEKADRSRLQPIALSCVLNIGACKLKMSNWQGAIDSCLEALEMDPSNTKALYR 312

Query: 304 QGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV 345
           + Q +  L + D A+   +KA ++ P D  I+ EL   K+ +
Sbjct: 313 KAQGWQGLKEYDQALADLKKAQEIAPGDKAIQAELLKVKQMI 354

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P26882|PPID_BOVIN Peptidyl-prolyl cis-trans isomerase D OS=Bos taurus GN=PPID PE=1 SV=6

 Score =  330 bits (847), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 168/344 (48%), Positives = 225/344 (65%), Gaps = 3/344 (0%)

Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
           + PR F D+ IG E  GRI++E++ D++PKTAENFRALCTGEKGIGP TG PLH+KG  F
Sbjct: 14  SNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPF 73

Query: 62  HRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HR+IK FMIQGGD S  +GTGGESIYG KFEDENF  KH+++G+LSMANAG NTNGSQFF
Sbjct: 74  HRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFF 133

Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGI 181
           ITT  T HLDGKHVVFG+VIKGMGV + +E+V     + P     I +CGE+ EG D GI
Sbjct: 134 ITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEV-KGEKPAKLCVIAECGELKEGDDWGI 192

Query: 182 SNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRY 241
                 GDS+PD+P D D    ++   +   + +K  GN  +K Q+++MA++KY K LRY
Sbjct: 193 FPKDGSGDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRY 252

Query: 242 LDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKAL 301
           ++    +   ++   + L+        N  ACKLK+ D +GA+     A+     N KAL
Sbjct: 253 VE--GSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKAL 310

Query: 302 FRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV 345
           +R+ Q +  L + D A+   +KA ++ P D  I+ EL   K+K+
Sbjct: 311 YRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI 354

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Bos taurus (taxid: 9913)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q08752|PPID_HUMAN Peptidyl-prolyl cis-trans isomerase D OS=Homo sapiens GN=PPID PE=1 SV=3

 Score =  327 bits (838), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 169/344 (49%), Positives = 223/344 (64%), Gaps = 3/344 (0%)

Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
           + PR F D+ IG E  GRI++E++ D++PKTAENFRALCTGEKGIG  TG PLH+KG  F
Sbjct: 14  SNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGHTTGKPLHFKGCPF 73

Query: 62  HRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HR+IK FMIQGGD S  +GTGGESIYG KFEDENF  KH+R+G+LSMANAG NTNGSQFF
Sbjct: 74  HRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGRNTNGSQFF 133

Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGI 181
           ITT  T HLDGKHVVFG+VIKG+GV R +E+V     + P     I +CGE+ EG D GI
Sbjct: 134 ITTVPTPHLDGKHVVFGQVIKGIGVARILENVEV-KGEKPAKLCVIAECGELKEGDDGGI 192

Query: 182 SNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRY 241
                 GDS+PD+P D D    ++   +   + +K  GN  +K Q+++MA++KY + LRY
Sbjct: 193 FPKDGSGDSHPDFPEDADIDLKDVDKILLITEDLKNIGNTFFKSQNWEMAIKKYAEVLRY 252

Query: 242 LDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKAL 301
           +D    K  I+    + L+        N  ACKLK+ + +GA+     A+     N KAL
Sbjct: 253 VD--SSKAVIETADRAKLQPIALSCVLNIGACKLKMSNWQGAIDSCLEALELDPSNTKAL 310

Query: 302 FRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV 345
           +R+ Q +  L + D A+   +KA  + P D  I+ EL   K+K+
Sbjct: 311 YRRAQGWQGLKEYDQALADLKKAQGIAPEDKAIQAELLKVKQKI 354

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P0C1I1|PPID_RHIO9 Peptidyl-prolyl cis-trans isomerase D OS=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) GN=cyp12 PE=3 SV=1

 Score =  327 bits (837), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 178/348 (51%), Positives = 226/348 (64%), Gaps = 17/348 (4%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M+ PR + DI+IG + EGRI+ E++ D++PKTAENFRALCTGEKG G  +G PL Y+G  
Sbjct: 1   MSNPRVYFDITIGNKPEGRIVFELFKDIVPKTAENFRALCTGEKGEG-KSGKPLSYQGSL 59

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+IK FMIQGGD +AG+GTGGESIYG KFEDENF LKHE+  +LSMANAGP TNGSQF
Sbjct: 60  FHRIIKNFMIQGGDFTAGNGTGGESIYGEKFEDENFVLKHEKPFLLSMANAGPGTNGSQF 119

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FITT  T HLDGKHVVFG+V+KG  VVR++E++ T  +D P+ D  I  CGE+ EG DDG
Sbjct: 120 FITTVPTPHLDGKHVVFGKVLKGKAVVRALENLETV-SDRPVEDAVIAKCGELAEGEDDG 178

Query: 181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
           I     DGD Y ++P D  + P E +  +     +K  GN ++KK D+  A +KY KA+R
Sbjct: 179 IRA-SEDGDVYEEYPDD-HEGPKEPNDVLQIATHLKDIGNTYFKKGDHANAAKKYLKAIR 236

Query: 241 YLDICWEKEGIDEGKSSSLR----KTKSQIFTNSSACKLKLGD------LKGALLDTEFA 290
           YL+   EK   DE     L       K   + N S C LKLG+      +   +L+ +  
Sbjct: 237 YLN---EKPAFDENDPKELEGKFAAIKIPCYLNRSMCALKLGEYSECVKVTTTVLEYDSK 293

Query: 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
                D  KA FR+G A M   D + A+E FEKA + +P D GIKKEL
Sbjct: 294 YLKPTDITKAYFRRGSAKMNTRDFEGAIEDFEKAHEKDPEDAGIKKEL 341

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) (taxid: 246409)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9P3X9|PPID_NEUCR 41 kDa peptidyl-prolyl cis-trans isomerase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=cyp-41 PE=1 SV=1

 Score =  309 bits (791), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 171/348 (49%), Positives = 215/348 (61%), Gaps = 14/348 (4%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
            AR R F DI+IG +  GRI+ E+YND++PKTAENFRALCTGEKG+G   G PLHYKG  
Sbjct: 9   QARSRVFFDITIGGKAAGRIVFELYNDIVPKTAENFRALCTGEKGVG-KLGKPLHYKGST 67

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRVIK FMIQGGD +AG+GTGGESIYG KFEDENF+LKH+R  +LSMANAGP TNGSQF
Sbjct: 68  FHRVIKQFMIQGGDFTAGNGTGGESIYGAKFEDENFQLKHDRPFLLSMANAGPGTNGSQF 127

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI----PEG 176
           F+TT  T HLDGKHVVFG V+ G  VVR IE++ T   D P  D  I DCGE+       
Sbjct: 128 FVTTVPTPHLDGKHVVFGEVLSGKSVVRQIENLKT-QGDKPTKDAVIADCGELSGDAAVS 186

Query: 177 ADDGISNFFNDGDSYPDWPAD--LDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRK 234
           AD   ++ +  GD Y D+P D   D  P   S  +      K FGN+ +K  D  +AL K
Sbjct: 187 ADTKTADAY--GDEYEDFPEDEATDGQPLSASKILKIATDCKDFGNKAFKAGDLPVALDK 244

Query: 235 YRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR-- 292
           Y+K LRYL+   E +         L   +  + +N++   +KL      +   + A+   
Sbjct: 245 YQKGLRYLNEDPELDNEPADTKQKLDALRVSLNSNAALMNMKLSAWDECIRSADGALAVA 304

Query: 293 --DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
                D  KAL+R+G A + + D D+A+ S E+A KL P DG I  EL
Sbjct: 305 TISDKDRAKALYRRGYAQVRIKDEDSALTSLEEAKKLAPEDGAIVNEL 352

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q4HXF6|PPID_GIBZE Peptidyl-prolyl cis-trans isomerase D OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=CPR6 PE=3 SV=1

 Score =  296 bits (757), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 169/343 (49%), Positives = 211/343 (61%), Gaps = 8/343 (2%)

Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
           ARPR + DISIG +  GRI +E+Y D++PKTA+NFR+LCTGEKGIG  +G PLHYKG  F
Sbjct: 9   ARPRVYFDISIGGKSVGRITMELYADLVPKTADNFRSLCTGEKGIG-KSGKPLHYKGSVF 67

Query: 62  HRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HRVIK FMIQGGD +AGDGTGGESIYG KF+DE F +KHE+  +LSMANAGPNTNGSQFF
Sbjct: 68  HRVIKQFMIQGGDFTAGDGTGGESIYGNKFDDEAFPIKHEKPFLLSMANAGPNTNGSQFF 127

Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGI 181
           ITT  T HLDGKHVVFG V+ G  VVR IE++ T   D P  +  I DCGE+   A    
Sbjct: 128 ITTVPTPHLDGKHVVFGEVLNGKSVVRQIENLTTQSGDRPAKEALIVDCGELTGDAALAA 187

Query: 182 SNFFND--GDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKAL 239
                D  GD Y D+P D   T + ++    A  S K +GN  +K  +Y + L KY+K L
Sbjct: 188 DVKQPDALGDPYEDFPEDCTDTLDAVAVLKIAKAS-KDYGNTAFKSGNYSLGLDKYQKGL 246

Query: 240 RYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG----D 295
           RY++   E E   +     L   +  +  NS+   +KL     A      A+  G     
Sbjct: 247 RYINEEPELEDQPQSIKDELEALRFSLNNNSALLNIKLEAWDDAARSASAALEVGGVKDA 306

Query: 296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
           D  KA +R+G A + L D +AAV    +A KL PND  I +EL
Sbjct: 307 DRAKAFYRRGLANIHLKDEEAAVRDLTEANKLAPNDSAITREL 349

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) (taxid: 229533)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q4WIF3|PPID_ASPFU Peptidyl-prolyl cis-trans isomerase D OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=cpr6 PE=3 SV=1

 Score =  293 bits (751), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 173/362 (47%), Positives = 214/362 (59%), Gaps = 26/362 (7%)

Query: 3   RPRCFLDISIGVELEGRIIVEI----YNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKG 58
           RPR + DI IG +  GRI +E+    +NDV+PKTAENFRALCTGEKG+G     PL YKG
Sbjct: 7   RPRVYFDIQIGSQKAGRIALELVRLPFNDVVPKTAENFRALCTGEKGVGKQRK-PLSYKG 65

Query: 59  VRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGS 118
             FHRVIK FMIQGGD +  +GTGGESIYG KF DENFELKH+R  +LSMAN+GP TNGS
Sbjct: 66  SIFHRVIKQFMIQGGDFTNFNGTGGESIYGEKFPDENFELKHDRPFLLSMANSGPGTNGS 125

Query: 119 QFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIP---- 174
           QFFITT  T HLDGKHVVFG VI G  +VR IE++ T   D P  DVTI DCGE+     
Sbjct: 126 QFFITTVPTPHLDGKHVVFGEVINGKSIVRKIENMPT-QADKPTTDVTIVDCGELSGEDY 184

Query: 175 EGADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRK 234
           E A   +++    GD Y D+P D                 +K FGN  +K  D  + L K
Sbjct: 185 ENATKQVAD--ATGDPYEDYPDDHQGEELNAQVCFKIASELKNFGNTAFKSGDVALGLDK 242

Query: 235 YRKALRYLDICWEKEGID----EGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290
           Y+K LRYL+   + +  D    E +  SLR T   + +NSS    KLG  K A     +A
Sbjct: 243 YQKGLRYLNEFPDPDENDPKDLEPQMKSLRFT---LHSNSSLLANKLGQYKNAQNWATYA 299

Query: 291 MRDGD-------DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK 343
           +   D       D  KA +R+  AY    + D A++  ++ALKL P D GI  E+A  KK
Sbjct: 300 LEVADAANAKEADRAKAYYRRAVAYSGQKEEDEALKDLQEALKLAPGDAGILNEIAKVKK 359

Query: 344 KV 345
            +
Sbjct: 360 AI 361

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q5B4E7|PPID_EMENI Peptidyl-prolyl cis-trans isomerase D OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=cpr6 PE=3 SV=1

 Score =  293 bits (749), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 174/356 (48%), Positives = 208/356 (58%), Gaps = 18/356 (5%)

Query: 3   RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFH 62
           RPR F DI IG +  GRI  E++NDV+PKTAENFRALCTGEKG+G   G PLH+KG  FH
Sbjct: 6   RPRVFFDIQIGQQQTGRIAFELFNDVVPKTAENFRALCTGEKGMG-KQGKPLHFKGSIFH 64

Query: 63  RVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFI 122
           RVIK FMIQGGD +A +GTGGESIYG KF DENFELKH+R  +LSMAN+GP TNGSQFFI
Sbjct: 65  RVIKQFMIQGGDFTAFNGTGGESIYGEKFPDENFELKHDRPFLLSMANSGPGTNGSQFFI 124

Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGIS 182
           TT  T HLDGKHVVFG VI G  VVR IE++ T   D P  DVTI +CGE+     D   
Sbjct: 125 TTVPTPHLDGKHVVFGEVINGKSVVRKIENMPT-QADKPTTDVTIAECGELTGEDYDNAD 183

Query: 183 NFFND--GDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
               D  GD Y D+P D                 +K FGN  +K  +  + L KY+K LR
Sbjct: 184 KQTPDATGDPYEDFPDDHQGEELSAPVCFKIASELKNFGNTAFKNGNIALGLEKYQKGLR 243

Query: 241 YLDICWEKEGID----EGKSSSLRKTKSQIFTNSSACKLKLGDLKG-------ALLDTEF 289
           YL+   E E  D    E +  SLR T   + +NSS    KLG  K        AL   + 
Sbjct: 244 YLNEFPEPEENDPKDLEPQMKSLRFT---LHSNSSLLANKLGQFKNGKTWATYALDVADA 300

Query: 290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV 345
           A     D  K  +R+  A   L + D A++  E+A  L P+D  I  E A  KK +
Sbjct: 301 ASAKDADRAKVYYRRAVAESGLKEEDEALKDLEQASTLAPSDAAIAAETARVKKAI 356

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	347
225428707	361	PREDICTED: peptidyl-prolyl cis-trans iso	0.997	0.958	0.855	0.0
255561673	361	peptidyl-prolyl cis-trans isomerase d, p	0.997	0.958	0.864	1e-179
356521481	361	PREDICTED: peptidyl-prolyl cis-trans iso	0.997	0.958	0.855	1e-178
224103535	370	predicted protein [Populus trichocarpa]	0.997	0.935	0.843	1e-178
449438434	361	PREDICTED: peptidyl-prolyl cis-trans iso	0.997	0.958	0.843	1e-177
363807868	361	uncharacterized protein LOC100804110 [Gl	0.997	0.958	0.846	1e-176
224123292	370	predicted protein [Populus trichocarpa]	0.997	0.935	0.841	1e-176
355329950	362	cyclophilin 40 [Nicotiana tabacum]	0.997	0.955	0.841	1e-176
449517543	361	PREDICTED: LOW QUALITY PROTEIN: peptidyl	0.997	0.958	0.841	1e-176
224081585	361	predicted protein [Populus trichocarpa]	0.997	0.958	0.846	1e-176

>gi|225428707|ref|XP_002284980.1| PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40 [Vitis vinifera] gi|297741330|emb|CBI32461.3| unnamed protein product [Vitis vinifera]

 Score =  640 bits (1651), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 296/346 (85%), Positives = 326/346 (94%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M RPRC+LDISIG ELEGR++VE+YND++P+TAENFRALCTGEKGIGPNTGVPLHYKGV 
Sbjct: 1   MGRPRCYLDISIGEELEGRVVVELYNDIVPRTAENFRALCTGEKGIGPNTGVPLHYKGVC 60

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRVI+GFMIQGGDISAG+GTGGESIYGLKFEDENFELKHERKGMLSMAN+G NTNGSQF
Sbjct: 61  FHRVIRGFMIQGGDISAGNGTGGESIYGLKFEDENFELKHERKGMLSMANSGANTNGSQF 120

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FITTTRTSHLDGKHVVFG+V+KGMGVVRSIEHV TGDNDCP  +V I DCGEIPEG D+G
Sbjct: 121 FITTTRTSHLDGKHVVFGKVVKGMGVVRSIEHVTTGDNDCPTVNVLIADCGEIPEGVDNG 180

Query: 181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
           +SNFF DGD+YPDWPADLD+ PN+LSWW NAVDS+K FGNEH+KKQDYKMALRKYRKALR
Sbjct: 181 VSNFFKDGDTYPDWPADLDENPNDLSWWTNAVDSVKAFGNEHFKKQDYKMALRKYRKALR 240

Query: 241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300
           YLDICWEKEGIDE KSS LRKTKS IFTNSSACKLKLGDLKGALLDT+FAMRD ++NVKA
Sbjct: 241 YLDICWEKEGIDEEKSSCLRKTKSLIFTNSSACKLKLGDLKGALLDTDFAMRDEENNVKA 300

Query: 301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346
           L+RQGQAYMALND+DAA ESF+KAL+LEPNDGGIK+ELA AKKK++
Sbjct: 301 LYRQGQAYMALNDIDAAAESFKKALELEPNDGGIKRELAAAKKKIA 346

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561673|ref|XP_002521846.1| peptidyl-prolyl cis-trans isomerase d, ppid, putative [Ricinus communis] gi|223538884|gb|EEF40482.1| peptidyl-prolyl cis-trans isomerase d, ppid, putative [Ricinus communis]

 Score =  633 bits (1632), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 299/346 (86%), Positives = 324/346 (93%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M RPRCFLDISIG ELEGRI++E+YNDV+PKTAENFRALCTGEKGIGPNTGVPLHYKG  
Sbjct: 1   MGRPRCFLDISIGGELEGRIVIELYNDVVPKTAENFRALCTGEKGIGPNTGVPLHYKGCP 60

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+IKGFM+QGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF
Sbjct: 61  FHRIIKGFMVQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FITTTRTSHLDGKHVVFG+V+KGMGVVRSIEHV TG+ D P  DV I DCGEIPEGADDG
Sbjct: 121 FITTTRTSHLDGKHVVFGKVVKGMGVVRSIEHVTTGEGDYPAVDVLIADCGEIPEGADDG 180

Query: 181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
           ISNFF DGD +PDWPADL  +PNELSWWM+AVDSIK FGNE YKK D+KMALRKYRKALR
Sbjct: 181 ISNFFKDGDIFPDWPADLSDSPNELSWWMDAVDSIKGFGNESYKKLDFKMALRKYRKALR 240

Query: 241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300
           YLDICWEK+GIDE KSSSLRKTKSQIFTNS+ACKLKLGDLKGALLDT+FAMR+GD+NVKA
Sbjct: 241 YLDICWEKDGIDEEKSSSLRKTKSQIFTNSAACKLKLGDLKGALLDTDFAMREGDNNVKA 300

Query: 301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346
           LFRQGQA+M LND+DAAVESF+KAL+LEPND GIKKELA A+KK++
Sbjct: 301 LFRQGQAHMLLNDIDAAVESFKKALQLEPNDAGIKKELAAARKKIN 346

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521481|ref|XP_003529384.1| PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40-like [Glycine max]

 Score =  631 bits (1627), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 296/346 (85%), Positives = 322/346 (93%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M R RCFLDISIG ELEGRI+VE+Y+DV+PKTAENFRALCTGEKGIGPNTGVPLH+KG  
Sbjct: 1   MGRGRCFLDISIGQELEGRIVVELYDDVVPKTAENFRALCTGEKGIGPNTGVPLHFKGSC 60

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMAN+GPNTNGSQF
Sbjct: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANSGPNTNGSQF 120

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FI+TTRTSHLDGKHVVFG+V+KGMGVVRS+EHV TGD+D P  DV + DCGEIPEG DDG
Sbjct: 121 FISTTRTSHLDGKHVVFGKVVKGMGVVRSVEHVATGDDDRPALDVKVVDCGEIPEGEDDG 180

Query: 181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
           ISNFF DGD+YPDWPADLD++PNEL WWM +VDSIK FGNE+Y+KQDYKMALRKYRKALR
Sbjct: 181 ISNFFKDGDTYPDWPADLDESPNELEWWMKSVDSIKAFGNEYYRKQDYKMALRKYRKALR 240

Query: 241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300
           YLDICWEKEGIDE  SSSLRKTKSQIFTNSSA KLKLGD+KGALLDTEFAMR+GDDN KA
Sbjct: 241 YLDICWEKEGIDEEISSSLRKTKSQIFTNSSASKLKLGDIKGALLDTEFAMREGDDNAKA 300

Query: 301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346
           LFRQGQAYMAL+D+DAAVESF+KAL LEPND GIKKELA A+K ++
Sbjct: 301 LFRQGQAYMALHDIDAAVESFKKALTLEPNDAGIKKELAAARKMIA 346

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103535|ref|XP_002313093.1| predicted protein [Populus trichocarpa] gi|222849501|gb|EEE87048.1| predicted protein [Populus trichocarpa]

 Score =  629 bits (1623), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 292/346 (84%), Positives = 322/346 (93%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M R RCFLDISIG ELEGRI++E+YNDV+PKTAENFRALCTGEKG+GPNTGVPLHYKG  
Sbjct: 1   MRRSRCFLDISIGGELEGRIVIELYNDVVPKTAENFRALCTGEKGVGPNTGVPLHYKGCC 60

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR IKGFM+QGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMAN+GPNTNGSQF
Sbjct: 61  FHRAIKGFMVQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANSGPNTNGSQF 120

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FITTTRTSHLDGKHVVFG+V+KGMGVVRS+EHV TGD DCP +DV I DCGEIPE ADDG
Sbjct: 121 FITTTRTSHLDGKHVVFGKVVKGMGVVRSMEHVTTGDADCPASDVIIVDCGEIPEDADDG 180

Query: 181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
           I NFF DGD+YPDWPADL++ PNELSWWM+AVDSIK FGNEH+KKQDYKMAL+KYRKALR
Sbjct: 181 ICNFFKDGDAYPDWPADLNEIPNELSWWMSAVDSIKAFGNEHFKKQDYKMALKKYRKALR 240

Query: 241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300
           YLDICWEKEGIDE KSS+LRK KSQIFTNS+A KLKLGDLKGAL+DT+FA+RDG++N KA
Sbjct: 241 YLDICWEKEGIDEEKSSALRKAKSQIFTNSAASKLKLGDLKGALVDTDFAIRDGENNAKA 300

Query: 301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346
           LFRQGQAYMALNDVDAA ESF+KAL+LEPND GIK+EL  A+KK++
Sbjct: 301 LFRQGQAYMALNDVDAAAESFKKALQLEPNDAGIKRELNAARKKIN 346

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438434|ref|XP_004136993.1| PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40-like [Cucumis sativus]

 Score =  625 bits (1613), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 292/346 (84%), Positives = 325/346 (93%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M R RCFLDISIG +LEGRI+VE+Y+DV+PKTAENFRALCTGEKGIGP+TGVPLH+KG  
Sbjct: 1   MGRIRCFLDISIGGDLEGRIVVELYDDVVPKTAENFRALCTGEKGIGPHTGVPLHFKGSC 60

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRVIKGFM+QGGDISAGDGTGGESIYG KF+DENFE+KHERKGMLSMAN+GPN+NGSQF
Sbjct: 61  FHRVIKGFMVQGGDISAGDGTGGESIYGEKFDDENFEVKHERKGMLSMANSGPNSNGSQF 120

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FITTTRT HLDGKHVVFG+V+KGMGVVRSIEHV TG+N CPIA+V I+DCGEIPEGADDG
Sbjct: 121 FITTTRTPHLDGKHVVFGKVLKGMGVVRSIEHVTTGENACPIAEVIISDCGEIPEGADDG 180

Query: 181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
           ISNFFNDGD++PDWP DL+Q+ ++L WW+ AVDS+KVFGNEHYKKQDYKMALRKYRKALR
Sbjct: 181 ISNFFNDGDTFPDWPTDLEQSSDDLEWWVKAVDSVKVFGNEHYKKQDYKMALRKYRKALR 240

Query: 241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300
           YLDICWEKEGIDE KSS LRKTKSQIFTNSSACKLKLGDLKGALLDT+FAMRDGDDNVKA
Sbjct: 241 YLDICWEKEGIDEEKSSYLRKTKSQIFTNSSACKLKLGDLKGALLDTDFAMRDGDDNVKA 300

Query: 301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346
           LFRQGQA+MALND+D+AVESF+KA  LEPND  IKKELA A+KK++
Sbjct: 301 LFRQGQAHMALNDIDSAVESFKKASDLEPNDAAIKKELAAARKKIA 346

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807868|ref|NP_001241932.1| uncharacterized protein LOC100804110 [Glycine max] gi|255644776|gb|ACU22890.1| unknown [Glycine max]

 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 293/346 (84%), Positives = 321/346 (92%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M R RCFLDISIG ELEGRI+VE+Y+DV+PKTAENFRALCTGEKGIG NTGVPLH+KG  
Sbjct: 1   MGRGRCFLDISIGEELEGRIVVELYDDVVPKTAENFRALCTGEKGIGSNTGVPLHFKGSC 60

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRVIKGFMIQGGDISAGDGTGGES+YGLKFEDENFELKHERKGMLSMAN+GP+TNGSQF
Sbjct: 61  FHRVIKGFMIQGGDISAGDGTGGESVYGLKFEDENFELKHERKGMLSMANSGPDTNGSQF 120

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FI+TTRTSHLDGKHVVFG+V+KGMGVVRS+EHV TGDND P  DV I DCGEIPEG DDG
Sbjct: 121 FISTTRTSHLDGKHVVFGKVVKGMGVVRSVEHVATGDNDRPTLDVKIVDCGEIPEGEDDG 180

Query: 181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
           ISNFF DGD+YPDWPADLD++PNEL WWM +VDSIK FGN++Y+KQDYKMALRKYRKALR
Sbjct: 181 ISNFFKDGDTYPDWPADLDESPNELEWWMKSVDSIKAFGNDYYRKQDYKMALRKYRKALR 240

Query: 241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300
           YLDICWEKEGIDE  SS LRKTKSQIFTNSSA KLKLGD+KGALLDTEFAMR+GD+N KA
Sbjct: 241 YLDICWEKEGIDEEISSGLRKTKSQIFTNSSASKLKLGDIKGALLDTEFAMREGDNNAKA 300

Query: 301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346
           LFRQGQAYMAL+D+DAAVESF+KAL LEPND GIKKELA A+KK++
Sbjct: 301 LFRQGQAYMALHDIDAAVESFKKALTLEPNDAGIKKELAAARKKIA 346

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123292|ref|XP_002330280.1| predicted protein [Populus trichocarpa] gi|222871315|gb|EEF08446.1| predicted protein [Populus trichocarpa]

 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 291/346 (84%), Positives = 319/346 (92%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M RPRCFLDISIG ELEGRI+VE+YNDV+PKTAENFRALCTGEKGIGPNTGVPLHYKG R
Sbjct: 1   MGRPRCFLDISIGGELEGRIVVELYNDVVPKTAENFRALCTGEKGIGPNTGVPLHYKGCR 60

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRVIKGFM+QGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF
Sbjct: 61  FHRVIKGFMVQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FI+TTR SHLDGKHVVFG+ +KG+GVVRSIEHV TGD +CP +DV I DCGEIPEGADDG
Sbjct: 121 FISTTRASHLDGKHVVFGKAVKGIGVVRSIEHVTTGDAECPTSDVMIVDCGEIPEGADDG 180

Query: 181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
             NFF DGD+YPDWPADL ++P+ELSWWMNAVDSIK  GNEH+KKQDYKMALRKYRKALR
Sbjct: 181 TCNFFKDGDAYPDWPADLYESPSELSWWMNAVDSIKASGNEHFKKQDYKMALRKYRKALR 240

Query: 241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300
           YLDICWEKEGIDE KSS+LRKTKSQ FTNS+A +LKLGDLKGAL+DT+ A+RD ++N KA
Sbjct: 241 YLDICWEKEGIDEEKSSALRKTKSQTFTNSAASRLKLGDLKGALVDTDLAIRDWENNAKA 300

Query: 301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346
           LFRQGQAY ALNDVDAA ESF+KAL+LEPND GIK+EL  A+KKV+
Sbjct: 301 LFRQGQAYKALNDVDAAAESFKKALQLEPNDAGIKRELNAARKKVN 346

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|355329950|dbj|BAL14274.1| cyclophilin 40 [Nicotiana tabacum]

 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 291/346 (84%), Positives = 322/346 (93%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M RPRC+LDISIG ELEGRI+VE+YNDV+PKTAENFRALCTGEKGIGPNTGVPLHYKGVR
Sbjct: 1   MGRPRCYLDISIGGELEGRIVVELYNDVVPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRVIK FM+QGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAG NTNGSQF
Sbjct: 61  FHRVIKSFMVQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGANTNGSQF 120

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FITTTRTSHLDGKHVVFG+VIKGMGVVRS+EHV TGDND P+ DV+I DCGEIP+GADDG
Sbjct: 121 FITTTRTSHLDGKHVVFGKVIKGMGVVRSMEHVTTGDNDFPMVDVSIADCGEIPQGADDG 180

Query: 181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
           I+NFF DGD YPDWPADLD   +++SWW+ A+++IK FGNE++KKQDYKMALRKYRKALR
Sbjct: 181 IANFFKDGDLYPDWPADLDNNTDDISWWVTALEAIKAFGNENFKKQDYKMALRKYRKALR 240

Query: 241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300
           YLDICWEKE IDE +S+ LRK KSQIFTNSSACKLKLGDLKGALLD +FAMRDG++N KA
Sbjct: 241 YLDICWEKEEIDEDRSAYLRKMKSQIFTNSSACKLKLGDLKGALLDADFAMRDGENNAKA 300

Query: 301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346
           LFRQGQA+MALND+DAAVESF KAL+LEPNDGGIK +LA AKKK++
Sbjct: 301 LFRQGQAHMALNDIDAAVESFMKALELEPNDGGIKNQLAAAKKKIA 346

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449517543|ref|XP_004165805.1| PREDICTED: LOW QUALITY PROTEIN: peptidyl-prolyl cis-trans isomerase CYP40-like [Cucumis sativus]

 Score =  623 bits (1607), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 291/346 (84%), Positives = 324/346 (93%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M R RCFLDISIG +LEGRI+VE+Y+DV+PKTAENFRALCTGEKGIGP+TGVPLH+KG  
Sbjct: 1   MGRIRCFLDISIGGDLEGRIVVELYDDVVPKTAENFRALCTGEKGIGPHTGVPLHFKGSC 60

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRVIKGFM+QGGDISAGDGTGGESIYG KF+DENFE+KHER GMLSMAN+GPN+NGSQF
Sbjct: 61  FHRVIKGFMVQGGDISAGDGTGGESIYGEKFDDENFEVKHERXGMLSMANSGPNSNGSQF 120

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FITTTRT HLDGKHVVFG+V+KGMGVVRSIEHV TG+N CPIA+V I+DCGEIPEGADDG
Sbjct: 121 FITTTRTPHLDGKHVVFGKVLKGMGVVRSIEHVTTGENACPIAEVIISDCGEIPEGADDG 180

Query: 181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
           ISNFFNDGD++PDWP DL+Q+ ++L WW+ AVDS+KVFGNEHYKKQDYKMALRKYRKALR
Sbjct: 181 ISNFFNDGDTFPDWPTDLEQSSDDLEWWVKAVDSVKVFGNEHYKKQDYKMALRKYRKALR 240

Query: 241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300
           YLDICWEKEGIDE KSS LRKTKSQIFTNSSACKLKLGDLKGALLDT+FAMRDGDDNVKA
Sbjct: 241 YLDICWEKEGIDEEKSSYLRKTKSQIFTNSSACKLKLGDLKGALLDTDFAMRDGDDNVKA 300

Query: 301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346
           LFRQGQA+MALND+D+AVESF+KA  LEPND  IKKELA A+KK++
Sbjct: 301 LFRQGQAHMALNDIDSAVESFKKASDLEPNDAAIKKELAAARKKIA 346

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081585|ref|XP_002306460.1| predicted protein [Populus trichocarpa] gi|222855909|gb|EEE93456.1| predicted protein [Populus trichocarpa]

 Score =  622 bits (1604), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 293/346 (84%), Positives = 317/346 (91%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           MA+PRC+LDISIG ELEGRI+VE+Y DV+PKTAENFRALCTGEKGIGPNTGVPLHYKG R
Sbjct: 1   MAKPRCYLDISIGGELEGRIVVELYKDVVPKTAENFRALCTGEKGIGPNTGVPLHYKGGR 60

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRV++GFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMAN GP+TNGSQF
Sbjct: 61  FHRVVRGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANMGPDTNGSQF 120

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FITTTRTSHLDGKHVVFG+V KGMGVVRSIEHV+T   D P  +  I DCGEIPEG DDG
Sbjct: 121 FITTTRTSHLDGKHVVFGKVTKGMGVVRSIEHVVTEGGDSPSQETVIVDCGEIPEGEDDG 180

Query: 181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
           IS+FF DGD+YPDWPADLD  P+E+SWWM AVDSIK FGNE YKKQD KMALRKYRKALR
Sbjct: 181 ISDFFKDGDTYPDWPADLDMKPDEISWWMKAVDSIKAFGNEQYKKQDCKMALRKYRKALR 240

Query: 241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300
           YLD+CWEKE IDE KSSSLRKTKSQIFTNSSACKLKLGD+KGALLDT+FAMRDG+DN KA
Sbjct: 241 YLDVCWEKEDIDEEKSSSLRKTKSQIFTNSSACKLKLGDIKGALLDTDFAMRDGEDNAKA 300

Query: 301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346
            FRQGQAYMALND+DAAV SF+KAL LEPNDGGIKKELA A+KK++
Sbjct: 301 FFRQGQAYMALNDIDAAVASFKKALDLEPNDGGIKKELASARKKIA 346

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	347
TAIR|locus:2044596	361	SQN "SQUINT" [Arabidopsis thal	0.997	0.958	0.751	1.1e-142
ZFIN|ZDB-GENE-040625-34	371	ppid "peptidylprolyl isomerase	0.979	0.916	0.453	1e-77
RGD|1303174	370	Ppid "peptidylprolyl isomerase	0.976	0.916	0.461	1.5e-76
UNIPROTKB|F1RTY6	370	PPID "Uncharacterized protein"	0.979	0.918	0.457	1.9e-76
MGI|MGI:1914988	370	Ppid "peptidylprolyl isomerase	0.976	0.916	0.459	3.9e-76
UNIPROTKB|P26882	370	PPID "Peptidyl-prolyl cis-tran	0.979	0.918	0.446	6.3e-76
UNIPROTKB|Q08752	370	PPID "Peptidyl-prolyl cis-tran	0.979	0.918	0.452	4.5e-75
UNIPROTKB|E2QTC7	372	PPID "Uncharacterized protein"	0.974	0.908	0.449	2.8e-73
UNIPROTKB|G4MYB7	376	MGG_08104 "Peptidyl-prolyl cis	0.976	0.901	0.463	3.6e-73
DICTYBASE|DDB_G0283663	354	ppiD "peptidylprolyl isomerase	0.942	0.923	0.466	4.1e-72

TAIR|locus:2044596 SQN "SQUINT" [Arabidopsis thaliana (taxid:3702)]

 Score = 1395 (496.1 bits), Expect = 1.1e-142, P = 1.1e-142
 Identities = 260/346 (75%), Positives = 285/346 (82%)

Query:     1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
             M R +CF+DISIG ELEGRI++E+Y+DV+PKTAENFR LCTGEKG+GPNTGVPLHYKG R
Sbjct:     1 MGRSKCFMDISIGGELEGRIVIELYDDVVPKTAENFRLLCTGEKGLGPNTGVPLHYKGNR 60

Query:    61 FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
             FHRVIKGFMIQ            ESIYGLKF+DENFELKHERKGMLSMAN+GPNTNGSQF
Sbjct:    61 FHRVIKGFMIQGGDISANDGTGGESIYGLKFDDENFELKHERKGMLSMANSGPNTNGSQF 120

Query:   121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
             FITTTRTSHLDGKHVVFGRV KGMGVVRSIEHV   +  CP  DV I DCGEIPEGADDG
Sbjct:   121 FITTTRTSHLDGKHVVFGRVTKGMGVVRSIEHVSIEEQSCPSQDVVIHDCGEIPEGADDG 180

Query:   181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
             I +FF DGD YPDWP DL+++P ELSWWM  VD +K  GNEH+KKQDYKMALRKYRKALR
Sbjct:   181 ICDFFKDGDVYPDWPIDLNESPAELSWWMETVDFVKAHGNEHFKKQDYKMALRKYRKALR 240

Query:   241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKA 300
             YLDICWEKEGIDE  S++LRKTKSQIFTNS+AC             TEFAMRD D+NVKA
Sbjct:   241 YLDICWEKEGIDEETSTALRKTKSQIFTNSAACKLKFGDAKGALLDTEFAMRDEDNNVKA 300

Query:   301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346
             LFRQGQAYMALN+VDAA ES EKAL+ EPND GIKKE A   KK++
Sbjct:   301 LFRQGQAYMALNNVDAAAESLEKALQFEPNDAGIKKEYAAVMKKIA 346

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0006457 "protein folding" evidence=IEA

GO:0010050 "vegetative phase change" evidence=IMP

GO:0010582 "floral meristem determinacy" evidence=IGI

GO:0005829 "cytosol" evidence=IDA

ZFIN|ZDB-GENE-040625-34 ppid "peptidylprolyl isomerase D" [Danio rerio (taxid:7955)]

 Score = 782 (280.3 bits), Expect = 1.0e-77, P = 1.0e-77
 Identities = 155/342 (45%), Positives = 210/342 (61%)

Query:     4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
             PR F D+ IG E  GR++ E++ DV+PKTAENFRALCTGEKG+G +TG PLH+KG  FHR
Sbjct:    16 PRVFFDVEIGAERVGRVVFELFADVVPKTAENFRALCTGEKGVGKSTGKPLHFKGCPFHR 75

Query:    64 VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
             +IK FMIQ            ESIYG KFEDENF  KH+R+G+LSMANAGPNTNGSQFFIT
Sbjct:    76 IIKSFMIQGGDFSNQNGTGGESIYGDKFEDENFHYKHDREGLLSMANAGPNTNGSQFFIT 135

Query:   124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGISN 183
             T  T HLDGKHVVFG+V+KGMGVV+ +E + T + D P+    I +CGE   G D  I+ 
Sbjct:   136 TVPTPHLDGKHVVFGQVLKGMGVVKMLEAMETKE-DNPVKPCVIAECGEHKAGDDWSIAL 194

Query:   184 FFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLD 243
                 GD+YPD+P D +    ++   ++  + +K  GN  +K Q+++ A++KY KALRYL+
Sbjct:   195 NDGSGDAYPDFPEDSEVDFKDVDKVLSVAEDLKNIGNNFFKAQNWQSAIKKYSKALRYLE 254

Query:   244 ICWEKEGIDEGKSSSLRKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFR 303
             +C      D+     L  T      N++AC              +  +     N KALFR
Sbjct:   255 MCGNIVD-DDSSQKKLEPTALSCILNTAACKLKLKLWQEAIESCDEVLELNQTNTKALFR 313

Query:   304 QGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV 345
             + QA+  L + + A+   +KA ++ P D  I  E+   K++V
Sbjct:   314 RAQAWQGLKEFNKAMVDLKKAHEIAPEDKAIGNEMNKVKQQV 355

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

RGD|1303174 Ppid "peptidylprolyl isomerase D" [Rattus norvegicus (taxid:10116)]

 Score = 771 (276.5 bits), Expect = 1.5e-76, P = 1.5e-76
 Identities = 158/342 (46%), Positives = 207/342 (60%)

Query:     4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
             PR F D+ IG E  GRI++E++ D++PKTAENFRALCTGEKG GP TG PLH+KG  FHR
Sbjct:    16 PRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGTGPTTGKPLHFKGCPFHR 75

Query:    64 VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
             +IK FMIQ            ESIYG KFEDENF  KH+R+G+LSMANAGPNTNGSQFFIT
Sbjct:    76 IIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFIT 135

Query:   124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGISN 183
             T  T HLDGKHVVFG+VIKG+GV R +E+V   + + P     I +CGE+ EG + GI  
Sbjct:   136 TVPTPHLDGKHVVFGQVIKGLGVARMLENVEV-NGEKPAKLCVIAECGELKEGDEWGIFP 194

Query:   184 FFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLD 243
                 GDS+PD+P D D    ++   +   + +K  GN  +K Q+++MA++KY K LRYLD
Sbjct:   195 KDGSGDSHPDFPEDADIDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYAKVLRYLD 254

Query:   244 ICWEKEGIDEGKSSSLRKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFR 303
                 K  I++   S L+        N  AC                A+     N KAL+R
Sbjct:   255 S--SKAVIEKADVSRLQPIALSCVLNIGACKLKMSNWQGAIDSCLEALEMDPSNTKALYR 312

Query:   304 QGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV 345
             + Q +  L + D A+   +KA ++ P D  I+ EL   K+ +
Sbjct:   313 KAQGWQGLKEYDQALADLKKAQEIAPGDKAIQAELLKVKQMI 354

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO;ISS

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISO;IDA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISO;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0005654 "nucleoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0006457 "protein folding" evidence=ISS

GO:0006461 "protein complex assembly" evidence=ISO;ISS

GO:0006915 "apoptotic process" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0008134 "transcription factor binding" evidence=ISO;ISS

GO:0015031 "protein transport" evidence=IEA

GO:0019899 "enzyme binding" evidence=IPI

GO:0030331 "estrogen receptor binding" evidence=ISS

GO:0030544 "Hsp70 protein binding" evidence=ISS

GO:0031072 "heat shock protein binding" evidence=ISO

GO:0034389 "lipid particle organization" evidence=ISO;ISS

GO:0042277 "peptide binding" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=ISO;ISS

GO:0043066 "negative regulation of apoptotic process" evidence=IMP

GO:0045070 "positive regulation of viral genome replication" evidence=ISO

GO:0045111 "intermediate filament cytoskeleton" evidence=ISO

GO:0050714 "positive regulation of protein secretion" evidence=ISO

GO:0051879 "Hsp90 protein binding" evidence=ISO;ISS

GO:0051881 "regulation of mitochondrial membrane potential" evidence=IMP

GO:0061077 "chaperone-mediated protein folding" evidence=ISO;ISS

GO:0071492 "cellular response to UV-A" evidence=ISO;ISS

UNIPROTKB|F1RTY6 PPID "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 770 (276.1 bits), Expect = 1.9e-76, P = 1.9e-76
 Identities = 158/345 (45%), Positives = 208/345 (60%)

Query:     2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
             + PR F D+ IG E  GRI++E++ D++PKTAENFRALCTGEKGIGP TG PLH+KG  F
Sbjct:    14 SNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPF 73

Query:    62 HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
             HR+IK FMIQ            ESIYG KFEDENF  KH+++G+LSMANAG NTNGSQFF
Sbjct:    74 HRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGCNTNGSQFF 133

Query:   122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHV-MTGDNDCPIADVTITDCGEIPEGADDG 180
             ITT  T HLDGKHVVFG+VIKGMGV R +E+V + G+    +    I +CGE+ EG D G
Sbjct:   134 ITTVPTPHLDGKHVVFGQVIKGMGVARILENVEVKGEKPAKLC--VIAECGELKEGDDWG 191

Query:   181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
             I      GDS+PD+P D D    ++   +   + +K  GN  +K Q ++MA++KY K LR
Sbjct:   192 IFPKDGSGDSHPDFPEDADIDLKDIDKILLITEDLKNIGNTFFKSQKWEMAIKKYTKVLR 251

Query:   241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKA 300
             Y+D    K   +E     L+        N  AC                A+     N KA
Sbjct:   252 YVD--GAKAVSEEADGLKLQPVALSCMLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKA 309

Query:   301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV 345
             L+R+ Q +  L + D A+ + +KA ++ P D  I+ EL   K+K+
Sbjct:   310 LYRRAQGWQGLKEYDQALAALKKAQEIAPEDKAIQAELLKVKQKI 354

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

MGI|MGI:1914988 Ppid "peptidylprolyl isomerase D (cyclophilin D)" [Mus musculus (taxid:10090)]

 Score = 767 (275.1 bits), Expect = 3.9e-76, P = 3.9e-76
 Identities = 157/342 (45%), Positives = 207/342 (60%)

Query:     4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
             PR F D+ IG E  GRI++E++ D++PKTAENFRALCTGEKG G  TG PLH+KG  FHR
Sbjct:    16 PRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGTGSTTGKPLHFKGCPFHR 75

Query:    64 VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
             +IK FMIQ            ESIYG KFEDENF  KH+R+G+LSMANAGPNTNGSQFFIT
Sbjct:    76 IIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFIT 135

Query:   124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGISN 183
             T  T HLDGKHVVFG+VIKG+GV R++E+V   + + P     I +CGE+ EG D GI  
Sbjct:   136 TVPTPHLDGKHVVFGQVIKGLGVARTLENVEV-NGEKPAKLCVIAECGELKEGDDWGIFP 194

Query:   184 FFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLD 243
                 GDS+PD+P D D    ++   +   + +K  GN  +K Q+++MA++KY K LRY+D
Sbjct:   195 KDGSGDSHPDFPEDADIDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYAKVLRYVD 254

Query:   244 ICWEKEGIDEGKSSSLRKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFR 303
                 K  I++   S L+        N  AC                A+     N KAL+R
Sbjct:   255 S--SKAVIEKADRSRLQPIALSCVLNIGACKLKMSNWQGAIDSCLEALEMDPSNTKALYR 312

Query:   304 QGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV 345
             + Q +  L + D A+   +KA ++ P D  I+ EL   K+ +
Sbjct:   313 KAQGWQGLKEYDQALADLKKAQEIAPGDKAIQAELLKVKQMI 354

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISO

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISO;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005528 "FK506 binding" evidence=TAS

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006457 "protein folding" evidence=IEA

GO:0006461 "protein complex assembly" evidence=ISO

GO:0008134 "transcription factor binding" evidence=ISO

GO:0016853 "isomerase activity" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=ISO

GO:0034389 "lipid particle organization" evidence=ISO

GO:0042277 "peptide binding" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=ISO

GO:0045070 "positive regulation of viral genome replication" evidence=ISO

GO:0050714 "positive regulation of protein secretion" evidence=ISO

GO:0051879 "Hsp90 protein binding" evidence=ISO

GO:0061077 "chaperone-mediated protein folding" evidence=ISO

GO:0071492 "cellular response to UV-A" evidence=ISO

UNIPROTKB|P26882 PPID "Peptidyl-prolyl cis-trans isomerase D" [Bos taurus (taxid:9913)]

 Score = 765 (274.4 bits), Expect = 6.3e-76, P = 6.3e-76
 Identities = 154/345 (44%), Positives = 209/345 (60%)

Query:     2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
             + PR F D+ IG E  GRI++E++ D++PKTAENFRALCTGEKGIGP TG PLH+KG  F
Sbjct:    14 SNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPF 73

Query:    62 HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
             HR+IK FMIQ            ESIYG KFEDENF  KH+++G+LSMANAG NTNGSQFF
Sbjct:    74 HRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFF 133

Query:   122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHV-MTGDNDCPIADVTITDCGEIPEGADDG 180
             ITT  T HLDGKHVVFG+VIKGMGV + +E+V + G+    +    I +CGE+ EG D G
Sbjct:   134 ITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAKLC--VIAECGELKEGDDWG 191

Query:   181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
             I      GDS+PD+P D D    ++   +   + +K  GN  +K Q+++MA++KY K LR
Sbjct:   192 IFPKDGSGDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLR 251

Query:   241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKA 300
             Y++    +   ++   + L+        N  AC                A+     N KA
Sbjct:   252 YVE--GSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKA 309

Query:   301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV 345
             L+R+ Q +  L + D A+   +KA ++ P D  I+ EL   K+K+
Sbjct:   310 LYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI 354

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0034389 "lipid particle organization" evidence=ISS

GO:0071492 "cellular response to UV-A" evidence=ISS

GO:0043065 "positive regulation of apoptotic process" evidence=ISS

GO:0006461 "protein complex assembly" evidence=ISS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0051879 "Hsp90 protein binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005730 "nucleolus" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0061077 "chaperone-mediated protein folding" evidence=ISS

GO:0008134 "transcription factor binding" evidence=ISS

GO:0006457 "protein folding" evidence=IDA

GO:0030544 "Hsp70 protein binding" evidence=IDA

GO:0030331 "estrogen receptor binding" evidence=IDA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0042277 "peptide binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

UNIPROTKB|Q08752 PPID "Peptidyl-prolyl cis-trans isomerase D" [Homo sapiens (taxid:9606)]

 Score = 757 (271.5 bits), Expect = 4.5e-75, P = 4.5e-75
 Identities = 156/345 (45%), Positives = 207/345 (60%)

Query:     2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
             + PR F D+ IG E  GRI++E++ D++PKTAENFRALCTGEKGIG  TG PLH+KG  F
Sbjct:    14 SNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGHTTGKPLHFKGCPF 73

Query:    62 HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
             HR+IK FMIQ            ESIYG KFEDENF  KH+R+G+LSMANAG NTNGSQFF
Sbjct:    74 HRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGRNTNGSQFF 133

Query:   122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHV-MTGDNDCPIADVTITDCGEIPEGADDG 180
             ITT  T HLDGKHVVFG+VIKG+GV R +E+V + G+    +    I +CGE+ EG D G
Sbjct:   134 ITTVPTPHLDGKHVVFGQVIKGIGVARILENVEVKGEKPAKLC--VIAECGELKEGDDGG 191

Query:   181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
             I      GDS+PD+P D D    ++   +   + +K  GN  +K Q+++MA++KY + LR
Sbjct:   192 IFPKDGSGDSHPDFPEDADIDLKDVDKILLITEDLKNIGNTFFKSQNWEMAIKKYAEVLR 251

Query:   241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKA 300
             Y+D    K  I+    + L+        N  AC                A+     N KA
Sbjct:   252 YVDS--SKAVIETADRAKLQPIALSCVLNIGACKLKMSNWQGAIDSCLEALELDPSNTKA 309

Query:   301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV 345
             L+R+ Q +  L + D A+   +KA  + P D  I+ EL   K+K+
Sbjct:   310 LYRRAQGWQGLKEYDQALADLKKAQGIAPEDKAIQAELLKVKQKI 354

GO:0006915 "apoptotic process" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0016018 "cyclosporin A binding" evidence=TAS

GO:0031072 "heat shock protein binding" evidence=IPI

GO:0030331 "estrogen receptor binding" evidence=ISS

GO:0030544 "Hsp70 protein binding" evidence=ISS

GO:0006457 "protein folding" evidence=ISS

GO:0008134 "transcription factor binding" evidence=IDA

GO:0061077 "chaperone-mediated protein folding" evidence=IDA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0051879 "Hsp90 protein binding" evidence=IDA

GO:0006461 "protein complex assembly" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0045070 "positive regulation of viral genome replication" evidence=IMP

GO:0019076 "viral release from host cell" evidence=TAS

GO:0050714 "positive regulation of protein secretion" evidence=IMP

GO:0043065 "positive regulation of apoptotic process" evidence=IMP

GO:0071492 "cellular response to UV-A" evidence=IMP

GO:0034389 "lipid particle organization" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0045111 "intermediate filament cytoskeleton" evidence=IDA

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IDA

UNIPROTKB|E2QTC7 PPID "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 740 (265.6 bits), Expect = 2.8e-73, P = 2.8e-73
 Identities = 155/345 (44%), Positives = 208/345 (60%)

Query:     4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
             PR F D++I  E  GRI++E++ D++PKTAENFRALCTGEKGIGP TG PLH+KG  FHR
Sbjct:    16 PRVFFDVAIAGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHR 75

Query:    64 VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
             +IK FMIQ            ESIYG KFEDENF  KH+++G+LSMANAG NTNGSQFFIT
Sbjct:    76 IIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFYYKHDQEGLLSMANAGCNTNGSQFFIT 135

Query:   124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHV-MTGDNDCPIADVTITDCGEIPEGADDGIS 182
             T  T HLDGKHVVFG+VIKGMGV R +E+V + G+   P     I +CGE+ EG D GI 
Sbjct:   136 TVPTPHLDGKHVVFGQVIKGMGVARILENVEVKGEK--PTKLCVIAECGELKEGDDWGIF 193

Query:   183 NFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYL 242
                  GD++PD+P D D    +++  +   + +K  GN  +K Q+++MA++KY K LRY+
Sbjct:   194 PKDGSGDNHPDFPEDADIDLKDVNKILLITEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV 253

Query:   243 DICWEKEGIDEGKSSSLRKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALF 302
             +    K   ++     L+        N  AC                A+     N KAL+
Sbjct:   254 ES--SKAVAEQADRLKLQPMALSCVLNIGACKLKMSNWQGAVDSCLEALEIDPSNTKALY 311

Query:   303 RQGQAYMALNDVDAAV--ESFEKALKLEPNDGGIKKELAVAKKKV 345
             R+ Q +  L + D A+     +KA ++ P D  I+ EL   K+K+
Sbjct:   312 RRAQGWQGLKEYDQALLKADLKKAQEIAPEDKAIQAELLKVKQKI 356

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

UNIPROTKB|G4MYB7 MGG_08104 "Peptidyl-prolyl cis-trans isomerase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 739 (265.2 bits), Expect = 3.6e-73, P = 3.6e-73
 Identities = 163/352 (46%), Positives = 209/352 (59%)

Query:     2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
             ARPR F DISI  +  GRI+ E+++DV+PKTAENFRALCTGEKGIG  +G PLHYKG  F
Sbjct:    10 ARPRVFFDISIDDKPAGRIVFELFSDVVPKTAENFRALCTGEKGIG-KSGKPLHYKGSSF 68

Query:    62 HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
             HRVIK FMIQ            ESIYG KF+DENFEL H+R  +LSMANAGP TNGSQFF
Sbjct:    69 HRVIKQFMIQGGDFTAGNGTGGESIYGEKFDDENFELIHDRPFLLSMANAGPGTNGSQFF 128

Query:   122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGA--DD 179
             +TT  T HLD KHVVFG+V+ G  VVR +E++ T   D P+   TI DCGE+P  A   D
Sbjct:   129 VTTVPTPHLDKKHVVFGQVLSGKSVVRQVENLTTHAGDKPVKSATIADCGELPADAVVGD 188

Query:   180 GISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKAL 239
                     GD Y D+P D +  P +++         K +GN  +K  D+  AL KY+K L
Sbjct:   189 AAKEADKYGDKYEDFPEDDEGGPLDVARVTTIASDCKTYGNSAFKVGDHATALTKYQKGL 248

Query:   240 RYLDICWEKEGIDEGKSSSLRKTKSQI-FT-NSSACXXXXXXXX----XXXXXTEFAMRD 293
             RYL+   E E   E   + +++  + + FT N++A                  +  A++ 
Sbjct:   249 RYLNE--EPERDQENIPADVKEKLAALRFTLNNNAALMNLKLESWEDAKNAASSALAVKS 306

Query:   294 GDD--NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK 343
               D    KAL+R+G AY+ L D DAA++  E+A KL P D  + KEL   KK
Sbjct:   307 ASDADRAKALYRRGLAYIRLKDEDAAIKDLEEAKKLAPADAAVAKELEQVKK 358

GO:0005575 "cellular_component" evidence=ND

DICTYBASE|DDB_G0283663 ppiD "peptidylprolyl isomerase" [Dictyostelium discoideum (taxid:44689)]

 Score = 729 (261.7 bits), Expect = 4.1e-72, P = 4.1e-72
 Identities = 158/339 (46%), Positives = 202/339 (59%)

Query:     5 RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRV 64
             R + DI IG    GRI++E++ D  PKTAENFRALCTGEKGIG N G PL YKG  FHRV
Sbjct:     7 RVYFDIEIGGNKVGRIVMELFFDKTPKTAENFRALCTGEKGIGKN-GKPLSYKGSGFHRV 65

Query:    65 IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
             IK FMIQ            ESIYG KF+DENF  KH + G+LSMAN+GP TNGSQFFITT
Sbjct:    66 IKQFMIQGGDFTAGNGTGGESIYGEKFDDENFIAKHTKAGLLSMANSGPGTNGSQFFITT 125

Query:   125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGISNF 184
               T HLD KHVVFG+VIKGM VVR IE   TG ND PI D  I DCGE+ EG DDG+   
Sbjct:   126 ISTPHLDNKHVVFGKVIKGMSVVREIESQPTGANDKPIKDCIIMDCGELKEGEDDGVPEK 185

Query:   185 FNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDI 244
               D D + D+P D +   NE +  +   ++IK  GN+++K+     A+ KY KALRYLD 
Sbjct:   186 TGD-DKWEDYPQDDNVEGNEAN--LKVGEAIKNIGNDYFKQGKSLEAIAKYNKALRYLDC 242

Query:   245 CWEKEGIDEGKSSSLRKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQ 304
             C     ID      L+  ++  + N S C              + A+    +++KALFR+
Sbjct:   243 C---SNID-----GLKNVQTICYNNMSQCYLKEKKGSNALVAAKKALELSPNDIKALFRK 294

Query:   305 GQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK 343
              +A   + + D A++ F+K ++ +  +   K EL   KK
Sbjct:   295 AKALSLMEEYDEAIKDFQKIIETDSENKDAKLELERIKK 333

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016853 "isomerase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C566	CYP40_ARATH	5, ., 2, ., 1, ., 8	0.8150	0.9971	0.9584	yes	no
Q6BXZ7	PPID_DEBHA	5, ., 2, ., 1, ., 8	0.4565	0.9740	0.9135	yes	no
Q75A33	PPID_ASHGO	5, ., 2, ., 1, ., 8	0.4245	0.9682	0.9105	yes	no
Q6CBP4	PPID_YARLI	5, ., 2, ., 1, ., 8	0.4475	0.9942	0.9400	yes	no
Q4HXF6	PPID_GIBZE	5, ., 2, ., 1, ., 8	0.4927	0.9654	0.9005	yes	no
Q4WIF3	PPID_ASPFU	5, ., 2, ., 1, ., 8	0.4779	0.9682	0.8912	yes	no
P26882	PPID_BOVIN	5, ., 2, ., 1, ., 8	0.4883	0.9827	0.9216	yes	no
P53691	PPID_YEAST	5, ., 2, ., 1, ., 8	0.4416	0.9855	0.9218	yes	no
Q9CR16	PPID_MOUSE	5, ., 2, ., 1, ., 8	0.4970	0.9769	0.9162	yes	no
Q6FNU6	PPID_CANGA	5, ., 2, ., 1, ., 8	0.4338	0.9538	0.8921	yes	no
Q2U0E0	PPID_ASPOR	5, ., 2, ., 1, ., 8	0.4589	0.9769	0.9137	yes	no
Q6CL78	PPID_KLULA	5, ., 2, ., 1, ., 8	0.4358	0.9798	0.9139	yes	no
Q11004	PPID_SCHPO	5, ., 2, ., 1, ., 8	0.4228	0.9337	0.9101	yes	no
Q6DGG0	PPID_RAT	5, ., 2, ., 1, ., 8	0.5	0.9769	0.9162	yes	no
Q5B4E7	PPID_EMENI	5, ., 2, ., 1, ., 8	0.4887	0.9740	0.9086	yes	no
P0CP80	PPID_CRYNJ	5, ., 2, ., 1, ., 8	0.4227	0.9827	0.9093	yes	no
P0C1I1	PPID_RHIO9	5, ., 2, ., 1, ., 8	0.5114	0.9538	0.9093	N/A	no
Q08752	PPID_HUMAN	5, ., 2, ., 1, ., 8	0.4912	0.9827	0.9216	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.2.1	0.983
4th Layer	5.2.1.8	0.979

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00036534001 RecName- Full=Peptidyl-prolyl cis-trans isomerase; EC=5.2.1.8; (361 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	347
cd01926	164	cd01926, cyclophilin_ABH_like, cyclophilin_ABH_lik	2e-99
PTZ00060	183	PTZ00060, PTZ00060, cyclophilin; Provisional	1e-81
PLN03149	186	PLN03149, PLN03149, peptidyl-prolyl isomerase H (c	4e-71
cd00317	146	cd00317, cyclophilin, cyclophilin: cyclophilin-typ	4e-64
pfam00160	144	pfam00160, Pro_isomerase, Cyclophilin type peptidy	3e-59
COG0652	158	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase	4e-57
cd01927	148	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclo	3e-56
cd01928	153	cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3	3e-52
cd01923	159	cd01923, cyclophilin_RING, cyclophilin_RING: cyclo	3e-49
cd01922	146	cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCY	4e-48
PTZ00221	249	PTZ00221, PTZ00221, cyclophilin; Provisional	8e-38
cd01925	171	cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeC	1e-35
cd01921	166	cd01921, cyclophilin_RRM, cyclophilin_RRM: cycloph	6e-28
cd01920	155	cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP	8e-22
PRK10791	164	PRK10791, PRK10791, peptidyl-prolyl cis-trans isom	1e-14
PRK10903	190	PRK10903, PRK10903, peptidyl-prolyl cis-trans isom	2e-14
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	8e-13
cd01924	176	cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40	2e-10
pfam07719	34	pfam07719, TPR_2, Tetratricopeptide repeat	7e-08
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	1e-07
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	2e-07
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	2e-07
pfam13181	34	pfam13181, TPR_8, Tetratricopeptide repeat	2e-07
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-06
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	2e-06
pfam13414	69	pfam13414, TPR_11, TPR repeat	9e-06
pfam13414	69	pfam13414, TPR_11, TPR repeat	1e-05
pfam13428	44	pfam13428, TPR_14, Tetratricopeptide repeat	8e-05
pfam13174	33	pfam13174, TPR_6, Tetratricopeptide repeat	1e-04
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	2e-04
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	2e-04
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	5e-04
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	7e-04
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	0.001
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	0.002
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.002
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.004
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.004

>gnl|CDD|238907 cd01926, cyclophilin_ABH_like, cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain

 Score =  290 bits (744), Expect = 2e-99
 Identities = 111/168 (66%), Positives = 130/168 (77%), Gaps = 4/168 (2%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P+ F DI+IG E  GRI++E++ DV+PKTAENFRALCTGEKG G   G P  YKG  FHR
Sbjct: 1   PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKG---GKPFGYKGSTFHR 57

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           VI  FMIQGGD + G+GTGG+SIYG KF DENF+LKH   G+LSMANAGPNTNGSQFFIT
Sbjct: 58  VIPDFMIQGGDFTRGNGTGGKSIYGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFIT 117

Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCG 171
           T +T  LDGKHVVFG+V++GM VV+ IE+V +G N  P   V I DCG
Sbjct: 118 TVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSG-NGKPKKKVVIADCG 164

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the splicesome. Length = 164

>gnl|CDD|240249 PTZ00060, PTZ00060, cyclophilin; Provisional

 Score =  245 bits (628), Expect = 1e-81
 Identities = 106/173 (61%), Positives = 126/173 (72%), Gaps = 3/173 (1%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
             RP+ F DISI     GRI+ E+++DV PKTAENFRALC G+K      G  LHYKG  
Sbjct: 13  SKRPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSS--GKNLHYKGSI 70

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I  FM QGGDI+  +GTGGESIYG KF DENF+LKH++ G+LSMANAGPNTNGSQF
Sbjct: 71  FHRIIPQFMCQGGDITNHNGTGGESIYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQF 130

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FITT     LDGKHVVFG+VI+GM VVR++E   T  +  P   V +TDCGE+
Sbjct: 131 FITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGT-QSGYPKKPVVVTDCGEL 182

Length = 183

>gnl|CDD|178694 PLN03149, PLN03149, peptidyl-prolyl isomerase H (cyclophilin H); Provisional

 Score =  219 bits (559), Expect = 4e-71
 Identities = 100/171 (58%), Positives = 118/171 (69%), Gaps = 4/171 (2%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P  F D++IG    GRI +E++ D+ PKTAENFR  CTGE       G+P  YKG +FHR
Sbjct: 19  PVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEF---RKAGLPQGYKGCQFHR 75

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           VIK FMIQGGD   GDGTG  SIYG KFEDENF  KH   G+LSMAN+GPNTNG QFFIT
Sbjct: 76  VIKDFMIQGGDFLKGDGTGCVSIYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFIT 135

Query: 124 TTRTSHLDGKHVVFGRVI-KGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
             +   LD KHVVFGRV+  G+ VVR IE+V TG N+ P     I++CGE+
Sbjct: 136 CAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVISECGEM 186

Length = 186

>gnl|CDD|238194 cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases

 Score =  199 bits (509), Expect = 4e-64
 Identities = 90/164 (54%), Positives = 102/164 (62%), Gaps = 19/164 (11%)

Query: 7   FLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIK 66
            LD + G     RI++E+Y D  PKT ENF +L  G             Y G  FHRVI 
Sbjct: 1   TLDTTKG-----RIVIELYGDEAPKTVENFLSLARGG-----------FYDGTTFHRVIP 44

Query: 67  GFMIQGGDISAGDGTGGESIYGLKFEDENFELK-HERKGMLSMANAGPNTNGSQFFITTT 125
           GFMIQGGD +   G G  S  G KF DENF LK H R+G LSMANAGPNTNGSQFFITT 
Sbjct: 45  GFMIQGGDPTGTGGGG--SGPGYKFPDENFPLKYHHRRGTLSMANAGPNTNGSQFFITTA 102

Query: 126 RTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITD 169
            T HLDGKH VFG+V++GM VV  IE   T +N  PI  VTI+D
Sbjct: 103 PTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTISD 146

This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP, whose isomerization or chaperoning activities may play a role in RNA splicing. . Length = 146

>gnl|CDD|215759 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

 Score =  187 bits (477), Expect = 3e-59
 Identities = 78/164 (47%), Positives = 94/164 (57%), Gaps = 20/164 (12%)

Query: 7   FLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIK 66
           FLDI+      GRI++E++ D  PKT ENF +LC  +KG          Y G  FHRVI 
Sbjct: 1   FLDITTN---LGRIVIELFGDEAPKTVENFLSLC--KKG---------FYDGTIFHRVIP 46

Query: 67  GFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTR 126
           GFMIQGGD +     G  SI      DE       ++G LSMA +GPN+ GSQFFIT   
Sbjct: 47  GFMIQGGDPTGPGTGGKRSI-----PDEFVSKLKHKRGTLSMARSGPNSAGSQFFITLGD 101

Query: 127 TSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDC 170
             HLDG + VFGRV++GM VV  IE V   D D P+ DV IT C
Sbjct: 102 APHLDGGYTVFGRVVEGMDVVEKIEKV-ETDGDRPLKDVKITSC 144

The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyze peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function. Length = 144

>gnl|CDD|223725 COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]

 Score =  182 bits (464), Expect = 4e-57
 Identities = 75/159 (47%), Positives = 88/159 (55%), Gaps = 21/159 (13%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G I +E+Y D  PKT  NF  L                Y G  FHRVI GFMIQGGD + 
Sbjct: 9   GDITIELYPDKAPKTVANFLQLVK-----------EGFYDGTIFHRVIPGFMIQGGDPTG 57

Query: 78  GDGTGGESIYGLKFEDENFELKHER--KGMLSMANAG-PNTNGSQFFITTTRTSHLDGKH 134
           GDGTGG       F+DENF L  +R  +G LSMA AG PN+NGSQFFIT      LDGK+
Sbjct: 58  GDGTGGPGP---PFKDENFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKY 114

Query: 135 VVFGRVIKGMGVVRSIEHVMTGD----NDCPIADVTITD 169
            VFG+V++GM VV  I++  T D     D P   V I  
Sbjct: 115 TVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKILS 153

Length = 158

>gnl|CDD|238908 cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain

 Score =  179 bits (457), Expect = 3e-56
 Identities = 84/151 (55%), Positives = 97/151 (64%), Gaps = 13/151 (8%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G I + ++ +  PKT ENF        G         +Y    FHRVIKGFMIQ GD   
Sbjct: 7   GDIHIRLFPEEAPKTVENFTTHA--RNG---------YYNNTIFHRVIKGFMIQTGD-PT 54

Query: 78  GDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           GDGTGGESI+G +FEDE +  LKH+R   LSMANAGPNTNGSQFFITT  T  LD KH V
Sbjct: 55  GDGTGGESIWGKEFEDEFSPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTV 114

Query: 137 FGRVIKGMGVVRSIEHVMTGDNDCPIADVTI 167
           FGRV+KGM VV+ IE+V T  ND P  D+ I
Sbjct: 115 FGRVVKGMDVVQRIENVKTDKNDRPYEDIKI 145

This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known. Length = 148

>gnl|CDD|238909 cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3_like

 Score =  169 bits (430), Expect = 3e-52
 Identities = 74/153 (48%), Positives = 94/153 (61%), Gaps = 13/153 (8%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G I +E++ D  PK  ENF ALC              +Y G  FHR IKGFM+Q GD   
Sbjct: 10  GDIKIELFCDDCPKACENFLALCASG-----------YYNGCIFHRNIKGFMVQTGD-PT 57

Query: 78  GDGTGGESIYGLKFEDENFE-LKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           G G GGESI+G KFEDE  E LKH+ +G++SMAN GPNTNGSQFFIT  +  HLDGK+ V
Sbjct: 58  GTGKGGESIWGKKFEDEFRETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTV 117

Query: 137 FGRVIKGMGVVRSIEHVMTGDNDCPIADVTITD 169
           FG+VI G   + ++E +       P+ ++ I D
Sbjct: 118 FGKVIDGFETLDTLEKLPVDKKYRPLEEIRIKD 150

Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known. Length = 153

>gnl|CDD|238904 cd01923, cyclophilin_RING, cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain

 Score =  162 bits (411), Expect = 3e-49
 Identities = 74/153 (48%), Positives = 96/153 (62%), Gaps = 13/153 (8%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G + +E++ D  PK  ENF  LC  +KG         +Y G  FHR I+ FMIQGGD + 
Sbjct: 9   GDLNLELHCDKAPKACENFIKLC--KKG---------YYDGTIFHRSIRNFMIQGGDPT- 56

Query: 78  GDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           G G GGESI+G  F+DE    L H+ +G+LSMAN+GPNTNGSQFFIT     HLDGKH V
Sbjct: 57  GTGRGGESIWGKPFKDEFKPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTV 116

Query: 137 FGRVIKGMGVVRSIEHVMTGDNDCPIADVTITD 169
           FGRV+ G+  + ++E+V     D P  ++ I D
Sbjct: 117 FGRVVGGLETLEAMENVPDPGTDRPKEEIKIED 149

This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination. Length = 159

>gnl|CDD|238903 cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2

 Score =  158 bits (402), Expect = 4e-48
 Identities = 82/151 (54%), Positives = 96/151 (63%), Gaps = 14/151 (9%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G I +E+Y +  PKT +NF  L    +G         +Y G  FHR+IK FMIQGGD   
Sbjct: 7   GEITLELYWNHAPKTCKNFYELAK--RG---------YYNGTIFHRLIKDFMIQGGD-PT 54

Query: 78  GDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           G G GG SIYG KFEDE + ELKH   G+LSMANAGPNTNGSQFFIT   T  LDGKH +
Sbjct: 55  GTGRGGASIYGKKFEDEIHPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTI 114

Query: 137 FGRVIKGMGVVRSIEHVMTGDNDCPIADVTI 167
           FGRV KGM V+ ++  V T   D PI +V I
Sbjct: 115 FGRVSKGMKVIENMVEVQT-QTDRPIDEVKI 144

These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling. Length = 146

>gnl|CDD|140248 PTZ00221, PTZ00221, cyclophilin; Provisional

 Score =  135 bits (341), Expect = 8e-38
 Identities = 66/169 (39%), Positives = 95/169 (56%), Gaps = 7/169 (4%)

Query: 5   RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRV 64
           R FLDISIG  L GR++ E++ DV+P+T ENFRAL TG  GI  NTGV L Y     H V
Sbjct: 54  RAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHV 113

Query: 65  IK--GFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFI 122
            +    ++ G   S    + G  I      DE +  +H  +G+L+M + GP+T+GS F I
Sbjct: 114 DRNNNIIVLGELDSFNVSSTGTPI-----ADEGYRHRHTERGLLTMISEGPHTSGSVFGI 168

Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCG 171
           T   +  LD K VVFG+ +  + ++  +E +   D   P+  VT++ CG
Sbjct: 169 TLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVGRPLLPVTVSFCG 217

Length = 249

>gnl|CDD|238906 cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16

 Score =  127 bits (320), Expect = 1e-35
 Identities = 55/124 (44%), Positives = 75/124 (60%), Gaps = 13/124 (10%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G I +E+++   PK   NF  LC              +Y    FHRV+ GF+IQGGD + 
Sbjct: 15  GDIDIELWSKEAPKACRNFIQLCLEG-----------YYDNTIFHRVVPGFIIQGGDPT- 62

Query: 78  GDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           G GTGGESIYG  F+DE +  L+  R+G++ MANAG ++NGSQFF T  +   L+ KH +
Sbjct: 63  GTGTGGESIYGEPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTL 122

Query: 137 FGRV 140
           FG+V
Sbjct: 123 FGKV 126

C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding. Length = 171

>gnl|CDD|238902 cd01921, cyclophilin_RRM, cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)

 Score =  106 bits (267), Expect = 6e-28
 Identities = 60/161 (37%), Positives = 83/161 (51%), Gaps = 21/161 (13%)

Query: 17  EGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDIS 76
            G ++++++ D  P    NF  LC  +           +Y    F+ V K F+ Q GD +
Sbjct: 6   LGDLVIDLFTDECPLACLNFLKLCKLK-----------YYNFCLFYNVQKDFIAQTGDPT 54

Query: 77  AGDGTGGESIYGLK-------FEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTR-T 127
            G G GGESIY          FE E    LKH +KG +SM NAG N NGSQF+IT     
Sbjct: 55  -GTGAGGESIYSQLYGRQARFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENL 113

Query: 128 SHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTIT 168
            +LDGKH VFG+V++G  V+  I   +  D+  P+ D+ I 
Sbjct: 114 DYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDIRIK 154

This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis. Length = 166

>gnl|CDD|238901 cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E

 Score = 89.8 bits (223), Expect = 8e-22
 Identities = 56/169 (33%), Positives = 70/169 (41%), Gaps = 38/169 (22%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGG---- 73
           G I+VE+Y+D  P T ENF A     KG          Y    FHRVI GF+IQGG    
Sbjct: 7   GDIVVELYDDKAPITVENFLAYV--RKG---------FYDNTIFHRVISGFVIQGGGFTP 55

Query: 74  ---DISAGDGTGGESIYGLKFEDENFELKHERKGMLSMA-NAGPNTNGSQFFITTTRTSH 129
                        E+  GL             +G ++MA    P++  SQFFI     + 
Sbjct: 56  DLAQKETLKPIKNEAGNGLS----------NTRGTIAMARTNAPDSATSQFFINLKDNAS 105

Query: 130 LD-----GKHVVFGRVIKGMGVVRSIEHVMTGDN----DCPIADVTITD 169
           LD       + VFG V +GM VV  I  V T       D P+ DV I  
Sbjct: 106 LDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDVIIES 154

coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding. Length = 155

>gnl|CDD|182734 PRK10791, PRK10791, peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional

 Score = 70.6 bits (173), Expect = 1e-14
 Identities = 54/171 (31%), Positives = 76/171 (44%), Gaps = 41/171 (23%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G I+++ ++D  P+T +NF   C   +G   NT          FHRVI GFMIQGG    
Sbjct: 9   GDIVIKTFDDKAPETVKNFLDYCR--EGFYNNT---------IFHRVINGFMIQGGGFEP 57

Query: 78  GDGTGGESIYGLKFEDENFELKHE-------RKGMLSMANAG-PNTNGSQFFITTT---- 125
                     G+K +     +K+E        +G L+MA    P++  +QFFI       
Sbjct: 58  ----------GMKQKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDF 107

Query: 126 ---RTSHLDG-KHVVFGRVIKGMGVVRSIEHVMTGDN----DCPIADVTIT 168
                  L G  + VF  V++GM VV  I+ V TG +    D P  DV I 
Sbjct: 108 LNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVIIE 158

Length = 164

>gnl|CDD|182824 PRK10903, PRK10903, peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional

 Score = 70.6 bits (173), Expect = 2e-14
 Identities = 54/168 (32%), Positives = 77/168 (45%), Gaps = 24/168 (14%)

Query: 17  EGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDIS 76
            G I +E+ +   P + +NF            N+G    Y    FHRVI GFMIQGG  +
Sbjct: 37  AGNIELELNSQKAPVSVKNFVDYV--------NSG---FYNNTTFHRVIPGFMIQGGGFT 85

Query: 77  AGDGTGGESIYGLKFEDENFELKHERKGMLSMA-NAGPNTNGSQFFITTTRTSHLD-GK- 133
                  +    +K E +N  L++ R G ++MA  A  ++  SQFFI     + LD G+ 
Sbjct: 86  E-QMQQKKPNPPIKNEADN-GLRNTR-GTIAMARTADKDSATSQFFINVADNAFLDHGQR 142

Query: 134 ---HVVFGRVIKGMGVVRSIEHVMTGD----NDCPIADVTITDCGEIP 174
              + VFG+V+KGM V   I  V T D     + P   V I     +P
Sbjct: 143 DFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAKVLP 190

Length = 190

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 63.6 bits (155), Expect = 8e-13
 Identities = 40/112 (35%), Positives = 53/112 (47%), Gaps = 18/112 (16%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           GN +YK  DY  AL  Y KAL                   L    +  + N +A   KLG
Sbjct: 7   GNLYYKLGDYDEALEYYEKAL------------------ELDPDNADAYYNLAAAYYKLG 48

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN 330
             + AL D E A+    DN KA +  G AY  L   + A+E++EKAL+L+PN
Sbjct: 49  KYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|238905 cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40

 Score = 59.0 bits (143), Expect = 2e-10
 Identities = 51/176 (28%), Positives = 72/176 (40%), Gaps = 56/176 (31%)

Query: 19  RIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGD---- 74
            I+++ YN   P TA NF  L   E+G          Y G+ FHRV  GF++Q GD    
Sbjct: 10  TIVLDGYN--APVTAGNFVDLV--ERGF---------YDGMEFHRVEGGFVVQTGDPQGK 56

Query: 75  -------------------ISAGDGTGGESIYGLKFE-----DENFELKHERKGMLSMAN 110
                                 G     + +YG   E     DE   L     G ++MA 
Sbjct: 57  NPGFPDPETGKSRTIPLEIKPEGQ---KQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMAR 113

Query: 111 A--GPNTNGSQFFI-------TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGD 157
               PN+  SQFF        T +R + LDG++ VFG V  G+ ++R ++    GD
Sbjct: 114 TEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDILRELK---VGD 166

Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation. Length = 176

>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat

 Score = 47.5 bits (114), Expect = 7e-08
 Identities = 16/34 (47%), Positives = 25/34 (73%)

Query: 298 VKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
            +AL+  G AY  L D + A+E++EKAL+L+PN+
Sbjct: 1   AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34

This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 47.0 bits (113), Expect = 1e-07
 Identities = 17/34 (50%), Positives = 23/34 (67%)

Query: 298 VKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
            KAL+  G AY+ L   D A+E +EKAL+L PN+
Sbjct: 1   AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 46.7 bits (112), Expect = 2e-07
 Identities = 17/34 (50%), Positives = 25/34 (73%)

Query: 298 VKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
            +AL+  G AY+ L D D A+E +EKAL+L+PN+
Sbjct: 1   AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 46.9 bits (112), Expect = 2e-07
 Identities = 16/57 (28%), Positives = 24/57 (42%)

Query: 275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
           L+ GD   AL   E A+       +AL   G+A +    +  A      AL  +P+D
Sbjct: 8   LRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADPDD 64

Length = 65

>gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat

 Score = 45.9 bits (110), Expect = 2e-07
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 298 VKALFRQGQAYMALNDVDAAVESFEKALKLEPN 330
            +A +  GQ Y+ L D + A E +EKAL+L+PN
Sbjct: 1   ARAYYLLGQIYLQLGDYEEAKEYYEKALELDPN 33

Length = 34

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 26/80 (32%), Positives = 37/80 (46%)

Query: 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKA 324
           +   N      KLGD   AL   E A+    DN  A +    AY  L   + A+E +EKA
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 325 LKLEPNDGGIKKELAVAKKK 344
           L+L+P++      L +A  K
Sbjct: 61  LELDPDNAKAYYNLGLAYYK 80

Length = 100

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 48.3 bits (113), Expect = 2e-06
 Identities = 29/135 (21%), Positives = 49/135 (36%), Gaps = 17/135 (12%)

Query: 196 ADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGK 255
              ++            +++   G        Y+ AL    KAL+               
Sbjct: 151 ELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNP------------ 198

Query: 256 SSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVD 315
                   ++   N     LKLG  + AL   E A+    DN +AL+      + L   +
Sbjct: 199 -----DDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYE 253

Query: 316 AAVESFEKALKLEPN 330
            A+E+ EKAL+L+P+
Sbjct: 254 EALEALEKALELDPD 268

Length = 291

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 42.7 bits (101), Expect = 9e-06
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALN-DVDAAVESFEKALKLEP 329
            KLGD   A+   E A+    DN +A +    AY+ L  D + A+E  EKAL+L+P
Sbjct: 14  FKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKALELDP 69

Length = 69

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 21/49 (42%), Positives = 30/49 (61%)

Query: 296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344
           DN +AL   G A   L D D A+E++EKAL+L+P++      LA+A  K
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLK 49

Length = 69

>gnl|CDD|222121 pfam13428, TPR_14, Tetratricopeptide repeat

 Score = 39.1 bits (91), Expect = 8e-05
 Identities = 15/44 (34%), Positives = 22/44 (50%)

Query: 298 VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341
             AL    +A +AL D+D A+    +AL L+P+D      LA  
Sbjct: 1   PAALLALARALLALGDLDEALALLRRALALDPDDPEALLLLARL 44

Length = 44

>gnl|CDD|221956 pfam13174, TPR_6, Tetratricopeptide repeat

 Score = 38.2 bits (90), Expect = 1e-04
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 299 KALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
            AL++   AY+ L D D A E+ E+ LK  P+ 
Sbjct: 1   DALYKLALAYLKLGDTDEAKEALERLLKRYPDS 33

Length = 33

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 10/40 (25%), Positives = 14/40 (35%)

Query: 302 FRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341
               +A +   D D A+ + E AL   P        L  A
Sbjct: 1   LALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEA 40

Length = 65

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 22/69 (31%), Positives = 38/69 (55%)

Query: 274 KLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG 333
           +L+LG +  A+     A+    D+  AL   G+AY+AL D + A E   KA +L+P +  
Sbjct: 339 QLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAA 398

Query: 334 IKKELAVAK 342
            + +L ++K
Sbjct: 399 ARTQLGISK 407

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 23/65 (35%), Positives = 32/65 (49%)

Query: 275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI 334
           L  G LK AL     A     D+ +A    G+A +A  D++ AV SF+K L L+P+    
Sbjct: 578 LGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALA 637

Query: 335 KKELA 339
              LA
Sbjct: 638 LLLLA 642

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 22/94 (23%), Positives = 32/94 (34%), Gaps = 14/94 (14%)

Query: 264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEK 323
               +      L LGD + A      A     +N  A  + G + ++  D   A+   E 
Sbjct: 363 PAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLET 422

Query: 324 ALKLEPN--------------DGGIKKELAVAKK 343
           A +L+P                G   K LA AKK
Sbjct: 423 AAQLDPELGRADLLLILSYLRSGQFDKALAAAKK 456

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 40.7 bits (95), Expect = 0.001
 Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 19/98 (19%)

Query: 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSAC 273
            +K  GN+ Y+ +D+  A++ Y KA+     C               K     ++N +AC
Sbjct: 129 KLKEKGNKAYRNKDFNKAIKLYSKAI----EC---------------KPDPVYYSNRAAC 169

Query: 274 KLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMAL 311
              LGD +  + DT  A+    D  KAL R+  AY  L
Sbjct: 170 HNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 39.4 bits (90), Expect = 0.002
 Identities = 30/116 (25%), Positives = 45/116 (38%), Gaps = 13/116 (11%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
                       AL KY +AL  L+     +   +   + L                +LG
Sbjct: 95  AEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLAL----------GALYELG 144

Query: 279 DLKGALLDTEFAMR---DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
           D + AL   E A+    + ++  +AL   G    AL   + A+E  EKALKL P+D
Sbjct: 145 DYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD 200

Length = 291

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 25/124 (20%), Positives = 51/124 (41%), Gaps = 19/124 (15%)

Query: 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKL 275
           ++ G+ + +++DY  A++ YRKAL+                   R   SQ         L
Sbjct: 707 ELEGDLYLRQKDYPAAIQAYRKALK-------------------RAPSSQNAIKLHRALL 747

Query: 276 KLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIK 335
             G+   A+   E  ++   ++        + Y+A  D D A++ ++  +K  P++  + 
Sbjct: 748 ASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVL 807

Query: 336 KELA 339
             LA
Sbjct: 808 NNLA 811

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 38.9 bits (91), Expect = 0.004
 Identities = 19/65 (29%), Positives = 31/65 (47%)

Query: 278 GDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKE 337
              K A++  + A++   ++ +A F  G+ Y+AL D  AA +   KAL L      +   
Sbjct: 36  NKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPL 95

Query: 338 LAVAK 342
           LA A 
Sbjct: 96  LARAY 100

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 38.9 bits (91), Expect = 0.004
 Identities = 34/136 (25%), Positives = 52/136 (38%), Gaps = 45/136 (33%)

Query: 230 MALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289
           +AL  + KA  YL     K    + ++++ R T+  I       KL  GD   A+ D E 
Sbjct: 374 LALGDFEKAAEYL----AKATELDPENAAAR-TQLGIS------KLSQGDPSEAIADLET 422

Query: 290 A------------------MRDGDDN-----VKALFRQ-----------GQAYMALNDVD 315
           A                  +R G  +      K L ++           G  Y+   D+ 
Sbjct: 423 AAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLA 482

Query: 316 AAVESFEKALKLEPND 331
            A E+FEKAL +EP+ 
Sbjct: 483 KAREAFEKALSIEPDF 498

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	347
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	100.0
KOG0880	217	consensus Peptidyl-prolyl cis-trans isomerase [Pos	100.0
KOG0879	177	consensus U-snRNP-associated cyclophilin type pept	100.0
KOG0111	298	consensus Cyclophilin-type peptidyl-prolyl cis-tra	100.0
PTZ00221	249	cyclophilin; Provisional	100.0
KOG0881	164	consensus Cyclophilin type peptidyl-prolyl cis-tra	100.0
PLN03149	186	peptidyl-prolyl isomerase H (cyclophilin H); Provi	100.0
cd01926	164	cyclophilin_ABH_like cyclophilin_ABH_like: Cycloph	100.0
PTZ00060	183	cyclophilin; Provisional	100.0
COG0652	158	PpiB Peptidyl-prolyl cis-trans isomerase (rotamase	100.0
cd01923	159	cyclophilin_RING cyclophilin_RING: cyclophilin-typ	100.0
cd01928	153	Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Pro	100.0
cd01927	148	cyclophilin_WD40 cyclophilin_WD40: cyclophilin-typ	100.0
cd01921	166	cyclophilin_RRM cyclophilin_RRM: cyclophilin-type	100.0
cd01922	146	cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: c	100.0
KOG0883	518	consensus Cyclophilin type, U box-containing pepti	100.0
KOG0865	167	consensus Cyclophilin type peptidyl-prolyl cis-tra	100.0
KOG0884	161	consensus Similar to cyclophilin-type peptidyl-pro	100.0
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	100.0
cd01925	171	cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like:	100.0
PRK10903	190	peptidyl-prolyl cis-trans isomerase A (rotamase A)	100.0
PRK10791	164	peptidyl-prolyl cis-trans isomerase B (rotamase B)	100.0
cd01920	155	cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyc	100.0
KOG0885	439	consensus Peptidyl-prolyl cis-trans isomerase [Pos	100.0
cd00317	146	cyclophilin cyclophilin: cyclophilin-type peptidyl	100.0
cd01924	176	cyclophilin_TLP40_like cyclophilin_TLP40_like: cyc	100.0
PF00160	155	Pro_isomerase: Cyclophilin type peptidyl-prolyl ci	100.0
KOG0415	479	consensus Predicted peptidyl prolyl cis-trans isom	100.0
KOG0553	304	consensus TPR repeat-containing protein [General f	99.87
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.86
KOG4234	271	consensus TPR repeat-containing protein [General f	99.78
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	99.74
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.68
PRK15359	144	type III secretion system chaperone protein SscB;	99.65
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.64
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.64
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.6
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.54
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.53
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.52
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.49
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.45
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.44
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	99.44
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.41
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.41
PRK11189	296	lipoprotein NlpI; Provisional	99.41
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.38
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	99.38
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.36
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.33
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.3
PRK15359	144	type III secretion system chaperone protein SscB;	99.25
KOG1126	638	consensus DNA-binding cell division cycle control	99.25
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.23
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.23
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.22
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.22
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.21
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.2
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.2
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.19
PRK15331	165	chaperone protein SicA; Provisional	99.19
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.19
PRK12370	553	invasion protein regulator; Provisional	99.18
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.17
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.17
PRK12370	553	invasion protein regulator; Provisional	99.17
KOG1126	638	consensus DNA-binding cell division cycle control	99.16
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.16
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.16
KOG1125	579	consensus TPR repeat-containing protein [General f	99.14
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.13
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.13
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	99.11
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.11
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.1
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.1
PRK11189	296	lipoprotein NlpI; Provisional	99.08
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.07
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.07
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.06
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.06
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.05
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.04
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.04
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.02
PRK10803	263	tol-pal system protein YbgF; Provisional	99.01
PF13371	73	TPR_9: Tetratricopeptide repeat	99.01
KOG4555	175	consensus TPR repeat-containing protein [Function	99.01
PLN02789	320	farnesyltranstransferase	99.0
KOG2003	840	consensus TPR repeat-containing protein [General f	98.97
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.97
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.92
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.91
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.9
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.9
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.9
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.9
PF13512	142	TPR_18: Tetratricopeptide repeat	98.9
KOG2076	895	consensus RNA polymerase III transcription factor	98.89
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.88
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.88
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.87
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.86
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.85
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.84
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.84
PLN02789	320	farnesyltranstransferase	98.83
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.82
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.79
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.78
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.78
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.78
KOG0553	304	consensus TPR repeat-containing protein [General f	98.78
KOG1129	478	consensus TPR repeat-containing protein [General f	98.77
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.75
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.75
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.75
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.75
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.73
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.71
PF12688	120	TPR_5: Tetratrico peptide repeat	98.71
KOG1310	758	consensus WD40 repeat protein [General function pr	98.69
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.68
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.68
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.68
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.67
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.67
PRK14574	822	hmsH outer membrane protein; Provisional	98.67
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.66
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.65
PF13371	73	TPR_9: Tetratricopeptide repeat	98.65
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.64
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.62
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.61
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.6
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.59
KOG1125	579	consensus TPR repeat-containing protein [General f	98.55
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.55
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.53
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.53
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.49
PRK14574	822	hmsH outer membrane protein; Provisional	98.48
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.47
KOG2076	895	consensus RNA polymerase III transcription factor	98.47
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.4
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.37
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.37
PRK11906	458	transcriptional regulator; Provisional	98.36
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.35
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.35
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.33
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.33
PF12688	120	TPR_5: Tetratrico peptide repeat	98.32
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.32
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.28
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.27
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.26
PRK11906	458	transcriptional regulator; Provisional	98.25
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.25
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.22
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.21
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.21
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.19
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.19
PF13428	44	TPR_14: Tetratricopeptide repeat	98.19
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.19
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.18
PF13431	34	TPR_17: Tetratricopeptide repeat	98.18
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.17
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.16
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.16
KOG1129	478	consensus TPR repeat-containing protein [General f	98.15
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.14
PRK10803	263	tol-pal system protein YbgF; Provisional	98.13
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.12
PF13428	44	TPR_14: Tetratricopeptide repeat	98.12
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	98.12
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.11
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.1
PRK15331	165	chaperone protein SicA; Provisional	98.09
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.06
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.05
KOG2003	840	consensus TPR repeat-containing protein [General f	98.04
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.03
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.03
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.03
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.02
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.02
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.0
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	98.0
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.99
KOG4555	175	consensus TPR repeat-containing protein [Function	97.98
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.98
PF13512	142	TPR_18: Tetratricopeptide repeat	97.96
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.96
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.94
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.92
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.87
PRK10941	269	hypothetical protein; Provisional	97.86
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.84
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.82
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.81
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.8
KOG4234	271	consensus TPR repeat-containing protein [General f	97.78
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.77
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.76
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	97.75
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.71
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.7
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.62
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.61
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.55
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.54
KOG4814	872	consensus Uncharacterized conserved protein [Funct	97.53
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.5
PF13431	34	TPR_17: Tetratricopeptide repeat	97.5
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	97.49
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.48
KOG3364	149	consensus Membrane protein involved in organellar	97.45
KOG1586	288	consensus Protein required for fusion of vesicles	97.41
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.4
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.37
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.37
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.34
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.3
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.3
KOG1941	518	consensus Acetylcholine receptor-associated protei	97.26
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	97.25
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.24
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.23
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.21
KOG2471	696	consensus TPR repeat-containing protein [General f	97.19
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	97.18
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.18
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.15
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.13
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.12
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.11
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.1
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.08
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.07
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.03
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.96
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	96.95
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.95
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	96.93
COG2912	269	Uncharacterized conserved protein [Function unknow	96.91
COG0457	291	NrfG FOG: TPR repeat [General function prediction	96.9
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.9
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.83
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	96.79
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.75
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.75
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	96.74
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.73
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.66
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.64
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.55
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.54
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.54
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.53
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.5
KOG2471	696	consensus TPR repeat-containing protein [General f	96.4
PRK04841	903	transcriptional regulator MalT; Provisional	96.35
KOG1586	288	consensus Protein required for fusion of vesicles	96.31
PRK04841	903	transcriptional regulator MalT; Provisional	96.27
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.24
TIGR03268	503	methan_mark_3 putative methanogenesis marker prote	96.23
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.21
KOG1585	308	consensus Protein required for fusion of vesicles	96.14
PRK00969	508	hypothetical protein; Provisional	96.11
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.08
KOG1915	677	consensus Cell cycle control protein (crooked neck	96.08
TIGR03268	503	methan_mark_3 putative methanogenesis marker prote	96.06
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	96.06
PLN03077	857	Protein ECB2; Provisional	95.99
KOG2610	491	consensus Uncharacterized conserved protein [Funct	95.97
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.95
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	95.91
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	95.84
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.77
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.71
PLN03218	1060	maturation of RBCL 1; Provisional	95.66
COG4070	512	Predicted peptidyl-prolyl cis-trans isomerase (rot	95.62
PLN03218	1060	maturation of RBCL 1; Provisional	95.61
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	95.59
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	95.58
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.55
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	95.53
KOG2610	491	consensus Uncharacterized conserved protein [Funct	95.51
COG3629	280	DnrI DNA-binding transcriptional activator of the	95.49
PRK00969	508	hypothetical protein; Provisional	95.48
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	95.46
PRK10941	269	hypothetical protein; Provisional	95.44
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	95.39
KOG1915	677	consensus Cell cycle control protein (crooked neck	95.26
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	95.25
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.23
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	95.13
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.08
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	95.01
PLN03077	857	Protein ECB2; Provisional	94.99
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	94.82
COG3947	361	Response regulator containing CheY-like receiver a	94.77
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	94.7
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	94.59
COG4070	512	Predicted peptidyl-prolyl cis-trans isomerase (rot	94.47
KOG1585	308	consensus Protein required for fusion of vesicles	94.21
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	94.1
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	94.08
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	94.04
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	94.02
KOG2300	629	consensus Uncharacterized conserved protein [Funct	94.0
COG5191	435	Uncharacterized conserved protein, contains HAT (H	93.97
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	93.96
KOG3364	149	consensus Membrane protein involved in organellar	93.83
PHA02537	230	M terminase endonuclease subunit; Provisional	93.78
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	93.66
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	93.54
COG3898	531	Uncharacterized membrane-bound protein [Function u	93.52
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	93.48
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	93.23
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	93.18
KOG4814	872	consensus Uncharacterized conserved protein [Funct	93.04
PF06957	422	COPI_C: Coatomer (COPI) alpha subunit C-terminus;	93.02
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	92.88
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	92.81
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	92.72
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	92.67
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	92.54
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	92.17
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	92.07
KOG4507	886	consensus Uncharacterized conserved protein, conta	92.05
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	91.95
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	91.82
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	91.79
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	91.78
KOG2422	665	consensus Uncharacterized conserved protein [Funct	91.66
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	91.26
KOG1550	552	consensus Extracellular protein SEL-1 and related	90.76
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	90.7
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	90.66
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	90.58
KOG1310	758	consensus WD40 repeat protein [General function pr	90.55
COG3898	531	Uncharacterized membrane-bound protein [Function u	90.52
PF04212	69	MIT: MIT (microtubule interacting and transport) d	90.21
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	90.02
KOG1550	552	consensus Extracellular protein SEL-1 and related	89.94
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	89.81
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	89.68
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	89.65
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	89.52
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	89.29
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	89.27
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	89.25
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	89.22
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	88.89
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	88.85
COG2912	269	Uncharacterized conserved protein [Function unknow	88.16
COG4455	273	ImpE Protein of avirulence locus involved in tempe	88.07
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	88.06
PF12903	147	DUF3830: Protein of unknown function (DUF3830); In	87.82
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	87.07
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	87.06
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	87.0
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	86.98
KOG2581	493	consensus 26S proteasome regulatory complex, subun	86.65
KOG2047	835	consensus mRNA splicing factor [RNA processing and	86.64
cd02679	79	MIT_spastin MIT: domain contained within Microtubu	86.51
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	86.39
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	86.31
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	86.26
KOG2300	629	consensus Uncharacterized conserved protein [Funct	86.25
COG3118	304	Thioredoxin domain-containing protein [Posttransla	86.19
cd02677	75	MIT_SNX15 MIT: domain contained within Microtubule	85.92
KOG2047	835	consensus mRNA splicing factor [RNA processing and	85.68
cd02684	75	MIT_2 MIT: domain contained within Microtubule Int	85.61
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	85.43
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	85.35
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	85.03
smart00745	77	MIT Microtubule Interacting and Trafficking molecu	84.96
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	84.43
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	84.34
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	84.3
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	83.92
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	83.84
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	83.48
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	83.41
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	83.24
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	83.08
cd02656	75	MIT MIT: domain contained within Microtubule Inter	82.97
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	82.92
KOG0529	421	consensus Protein geranylgeranyltransferase type I	82.69
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	82.56
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	82.46
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	82.1
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	80.86
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	80.14
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	80.07

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.3e-83  Score=559.42  Aligned_cols=343  Identities=55%  Similarity=0.835  Sum_probs=316.4

Q ss_pred             CCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCC
Q 019054            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG   82 (347)
Q Consensus         3 ~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~   82 (347)
                      ||+|||||+|+|.+.||||||||.|+||+||+||+.||+|.++.+..+|++|+|+|+.|||||++|||||||++.++|+|
T Consensus         8 ~pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGtG   87 (372)
T KOG0546|consen    8 NPRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGTG   87 (372)
T ss_pred             CceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCCC
Confidence            89999999999999999999999999999999999999999997778999999999999999999999999999999999


Q ss_pred             CCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCccc
Q 019054           83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI  162 (347)
Q Consensus        83 ~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P~  162 (347)
                      |.||||.+|+||||.++|+++++|||||.||||||||||||+.++|||||+|+|||+|+.|++||+.|+++.++....|.
T Consensus        88 GeSIYG~~FdDEnF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~skP~  167 (372)
T KOG0546|consen   88 GESIYGEKFDDENFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEESKPL  167 (372)
T ss_pred             cccccccccccccceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccccCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988999


Q ss_pred             cceEeccceecCCC----CCCCCCCcCCCCCCCCCCCCCCCCC-cchhHHHHhhHHHHHHcCccccchhhHHHHHHHHHH
Q 019054          163 ADVTITDCGEIPEG----ADDGISNFFNDGDSYPDWPADLDQT-PNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRK  237 (347)
Q Consensus       163 ~~v~I~~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~  237 (347)
                      .+|+|.+||++...    ..+.....++.++.++++|.++..+ ..+..+.++.+...++.|+..|++++|..|...|.+
T Consensus       168 ~dV~I~dCGel~~~~~~~~~~~a~~~~~sgd~~~d~p~~~~~~~~~~~~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k  247 (372)
T KOG0546|consen  168 ADVVISDCGELVKKSKVKEDAGASEPDETGDSYEDYPKDDRSWDDKDFDKALEREEKKKNIGNKEFKKQRYREALAKYRK  247 (372)
T ss_pred             cceEecccccccccccccccccCCCCCCCCCcccccccccccccccccchhhhhhhhhhccchhhhhhccHhHHHHHHHH
Confidence            99999999999877    5677777899999999999776553 456667788889999999999999999999999999


Q ss_pred             HHHHhhhccccCCCChhh--hhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHH
Q 019054          238 ALRYLDICWEKEGIDEGK--SSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVD  315 (347)
Q Consensus       238 al~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~  315 (347)
                      ++++..+ .+........  ..........++.|++.|-++++.+..|+..+..+++.+++..+++|++++++..+.+++
T Consensus       248 ~~r~~~~-~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~  326 (372)
T KOG0546|consen  248 ALRYLSE-QSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYD  326 (372)
T ss_pred             Hhhhhcc-cccccccccccccccccccccccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchh
Confidence            9999886 3322222221  244666777889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          316 AAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       316 ~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      +|+++++.+....|++.++...+..+++.++
T Consensus       327 ~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~  357 (372)
T KOG0546|consen  327 EALEDLKKAKQKAPNDKAIEEELENVRQKKK  357 (372)
T ss_pred             hhHHHHHHhhccCcchHHHHHHHHHhhhHHH
Confidence            9999999999999999999999988877653

>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6e-57  Score=360.28  Aligned_cols=167  Identities=63%  Similarity=1.065  Sum_probs=159.7

Q ss_pred             CeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhc-cCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCC
Q 019054            4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCT-GEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG   82 (347)
Q Consensus         4 ~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~-~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~   82 (347)
                      ..|||||.++++..|||+|.||+..+|+||+||++||. +.++.        .|.|+.||||||+|||||||++.++|+|
T Consensus        40 ~kV~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~--------gY~gS~FhRVi~nfmIQGGd~t~g~gtG  111 (217)
T KOG0880|consen   40 HKVYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGY--------GYKGSKFHRVIPNFMIQGGDFTKGDGTG  111 (217)
T ss_pred             eEEEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCc--------ccCCceeeeeecCceeecCccccCCCCC
Confidence            37999999999999999999999999999999999999 55544        4999999999999999999999999999


Q ss_pred             CCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCccc
Q 019054           83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI  162 (347)
Q Consensus        83 ~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P~  162 (347)
                      +.||||.+|+||||.++|+++|.|||||.|||+||||||||+...|||||+|+|||+|++||+++.+|+.+.+++.++|.
T Consensus       112 g~SIyG~~F~DENf~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~dkP~  191 (217)
T KOG0880|consen  112 GKSIYGEKFPDENFKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTDERDKPL  191 (217)
T ss_pred             CeEeecCCCCCccceeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhcccCCCCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceEeccceecCCCCC
Q 019054          163 ADVTITDCGEIPEGAD  178 (347)
Q Consensus       163 ~~v~I~~~g~~~~~~~  178 (347)
                      .++.|.+|+.++....
T Consensus       192 e~v~I~~~g~l~~~~~  207 (217)
T KOG0880|consen  192 EDVVIANCGELPVEYL  207 (217)
T ss_pred             ccEEEeecCcccccch
Confidence            9999999998865443

>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.5e-56  Score=333.97  Aligned_cols=167  Identities=58%  Similarity=0.995  Sum_probs=162.2

Q ss_pred             CCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCC
Q 019054            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG   82 (347)
Q Consensus         3 ~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~   82 (347)
                      ||.|||||+|+|.+.|||.||||.|.+|+|++||++.|+|+-   ..+|+|+.|++++|||||++|||||||+..++|+|
T Consensus        10 nPvVF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~---r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGtG   86 (177)
T KOG0879|consen   10 NPVVFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEY---RKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGTG   86 (177)
T ss_pred             CCeEEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhccccc---ccCCccccccccchHHHhhhheeccCceecCCCce
Confidence            899999999999999999999999999999999999999873   24689999999999999999999999999999999


Q ss_pred             CCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCccc
Q 019054           83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI  162 (347)
Q Consensus        83 ~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P~  162 (347)
                      ..||||.+|+||||.++|.++|+|||||+|+++||.|||||..++.+||++|+|||+|++|+.++++|+++++..+.+|.
T Consensus        87 ~~sIy~~~F~DENFtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~NnkPK  166 (177)
T KOG0879|consen   87 VASIYGSTFPDENFTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNNKPK  166 (177)
T ss_pred             EEEEcCCCCCCcceeeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceEecccee
Q 019054          163 ADVTITDCGE  172 (347)
Q Consensus       163 ~~v~I~~~g~  172 (347)
                      .+|+|..||.
T Consensus       167 l~v~i~qCGe  176 (177)
T KOG0879|consen  167 LPVVIVQCGE  176 (177)
T ss_pred             CcEEEeeccc
Confidence            9999999985

>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.9e-50  Score=326.54  Aligned_cols=164  Identities=59%  Similarity=1.015  Sum_probs=159.7

Q ss_pred             CCCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCC
Q 019054            1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDG   80 (347)
Q Consensus         1 ~~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~   80 (347)
                      |.||.||+++.|++...|||+++|..|..|+|++||+.||.+.+++|        |+|++||||||.||+||||++.++|
T Consensus       134 ~~~pqv~~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfg--------ykgssfhriip~fmcqggdftn~ng  205 (298)
T KOG0111|consen  134 MENPQVYHDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFG--------YKGSSFHRIIPKFMCQGGDFTNGNG  205 (298)
T ss_pred             hhChHhhhheeecccccceEEEeecccCChhhhhhhhhhccccCccC--------ccccchhhhhhhhhccCCccccCCC
Confidence            67999999999999999999999999999999999999999999886        9999999999999999999999999


Q ss_pred             CCCCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCc
Q 019054           81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC  160 (347)
Q Consensus        81 ~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~  160 (347)
                      +||.||||.+|.||||.|+|+.+|+|||||+|+|+|||||||++....|||++|+|||.|++|++|++++++..+.+ +.
T Consensus       206 tggksiygkkfddenf~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgsks-gk  284 (298)
T KOG0111|consen  206 TGGKSIYGKKFDDENFTLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGSKS-GK  284 (298)
T ss_pred             CCCcccccccccccceeeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhccCCC-CC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988876 89


Q ss_pred             cccceEeccceec
Q 019054          161 PIADVTITDCGEI  173 (347)
Q Consensus       161 P~~~v~I~~~g~~  173 (347)
                      |...|.|..||.+
T Consensus       285 p~qkv~i~~cge~  297 (298)
T KOG0111|consen  285 PQQKVKIVECGEI  297 (298)
T ss_pred             cceEEEEEecccc
Confidence            9999999999875

>PTZ00221 cyclophilin; Provisional

Probab=100.00  E-value=2.2e-48  Score=333.74  Aligned_cols=174  Identities=38%  Similarity=0.616  Sum_probs=159.8

Q ss_pred             CCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecC-ceEEeccCCCCCC
Q 019054            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKG-FMIQGGDISAGDG   80 (347)
Q Consensus         2 ~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~-~~iq~G~~~~~~~   80 (347)
                      .+|+|||||+|+|.+.|+|+||||.+.||+||+||++||++.++.+...|+.++|+||.||||+++ |+|||||+..   
T Consensus        51 ~~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~---  127 (249)
T PTZ00221         51 NSCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS---  127 (249)
T ss_pred             CCCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC---
Confidence            379999999999999999999999999999999999999988765544566678999999999986 8999999863   


Q ss_pred             CCCCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCc
Q 019054           81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC  160 (347)
Q Consensus        81 ~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~  160 (347)
                       ++.++||.+|+||++.++|+++|+|+|++.|||++|||||||+.+.|+||++|+|||+|++||++|++|++++++..++
T Consensus       128 -~g~s~~G~~f~dE~~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~~gr  206 (249)
T PTZ00221        128 -FNVSSTGTPIADEGYRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVGR  206 (249)
T ss_pred             -CCccCCCCcccCccccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCCCCC
Confidence             2457789999999999999999999999999999999999999999999999999999999999999999999887899


Q ss_pred             cccceEeccceecCCCCCC
Q 019054          161 PIADVTITDCGEIPEGADD  179 (347)
Q Consensus       161 P~~~v~I~~~g~~~~~~~~  179 (347)
                      |..+|+|.+|+++..+.+.
T Consensus       207 P~~~V~I~~Cgvl~~~~p~  225 (249)
T PTZ00221        207 PLLPVTVSFCGALTGEKPP  225 (249)
T ss_pred             CCCCeEEEECeEecCCCCC
Confidence            9999999999999876554

>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.4e-49  Score=294.18  Aligned_cols=152  Identities=54%  Similarity=0.866  Sum_probs=145.4

Q ss_pred             CCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCC
Q 019054            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG   82 (347)
Q Consensus         3 ~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~   82 (347)
                      -|.|+++++     .|.|++|||-..||+||.||..|++.+           ||+|+.|||||++|||||||++ ++|.|
T Consensus         9 ~~~V~LeTs-----mG~i~~ElY~kHaP~TC~NF~eLarrg-----------YYn~v~FHRii~DFmiQGGDPT-GTGRG   71 (164)
T KOG0881|consen    9 PPNVTLETS-----MGKITLELYWKHAPRTCQNFAELARRG-----------YYNGVIFHRIIKDFMIQGGDPT-GTGRG   71 (164)
T ss_pred             CCeEEEeec-----ccceehhhhhhcCcHHHHHHHHHHhcc-----------cccceeeeehhhhheeecCCCC-CCCCC
Confidence            368999998     699999999999999999999999998           9999999999999999999998 89999


Q ss_pred             CCcccCCCCCCCcc-ccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCcc
Q 019054           83 GESIYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (347)
Q Consensus        83 ~~~~~~~~~~~e~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P  161 (347)
                      |.||||.+|+||-. +++|...|+|||||.|||+|||||||||.+.+||||+|++||||..||+|+..+..+.++..++|
T Consensus        72 GaSIYG~kF~DEi~~dLkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~DRP  151 (164)
T KOG0881|consen   72 GASIYGDKFEDEIHSDLKHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSDRP  151 (164)
T ss_pred             ccccccchhhhhhhhhhcccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCCCC
Confidence            99999999999955 89999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceEeccce
Q 019054          162 IADVTITDCG  171 (347)
Q Consensus       162 ~~~v~I~~~g  171 (347)
                      ..++.|....
T Consensus       152 i~~~kIika~  161 (164)
T KOG0881|consen  152 IDEVKIIKAY  161 (164)
T ss_pred             ccceeeEeee
Confidence            9999987654

>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional

Probab=100.00  E-value=9.6e-48  Score=320.98  Aligned_cols=170  Identities=59%  Similarity=0.970  Sum_probs=157.4

Q ss_pred             CCCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCC
Q 019054            1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDG   80 (347)
Q Consensus         1 ~~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~   80 (347)
                      |.||+|||||++++++.|+|+||||.+.+|+||+||++||+++...   .|.++.|++|.||||+|+|+|||||+..++|
T Consensus        16 ~~~~~v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~---~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g   92 (186)
T PLN03149         16 PKNPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRK---AGLPQGYKGCQFHRVIKDFMIQGGDFLKGDG   92 (186)
T ss_pred             CCCCEEEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhccc---cCcccccCCcEEEEEcCCcEEEcCCcccCCC
Confidence            4589999999999999999999999999999999999999876321   1333459999999999999999999887889


Q ss_pred             CCCCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEE-eChHHHHHHhcccCCCCC
Q 019054           81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVI-KGMGVVRSIEHVMTGDND  159 (347)
Q Consensus        81 ~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~-~g~~vl~~I~~~~~~~~~  159 (347)
                      +|+.++||..|++|++.++|+++|+|+|++.++++++|||||++.+.|+||++|+|||+|+ +||+++++|++++++..+
T Consensus        93 ~g~~~~~g~~f~~e~~~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~  172 (186)
T PLN03149         93 TGCVSIYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNN  172 (186)
T ss_pred             CCcccccCCccCCcccccccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999 799999999999998889


Q ss_pred             ccccceEeccceec
Q 019054          160 CPIADVTITDCGEI  173 (347)
Q Consensus       160 ~P~~~v~I~~~g~~  173 (347)
                      +|..+|+|.+||.+
T Consensus       173 ~P~~~i~I~~cG~~  186 (186)
T PLN03149        173 RPKLACVISECGEM  186 (186)
T ss_pred             CCcCCeEEEeCEeC
Confidence            99999999999874

>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain

Probab=100.00  E-value=3.3e-47  Score=313.42  Aligned_cols=164  Identities=68%  Similarity=1.149  Sum_probs=153.4

Q ss_pred             CeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCC
Q 019054            4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGG   83 (347)
Q Consensus         4 ~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~   83 (347)
                      |+||||++++|++.|+|+||||.+.||+||+||++||++.++.+   .+..||++|.||||+|+|+|||||+..++|+++
T Consensus         1 p~v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~---~~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~   77 (164)
T cd01926           1 PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKG---GKPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGG   77 (164)
T ss_pred             CEEEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCc---ccccccCCCEEEEEeCCcEEEcCCccCCCCCCC
Confidence            78999999999999999999999999999999999998754322   134489999999999999999999887788999


Q ss_pred             CcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCcccc
Q 019054           84 ESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIA  163 (347)
Q Consensus        84 ~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P~~  163 (347)
                      .++||..|++|++.++|+++|+|+|++.++++++|||||++++.|+||++|+|||+|++||+++++|++++++ +++|..
T Consensus        78 ~~~~g~~~~~e~~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~-~~~P~~  156 (164)
T cd01926          78 KSIYGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSG-NGKPKK  156 (164)
T ss_pred             CcccCCccCCCCccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCC-CCCCcC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998 789999


Q ss_pred             ceEeccce
Q 019054          164 DVTITDCG  171 (347)
Q Consensus       164 ~v~I~~~g  171 (347)
                      +|+|.+||
T Consensus       157 ~i~I~~cG  164 (164)
T cd01926         157 KVVIADCG  164 (164)
T ss_pred             CeEEEECC
Confidence            99999986

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl

>PTZ00060 cyclophilin; Provisional

Probab=100.00  E-value=3.5e-47  Score=317.43  Aligned_cols=170  Identities=62%  Similarity=1.018  Sum_probs=157.8

Q ss_pred             CCCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCC
Q 019054            1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDG   80 (347)
Q Consensus         1 ~~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~   80 (347)
                      |.||+||||++++|++.|+|+||||.+.||+||+||++||++...+.  .|+..+|+||.||||+|+++|||||+..++|
T Consensus        13 ~~~~~v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~--~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g   90 (183)
T PTZ00060         13 SKRPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGS--SGKNLHYKGSIFHRIIPQFMCQGGDITNHNG   90 (183)
T ss_pred             CCCCEEEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccc--cCcccccCCeEEEEEcCCCeEEeCCccCCCC
Confidence            45899999999999999999999999999999999999999764422  3556699999999999999999999987789


Q ss_pred             CCCCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCc
Q 019054           81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC  160 (347)
Q Consensus        81 ~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~  160 (347)
                      +++.++||..+++|++.++|.++|+|+|++.++++++|||||++.+.|+||++|+|||+|++||+++++|+.+++. .+.
T Consensus        91 ~~g~~~~g~~~~~e~~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~-~~~  169 (183)
T PTZ00060         91 TGGESIYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQ-SGY  169 (183)
T ss_pred             CCCCcccccccCCccccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCCC-CCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998875 478


Q ss_pred             cccceEeccceec
Q 019054          161 PIADVTITDCGEI  173 (347)
Q Consensus       161 P~~~v~I~~~g~~  173 (347)
                      |..+|.|.+|+++
T Consensus       170 P~~~v~I~~cg~~  182 (183)
T PTZ00060        170 PKKPVVVTDCGEL  182 (183)
T ss_pred             CcCCeEEEEeEEc
Confidence            9999999999986

>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5e-46  Score=297.00  Aligned_cols=144  Identities=53%  Similarity=0.848  Sum_probs=130.1

Q ss_pred             eeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCCcccCCCCCCC
Q 019054           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE   94 (347)
Q Consensus        15 ~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   94 (347)
                      ++.|+|+||||++.||+||+||++||+.+           ||+|+.||||||+|||||||++.++|+|++   +.+|++|
T Consensus         6 t~~G~I~ieL~~~~aP~Tv~NF~~l~~~g-----------~Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~---~~~f~~E   71 (158)
T COG0652           6 TNKGDITIELYPDKAPKTVANFLQLVKEG-----------FYDGTIFHRVIPGFMIQGGDPTGGDGTGGP---GPPFKDE   71 (158)
T ss_pred             ccCCCEEEEECCCcCcHHHHHHHHHHHcC-----------CCCCceEEEeecCceeecCCCCCCCCCCCC---CCCCccc
Confidence            55899999999999999999999999977           999999999999999999999987789888   4889999


Q ss_pred             ccccCCCC--ccEEEeeeCC-CCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCC----CccccceEe
Q 019054           95 NFELKHER--KGMLSMANAG-PNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDN----DCPIADVTI  167 (347)
Q Consensus        95 ~~~~~~~~--~g~~~~~~~~-~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~----~~P~~~v~I  167 (347)
                      ++...|.+  +|+|||||.+ ||||+|||||++.+.|+||++|+|||+|++||++|++|++..+...    ..|..++.|
T Consensus        72 ~~~~~~~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~~~~i  151 (158)
T COG0652          72 NFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKI  151 (158)
T ss_pred             ccccccccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCccCCCcccCCCCCCeEE
Confidence            99888887  9999999999 9999999999999999999999999999999999999999877653    345566666


Q ss_pred             cccee
Q 019054          168 TDCGE  172 (347)
Q Consensus       168 ~~~g~  172 (347)
                      .+..+
T Consensus       152 ~~~~~  156 (158)
T COG0652         152 LSVKI  156 (158)
T ss_pred             eeeee
Confidence            65443

>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain

Probab=100.00  E-value=7.5e-44  Score=291.49  Aligned_cols=156  Identities=47%  Similarity=0.787  Sum_probs=145.3

Q ss_pred             EEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCCc
Q 019054            6 CFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGES   85 (347)
Q Consensus         6 v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~   85 (347)
                      |.|+|+     .|+|+||||.+.||+||+||++||+.+           ||+|+.||||+|+|+|||||+. ++|.++.+
T Consensus         2 v~~~T~-----~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Y~~~~f~rv~~~~~iq~Gd~~-~~g~~~~~   64 (159)
T cd01923           2 VRLHTN-----KGDLNLELHCDKAPKACENFIKLCKKG-----------YYDGTIFHRSIRNFMIQGGDPT-GTGRGGES   64 (159)
T ss_pred             EEEEEc-----cccEEEEEeCCCChHHHHHHHHHHhcC-----------ccCCcEEEEEeCCcEEEecccC-CCCCCCcc
Confidence            556665     899999999999999999999999987           8999999999999999999986 67889999


Q ss_pred             ccCCCCCCCcc-ccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCccccc
Q 019054           86 IYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIAD  164 (347)
Q Consensus        86 ~~~~~~~~e~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P~~~  164 (347)
                      +||..+++|.. .++|+++|+|+|++.++++++|||||++++.|+||++|+|||+|++||++|++|+.++++.+++|..+
T Consensus        65 ~~g~~~~~E~~~~~~h~~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~~  144 (159)
T cd01923          65 IWGKPFKDEFKPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKEE  144 (159)
T ss_pred             ccCCccCcccccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCC
Confidence            99999999954 68899999999999999999999999999999999999999999999999999999999888999999


Q ss_pred             eEeccceecCCCCC
Q 019054          165 VTITDCGEIPEGAD  178 (347)
Q Consensus       165 v~I~~~g~~~~~~~  178 (347)
                      |+|.+|.++.++++
T Consensus       145 i~I~~~~i~~dpf~  158 (159)
T cd01923         145 IKIEDTSVFVDPFE  158 (159)
T ss_pred             eEEEEeEEEeCCCC
Confidence            99999999876654

This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.

>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like

Probab=100.00  E-value=9.2e-44  Score=288.81  Aligned_cols=148  Identities=50%  Similarity=0.849  Sum_probs=139.5

Q ss_pred             EEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCCc
Q 019054            6 CFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGES   85 (347)
Q Consensus         6 v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~   85 (347)
                      |.|+++     .|+|+||||++.||+||+||++||+++           ||+|+.||||+|+|+|||||+. ++|+++.+
T Consensus         3 v~l~T~-----~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Y~~~~f~rv~~~f~iq~Gd~~-~~g~g~~~   65 (153)
T cd01928           3 VTLHTN-----LGDIKIELFCDDCPKACENFLALCASG-----------YYNGCIFHRNIKGFMVQTGDPT-GTGKGGES   65 (153)
T ss_pred             EEEEEc-----cccEEEEEcCCCCcHHHHHHHHHHhcC-----------ccCCcEEEEeCCCCEEEccccC-CCCCCCCc
Confidence            667766     799999999999999999999999987           8999999999999999999986 67888899


Q ss_pred             ccCCCCCCCcc-ccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCccccc
Q 019054           86 IYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIAD  164 (347)
Q Consensus        86 ~~~~~~~~e~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P~~~  164 (347)
                      +||.+|++|.. .++|+++|+|+|++.++++++|||||++++.|+||++|+|||+|++||+++++|++++++..++|..+
T Consensus        66 ~~~~~~~~e~~~~~~~~~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~  145 (153)
T cd01928          66 IWGKKFEDEFRETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEE  145 (153)
T ss_pred             cCCCccccccccCCCcCCCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCC
Confidence            99999999986 67899999999999999999999999999999999999999999999999999999999888999999


Q ss_pred             eEeccc
Q 019054          165 VTITDC  170 (347)
Q Consensus       165 v~I~~~  170 (347)
                      |+|.++
T Consensus       146 i~I~~~  151 (153)
T cd01928         146 IRIKDV  151 (153)
T ss_pred             eEEEEe
Confidence            999876

Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.

>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain

Probab=100.00  E-value=1.5e-43  Score=286.16  Aligned_cols=143  Identities=58%  Similarity=0.889  Sum_probs=135.5

Q ss_pred             eeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCCcccCCCCCCC
Q 019054           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE   94 (347)
Q Consensus        15 ~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   94 (347)
                      ++.|+|+||||.+.||+||+||++||+++           ||+|+.||||+|||+|||||+. ++|.++.++||..|++|
T Consensus         4 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Y~~~~f~Rvi~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e   71 (148)
T cd01927           4 TTKGDIHIRLFPEEAPKTVENFTTHARNG-----------YYNNTIFHRVIKGFMIQTGDPT-GDGTGGESIWGKEFEDE   71 (148)
T ss_pred             eccccEEEEEeCCCCcHHHHHHHHHhhcC-----------CcCCcEEEEEcCCcEEEecccC-CCCCCCCcccCCccccc
Confidence            34899999999999999999999999987           8999999999999999999986 67889999999999999


Q ss_pred             cc-ccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCccccceEecc
Q 019054           95 NF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITD  169 (347)
Q Consensus        95 ~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P~~~v~I~~  169 (347)
                      .. .++|.++|+|+|++.++++++|||||++++.|+||++|+|||+|++||+++++|+.++++.+++|..+|+|.+
T Consensus        72 ~~~~~~h~~~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~  147 (148)
T cd01927          72 FSPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKIIN  147 (148)
T ss_pred             cccccCcCCCeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeEEEe
Confidence            76 7889999999999999999999999999999999999999999999999999999999988899999999875

This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.

>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)

Probab=100.00  E-value=9.1e-43  Score=287.37  Aligned_cols=153  Identities=40%  Similarity=0.663  Sum_probs=140.2

Q ss_pred             eeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCCcccC------
Q 019054           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYG------   88 (347)
Q Consensus        15 ~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~------   88 (347)
                      |+.|+|+||||.+.||+||+||++||+++           ||+|+.||||+|+|+|||||+. ++|.++.++|+      
T Consensus         4 Ts~G~i~ieL~~~~aP~t~~nF~~L~~~~-----------~Y~g~~fhrvi~~f~iQgGd~~-~~g~~~~~~~~~~~~~~   71 (166)
T cd01921           4 TTLGDLVIDLFTDECPLACLNFLKLCKLK-----------YYNFCLFYNVQKDFIAQTGDPT-GTGAGGESIYSQLYGRQ   71 (166)
T ss_pred             eccCCEEEEEcCCCCCHHHHHHHHHHhcC-----------CcCCCEEEEEeCCceEEECCcC-CCCCCCccccccccccc
Confidence            34799999999999999999999999987           8999999999999999999986 67888887775      


Q ss_pred             -CCCCCCcc-ccCCCCccEEEeeeCCCCCCCceEEEecCC-CCCCCCCCceeeEEEeChHHHHHHhcccCCCCCccccce
Q 019054           89 -LKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTR-TSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADV  165 (347)
Q Consensus        89 -~~~~~e~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~-~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P~~~v  165 (347)
                       ..|++|.. .++|+++|+|+|++.++++++|||||++.+ .|+||++|+|||+|++||+++++|+.++++.++.|..+|
T Consensus        72 ~~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~i  151 (166)
T cd01921          72 ARFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDI  151 (166)
T ss_pred             CcccCcccCCccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCe
Confidence             35777764 788999999999999999999999999985 799999999999999999999999999998889999999


Q ss_pred             EeccceecCCCCCC
Q 019054          166 TITDCGEIPEGADD  179 (347)
Q Consensus       166 ~I~~~g~~~~~~~~  179 (347)
                      +|.++.++..++++
T Consensus       152 ~I~~~~i~~~pf~~  165 (166)
T cd01921         152 RIKHTHILDDPFPD  165 (166)
T ss_pred             EEEEEEEECCCCCC
Confidence            99999999887765

This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.

>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2

Probab=100.00  E-value=7e-43  Score=281.42  Aligned_cols=141  Identities=57%  Similarity=0.885  Sum_probs=132.9

Q ss_pred             eeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCCcccCCCCCCC
Q 019054           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE   94 (347)
Q Consensus        15 ~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   94 (347)
                      ++.|+|+||||.+.||+||+||++||+.+           ||+++.||||+|+|+|||||+. ++|.++.++||..|++|
T Consensus         4 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Y~~~~f~Rvi~~f~iq~Gd~~-~~g~~~~~~~~~~~~~e   71 (146)
T cd01922           4 TTMGEITLELYWNHAPKTCKNFYELAKRG-----------YYNGTIFHRLIKDFMIQGGDPT-GTGRGGASIYGKKFEDE   71 (146)
T ss_pred             eccccEEEEEcCCCCcHHHHHHHHHHhcC-----------CcCCcEEEEEcCCcEEEecccC-CCCCCcccccCCCcccc
Confidence            45899999999999999999999999987           8999999999999999999986 67888899999999999


Q ss_pred             c-cccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCccccceEec
Q 019054           95 N-FELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTIT  168 (347)
Q Consensus        95 ~-~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P~~~v~I~  168 (347)
                      . ..++|+++|+|+|++.++++++|||||++++.|+||++|+|||+|++||+++++|+.++++ ++.|..+|+|.
T Consensus        72 ~~~~~~h~~~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~-~~~P~~~I~I~  145 (146)
T cd01922          72 IHPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQ-TDRPIDEVKIL  145 (146)
T ss_pred             cccCcCCCCCeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCC-CCCcCCCeEEe
Confidence            4 5789999999999999999999999999999999999999999999999999999999998 68999999885

These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.

>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.2e-43  Score=306.49  Aligned_cols=151  Identities=46%  Similarity=0.787  Sum_probs=144.4

Q ss_pred             eeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCCcccCCCCCCC
Q 019054           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE   94 (347)
Q Consensus        15 ~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   94 (347)
                      ++.|.+-|||+.|.+|++|+||+.||+.+           ||+|+.|||-|.+||||||||+ ++|.||.||||.+|.||
T Consensus       284 Tn~G~lNlELhcd~~P~aceNFI~lc~~g-----------YYnnt~FHRsIrnFmiQGGDPT-GTG~GGeSiWgKpFkDE  351 (518)
T KOG0883|consen  284 TNHGPLNLELHCDYAPRACENFITLCKNG-----------YYNNTIFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDE  351 (518)
T ss_pred             ccCCceeeEeecCcchHHHHHHHHHHhcc-----------cccchHHHHHHHHHeeeCCCCC-CCCCCCccccCCccccc
Confidence            34899999999999999999999999988           9999999999999999999998 89999999999999999


Q ss_pred             cc-ccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCccccceEeccceec
Q 019054           95 NF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI  173 (347)
Q Consensus        95 ~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P~~~v~I~~~g~~  173 (347)
                      .. .++|+.+|+|||||+|||+|||||||+..++-+||++|++||+|+.|+++|.+|+++++++.++|..+|.|.+..+.
T Consensus       352 f~~~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGldtL~amEnve~d~~DrP~e~I~i~~~~VF  431 (518)
T KOG0883|consen  352 FCSNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDTLTAMENVETDEKDRPKEEIKIEDAIVF  431 (518)
T ss_pred             cCCCCCcCCcceEeeccCCCCCCCceEEEEecchhhccccceeeeeeeccHHHHHHHhcCCCCCCCCcccceEEeeeEEe
Confidence            66 79999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             CCCC
Q 019054          174 PEGA  177 (347)
Q Consensus       174 ~~~~  177 (347)
                      -+++
T Consensus       432 VdPf  435 (518)
T KOG0883|consen  432 VDPF  435 (518)
T ss_pred             eCcH
Confidence            5543

>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.2e-43  Score=281.35  Aligned_cols=164  Identities=61%  Similarity=1.034  Sum_probs=154.8

Q ss_pred             CCCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEE---EecCceEEeccCCC
Q 019054            1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR---VIKGFMIQGGDISA   77 (347)
Q Consensus         1 ~~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~r---v~~~~~iq~G~~~~   77 (347)
                      |.||.||||++++++++|+++++||.|..|+|++||..||++.++.+        |++..|||   .+++||+||||++.
T Consensus         1 ~~~~~vf~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~--------yk~s~fhr~~~~~~~fm~qggDft~   72 (167)
T KOG0865|consen    1 MVNPTVFFDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFG--------YKGSCFHRLIPIIPGFMCQGGDFTC   72 (167)
T ss_pred             CCCCeeeeeeeecCccccccceecccccCcchHhhhhhcccCCCccc--------cccchhhhccccccceeeccCcccc
Confidence            78999999999999999999999999999999999999999887665        99999999   34479999999999


Q ss_pred             CCCCCCCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCC
Q 019054           78 GDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGD  157 (347)
Q Consensus        78 ~~~~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~  157 (347)
                      .+|+|+.||||++|+|||+.++|..+|+|+|||.|||+|+|||||++....|||++|+|||+|.+||+++++++......
T Consensus        73 hngtggkSiy~ekF~DenFilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~gs~~  152 (167)
T KOG0865|consen   73 HNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERFGSRN  152 (167)
T ss_pred             cCCccceEecccccCCcCcEEecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhccCCcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999966654


Q ss_pred             CCccccceEeccceec
Q 019054          158 NDCPIADVTITDCGEI  173 (347)
Q Consensus       158 ~~~P~~~v~I~~~g~~  173 (347)
                       +.|...+.|.+|+.+
T Consensus       153 -gk~~~~i~i~dcg~l  167 (167)
T KOG0865|consen  153 -GKTSKKITIADCGQL  167 (167)
T ss_pred             -CcccccEEEecCCcC
Confidence             889999999999864

>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.4e-42  Score=253.40  Aligned_cols=153  Identities=48%  Similarity=0.772  Sum_probs=143.1

Q ss_pred             EEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCCc
Q 019054            6 CFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGES   85 (347)
Q Consensus         6 v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~   85 (347)
                      |.+++.     .|+|.||||.+.+|++|+||+.||...           ||+|++|||-+|||++|+||++ .+|.||.|
T Consensus         3 vtlht~-----~gdikiev~~e~tpktce~~l~~~~~~-----------~~n~~~~~~~~~~f~v~~~~~~-~tgrgg~s   65 (161)
T KOG0884|consen    3 VTLHTD-----VGDIKIEVFCERTPKTCENFLALCASD-----------YYNGCIFHRNIKGFMVQTGDPT-HTGRGGNS   65 (161)
T ss_pred             EEEeec-----cCcEEEEEEecCChhHHHHHHHHhhhh-----------hccceeecCCCCCcEEEeCCCC-CCCCCCcc
Confidence            667766     699999999999999999999999887           9999999999999999999997 78999999


Q ss_pred             ccCCCCCCCcc-ccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCC-Ccccc
Q 019054           86 IYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDN-DCPIA  163 (347)
Q Consensus        86 ~~~~~~~~e~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~-~~P~~  163 (347)
                      |||.+|+||.. -++|+-+|.|||||.|||+|+||||||.+..|+||-+|+|||+|++|++.+++|+.+++++. .+|..
T Consensus        66 iwg~~fede~~~~lkh~~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v~~ktyrpl~  145 (161)
T KOG0884|consen   66 IWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLN  145 (161)
T ss_pred             ccCCcchHHHHHHHhhccceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhcccCccccccch
Confidence            99999999977 58999999999999999999999999999999999999999999999999999999999886 89999


Q ss_pred             ceEeccceecCC
Q 019054          164 DVTITDCGEIPE  175 (347)
Q Consensus       164 ~v~I~~~g~~~~  175 (347)
                      ++.|.+...-..
T Consensus       146 ~~~ik~itihan  157 (161)
T KOG0884|consen  146 DVHIKDITIHAN  157 (161)
T ss_pred             heeeeeeEEecC
Confidence            999988765433

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.7e-42  Score=307.21  Aligned_cols=146  Identities=55%  Similarity=0.846  Sum_probs=140.0

Q ss_pred             eeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCCcccCCCCCCC
Q 019054           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE   94 (347)
Q Consensus        15 ~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   94 (347)
                      ++.|+|.|.||++.||+||+||..-|+.+           ||+|..|||||+|||||+|||. ++|+||.||||..|+||
T Consensus       411 tt~gdi~~kl~p~ecpktvenf~th~rng-----------yy~~~~fhriik~fmiqtgdp~-g~gtggesiwg~dfede  478 (558)
T KOG0882|consen  411 TTQGDIHIKLYPEECPKTVENFTTHSRNG-----------YYDNHTFHRIIKGFMIQTGDPL-GDGTGGESIWGKDFEDE  478 (558)
T ss_pred             ecccceEEEecccccchhhhhhhccccCc-----------cccCcchHHhhhhheeecCCCC-CCCCCCcccccccchhh
Confidence            34799999999999999999999999988           9999999999999999999998 89999999999999999


Q ss_pred             cc-ccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCccccceEecccee
Q 019054           95 NF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGE  172 (347)
Q Consensus        95 ~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P~~~v~I~~~g~  172 (347)
                      .. .|+|++|.+|||||.|||+||||||||+.+.|||||+|+|||+|..||+|+..|+++.++..++|..++.|.+..+
T Consensus       479 fh~~lrhdrpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~drp~e~v~iinisv  557 (558)
T KOG0882|consen  479 FHPNLRHDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPYEDVKIINISV  557 (558)
T ss_pred             cCcccccCCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhcccCcCCCCCCceeEEEEec
Confidence            76 7999999999999999999999999999999999999999999999999999999999999999999999987643

>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16

Probab=100.00  E-value=3.3e-41  Score=278.91  Aligned_cols=158  Identities=40%  Similarity=0.710  Sum_probs=145.6

Q ss_pred             eEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCC
Q 019054            5 RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGE   84 (347)
Q Consensus         5 ~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~   84 (347)
                      .|.|+|+     .|+|+||||.+.+|+||+||++||+.+           ||+|+.||||+|+|+|||||+. ++|+++.
T Consensus         7 ~v~i~Ts-----~G~i~ieL~~~~~P~t~~nF~~L~~~~-----------~Y~~~~f~Rvi~~f~iQgGd~~-~~g~g~~   69 (171)
T cd01925           7 KVILKTT-----AGDIDIELWSKEAPKACRNFIQLCLEG-----------YYDNTIFHRVVPGFIIQGGDPT-GTGTGGE   69 (171)
T ss_pred             EEEEEEc-----cccEEEEEeCCCChHHHHHHHHHHhcC-----------CCCCCEEEEEcCCcEEEccccC-CCCccCc
Confidence            5777776     799999999999999999999999987           8999999999999999999986 6789999


Q ss_pred             cccCCCCCCCcc-ccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEe-ChHHHHHHhcccCCCCCccc
Q 019054           85 SIYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIK-GMGVVRSIEHVMTGDNDCPI  162 (347)
Q Consensus        85 ~~~~~~~~~e~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~-g~~vl~~I~~~~~~~~~~P~  162 (347)
                      ++||..|++|.. .++|+++|+|+|++.++++++|||||++++.|+||++|+|||+|+. ++.++++|+.+.++.+++|.
T Consensus        70 s~~g~~~~~E~~~~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~~P~  149 (171)
T cd01925          70 SIYGEPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDERPV  149 (171)
T ss_pred             ccCCCccCcccccCcCCCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCCCcC
Confidence            999999999976 5789999999999999999999999999999999999999999993 56778999999998889999


Q ss_pred             cceEeccceecCCCCCC
Q 019054          163 ADVTITDCGEIPEGADD  179 (347)
Q Consensus       163 ~~v~I~~~g~~~~~~~~  179 (347)
                      .+++|.+|.++..++++
T Consensus       150 ~~i~I~~~~i~~~pf~~  166 (171)
T cd01925         150 YPPKITSVEVLENPFDD  166 (171)
T ss_pred             CCeEEEEEEEEcCCchh
Confidence            99999999998766655

C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.

>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional

Probab=100.00  E-value=3.5e-40  Score=276.13  Aligned_cols=152  Identities=32%  Similarity=0.507  Sum_probs=133.9

Q ss_pred             CCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCC
Q 019054            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG   82 (347)
Q Consensus         3 ~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~   82 (347)
                      ++.|.|+|+     .|+|+||||.+.||+||+||++||+.+           ||+|+.||||+|+|+|||||+....+  
T Consensus        28 ~~~v~l~T~-----~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Ydg~~FhRvi~~f~iQgG~~~~~~~--   89 (190)
T PRK10903         28 DPHVLLTTS-----AGNIELELNSQKAPVSVKNFVDYVNSG-----------FYNNTTFHRVIPGFMIQGGGFTEQMQ--   89 (190)
T ss_pred             CcEEEEEec-----cccEEEEEeCCCCcHHHHHHHHHHhcC-----------CcCCcEEEEEeCCceEEeCCcCCCCC--
Confidence            567877776     799999999999999999999999987           99999999999999999999864322  


Q ss_pred             CCcccCCCCCCCccccCCCCccEEEeeeCC-CCCCCceEEEecCCCCCCCC-----CCceeeEEEeChHHHHHHhcccCC
Q 019054           83 GESIYGLKFEDENFELKHERKGMLSMANAG-PNTNGSQFFITTTRTSHLDG-----KHVVFGRVIKGMGVVRSIEHVMTG  156 (347)
Q Consensus        83 ~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~-~~~~~sqF~i~~~~~~~l~~-----~~~vfG~v~~g~~vl~~I~~~~~~  156 (347)
                       .+.++.+|.+|.....|+++|+|+|++.+ +|+++|||||++++.++||+     +|+|||+|++||+++++|++++++
T Consensus        90 -~~~~~~~~~~e~~~~l~~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~~  168 (190)
T PRK10903         90 -QKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTH  168 (190)
T ss_pred             -CCCCCCcccCcccccCcCCCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCCCC
Confidence             23346778888766667889999999976 99999999999999999984     899999999999999999999987


Q ss_pred             C----CCccccceEeccceec
Q 019054          157 D----NDCPIADVTITDCGEI  173 (347)
Q Consensus       157 ~----~~~P~~~v~I~~~g~~  173 (347)
                      .    .+.|..+|.|.+|.++
T Consensus       169 ~~~~~~~~P~~~v~I~~~~v~  189 (190)
T PRK10903        169 DVGPYQNVPSKPVVILSAKVL  189 (190)
T ss_pred             CCCCCCCcccCCeEEEEEEEe
Confidence            5    4689999999999775

>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional

Probab=100.00  E-value=2.6e-39  Score=265.00  Aligned_cols=149  Identities=34%  Similarity=0.576  Sum_probs=126.5

Q ss_pred             EEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCCc
Q 019054            6 CFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGES   85 (347)
Q Consensus         6 v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~   85 (347)
                      |.|+|+     .|+|+|+||.+.||+||+||++||+.+           ||+|+.||||+|+|+|||||+..+.+.   +
T Consensus         2 v~~~T~-----~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Yd~~~fhRvi~~f~iQgGd~~~~~~~---~   62 (164)
T PRK10791          2 VTFHTN-----HGDIVIKTFDDKAPETVKNFLDYCREG-----------FYNNTIFHRVINGFMIQGGGFEPGMKQ---K   62 (164)
T ss_pred             EEEEEc-----cccEEEEEeCCCCcHHHHHHHHHHhcC-----------CcCCcEEEEEecCcEEEeCCcCCCCCc---C
Confidence            455555     899999999999999999999999987           999999999999999999997643322   2


Q ss_pred             ccCCCCCCCccccCCCCccEEEeeeCC-CCCCCceEEEecCCCCCCC-------C-CCceeeEEEeChHHHHHHhcccCC
Q 019054           86 IYGLKFEDENFELKHERKGMLSMANAG-PNTNGSQFFITTTRTSHLD-------G-KHVVFGRVIKGMGVVRSIEHVMTG  156 (347)
Q Consensus        86 ~~~~~~~~e~~~~~~~~~g~~~~~~~~-~~~~~sqF~i~~~~~~~l~-------~-~~~vfG~v~~g~~vl~~I~~~~~~  156 (347)
                      .++..|++|.....++++|+||||+.+ |++++|||||++.+.++||       + +|+|||+|++||+++++|+.++++
T Consensus        63 ~~~~~~~~e~~~~~~~~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~  142 (164)
T PRK10791         63 ATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATG  142 (164)
T ss_pred             CCCCCcCCcccccccCCCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCC
Confidence            346678888544445579999999986 9999999999999988776       3 799999999999999999999997


Q ss_pred             CC----CccccceEeccceec
Q 019054          157 DN----DCPIADVTITDCGEI  173 (347)
Q Consensus       157 ~~----~~P~~~v~I~~~g~~  173 (347)
                      .+    +.|..+|.|.++.+.
T Consensus       143 ~~~~~~~~P~~~v~I~~~~i~  163 (164)
T PRK10791        143 RSGMHQDVPKEDVIIESVTVS  163 (164)
T ss_pred             CCCccCCCcCCCeEEEEEEEe
Confidence            63    689999999987553

>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E

Probab=100.00  E-value=1.6e-38  Score=258.90  Aligned_cols=141  Identities=37%  Similarity=0.530  Sum_probs=123.1

Q ss_pred             eeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCCcccCCCCCCC
Q 019054           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE   94 (347)
Q Consensus        15 ~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   94 (347)
                      ++.|+|+||||.+.||+||+||++||+.+           ||+|+.||||+|+|+|||||+....+.   ..++.++.+|
T Consensus         4 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Yd~~~fhRvi~~f~iQ~Gd~~~~~~~---~~~~~~~~~e   69 (155)
T cd01920           4 TSLGDIVVELYDDKAPITVENFLAYVRKG-----------FYDNTIFHRVISGFVIQGGGFTPDLAQ---KETLKPIKNE   69 (155)
T ss_pred             ecceeEEEEEeCCCCcHHHHHHHHHHhcC-----------CCCCCEEEEEeCCcEEEeCCCCCCCCc---cccCCcccCc
Confidence            34899999999999999999999999987           999999999999999999998743322   2346678888


Q ss_pred             ccccCCCCccEEEeeeCC-CCCCCceEEEecCCCCCCCC-----CCceeeEEEeChHHHHHHhcccCCCC----Cccccc
Q 019054           95 NFELKHERKGMLSMANAG-PNTNGSQFFITTTRTSHLDG-----KHVVFGRVIKGMGVVRSIEHVMTGDN----DCPIAD  164 (347)
Q Consensus        95 ~~~~~~~~~g~~~~~~~~-~~~~~sqF~i~~~~~~~l~~-----~~~vfG~v~~g~~vl~~I~~~~~~~~----~~P~~~  164 (347)
                      .....|+++|+||||+.+ |++++|||||++++.|+||+     +|+|||+|++||++|++|++++++..    ..|..+
T Consensus        70 ~~~~~~~~~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~  149 (155)
T cd01920          70 AGNGLSNTRGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQD  149 (155)
T ss_pred             ccccccCCceEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCC
Confidence            766667889999999976 89999999999999999995     79999999999999999999999764    578887


Q ss_pred             eEecc
Q 019054          165 VTITD  169 (347)
Q Consensus       165 v~I~~  169 (347)
                      |.|.+
T Consensus       150 v~i~~  154 (155)
T cd01920         150 VIIES  154 (155)
T ss_pred             eEEEE
Confidence            77754

coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.

>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.7e-38  Score=273.38  Aligned_cols=160  Identities=39%  Similarity=0.674  Sum_probs=147.3

Q ss_pred             eEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCC
Q 019054            5 RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGE   84 (347)
Q Consensus         5 ~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~   84 (347)
                      .|.+.++     .|+|.||||...||++|.||++||..+           ||+||.|||++|||.+|||||+ ++|+||.
T Consensus        14 kvil~TT-----~G~I~iELW~kE~P~acrnFiqKOGeg-----------yy~nt~fhrlvp~f~~Qggdp~-~~gtGge   76 (439)
T KOG0885|consen   14 KVILKTT-----KGDIDIELWAKECPKACRNFIQLCLEG-----------YYDNTEFHRLVPGFLVQGGDPT-GTGTGGE   76 (439)
T ss_pred             eEEEEec-----cCceeeeehhhhhhHHHHHHHHHHHhc-----------cccCceeeeeccchhcccCCCC-CCCCCcc
Confidence            4666666     799999999999999999999999988           9999999999999999999998 8999999


Q ss_pred             cccCCCCCCCcc-ccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEe-ChHHHHHHhcccCCCCCccc
Q 019054           85 SIYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIK-GMGVVRSIEHVMTGDNDCPI  162 (347)
Q Consensus        85 ~~~~~~~~~e~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~-g~~vl~~I~~~~~~~~~~P~  162 (347)
                      ||||.+|.+|.. .++++++|+|+|||.+.+.||||||+|++++|+|++++++||+|+. .+-.+..|..+.++.+.+|.
T Consensus        77 siyg~~fadE~h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~eida~~Rp~  156 (439)
T KOG0885|consen   77 SIYGRPFADEFHPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEIDADDRPV  156 (439)
T ss_pred             ccccccchhhcCcceeeeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhcccccccccCCC
Confidence            999999999966 7899999999999999999999999999999999999999999994 44567788899999889999


Q ss_pred             cceEeccceecCCCCCCCC
Q 019054          163 ADVTITDCGEIPEGADDGI  181 (347)
Q Consensus       163 ~~v~I~~~g~~~~~~~~~~  181 (347)
                      .+-.|.++.++..++++..
T Consensus       157 ~p~kI~s~EV~~npFdDI~  175 (439)
T KOG0885|consen  157 DPPKIKSVEVLINPFDDIK  175 (439)
T ss_pred             CccceeeeEeecCchhhcc
Confidence            9999999999988777653

>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases

Probab=100.00  E-value=2.8e-36  Score=245.21  Aligned_cols=140  Identities=62%  Similarity=0.976  Sum_probs=128.5

Q ss_pred             eeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCCcccCCCCCCCc
Q 019054           16 LEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDEN   95 (347)
Q Consensus        16 ~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~   95 (347)
                      +.|+|+||||++.+|++|+||++||+++           +|+|+.||||+|+++|||||+....+.+  +.++..+++|.
T Consensus         5 ~~G~i~IeL~~~~~P~~~~nF~~l~~~~-----------~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~--~~~~~~~~~E~   71 (146)
T cd00317           5 TKGRIVIELYGDEAPKTVENFLSLARGG-----------FYDGTTFHRVIPGFMIQGGDPTGTGGGG--SGPGYKFPDEN   71 (146)
T ss_pred             ccCcEEEEEcCCCChHHHHHHHHHHhcC-----------CcCCCEEEEEeCCCeEEECCCCCCCCCC--CcCCCccCCcc
Confidence            3699999999999999999999999987           8999999999999999999987544332  45678899998


Q ss_pred             cccC-CCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCccccceEec
Q 019054           96 FELK-HERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTIT  168 (347)
Q Consensus        96 ~~~~-~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P~~~v~I~  168 (347)
                      .... |+++|+|+|++.++++++|||||++.+.|+||++|+|||+|++||+++++|...+++.++.|..+|.|.
T Consensus        72 ~~~~~~~~~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~  145 (146)
T cd00317          72 FPLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTIS  145 (146)
T ss_pred             ccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEe
Confidence            8665 899999999999999999999999999999999999999999999999999999999889999999985

This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP

>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40

Probab=100.00  E-value=1.5e-36  Score=251.31  Aligned_cols=127  Identities=34%  Similarity=0.546  Sum_probs=111.5

Q ss_pred             eeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCC-------------
Q 019054           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT-------------   81 (347)
Q Consensus        15 ~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~-------------   81 (347)
                      ++.|+|+||||++.||+||+||++||+.+           ||+++.||||+|+|||||||+... ++             
T Consensus         4 T~~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Ydg~~FhRVi~~fviQgGdp~~~-~~~~~~~~~~~~~~~   71 (176)
T cd01924           4 TDNGTITIVLDGYNAPVTAGNFVDLVERG-----------FYDGMEFHRVEGGFVVQTGDPQGK-NPGFPDPETGKSRTI   71 (176)
T ss_pred             cccceEEEEEcCCCCCHHHHHHHHHHHhC-----------CcCCCEEEEecCCcEEEecCCCCC-CCCcccccccccccc
Confidence            56899999999999999999999999987           999999999999999999998743 21             


Q ss_pred             --------CCCcccCCCC-----CCCccccCCCCccEEEeeeCC--CCCCCceEEEecC-------CCCCCCCCCceeeE
Q 019054           82 --------GGESIYGLKF-----EDENFELKHERKGMLSMANAG--PNTNGSQFFITTT-------RTSHLDGKHVVFGR  139 (347)
Q Consensus        82 --------~~~~~~~~~~-----~~e~~~~~~~~~g~~~~~~~~--~~~~~sqF~i~~~-------~~~~l~~~~~vfG~  139 (347)
                              ++.++|+..+     .+++..+.|+++|+|||++.+  |||++|||||+++       +.|+||++|+|||+
T Consensus        72 p~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~  151 (176)
T cd01924          72 PLEIKPEGQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGY  151 (176)
T ss_pred             cceecccCCCCCccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEE
Confidence                    2335666554     356777889999999999998  6999999999998       78999999999999


Q ss_pred             EEeChHHHHHHhcc
Q 019054          140 VIKGMGVVRSIEHV  153 (347)
Q Consensus       140 v~~g~~vl~~I~~~  153 (347)
                      |++||++|++|+..
T Consensus       152 VveG~dvl~~I~~g  165 (176)
T cd01924         152 VTDGLDILRELKVG  165 (176)
T ss_pred             EecCHHHHHhhcCC
Confidence            99999999999753

Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.

>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms

Probab=100.00  E-value=1.3e-35  Score=243.81  Aligned_cols=151  Identities=50%  Similarity=0.839  Sum_probs=131.6

Q ss_pred             EEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCC-Cc
Q 019054            7 FLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGG-ES   85 (347)
Q Consensus         7 ~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~-~~   85 (347)
                      ||+|+.++  .|+|+||||++.||++|+||++||+.+           +|+|+.||||+|+++||||++....+.+. ..
T Consensus         1 ~~~i~t~~--~G~i~ieL~~~~aP~~~~nF~~l~~~~-----------~y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~   67 (155)
T PF00160_consen    1 FVDIETSG--LGRIVIELFGDEAPKTVENFLRLCTSG-----------FYDGTKFHRIIPNFVIQGGDPTGNGGYGREDS   67 (155)
T ss_dssp             EEEEEETT--EEEEEEEEETTTSHHHHHHHHHHHHTT-----------SSTTEBEEEEETTTEEEESSTTTSSSSTSEEB
T ss_pred             CEEEEeCC--ccCEEEEEeCCCCcHHHHhhehhhccc-----------ccCCceeecccccceeeeeeccCCCCcccccc
Confidence            78888755  899999999999999999999999977           89999999999999999999875433111 12


Q ss_pred             ccCCCCCCCcc-ccCCCCccEEEeeeCC--CCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCccc
Q 019054           86 IYGLKFEDENF-ELKHERKGMLSMANAG--PNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI  162 (347)
Q Consensus        86 ~~~~~~~~e~~-~~~~~~~g~~~~~~~~--~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P~  162 (347)
                      ..+.++++|.. ...++++|+|+|++.+  +++++|||||++.+.|++|++|+|||+|++||+++++|+..+++.  +|.
T Consensus        68 ~~~~~~~~E~~~~~~~~~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~--~p~  145 (155)
T PF00160_consen   68 TGGEPIPDEFNPSLLKHRRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE--RPK  145 (155)
T ss_dssp             TTBSCBSSSGBTTSSSSSTTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT--EBS
T ss_pred             cCccccccccccccccccceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC--ccC
Confidence            33556888884 4444489999999986  899999999999999999999999999999999999999998887  999


Q ss_pred             cceEecccee
Q 019054          163 ADVTITDCGE  172 (347)
Q Consensus       163 ~~v~I~~~g~  172 (347)
                      .+|.|.+|++
T Consensus       146 ~~v~I~~cgv  155 (155)
T PF00160_consen  146 QDVTISSCGV  155 (155)
T ss_dssp             STEEEEEEEE
T ss_pred             CCeEEEEeEC
Confidence            9999999985

It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....

>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.9e-36  Score=257.74  Aligned_cols=158  Identities=38%  Similarity=0.653  Sum_probs=147.1

Q ss_pred             EEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCCc
Q 019054            6 CFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGES   85 (347)
Q Consensus         6 v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~   85 (347)
                      |.++++     +|+|||+||.+.+|.||.||++||+-+           ||++|.||.|..+|.+|.|||+ ++|.||.|
T Consensus         3 VlieTt-----lGDlvIDLf~~erP~~clNFLKLCk~K-----------YYN~clfh~vq~~f~aQTGDPt-GtG~GG~s   65 (479)
T KOG0415|consen    3 VLIETT-----LGDLVIDLFVKERPRTCLNFLKLCKIK-----------YYNFCLFHTVQRDFTAQTGDPT-GTGDGGES   65 (479)
T ss_pred             EEEEee-----cccEEeeeecccCcHHHHHHHHHHhHh-----------hcccceeeeccccceeecCCCC-CCCCCcce
Confidence            788887     799999999999999999999999987           9999999999999999999998 69999999


Q ss_pred             ccCC-------CCCCCcc-ccCCCCccEEEeeeCCCCCCCceEEEecCC-CCCCCCCCceeeEEEeChHHHHHHhcccCC
Q 019054           86 IYGL-------KFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTR-TSHLDGKHVVFGRVIKGMGVVRSIEHVMTG  156 (347)
Q Consensus        86 ~~~~-------~~~~e~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~-~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~  156 (347)
                      |||.       .|+.|.. .++|.+.|+|||++.|.|-+||||||||+. ...|||+|+|||+|.+|++++.+|....++
T Consensus        66 i~~~lyG~q~rffeaE~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~vD  145 (479)
T KOG0415|consen   66 IYGVLYGEQARFFEAEFLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIVD  145 (479)
T ss_pred             eeeecccccchhhhhhhcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhcC
Confidence            9864       3666644 799999999999999999999999999997 468999999999999999999999999999


Q ss_pred             CCCccccceEeccceecCCCCCCC
Q 019054          157 DNDCPIADVTITDCGEIPEGADDG  180 (347)
Q Consensus       157 ~~~~P~~~v~I~~~g~~~~~~~~~  180 (347)
                      ....|..+|+|....++..+++++
T Consensus       146 ~~~rPykdIRI~HTiiLdDPFddp  169 (479)
T KOG0415|consen  146 PKNRPYKDIRIKHTIILDDPFDDP  169 (479)
T ss_pred             CCCCcccceeeeeeEEecCCCCCc
Confidence            999999999999999998888765

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.87  E-value=4.6e-22  Score=171.90  Aligned_cols=123  Identities=33%  Similarity=0.476  Sum_probs=118.8

Q ss_pred             HHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHH
Q 019054          207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLD  286 (347)
Q Consensus       207 ~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~  286 (347)
                      +....|+.++..||.+++.++|.+|+..|.+||.                  ++|.++..|+|+|.+|.++|.|+.|+.+
T Consensus        76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~------------------l~P~nAVyycNRAAAy~~Lg~~~~AVkD  137 (304)
T KOG0553|consen   76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIE------------------LDPTNAVYYCNRAAAYSKLGEYEDAVKD  137 (304)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh------------------cCCCcchHHHHHHHHHHHhcchHHHHHH
Confidence            4566899999999999999999999999999999                  9999999999999999999999999999


Q ss_pred             HHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcC
Q 019054          287 TEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVSR  347 (347)
Q Consensus       287 ~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  347 (347)
                      |+.||.+||.++++|.|+|.+|..+|+|++|++.|+++|+++|+++.++..|..+++++++
T Consensus       138 ce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e  198 (304)
T KOG0553|consen  138 CESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE  198 (304)
T ss_pred             HHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999999988764

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=8.5e-21  Score=170.49  Aligned_cols=143  Identities=31%  Similarity=0.430  Sum_probs=129.4

Q ss_pred             CcchhHHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCCh
Q 019054          201 TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL  280 (347)
Q Consensus       201 ~~~~~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~  280 (347)
                      +....++.+..|...+..||.+|+.|+|..|+..|++|++++.+....+.   ++..........+++|+|.||++++.|
T Consensus       197 ~~~~~~e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~---ee~~~~~~~k~~~~lNlA~c~lKl~~~  273 (397)
T KOG0543|consen  197 WKMFAEERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDE---EEQKKAEALKLACHLNLAACYLKLKEY  273 (397)
T ss_pred             cccchHHHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCH---HHHHHHHHHHHHHhhHHHHHHHhhhhH
Confidence            34445568889999999999999999999999999999998876544333   555567778889999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          281 KGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       281 ~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      .+|+..|+++|+++|.|.||+||+|+|+..+++|+.|+.+|+++++++|+|..+..+|..++++++
T Consensus       274 ~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~  339 (397)
T KOG0543|consen  274 KEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIR  339 (397)
T ss_pred             HHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999998875

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.78  E-value=2.3e-18  Score=140.29  Aligned_cols=128  Identities=27%  Similarity=0.372  Sum_probs=117.1

Q ss_pred             hHHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHH
Q 019054          205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGAL  284 (347)
Q Consensus       205 ~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~  284 (347)
                      .......+..++..||.+|+.|+|.+|...|..||.+.+.+             .......+|.|+|.|.++++.++.||
T Consensus        88 k~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~-------------~~e~rsIly~Nraaa~iKl~k~e~aI  154 (271)
T KOG4234|consen   88 KDKAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPST-------------STEERSILYSNRAAALIKLRKWESAI  154 (271)
T ss_pred             HHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccc-------------cHHHHHHHHhhhHHHHHHhhhHHHHH
Confidence            33456678999999999999999999999999999976655             55677889999999999999999999


Q ss_pred             HHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054          285 LDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV  345 (347)
Q Consensus       285 ~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  345 (347)
                      .+|.+||++.|.+.+|+.|||.+|..+..|++|+.+|++.++++|...+++..+.++...+
T Consensus       155 ~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i  215 (271)
T KOG4234|consen  155 EDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKI  215 (271)
T ss_pred             HHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHH
Confidence            9999999999999999999999999999999999999999999999999999888876554

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=3.7e-17  Score=137.16  Aligned_cols=145  Identities=28%  Similarity=0.285  Sum_probs=131.7

Q ss_pred             CcchhHHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCCh
Q 019054          201 TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL  280 (347)
Q Consensus       201 ~~~~~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~  280 (347)
                      |..+-.+.+.....+...||.+|+.|+|.+|...|..|+..+..+...+.+.+.+|..++.....++.|.++|++..++|
T Consensus       167 WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~  246 (329)
T KOG0545|consen  167 WQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEY  246 (329)
T ss_pred             ccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHH
Confidence            33445566777888999999999999999999999999999998888888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHh
Q 019054          281 KGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND-GGIKKELAVAKKKV  345 (347)
Q Consensus       281 ~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~~l~~~~~~~  345 (347)
                      -+++++|+.+|..+|.|.||||++|.++....+.++|.++|+++++++|.- +.+..+|..++.++
T Consensus       247 yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~  312 (329)
T KOG0545|consen  247 YEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRM  312 (329)
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999974 45667777776554

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.68  E-value=1.6e-16  Score=146.69  Aligned_cols=117  Identities=28%  Similarity=0.507  Sum_probs=112.3

Q ss_pred             hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (347)
Q Consensus       210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~  289 (347)
                      +.+...+..|+.+|+.|+|..|+.+|++||.                  .+|.++.+|.|+|.||.+++.+..|+.+|++
T Consensus       356 e~A~e~r~kGne~Fk~gdy~~Av~~YteAIk------------------r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~  417 (539)
T KOG0548|consen  356 EKAEEEREKGNEAFKKGDYPEAVKHYTEAIK------------------RDPEDARLYSNRAACYLKLGEYPEALKDAKK  417 (539)
T ss_pred             hHHHHHHHHHHHHHhccCHHHHHHHHHHHHh------------------cCCchhHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            3477789999999999999999999999999                  8899999999999999999999999999999


Q ss_pred             HhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054          290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (347)
Q Consensus       290 al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  344 (347)
                      +++++|++.++|+|.|.++..+.+|+.|++.|+++++++|++.++...+.++...
T Consensus       418 ~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a  472 (539)
T KOG0548|consen  418 CIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA  472 (539)
T ss_pred             HHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999988765

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.65  E-value=1.8e-15  Score=122.30  Aligned_cols=115  Identities=14%  Similarity=0.155  Sum_probs=109.2

Q ss_pred             HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (347)
Q Consensus       214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  293 (347)
                      .+...|..++..|+|++|+..|.+++.                  .+|....++.++|.++..+|++++|+..|++++++
T Consensus        26 ~~~~~g~~~~~~g~~~~A~~~~~~al~------------------~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l   87 (144)
T PRK15359         26 TVYASGYASWQEGDYSRAVIDFSWLVM------------------AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML   87 (144)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH------------------cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            466789999999999999999999999                  89999999999999999999999999999999999


Q ss_pred             CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       294 ~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      +|+++.+++++|.++..+|++++|+..|+++++++|+++.....++.++..++
T Consensus        88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~  140 (144)
T PRK15359         88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD  140 (144)
T ss_pred             CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998888876653

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.64  E-value=1.6e-15  Score=140.85  Aligned_cols=116  Identities=23%  Similarity=0.437  Sum_probs=110.9

Q ss_pred             HHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 019054          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (347)
Q Consensus       213 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  292 (347)
                      ..++..|+.+|..|+|.+|+.+|.+||+                  +.|....+|+++|.||+++|++++|+.++++|+.
T Consensus         3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~------------------~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~   64 (356)
T PLN03088          3 KDLEDKAKEAFVDDDFALAVDLYTQAID------------------LDPNNAELYADRAQANIKLGNFTEAVADANKAIE   64 (356)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4577889999999999999999999999                  8889999999999999999999999999999999


Q ss_pred             cCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       293 ~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      ++|+++.+|+++|.+|..+|+|++|+..|+++++++|+++.+...+..++.+++
T Consensus        65 l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~  118 (356)
T PLN03088         65 LDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIA  118 (356)
T ss_pred             hCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999987763

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.64  E-value=4.7e-16  Score=136.49  Aligned_cols=121  Identities=27%  Similarity=0.254  Sum_probs=114.0

Q ss_pred             hHHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHH
Q 019054          205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGAL  284 (347)
Q Consensus       205 ~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~  284 (347)
                      ...+++.+..+++.||.||++|.|++||.+|.+++.                  ..|.++..+.|+|.+|++++.|..|.
T Consensus        90 ~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia------------------~~P~NpV~~~NRA~AYlk~K~FA~AE  151 (536)
T KOG4648|consen   90 AQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIA------------------VYPHNPVYHINRALAYLKQKSFAQAE  151 (536)
T ss_pred             HHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhc------------------cCCCCccchhhHHHHHHHHHHHHHHH
Confidence            455677888899999999999999999999999999                  89999999999999999999999999


Q ss_pred             HHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 019054          285 LDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK  343 (347)
Q Consensus       285 ~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  343 (347)
                      .+|+.|+.++....+||.|||.+...+|...+|.++++.+|+|.|.+.++++.++.+..
T Consensus       152 ~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S  210 (536)
T KOG4648|consen  152 EDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINS  210 (536)
T ss_pred             HhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999998888776654

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.60  E-value=4.5e-15  Score=135.63  Aligned_cols=122  Identities=24%  Similarity=0.315  Sum_probs=105.0

Q ss_pred             chhHHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHH
Q 019054          203 NELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKG  282 (347)
Q Consensus       203 ~~~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~  282 (347)
                      ...+...+.|.+++..||-+|+.|.|++||.+|++||.                  +.|.-+..|.|++.||..+|+|++
T Consensus       106 ~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~------------------l~p~epiFYsNraAcY~~lgd~~~  167 (606)
T KOG0547|consen  106 MLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIE------------------LCPDEPIFYSNRAACYESLGDWEK  167 (606)
T ss_pred             cChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHh------------------cCCCCchhhhhHHHHHHHHhhHHH
Confidence            44566678899999999999999999999999999999                  777778999999999999999999


Q ss_pred             HHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHH
Q 019054          283 ALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP-NDGGIKKELAVAK  342 (347)
Q Consensus       283 A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P-~~~~~~~~l~~~~  342 (347)
                      .+++|++||+++|+.+||++||+.++..+|++.+|+.+..-..-+.. +|..+.-.+.++.
T Consensus       168 Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~L  228 (606)
T KOG0547|consen  168 VIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVL  228 (606)
T ss_pred             HHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHH
Confidence            99999999999999999999999999999999999999865444332 3444444444443

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.54  E-value=1.3e-13  Score=110.26  Aligned_cols=105  Identities=10%  Similarity=0.126  Sum_probs=98.7

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      ....++..|..++..|++++|...|+-...                  .+|.+...|+|+|.|+..+|+|++|+..|.+|
T Consensus        34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~------------------~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A   95 (157)
T PRK15363         34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTI------------------YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRA   95 (157)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            456788999999999999999999999999                  99999999999999999999999999999999


Q ss_pred             hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 019054          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG  333 (347)
Q Consensus       291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~  333 (347)
                      +.++|+++.++++.|.|++.+|+.+.|.+.|+.++.+.-.+++
T Consensus        96 ~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~  138 (157)
T PRK15363         96 AQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSE  138 (157)
T ss_pred             HhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChh
Confidence            9999999999999999999999999999999999999844333

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.53  E-value=2.7e-14  Score=132.15  Aligned_cols=113  Identities=28%  Similarity=0.420  Sum_probs=109.1

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  291 (347)
                      +..++..||.+|..|+|+.|+.+|+.||.                  ++|.+..+|.|+..||.++++|++|+.+..+.+
T Consensus         2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~------------------l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~   63 (539)
T KOG0548|consen    2 AVELKEKGNAAFSSGDFETAIRLFTEAIM------------------LSPTNHVLYSNRSAAYASLGSYEKALKDATKTR   63 (539)
T ss_pred             hhHHHHHHHhhcccccHHHHHHHHHHHHc------------------cCCCccchhcchHHHHHHHhhHHHHHHHHHHHH
Confidence            45678999999999999999999999999                  889999999999999999999999999999999


Q ss_pred             hcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (347)
Q Consensus       292 ~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  342 (347)
                      +++|+.+++|.|+|.++..+|+|++|+..|.+.|+.+|+|+.+...|..+.
T Consensus        64 ~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   64 RLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             hcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence            999999999999999999999999999999999999999999999998876

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.52  E-value=1.7e-13  Score=109.53  Aligned_cols=117  Identities=15%  Similarity=0.256  Sum_probs=108.9

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+.....+|..++..|++++|+..|++++.                  ..|....++.++|.++.+++++++|+..++++
T Consensus        16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~------------------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~   77 (135)
T TIGR02552        16 QLEQIYALAYNLYQQGRYDEALKLFQLLAA------------------YDPYNSRYWLGLAACCQMLKEYEEAIDAYALA   77 (135)
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHH------------------hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456678899999999999999999999998                  78889999999999999999999999999999


Q ss_pred             hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV  345 (347)
Q Consensus       291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  345 (347)
                      +.++|+++..++.+|.+|..+|++++|+..|+++++++|++.........+.+.+
T Consensus        78 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  132 (135)
T TIGR02552        78 AALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAML  132 (135)
T ss_pred             HhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999777777766654

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.49  E-value=8.4e-14  Score=125.14  Aligned_cols=128  Identities=28%  Similarity=0.435  Sum_probs=110.7

Q ss_pred             hhHHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHH
Q 019054          204 ELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGA  283 (347)
Q Consensus       204 ~~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A  283 (347)
                      ......+....++..||.+|+.|+|..|.+.|+.||.+-+.              ....++.+|.|+|.+..++|+..+|
T Consensus       241 ~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~--------------n~~~naklY~nra~v~~rLgrl~ea  306 (486)
T KOG0550|consen  241 SASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS--------------NKKTNAKLYGNRALVNIRLGRLREA  306 (486)
T ss_pred             hHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc--------------ccchhHHHHHHhHhhhcccCCchhh
Confidence            34445666778899999999999999999999999992211              3345678899999999999999999


Q ss_pred             HHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          284 LLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       284 ~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      +.+|+.|+.++|...+++.++|.|+..+++|++|+++|++|+++.-+ .+++..+.+++..++
T Consensus       307 isdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLk  368 (486)
T KOG0550|consen  307 ISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALK  368 (486)
T ss_pred             hhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999865 777777777765554

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.45  E-value=7.7e-14  Score=130.90  Aligned_cols=119  Identities=19%  Similarity=0.223  Sum_probs=83.2

Q ss_pred             HhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 019054          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (347)
Q Consensus       209 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~  288 (347)
                      ...|..+-++|.+|+.+|+.+-||..|++||+                  ++|....+|+|+|.+....|+..+|+.+|.
T Consensus       283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~------------------~~P~F~~Ay~NlanALkd~G~V~ea~~cYn  344 (966)
T KOG4626|consen  283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALE------------------LQPNFPDAYNNLANALKDKGSVTEAVDCYN  344 (966)
T ss_pred             CcchhhccceEEEEeccccHHHHHHHHHHHHh------------------cCCCchHHHhHHHHHHHhccchHHHHHHHH
Confidence            33455556666777777777777777777776                  667777777777777777777777777777


Q ss_pred             HHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054          289 FAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV  345 (347)
Q Consensus       289 ~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  345 (347)
                      +||.+.|..+.+++++|.+|..+|.+++|...|+++++..|.-..+.++|+.+.+..
T Consensus       345 kaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqq  401 (966)
T KOG4626|consen  345 KALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQ  401 (966)
T ss_pred             HHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhc
Confidence            777777777777777777777777777777777777777777777777776665543

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.44  E-value=3.5e-13  Score=126.56  Aligned_cols=199  Identities=21%  Similarity=0.255  Sum_probs=125.8

Q ss_pred             CCCCCCCceeeEEEeChHHH-HHHhcccCCCCCccccceEeccceecCCC---CCCCCCCcCCCCCCCCCCCCCCCC---
Q 019054          128 SHLDGKHVVFGRVIKGMGVV-RSIEHVMTGDNDCPIADVTITDCGEIPEG---ADDGISNFFNDGDSYPDWPADLDQ---  200 (347)
Q Consensus       128 ~~l~~~~~vfG~v~~g~~vl-~~I~~~~~~~~~~P~~~v~I~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---  200 (347)
                      |++-.-|.-+|.|.+.+.+. +++.........+|...+...+.+++--.   .+-++..+....+.-|.+|+.-..   
T Consensus       249 P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~Nlan  328 (966)
T KOG4626|consen  249 PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLAN  328 (966)
T ss_pred             CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHH
Confidence            33334467777777655432 34444333344567777777666655321   111122222233333444432211   


Q ss_pred             --------------CcchhHHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHH
Q 019054          201 --------------TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQI  266 (347)
Q Consensus       201 --------------~~~~~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (347)
                                    +.+.+..-..-|+++.++||++.+.|.+++|...|.+|++                  ..|..+.+
T Consensus       329 ALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~------------------v~p~~aaa  390 (966)
T KOG4626|consen  329 ALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE------------------VFPEFAAA  390 (966)
T ss_pred             HHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh------------------hChhhhhh
Confidence                          1111222233466778888888888888888888888888                  66777777


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054          267 FTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (347)
Q Consensus       267 ~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  344 (347)
                      +.|+|.+|.++|++++|+.+|++||+++|..+.+|.++|..|..+|+..+|+++|.+|+.++|.-.++..+|+.+.+.
T Consensus       391 ~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kD  468 (966)
T KOG4626|consen  391 HNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKD  468 (966)
T ss_pred             hhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhc
Confidence            777777777777777777777777777777777777777777777777777777777777777777777777776654

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.44  E-value=6.8e-13  Score=116.32  Aligned_cols=104  Identities=28%  Similarity=0.441  Sum_probs=94.8

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .|..++..||.+|+.++|..|+..|+++|+              ........++.+|.|+|.|.+.+|+|..|+.+|++|
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk--------------~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~a  145 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLK--------------KKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAA  145 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHh--------------hcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            788999999999999999999999999998              223345678899999999999999999999999999


Q ss_pred             hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 019054          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE  328 (347)
Q Consensus       291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~  328 (347)
                      +.++|++.||++|-|.|++.+.++++|..+++..++++
T Consensus       146 l~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d  183 (390)
T KOG0551|consen  146 LKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID  183 (390)
T ss_pred             HhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence            99999999999999999999999888888887776664

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.41  E-value=1.9e-12  Score=129.47  Aligned_cols=112  Identities=24%  Similarity=0.330  Sum_probs=100.5

Q ss_pred             cchhHHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChH
Q 019054          202 PNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLK  281 (347)
Q Consensus       202 ~~~~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~  281 (347)
                      ..+.+.....+..++..|+.+|+.|+|++|+..|+++|+                  ..|. ...|.|+|.||.++|+|+
T Consensus       117 ~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~------------------~~p~-~~~~~n~a~~~~~l~~~~  177 (615)
T TIGR00990       117 NLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIE------------------CKPD-PVYYSNRAACHNALGDWE  177 (615)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------cCCc-hHHHHHHHHHHHHhCCHH
Confidence            334455566788999999999999999999999999999                  5554 568999999999999999


Q ss_pred             HHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 019054          282 GALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG  332 (347)
Q Consensus       282 ~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  332 (347)
                      +|+.+|++||+++|++.++|+++|.+|..+|+|++|+.+|..++.+++.+.
T Consensus       178 ~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~  228 (615)
T TIGR00990       178 KVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRN  228 (615)
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc
Confidence            999999999999999999999999999999999999999998888876543

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.41  E-value=2.1e-12  Score=110.03  Aligned_cols=118  Identities=19%  Similarity=0.225  Sum_probs=104.9

Q ss_pred             hHHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHH-HHcCC--hH
Q 019054          205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACK-LKLGD--LK  281 (347)
Q Consensus       205 ~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~-~~l~~--~~  281 (347)
                      +...++.+..+..+|..+...|++++|+..|+++++                  +.|.+..++.++|.++ ...|+  ++
T Consensus        66 L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~------------------l~P~~~~~~~~lA~aL~~~~g~~~~~  127 (198)
T PRK10370         66 IRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQ------------------LRGENAELYAALATVLYYQAGQHMTP  127 (198)
T ss_pred             HHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHhcCCCCcH
Confidence            334455678899999999999999999999999999                  8999999999999985 67787  59


Q ss_pred             HHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 019054          282 GALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAV  340 (347)
Q Consensus       282 ~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~  340 (347)
                      +|+..++++++++|++..+++.+|.++..+|+|++|+..|+++++++|.+..-...+..
T Consensus       128 ~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~~  186 (198)
T PRK10370        128 QTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLVES  186 (198)
T ss_pred             HHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHH
Confidence            99999999999999999999999999999999999999999999999976654444433

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.41  E-value=2.2e-12  Score=117.07  Aligned_cols=105  Identities=14%  Similarity=0.061  Sum_probs=101.2

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+..+...|..+...|++++|+..|+++++                  .+|..+.+|+++|.++..+|++++|+..++++
T Consensus        63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~------------------l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~A  124 (296)
T PRK11189         63 RAQLHYERGVLYDSLGLRALARNDFSQALA------------------LRPDMADAYNYLGIYLTQAGNFDAAYEAFDSV  124 (296)
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            467789999999999999999999999999                  88999999999999999999999999999999


Q ss_pred             hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 019054          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG  333 (347)
Q Consensus       291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~  333 (347)
                      ++++|++..+++++|.++...|++++|+++|+++++++|+++.
T Consensus       125 l~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~  167 (296)
T PRK11189        125 LELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY  167 (296)
T ss_pred             HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            9999999999999999999999999999999999999999874

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=2.2e-12  Score=108.35  Aligned_cols=115  Identities=27%  Similarity=0.352  Sum_probs=105.4

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+..++..||.+|..++|..|+..|.+||.                  ..|..+..|.|+|.||+++++|+.+..+|.+|
T Consensus         9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~------------------~nP~~~~Y~tnralchlk~~~~~~v~~dcrra   70 (284)
T KOG4642|consen    9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAIC------------------INPTVASYYTNRALCHLKLKHWEPVEEDCRRA   70 (284)
T ss_pred             HHHHHHhccccccchhhhchHHHHHHHHHh------------------cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHH
Confidence            578899999999999999999999999999                  89999999999999999999999999999999


Q ss_pred             hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-----CCCHHHHHHHHHHHH
Q 019054          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE-----PNDGGIKKELAVAKK  343 (347)
Q Consensus       291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~-----P~~~~~~~~l~~~~~  343 (347)
                      ++++|+.++++|-+|.+......|++|+..+++|..+.     |.-.++...|..+++
T Consensus        71 lql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~  128 (284)
T KOG4642|consen   71 LQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKK  128 (284)
T ss_pred             HhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Confidence            99999999999999999999999999999999996663     234467777777654

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=99.38  E-value=3.4e-13  Score=124.01  Aligned_cols=118  Identities=31%  Similarity=0.421  Sum_probs=113.6

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .|..+++.++.+++.+.|+.|+..|.|||+                  ++|+.+..+-|++.++.+.++|..|+.++.+|
T Consensus         3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~------------------ldpnca~~~anRa~a~lK~e~~~~Al~Da~ka   64 (476)
T KOG0376|consen    3 SAEELKNEANEALKDKVFDVAVDLYSKAIE------------------LDPNCAIYFANRALAHLKVESFGGALHDALKA   64 (476)
T ss_pred             hhhhhhhHHhhhcccchHHHHHHHHHHHHh------------------cCCcceeeechhhhhheeechhhhHHHHHHhh
Confidence            467789999999999999999999999999                  99999999999999999999999999999999


Q ss_pred             hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      ++++|...++|+++|.+.+.++++.+|+.+|++...+.|+++.+...+.++++.+.
T Consensus        65 ie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs  120 (476)
T KOG0376|consen   65 IELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVS  120 (476)
T ss_pred             hhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999987764

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.36  E-value=2.2e-12  Score=90.43  Aligned_cols=67  Identities=36%  Similarity=0.527  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCC
Q 019054          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALN-DVDAAVESFEKALKLEP  329 (347)
Q Consensus       263 ~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~-~~~~A~~~~~~al~l~P  329 (347)
                      .+..|.++|.+++.+++|++|+.+|+++++++|+++.+++++|.+|..+| ++++|+++++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            35689999999999999999999999999999999999999999999999 79999999999999998

...

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.33  E-value=1.2e-11  Score=123.75  Aligned_cols=116  Identities=18%  Similarity=0.227  Sum_probs=77.4

Q ss_pred             hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (347)
Q Consensus       210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~  289 (347)
                      ..+..+..+|..++..|++++|+..|++++.                  .+|....+|.++|.++..+|++++|+.++++
T Consensus       329 ~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~------------------l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~  390 (615)
T TIGR00990       329 KEAIALNLRGTFKCLKGKHLEALADLSKSIE------------------LDPRVTQSYIKRASMNLELGDPDKAEEDFDK  390 (615)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            3456678889999999999999999999998                  4555555566666666666666666666666


Q ss_pred             HhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 019054          290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK  343 (347)
Q Consensus       290 al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  343 (347)
                      +++++|+++.+++.+|.++..+|++++|+.+|+++++++|++..++..++.+..
T Consensus       391 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~  444 (615)
T TIGR00990       391 ALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQY  444 (615)
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHH
Confidence            666666666666666666666666666666666666666655555555544443

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.30  E-value=2.4e-11  Score=94.38  Aligned_cols=109  Identities=15%  Similarity=0.116  Sum_probs=97.0

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHh---hHHHHHHHHHHHHHHcCChHHHHHHHH
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRK---TKSQIFTNSSACKLKLGDLKGALLDTE  288 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~nla~~~~~l~~~~~A~~~~~  288 (347)
                      ++.++..|..+++.|+|++|+..|.+++.                  ..|   ....+++.+|.++.+.+++++|+..++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~   63 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLK------------------KYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFL   63 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------HCCCccccHHHHHHHHHHHHhhccHHHHHHHHH
Confidence            35678899999999999999999999998                  333   235788999999999999999999999


Q ss_pred             HHhhcCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 019054          289 FAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (347)
Q Consensus       289 ~al~~~p~~---~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l  338 (347)
                      +++..+|++   ..+++.+|.++..++++++|+..++++++..|++..+...+
T Consensus        64 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~  116 (119)
T TIGR02795        64 AVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQ  116 (119)
T ss_pred             HHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHH
Confidence            999999885   67899999999999999999999999999999988766554

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.25  E-value=9.2e-11  Score=94.80  Aligned_cols=95  Identities=16%  Similarity=0.176  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhc
Q 019054          232 LRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMAL  311 (347)
Q Consensus       232 ~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~  311 (347)
                      ...|+++++                  .+|..   +.++|.++..+|++++|+..|++++.++|.+..+|+.+|.++..+
T Consensus        13 ~~~~~~al~------------------~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~   71 (144)
T PRK15359         13 EDILKQLLS------------------VDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMML   71 (144)
T ss_pred             HHHHHHHHH------------------cCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence            356778887                  66664   667999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcC
Q 019054          312 NDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVSR  347 (347)
Q Consensus       312 ~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  347 (347)
                      |++++|+..|+++++++|+++.++..++.+...+++
T Consensus        72 g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~  107 (144)
T PRK15359         72 KEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGE  107 (144)
T ss_pred             hhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC
Confidence            999999999999999999999999999998776653

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.25  E-value=8.1e-12  Score=118.55  Aligned_cols=135  Identities=19%  Similarity=0.191  Sum_probs=99.5

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhh------hccccCCCChhh----------hhhHHhhHHHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLD------ICWEKEGIDEGK----------SSSLRKTKSQIFTNSSACK  274 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~------~~~~~~~~~~~~----------~~~~~~~~~~~~~nla~~~  274 (347)
                      .++.|...||.+--+++++.|+..|++|+.+=+      ++...+....++          ....++....+|+.+|.+|
T Consensus       420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy  499 (638)
T KOG1126|consen  420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVY  499 (638)
T ss_pred             CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhe
Confidence            467889999999999999999999999998443      011111111111          1234666777888888888


Q ss_pred             HHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054          275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV  345 (347)
Q Consensus       275 ~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  345 (347)
                      +++++++.|.-++++|++++|.+.-.+...|.++.++|+.++|+..|++|+.++|.|+-.+...+.+...+
T Consensus       500 ~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~  570 (638)
T KOG1126|consen  500 LKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSL  570 (638)
T ss_pred             eccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhh
Confidence            88888888888888888888888888888888888888888888888888888888877777666665443

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.23  E-value=5.4e-11  Score=105.01  Aligned_cols=113  Identities=22%  Similarity=0.319  Sum_probs=104.2

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+..+.++|+.++.+|+|..|+.+|..|++                  .+|.+..+++.+|.+|+.+|+-.-|+.+++++
T Consensus        37 dvekhlElGk~lla~~Q~sDALt~yHaAve------------------~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rV   98 (504)
T KOG0624|consen   37 DVEKHLELGKELLARGQLSDALTHYHAAVE------------------GDPNNYQAIFRRATVYLAMGKSKAALQDLSRV   98 (504)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHc------------------CCchhHHHHHHHHHHHhhhcCCccchhhHHHH
Confidence            567789999999999999999999999999                  99999999999999999999999999999999


Q ss_pred             hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHH
Q 019054          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG---GIKKELAVA  341 (347)
Q Consensus       291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~---~~~~~l~~~  341 (347)
                      |++.|+..-|-..||.+++.+|++++|..+|...++.+|++.   ++...|..+
T Consensus        99 lelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~  152 (504)
T KOG0624|consen   99 LELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALI  152 (504)
T ss_pred             HhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhH
Confidence            999999999999999999999999999999999999999644   444444443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.23  E-value=7.3e-11  Score=117.54  Aligned_cols=118  Identities=9%  Similarity=0.066  Sum_probs=112.7

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+..+..+|.+....|+|++|..+++.++.                  +.|....++.+++.++.+++++++|+..++++
T Consensus        85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~------------------~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~  146 (694)
T PRK15179         85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ------------------RFPDSSEAFILMLRGVKRQQGIEAGRAEIELY  146 (694)
T ss_pred             cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh------------------hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            467889999999999999999999999999                  99999999999999999999999999999999


Q ss_pred             hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      +..+|+++.+++.+|.++.++|+|++|++.|++++..+|+++.++..++.+.+..+
T Consensus       147 l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G  202 (694)
T PRK15179        147 FSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRG  202 (694)
T ss_pred             hhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999998887665

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.22  E-value=2e-10  Score=95.88  Aligned_cols=109  Identities=22%  Similarity=0.204  Sum_probs=95.4

Q ss_pred             HhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 019054          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (347)
Q Consensus       209 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~  288 (347)
                      ...+..+...|..+...|+|++|+.+|+++++..+               ..+....++.++|.++.++|++++|+..++
T Consensus        32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~---------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~   96 (172)
T PRK02603         32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEE---------------DPNDRSYILYNMGIIYASNGEHDKALEYYH   96 (172)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh---------------ccchHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            34677889999999999999999999999998211               111235789999999999999999999999


Q ss_pred             HHhhcCCCChhHHHHHHHHHHhcCC--------------HHHHHHHHHHHHhhCCCCH
Q 019054          289 FAMRDGDDNVKALFRQGQAYMALND--------------VDAAVESFEKALKLEPNDG  332 (347)
Q Consensus       289 ~al~~~p~~~~a~~~~g~~~~~~~~--------------~~~A~~~~~~al~l~P~~~  332 (347)
                      +++.+.|.+..++..+|.++..+++              +++|++.++++++++|++-
T Consensus        97 ~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~  154 (172)
T PRK02603         97 QALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY  154 (172)
T ss_pred             HHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence            9999999999999999999999988              6889999999999999874

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=1.1e-10  Score=106.80  Aligned_cols=114  Identities=22%  Similarity=0.253  Sum_probs=106.1

Q ss_pred             HHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC
Q 019054          216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD  295 (347)
Q Consensus       216 ~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p  295 (347)
                      .-.||-|.-+++-++|+.+|++||+                  ++|....+|.-+|.-|+.+++-..|+..|++|++++|
T Consensus       334 CiIaNYYSlr~eHEKAv~YFkRALk------------------LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p  395 (559)
T KOG1155|consen  334 CIIANYYSLRSEHEKAVMYFKRALK------------------LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINP  395 (559)
T ss_pred             eeehhHHHHHHhHHHHHHHHHHHHh------------------cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCc
Confidence            3468888889999999999999999                  9999999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcC
Q 019054          296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVSR  347 (347)
Q Consensus       296 ~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  347 (347)
                      .+.+|||-+|++|..++=..=|+-.|++|+++-|+|+.++..|+.|..++.+
T Consensus       396 ~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~  447 (559)
T KOG1155|consen  396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNR  447 (559)
T ss_pred             hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999999999877653

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.21  E-value=2.7e-11  Score=84.90  Aligned_cols=67  Identities=24%  Similarity=0.387  Sum_probs=64.5

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcC-ChHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-DLKGALLDTEF  289 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-~~~~A~~~~~~  289 (347)
                      .|..+...|..++..|+|++|+..|+++++                  .+|..+.+++++|.||.++| ++.+|+.++++
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~------------------~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~   63 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE------------------LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEK   63 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH------------------HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence            577899999999999999999999999999                  89999999999999999999 79999999999


Q ss_pred             HhhcCC
Q 019054          290 AMRDGD  295 (347)
Q Consensus       290 al~~~p  295 (347)
                      |++++|
T Consensus        64 al~l~P   69 (69)
T PF13414_consen   64 ALKLDP   69 (69)
T ss_dssp             HHHHST
T ss_pred             HHHcCc
Confidence            999998

...

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.20  E-value=6.6e-11  Score=86.40  Aligned_cols=81  Identities=22%  Similarity=0.361  Sum_probs=72.2

Q ss_pred             hhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhh--HHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHH
Q 019054          225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKT--KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALF  302 (347)
Q Consensus       225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~  302 (347)
                      .|+|+.|+..|+++++                  ..|.  ....++++|.||+++|+|++|+..+++ +..++.+..+++
T Consensus         2 ~~~y~~Ai~~~~k~~~------------------~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~   62 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLE------------------LDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHY   62 (84)
T ss_dssp             TT-HHHHHHHHHHHHH------------------HHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHH
T ss_pred             CccHHHHHHHHHHHHH------------------HCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHH
Confidence            5899999999999999                  5552  567788899999999999999999999 889999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHH
Q 019054          303 RQGQAYMALNDVDAAVESFEKA  324 (347)
Q Consensus       303 ~~g~~~~~~~~~~~A~~~~~~a  324 (347)
                      .+|.++..+|+|++|+..|++|
T Consensus        63 l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   63 LLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHhcC
Confidence            9999999999999999999875

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.20  E-value=1.6e-10  Score=108.01  Aligned_cols=123  Identities=22%  Similarity=0.253  Sum_probs=107.2

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+..++++|...|..+.|.+|+.+|++++..++....           ..+.....+.|+|.++.+++++++||..+++|
T Consensus       413 Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~-----------e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~a  481 (611)
T KOG1173|consen  413 DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLN-----------EKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKA  481 (611)
T ss_pred             cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccc-----------cccchhHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence            3456789999999999999999999999965543311           11146678999999999999999999999999


Q ss_pred             hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (347)
Q Consensus       291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  344 (347)
                      |.+.|.++.++..+|.+|..+|+++.|++.|.+|+-++|+|.-+...|..+-..
T Consensus       482 L~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~  535 (611)
T KOG1173|consen  482 LLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED  535 (611)
T ss_pred             HHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999998888887766543

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.19  E-value=9.7e-11  Score=81.01  Aligned_cols=65  Identities=25%  Similarity=0.383  Sum_probs=60.7

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 019054          268 TNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG  332 (347)
Q Consensus       268 ~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  332 (347)
                      +.+|..+++.|+|++|+..++++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            35789999999999999999999999999999999999999999999999999999999999875

>PRK15331 chaperone protein SicA; Provisional

Probab=99.19  E-value=2e-10  Score=92.50  Aligned_cols=115  Identities=14%  Similarity=0.097  Sum_probs=102.9

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      ....++..|-.+|..|+|++|...|+-...                  .++.+...++.+|.|+..+++|++|+..|..|
T Consensus        36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~------------------~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A   97 (165)
T PRK15331         36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCI------------------YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVA   97 (165)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356678889999999999999999998877                  78888999999999999999999999999999


Q ss_pred             hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (347)
Q Consensus       291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  344 (347)
                      ..++++++...|..|.||..+|+.++|..+|+.+++ .|.+..++..-......
T Consensus        98 ~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~  150 (165)
T PRK15331         98 FTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVYLEA  150 (165)
T ss_pred             HHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999 67887776655544443

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.19  E-value=1.3e-10  Score=120.01  Aligned_cols=113  Identities=14%  Similarity=0.050  Sum_probs=82.5

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  291 (347)
                      +..+..+|..+.+.|++++|+..|+++++                  .+|....++.++|.++..+|++++|+..+++|+
T Consensus       609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~------------------l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL  670 (987)
T PRK09782        609 ANAYVARATIYRQRHNVPAAVSDLRAALE------------------LEPNNSNYQAALGYALWDSGDIAQSREMLERAH  670 (987)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            34456666677777777777777777777                  677777777777777777777777777777777


Q ss_pred             hcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (347)
Q Consensus       292 ~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  342 (347)
                      +++|+++.+++++|.++..+|++++|+..|+++++++|++..+......+.
T Consensus       671 ~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~  721 (987)
T PRK09782        671 KGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQN  721 (987)
T ss_pred             HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHH
Confidence            777777777777777777777777777777777777777766665555444

>PRK12370 invasion protein regulator; Provisional

Probab=99.18  E-value=1.7e-10  Score=113.74  Aligned_cols=93  Identities=15%  Similarity=0.091  Sum_probs=60.0

Q ss_pred             chhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHH
Q 019054          224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFR  303 (347)
Q Consensus       224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~  303 (347)
                      ..+++++|+..+++|++                  ++|.+..++..+|.++..+|++++|+..+++|++++|+++.+++.
T Consensus       316 ~~~~~~~A~~~~~~Al~------------------ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~  377 (553)
T PRK12370        316 KQNAMIKAKEHAIKATE------------------LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYY  377 (553)
T ss_pred             cchHHHHHHHHHHHHHh------------------cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            45566666666666666                  566666666666666666666666666666666666666666666


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q 019054          304 QGQAYMALNDVDAAVESFEKALKLEPNDGGI  334 (347)
Q Consensus       304 ~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~  334 (347)
                      +|.++..+|++++|+..|+++++++|.+...
T Consensus       378 lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~  408 (553)
T PRK12370        378 YGWNLFMAGQLEEALQTINECLKLDPTRAAA  408 (553)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCChhh
Confidence            6666666666666666666666666665443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.17  E-value=4.9e-10  Score=95.44  Aligned_cols=105  Identities=18%  Similarity=0.138  Sum_probs=96.1

Q ss_pred             chhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHH
Q 019054          224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFR  303 (347)
Q Consensus       224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~  303 (347)
                      ..++.++++..++++++                  .+|.+..+|.++|.+|+.+|++++|+..+++|++++|+++.++..
T Consensus        51 ~~~~~~~~i~~l~~~L~------------------~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~  112 (198)
T PRK10370         51 SQQTPEAQLQALQDKIR------------------ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAA  112 (198)
T ss_pred             CchhHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            46778899999999998                  899999999999999999999999999999999999999999999


Q ss_pred             HHHHH-HhcCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          304 QGQAY-MALND--VDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       304 ~g~~~-~~~~~--~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      +|.++ ...|+  +++|.+.++++++++|++..++..++.+....+
T Consensus       113 lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g  158 (198)
T PRK10370        113 LATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQA  158 (198)
T ss_pred             HHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcC
Confidence            99985 67787  599999999999999999999999987765543

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.17  E-value=1.5e-10  Score=84.62  Aligned_cols=98  Identities=41%  Similarity=0.571  Sum_probs=90.7

Q ss_pred             HHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC
Q 019054          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (347)
Q Consensus       215 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~  294 (347)
                      +..+|..++..|++++|+..++++++                  ..+....++..+|.++...+++++|+..+++++.+.
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~   64 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALE------------------LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD   64 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHh------------------cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            56788888999999999999999998                  555566889999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 019054          295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN  330 (347)
Q Consensus       295 p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  330 (347)
                      |.+..+++.+|.++...|++++|...+.++++++|.
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          65 PDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             CcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence            999999999999999999999999999999998874

>PRK12370 invasion protein regulator; Provisional

Probab=99.17  E-value=2.4e-10  Score=112.74  Aligned_cols=101  Identities=11%  Similarity=-0.009  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHH
Q 019054          228 YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQA  307 (347)
Q Consensus       228 y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~  307 (347)
                      +++|+..|++|++                  ++|..+.+++++|.++..+|++++|+..++++++++|.++.+++.++.+
T Consensus       354 ~~~A~~~~~~Al~------------------l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~  415 (553)
T PRK12370        354 YIVGSLLFKQANL------------------LSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWI  415 (553)
T ss_pred             HHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence            5668888888888                  8999999999999999999999999999999999999999888888888


Q ss_pred             HHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhc
Q 019054          308 YMALNDVDAAVESFEKALKLE-PNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       308 ~~~~~~~~~A~~~~~~al~l~-P~~~~~~~~l~~~~~~~~  346 (347)
                      ++..|++++|+..++++++.+ |+++.+...++.+...++
T Consensus       416 ~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G  455 (553)
T PRK12370        416 TYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKG  455 (553)
T ss_pred             HHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCC
Confidence            888999999999999999885 778888888888776554

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.16  E-value=1.1e-10  Score=110.92  Aligned_cols=171  Identities=16%  Similarity=0.187  Sum_probs=137.9

Q ss_pred             CccccceEeccceecCCCCCCCCCCcCCCCCCCCCCC-----------------CCCCCCcchhHHHHhhHHHHHHcCcc
Q 019054          159 DCPIADVTITDCGEIPEGADDGISNFFNDGDSYPDWP-----------------ADLDQTPNELSWWMNAVDSIKVFGNE  221 (347)
Q Consensus       159 ~~P~~~v~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~a~~~~~~g~~  221 (347)
                      ..|.....+.+|..+....+.++..|..+..+-+.+.                 .....+-..+.-..+.-.+++-+|.+
T Consensus       419 ~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~v  498 (638)
T KOG1126|consen  419 NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTV  498 (638)
T ss_pred             CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhh
Confidence            6788888888888776655554444433333222211                 00000111111123345678999999


Q ss_pred             ccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHH
Q 019054          222 HYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKAL  301 (347)
Q Consensus       222 ~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~  301 (347)
                      |.++++|+.|.-+|++|+.                  .+|.+..+.+-+|..+.++|+.++|+..+++|+.++|.++-+.
T Consensus       499 y~Kqek~e~Ae~~fqkA~~------------------INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~  560 (638)
T KOG1126|consen  499 YLKQEKLEFAEFHFQKAVE------------------INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCK  560 (638)
T ss_pred             eeccchhhHHHHHHHhhhc------------------CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhH
Confidence            9999999999999999999                  8999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcC
Q 019054          302 FRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVSR  347 (347)
Q Consensus       302 ~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  347 (347)
                      |.+|.++..+++|++|+..+++.-++.|++..+...++++.+++++
T Consensus       561 ~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~  606 (638)
T KOG1126|consen  561 YHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGN  606 (638)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcc
Confidence            9999999999999999999999999999999999999999887753

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=3.4e-10  Score=103.56  Aligned_cols=120  Identities=16%  Similarity=0.228  Sum_probs=112.9

Q ss_pred             HhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 019054          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (347)
Q Consensus       209 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~  288 (347)
                      ++...++--+|-.+...++...|++.|++|++                  ..|.+..+|+.+|++|.-++.+.-|+-+++
T Consensus       361 p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd------------------i~p~DyRAWYGLGQaYeim~Mh~YaLyYfq  422 (559)
T KOG1155|consen  361 PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD------------------INPRDYRAWYGLGQAYEIMKMHFYALYYFQ  422 (559)
T ss_pred             cchhHHHHHhhHHHHHhcccHHHHHHHHHHHh------------------cCchhHHHHhhhhHHHHHhcchHHHHHHHH
Confidence            44566778899999999999999999999999                  999999999999999999999999999999


Q ss_pred             HHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          289 FAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       289 ~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      +|+.+.|.+...|-.+|.||.++++.++|+++|.+|+.+.-.+..+...|+.+.++++
T Consensus       423 kA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~  480 (559)
T KOG1155|consen  423 KALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELK  480 (559)
T ss_pred             HHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998888899999999887764

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.16  E-value=1.7e-10  Score=96.93  Aligned_cols=115  Identities=25%  Similarity=0.210  Sum_probs=77.4

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  291 (347)
                      ..++..++..|.+.|+.+.|-+.|++|+.                  +.|.+..+++|.|.-+..+|+|++|...|++|+
T Consensus        69 ~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls------------------l~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al  130 (250)
T COG3063          69 YLAHLVRAHYYQKLGENDLADESYRKALS------------------LAPNNGDVLNNYGAFLCAQGRPEEAMQQFERAL  130 (250)
T ss_pred             HHHHHHHHHHHHHcCChhhHHHHHHHHHh------------------cCCCccchhhhhhHHHHhCCChHHHHHHHHHHH
Confidence            33444444444444444444444444444                  666666677777776667777777777777766


Q ss_pred             hc--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054          292 RD--GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (347)
Q Consensus       292 ~~--~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  344 (347)
                      ..  .+..+..+-++|.|.++.|+++.|..+|+++++++|+.+....++...+.+
T Consensus       131 ~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~  185 (250)
T COG3063         131 ADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYK  185 (250)
T ss_pred             hCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHh
Confidence            43  244467788888888888888888888888888888888888777776544

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.14  E-value=1.5e-10  Score=108.43  Aligned_cols=117  Identities=16%  Similarity=0.177  Sum_probs=105.6

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  291 (347)
                      ++...-+|..|+-.|+|+.|+.+|+.||.                  ..|.+..+|+.+|..+..-.+..+||..|++||
T Consensus       430 pdvQ~~LGVLy~ls~efdraiDcf~~AL~------------------v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rAL  491 (579)
T KOG1125|consen  430 PDVQSGLGVLYNLSGEFDRAVDCFEAALQ------------------VKPNDYLLWNRLGATLANGNRSEEAISAYNRAL  491 (579)
T ss_pred             hhHHhhhHHHHhcchHHHHHHHHHHHHHh------------------cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHH
Confidence            44566789999999999999999999999                  999999999999999999999999999999999


Q ss_pred             hcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----------CHHHHHHHHHHHHHhc
Q 019054          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN----------DGGIKKELAVAKKKVS  346 (347)
Q Consensus       292 ~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~----------~~~~~~~l~~~~~~~~  346 (347)
                      ++.|....+.|++|.+++.+|.|++|+..|-.||.+.+.          +..++..|+.+...++
T Consensus       492 qLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~  556 (579)
T KOG1125|consen  492 QLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMN  556 (579)
T ss_pred             hcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcC
Confidence            999999999999999999999999999999999999875          1347777776655443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.13  E-value=9.9e-10  Score=91.25  Aligned_cols=108  Identities=20%  Similarity=0.127  Sum_probs=90.6

Q ss_pred             hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (347)
Q Consensus       210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~  289 (347)
                      ..+..+...|..++..|+|++|+..|.+++.+.+               .......++.++|.++..+|++++|+..+++
T Consensus        33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~---------------~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~   97 (168)
T CHL00033         33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI---------------DPYDRSYILYNIGLIHTSNGEHTKALEYYFQ   97 (168)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc---------------cchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3678889999999999999999999999998311               1112456899999999999999999999999


Q ss_pred             HhhcCCCChhHHHHHHHHHH-------hcCCHH-------HHHHHHHHHHhhCCCCH
Q 019054          290 AMRDGDDNVKALFRQGQAYM-------ALNDVD-------AAVESFEKALKLEPNDG  332 (347)
Q Consensus       290 al~~~p~~~~a~~~~g~~~~-------~~~~~~-------~A~~~~~~al~l~P~~~  332 (347)
                      |+.++|.+..++..+|.++.       .+|+++       +|+..|++++.++|.+.
T Consensus        98 Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033         98 ALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             HHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            99999999999999999988       777877       56666667888888644

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.13  E-value=4.9e-10  Score=115.86  Aligned_cols=104  Identities=17%  Similarity=0.226  Sum_probs=95.2

Q ss_pred             chhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHH
Q 019054          224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFR  303 (347)
Q Consensus       224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~  303 (347)
                      ..|++++|+..|+++++                  ..|. ..++.++|.++.++|++++|+..+++++.++|+++.++..
T Consensus       588 ~~Gr~~eAl~~~~~AL~------------------l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~n  648 (987)
T PRK09782        588 IPGQPELALNDLTRSLN------------------IAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAA  648 (987)
T ss_pred             hCCCHHHHHHHHHHHHH------------------hCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            34777777777777777                  7775 8899999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          304 QGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       304 ~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      +|.++..+|++++|+..|+++++++|+++.++..++.+...++
T Consensus       649 LG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lG  691 (987)
T PRK09782        649 LGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLD  691 (987)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence            9999999999999999999999999999999999998877654

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.11  E-value=5.4e-11  Score=105.07  Aligned_cols=151  Identities=22%  Similarity=0.275  Sum_probs=123.9

Q ss_pred             CccccceEeccceecCCCCCCCCCCcCCCCCCCCCCCCCCCCCcchhHHHHhhHHHHHHcCccccchhhHHHHHHHHHHH
Q 019054          159 DCPIADVTITDCGEIPEGADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKA  238 (347)
Q Consensus       159 ~~P~~~v~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~a  238 (347)
                      ..|..+..|...+++..+.+.+..    .++          ......++.++.|...+..+..++..|.++.|+++|..+
T Consensus        75 s~~~~~~~~d~egviepd~d~pq~----MGd----------s~~e~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~a  140 (377)
T KOG1308|consen   75 SSPESDLEIDGEGVIEPDTDAPQE----MGD----------SNAEITEEMMDQANDKKVQASEALNDGEFDTAIELFTSA  140 (377)
T ss_pred             CCCCcchhccCCCccccCCCcchh----hch----------hhhhhhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccc
Confidence            445556667777776433322211    111          134567778889999999999999999999999999999


Q ss_pred             HHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHH
Q 019054          239 LRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAV  318 (347)
Q Consensus       239 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~  318 (347)
                      |.                  +.|....+|.+++.++++++++..|+.+|..|++++|+.++-|-.+|.+...+|+|++|.
T Consensus       141 i~------------------lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa  202 (377)
T KOG1308|consen  141 IE------------------LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA  202 (377)
T ss_pred             cc------------------cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence            99                  999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHH
Q 019054          319 ESFEKALKLEPNDGGIKKELAVAK  342 (347)
Q Consensus       319 ~~~~~al~l~P~~~~~~~~l~~~~  342 (347)
                      .++..+++++ -++.+-..|.++.
T Consensus       203 ~dl~~a~kld-~dE~~~a~lKeV~  225 (377)
T KOG1308|consen  203 HDLALACKLD-YDEANSATLKEVF  225 (377)
T ss_pred             HHHHHHHhcc-ccHHHHHHHHHhc
Confidence            9999999997 3555555554443

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.11  E-value=2.8e-10  Score=104.73  Aligned_cols=114  Identities=19%  Similarity=0.273  Sum_probs=93.8

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .|.++.-.|..+|-.|++-.|...+.++|.                  +++....+|..+|.+|+...+.++-..++++|
T Consensus       325 ~A~al~~~gtF~fL~g~~~~a~~d~~~~I~------------------l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A  386 (606)
T KOG0547|consen  325 MAEALLLRGTFHFLKGDSLGAQEDFDAAIK------------------LDPAFNSLYIKRAAAYADENQSEKMWKDFNKA  386 (606)
T ss_pred             HHHHHHHhhhhhhhcCCchhhhhhHHHHHh------------------cCcccchHHHHHHHHHhhhhccHHHHHHHHHH
Confidence            478889999999999999999999999999                  66777777888888888888888888888888


Q ss_pred             hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (347)
Q Consensus       291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  342 (347)
                      ..++|.|+..||.||+.++-+++|++|+.+|++|+.|+|.+.-....++-+.
T Consensus       387 ~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~  438 (606)
T KOG0547|consen  387 EDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCAL  438 (606)
T ss_pred             HhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHH
Confidence            8888888888888888888888888888888888888887776665555444

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.10  E-value=1.2e-09  Score=94.17  Aligned_cols=132  Identities=17%  Similarity=0.189  Sum_probs=64.8

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhcc-----------ccCCCCh-----hhhhhHHhhHHHHHHHHHHHHH
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW-----------EKEGIDE-----GKSSSLRKTKSQIFTNSSACKL  275 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~-----------~~~~~~~-----~~~~~~~~~~~~~~~nla~~~~  275 (347)
                      +..+..+|..++..|+|++|+..++++++..+...           .....+.     .......|....++.++|.++.
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  110 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC  110 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence            45556666666666677777777766666211000           0000000     0000023333444555555555


Q ss_pred             HcCChHHHHHHHHHHhhcC--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 019054          276 KLGDLKGALLDTEFAMRDG--DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK  343 (347)
Q Consensus       276 ~l~~~~~A~~~~~~al~~~--p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  343 (347)
                      .+|++++|+..+.+++...  +.....++.+|.++...|++++|...|.++++.+|.+......++.+..
T Consensus       111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  180 (234)
T TIGR02521       111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYY  180 (234)
T ss_pred             HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHH
Confidence            5555555555555555432  2334455555555555566666666666666666655555555554443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.10  E-value=1.3e-09  Score=94.10  Aligned_cols=85  Identities=14%  Similarity=0.102  Sum_probs=76.2

Q ss_pred             hhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 019054          261 KTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAV  340 (347)
Q Consensus       261 ~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~  340 (347)
                      +.....+.++|.++..+|++++|+..+.+++..+|.+..+++.+|.++..+|++++|+..+++++++.|.+......+..
T Consensus       132 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~  211 (234)
T TIGR02521       132 PQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIR  211 (234)
T ss_pred             ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            34556789999999999999999999999999999999999999999999999999999999999998888887776666


Q ss_pred             HHHHh
Q 019054          341 AKKKV  345 (347)
Q Consensus       341 ~~~~~  345 (347)
                      +....
T Consensus       212 ~~~~~  216 (234)
T TIGR02521       212 IARAL  216 (234)
T ss_pred             HHHHH
Confidence            65543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.08  E-value=2.6e-09  Score=97.01  Aligned_cols=108  Identities=19%  Similarity=0.105  Sum_probs=94.1

Q ss_pred             chhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHH
Q 019054          224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFR  303 (347)
Q Consensus       224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~  303 (347)
                      ..++.+.++..+.++|...+              ...+..+..|+++|.+|..+|++++|+..++++++++|+++.+|+.
T Consensus        38 ~~~~~e~~i~~~~~~l~~~~--------------~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~  103 (296)
T PRK11189         38 PTLQQEVILARLNQILASRD--------------LTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNY  103 (296)
T ss_pred             CchHHHHHHHHHHHHHcccc--------------CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            34578889999999886211              0234557889999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054          304 QGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV  345 (347)
Q Consensus       304 ~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  345 (347)
                      +|.++..+|++++|+..|+++++++|++..++..++.+....
T Consensus       104 lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~  145 (296)
T PRK11189        104 LGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYG  145 (296)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence            999999999999999999999999999999998888776543

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.07  E-value=1.1e-09  Score=95.95  Aligned_cols=113  Identities=15%  Similarity=0.170  Sum_probs=97.6

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+..+...|..++..|+|++|+..|++++...+               ..+....+++.+|.++.+++++++|+..++++
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p---------------~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~   96 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYP---------------FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRF   96 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            466789999999999999999999999998221               12234468899999999999999999999999


Q ss_pred             hhcCCCChh---HHHHHHHHHHhc--------CCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 019054          291 MRDGDDNVK---ALFRQGQAYMAL--------NDVDAAVESFEKALKLEPNDGGIKKEL  338 (347)
Q Consensus       291 l~~~p~~~~---a~~~~g~~~~~~--------~~~~~A~~~~~~al~l~P~~~~~~~~l  338 (347)
                      ++.+|+++.   +++.+|.++...        +++++|++.|+++++.+|.+......+
T Consensus        97 l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~  155 (235)
T TIGR03302        97 IRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAK  155 (235)
T ss_pred             HHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHH
Confidence            999998876   799999999987        889999999999999999987655443

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.07  E-value=3.9e-10  Score=99.69  Aligned_cols=121  Identities=18%  Similarity=0.201  Sum_probs=100.0

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  291 (347)
                      .......+......++|.++++.+++.++.-++              ..+.....+..++.|+.+-+++.+||..|.++|
T Consensus       269 v~K~les~e~~ie~~~~t~cle~ge~vlk~ep~--------------~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL  334 (504)
T KOG0624|consen  269 VVKSLESAEQAIEEKHWTECLEAGEKVLKNEPE--------------ETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL  334 (504)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCc--------------ccceeeeeeheeeecccccCCHHHHHHHHHHHH
Confidence            333444555666788888999999888881110              112233455668999999999999999999999


Q ss_pred             hcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       292 ~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      .++|+++.++..||.+|+.-..|+.|+.+|++|.+++|+|..++..+..+++..+
T Consensus       335 ~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkk  389 (504)
T KOG0624|consen  335 DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKK  389 (504)
T ss_pred             hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999887653

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.06  E-value=1.7e-09  Score=86.20  Aligned_cols=88  Identities=14%  Similarity=0.096  Sum_probs=82.8

Q ss_pred             HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 019054          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (347)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l  338 (347)
                      ..|....+...+|.++...|++++|+..+++++.++|.+..+++++|.++..+|++++|+..|+++++++|.+......+
T Consensus        12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l   91 (135)
T TIGR02552        12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA   91 (135)
T ss_pred             CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence            78888899999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHhc
Q 019054          339 AVAKKKVS  346 (347)
Q Consensus       339 ~~~~~~~~  346 (347)
                      +.+....+
T Consensus        92 a~~~~~~g   99 (135)
T TIGR02552        92 AECLLALG   99 (135)
T ss_pred             HHHHHHcC
Confidence            88766543

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.06  E-value=1.6e-09  Score=92.89  Aligned_cols=114  Identities=18%  Similarity=0.168  Sum_probs=107.3

Q ss_pred             HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (347)
Q Consensus       214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  293 (347)
                      .+...|...+..|+|..|+..+.++.+                  ..|.+..+|.-+|.+|.++|++++|...|.+|+++
T Consensus       102 ll~~~gk~~~~~g~~~~A~~~~rkA~~------------------l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L  163 (257)
T COG5010         102 LLAAQGKNQIRNGNFGEAVSVLRKAAR------------------LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALEL  163 (257)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHhc------------------cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHh
Confidence            455589999999999999999999999                  99999999999999999999999999999999999


Q ss_pred             CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054          294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV  345 (347)
Q Consensus       294 ~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  345 (347)
                      .|.++.++.++|..|.-.|+++.|...+..+...-+.+..+..+|..+....
T Consensus       164 ~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~  215 (257)
T COG5010         164 APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQ  215 (257)
T ss_pred             ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999998888999999998876554

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.05  E-value=2.1e-09  Score=90.41  Aligned_cols=113  Identities=20%  Similarity=0.150  Sum_probs=102.3

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+.+...+|..|+..|++..|...+++||+                  .+|....+|.-+|..|.++|+.+.|-+.|++|
T Consensus        34 aa~arlqLal~YL~~gd~~~A~~nlekAL~------------------~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkA   95 (250)
T COG3063          34 AAKARLQLALGYLQQGDYAQAKKNLEKALE------------------HDPSYYLAHLVRAHYYQKLGENDLADESYRKA   95 (250)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCcccHHHHHHHHHHHHHcCChhhHHHHHHHH
Confidence            567788999999999999999999999999                  99999999999999999999999999999999


Q ss_pred             hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHH
Q 019054          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN---DGGIKKELAVAK  342 (347)
Q Consensus       291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~---~~~~~~~l~~~~  342 (347)
                      +.++|++...+.+.|.-++.+|+|++|...|++|+.. |.   -.....++..|-
T Consensus        96 lsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Ca  149 (250)
T COG3063          96 LSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD-PAYGEPSDTLENLGLCA  149 (250)
T ss_pred             HhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHH
Confidence            9999999999999999999999999999999999974 53   334555555543

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.04  E-value=1.4e-09  Score=109.16  Aligned_cols=110  Identities=15%  Similarity=0.124  Sum_probs=72.9

Q ss_pred             HHHHHcCccccchhhHHH----HHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 019054          213 DSIKVFGNEHYKKQDYKM----ALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (347)
Q Consensus       213 ~~~~~~g~~~~~~g~y~~----A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~  288 (347)
                      ..+..+|..++..|++++    |+..|+++++                  ..|....++.++|.++.++|++++|+..++
T Consensus       247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~------------------l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~  308 (656)
T PRK15174        247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ------------------FNSDNVRIVTLYADALIRTGQNEKAIPLLQ  308 (656)
T ss_pred             HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh------------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            334455556666666654    5666666665                  566666777777777777777777777777


Q ss_pred             HHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 019054          289 FAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAV  340 (347)
Q Consensus       289 ~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~  340 (347)
                      +++.++|+++.+++.+|.+|..+|++++|+..|+++++.+|.+......++.
T Consensus       309 ~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~  360 (656)
T PRK15174        309 QSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAA  360 (656)
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            7777777777777777777777777777777777777777766554443333

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.04  E-value=1.7e-09  Score=108.69  Aligned_cols=111  Identities=15%  Similarity=0.128  Sum_probs=99.8

Q ss_pred             cCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHH----HHHHHHHHhhc
Q 019054          218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKG----ALLDTEFAMRD  293 (347)
Q Consensus       218 ~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~----A~~~~~~al~~  293 (347)
                      .|..+...|++++|+..|.++++                  ..|....++.++|.++..+|++++    |+..|++++++
T Consensus       218 l~~~l~~~g~~~eA~~~~~~al~------------------~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l  279 (656)
T PRK15174        218 AVDTLCAVGKYQEAIQTGESALA------------------RGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF  279 (656)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHh------------------cCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence            35566777888888888888887                  778888999999999999999996    89999999999


Q ss_pred             CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       294 ~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      +|++..++..+|.++..+|++++|+..++++++++|+++.+...++.+....+
T Consensus       280 ~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G  332 (656)
T PRK15174        280 NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVG  332 (656)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence            99999999999999999999999999999999999999999998888765544

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.02  E-value=1.3e-09  Score=98.33  Aligned_cols=118  Identities=25%  Similarity=0.232  Sum_probs=102.0

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+..+...|..+.+.|++++|++.|+++++                  ..|.+..+...++.++...|+++++...+...
T Consensus       145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~------------------~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~  206 (280)
T PF13429_consen  145 SARFWLALAEIYEQLGDPDKALRDYRKALE------------------LDPDDPDARNALAWLLIDMGDYDEAREALKRL  206 (280)
T ss_dssp             -HHHHHHHHHHHHHCCHHHHHHHHHHHHHH------------------H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence            345678899999999999999999999999                  99999999999999999999999999999888


Q ss_pred             hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      ....|+++..+..+|.+|..+|++++|+..|+++++.+|+|+.+...++.+....+
T Consensus       207 ~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g  262 (280)
T PF13429_consen  207 LKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAG  262 (280)
T ss_dssp             HHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---
T ss_pred             HHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccc
Confidence            88888999999999999999999999999999999999999999999988876544

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.01  E-value=4.8e-09  Score=92.92  Aligned_cols=111  Identities=12%  Similarity=0.082  Sum_probs=94.7

Q ss_pred             HHHHHcCccc-cchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhH---HHHHHHHHHHHHHcCChHHHHHHHH
Q 019054          213 DSIKVFGNEH-YKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTK---SQIFTNSSACKLKLGDLKGALLDTE  288 (347)
Q Consensus       213 ~~~~~~g~~~-~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~nla~~~~~l~~~~~A~~~~~  288 (347)
                      ...+..|..+ ++.|+|++|+..|++.++                  ..|..   ..+++.+|.+|+..|++++|+..|.
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~------------------~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~  204 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVK------------------KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFA  204 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHH------------------HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3445555555 567999999999999999                  44433   5789999999999999999999999


Q ss_pred             HHhhcCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 019054          289 FAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (347)
Q Consensus       289 ~al~~~p~~---~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~  341 (347)
                      +++...|++   +.+++.+|.++..+|++++|...|+++++..|+...+......+
T Consensus       205 ~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL  260 (263)
T PRK10803        205 SVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRL  260 (263)
T ss_pred             HHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence            999998875   78999999999999999999999999999999988766655544

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.01  E-value=1.8e-09  Score=76.33  Aligned_cols=71  Identities=24%  Similarity=0.309  Sum_probs=66.1

Q ss_pred             HHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 019054          271 SACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (347)
Q Consensus       271 a~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~  341 (347)
                      ..+|++.++|++|+..+++++.++|+++.+++.+|.++..+|+|++|+++|+++++++|+++.+......+
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l   72 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML   72 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence            56789999999999999999999999999999999999999999999999999999999998887766543

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=99.01  E-value=3.8e-09  Score=80.93  Aligned_cols=103  Identities=25%  Similarity=0.292  Sum_probs=92.7

Q ss_pred             HhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 019054          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (347)
Q Consensus       209 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~  288 (347)
                      ++....+-..|..+-..|+.+.|++.|.++|.                  +-|..+.+|+|+|+++.-+|+.++|+++++
T Consensus        40 ~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~------------------l~P~raSayNNRAQa~RLq~~~e~ALdDLn  101 (175)
T KOG4555|consen   40 IKASRELELKAIALAEAGDLDGALELFGQALC------------------LAPERASAYNNRAQALRLQGDDEEALDDLN  101 (175)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHHHHHH------------------hcccchHhhccHHHHHHHcCChHHHHHHHH
Confidence            44556677788888999999999999999999                  888999999999999999999999999999


Q ss_pred             HHhhcCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 019054          289 FAMRDGDDN----VKALFRQGQAYMALNDVDAAVESFEKALKLEP  329 (347)
Q Consensus       289 ~al~~~p~~----~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P  329 (347)
                      +|+++.-+.    -.++..+|.+|..+|+-+.|..+|+.|-++-.
T Consensus       102 ~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS  146 (175)
T KOG4555|consen  102 KALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGS  146 (175)
T ss_pred             HHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence            999997554    46899999999999999999999999988853

>PLN02789 farnesyltranstransferase

Probab=99.00  E-value=5.2e-09  Score=95.48  Aligned_cols=117  Identities=12%  Similarity=-0.035  Sum_probs=100.3

Q ss_pred             HhhHHHHHHcCccccchh-hHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCCh--HHHHH
Q 019054          209 MNAVDSIKVFGNEHYKKQ-DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL--KGALL  285 (347)
Q Consensus       209 ~~~a~~~~~~g~~~~~~g-~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~--~~A~~  285 (347)
                      ++....+...|..+...+ ++++|+..+.+++.                  .+|.+..+|.+++.++.++++.  ++++.
T Consensus        68 P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~------------------~npknyqaW~~R~~~l~~l~~~~~~~el~  129 (320)
T PLN02789         68 PGNYTVWHFRRLCLEALDADLEEELDFAEDVAE------------------DNPKNYQIWHHRRWLAEKLGPDAANKELE  129 (320)
T ss_pred             chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHH------------------HCCcchHHhHHHHHHHHHcCchhhHHHHH
Confidence            334556667777777776 67888888888888                  8889999999999999999874  78899


Q ss_pred             HHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 019054          286 DTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK  343 (347)
Q Consensus       286 ~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  343 (347)
                      +++++++++|.|..+|..++.++..+++|++|++++.++++++|.|..++.....+..
T Consensus       130 ~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~  187 (320)
T PLN02789        130 FTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVIT  187 (320)
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998887766543

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.97  E-value=3.6e-09  Score=96.70  Aligned_cols=117  Identities=24%  Similarity=0.194  Sum_probs=108.4

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+.++.+.||..|..|+|++|.+.|..||+                  .+.....+++|+|..+.++|+.++|+++|-+.
T Consensus       489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~------------------ndasc~ealfniglt~e~~~~ldeald~f~kl  550 (840)
T KOG2003|consen  489 NAAALTNKGNIAFANGDLDKAAEFYKEALN------------------NDASCTEALFNIGLTAEALGNLDEALDCFLKL  550 (840)
T ss_pred             CHHHhhcCCceeeecCcHHHHHHHHHHHHc------------------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHH
Confidence            366788999999999999999999999999                  78888999999999999999999999999887


Q ss_pred             hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV  345 (347)
Q Consensus       291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  345 (347)
                      -.+=-++++.++.++.+|..+.+..+|+++|-++..+-|+|+.++..|+.+..+.
T Consensus       551 h~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqe  605 (840)
T KOG2003|consen  551 HAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQE  605 (840)
T ss_pred             HHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcc
Confidence            6666679999999999999999999999999999999999999999999887543

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.97  E-value=5.5e-09  Score=106.92  Aligned_cols=114  Identities=14%  Similarity=0.152  Sum_probs=106.7

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+..+..+|..+.+.|++++|+..|+++++                  ..|....++..+|.++...|++++|+..++++
T Consensus        48 ~a~~~~~lA~~~~~~g~~~~A~~~~~~al~------------------~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~  109 (765)
T PRK10049         48 PARGYAAVAVAYRNLKQWQNSLTLWQKALS------------------LEPQNDDYQRGLILTLADAGQYDEALVKAKQL  109 (765)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            345688899999999999999999999999                  88888999999999999999999999999999


Q ss_pred             hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 019054          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK  343 (347)
Q Consensus       291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  343 (347)
                      ++.+|++.. ++.+|.++...|++++|+..|+++++++|+++.+...++.+..
T Consensus       110 l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~  161 (765)
T PRK10049        110 VSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALR  161 (765)
T ss_pred             HHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            999999999 9999999999999999999999999999999999888777654

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.92  E-value=1.3e-08  Score=81.64  Aligned_cols=88  Identities=10%  Similarity=0.032  Sum_probs=81.5

Q ss_pred             HH-hhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 019054          259 LR-KTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKE  337 (347)
Q Consensus       259 ~~-~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~  337 (347)
                      .. +......+.+|..++..|++++|...|+.++.++|.+...|+.+|.++..+|+|++|+..|.+|+.++|+|+.....
T Consensus        29 ~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~  108 (157)
T PRK15363         29 DDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWA  108 (157)
T ss_pred             CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence            44 56677888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhc
Q 019054          338 LAVAKKKVS  346 (347)
Q Consensus       338 l~~~~~~~~  346 (347)
                      ++.+.-+++
T Consensus       109 ag~c~L~lG  117 (157)
T PRK15363        109 AAECYLACD  117 (157)
T ss_pred             HHHHHHHcC
Confidence            998875543

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.91  E-value=8.1e-09  Score=110.30  Aligned_cols=129  Identities=20%  Similarity=0.228  Sum_probs=102.3

Q ss_pred             HhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhh-hhHHhhHHHHHHHHHHHHHHcCChHHHHHHH
Q 019054          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKS-SSLRKTKSQIFTNSSACKLKLGDLKGALLDT  287 (347)
Q Consensus       209 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~  287 (347)
                      ++.+..+..+|..+++.|++++|+..|+++++..+..     .....+ .-+......+...+|.++.+.|++++|+..|
T Consensus       300 P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~-----~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~  374 (1157)
T PRK11447        300 PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHS-----SNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLY  374 (1157)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----cchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            3456778889999999999999999999999832210     000000 0011112234456789999999999999999


Q ss_pred             HHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054          288 EFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (347)
Q Consensus       288 ~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  342 (347)
                      +++++++|++..+++.+|.++..+|++++|++.|+++++++|.+..+...+..+.
T Consensus       375 ~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~  429 (1157)
T PRK11447        375 QQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY  429 (1157)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998877776653

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.90  E-value=4.3e-09  Score=73.30  Aligned_cols=67  Identities=31%  Similarity=0.370  Sum_probs=62.1

Q ss_pred             HHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 019054          275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (347)
Q Consensus       275 ~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~  341 (347)
                      ++.|+|++|+..+++++..+|++..+++.+|.+|...|++++|...+++++..+|+++.+...++++
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i   68 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI   68 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence            5789999999999999999999999999999999999999999999999999999998888777653

...

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.90  E-value=2.3e-09  Score=73.99  Aligned_cols=64  Identities=20%  Similarity=0.259  Sum_probs=58.8

Q ss_pred             HcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC
Q 019054          217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD  296 (347)
Q Consensus       217 ~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~  296 (347)
                      .+|..+++.|+|++|+..|+++++                  ..|....++..+|.|+..+|++++|+..++++++++|+
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~------------------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~   63 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALK------------------QDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD   63 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHC------------------CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            467889999999999999999999                  88999999999999999999999999999999999998


Q ss_pred             Ch
Q 019054          297 NV  298 (347)
Q Consensus       297 ~~  298 (347)
                      ++
T Consensus        64 ~p   65 (65)
T PF13432_consen   64 NP   65 (65)
T ss_dssp             -H
T ss_pred             CC
Confidence            74

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.90  E-value=1.1e-08  Score=105.69  Aligned_cols=116  Identities=21%  Similarity=0.247  Sum_probs=101.8

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  291 (347)
                      ...+..+|..+...|++++|+..|++++.                  ..|....++.+++.++.++|+ .+|+..+++++
T Consensus       770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~------------------~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~  830 (899)
T TIGR02917       770 AVLRTALAELYLAQKDYDKAIKHYRTVVK------------------KAPDNAVVLNNLAWLYLELKD-PRALEYAEKAL  830 (899)
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHH
Confidence            45567778888888888888888888888                  677788889999999999999 88999999999


Q ss_pred             hcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       292 ~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      .+.|+++..+..+|.++..+|++++|+..|+++++++|.++.+...+..+..+.+
T Consensus       831 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g  885 (899)
T TIGR02917       831 KLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATG  885 (899)
T ss_pred             hhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999999999999988888766544

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.90  E-value=1.2e-08  Score=89.31  Aligned_cols=116  Identities=16%  Similarity=0.154  Sum_probs=96.7

Q ss_pred             HHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHH---HHHHHHHHHHHHc--------CChH
Q 019054          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKS---QIFTNSSACKLKL--------GDLK  281 (347)
Q Consensus       213 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~nla~~~~~l--------~~~~  281 (347)
                      ..+..+|..+++.|++++|+..|+++++                  ..|...   .+++.+|.++.++        ++++
T Consensus        71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~------------------~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~  132 (235)
T TIGR03302        71 QAQLDLAYAYYKSGDYAEAIAAADRFIR------------------LHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAR  132 (235)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHH------------------HCcCCCchHHHHHHHHHHHHHhcccccCCHHHHH
Confidence            5678899999999999999999999999                  444333   4788999999886        8899


Q ss_pred             HHHHHHHHHhhcCCCChhHH-----------------HHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHH
Q 019054          282 GALLDTEFAMRDGDDNVKAL-----------------FRQGQAYMALNDVDAAVESFEKALKLEPND---GGIKKELAVA  341 (347)
Q Consensus       282 ~A~~~~~~al~~~p~~~~a~-----------------~~~g~~~~~~~~~~~A~~~~~~al~l~P~~---~~~~~~l~~~  341 (347)
                      +|+..+++++..+|++..++                 +.+|..|..+|++++|+..|+++++..|++   +.++..++.+
T Consensus       133 ~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~  212 (235)
T TIGR03302       133 EAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEA  212 (235)
T ss_pred             HHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHH
Confidence            99999999999999985432                 467888999999999999999999998765   4677777777


Q ss_pred             HHHhc
Q 019054          342 KKKVS  346 (347)
Q Consensus       342 ~~~~~  346 (347)
                      ...++
T Consensus       213 ~~~lg  217 (235)
T TIGR03302       213 YLKLG  217 (235)
T ss_pred             HHHcC
Confidence            66554

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.90  E-value=1.6e-08  Score=79.75  Aligned_cols=112  Identities=16%  Similarity=0.194  Sum_probs=98.3

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+..+...|...++.|+|.+|++.++......+               ..+....+.+.++.+|++.++|++|+..+++-
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP---------------~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rF   73 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYP---------------FGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRF   73 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC---------------CCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            356788899999999999999999998887443               44555678999999999999999999999999


Q ss_pred             hhcCCCCh---hHHHHHHHHHHhcCC---------------HHHHHHHHHHHHhhCCCCHHHHHH
Q 019054          291 MRDGDDNV---KALFRQGQAYMALND---------------VDAAVESFEKALKLEPNDGGIKKE  337 (347)
Q Consensus       291 l~~~p~~~---~a~~~~g~~~~~~~~---------------~~~A~~~~~~al~l~P~~~~~~~~  337 (347)
                      |+++|.++   -++|.+|.+++.+..               ..+|..+|++.++..|+++.+...
T Consensus        74 irLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA  138 (142)
T PF13512_consen   74 IRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADA  138 (142)
T ss_pred             HHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHH
Confidence            99999985   589999999999887               889999999999999998876654

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.89  E-value=1.9e-08  Score=98.80  Aligned_cols=117  Identities=13%  Similarity=0.110  Sum_probs=105.5

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+..+...||.+|.+|++++|.+.+..+|+                  .+|....+|..+|.||..+|+.++|+...-.|
T Consensus       138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIk------------------qdp~~~~ay~tL~~IyEqrGd~eK~l~~~llA  199 (895)
T KOG2076|consen  138 ELRQLLGEANNLFARGDLEEAEEILMEVIK------------------QDPRNPIAYYTLGEIYEQRGDIEKALNFWLLA  199 (895)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH------------------hCccchhhHHHHHHHHHHcccHHHHHHHHHHH
Confidence            467889999999999999999999999999                  88999999999999999999999999999999


Q ss_pred             hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV  345 (347)
Q Consensus       291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  345 (347)
                      -.++|.+..-|.+++....++|++.+|.-+|.+|++++|.+.....+...+.++.
T Consensus       200 AHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~  254 (895)
T KOG2076|consen  200 AHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKT  254 (895)
T ss_pred             HhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999888777777666654

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.88  E-value=1.5e-08  Score=101.21  Aligned_cols=119  Identities=8%  Similarity=-0.013  Sum_probs=105.3

Q ss_pred             hHHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHH
Q 019054          205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGAL  284 (347)
Q Consensus       205 ~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~  284 (347)
                      .+..++.+.+....+..+.+.+++++|+..++++++                  ..|.+..+++.+|.+..++|+|++|+
T Consensus       113 ~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~------------------~~p~~~~~~~~~a~~l~~~g~~~~A~  174 (694)
T PRK15179        113 HQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS------------------GGSSSAREILLEAKSWDEIGQSEQAD  174 (694)
T ss_pred             HhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh------------------cCCCCHHHHHHHHHHHHHhcchHHHH
Confidence            344455677889999999999999999999999999                  99999999999999999999999999


Q ss_pred             HHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHH
Q 019054          285 LDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG-GIKKELAVA  341 (347)
Q Consensus       285 ~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~-~~~~~l~~~  341 (347)
                      ..|++++..+|++.+++..+|.++..+|+.++|...|++|+.+...-. .....+..+
T Consensus       175 ~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  232 (694)
T PRK15179        175 ACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLVDL  232 (694)
T ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999976433 333344433

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.88  E-value=1.3e-08  Score=108.68  Aligned_cols=131  Identities=15%  Similarity=0.087  Sum_probs=101.2

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccc--------cCCCChhhhh----------------hHHhhHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE--------KEGIDEGKSS----------------SLRKTKSQI  266 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~--------~~~~~~~~~~----------------~~~~~~~~~  266 (347)
                      .+..+..+|..+...|++++|++.|+++++.-+....        ......++..                .........
T Consensus       384 ~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~  463 (1157)
T PRK11447        384 DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDR  463 (1157)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhH
Confidence            4556788999999999999999999999985432100        0000000000                011122345


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 019054          267 FTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (347)
Q Consensus       267 ~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~  341 (347)
                      +..+|.++...|++++|+..++++++++|+++.+++.+|.+|..+|++++|+..|+++++++|.++.+...+...
T Consensus       464 ~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~  538 (1157)
T PRK11447        464 LAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLY  538 (1157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            677899999999999999999999999999999999999999999999999999999999999999877655443

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.87  E-value=1.7e-08  Score=104.31  Aligned_cols=115  Identities=19%  Similarity=0.250  Sum_probs=100.7

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+..+...|..++..|+|++|+..|+++++                  ..|....++..+|.+++..|++++|+..++++
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  185 (899)
T TIGR02917       124 AAELLALRGLAYLGLGQLELAQKSYEQALA------------------IDPRSLYAKLGLAQLALAENRFDEARALIDEV  185 (899)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------cCCCChhhHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            466788899999999999999999999998                  66777788889999999999999999999999


Q ss_pred             hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 019054          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK  343 (347)
Q Consensus       291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  343 (347)
                      +..+|.+..+++.+|.++...|++++|+..|+++++++|.+..+...+..+..
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~  238 (899)
T TIGR02917       186 LTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILI  238 (899)
T ss_pred             HHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999988887776666543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=2.3e-08  Score=87.79  Aligned_cols=119  Identities=19%  Similarity=0.137  Sum_probs=105.4

Q ss_pred             hHHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcC---ChH
Q 019054          205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG---DLK  281 (347)
Q Consensus       205 ~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~---~~~  281 (347)
                      +...++.++-+.-+|..++..|++..|...|.+|++                  +.+.++.++..+|.+++...   .-.
T Consensus       149 L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r------------------L~g~n~~~~~g~aeaL~~~a~~~~ta  210 (287)
T COG4235         149 LQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALR------------------LAGDNPEILLGLAEALYYQAGQQMTA  210 (287)
T ss_pred             HHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHhcCCcccH
Confidence            333455677889999999999999999999999999                  89999999999999988764   367


Q ss_pred             HHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 019054          282 GALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (347)
Q Consensus       282 ~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~  341 (347)
                      ++...+++|+.+||.+..+++.+|..++..|+|.+|+..++..+.+.|.+..-+..+...
T Consensus       211 ~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~  270 (287)
T COG4235         211 KARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERS  270 (287)
T ss_pred             HHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence            899999999999999999999999999999999999999999999999877655555444

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.85  E-value=2.5e-08  Score=81.11  Aligned_cols=99  Identities=27%  Similarity=0.333  Sum_probs=81.6

Q ss_pred             hHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCC----------hHHHHHHHHHHhhcCCC
Q 019054          227 DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD----------LKGALLDTEFAMRDGDD  296 (347)
Q Consensus       227 ~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~----------~~~A~~~~~~al~~~p~  296 (347)
                      -|+.|.+.|+....                  .+|.++..++|-|.+++.+.+          +++|+.-+++||.++|+
T Consensus         6 ~FE~ark~aea~y~------------------~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~   67 (186)
T PF06552_consen    6 FFEHARKKAEAAYA------------------KNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPN   67 (186)
T ss_dssp             HHHHHHHHHHHHHH------------------H-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred             HHHHHHHHHHHHHH------------------hCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCc
Confidence            47788888888887                  899999999999999888743          56788999999999999


Q ss_pred             ChhHHHHHHHHHHhcCC-----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 019054          297 NVKALFRQGQAYMALND-----------VDAAVESFEKALKLEPNDGGIKKELAVAKK  343 (347)
Q Consensus       297 ~~~a~~~~g~~~~~~~~-----------~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  343 (347)
                      ...|++.+|.+|..++.           |++|..+|++|...+|++..++..|..+.+
T Consensus        68 ~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~k  125 (186)
T PF06552_consen   68 KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAK  125 (186)
T ss_dssp             -HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Confidence            99999999999988665           888999999999999999999999988764

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.84  E-value=3.8e-08  Score=92.77  Aligned_cols=99  Identities=19%  Similarity=0.161  Sum_probs=52.0

Q ss_pred             HHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC
Q 019054          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (347)
Q Consensus       215 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~  294 (347)
                      +..+|..+.+.|++++|+..|.++++                  ..|....++..+|.++.+.|++++|+..+++++..+
T Consensus       183 ~~~la~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  244 (389)
T PRK11788        183 YCELAQQALARGDLDAARALLKKALA------------------ADPQCVRASILLGDLALAQGDYAAAIEALERVEEQD  244 (389)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHh------------------HCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence            34455555556666666666666655                  333344445555555555555555555555555554


Q ss_pred             CCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 019054          295 DDN-VKALFRQGQAYMALNDVDAAVESFEKALKLEPND  331 (347)
Q Consensus       295 p~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  331 (347)
                      |.+ ..++..++.+|...|++++|+..++++++..|+.
T Consensus       245 p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~  282 (389)
T PRK11788        245 PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA  282 (389)
T ss_pred             hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence            443 2334445555555555555555555555555543

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.84  E-value=3.6e-08  Score=92.97  Aligned_cols=82  Identities=21%  Similarity=0.234  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHH
Q 019054          264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG-GIKKELAVAK  342 (347)
Q Consensus       264 ~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~-~~~~~l~~~~  342 (347)
                      ...+.++|.++.+.+++++|+..++++++.+|++..+++.+|.++...|++++|++.|+++++.+|.+. .+...+..+.
T Consensus       180 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~  259 (389)
T PRK11788        180 AHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECY  259 (389)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHH
Confidence            345778888899999999999999999999999899999999999999999999999999999888753 4455565554


Q ss_pred             HHh
Q 019054          343 KKV  345 (347)
Q Consensus       343 ~~~  345 (347)
                      ...
T Consensus       260 ~~~  262 (389)
T PRK11788        260 QAL  262 (389)
T ss_pred             HHc
Confidence            443

>PLN02789 farnesyltranstransferase

Probab=98.83  E-value=6.3e-08  Score=88.39  Aligned_cols=106  Identities=16%  Similarity=0.093  Sum_probs=96.8

Q ss_pred             ccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcC-ChHHHHHHHHHHhhcCCCChhH
Q 019054          222 HYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-DLKGALLDTEFAMRDGDDNVKA  300 (347)
Q Consensus       222 ~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-~~~~A~~~~~~al~~~p~~~~a  300 (347)
                      +...+++++|+..+.++|.                  ++|....+|..++.++.+++ ++++++..++++++.+|.+..+
T Consensus        47 l~~~e~serAL~lt~~aI~------------------lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqa  108 (320)
T PLN02789         47 YASDERSPRALDLTADVIR------------------LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQI  108 (320)
T ss_pred             HHcCCCCHHHHHHHHHHHH------------------HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHH
Confidence            4456789999999999999                  99999999999999999998 6899999999999999999999


Q ss_pred             HHHHHHHHHhcCCH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054          301 LFRQGQAYMALNDV--DAAVESFEKALKLEPNDGGIKKELAVAKKKV  345 (347)
Q Consensus       301 ~~~~g~~~~~~~~~--~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  345 (347)
                      |+.++.++..+++.  ++++..++++++++|.|-.++...+.+...+
T Consensus       109 W~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l  155 (320)
T PLN02789        109 WHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTL  155 (320)
T ss_pred             hHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence            99999999999874  7889999999999999999988777776554

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.82  E-value=1.2e-08  Score=94.62  Aligned_cols=69  Identities=16%  Similarity=0.119  Sum_probs=66.8

Q ss_pred             HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhH---HHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019054          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA---LFRQGQAYMALNDVDAAVESFEKALKL  327 (347)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a---~~~~g~~~~~~~~~~~A~~~~~~al~l  327 (347)
                      .+|..+.+++|+|.+|+++|+|++|+..|++||+++|++..+   ||++|.+|..+|++++|+++|++|+++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            788999999999999999999999999999999999999865   999999999999999999999999998

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.79  E-value=5e-08  Score=99.95  Aligned_cols=108  Identities=12%  Similarity=0.032  Sum_probs=100.5

Q ss_pred             HHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 019054          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (347)
Q Consensus       213 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  292 (347)
                      ..+...|..+...|++++|++.+++++.                  ..|.+..++.++|.++..+|++++|+..+++++.
T Consensus       360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~------------------~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~  421 (765)
T PRK10049        360 QGQSLLSQVAKYSNDLPQAEMRARELAY------------------NAPGNQGLRIDYASVLQARGWPRAAENELKKAEV  421 (765)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence            3456778888899999999999999999                  8888899999999999999999999999999999


Q ss_pred             cCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 019054          293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (347)
Q Consensus       293 ~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l  338 (347)
                      ++|++..+++.+|.++..+++|++|...++++++..|+++.+...-
T Consensus       422 l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~  467 (765)
T PRK10049        422 LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLA  467 (765)
T ss_pred             hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            9999999999999999999999999999999999999999766543

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.78  E-value=7.5e-08  Score=79.92  Aligned_cols=110  Identities=16%  Similarity=0.142  Sum_probs=90.7

Q ss_pred             cCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC
Q 019054          218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN  297 (347)
Q Consensus       218 ~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~  297 (347)
                      ..+.+|-...|..+...+.+.++.                ........+++++|.++..++++++|+..+++++.+.|+.
T Consensus         5 ~~~~~~~~~~~~~~~~~l~~~~~~----------------~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~   68 (168)
T CHL00033          5 QRNDNFIDKTFTIVADILLRILPT----------------TSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP   68 (168)
T ss_pred             cccccccccccccchhhhhHhccC----------------CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccc
Confidence            345566666777777777555441                1344567889999999999999999999999999987763


Q ss_pred             ---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 019054          298 ---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK  343 (347)
Q Consensus       298 ---~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  343 (347)
                         +.+++++|.++..+|++++|+..|+++++++|........++.+..
T Consensus        69 ~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~  117 (168)
T CHL00033         69 YDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICH  117 (168)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence               4589999999999999999999999999999999988888877766

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.78  E-value=3.1e-08  Score=95.90  Aligned_cols=105  Identities=24%  Similarity=0.180  Sum_probs=98.5

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHH--HHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALL--DTE  288 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~--~~~  288 (347)
                      .+..++..|..+..+|+..+|.+.|..|+.                  ++|....+...+|.|+++.|+..-|..  ...
T Consensus       683 ~~~~~~~~G~~~~~~~~~~EA~~af~~Al~------------------ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~  744 (799)
T KOG4162|consen  683 SASVYYLRGLLLEVKGQLEEAKEAFLVALA------------------LDPDHVPSMTALAELLLELGSPRLAEKRSLLS  744 (799)
T ss_pred             hHHHHHHhhHHHHHHHhhHHHHHHHHHHHh------------------cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHH
Confidence            355678889999999999999999999999                  999999999999999999999888888  999


Q ss_pred             HHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 019054          289 FAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG  333 (347)
Q Consensus       289 ~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~  333 (347)
                      .|+++||.+.++||.+|.++..+|+.++|.++|+.|++|++.+|.
T Consensus       745 dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  745 DALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             HHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence            999999999999999999999999999999999999999998875

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.78  E-value=6e-08  Score=83.07  Aligned_cols=120  Identities=22%  Similarity=0.236  Sum_probs=94.9

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+..++..|..++..|+|.+|+..|++.+...+               ..+....+.+.+|.++.+.++|..|+..+++.
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P---------------~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~f   68 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYP---------------NSPYAPQAQLMLAYAYYKQGDYEEAIAAYERF   68 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-T---------------TSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC---------------CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            467889999999999999999999999998543               34566788999999999999999999999999


Q ss_pred             hhcCCCCh---hHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHh
Q 019054          291 MRDGDDNV---KALFRQGQAYMALN-----------DVDAAVESFEKALKLEPNDGG---IKKELAVAKKKV  345 (347)
Q Consensus       291 l~~~p~~~---~a~~~~g~~~~~~~-----------~~~~A~~~~~~al~l~P~~~~---~~~~l~~~~~~~  345 (347)
                      ++..|++.   .++|.+|.+++.+.           ...+|+..|+..++..|+++-   +...|..+...+
T Consensus        69 i~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~l  140 (203)
T PF13525_consen   69 IKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRL  140 (203)
T ss_dssp             HHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHH
T ss_pred             HHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHH
Confidence            99999874   68999999977653           345899999999999998765   445555665554

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.78  E-value=4.1e-08  Score=85.86  Aligned_cols=83  Identities=20%  Similarity=0.207  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (347)
Q Consensus       263 ~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  342 (347)
                      .+.-+-+-|.-.++.++|++|+..|++||+++|.|+-.|.+||.+|.++|.|+.|+++++.|+.++|+...++..|..++
T Consensus        80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~  159 (304)
T KOG0553|consen   80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAY  159 (304)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence            34456677888999999999999999999999999999999999999999999999999999999999999999888876


Q ss_pred             HHh
Q 019054          343 KKV  345 (347)
Q Consensus       343 ~~~  345 (347)
                      -.+
T Consensus       160 ~~~  162 (304)
T KOG0553|consen  160 LAL  162 (304)
T ss_pred             Hcc
Confidence            544

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.77  E-value=1.8e-08  Score=88.73  Aligned_cols=87  Identities=18%  Similarity=0.278  Sum_probs=78.9

Q ss_pred             HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 019054          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD--D-NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIK  335 (347)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p--~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~  335 (347)
                      +.-..+.+++|+|.|++..++++-++..+++|+....  + -+..||++|.+....|++..|.++|+-|+.-+|++.++.
T Consensus       353 mG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~eal  432 (478)
T KOG1129|consen  353 MGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEAL  432 (478)
T ss_pred             hcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHH
Confidence            5666778999999999999999999999999997653  2 378899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 019054          336 KELAVAKKKV  345 (347)
Q Consensus       336 ~~l~~~~~~~  345 (347)
                      ++|+.++.+.
T Consensus       433 nNLavL~~r~  442 (478)
T KOG1129|consen  433 NNLAVLAARS  442 (478)
T ss_pred             HhHHHHHhhc
Confidence            9999987654

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.75  E-value=2.5e-08  Score=71.50  Aligned_cols=68  Identities=28%  Similarity=0.358  Sum_probs=59.2

Q ss_pred             hhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC----CC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 019054          261 KTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG----DD---NVKALFRQGQAYMALNDVDAAVESFEKALKLE  328 (347)
Q Consensus       261 ~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~----p~---~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~  328 (347)
                      |..+.++.++|.+|..+|+|++|+.++++++.+.    ++   -+.+++++|.++..+|++++|++.+++|+++.
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            5667899999999999999999999999999652    22   26789999999999999999999999999863

...

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.75  E-value=6.1e-08  Score=87.90  Aligned_cols=127  Identities=18%  Similarity=0.167  Sum_probs=105.4

Q ss_pred             hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (347)
Q Consensus       210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~  289 (347)
                      ..+.+++..|..++-..+-+.|+.+|+++|++-+      .-.......+.+.....+.+.|.-.++.|+|.+|-+.|+.
T Consensus       201 ~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldp------dh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yte  274 (486)
T KOG0550|consen  201 TNAEALYVRGLCLYYNDNADKAINHFQQALRLDP------DHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTE  274 (486)
T ss_pred             chhHHHHhcccccccccchHHHHHHHhhhhccCh------hhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHH
Confidence            3578899999999999999999999999999432      1122223346677778899999999999999999999999


Q ss_pred             HhhcCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054          290 AMRDGDDN----VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (347)
Q Consensus       290 al~~~p~~----~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  342 (347)
                      ||.++|++    ++.|++||.++..+|+.++|+.++..|++|+|.--.+....+.+.
T Consensus       275 al~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~  331 (486)
T KOG0550|consen  275 ALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCH  331 (486)
T ss_pred             hhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence            99999987    688999999999999999999999999999986544444444443

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.75  E-value=2.5e-08  Score=69.41  Aligned_cols=67  Identities=24%  Similarity=0.192  Sum_probs=60.8

Q ss_pred             ccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHH
Q 019054          222 HYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKAL  301 (347)
Q Consensus       222 ~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~  301 (347)
                      +++.|+|++|+..|++++.                  ..|.+..++..+|.||++.|++++|...+++++..+|+++..+
T Consensus         1 ll~~~~~~~A~~~~~~~l~------------------~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~   62 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQ------------------RNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ   62 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHH------------------HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence            3578999999999999999                  8999999999999999999999999999999999999988777


Q ss_pred             HHHHH
Q 019054          302 FRQGQ  306 (347)
Q Consensus       302 ~~~g~  306 (347)
                      ..++.
T Consensus        63 ~l~a~   67 (68)
T PF14559_consen   63 QLLAQ   67 (68)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            76664

...

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.75  E-value=1.2e-07  Score=83.38  Aligned_cols=120  Identities=20%  Similarity=0.195  Sum_probs=96.2

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+..++..|..+++.|+|++|++.|++.+...+               ..+....+.+++|.+|+++++|++|+..+++.
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP---------------~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~f   95 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYP---------------FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRF   95 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---------------CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            355678889999999999999999999998332               23445556799999999999999999999999


Q ss_pred             hhcCCCC---hhHHHHHHHHHHhcC---------------C---HHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHh
Q 019054          291 MRDGDDN---VKALFRQGQAYMALN---------------D---VDAAVESFEKALKLEPNDGG---IKKELAVAKKKV  345 (347)
Q Consensus       291 l~~~p~~---~~a~~~~g~~~~~~~---------------~---~~~A~~~~~~al~l~P~~~~---~~~~l~~~~~~~  345 (347)
                      ++.+|++   ..++|.+|.++..++               +   -.+|+..|++.++..|+.+-   +...|..++.++
T Consensus        96 i~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~l  174 (243)
T PRK10866         96 IRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRL  174 (243)
T ss_pred             HHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHH
Confidence            9999987   568999999875554               1   25788999999999998654   555555555554

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.73  E-value=1.1e-07  Score=82.53  Aligned_cols=114  Identities=16%  Similarity=0.176  Sum_probs=100.3

Q ss_pred             HHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 019054          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (347)
Q Consensus       213 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  292 (347)
                      ..+++.|-.+++.|+|..|...|...++..+               ..+..+.+++.||.+++.+|+|+.|...|..+++
T Consensus       142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP---------------~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k  206 (262)
T COG1729         142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYP---------------NSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVK  206 (262)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---------------CCcccchhHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            4478888899999999999999999998443               3445668899999999999999999999999999


Q ss_pred             cCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 019054          293 DGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (347)
Q Consensus       293 ~~p~~---~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~  341 (347)
                      -.|++   +.+++.+|.+...+|+.++|...|++.++-.|..+.+...-..+
T Consensus       207 ~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~  258 (262)
T COG1729         207 DYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVAL  258 (262)
T ss_pred             hCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            88877   56799999999999999999999999999999988777665544

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.71  E-value=1.4e-07  Score=68.49  Aligned_cols=79  Identities=33%  Similarity=0.413  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054          266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (347)
Q Consensus       266 ~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  344 (347)
                      +++++|.++...|++++|+..++++++..|.+..+++.+|.++...+++++|+..|++++++.|.+..+...++.+...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK   80 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence            5788999999999999999999999999999999999999999999999999999999999999998777777665543

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.71  E-value=1.7e-07  Score=72.72  Aligned_cols=99  Identities=20%  Similarity=0.116  Sum_probs=86.2

Q ss_pred             HHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 019054          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (347)
Q Consensus       213 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  292 (347)
                      ..+++.|..+-..|+.++|+..|++++..-               -..+....++..+|.++..+|++++|+..+++++.
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~g---------------L~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~   66 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAG---------------LSGADRRRALIQLASTLRNLGRYDEALALLEEALE   66 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------------CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            456788888999999999999999999821               02445567999999999999999999999999999


Q ss_pred             cCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 019054          293 DGDD---NVKALFRQGQAYMALNDVDAAVESFEKALK  326 (347)
Q Consensus       293 ~~p~---~~~a~~~~g~~~~~~~~~~~A~~~~~~al~  326 (347)
                      ..|+   +......++.++..+|++++|+..+..++.
T Consensus        67 ~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   67 EFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            9888   778888899999999999999999987775

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.69  E-value=7.9e-08  Score=89.55  Aligned_cols=117  Identities=21%  Similarity=0.164  Sum_probs=103.9

Q ss_pred             hHHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHc---CChH
Q 019054          205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL---GDLK  281 (347)
Q Consensus       205 ~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l---~~~~  281 (347)
                      .-++++.++.++..||..|-.+....|+..|.+++.                  ..+....+|.|+|.++++.   ++.-
T Consensus       367 ~~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q------------------~~~~~~~~l~nraa~lmkRkW~~d~~  428 (758)
T KOG1310|consen  367 FYELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQ------------------YVPDAIYLLENRAAALMKRKWRGDSY  428 (758)
T ss_pred             hhhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhh------------------hccchhHHHHhHHHHHHhhhccccHH
Confidence            445666788999999999999999999999999999                  7788899999999999985   6788


Q ss_pred             HHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 019054          282 GALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELA  339 (347)
Q Consensus       282 ~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~  339 (347)
                      .|+.+|..|++++|...|||++++.++..++++.+|+.+...+....|.+........
T Consensus       429 ~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~~~v~  486 (758)
T KOG1310|consen  429 LALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVARQNFVL  486 (758)
T ss_pred             HHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhhhhhh
Confidence            9999999999999999999999999999999999999998888888886665544433

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.68  E-value=1.5e-07  Score=80.86  Aligned_cols=107  Identities=20%  Similarity=0.254  Sum_probs=87.8

Q ss_pred             cCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC
Q 019054          218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN  297 (347)
Q Consensus       218 ~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~  297 (347)
                      .++.++..|+-+.+.....+++.                  ..+....++.-.|......|+|.+|+..+.+|..++|++
T Consensus        72 ~a~a~~~~G~a~~~l~~~~~~~~------------------~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d  133 (257)
T COG5010          72 LATALYLRGDADSSLAVLQKSAI------------------AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTD  133 (257)
T ss_pred             HHHHHHhcccccchHHHHhhhhc------------------cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCC
Confidence            44444445555555555555443                  344455566668999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054          298 VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (347)
Q Consensus       298 ~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  342 (347)
                      +++|.-+|.+|.++|++++|...|.+++++.|+++.+..+|+-..
T Consensus       134 ~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~  178 (257)
T COG5010         134 WEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSL  178 (257)
T ss_pred             hhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHH
Confidence            999999999999999999999999999999999999999987654

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.68  E-value=7.4e-08  Score=68.98  Aligned_cols=74  Identities=20%  Similarity=0.210  Sum_probs=62.1

Q ss_pred             hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (347)
Q Consensus       210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~  289 (347)
                      ..+..+.++|..++..|+|++|+.+|++++++....           ....+..+.++.++|.|+..+|++++|+.++++
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-----------~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~   71 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQL-----------GDDHPDTANTLNNLGECYYRLGDYEEALEYYQK   71 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-----------TTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH-----------CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            467889999999999999999999999999963222           113456789999999999999999999999999


Q ss_pred             HhhcC
Q 019054          290 AMRDG  294 (347)
Q Consensus       290 al~~~  294 (347)
                      |+++.
T Consensus        72 al~i~   76 (78)
T PF13424_consen   72 ALDIF   76 (78)
T ss_dssp             HHHHH
T ss_pred             HHhhh
Confidence            99763

...

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.68  E-value=1.7e-07  Score=87.23  Aligned_cols=80  Identities=19%  Similarity=0.134  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          267 FTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       267 ~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      +...|..++..++|++|+..|++||+++|+++.+|+.+|.+|..+|++++|+.+++++++++|.+..++..++.+...++
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            55678889999999999999999999999999999999999999999999999999999999999999999988876654

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.67  E-value=1.4e-07  Score=76.26  Aligned_cols=98  Identities=23%  Similarity=0.210  Sum_probs=81.6

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  291 (347)
                      ..+...+|..++..|+|++|+..|++++...               ........+.+++|.+++.+|+|++|+..++. +
T Consensus        48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~---------------~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~  111 (145)
T PF09976_consen   48 ALAALQLAKAAYEQGDYDEAKAALEKALANA---------------PDPELKPLARLRLARILLQQGQYDEALATLQQ-I  111 (145)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---------------CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-c
Confidence            4567788999999999999999999999821               02344567889999999999999999999966 3


Q ss_pred             hcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 019054          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKAL  325 (347)
Q Consensus       292 ~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al  325 (347)
                      .-.+-.+.++..+|.+|...|++++|+..|++|+
T Consensus       112 ~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  112 PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            4444557788999999999999999999999875

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.67  E-value=2.9e-07  Score=76.73  Aligned_cols=87  Identities=22%  Similarity=0.310  Sum_probs=77.1

Q ss_pred             HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 019054          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIK  335 (347)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~---~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~  335 (347)
                      ..+....+++++|.++...|++++|+.+|++++.+.|+.   +.+++.+|.++..+|++++|+..|++++++.|.+....
T Consensus        30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  109 (172)
T PRK02603         30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSAL  109 (172)
T ss_pred             cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Confidence            456777889999999999999999999999999887654   57999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHh
Q 019054          336 KELAVAKKKV  345 (347)
Q Consensus       336 ~~l~~~~~~~  345 (347)
                      ..++.+...+
T Consensus       110 ~~lg~~~~~~  119 (172)
T PRK02603        110 NNIAVIYHKR  119 (172)
T ss_pred             HHHHHHHHHc
Confidence            7777765443

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.67  E-value=1.7e-07  Score=95.44  Aligned_cols=111  Identities=13%  Similarity=0.023  Sum_probs=72.5

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  291 (347)
                      +...+..+...++.|+|..|+..|.++++                  .+|....+...++.++..+|++++|+.+|++++
T Consensus        34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~------------------~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~   95 (822)
T PRK14574         34 ADTQYDSLIIRARAGDTAPVLDYLQEESK------------------AGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ   95 (822)
T ss_pred             hhHHHHHHHHHHhCCCHHHHHHHHHHHHh------------------hCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc
Confidence            44667888889999999999999999998                  555553232355666666666666666666666


Q ss_pred             hcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 019054          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAV  340 (347)
Q Consensus       292 ~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~  340 (347)
                      .-.|.+..++..+|.+|..+|+|++|++.|+++++++|+++.+...+..
T Consensus        96 ~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~  144 (822)
T PRK14574         96 SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIM  144 (822)
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence            2223333333334556666666666666666666666666666655443

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.66  E-value=1.4e-07  Score=78.76  Aligned_cols=113  Identities=14%  Similarity=0.050  Sum_probs=104.4

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .|.-+++.|+.|-..|-+.-|.--|.+++.                  +.|..+.+++-+|..+...|+|+.|.+.++.+
T Consensus        64 RA~l~fERGvlYDSlGL~~LAR~DftQaLa------------------i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~  125 (297)
T COG4785          64 RAQLLFERGVLYDSLGLRALARNDFSQALA------------------IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSV  125 (297)
T ss_pred             HHHHHHHhcchhhhhhHHHHHhhhhhhhhh------------------cCCCcHHHHHHHHHHHHhcccchHHHHHhhhH
Confidence            678899999999999999999999999999                  99999999999999999999999999999999


Q ss_pred             hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 019054          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (347)
Q Consensus       291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~  341 (347)
                      +++||.+--++.+||.+++--|+|.-|.+++.+-.+-+|+||--.-.|-..
T Consensus       126 ~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~  176 (297)
T COG4785         126 LELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN  176 (297)
T ss_pred             hccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence            999999999999999999999999999999999999999998644433333

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.65  E-value=2.6e-07  Score=85.66  Aligned_cols=115  Identities=15%  Similarity=0.085  Sum_probs=95.4

Q ss_pred             HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (347)
Q Consensus       214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  293 (347)
                      ..+-.+...+..|+++.|...+...++                  ..|.++.++..++.++++.++..+|++.+++++.+
T Consensus       308 a~YG~A~~~~~~~~~d~A~~~l~~L~~------------------~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l  369 (484)
T COG4783         308 AQYGRALQTYLAGQYDEALKLLQPLIA------------------AQPDNPYYLELAGDILLEANKAKEAIERLKKALAL  369 (484)
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence            344455555666666666666666666                  67788888888999999999999999999999999


Q ss_pred             CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       294 ~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      +|...-..+.+|.+|...|++.+|+..+++.+.-+|+|+..+..|+++...++
T Consensus       370 ~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g  422 (484)
T COG4783         370 DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELG  422 (484)
T ss_pred             CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhC
Confidence            99998899999999999999999999999999999999999999988876654

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.65  E-value=7e-08  Score=68.11  Aligned_cols=70  Identities=24%  Similarity=0.347  Sum_probs=64.1

Q ss_pred             CccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCh
Q 019054          219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNV  298 (347)
Q Consensus       219 g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~  298 (347)
                      ...+++.++|++|++.+++++.                  ..|..+.++..+|.|+.++|++++|+.+++++++..|++.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~------------------~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~   63 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALE------------------LDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP   63 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHH------------------hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence            3567899999999999999999                  8999999999999999999999999999999999999998


Q ss_pred             hHHHHHHH
Q 019054          299 KALFRQGQ  306 (347)
Q Consensus       299 ~a~~~~g~  306 (347)
                      .+...++.
T Consensus        64 ~~~~~~a~   71 (73)
T PF13371_consen   64 DARALRAM   71 (73)
T ss_pred             HHHHHHHh
Confidence            87766553

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.64  E-value=3.1e-07  Score=85.20  Aligned_cols=113  Identities=19%  Similarity=0.135  Sum_probs=101.9

Q ss_pred             HHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC
Q 019054          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (347)
Q Consensus       215 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~  294 (347)
                      +-..+..+++.++.++|++.+++++.                  +.|....+..|+|.++++.|++.+|+..++..+.-+
T Consensus       343 ~~~~~~i~~~~nk~~~A~e~~~kal~------------------l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~  404 (484)
T COG4783         343 LELAGDILLEANKAKEAIERLKKALA------------------LDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND  404 (484)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHh------------------cCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Confidence            34567788899999999999999999                  889999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054          295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV  345 (347)
Q Consensus       295 p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  345 (347)
                      |+++..|..+|++|..+|+-.+|...+.+.+.+...-.++...+..++++.
T Consensus       405 p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~  455 (484)
T COG4783         405 PEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQV  455 (484)
T ss_pred             CCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999988887777777777666654

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.62  E-value=5.1e-07  Score=69.75  Aligned_cols=81  Identities=19%  Similarity=0.264  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHHH
Q 019054          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPND---GGIKKEL  338 (347)
Q Consensus       265 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~---~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~---~~~~~~l  338 (347)
                      ..++++|..+.+.|++++|+..|.+++..+|++   ..+++.+|.++...+++++|+..|++++..+|++   ..++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~   82 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL   82 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence            568899999999999999999999999999876   6799999999999999999999999999999985   4566666


Q ss_pred             HHHHHHh
Q 019054          339 AVAKKKV  345 (347)
Q Consensus       339 ~~~~~~~  345 (347)
                      +.+...+
T Consensus        83 ~~~~~~~   89 (119)
T TIGR02795        83 GMSLQEL   89 (119)
T ss_pred             HHHHHHh
Confidence            6665543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.61  E-value=1.5e-07  Score=90.81  Aligned_cols=109  Identities=16%  Similarity=0.165  Sum_probs=100.6

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+.+.+..|+..+..++|++|..+++.+++                  ++|.....|+++|.|++++++++.|..+|..+
T Consensus       484 sarA~r~~~~~~~~~~~fs~~~~hle~sl~------------------~nplq~~~wf~~G~~ALqlek~q~av~aF~rc  545 (777)
T KOG1128|consen  484 SARAQRSLALLILSNKDFSEADKHLERSLE------------------INPLQLGTWFGLGCAALQLEKEQAAVKAFHRC  545 (777)
T ss_pred             hHHHHHhhccccccchhHHHHHHHHHHHhh------------------cCccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence            456778888889999999999999999999                  99999999999999999999999999999999


Q ss_pred             hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 019054          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKE  337 (347)
Q Consensus       291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~  337 (347)
                      +.++|++..+|.+++.+|..+++-.+|...+++|++.+-++..++.+
T Consensus       546 vtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWEN  592 (777)
T KOG1128|consen  546 VTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWEN  592 (777)
T ss_pred             hhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeec
Confidence            99999999999999999999999999999999999998666555544

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.60  E-value=1.2e-07  Score=93.99  Aligned_cols=112  Identities=19%  Similarity=0.245  Sum_probs=96.8

Q ss_pred             HcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--
Q 019054          217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG--  294 (347)
Q Consensus       217 ~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~--  294 (347)
                      -+|-++-.+|++.+|+..|.+..+                  .......+|.|+|.||+.+|+|..|++.|+.+++..  
T Consensus       651 GIgiVLA~kg~~~~A~dIFsqVrE------------------a~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~  712 (1018)
T KOG2002|consen  651 GIGIVLAEKGRFSEARDIFSQVRE------------------ATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYK  712 (1018)
T ss_pred             chhhhhhhccCchHHHHHHHHHHH------------------HHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            356666777777777777777766                  444567899999999999999999999999999753  


Q ss_pred             CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       295 p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      .++...+..+|.+++..+.+.+|.+.+.+|+.+.|.++.+..+++.+.+++.
T Consensus       713 ~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla  764 (1018)
T KOG2002|consen  713 KNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLA  764 (1018)
T ss_pred             cCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999999998887653

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.59  E-value=1.8e-07  Score=84.33  Aligned_cols=118  Identities=21%  Similarity=0.182  Sum_probs=90.4

Q ss_pred             HHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 019054          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (347)
Q Consensus       213 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  292 (347)
                      ..+......+...++++++...++++....                ..+....+|..+|.++.+.|++++|+..+++|++
T Consensus       111 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~  174 (280)
T PF13429_consen  111 RYLLSALQLYYRLGDYDEAEELLEKLEELP----------------AAPDSARFWLALAEIYEQLGDPDKALRDYRKALE  174 (280)
T ss_dssp             -------H-HHHTT-HHHHHHHHHHHHH-T-------------------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHhHHHHHHHHHHHHHhcc----------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            334455566778889999999988876511                2246678899999999999999999999999999


Q ss_pred             cCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       293 ~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      ++|++..++..++.++...|++++|.+.++...+..|.++.++..++.+...++
T Consensus       175 ~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg  228 (280)
T PF13429_consen  175 LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLG  228 (280)
T ss_dssp             H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT
T ss_pred             cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccc
Confidence            999999999999999999999999999999998888999888888888776654

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.55  E-value=4.8e-07  Score=85.40  Aligned_cols=74  Identities=12%  Similarity=0.102  Sum_probs=57.7

Q ss_pred             HHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC
Q 019054          216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD  295 (347)
Q Consensus       216 ~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p  295 (347)
                      +..|..+++.|+..+|+-.|+.|+.                  .+|..+.+|..||.++...++-..||..+.++++++|
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVk------------------qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP  350 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVK------------------QDPQHAEAWQKLGITQAENENEQNAISALRRCLELDP  350 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHh------------------hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC
Confidence            5678889999999999999999998                  7777777777777777777777777777777777777


Q ss_pred             CChhHHHHHHHH
Q 019054          296 DNVKALFRQGQA  307 (347)
Q Consensus       296 ~~~~a~~~~g~~  307 (347)
                      +|-+++..+|.+
T Consensus       351 ~NleaLmaLAVS  362 (579)
T KOG1125|consen  351 TNLEALMALAVS  362 (579)
T ss_pred             ccHHHHHHHHHH
Confidence            765544444443

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.55  E-value=5.1e-07  Score=89.69  Aligned_cols=118  Identities=24%  Similarity=0.292  Sum_probs=106.5

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+..+..+++-+|-+|+|+.+...+..++....               ..+..+..++.+|.+|-.+|+|++|-.+|.++
T Consensus       269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~---------------~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s  333 (1018)
T KOG2002|consen  269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTE---------------NKSIKAESFYQLGRSYHAQGDFEKAFKYYMES  333 (1018)
T ss_pred             CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh---------------hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            466788899999999999999999999998431               45667778999999999999999999999999


Q ss_pred             hhcCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 019054          291 MRDGDDN-VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK  343 (347)
Q Consensus       291 l~~~p~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  343 (347)
                      +..+|++ .-+++.+|+.|...|+++.|+.+|++.++..|++.+....|+.+..
T Consensus       334 ~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya  387 (1018)
T KOG2002|consen  334 LKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYA  387 (1018)
T ss_pred             HccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHH
Confidence            9999998 8999999999999999999999999999999999999888877653

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.53  E-value=2.7e-07  Score=85.85  Aligned_cols=66  Identities=23%  Similarity=0.256  Sum_probs=61.7

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHH---HHHHHHHHHHHcCChHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQ---IFTNSSACKLKLGDLKGALLDT  287 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~nla~~~~~l~~~~~A~~~~  287 (347)
                      .+..+.++|..+++.|+|++|+..|++||+                  ++|....   +|+|+|.||.++|++++|+.++
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe------------------L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~L  135 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALE------------------LNPNPDEAQAAYYNKACCHAYREEGKKAADCL  135 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            677899999999999999999999999999                  8888875   4999999999999999999999


Q ss_pred             HHHhhcC
Q 019054          288 EFAMRDG  294 (347)
Q Consensus       288 ~~al~~~  294 (347)
                      ++|+++.
T Consensus       136 rrALels  142 (453)
T PLN03098        136 RTALRDY  142 (453)
T ss_pred             HHHHHhc
Confidence            9999984

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.53  E-value=8.4e-07  Score=75.86  Aligned_cols=109  Identities=18%  Similarity=0.115  Sum_probs=59.7

Q ss_pred             HHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC
Q 019054          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (347)
Q Consensus       215 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~  294 (347)
                      .+-.|..+-..|+|++|+++|+..|.                  .+|.+..++-..-.+...+|+--+||+.....++..
T Consensus        89 ~~lkam~lEa~~~~~~A~e~y~~lL~------------------ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F  150 (289)
T KOG3060|consen   89 GKLKAMLLEATGNYKEAIEYYESLLE------------------DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF  150 (289)
T ss_pred             HHHHHHHHHHhhchhhHHHHHHHHhc------------------cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh
Confidence            34566677788999999999998887                  334444444333333334444444444444444444


Q ss_pred             CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 019054          295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (347)
Q Consensus       295 p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~  341 (347)
                      +.+.+||..++.+|...|+|++|.-+|++.+-+.|.++.....++.+
T Consensus       151 ~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~  197 (289)
T KOG3060|consen  151 MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEV  197 (289)
T ss_pred             cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence            44444444444444444444444444444444444444444444433

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.49  E-value=1.1e-06  Score=84.26  Aligned_cols=125  Identities=18%  Similarity=0.158  Sum_probs=101.2

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  291 (347)
                      +..++..|..|...++|.+|+..|++|+.+.......          ..|..+..+.|||..|.+.|+|++|..+|++|+
T Consensus       241 a~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~----------~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al  310 (508)
T KOG1840|consen  241 ASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE----------DHPAVAATLNNLAVLYYKQGKFAEAEEYCERAL  310 (508)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC----------CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence            4455679999999999999999999999976543222          678888999999999999999999999999999


Q ss_pred             hcCC--------CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-----CC---HHHHHHHHHHHHHhc
Q 019054          292 RDGD--------DNVKALFRQGQAYMALNDVDAAVESFEKALKLEP-----ND---GGIKKELAVAKKKVS  346 (347)
Q Consensus       292 ~~~p--------~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P-----~~---~~~~~~l~~~~~~~~  346 (347)
                      ++..        .=...+...+.++..++++++|+..+++++++--     ++   +.+..+|+.+....+
T Consensus       311 ~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~g  381 (508)
T KOG1840|consen  311 EIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMG  381 (508)
T ss_pred             HHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhc
Confidence            7642        2256788899999999999999999999998742     23   346666766665544

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.48  E-value=1.1e-06  Score=89.66  Aligned_cols=115  Identities=10%  Similarity=0.077  Sum_probs=98.2

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  291 (347)
                      ...+...|..+...|+|++|++.|+++++                  .+|.+..++..++..+..++++++|+..+++++
T Consensus       102 ~~~llalA~ly~~~gdyd~Aiely~kaL~------------------~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~  163 (822)
T PRK14574        102 SRGLASAARAYRNEKRWDQALALWQSSLK------------------KDPTNPDLISGMIMTQADAGRGGVVLKQATELA  163 (822)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------hCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhc
Confidence            44556667788889999999999999999                  888889999999999999999999999999999


Q ss_pred             hcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV  345 (347)
Q Consensus       292 ~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  345 (347)
                      ..+|.+... ..++.++..++++.+|++.|+++++++|++.++...+..+...+
T Consensus       164 ~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~  216 (822)
T PRK14574        164 ERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRN  216 (822)
T ss_pred             ccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            999985554 55566666678887799999999999999999888777665543

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.47  E-value=2.1e-06  Score=75.91  Aligned_cols=88  Identities=20%  Similarity=0.216  Sum_probs=78.4

Q ss_pred             HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-CHHHHHH
Q 019054          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN-DGGIKKE  337 (347)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~-~~~~~~~  337 (347)
                      ..-..+..|+.+|..++...+.+.|+....+|+..+|.++.|-.-+|.++...|+|+.|++.++.+++.||. -+++...
T Consensus       175 ~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~  254 (389)
T COG2956         175 YRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEM  254 (389)
T ss_pred             chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHH
Confidence            444567789999999999999999999999999999999999999999999999999999999999999997 4567777


Q ss_pred             HHHHHHHhc
Q 019054          338 LAVAKKKVS  346 (347)
Q Consensus       338 l~~~~~~~~  346 (347)
                      |..+...++
T Consensus       255 L~~~Y~~lg  263 (389)
T COG2956         255 LYECYAQLG  263 (389)
T ss_pred             HHHHHHHhC
Confidence            777776654

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.47  E-value=1.3e-06  Score=86.17  Aligned_cols=101  Identities=19%  Similarity=0.275  Sum_probs=96.5

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      ...+++.+|.++-.+|+.++|...+..|..                  ++|.+...|..++....++|++.+|+-+|.+|
T Consensus       172 ~~~ay~tL~~IyEqrGd~eK~l~~~llAAH------------------L~p~d~e~W~~ladls~~~~~i~qA~~cy~rA  233 (895)
T KOG2076|consen  172 NPIAYYTLGEIYEQRGDIEKALNFWLLAAH------------------LNPKDYELWKRLADLSEQLGNINQARYCYSRA  233 (895)
T ss_pred             chhhHHHHHHHHHHcccHHHHHHHHHHHHh------------------cCCCChHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            456788999999999999999999999988                  88888899999999999999999999999999


Q ss_pred             hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 019054          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP  329 (347)
Q Consensus       291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P  329 (347)
                      |..+|.+++..++++..|..+|++..|...|.++++++|
T Consensus       234 I~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  234 IQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             HhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence            999999999999999999999999999999999999999

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.40  E-value=1.5e-06  Score=83.29  Aligned_cols=120  Identities=15%  Similarity=0.084  Sum_probs=95.4

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .......+|..++.+|+|+.|+..++.|++.+...+..          ..+.......++|..|+.+++|.+|+..|++|
T Consensus       198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~----------~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~A  267 (508)
T KOG1840|consen  198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGL----------KHLVVASMLNILALVYRSLGKYDEAVNLYEEA  267 (508)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCc----------cCHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            34556679999999999999999999999964332221          35566667778999999999999999999999


Q ss_pred             hhc--------CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-----CCCHHHHHHHHH
Q 019054          291 MRD--------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE-----PNDGGIKKELAV  340 (347)
Q Consensus       291 l~~--------~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~-----P~~~~~~~~l~~  340 (347)
                      +.+        +|.-+-++.++|.+|...|+|++|..++++|+++-     ...+++...+..
T Consensus       268 L~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~  330 (508)
T KOG1840|consen  268 LTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSE  330 (508)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHH
Confidence            965        34447789999999999999999999999999884     234444444443

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=1.2e-06  Score=79.90  Aligned_cols=98  Identities=15%  Similarity=0.111  Sum_probs=88.4

Q ss_pred             HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (347)
Q Consensus       214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  293 (347)
                      .+.+++..+.+.++|.+|+.+..++|.                  +++.+..+++.+|.+++.+++|+.|+.++++|+++
T Consensus       259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe------------------~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~  320 (397)
T KOG0543|consen  259 CHLNLAACYLKLKEYKEAIESCNKVLE------------------LDPNNVKALYRRGQALLALGEYDLARDDFQKALKL  320 (397)
T ss_pred             HhhHHHHHHHhhhhHHHHHHHHHHHHh------------------cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence            357889999999999999999999999                  99999999999999999999999999999999999


Q ss_pred             CCCChhHHHHHHHHHHhcCCHHHH-HHHHHHHHhhCC
Q 019054          294 GDDNVKALFRQGQAYMALNDVDAA-VESFEKALKLEP  329 (347)
Q Consensus       294 ~p~~~~a~~~~g~~~~~~~~~~~A-~~~~~~al~l~P  329 (347)
                      +|+|-.+...+..+.....++.+. .+.|.+.+..-+
T Consensus       321 ~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  321 EPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            999988888888888887777665 677888887655

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.37  E-value=1.8e-06  Score=80.31  Aligned_cols=100  Identities=14%  Similarity=0.096  Sum_probs=88.8

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  291 (347)
                      ...+...|..+...|++++|+..++++++                  ..|....++..+|.++...|++++|+..+++++
T Consensus       114 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~------------------~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l  175 (355)
T cd05804         114 WYLLGMLAFGLEEAGQYDRAEEAARRALE------------------LNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWR  175 (355)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhh
Confidence            44556778888999999999999999999                  778888899999999999999999999999999


Q ss_pred             hcCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 019054          292 RDGDDNV----KALFRQGQAYMALNDVDAAVESFEKALKLEP  329 (347)
Q Consensus       292 ~~~p~~~----~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P  329 (347)
                      ...|.+.    ..+..+|.++..+|++++|+..|++++...|
T Consensus       176 ~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         176 DTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             hccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence            9887432    4567899999999999999999999987776

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK11906 transcriptional regulator; Provisional

Probab=98.36  E-value=4.8e-06  Score=77.77  Aligned_cols=99  Identities=13%  Similarity=0.073  Sum_probs=81.2

Q ss_pred             hhhHHHHHHHHHHHH---HHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHc---------CChHHHHHHHHHHhh
Q 019054          225 KQDYKMALRKYRKAL---RYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL---------GDLKGALLDTEFAMR  292 (347)
Q Consensus       225 ~g~y~~A~~~y~~al---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l---------~~~~~A~~~~~~al~  292 (347)
                      ...-+.|+..+.+|+   .                  ++|..+.+|.-+|.|++.+         ..-.+|++..++|++
T Consensus       271 ~~~~~~Al~lf~ra~~~~~------------------ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve  332 (458)
T PRK11906        271 PESIYRAMTIFDRLQNKSD------------------IQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD  332 (458)
T ss_pred             HHHHHHHHHHHHHHhhccc------------------CCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Confidence            346678888999999   5                  7888888888888888865         124567888888889


Q ss_pred             cCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 019054          293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (347)
Q Consensus       293 ~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~  341 (347)
                      ++|.++.|++.+|.++...++++.|...|++|+.++|+...++...+.+
T Consensus       333 ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~  381 (458)
T PRK11906        333 ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALV  381 (458)
T ss_pred             cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHH
Confidence            9999999999999988888889999999999999999888877766654

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.35  E-value=3.2e-06  Score=82.23  Aligned_cols=73  Identities=16%  Similarity=0.169  Sum_probs=67.1

Q ss_pred             HhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 019054          260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG  333 (347)
Q Consensus       260 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~  333 (347)
                      ++..+.++.-+|..+...|++++|...+++|+.++| ++.+|..+|.++...|++++|++.|++|++++|.++.
T Consensus       416 ~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        416 LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            444557788889999999999999999999999999 6899999999999999999999999999999999775

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.35  E-value=1.1e-06  Score=82.66  Aligned_cols=115  Identities=23%  Similarity=0.152  Sum_probs=108.5

Q ss_pred             hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (347)
Q Consensus       210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~  289 (347)
                      +.+..++..|.-|+..+++.+|.++|.||-.                  +++....+|...|..|.-.+..++|+..|..
T Consensus       310 ~~a~sW~aVg~YYl~i~k~seARry~SKat~------------------lD~~fgpaWl~fghsfa~e~EhdQAmaaY~t  371 (611)
T KOG1173|consen  310 SKALSWFAVGCYYLMIGKYSEARRYFSKATT------------------LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFT  371 (611)
T ss_pred             CCCcchhhHHHHHHHhcCcHHHHHHHHHHhh------------------cCccccHHHHHHhHHhhhcchHHHHHHHHHH
Confidence            3566788999999999999999999999998                  9999999999999999999999999999999


Q ss_pred             HhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054          290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (347)
Q Consensus       290 al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  342 (347)
                      |-++-|......+.+|.=|..+++++.|.+.|..|+.+.|.|+-+..+++.+.
T Consensus       372 Aarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvva  424 (611)
T KOG1173|consen  372 AARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVA  424 (611)
T ss_pred             HHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhhee
Confidence            99999999999999999999999999999999999999999999999888763

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.33  E-value=2.6e-06  Score=86.42  Aligned_cols=111  Identities=18%  Similarity=0.123  Sum_probs=71.3

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      ...++..+...+...+++++|++..+.+++                  ..|....+|+-+|..+.+.+++.+|...  .+
T Consensus        30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~------------------~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~   89 (906)
T PRK14720         30 KFKELDDLIDAYKSENLTDEAKDICEEHLK------------------EHKKSISALYISGILSLSRRPLNDSNLL--NL   89 (906)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH------------------hCCcceehHHHHHHHHHhhcchhhhhhh--hh
Confidence            455667777777788999999999998888                  5555556666666666655555555444  44


Q ss_pred             hhcCCCCh-------------------hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 019054          291 MRDGDDNV-------------------KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (347)
Q Consensus       291 l~~~p~~~-------------------~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~  341 (347)
                      +.+-+.+.                   .|++.+|.||..+|++++|.+.|+++++++|+|+.+.++++-.
T Consensus        90 l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~  159 (906)
T PRK14720         90 IDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATS  159 (906)
T ss_pred             hhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence            44433333                   5666666666666666666666666666666666666655543

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.33  E-value=2.9e-06  Score=81.11  Aligned_cols=115  Identities=16%  Similarity=0.197  Sum_probs=98.3

Q ss_pred             HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (347)
Q Consensus       214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  293 (347)
                      .++..+...|..+||...+...+..|.                  -.|...+.+.-.|.....+|+-++|...+..+++.
T Consensus         9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~------------------k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~   70 (700)
T KOG1156|consen    9 ALFRRALKCYETKQYKKGLKLIKQILK------------------KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN   70 (700)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHH------------------hCCccchhHHhccchhhcccchHHHHHHHHHHhcc
Confidence            445556667788899988888888888                  56667777777888888999999999999999999


Q ss_pred             CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       294 ~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      |+.+.-+|.-+|.++..-++|++|+++|+.|+.++|+|.+++.-|+.++..++
T Consensus        71 d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmR  123 (700)
T KOG1156|consen   71 DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMR  123 (700)
T ss_pred             CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998888876654

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.32  E-value=9.8e-06  Score=62.85  Aligned_cols=81  Identities=21%  Similarity=0.211  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---CHHHHHHH
Q 019054          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPN---DGGIKKEL  338 (347)
Q Consensus       265 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~---~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~---~~~~~~~l  338 (347)
                      .+.+++|.++-.+|+.++|+..|++++....+.   ..++..+|.++..+|++++|+..+++++.-.|+   +..+...+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            468899999999999999999999999976544   679999999999999999999999999999898   66666666


Q ss_pred             HHHHHHh
Q 019054          339 AVAKKKV  345 (347)
Q Consensus       339 ~~~~~~~  345 (347)
                      +.+...+
T Consensus        82 Al~L~~~   88 (120)
T PF12688_consen   82 ALALYNL   88 (120)
T ss_pred             HHHHHHC
Confidence            6554443

>TIGR00540 hemY_coli hemY protein

Probab=98.32  E-value=1e-05  Score=77.05  Aligned_cols=116  Identities=16%  Similarity=0.083  Sum_probs=76.9

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+......|...+..|+|+.|.+...++.+                  ..|.....+.-.|.++.++|+++.|..++.++
T Consensus        83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~------------------~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a  144 (409)
T TIGR00540        83 KAQKQTEEALLKLAEGDYAKAEKLIAKNAD------------------HAAEPVLNLIKAAEAAQQRGDEARANQHLEEA  144 (409)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHhh------------------cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            566667777788888888888888888777                  34444445555666666667777777777776


Q ss_pred             hhcCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054          291 MRDGDDNV-KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (347)
Q Consensus       291 l~~~p~~~-~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  344 (347)
                      .+..|++. .+...++.++...|++++|++.+++.++..|+++.+...+..+...
T Consensus       145 ~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~  199 (409)
T TIGR00540       145 AELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIR  199 (409)
T ss_pred             HHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            66666654 3444456666667777777777777777777766666655555433

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.28  E-value=2.9e-06  Score=79.20  Aligned_cols=101  Identities=15%  Similarity=0.143  Sum_probs=79.8

Q ss_pred             HHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC
Q 019054          216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD  295 (347)
Q Consensus       216 ~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p  295 (347)
                      ..++..+...++-.+|++...+++.                  ..|....++...|..+++.++++.|+..+++|+.+.|
T Consensus       204 ~~LA~v~l~~~~E~~AI~ll~~aL~------------------~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP  265 (395)
T PF09295_consen  204 VLLARVYLLMNEEVEAIRLLNEALK------------------ENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSP  265 (395)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence            3355555566677788888888887                  6667788888889999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q 019054          296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI  334 (347)
Q Consensus       296 ~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~  334 (347)
                      ++.++|+.++.+|..+|+|++|+..+..+-.+.+.+...
T Consensus       266 ~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~~~k~~  304 (395)
T PF09295_consen  266 SEFETWYQLAECYIQLGDFENALLALNSCPMLTYKDKYK  304 (395)
T ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCCccchh
Confidence            999999999999999999999997776554443344333

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.27  E-value=1.5e-06  Score=51.32  Aligned_cols=32  Identities=38%  Similarity=0.797  Sum_probs=21.0

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 019054          299 KALFRQGQAYMALNDVDAAVESFEKALKLEPN  330 (347)
Q Consensus       299 ~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  330 (347)
                      ++|+++|.+|..++++++|+.+|++|++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            56666666666666666666666666666665

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.26  E-value=1.8e-05  Score=75.01  Aligned_cols=116  Identities=14%  Similarity=0.075  Sum_probs=68.6

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+......|...+-.|+|+.|.+...++-+                  ..+.-...+...+.+..++|+++.|..++.++
T Consensus        83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~------------------~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A  144 (398)
T PRK10747         83 RARKQTEQALLKLAEGDYQQVEKLMTRNAD------------------HAEQPVVNYLLAAEAAQQRGDEARANQHLERA  144 (398)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHh------------------cccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            455566667777777777777766655544                  11111122333344446667777777777777


Q ss_pred             hhcCCCChhH-HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054          291 MRDGDDNVKA-LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (347)
Q Consensus       291 l~~~p~~~~a-~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  344 (347)
                      .+.+|++..+ ....+..+...|++++|++.+++..+.+|+++.+...+..+...
T Consensus       145 ~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~  199 (398)
T PRK10747        145 AELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIR  199 (398)
T ss_pred             HhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            6666665432 23446666666777777777777777777766666665555433

>PRK11906 transcriptional regulator; Provisional

Probab=98.25  E-value=9.1e-06  Score=75.92  Aligned_cols=91  Identities=15%  Similarity=0.103  Sum_probs=84.9

Q ss_pred             chhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHH
Q 019054          224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFR  303 (347)
Q Consensus       224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~  303 (347)
                      ...+-.+|.+.-++|++                  +++.++.++..+|.+....++++.|+..+++|+.++|+++.++|.
T Consensus       316 ~~~~~~~a~~~A~rAve------------------ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~  377 (458)
T PRK11906        316 LELAAQKALELLDYVSD------------------ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYY  377 (458)
T ss_pred             chHHHHHHHHHHHHHHh------------------cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHH
Confidence            45677788888888888                  999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 019054          304 QGQAYMALNDVDAAVESFEKALKLEPNDG  332 (347)
Q Consensus       304 ~g~~~~~~~~~~~A~~~~~~al~l~P~~~  332 (347)
                      +|.+....|+.++|.+.+++|++++|.-.
T Consensus       378 ~~~~~~~~G~~~~a~~~i~~alrLsP~~~  406 (458)
T PRK11906        378 RALVHFHNEKIEEARICIDKSLQLEPRRR  406 (458)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHhccCchhh
Confidence            99999999999999999999999999643

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.25  E-value=3.1e-05  Score=69.87  Aligned_cols=109  Identities=17%  Similarity=0.218  Sum_probs=86.2

Q ss_pred             hhHHHHHHcCccccch-hhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 019054          210 NAVDSIKVFGNEHYKK-QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (347)
Q Consensus       210 ~~a~~~~~~g~~~~~~-g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~  288 (347)
                      ..+..+..+|..+.+. +++++|+++|++|+.+...-            ........++.++|.++.++++|++|+..|+
T Consensus       112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e------------~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e  179 (282)
T PF14938_consen  112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE------------GSPHSAAECLLKAADLYARLGRYEEAIEIYE  179 (282)
T ss_dssp             HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT------------T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC------------CChhhHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            3477889999999998 99999999999999976421            1334456788999999999999999999999


Q ss_pred             HHhhcCCC------Chh-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 019054          289 FAMRDGDD------NVK-ALFRQGQAYMALNDVDAAVESFEKALKLEPN  330 (347)
Q Consensus       289 ~al~~~p~------~~~-a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  330 (347)
                      ++....-+      +++ .++..+.+++..|++-.|...+++....+|.
T Consensus       180 ~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~  228 (282)
T PF14938_consen  180 EVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS  228 (282)
T ss_dssp             HHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred             HHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            99875422      233 4567889999999999999999999999985

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.22  E-value=1.3e-05  Score=78.21  Aligned_cols=113  Identities=15%  Similarity=0.075  Sum_probs=101.0

Q ss_pred             HHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC
Q 019054          216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD  295 (347)
Q Consensus       216 ~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p  295 (347)
                      ...+..+.+.+.-++|..+..+|-.                  ..+..+..|+.+|.++...|++.+|.+.|..|+.++|
T Consensus       654 llaa~~~~~~~~~~~a~~CL~Ea~~------------------~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP  715 (799)
T KOG4162|consen  654 LLAADLFLLSGNDDEARSCLLEASK------------------IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDP  715 (799)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHh------------------cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCC
Confidence            3444455566667777778888877                  8889999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHhcCCHHHHHH--HHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          296 DNVKALFRQGQAYMALNDVDAAVE--SFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       296 ~~~~a~~~~g~~~~~~~~~~~A~~--~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      +++.+...+|.++...|+..-|..  .+..+++++|.+.++|..++.+.++++
T Consensus       716 ~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~G  768 (799)
T KOG4162|consen  716 DHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLG  768 (799)
T ss_pred             CCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Confidence            999999999999999999888888  999999999999999999999988765

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.21  E-value=3.1e-05  Score=62.53  Aligned_cols=119  Identities=12%  Similarity=0.020  Sum_probs=87.1

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+...+......+..+++..+...+++.+.-.+               ..+....+.+.+|.+++..|++++|+..++.+
T Consensus        10 ~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~   74 (145)
T PF09976_consen   10 QASALYEQALQALQAGDPAKAEAAAEQLAKDYP---------------SSPYAALAALQLAKAAYEQGDYDEAKAALEKA   74 (145)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC---------------CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            444555555555677888888777777776111               22234677888999999999999999999999


Q ss_pred             hhcCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054          291 MRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV  345 (347)
Q Consensus       291 l~~~p~~---~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  345 (347)
                      +...|+.   ..+.+++|.++...|+|++|+..++. ..-.+-.+.+...++.+....
T Consensus        75 ~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~  131 (145)
T PF09976_consen   75 LANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQ  131 (145)
T ss_pred             HhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHC
Confidence            9987665   56899999999999999999999966 233334555555555554443

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.21  E-value=1.6e-05  Score=72.59  Aligned_cols=101  Identities=19%  Similarity=0.103  Sum_probs=89.4

Q ss_pred             hhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHH
Q 019054          226 QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQG  305 (347)
Q Consensus       226 g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g  305 (347)
                      .--++|...|+++|+                  +.|....+...+|..+..-|.+..++..++++|...|+ .-.+..+|
T Consensus       418 ~~rEKAKkf~ek~L~------------------~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lg  478 (564)
T KOG1174|consen  418 RMREKAKKFAEKSLK------------------INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLG  478 (564)
T ss_pred             hhHHHHHHHHHhhhc------------------cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHH
Confidence            334566666677766                  89999999999999999999999999999999998875 45678899


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054          306 QAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV  345 (347)
Q Consensus       306 ~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  345 (347)
                      ..+...+.+.+|...|..|+.++|++...+..|..+++..
T Consensus       479 d~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~  518 (564)
T KOG1174|consen  479 DIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSD  518 (564)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999998764

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.19  E-value=2.1e-05  Score=69.67  Aligned_cols=116  Identities=14%  Similarity=0.062  Sum_probs=101.5

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      ...++..+|..|+..|-|+.|...|....+                  .......++..+..+|.+-.+|++||+..++.
T Consensus       106 r~lAl~qL~~Dym~aGl~DRAE~~f~~L~d------------------e~efa~~AlqqLl~IYQ~treW~KAId~A~~L  167 (389)
T COG2956         106 RLLALQQLGRDYMAAGLLDRAEDIFNQLVD------------------EGEFAEGALQQLLNIYQATREWEKAIDVAERL  167 (389)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHhc------------------chhhhHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            567788899999999999999999988876                  55666778888999999999999999999999


Q ss_pred             hhcCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054          291 MRDGDDN-----VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (347)
Q Consensus       291 l~~~p~~-----~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  344 (347)
                      .++.+..     +..|+-++..+....+.+.|...+++|++-+|.+..+.-.++.+.-.
T Consensus       168 ~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~  226 (389)
T COG2956         168 VKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELA  226 (389)
T ss_pred             HHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHh
Confidence            9998765     67899999999999999999999999999999988777777666543

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.19  E-value=5e-05  Score=65.23  Aligned_cols=99  Identities=16%  Similarity=0.126  Sum_probs=85.2

Q ss_pred             hhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHH
Q 019054          226 QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQG  305 (347)
Q Consensus       226 g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g  305 (347)
                      |+--+||+....-++                  .=+.+..+|..+|..|...++|.+|.-++++.+-+.|.++..+.++|
T Consensus       134 GK~l~aIk~ln~YL~------------------~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rla  195 (289)
T KOG3060|consen  134 GKNLEAIKELNEYLD------------------KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLA  195 (289)
T ss_pred             CCcHHHHHHHHHHHH------------------HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence            344488888888887                  55677899999999999999999999999999999999999999999


Q ss_pred             HHHHhcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054          306 QAYMALN---DVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (347)
Q Consensus       306 ~~~~~~~---~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  342 (347)
                      .+++-+|   +++-|.++|.++++++|.+...+..+-.+-
T Consensus       196 e~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~  235 (289)
T KOG3060|consen  196 EVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCG  235 (289)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHH
Confidence            9999887   577799999999999997777666655443

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.19  E-value=4.6e-06  Score=52.50  Aligned_cols=41  Identities=32%  Similarity=0.430  Sum_probs=24.0

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 019054          299 KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELA  339 (347)
Q Consensus       299 ~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~  339 (347)
                      .+++.+|.+|..+|++++|++.|+++++.+|+|+.++..|+
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            34555566666666666666666666666666665555554

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.19  E-value=2.6e-05  Score=63.94  Aligned_cols=102  Identities=16%  Similarity=0.182  Sum_probs=90.9

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  291 (347)
                      ......+|+.+.+.|+|.+|..+|++++.                 ..-.....++..+|.+.+..+++..|...+++..
T Consensus        89 vqnr~rLa~al~elGr~~EA~~hy~qals-----------------G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~  151 (251)
T COG4700          89 VQNRYRLANALAELGRYHEAVPHYQQALS-----------------GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLM  151 (251)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHhc-----------------cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence            44567889999999999999999999997                 2444566788999999999999999999999999


Q ss_pred             hcCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 019054          292 RDGDD--NVKALFRQGQAYMALNDVDAAVESFEKALKLEPN  330 (347)
Q Consensus       292 ~~~p~--~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  330 (347)
                      +.+|.  ++..+...|.+|..+|++++|...|+.++...|.
T Consensus       152 e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg  192 (251)
T COG4700         152 EYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG  192 (251)
T ss_pred             hcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC
Confidence            99985  4788899999999999999999999999999985

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.18  E-value=2.5e-06  Score=61.99  Aligned_cols=69  Identities=26%  Similarity=0.337  Sum_probs=60.0

Q ss_pred             cCChHHHHHHHHHHhhcCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          277 LGDLKGALLDTEFAMRDGDD--NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       277 l~~~~~A~~~~~~al~~~p~--~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      .++|+.|+..++++++.+|.  +...++.+|.+|+.+|+|++|+..+++ .+.+|.+......++.+.-.++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~   72 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLG   72 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhC
Confidence            58999999999999999995  567788899999999999999999999 8899988888888887766554

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.18  E-value=1.9e-06  Score=50.94  Aligned_cols=33  Identities=18%  Similarity=0.236  Sum_probs=31.2

Q ss_pred             HHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHH
Q 019054          287 TEFAMRDGDDNVKALFRQGQAYMALNDVDAAVE  319 (347)
Q Consensus       287 ~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~  319 (347)
                      |++||+++|+++.+|+++|.+|...|++++|++
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            789999999999999999999999999999963

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.17  E-value=1.3e-05  Score=74.51  Aligned_cols=132  Identities=11%  Similarity=-0.040  Sum_probs=98.9

Q ss_pred             HHHHHcCccccchhhHHHHHHHHHHHHHHhhhcc-------------ccCCCChhh------hhhHHhhHHHHHHHHHHH
Q 019054          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW-------------EKEGIDEGK------SSSLRKTKSQIFTNSSAC  273 (347)
Q Consensus       213 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~-------------~~~~~~~~~------~~~~~~~~~~~~~nla~~  273 (347)
                      ......|..++..|++++|+..++++++..+.-.             ........-      .....+....++..+|.+
T Consensus        44 e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~  123 (355)
T cd05804          44 ERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFG  123 (355)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHH
Confidence            3455677788899999999999999987644211             000000000      112345555677789999


Q ss_pred             HHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH----HHHHHHHHHH
Q 019054          274 KLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI----KKELAVAKKK  344 (347)
Q Consensus       274 ~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~----~~~l~~~~~~  344 (347)
                      +..+|++++|+..++++++++|++..++..+|.++...|++++|+..+++++...|.++..    ...++.+...
T Consensus       124 ~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~  198 (355)
T cd05804         124 LEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE  198 (355)
T ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999998864433    2245555443

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>TIGR00540 hemY_coli hemY protein

Probab=98.16  E-value=1.4e-05  Score=76.11  Aligned_cols=114  Identities=18%  Similarity=0.041  Sum_probs=68.0

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHH--HHHHHHHHHHcCChHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQI--FTNSSACKLKLGDLKGALLDTE  288 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~nla~~~~~l~~~~~A~~~~~  288 (347)
                      ........|..+...|++++|+..++++++..                  |.....  ..-+....+..++.+.++..++
T Consensus       262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~------------------pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e  323 (409)
T TIGR00540       262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKL------------------GDDRAISLPLCLPIPRLKPEDNEKLEKLIE  323 (409)
T ss_pred             CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC------------------CCcccchhHHHHHhhhcCCCChHHHHHHHH
Confidence            45667778889999999999999999999932                  222211  0112222233455566666666


Q ss_pred             HHhhcCCCCh--hHHHHHHHHHHhcCCHHHHHHHHH--HHHhhCCCCHHHHHHHHHHHH
Q 019054          289 FAMRDGDDNV--KALFRQGQAYMALNDVDAAVESFE--KALKLEPNDGGIKKELAVAKK  343 (347)
Q Consensus       289 ~al~~~p~~~--~a~~~~g~~~~~~~~~~~A~~~~~--~al~l~P~~~~~~~~l~~~~~  343 (347)
                      ++++.+|+++  ..+..+|.++...|+|++|.+.|+  ++++..|++.... .++.+..
T Consensus       324 ~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~  381 (409)
T TIGR00540       324 KQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA-MAADAFD  381 (409)
T ss_pred             HHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHH
Confidence            6666666666  555556666666666666666666  3555555444422 4444433

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.16  E-value=5.1e-06  Score=48.94  Aligned_cols=34  Identities=47%  Similarity=0.793  Sum_probs=24.1

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 019054          298 VKALFRQGQAYMALNDVDAAVESFEKALKLEPND  331 (347)
Q Consensus       298 ~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  331 (347)
                      +++++.+|.++..+|+|++|+++|+++++++|+|
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            3567777777777777777777777777777764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.15  E-value=2.3e-06  Score=75.78  Aligned_cols=81  Identities=11%  Similarity=0.112  Sum_probs=42.1

Q ss_pred             HhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 019054          260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELA  339 (347)
Q Consensus       260 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~  339 (347)
                      -|.....++..|.++..++++++|+++|+.+++++|.+.++.--.|.-|+--++.+-|+.+|++.+++--.+++...+++
T Consensus       286 fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~Nig  365 (478)
T KOG1129|consen  286 FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIG  365 (478)
T ss_pred             CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHH
Confidence            34444455555555555555555555555555555555555555555555555555555555555555545555444444


Q ss_pred             H
Q 019054          340 V  340 (347)
Q Consensus       340 ~  340 (347)
                      .
T Consensus       366 L  366 (478)
T KOG1129|consen  366 L  366 (478)
T ss_pred             H
Confidence            3

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.14  E-value=3.9e-06  Score=49.53  Aligned_cols=34  Identities=26%  Similarity=0.310  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC
Q 019054          264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN  297 (347)
Q Consensus       264 ~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~  297 (347)
                      +.+|+++|.+|..++++++|+.+|++||+++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            3579999999999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.13  E-value=3e-05  Score=68.82  Aligned_cols=81  Identities=15%  Similarity=0.101  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHH-HHcCChHHHHHHHHHHhhcCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHH
Q 019054          264 SQIFTNSSACK-LKLGDLKGALLDTEFAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPND---GGIKK  336 (347)
Q Consensus       264 ~~~~~nla~~~-~~l~~~~~A~~~~~~al~~~p~~---~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~---~~~~~  336 (347)
                      ....++.|..+ ++.++|++|+..|+..++..|++   +.++|++|.+|+..|+|++|+..|+++++..|++   ++++.
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            45677787776 66799999999999999999998   5899999999999999999999999999999975   45555


Q ss_pred             HHHHHHHH
Q 019054          337 ELAVAKKK  344 (347)
Q Consensus       337 ~l~~~~~~  344 (347)
                      .++.+...
T Consensus       222 klg~~~~~  229 (263)
T PRK10803        222 KVGVIMQD  229 (263)
T ss_pred             HHHHHHHH
Confidence            55555543

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.12  E-value=2.8e-05  Score=75.72  Aligned_cols=115  Identities=9%  Similarity=-0.064  Sum_probs=90.5

Q ss_pred             HHHHHHcCccccc---hhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcC--------Ch
Q 019054          212 VDSIKVFGNEHYK---KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG--------DL  280 (347)
Q Consensus       212 a~~~~~~g~~~~~---~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~--------~~  280 (347)
                      |..++-.|..++.   .+++..|+.+|++|++                  ++|.++.++..++.+|....        +.
T Consensus       339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~------------------ldP~~a~a~A~la~~~~~~~~~~~~~~~~l  400 (517)
T PRK10153        339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILK------------------SEPDFTYAQAEKALADIVRHSQQPLDEKQL  400 (517)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH------------------hCCCcHHHHHHHHHHHHHHHhcCCccHHHH
Confidence            3445556655543   4568899999999999                  99999999999999887653        23


Q ss_pred             HHHHHHHHHHhhc--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054          281 KGALLDTEFAMRD--GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV  345 (347)
Q Consensus       281 ~~A~~~~~~al~~--~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  345 (347)
                      ..+.....+++.+  +|..+.+|.-+|..+...|++++|...+++|+.++| +...+..++.+....
T Consensus       401 ~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~  466 (517)
T PRK10153        401 AALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELK  466 (517)
T ss_pred             HHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHc
Confidence            4556666676664  777889999999999999999999999999999999 567777777665543

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.12  E-value=5.7e-06  Score=52.06  Aligned_cols=42  Identities=17%  Similarity=0.021  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHH
Q 019054          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQ  306 (347)
Q Consensus       265 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~  306 (347)
                      .++..+|.+|..+|++++|+..++++++.+|+++.++..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            468899999999999999999999999999999999999885

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=98.12  E-value=0.00013  Score=55.14  Aligned_cols=106  Identities=17%  Similarity=0.159  Sum_probs=80.2

Q ss_pred             HHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh----
Q 019054          216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM----  291 (347)
Q Consensus       216 ~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al----  291 (347)
                      ...|...+..|-|++|...|.+|+....++..      ++.-..+-.++-++..|+.++..+|+|++++...+++|    
T Consensus        13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~------eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN   86 (144)
T PF12968_consen   13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPA------EEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN   86 (144)
T ss_dssp             HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-T------TS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHhccCCh------HhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh
Confidence            44555666788999999999999997655422      33333556677889999999999999999999999998    


Q ss_pred             ---hcCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019054          292 ---RDGDDN----VKALFRQGQAYMALNDVDAAVESFEKALKL  327 (347)
Q Consensus       292 ---~~~p~~----~~a~~~~g~~~~~~~~~~~A~~~~~~al~l  327 (347)
                         +++.+.    ..+.+.+|.++..+|+.++|+..|+.+-+.
T Consensus        87 RRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   87 RRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             hccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence               455554    457788999999999999999999988764

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.11  E-value=6.3e-05  Score=60.69  Aligned_cols=113  Identities=16%  Similarity=0.052  Sum_probs=84.5

Q ss_pred             HHHcCccccchhhHHHHHHHHHHHHHHhhhcccc--CC-CC-hhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEK--EG-ID-EGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       215 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~--~~-~~-~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      +...|......++...++..+.+++.+..--...  .. .+ ......+......++..++..+...|++++|+..++++
T Consensus         9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~   88 (146)
T PF03704_consen    9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA   88 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            3344555556678899999999999876421111  11 11 12234567778888999999999999999999999999


Q ss_pred             hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019054          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL  327 (347)
Q Consensus       291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l  327 (347)
                      +.++|.+..+|..+-.+|...|++.+|++.|+++.+.
T Consensus        89 l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   89 LALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR  125 (146)
T ss_dssp             HHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999988554

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.10  E-value=4.4e-05  Score=67.39  Aligned_cols=99  Identities=20%  Similarity=0.178  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHH
Q 019054          228 YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQA  307 (347)
Q Consensus       228 y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~  307 (347)
                      .+..+...+..|+                  .+|.+..-|.-||.+|+.++++..|...|.+|+++.|+|+..+.-+|.+
T Consensus       138 ~~~l~a~Le~~L~------------------~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aea  199 (287)
T COG4235         138 MEALIARLETHLQ------------------QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEA  199 (287)
T ss_pred             HHHHHHHHHHHHH------------------hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            4455566666666                  8999999999999999999999999999999999999999999999999


Q ss_pred             HHhcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054          308 YMALN---DVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (347)
Q Consensus       308 ~~~~~---~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  344 (347)
                      ++...   .-.+|...++++++++|.|..++..|+...-.
T Consensus       200 L~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe  239 (287)
T COG4235         200 LYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFE  239 (287)
T ss_pred             HHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence            88765   45689999999999999999999988876543

>PRK15331 chaperone protein SicA; Provisional

Probab=98.09  E-value=6.6e-05  Score=60.78  Aligned_cols=88  Identities=11%  Similarity=-0.076  Sum_probs=79.0

Q ss_pred             HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 019054          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (347)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l  338 (347)
                      +.+......+..|.-++..|++++|...|+-....+|.+.+-++.+|.++..+++|++|+..|..|..++++|+......
T Consensus        32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a  111 (165)
T PRK15331         32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT  111 (165)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence            55566677888899999999999999999999999999999999999999999999999999999999999999888777


Q ss_pred             HHHHHHhc
Q 019054          339 AVAKKKVS  346 (347)
Q Consensus       339 ~~~~~~~~  346 (347)
                      +.|.-.++
T Consensus       112 gqC~l~l~  119 (165)
T PRK15331        112 GQCQLLMR  119 (165)
T ss_pred             HHHHHHhC
Confidence            77765543

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.06  E-value=1.2e-05  Score=78.03  Aligned_cols=84  Identities=20%  Similarity=0.225  Sum_probs=74.2

Q ss_pred             hHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 019054          262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (347)
Q Consensus       262 ~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~  341 (347)
                      .++.+...+|......++|+++..+++..++++|-....||.+|.+..+++++..|..+|.++..++|++.+.++++..+
T Consensus       483 ~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~a  562 (777)
T KOG1128|consen  483 ISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTA  562 (777)
T ss_pred             hhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHH
Confidence            34445555666666689999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             HHHh
Q 019054          342 KKKV  345 (347)
Q Consensus       342 ~~~~  345 (347)
                      .-++
T Consensus       563 yi~~  566 (777)
T KOG1128|consen  563 YIRL  566 (777)
T ss_pred             HHHH
Confidence            6543

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.05  E-value=2.4e-05  Score=70.63  Aligned_cols=106  Identities=20%  Similarity=0.203  Sum_probs=79.6

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHc-CChHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL-GDLKGALLDTEF  289 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l-~~~~~A~~~~~~  289 (347)
                      .+..+.+.++. +++.++++|+.+|++|+++....            .....-+.++.++|.+|... +++++|+.+|++
T Consensus        74 Aa~~~~~Aa~~-~k~~~~~~Ai~~~~~A~~~y~~~------------G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~  140 (282)
T PF14938_consen   74 AAKAYEEAANC-YKKGDPDEAIECYEKAIEIYREA------------GRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQK  140 (282)
T ss_dssp             HHHHHHHHHHH-HHHTTHHHHHHHHHHHHHHHHHC------------T-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHH
T ss_pred             HHHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHhc------------CcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            34455554544 45558999999999999866433            23345578899999999998 999999999999


Q ss_pred             HhhcCCC--C----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 019054          290 AMRDGDD--N----VKALFRQGQAYMALNDVDAAVESFEKALKLEP  329 (347)
Q Consensus       290 al~~~p~--~----~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P  329 (347)
                      |+.+...  .    ..++...|.++..+++|++|+..|++.....-
T Consensus       141 A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l  186 (282)
T PF14938_consen  141 AAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCL  186 (282)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence            9977422  1    57888999999999999999999999988643

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.04  E-value=4.9e-05  Score=70.15  Aligned_cols=113  Identities=13%  Similarity=0.026  Sum_probs=99.5

Q ss_pred             hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (347)
Q Consensus       210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~  289 (347)
                      ...++++++|..+-..|+.++|+.+|-+.-.                  .-..++..+..+|.+|-.+.+...|++++.+
T Consensus       522 sc~ealfniglt~e~~~~ldeald~f~klh~------------------il~nn~evl~qianiye~led~aqaie~~~q  583 (840)
T KOG2003|consen  522 SCTEALFNIGLTAEALGNLDEALDCFLKLHA------------------ILLNNAEVLVQIANIYELLEDPAQAIELLMQ  583 (840)
T ss_pred             HHHHHHHHhcccHHHhcCHHHHHHHHHHHHH------------------HHHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence            3467899999999999999999999988877                  5556788899999999999999999999999


Q ss_pred             HhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 019054          290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAV  340 (347)
Q Consensus       290 al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~  340 (347)
                      +..+-|+++..+..+|..|-+.|+-.+|.+++-...+..|.+-+...+|+.
T Consensus       584 ~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~a  634 (840)
T KOG2003|consen  584 ANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAA  634 (840)
T ss_pred             hcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHH
Confidence            999999999999999999999999888888888888888888777766654

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.03  E-value=3e-05  Score=78.87  Aligned_cols=116  Identities=16%  Similarity=0.178  Sum_probs=98.9

Q ss_pred             hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (347)
Q Consensus       210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~  289 (347)
                      ..-.+++.+|.+|-+.|++++|...|+++|+                  .+|.++.+++|+|..|... +.++|+.++.+
T Consensus       114 ~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~------------------~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~K  174 (906)
T PRK14720        114 ENKLALRTLAEAYAKLNENKKLKGVWERLVK------------------ADRDNPEIVKKLATSYEEE-DKEKAITYLKK  174 (906)
T ss_pred             hhhHHHHHHHHHHHHcCChHHHHHHHHHHHh------------------cCcccHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence            3446889999999999999999999999999                  8899999999999999999 99999999999


Q ss_pred             Hhh--------------------cCCCChhH--------HHHHH------------HHHHhcCCHHHHHHHHHHHHhhCC
Q 019054          290 AMR--------------------DGDDNVKA--------LFRQG------------QAYMALNDVDAAVESFEKALKLEP  329 (347)
Q Consensus       290 al~--------------------~~p~~~~a--------~~~~g------------~~~~~~~~~~~A~~~~~~al~l~P  329 (347)
                      |+.                    .+|++...        .-.++            ..|...++|++++..++.+++++|
T Consensus       175 AV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~  254 (906)
T PRK14720        175 AIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDN  254 (906)
T ss_pred             HHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCC
Confidence            973                    34544322        22234            778889999999999999999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 019054          330 NDGGIKKELAVAKKK  344 (347)
Q Consensus       330 ~~~~~~~~l~~~~~~  344 (347)
                      .|..++..|..+.+.
T Consensus       255 ~n~~a~~~l~~~y~~  269 (906)
T PRK14720        255 KNNKAREELIRFYKE  269 (906)
T ss_pred             cchhhHHHHHHHHHH
Confidence            999999999988763

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.03  E-value=2.9e-05  Score=70.13  Aligned_cols=103  Identities=18%  Similarity=0.138  Sum_probs=48.9

Q ss_pred             cccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcC--ChHHHHHHHHHHhhcCCCCh
Q 019054          221 EHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG--DLKGALLDTEFAMRDGDDNV  298 (347)
Q Consensus       221 ~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~--~~~~A~~~~~~al~~~p~~~  298 (347)
                      .+.+.+|++.|...+++.-+                  .+++........|.+.+..|  ++++|...|++.....+.++
T Consensus       140 i~L~~~R~dlA~k~l~~~~~------------------~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~  201 (290)
T PF04733_consen  140 ILLKMNRPDLAEKELKNMQQ------------------IDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTP  201 (290)
T ss_dssp             HHHHTT-HHHHHHHHHHHHC------------------CSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SH
T ss_pred             HHHHcCCHHHHHHHHHHHHh------------------cCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCH
Confidence            55667788888777766544                  11111111111222222222  35555555555544444555


Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 019054          299 KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (347)
Q Consensus       299 ~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~  341 (347)
                      ..+..++.+++.+|+|++|...++++++.+|.+++...++..+
T Consensus       202 ~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~  244 (290)
T PF04733_consen  202 KLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVC  244 (290)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence            5555555555555555555555555555555555555544443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.03  E-value=4.2e-05  Score=72.49  Aligned_cols=116  Identities=13%  Similarity=0.050  Sum_probs=59.9

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhc-----c-ccCCCCh-------hhhhhHHhhHHHHHHHHHHHHHHc
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC-----W-EKEGIDE-------GKSSSLRKTKSQIFTNSSACKLKL  277 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~-----~-~~~~~~~-------~~~~~~~~~~~~~~~nla~~~~~l  277 (347)
                      .+......+..+...|+.++|....+++++.-..-     . .....+.       +.+.+..|.++..+..+|..++..
T Consensus       262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~  341 (398)
T PRK10747        262 QVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKH  341 (398)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Confidence            45566777888899999999999999998721100     0 0000000       112233444444444555555555


Q ss_pred             CChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019054          278 GDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL  327 (347)
Q Consensus       278 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l  327 (347)
                      ++|++|..+++++++..|++. .+..++.++..+|+.++|.++|++++.+
T Consensus       342 ~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~~  390 (398)
T PRK10747        342 GEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLML  390 (398)
T ss_pred             CCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            555555555555555544332 2334445555555555555555554443

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.02  E-value=7.6e-05  Score=69.83  Aligned_cols=101  Identities=17%  Similarity=0.144  Sum_probs=90.3

Q ss_pred             hhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHH
Q 019054          225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQ  304 (347)
Q Consensus       225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~  304 (347)
                      .++|+.|+..+++...                  .+|   .+..-+|.+++..++..+|+....++|...|.++..+...
T Consensus       182 t~~~~~ai~lle~L~~------------------~~p---ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Q  240 (395)
T PF09295_consen  182 TQRYDEAIELLEKLRE------------------RDP---EVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQ  240 (395)
T ss_pred             cccHHHHHHHHHHHHh------------------cCC---cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            4578999999988776                  333   3555689999999999999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          305 GQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       305 g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      +..+...++++.|+...++|.++.|++...+..|+++.-.++
T Consensus       241 a~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~  282 (395)
T PF09295_consen  241 AEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLG  282 (395)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999887654

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.02  E-value=0.00011  Score=63.00  Aligned_cols=116  Identities=15%  Similarity=0.151  Sum_probs=89.5

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcC-----------C
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-----------D  279 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-----------~  279 (347)
                      ...+...+|..+++.|+|.+|+..|++.++..+               ..+....+++.+|.+++++.           .
T Consensus        41 a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP---------------~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~  105 (203)
T PF13525_consen   41 APQAQLMLAYAYYKQGDYEEAIAAYERFIKLYP---------------NSPKADYALYMLGLSYYKQIPGILRSDRDQTS  105 (203)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T---------------T-TTHHHHHHHHHHHHHHHHHHHH-TT---HH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---------------CCcchhhHHHHHHHHHHHhCccchhcccChHH
Confidence            356778899999999999999999999999544               34456678889999987753           2


Q ss_pred             hHHHHHHHHHHhhcCCCCh-----------------hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 019054          280 LKGALLDTEFAMRDGDDNV-----------------KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (347)
Q Consensus       280 ~~~A~~~~~~al~~~p~~~-----------------~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~  341 (347)
                      ..+|+..++..+...|++.                 +--+..|.-|...|.|..|+.-++.+++-.|+.+.....|..+
T Consensus       106 ~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l  184 (203)
T PF13525_consen  106 TRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARL  184 (203)
T ss_dssp             HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHH
Confidence            4589999999999999983                 1234468889999999999999999999999977665554443

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.00  E-value=9.4e-06  Score=72.38  Aligned_cols=70  Identities=17%  Similarity=0.080  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 019054          267 FTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKK  336 (347)
Q Consensus       267 ~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~  336 (347)
                      +-..|.-|+++|+|++||.+|.+++.++|.|+-.+.+||.+|+.+++|..|..++..|+.|+-....+..
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYS  169 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYS  169 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHH
Confidence            4567899999999999999999999999999999999999999999999999999999999854333333

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=98.00  E-value=2.8e-05  Score=50.67  Aligned_cols=48  Identities=15%  Similarity=0.260  Sum_probs=39.2

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          299 KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       299 ~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      .++|.+|.+++.+|+|++|.+..+.+++++|+|.++......+++++.
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~   49 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQ   49 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHh
Confidence            467888899999999999999999999999999988888888877764

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.99  E-value=3.4e-05  Score=74.01  Aligned_cols=116  Identities=16%  Similarity=0.092  Sum_probs=99.7

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  291 (347)
                      .+.+--.|-.+...|+-++|..+-..+++                  .++....+|.-+|.++..-++|++|+.+|+.|+
T Consensus        41 geslAmkGL~L~~lg~~~ea~~~vr~glr------------------~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl  102 (700)
T KOG1156|consen   41 GESLAMKGLTLNCLGKKEEAYELVRLGLR------------------NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNAL  102 (700)
T ss_pred             chhHHhccchhhcccchHHHHHHHHHHhc------------------cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            34455678888889999999999999998                  788888899999999999999999999999999


Q ss_pred             hcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV  345 (347)
Q Consensus       292 ~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  345 (347)
                      .++|+|...|.-++....++++|+.....-.+.+++.|.....+..++.....+
T Consensus       103 ~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~  156 (700)
T KOG1156|consen  103 KIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLL  156 (700)
T ss_pred             hcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999988899999998888777766665443

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.98  E-value=5.5e-05  Score=58.40  Aligned_cols=64  Identities=25%  Similarity=0.250  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 019054          267 FTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN  330 (347)
Q Consensus       267 ~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  330 (347)
                      +..-|.+....|+.+.|++.|.++|.+.|.++.+|.++++++.-.|+.++|+.++++|+++...
T Consensus        46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~  109 (175)
T KOG4555|consen   46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGD  109 (175)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCc
Confidence            4445777888999999999999999999999999999999999999999999999999999754

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.98  E-value=4e-05  Score=70.05  Aligned_cols=109  Identities=12%  Similarity=0.053  Sum_probs=79.7

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  291 (347)
                      +..++..|..+|..++|..|+.+-+|+|+                  .++....++.--|.....+++.++|+-.|+.|.
T Consensus       300 a~~wfV~~~~l~~~K~~~rAL~~~eK~I~------------------~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq  361 (564)
T KOG1174|consen  300 ASHWFVHAQLLYDEKKFERALNFVEKCID------------------SEPRNHEALILKGRLLIALERHTQAVIAFRTAQ  361 (564)
T ss_pred             hhhhhhhhhhhhhhhhHHHHHHHHHHHhc------------------cCcccchHHHhccHHHHhccchHHHHHHHHHHH
Confidence            44556667777777788888888788877                  677777777777777777777777777777777


Q ss_pred             hcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 019054          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (347)
Q Consensus       292 ~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l  338 (347)
                      .+.|..-.+|--+-.+|...|++.||...-..+++.-|.+......+
T Consensus       362 ~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~  408 (564)
T KOG1174|consen  362 MLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLF  408 (564)
T ss_pred             hcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhh
Confidence            77777777777777777777777777777777777666666655554

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.96  E-value=6.5e-05  Score=59.44  Aligned_cols=71  Identities=17%  Similarity=0.242  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q 019054          264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI  334 (347)
Q Consensus       264 ~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~---~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~  334 (347)
                      ...+++.|...++.|+|.+|+..++.+....|-.   .++.+.++.+|+..++|++|+..+++-++|+|.++.+
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v   83 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV   83 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence            4568889999999999999999999999988865   6899999999999999999999999999999998763

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.96  E-value=2.6e-05  Score=71.22  Aligned_cols=105  Identities=18%  Similarity=0.324  Sum_probs=84.5

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  291 (347)
                      -.++-++||.||-.|+|+.|+..-+.-|++..+.            ......-.++.|+|.||.-+|+++.|+++|..++
T Consensus       195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef------------GDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl  262 (639)
T KOG1130|consen  195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF------------GDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL  262 (639)
T ss_pred             cchhcccCceeeeeccHHHHHHHHHHHHHHHHHh------------hhHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence            3456789999999999999999998888865543            1222344689999999999999999999999876


Q ss_pred             hc----CCC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 019054          292 RD----GDD--NVKALFRQGQAYMALNDVDAAVESFEKALKLE  328 (347)
Q Consensus       292 ~~----~p~--~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~  328 (347)
                      .+    ...  .++..|-+|..|.-+.+++.|+.++++-+.+.
T Consensus       263 ~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIA  305 (639)
T KOG1130|consen  263 NLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIA  305 (639)
T ss_pred             HHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            43    322  36678899999999999999999998877664

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.94  E-value=2e-05  Score=46.26  Aligned_cols=34  Identities=18%  Similarity=0.180  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC
Q 019054          264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN  297 (347)
Q Consensus       264 ~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~  297 (347)
                      +.+++.+|.+++++|++++|+.+++++++++|++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            3578999999999999999999999999999975

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.92  E-value=3e-05  Score=77.66  Aligned_cols=80  Identities=21%  Similarity=0.217  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054          266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV  345 (347)
Q Consensus       266 ~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  345 (347)
                      .|..+|..|.+.+++..|+.+++.|++.+|.+..+|.-+|.+|...|+|..|++.|.+|..++|.+...+...+.++..+
T Consensus       564 nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~  643 (1238)
T KOG1127|consen  564 NWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDN  643 (1238)
T ss_pred             hhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHh
Confidence            35557888888888888888888888888888888888888888888888888888888888888777666665555443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.87  E-value=0.0001  Score=64.78  Aligned_cols=73  Identities=18%  Similarity=0.158  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCh---hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 019054          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNV---KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIK  335 (347)
Q Consensus       263 ~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~---~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~  335 (347)
                      ....++..|.-+++.|+|++|+..+++++...|...   .+.+.+|.+|+.+++|++|+..|++.++++|+++.+-
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~  106 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID  106 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH
Confidence            455577889999999999999999999999999885   4569999999999999999999999999999877643

>PRK10941 hypothetical protein; Provisional

Probab=97.86  E-value=0.00024  Score=63.13  Aligned_cols=83  Identities=13%  Similarity=0.084  Sum_probs=73.2

Q ss_pred             HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 019054          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (347)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l  338 (347)
                      ........+.|+=.+|++.++++.|+...+..+.++|+++.-+.-||.+|.+++.+..|..+++..++..|+++.+..-.
T Consensus       176 ~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik  255 (269)
T PRK10941        176 NIEVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIR  255 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHH
Confidence            34455667889999999999999999999999999999999999999999999999999999999999999988755444


Q ss_pred             HHH
Q 019054          339 AVA  341 (347)
Q Consensus       339 ~~~  341 (347)
                      ..+
T Consensus       256 ~ql  258 (269)
T PRK10941        256 AQI  258 (269)
T ss_pred             HHH
Confidence            333

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.84  E-value=0.0002  Score=62.07  Aligned_cols=119  Identities=17%  Similarity=0.147  Sum_probs=95.1

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+..+.+.|...++.|+|.+|+.+|++.....+               ..|....+...++.++++.++|+.|+...++-
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p---------------~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drF   97 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHP---------------FSPYSEQAQLDLAYAYYKNGEYDLALAYIDRF   97 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---------------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            467789999999999999999999999887333               44556678899999999999999999999999


Q ss_pred             hhcCCCCh---hHHHHHHHHHHhcCC--------HHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHH
Q 019054          291 MRDGDDNV---KALFRQGQAYMALND--------VDAAVESFEKALKLEPNDGG---IKKELAVAKKK  344 (347)
Q Consensus       291 l~~~p~~~---~a~~~~g~~~~~~~~--------~~~A~~~~~~al~l~P~~~~---~~~~l~~~~~~  344 (347)
                      +++.|.+.   -++|.+|.++...=+        -.+|...|+..++.-|+.+-   +...+..++..
T Consensus        98 i~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~  165 (254)
T COG4105          98 IRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDA  165 (254)
T ss_pred             HHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence            99999874   578888998776422        34688899999999998664   44444444433

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.82  E-value=0.00017  Score=70.01  Aligned_cols=78  Identities=19%  Similarity=0.127  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 019054          264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (347)
Q Consensus       264 ~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~  341 (347)
                      .-+++.+|+.|..+|++++|+.+.++||+..|+.++.|+..|.+|...|++.+|.+.++.|.++++.|.-+.......
T Consensus       194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy  271 (517)
T PF12569_consen  194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKY  271 (517)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHH
Confidence            456788999999999999999999999999999999999999999999999999999999999999988877665543

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.81  E-value=0.00011  Score=70.68  Aligned_cols=81  Identities=22%  Similarity=0.180  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (347)
Q Consensus       265 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  344 (347)
                      .+|+..+.....+++.++|+..|+++|+..|+..|.|..+|+++.++++.+.|.+.|...++..|+...++..|+.++.+
T Consensus       652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk  731 (913)
T KOG0495|consen  652 RVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK  731 (913)
T ss_pred             hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH
Confidence            55777777777788888888888888888888888888888888888888888888888888888888888888887765


Q ss_pred             h
Q 019054          345 V  345 (347)
Q Consensus       345 ~  345 (347)
                      .
T Consensus       732 ~  732 (913)
T KOG0495|consen  732 D  732 (913)
T ss_pred             h
Confidence            4

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.80  E-value=9.3e-05  Score=74.26  Aligned_cols=109  Identities=12%  Similarity=0.009  Sum_probs=98.2

Q ss_pred             HHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC
Q 019054          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (347)
Q Consensus       215 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~  294 (347)
                      +...|-.+.+.+++..|+..++.|++                  .+|.+..+|..+|.+|...|.|..|+..+++|..++
T Consensus       565 W~~rG~yyLea~n~h~aV~~fQsALR------------------~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr  626 (1238)
T KOG1127|consen  565 WVQRGPYYLEAHNLHGAVCEFQSALR------------------TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR  626 (1238)
T ss_pred             hhhccccccCccchhhHHHHHHHHhc------------------CCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC
Confidence            45589999999999999999999999                  999999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 019054          295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (347)
Q Consensus       295 p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~  341 (347)
                      |.+.-+.|..+.....+|+|.+|+..+...+.-..........++++
T Consensus       627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~  673 (1238)
T KOG1127|consen  627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAES  673 (1238)
T ss_pred             cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            99999999999999999999999999998887765555555555444

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.78  E-value=9.7e-05  Score=61.31  Aligned_cols=76  Identities=14%  Similarity=0.070  Sum_probs=68.0

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      +..-+.+.|.++.+.+.++.|+....+||.                  +.|.+..++..+|.+|-++..|++|+.+|.++
T Consensus       133 rsIly~Nraaa~iKl~k~e~aI~dcsKaie------------------l~pty~kAl~RRAeayek~ek~eealeDyKki  194 (271)
T KOG4234|consen  133 RSILYSNRAAALIKLRKWESAIEDCSKAIE------------------LNPTYEKALERRAEAYEKMEKYEEALEDYKKI  194 (271)
T ss_pred             HHHHHhhhHHHHHHhhhHHHHHHHHHhhHh------------------cCchhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            455678889999999999999999999999                  89999999999999999999999999999999


Q ss_pred             hhcCCCChhHHHHH
Q 019054          291 MRDGDDNVKALFRQ  304 (347)
Q Consensus       291 l~~~p~~~~a~~~~  304 (347)
                      ++++|..-.+--..
T Consensus       195 ~E~dPs~~ear~~i  208 (271)
T KOG4234|consen  195 LESDPSRREAREAI  208 (271)
T ss_pred             HHhCcchHHHHHHH
Confidence            99999876554333

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.77  E-value=0.00028  Score=61.64  Aligned_cols=79  Identities=19%  Similarity=0.201  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhhcCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHH
Q 019054          267 FTNSSACKLKLGDLKGALLDTEFAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG---GIKKELAV  340 (347)
Q Consensus       267 ~~nla~~~~~l~~~~~A~~~~~~al~~~p~~---~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~---~~~~~l~~  340 (347)
                      .++.|.-+++.|+|..|...|..-+...|++   +.|+|++|.+++.+|+|++|...|..+.+-.|+++   +....|+.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            7788888999999999999999999999987   68999999999999999999999999999998755   55556666


Q ss_pred             HHHHh
Q 019054          341 AKKKV  345 (347)
Q Consensus       341 ~~~~~  345 (347)
                      +..++
T Consensus       224 ~~~~l  228 (262)
T COG1729         224 SLGRL  228 (262)
T ss_pred             HHHHh
Confidence            55544

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.76  E-value=0.00012  Score=66.05  Aligned_cols=94  Identities=17%  Similarity=0.191  Sum_probs=75.9

Q ss_pred             hHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHH
Q 019054          227 DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQ  306 (347)
Q Consensus       227 ~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~  306 (347)
                      .+.+|.-.|+....                  .-+..+.+++.+|.|++.+|+|++|...+.+|+..+|.++.++.++..
T Consensus       182 ~~~~A~y~f~El~~------------------~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv  243 (290)
T PF04733_consen  182 KYQDAFYIFEELSD------------------KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIV  243 (290)
T ss_dssp             CCCHHHHHHHHHHC------------------CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHh------------------ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence            57788888877544                  223456778899999999999999999999999999999999999999


Q ss_pred             HHHhcCCH-HHHHHHHHHHHhhCCCCHHHHHHH
Q 019054          307 AYMALNDV-DAAVESFEKALKLEPNDGGIKKEL  338 (347)
Q Consensus       307 ~~~~~~~~-~~A~~~~~~al~l~P~~~~~~~~l  338 (347)
                      +...+|+. +.+.+.+.+....+|+++-+...-
T Consensus       244 ~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~~  276 (290)
T PF04733_consen  244 CSLHLGKPTEAAERYLSQLKQSNPNHPLVKDLA  276 (290)
T ss_dssp             HHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHHH
T ss_pred             HHHHhCCChhHHHHHHHHHHHhCCCChHHHHHH
Confidence            99999998 667788888888999988766544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=97.75  E-value=0.00054  Score=62.94  Aligned_cols=114  Identities=17%  Similarity=0.139  Sum_probs=88.2

Q ss_pred             HHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 019054          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (347)
Q Consensus       213 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  292 (347)
                      ......|...|+++.|..|.-.|..||++.......................-+...+..||+++++.+-|+.+..+.|.
T Consensus       177 ~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~  256 (569)
T PF15015_consen  177 QVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSIN  256 (569)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhh
Confidence            34455677788899999999999999987765332222222222224444445677899999999999999999999999


Q ss_pred             cCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 019054          293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALK  326 (347)
Q Consensus       293 ~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~  326 (347)
                      ++|.+...+.++|.++..+.+|.+|.+.+--|.-
T Consensus       257 lnP~~frnHLrqAavfR~LeRy~eAarSamia~y  290 (569)
T PF15015_consen  257 LNPSYFRNHLRQAAVFRRLERYSEAARSAMIADY  290 (569)
T ss_pred             cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999887655543

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.71  E-value=6.5e-05  Score=44.13  Aligned_cols=32  Identities=44%  Similarity=0.760  Sum_probs=23.3

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 019054          299 KALFRQGQAYMALNDVDAAVESFEKALKLEPN  330 (347)
Q Consensus       299 ~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  330 (347)
                      ++|+.+|.+|..+|++++|+..|+++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            46777777777777777777777777777763

...

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.70  E-value=0.00016  Score=66.27  Aligned_cols=105  Identities=17%  Similarity=0.165  Sum_probs=86.6

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  291 (347)
                      -.++.++||.+.-.|+|+.|+++|.+++.++.++.            ....-+...+.+|..|.-++++++||.+.++-|
T Consensus       235 RRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg------------~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHL  302 (639)
T KOG1130|consen  235 RRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELG------------NRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHL  302 (639)
T ss_pred             HHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhc------------chhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            45678899999999999999999999998765441            223345667889999999999999999999876


Q ss_pred             hcCC------CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 019054          292 RDGD------DNVKALFRQGQAYMALNDVDAAVESFEKALKLE  328 (347)
Q Consensus       292 ~~~p------~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~  328 (347)
                      .+..      ....+++-+|.+|-.+|..++|+...++.+++.
T Consensus       303 aIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s  345 (639)
T KOG1130|consen  303 AIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS  345 (639)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            5532      237899999999999999999999888877764

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.62  E-value=0.00019  Score=70.67  Aligned_cols=127  Identities=24%  Similarity=0.410  Sum_probs=108.3

Q ss_pred             chhHHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHc--CCh
Q 019054          203 NELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL--GDL  280 (347)
Q Consensus       203 ~~~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l--~~~  280 (347)
                      ++....+..+..++..||.+|.+++|..|...|..++.+.+.              ..........|.+.||+.+  ++|
T Consensus        44 ~di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~--------------~~~~~a~~~~~~~s~~m~~~l~~~  109 (748)
T KOG4151|consen   44 EDIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPK--------------DHHVVATLRSNQASCYMQLGLGEY  109 (748)
T ss_pred             cchHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccc--------------cchhhhhHHHHHHHHHhhcCccch
Confidence            456667778999999999999999999999999999885431              3456677888999888865  789


Q ss_pred             HHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 019054          281 KGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK  343 (347)
Q Consensus       281 ~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  343 (347)
                      .+++..|+-|+...|...+++..++.+|..++.++-|++++.-....+|.+..+..-+.+++.
T Consensus       110 ~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~  172 (748)
T KOG4151|consen  110 PKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKG  172 (748)
T ss_pred             hhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998889999999766664444443

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.61  E-value=9.1e-05  Score=66.55  Aligned_cols=109  Identities=18%  Similarity=0.226  Sum_probs=73.7

Q ss_pred             cCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh------
Q 019054          218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM------  291 (347)
Q Consensus       218 ~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al------  291 (347)
                      +|-.+|..|+|++|+..|+-+..                  .+.-...++.|+|.|++-+|.|.+|.....+|-      
T Consensus        63 ia~C~fhLgdY~~Al~~Y~~~~~------------------~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~  124 (557)
T KOG3785|consen   63 IAHCYFHLGDYEEALNVYTFLMN------------------KDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCI  124 (557)
T ss_pred             HHHHHHhhccHHHHHHHHHHHhc------------------cCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHH
Confidence            57788999999999999998876                  344455677888888888888888766555442      


Q ss_pred             --------hcCC------------CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054          292 --------RDGD------------DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (347)
Q Consensus       292 --------~~~p------------~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  344 (347)
                              +++.            +..+-..-+|.++++.-.|.+|++.|++.+.-+|.-..+...++.|.-+
T Consensus       125 RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyK  197 (557)
T KOG3785|consen  125 RLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYK  197 (557)
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHh
Confidence                    1110            1122334456666666777778888877777777666666666655443

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.55  E-value=0.00079  Score=65.12  Aligned_cols=112  Identities=10%  Similarity=-0.010  Sum_probs=94.5

Q ss_pred             HHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC
Q 019054          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (347)
Q Consensus       215 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~  294 (347)
                      +...++...-.+..++|++.++.+|+                  .-|....+|+.+|+++-.+++.+.|...|..-++..
T Consensus       654 ~mKs~~~er~ld~~eeA~rllEe~lk------------------~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c  715 (913)
T KOG0495|consen  654 WMKSANLERYLDNVEEALRLLEEALK------------------SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC  715 (913)
T ss_pred             hHHHhHHHHHhhhHHHHHHHHHHHHH------------------hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC
Confidence            34444455556777888888888888                  677888999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054          295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (347)
Q Consensus       295 p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  344 (347)
                      |.+...|..++.+-...|+.-.|...++++...+|.+...+-+.-+++.+
T Consensus       716 P~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR  765 (913)
T KOG0495|consen  716 PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELR  765 (913)
T ss_pred             CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHH
Confidence            99999999999999999999999999999999999998877766655544

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.54  E-value=0.00032  Score=59.07  Aligned_cols=78  Identities=21%  Similarity=0.154  Sum_probs=71.5

Q ss_pred             HhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 019054          260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKE  337 (347)
Q Consensus       260 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~  337 (347)
                      +...+.+++.+|..|-.+|-+.-|..++++++.+.|+-+.++..+|.-+...|+|+.|.+.|...++++|...-+..+
T Consensus        61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lN  138 (297)
T COG4785          61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLN  138 (297)
T ss_pred             hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhc
Confidence            445677899999999999999999999999999999999999999999999999999999999999999987665543

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.53  E-value=0.0008  Score=64.80  Aligned_cols=103  Identities=17%  Similarity=0.197  Sum_probs=90.3

Q ss_pred             HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (347)
Q Consensus       214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  293 (347)
                      .+.+.|..+|+..+|..+++.|...++++..            ...+...+....+++.||+++.+.++|.+++++|=+.
T Consensus       356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~------------D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~  423 (872)
T KOG4814|consen  356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIIS------------DNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV  423 (872)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhccc------------hhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Confidence            4688899999999999999999999996542            1245566889999999999999999999999999999


Q ss_pred             CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 019054          294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE  328 (347)
Q Consensus       294 ~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~  328 (347)
                      +|.++-..+..-.+...-+.-++|+.+..+.....
T Consensus       424 d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~  458 (872)
T KOG4814|consen  424 DRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSE  458 (872)
T ss_pred             ccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence            99999999999999999999999999987766543

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.50  E-value=0.00018  Score=61.24  Aligned_cols=73  Identities=14%  Similarity=-0.011  Sum_probs=65.7

Q ss_pred             HHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054          270 SSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (347)
Q Consensus       270 la~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  342 (347)
                      -|.+++.-+.|..|+..|.+||.++|..+..|-+++.+|+++.+|+.+..+..+|++++|+..-....|+...
T Consensus        16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~   88 (284)
T KOG4642|consen   16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWL   88 (284)
T ss_pred             ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHH
Confidence            4667778899999999999999999999999999999999999999999999999999998777776666553

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.50  E-value=8.4e-05  Score=43.80  Aligned_cols=34  Identities=26%  Similarity=0.461  Sum_probs=31.3

Q ss_pred             HHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHH
Q 019054          234 KYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALL  285 (347)
Q Consensus       234 ~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~  285 (347)
                      .|++||+                  ++|.++.+|+|+|.+|...|++++|++
T Consensus         1 ~y~kAie------------------~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIE------------------LNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHH------------------HCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            3789999                  999999999999999999999999963

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=97.49  E-value=0.0058  Score=52.55  Aligned_cols=104  Identities=20%  Similarity=0.181  Sum_probs=76.7

Q ss_pred             cCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChH-------HHHHHHHHH
Q 019054          218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLK-------GALLDTEFA  290 (347)
Q Consensus       218 ~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~-------~A~~~~~~a  290 (347)
                      .+..+-....+++|++.|.-|+-.....           .......+.+++.+|.+|..+++.+       .|+..|.+|
T Consensus        83 ~~~~~~~~Rt~~~ai~~YkLAll~~~~~-----------~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a  151 (214)
T PF09986_consen   83 KPRDFSGERTLEEAIESYKLALLCAQIK-----------KEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEA  151 (214)
T ss_pred             ccCCCCCCCCHHHHHHHHHHHHHHHHHh-----------CCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHH
Confidence            4446777889999999999998743221           1122356788999999999999944       555555555


Q ss_pred             hhcCC------CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 019054          291 MRDGD------DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG  332 (347)
Q Consensus       291 l~~~p------~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  332 (347)
                      ++...      +....+|.+|.++..+|++++|++.|.+.+..--.+.
T Consensus       152 ~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~  199 (214)
T PF09986_consen  152 YENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK  199 (214)
T ss_pred             HHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence            54432      2267899999999999999999999999998644333

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.48  E-value=0.00017  Score=42.24  Aligned_cols=33  Identities=30%  Similarity=0.261  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC
Q 019054          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN  297 (347)
Q Consensus       265 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~  297 (347)
                      .+|+.+|.+|.++|++++|+.+++++++++|++
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            578999999999999999999999999999854

...

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=97.45  E-value=0.0034  Score=48.88  Aligned_cols=84  Identities=13%  Similarity=0.156  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHHHcCC---hHHHHHHHHHHhh-cCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 019054          263 KSQIFTNSSACKLKLGD---LKGALLDTEFAMR-DGDD-NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKE  337 (347)
Q Consensus       263 ~~~~~~nla~~~~~l~~---~~~A~~~~~~al~-~~p~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~  337 (347)
                      .....+|+|.++.+..+   .++.+..++..++ -.|+ .-.++|.++..++.+++|+.|+.+....++.+|+|.++...
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L  110 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL  110 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            44567888888887654   6677888888886 4554 36789999999999999999999999999999999999998


Q ss_pred             HHHHHHHhc
Q 019054          338 LAVAKKKVS  346 (347)
Q Consensus       338 l~~~~~~~~  346 (347)
                      -..+++++.
T Consensus       111 k~~ied~it  119 (149)
T KOG3364|consen  111 KETIEDKIT  119 (149)
T ss_pred             HHHHHHHHh
Confidence            888888764

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.41  E-value=0.0035  Score=53.52  Aligned_cols=107  Identities=19%  Similarity=0.210  Sum_probs=82.8

Q ss_pred             HHHHHHcCccccch-hhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          212 VDSIKVFGNEHYKK-QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       212 a~~~~~~g~~~~~~-g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      |..+..+|..|-.. .++++||.+|++|-++..-            ......--.++...|.....+++|.+|+..|+++
T Consensus       113 Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~------------ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqv  180 (288)
T KOG1586|consen  113 AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKG------------EESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQV  180 (288)
T ss_pred             HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc------------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556677666544 8999999999999986531            1133344467888888888999999999999999


Q ss_pred             hhcCCCC------hhH-HHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 019054          291 MRDGDDN------VKA-LFRQGQAYMALNDVDAAVESFEKALKLEPN  330 (347)
Q Consensus       291 l~~~p~~------~~a-~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  330 (347)
                      .+..-+|      +|- ++.-|.|++...+.-.|...+++..+++|.
T Consensus       181 a~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~  227 (288)
T KOG1586|consen  181 ARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA  227 (288)
T ss_pred             HHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence            8766555      344 455688999989999999999999999996

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.40  E-value=0.00045  Score=60.87  Aligned_cols=94  Identities=19%  Similarity=0.222  Sum_probs=79.0

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .|..+.+.|-.+|+.|+|++|++.|+.|++                  .....+-+-+|+|.|+++.++|..|+.+..+.
T Consensus       143 ~Ad~~in~gCllykegqyEaAvqkFqaAlq------------------vsGyqpllAYniALaHy~~~qyasALk~iSEI  204 (459)
T KOG4340|consen  143 EADGQINLGCLLYKEGQYEAAVQKFQAALQ------------------VSGYQPLLAYNLALAHYSSRQYASALKHISEI  204 (459)
T ss_pred             ccchhccchheeeccccHHHHHHHHHHHHh------------------hcCCCchhHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            466778899999999999999999999999                  66667778899999999999999999999998


Q ss_pred             hhc----CCCC-------------------------hhHHHHHHHHHHhcCCHHHHHHHHH
Q 019054          291 MRD----GDDN-------------------------VKALFRQGQAYMALNDVDAAVESFE  322 (347)
Q Consensus       291 l~~----~p~~-------------------------~~a~~~~g~~~~~~~~~~~A~~~~~  322 (347)
                      ++.    .|.-                         .+|+...+-++++.++++.|.+.+.
T Consensus       205 ieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt  265 (459)
T KOG4340|consen  205 IERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT  265 (459)
T ss_pred             HHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence            843    2221                         3577778888999999999887653

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.37  E-value=0.003  Score=52.43  Aligned_cols=102  Identities=16%  Similarity=0.114  Sum_probs=80.9

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  291 (347)
                      +......+..++..+++++|+..+..++....               .......+-.++|.+...+|++++|+..++..-
T Consensus        89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~---------------De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~  153 (207)
T COG2976          89 VLAALELAKAEVEANNLDKAEAQLKQALAQTK---------------DENLKALAALRLARVQLQQKKADAALKTLDTIK  153 (207)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHccch---------------hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc
Confidence            34557788888999999999999999997321               444566778899999999999999998766544


Q ss_pred             hcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 019054          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP  329 (347)
Q Consensus       292 ~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P  329 (347)
                      .-.- .+..--.+|.++...|+-++|...|+++++.++
T Consensus       154 ~~~w-~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~  190 (207)
T COG2976         154 EESW-AAIVAELRGDILLAKGDKQEARAAYEKALESDA  190 (207)
T ss_pred             cccH-HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence            3211 123356789999999999999999999999984

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.37  E-value=0.00076  Score=43.97  Aligned_cols=43  Identities=16%  Similarity=0.047  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHH
Q 019054          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQA  307 (347)
Q Consensus       265 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~  307 (347)
                      ++++.+|..+.++|+|.+|..+++.+|+++|+|.++......+
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i   44 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI   44 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence            3678899999999999999999999999999998886655443

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.34  E-value=0.0029  Score=60.55  Aligned_cols=122  Identities=15%  Similarity=0.122  Sum_probs=85.9

Q ss_pred             HHHHcCccccchhhHHHHHHHHHHHHHHhhh------------ccccCCCChhhh-hhHHhhHHHHHHHHHHHHHHcCCh
Q 019054          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDI------------CWEKEGIDEGKS-SSLRKTKSQIFTNSSACKLKLGDL  280 (347)
Q Consensus       214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~------------~~~~~~~~~~~~-~~~~~~~~~~~~nla~~~~~l~~~  280 (347)
                      .+.-.|..+|+.++|++|+..|+..++.-..            +.......-.+. ..........++|.|..+...|+|
T Consensus       112 ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky  191 (652)
T KOG2376|consen  112 LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKY  191 (652)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccH
Confidence            4455788999999999999999988662110            000000000000 001123557899999999999999


Q ss_pred             HHHHHHHHHHhhcC-------CCC--------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 019054          281 KGALLDTEFAMRDG-------DDN--------VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIK  335 (347)
Q Consensus       281 ~~A~~~~~~al~~~-------p~~--------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~  335 (347)
                      .+|++.+++|+++.       ..+        .-+...++.++..+|+-++|...|...++.+|.|....
T Consensus       192 ~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~  261 (652)
T KOG2376|consen  192 NQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSL  261 (652)
T ss_pred             HHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHH
Confidence            99999999995331       111        24667789999999999999999999999999877543

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.30  E-value=0.00093  Score=63.82  Aligned_cols=108  Identities=20%  Similarity=0.206  Sum_probs=92.8

Q ss_pred             cCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhh-HHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC
Q 019054          218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKT-KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD  296 (347)
Q Consensus       218 ~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~  296 (347)
                      .|--+...|+...|+.++..|+.                  +.|. ...-..|+|.+.++-+....|-..+.++|.+.-.
T Consensus       613 aglywr~~gn~~~a~~cl~~a~~------------------~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~s  674 (886)
T KOG4507|consen  613 AGLYWRAVGNSTFAIACLQRALN------------------LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSS  674 (886)
T ss_pred             ccceeeecCCcHHHHHHHHHHhc------------------cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhccc
Confidence            34444468999999999999998                  3332 2244789999999999999999999999999988


Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 019054          297 NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK  343 (347)
Q Consensus       297 ~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  343 (347)
                      .+-.+|-+|.+|..+.+.+.|++.|+.|++++|+++++...|..+.-
T Consensus       675 epl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c  721 (886)
T KOG4507|consen  675 EPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC  721 (886)
T ss_pred             CchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence            88999999999999999999999999999999999999988877643

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.30  E-value=0.0056  Score=56.06  Aligned_cols=119  Identities=13%  Similarity=0.092  Sum_probs=99.3

Q ss_pred             hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (347)
Q Consensus       210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~  289 (347)
                      ..+......|..-+-.|+|.+|.....++-+                  ..+.-..+|.--|.+...+|+++.|-.+..+
T Consensus        82 rra~~~~~egl~~l~eG~~~qAEkl~~rnae------------------~~e~p~l~~l~aA~AA~qrgd~~~an~yL~e  143 (400)
T COG3071          82 RRARKALNEGLLKLFEGDFQQAEKLLRRNAE------------------HGEQPVLAYLLAAEAAQQRGDEDRANRYLAE  143 (400)
T ss_pred             HHHHHHHHHHHHHHhcCcHHHHHHHHHHhhh------------------cCcchHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            3566677778888889999999999988776                  5566667788888889999999999999999


Q ss_pred             HhhcCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          290 AMRDGDD-NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       290 al~~~p~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      |-+..++ +......++......++++.|.....++++..|.++++.....++...++
T Consensus       144 aae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g  201 (400)
T COG3071         144 AAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLG  201 (400)
T ss_pred             HhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhc
Confidence            9998554 46678889999999999999999999999999999998887777665543

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=97.26  E-value=0.00063  Score=61.44  Aligned_cols=103  Identities=24%  Similarity=0.228  Sum_probs=84.2

Q ss_pred             HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (347)
Q Consensus       214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  293 (347)
                      .+..+|+++.-.+.|+++++.|++|++++....            ..-.-..++..+|..|..++++++|+-+..+|.++
T Consensus       124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~------------D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~l  191 (518)
T KOG1941|consen  124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNND------------DAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAEL  191 (518)
T ss_pred             hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccC------------CceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHH
Confidence            445689999999999999999999999765320            11123457899999999999999999999999876


Q ss_pred             CCC----C------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 019054          294 GDD----N------VKALFRQGQAYMALNDVDAAVESFEKALKLE  328 (347)
Q Consensus       294 ~p~----~------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~  328 (347)
                      -.+    +      .-++|+++.++..+|+.-.|.++.++|.++.
T Consensus       192 v~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla  236 (518)
T KOG1941|consen  192 VNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA  236 (518)
T ss_pred             HHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence            432    1      3478899999999999999999999998875

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.25  E-value=0.00064  Score=62.70  Aligned_cols=146  Identities=23%  Similarity=0.250  Sum_probs=110.4

Q ss_pred             eeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCC--cccCC---CC
Q 019054           17 EGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGE--SIYGL---KF   91 (347)
Q Consensus        17 ~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~--~~~~~---~~   91 (347)
                      .--|.|+++.+-.|.-++-|...|.-.           |+++..|.+|+..+++|.||.......+|.  .+.+.   +|
T Consensus       111 ~s~IAVs~~~sg~i~VvD~~~d~~q~~-----------~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qf  179 (558)
T KOG0882|consen  111 ISLIAVSLFKSGKIFVVDGFGDFCQDG-----------YFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQF  179 (558)
T ss_pred             eeeEEeecccCCCcEEECCcCCcCccc-----------eecccccCceEEEEeeccccceeeccccceeEeecCCCcccC
Confidence            348999999999999999999999876           899999999999999999987544333322  11122   23


Q ss_pred             CC--CccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCccccceEecc
Q 019054           92 ED--ENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITD  169 (347)
Q Consensus        92 ~~--e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P~~~v~I~~  169 (347)
                      ++  .++.++|.. -+......-..-.+-+|+++-...+.+..+-.|+|.+..+-++++.|....++....|..++.|..
T Consensus       180 Pr~~l~~~~K~eT-dLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~  258 (558)
T KOG0882|consen  180 PRTNLNFELKHET-DLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMH  258 (558)
T ss_pred             ccccccccccccc-hhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccce
Confidence            33  355666653 344343333333466788887777888889999999999999999999999998888999888887


Q ss_pred             ceecC
Q 019054          170 CGEIP  174 (347)
Q Consensus       170 ~g~~~  174 (347)
                      ....+
T Consensus       259 VelgR  263 (558)
T KOG0882|consen  259 VELGR  263 (558)
T ss_pred             eehhh
Confidence            76553

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.24  E-value=0.0015  Score=63.56  Aligned_cols=97  Identities=14%  Similarity=0.087  Sum_probs=87.2

Q ss_pred             HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (347)
Q Consensus       214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  293 (347)
                      .+.-++..+-..|+|++|+++..+||.                  ..|..+.+|+..|.++-++|++.+|....+.|-.+
T Consensus       196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~------------------htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L  257 (517)
T PF12569_consen  196 TLYFLAQHYDYLGDYEKALEYIDKAIE------------------HTPTLVELYMTKARILKHAGDLKEAAEAMDEAREL  257 (517)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHh------------------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence            456667777789999999999999999                  88999999999999999999999999999999999


Q ss_pred             CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 019054          294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE  328 (347)
Q Consensus       294 ~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~  328 (347)
                      |+.+--.....+..+.+.|+.++|.+.+..--+-+
T Consensus       258 D~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~  292 (517)
T PF12569_consen  258 DLADRYINSKCAKYLLRAGRIEEAEKTASLFTRED  292 (517)
T ss_pred             ChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence            99988888888999999999999999887665443

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.23  E-value=0.00058  Score=39.52  Aligned_cols=31  Identities=39%  Similarity=0.702  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 019054          300 ALFRQGQAYMALNDVDAAVESFEKALKLEPN  330 (347)
Q Consensus       300 a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  330 (347)
                      |++++|.++..+|++++|+..|+++++..|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            4566666666666666666666666666554

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.21  E-value=0.00082  Score=60.56  Aligned_cols=85  Identities=21%  Similarity=0.211  Sum_probs=67.9

Q ss_pred             ccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHH
Q 019054          222 HYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKAL  301 (347)
Q Consensus       222 ~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~  301 (347)
                      +..+++|..|+...+-.+.          .++|+.       .....-+|.|++.+|+|++|+..|+.+...+..+++.+
T Consensus        32 fls~rDytGAislLefk~~----------~~~EEE-------~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~   94 (557)
T KOG3785|consen   32 FLSNRDYTGAISLLEFKLN----------LDREEE-------DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELG   94 (557)
T ss_pred             HHhcccchhHHHHHHHhhc----------cchhhh-------HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccc
Confidence            4456889999988876664          222221       23445589999999999999999999999888889999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHH
Q 019054          302 FRQGQAYMALNDVDAAVESFEK  323 (347)
Q Consensus       302 ~~~g~~~~~~~~~~~A~~~~~~  323 (347)
                      .++|.+++-+|.|.+|...-.+
T Consensus        95 vnLAcc~FyLg~Y~eA~~~~~k  116 (557)
T KOG3785|consen   95 VNLACCKFYLGQYIEAKSIAEK  116 (557)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999876544

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.19  E-value=0.00056  Score=63.95  Aligned_cols=79  Identities=18%  Similarity=0.161  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHhh---------cCC---------CChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 019054          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMR---------DGD---------DNVKALFRQGQAYMALNDVDAAVESFEKA  324 (347)
Q Consensus       263 ~~~~~~nla~~~~~l~~~~~A~~~~~~al~---------~~p---------~~~~a~~~~g~~~~~~~~~~~A~~~~~~a  324 (347)
                      ....|+|+|.++++++.|.-++.+|.+||+         +.|         .+...+|+.|..|...|+.-.|.++|.++
T Consensus       282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a  361 (696)
T KOG2471|consen  282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA  361 (696)
T ss_pred             hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence            456689999999999999999999999995         111         23578999999999999999999999999


Q ss_pred             HhhCCCCHHHHHHHHHH
Q 019054          325 LKLEPNDGGIKKELAVA  341 (347)
Q Consensus       325 l~l~P~~~~~~~~l~~~  341 (347)
                      .+..-.+|.+|-.|+++
T Consensus       362 v~vfh~nPrlWLRlAEc  378 (696)
T KOG2471|consen  362 VHVFHRNPRLWLRLAEC  378 (696)
T ss_pred             HHHHhcCcHHHHHHHHH
Confidence            99999999999998876

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=97.18  E-value=0.0015  Score=57.84  Aligned_cols=74  Identities=23%  Similarity=0.219  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 019054          266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELA  339 (347)
Q Consensus       266 ~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~  339 (347)
                      +-.+.|.-..+.|+.++|...+..|+.++|++++++...|+...+-++.-+|-.+|-+|+.++|.+.++..+..
T Consensus       118 ~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~  191 (472)
T KOG3824|consen  118 LALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA  191 (472)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence            33445555668899999999999999999999999999999999999999999999999999999998876544

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.18  E-value=0.0027  Score=55.09  Aligned_cols=72  Identities=17%  Similarity=0.163  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q 019054          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI  334 (347)
Q Consensus       263 ~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~---~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~  334 (347)
                      -+.-+++-|...+..|+|.+|+..++.+....|.+   .++..-++.+++..++|++|+...++.+++.|.++.+
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~  107 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA  107 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence            45568888999999999999999999999988865   6899999999999999999999999999999987764

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.15  E-value=0.0039  Score=54.16  Aligned_cols=115  Identities=15%  Similarity=0.122  Sum_probs=87.2

Q ss_pred             HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (347)
Q Consensus       214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  293 (347)
                      -...+|...++.|+-+.|..++++.-+-...+            +--........|.+.+|.-.++|.+|...+++.+..
T Consensus       214 L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL------------~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~  281 (366)
T KOG2796|consen  214 LLSGLGRISMQIGDIKTAEKYFQDVEKVTQKL------------DGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM  281 (366)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh------------hccchhHHHHhhhhhheecccchHHHHHHHhhcccc
Confidence            34556667777777777777776443311100            112234566788999999999999999999999999


Q ss_pred             CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHH
Q 019054          294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN---DGGIKKELAV  340 (347)
Q Consensus       294 ~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~---~~~~~~~l~~  340 (347)
                      ||.++.+..+.|.|++-+|+...|++..+.+++..|.   +..+..+|..
T Consensus       282 D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~t  331 (366)
T KOG2796|consen  282 DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTT  331 (366)
T ss_pred             CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHH
Confidence            9999999999999999999999999999999999996   3334444443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.13  E-value=0.00043  Score=41.31  Aligned_cols=25  Identities=36%  Similarity=0.551  Sum_probs=12.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHH
Q 019054          301 LFRQGQAYMALNDVDAAVESFEKAL  325 (347)
Q Consensus       301 ~~~~g~~~~~~~~~~~A~~~~~~al  325 (347)
                      |.++|.+|..+|+|++|+..|++++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4445555555555555555555533

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.12  E-value=0.0029  Score=61.22  Aligned_cols=107  Identities=15%  Similarity=0.125  Sum_probs=86.0

Q ss_pred             HhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 019054          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (347)
Q Consensus       209 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~  288 (347)
                      ++.+.-+...|..+..+|+.++|++.|++++..              .....+....+++.+|.|++-+.+|++|..++.
T Consensus       264 P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~--------------q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~  329 (468)
T PF10300_consen  264 PNSALFLFFEGRLERLKGNLEEAIESFERAIES--------------QSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFL  329 (468)
T ss_pred             CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccc--------------hhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHH
Confidence            334666788899999999999999999999861              122556677889999999999999999999999


Q ss_pred             HHhhcCCCC-hhHHHHHHHHHHhcCCH-------HHHHHHHHHHHhhCC
Q 019054          289 FAMRDGDDN-VKALFRQGQAYMALNDV-------DAAVESFEKALKLEP  329 (347)
Q Consensus       289 ~al~~~p~~-~~a~~~~g~~~~~~~~~-------~~A~~~~~~al~l~P  329 (347)
                      +.++.+.-+ +-..|..|.++.++++.       ++|.+.|.++-.+-.
T Consensus       330 ~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~  378 (468)
T PF10300_consen  330 RLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ  378 (468)
T ss_pred             HHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence            999876432 33456679999999999       888888888776643

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.11  E-value=0.00078  Score=38.94  Aligned_cols=33  Identities=21%  Similarity=0.274  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC
Q 019054          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN  297 (347)
Q Consensus       265 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~  297 (347)
                      .+++++|.|+.++|++++|+..++++++..|++
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            368899999999999999999999999999975

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.10  E-value=0.0079  Score=50.33  Aligned_cols=67  Identities=34%  Similarity=0.381  Sum_probs=38.1

Q ss_pred             HHHHcCChHHHHHHHHHHhhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-CHHHHHHHH
Q 019054          273 CKLKLGDLKGALLDTEFAMRDGD---DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN-DGGIKKELA  339 (347)
Q Consensus       273 ~~~~l~~~~~A~~~~~~al~~~p---~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~-~~~~~~~l~  339 (347)
                      ++...+++++|+..+.+++...|   .....++.++..+...+++++|+..+.++++..|. .......+.
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  209 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLG  209 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhh
Confidence            56666666666666666665554   23445555555555666666666666666666665 334333333

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.08  E-value=0.00045  Score=41.22  Aligned_cols=29  Identities=21%  Similarity=0.105  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcC
Q 019054          266 IFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (347)
Q Consensus       266 ~~~nla~~~~~l~~~~~A~~~~~~al~~~  294 (347)
                      +|.++|.+|.++|+|++|+.+|+++|.+.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            47899999999999999999999977553

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.07  E-value=0.0047  Score=54.63  Aligned_cols=101  Identities=11%  Similarity=0.013  Sum_probs=82.1

Q ss_pred             cchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHH
Q 019054          223 YKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALF  302 (347)
Q Consensus       223 ~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~  302 (347)
                      .+..+|.+||+....-.+                  ..|.....+..+|.||....+|..|..+|++...+.|...+.-+
T Consensus        21 I~d~ry~DaI~~l~s~~E------------------r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrl   82 (459)
T KOG4340|consen   21 IRDARYADAIQLLGSELE------------------RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRL   82 (459)
T ss_pred             HHHhhHHHHHHHHHHHHh------------------cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHH
Confidence            466788888888877776                  56666677888999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054          303 RQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV  345 (347)
Q Consensus       303 ~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  345 (347)
                      ..++.++..+.|..|++......    +++..+...-+++..+
T Consensus        83 Y~AQSLY~A~i~ADALrV~~~~~----D~~~L~~~~lqLqaAI  121 (459)
T KOG4340|consen   83 YQAQSLYKACIYADALRVAFLLL----DNPALHSRVLQLQAAI  121 (459)
T ss_pred             HHHHHHHHhcccHHHHHHHHHhc----CCHHHHHHHHHHHHHH
Confidence            99999999999999998765433    3456666555555443

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.03  E-value=0.012  Score=51.31  Aligned_cols=66  Identities=18%  Similarity=0.096  Sum_probs=52.7

Q ss_pred             CChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 019054          278 GDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK  343 (347)
Q Consensus       278 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  343 (347)
                      +++..|.-.|++.-...|..+..+.-++.|.+.+++|++|...++.|+..++++++...++-.+-.
T Consensus       187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~  252 (299)
T KOG3081|consen  187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLAL  252 (299)
T ss_pred             hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence            447788888888887777788888888888888888888888888888888888888777766543

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.00  E-value=0.013  Score=51.98  Aligned_cols=113  Identities=19%  Similarity=0.203  Sum_probs=91.3

Q ss_pred             HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH----
Q 019054          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF----  289 (347)
Q Consensus       214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~----  289 (347)
                      .....+..+...+++.+|...+..++.                  ..+.+..+...++.||...|+.+.|...+..    
T Consensus       136 ~~~~~~~~~~~~e~~~~a~~~~~~al~------------------~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~  197 (304)
T COG3118         136 EALAEAKELIEAEDFGEAAPLLKQALQ------------------AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQ  197 (304)
T ss_pred             HHHHHhhhhhhccchhhHHHHHHHHHH------------------hCcccchHHHHHHHHHHHcCChHHHHHHHHhCccc
Confidence            346667788899999999999999999                  7777788899999999999999776554433    


Q ss_pred             ------------------------------HhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CHHHHHH
Q 019054          290 ------------------------------AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN--DGGIKKE  337 (347)
Q Consensus       290 ------------------------------al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~--~~~~~~~  337 (347)
                                                    .+..+|++..+-+.+|..|...|+.++|++.+-..++.+-.  |..+++.
T Consensus       198 ~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~  277 (304)
T COG3118         198 AQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKT  277 (304)
T ss_pred             chhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHH
Confidence                                          12558999999999999999999999999999888888653  5667766


Q ss_pred             HHHHHHH
Q 019054          338 LAVAKKK  344 (347)
Q Consensus       338 l~~~~~~  344 (347)
                      |-.+...
T Consensus       278 lle~f~~  284 (304)
T COG3118         278 LLELFEA  284 (304)
T ss_pred             HHHHHHh
Confidence            6655443

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.96  E-value=0.0037  Score=63.84  Aligned_cols=64  Identities=11%  Similarity=0.020  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019054          264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL  327 (347)
Q Consensus       264 ~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l  327 (347)
                      ...|..+..++...|+++.|...+++++.+.|++...|..+..+|...|++++|.+.+++..+.
T Consensus       494 ~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~  557 (697)
T PLN03081        494 VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK  557 (697)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence            3568888888889999999999999999999999999999999999999999999999887755

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.95  E-value=0.0047  Score=55.32  Aligned_cols=79  Identities=15%  Similarity=0.114  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 019054          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN----VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (347)
Q Consensus       263 ~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~----~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l  338 (347)
                      .+.-|-.-|.-|++.++|..|+..|++.|+..-.+    +-.|.+||-|...+|+|..|+.++.++++++|.+..+...=
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~  159 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG  159 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence            44556677899999999999999999999876443    66799999999999999999999999999999877654443


Q ss_pred             HHH
Q 019054          339 AVA  341 (347)
Q Consensus       339 ~~~  341 (347)
                      ++|
T Consensus       160 Akc  162 (390)
T KOG0551|consen  160 AKC  162 (390)
T ss_pred             hHH
Confidence            333

>smart00028 TPR Tetratricopeptide repeats

Probab=96.95  E-value=0.0015  Score=36.69  Aligned_cols=30  Identities=53%  Similarity=0.916  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 019054          300 ALFRQGQAYMALNDVDAAVESFEKALKLEP  329 (347)
Q Consensus       300 a~~~~g~~~~~~~~~~~A~~~~~~al~l~P  329 (347)
                      +++++|.++..++++++|+..|+++++++|
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            445555555555555555555555555544

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=96.93  E-value=0.004  Score=51.14  Aligned_cols=65  Identities=26%  Similarity=0.283  Sum_probs=53.7

Q ss_pred             hHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCH----------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054          280 LKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDV----------DAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (347)
Q Consensus       280 ~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~----------~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  344 (347)
                      |+.|.+.++.....+|.++.++++-|.++..+.++          ++|+.-|++|+.++|+..++...++.+.-.
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts   81 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTS   81 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence            78899999999999999999999999999887554          568888999999999999999988877644

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=96.91  E-value=0.011  Score=51.88  Aligned_cols=77  Identities=19%  Similarity=0.147  Sum_probs=69.6

Q ss_pred             HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 019054          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIK  335 (347)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~  335 (347)
                      .......+..|+=..++..++++.|....++.+.++|.++.-+.-+|.+|.++|.+.-|+.+++..++..|+++.+.
T Consensus       176 ~~~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~  252 (269)
T COG2912         176 NREILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAE  252 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHH
Confidence            44455667788888999999999999999999999999999999999999999999999999999999999987643

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=96.90  E-value=0.012  Score=49.09  Aligned_cols=64  Identities=33%  Similarity=0.443  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhhcCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 019054          267 FTNSSACKLKLGDLKGALLDTEFAMRDGDD-NVKALFRQGQAYMALNDVDAAVESFEKALKLEPN  330 (347)
Q Consensus       267 ~~nla~~~~~l~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  330 (347)
                      +..++..+...++++.|+..+.+++...+. ....+..++.++...+++++|+..+.+++...|.
T Consensus       170 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  234 (291)
T COG0457         170 LLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD  234 (291)
T ss_pred             HHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence            333333344445555555555555555544 3455555555555555555555555555555443

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.90  E-value=0.0099  Score=57.08  Aligned_cols=70  Identities=20%  Similarity=0.237  Sum_probs=58.8

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH--HHHHHHH
Q 019054          268 TNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG--IKKELAV  340 (347)
Q Consensus       268 ~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~--~~~~l~~  340 (347)
                      +..|.|.+++++.++|+..++   -+++.+.+.+..+|+.++.+++|++|+..|+...+-+-++.+  .+.++..
T Consensus        83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a  154 (652)
T KOG2376|consen   83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLA  154 (652)
T ss_pred             HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence            678999999999999999988   667778899999999999999999999999999887765443  4444433

>smart00028 TPR Tetratricopeptide repeats

Probab=96.83  E-value=0.002  Score=36.15  Aligned_cols=33  Identities=33%  Similarity=0.301  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC
Q 019054          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN  297 (347)
Q Consensus       265 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~  297 (347)
                      .++.++|.++..++++++|+..++++++++|++
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            468899999999999999999999999998853

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=96.79  E-value=0.00096  Score=62.48  Aligned_cols=65  Identities=17%  Similarity=0.097  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 019054          267 FTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND  331 (347)
Q Consensus       267 ~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  331 (347)
                      +-+-|.-+++-+.|+.|+..|.+||+++|+++..+-+|+.++...++|..|+.++.+|++++|..
T Consensus         7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~   71 (476)
T KOG0376|consen    7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY   71 (476)
T ss_pred             hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchh
Confidence            34456677888999999999999999999999999999999999999999999999999999963

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.75  E-value=0.0068  Score=55.00  Aligned_cols=75  Identities=20%  Similarity=0.210  Sum_probs=63.7

Q ss_pred             HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 019054          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN-----VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG  333 (347)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~-----~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~  333 (347)
                      .......++.|++..+.++.++.+++.++...+.+.-..     ..++.-+|.++..++.|+++++.|++|++..-++.+
T Consensus        78 ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D  157 (518)
T KOG1941|consen   78 DSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDD  157 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCC
Confidence            344567899999999999999999999999998775443     478888999999999999999999999998654433

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.75  E-value=0.011  Score=49.24  Aligned_cols=100  Identities=21%  Similarity=0.177  Sum_probs=79.6

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  291 (347)
                      -..+..+|+.|.+.|++++|++.|.++..+..               .......+++++-.+.+..++|..+..+..+|-
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~---------------~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~  100 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCT---------------SPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE  100 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC---------------CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            35678899999999999999999999887432               455677889999999999999999999999986


Q ss_pred             hcCC--CCh----hHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 019054          292 RDGD--DNV----KALFRQGQAYMALNDVDAAVESFEKALK  326 (347)
Q Consensus       292 ~~~p--~~~----~a~~~~g~~~~~~~~~~~A~~~~~~al~  326 (347)
                      .+-.  .++    +.....|.+++..++|.+|...|-.+..
T Consensus       101 ~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~  141 (177)
T PF10602_consen  101 SLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLS  141 (177)
T ss_pred             HHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence            5432  222    3444567888889999999998866643

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.74  E-value=0.00037  Score=62.46  Aligned_cols=70  Identities=16%  Similarity=0.174  Sum_probs=60.5

Q ss_pred             HHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054          275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (347)
Q Consensus       275 ~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  344 (347)
                      +..|.+++|+++|..||.++|..+..|-.++.++..+++...|+++|..|++++|+...-...-..+++.
T Consensus       125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rl  194 (377)
T KOG1308|consen  125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERL  194 (377)
T ss_pred             hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHH
Confidence            3467799999999999999999999999999999999999999999999999999876644444444443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.73  E-value=0.0095  Score=54.58  Aligned_cols=111  Identities=14%  Similarity=0.004  Sum_probs=79.7

Q ss_pred             HHcCccccchhhHHHHHHHHHHHHHHhh---------hccccCCCC----hhhhhhHHhhHHHHHHHHHHHHHHcCChHH
Q 019054          216 KVFGNEHYKKQDYKMALRKYRKALRYLD---------ICWEKEGID----EGKSSSLRKTKSQIFTNSSACKLKLGDLKG  282 (347)
Q Consensus       216 ~~~g~~~~~~g~y~~A~~~y~~al~~~~---------~~~~~~~~~----~~~~~~~~~~~~~~~~nla~~~~~l~~~~~  282 (347)
                      ...+.-+...|++++|.+....+++.--         .+...++..    -+.+....|..+.++..+|..|++.+.|.+
T Consensus       267 ~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~k  346 (400)
T COG3071         267 VAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGK  346 (400)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHH
Confidence            3445556677889999988888876321         111111111    133445667777888888999999999999


Q ss_pred             HHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019054          283 ALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL  327 (347)
Q Consensus       283 A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l  327 (347)
                      |-.+++.|+...| +...+..+|.++.++|+.++|.+.+++++.+
T Consensus       347 A~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~  390 (400)
T COG3071         347 ASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALLL  390 (400)
T ss_pred             HHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            9999998888876 5666777888899999999998888888754

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.66  E-value=0.044  Score=51.97  Aligned_cols=111  Identities=14%  Similarity=0.036  Sum_probs=79.3

Q ss_pred             hHHHHHHHHHHHHHHhhhccccCCCChh---hh----hhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC--C
Q 019054          227 DYKMALRKYRKALRYLDICWEKEGIDEG---KS----SSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD--N  297 (347)
Q Consensus       227 ~y~~A~~~y~~al~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~--~  297 (347)
                      -..+|.++|++|++..+...........   ..    ........-+-..+|.|..++|+.++|++.+...++..|.  +
T Consensus       215 Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~  294 (539)
T PF04184_consen  215 TIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDN  294 (539)
T ss_pred             CHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccch
Confidence            4678899999999877654433221111   00    1111223456678999999999999999999999988774  4


Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCCHHHHHH
Q 019054          298 VKALFRQGQAYMALNDVDAAVESFEKALKL-EPNDGGIKKE  337 (347)
Q Consensus       298 ~~a~~~~g~~~~~~~~~~~A~~~~~~al~l-~P~~~~~~~~  337 (347)
                      -..++++-.++..++.|.++...+.+.-.+ -|....+...
T Consensus       295 l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YT  335 (539)
T PF04184_consen  295 LNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYT  335 (539)
T ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHH
Confidence            668999999999999999999999887654 2445544433

The molecular function of this protein is uncertain.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.64  E-value=0.013  Score=52.67  Aligned_cols=107  Identities=15%  Similarity=0.154  Sum_probs=77.1

Q ss_pred             cCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHH-cCChHHHHHHHHHHhhcCCC
Q 019054          218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK-LGDLKGALLDTEFAMRDGDD  296 (347)
Q Consensus       218 ~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-l~~~~~A~~~~~~al~~~p~  296 (347)
                      ..+..-+.+..+.|...|.+|+.                  .......+|...|....+ .++.+.|...|+.+++..|.
T Consensus         7 ~m~~~~r~~g~~~aR~vF~~a~~------------------~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~   68 (280)
T PF05843_consen    7 YMRFMRRTEGIEAARKVFKRARK------------------DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS   68 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHC------------------CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhCChHHHHHHHHHHHc------------------CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC
Confidence            33444555668888888888876                  444556778888888666 46666699999999999998


Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHH
Q 019054          297 NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG---GIKKELAVAK  342 (347)
Q Consensus       297 ~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~---~~~~~l~~~~  342 (347)
                      +...|.....-+..+++.+.|...|++++..-|.+.   .++......+
T Consensus        69 ~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE  117 (280)
T PF05843_consen   69 DPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFE  117 (280)
T ss_dssp             -HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence            888888888888889999999999999988877655   3444444333

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.55  E-value=0.0039  Score=53.02  Aligned_cols=61  Identities=26%  Similarity=0.342  Sum_probs=56.5

Q ss_pred             HHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 019054          273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG  333 (347)
Q Consensus       273 ~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~  333 (347)
                      ...+.++.+.|.+.+.+|+++-|.....|+|+|......|+++.|.+.|++.++++|.|..
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~   64 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG   64 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence            3456789999999999999999999999999999999999999999999999999997654

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.54  E-value=0.051  Score=45.02  Aligned_cols=65  Identities=18%  Similarity=0.193  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhh-cCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 019054          266 IFTNSSACKLKLGDLKGALLDTEFAMR-DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN  330 (347)
Q Consensus       266 ~~~nla~~~~~l~~~~~A~~~~~~al~-~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  330 (347)
                      -.+.+|....++|++.+|..+|++++. +..+++..+.-++++....+++.+|...+++..+.+|.
T Consensus        91 nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa  156 (251)
T COG4700          91 NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA  156 (251)
T ss_pred             HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc
Confidence            366789999999999999999999986 56788999999999999999999999999999999985

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.54  E-value=0.017  Score=42.34  Aligned_cols=63  Identities=17%  Similarity=0.276  Sum_probs=49.6

Q ss_pred             HHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHh
Q 019054          283 ALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN--DGGIKKELAVAKKKV  345 (347)
Q Consensus       283 A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~--~~~~~~~l~~~~~~~  345 (347)
                      .+..++++++.+|++..+.+.+|.++...|++++|++.+..+++.+|.  +..+++.|-.+-..+
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~l   71 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELL   71 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHc
Confidence            356678889999999999999999999999999999999999999885  466777776665554

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.53  E-value=0.049  Score=47.61  Aligned_cols=75  Identities=15%  Similarity=0.150  Sum_probs=62.5

Q ss_pred             HhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHH-HHHHHhhCCCCHHH
Q 019054          260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVES-FEKALKLEPNDGGI  334 (347)
Q Consensus       260 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~-~~~al~l~P~~~~~  334 (347)
                      -+..+.+++..|.|++.+++|++|....+.||..++.++..+.++-.+-..+|.-.++... +.+....+|.++-+
T Consensus       203 ~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v  278 (299)
T KOG3081|consen  203 TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV  278 (299)
T ss_pred             cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence            3455677889999999999999999999999999999999999999999999988777655 45555556765543

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.50  E-value=0.024  Score=57.04  Aligned_cols=91  Identities=22%  Similarity=0.163  Sum_probs=79.2

Q ss_pred             ccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHH
Q 019054          222 HYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKAL  301 (347)
Q Consensus       222 ~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~  301 (347)
                      ....++|.+|+....+.++                  ..|....+..--|....++|++++|...++..-...+++...+
T Consensus        19 ~ld~~qfkkal~~~~kllk------------------k~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tL   80 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLK------------------KHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTL   80 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHH------------------HCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHH
Confidence            3467899999999999999                  7777777788889999999999999966555556677888888


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 019054          302 FRQGQAYMALNDVDAAVESFEKALKLEPN  330 (347)
Q Consensus       302 ~~~g~~~~~~~~~~~A~~~~~~al~l~P~  330 (347)
                      -.+-.+|..++++++|...|+++.+.+|+
T Consensus        81 q~l~~~y~d~~~~d~~~~~Ye~~~~~~P~  109 (932)
T KOG2053|consen   81 QFLQNVYRDLGKLDEAVHLYERANQKYPS  109 (932)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHhhCCc
Confidence            88999999999999999999999999998

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.40  E-value=0.0095  Score=56.03  Aligned_cols=96  Identities=18%  Similarity=0.112  Sum_probs=74.0

Q ss_pred             HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhh-hhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 019054          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKS-SSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (347)
Q Consensus       214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  292 (347)
                      .+.++|.++|+.+.|..++.+|.+||+..-...... ...... .-.......+++|.|..|+..|++-.|-+++.+++.
T Consensus       285 f~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g-~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~  363 (696)
T KOG2471|consen  285 FNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNG-LKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH  363 (696)
T ss_pred             eecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhcc-CCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH
Confidence            358899999999999999999999997322111110 111111 113334567899999999999999999999999999


Q ss_pred             cCCCChhHHHHHHHHHHh
Q 019054          293 DGDDNVKALFRQGQAYMA  310 (347)
Q Consensus       293 ~~p~~~~a~~~~g~~~~~  310 (347)
                      ..-.++..|.|+|.|-.+
T Consensus       364 vfh~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  364 VFHRNPRLWLRLAECCIM  381 (696)
T ss_pred             HHhcCcHHHHHHHHHHHH
Confidence            999999999999998665

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.35  E-value=0.023  Score=59.76  Aligned_cols=99  Identities=20%  Similarity=0.114  Sum_probs=77.9

Q ss_pred             HcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC
Q 019054          217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD  296 (347)
Q Consensus       217 ~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~  296 (347)
                      ..|..++..|++++|...++++++.....             .......++..+|.++...|++++|+..+.+++.....
T Consensus       457 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~-------------~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~  523 (903)
T PRK04841        457 LRAQVAINDGDPEEAERLAELALAELPLT-------------WYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQ  523 (903)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhcCCCc-------------cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence            35667778999999999999998732110             12223456788999999999999999999999976432


Q ss_pred             C------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 019054          297 N------VKALFRQGQAYMALNDVDAAVESFEKALKLE  328 (347)
Q Consensus       297 ~------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~  328 (347)
                      .      ..++..+|.++...|++++|...+++++.+.
T Consensus       524 ~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~  561 (903)
T PRK04841        524 HDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLI  561 (903)
T ss_pred             hcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            1      3567888999999999999999999998873

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.31  E-value=0.052  Score=46.53  Aligned_cols=111  Identities=18%  Similarity=0.134  Sum_probs=78.1

Q ss_pred             HHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHH-cCChHHHHHHHHHHh
Q 019054          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK-LGDLKGALLDTEFAM  291 (347)
Q Consensus       213 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-l~~~~~A~~~~~~al  291 (347)
                      ..+...++ .|++.+..+|+.+++++++++..+            ..-..-+.-+..+|..|-. +.++++||.+|++|-
T Consensus        75 t~YveA~~-cykk~~~~eAv~cL~~aieIyt~~------------Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aa  141 (288)
T KOG1586|consen   75 TTYVEAAN-CYKKVDPEEAVNCLEKAIEIYTDM------------GRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAA  141 (288)
T ss_pred             HHHHHHHH-HhhccChHHHHHHHHHHHHHHHhh------------hHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHH
Confidence            33344443 346668888999999998865322            0011222334567777765 489999999999997


Q ss_pred             hcCC------CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 019054          292 RDGD------DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKK  336 (347)
Q Consensus       292 ~~~p------~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~  336 (347)
                      +...      ..-+++...+..-..+++|.+|++.|++.....-++.-...
T Consensus       142 e~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKy  192 (288)
T KOG1586|consen  142 EYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKY  192 (288)
T ss_pred             HHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHh
Confidence            6543      23588999999999999999999999999887766665444

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.27  E-value=0.028  Score=59.10  Aligned_cols=103  Identities=17%  Similarity=0.079  Sum_probs=66.9

Q ss_pred             HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (347)
Q Consensus       214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  293 (347)
                      ....+|..+...|++++|...+++++.......            .......++.++|.++...|++++|...+++++.+
T Consensus       493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g------------~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~  560 (903)
T PRK04841        493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHD------------VYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQL  560 (903)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc------------chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            345667777889999999999999987543210            11112335567777777777777777777777654


Q ss_pred             CCC--------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 019054          294 GDD--------NVKALFRQGQAYMALNDVDAAVESFEKALKLE  328 (347)
Q Consensus       294 ~p~--------~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~  328 (347)
                      ...        ....+..+|.++...|++++|...+.+++.+.
T Consensus       561 ~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~  603 (903)
T PRK04841        561 IEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVL  603 (903)
T ss_pred             HHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence            211        12234456677777777777777777776653

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.24  E-value=0.0067  Score=53.83  Aligned_cols=79  Identities=16%  Similarity=0.088  Sum_probs=71.1

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .|......+....+.|+.++|...|+.|+.                  +.|.++.++..+|...-..++.-+|=.+|-+|
T Consensus       115 EA~~Al~~A~~~~~~Gk~ekA~~lfeHAla------------------laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~A  176 (472)
T KOG3824|consen  115 EAILALKAAGRSRKDGKLEKAMTLFEHALA------------------LAPTNPQILIEMGQFREMHNEIVEADQCYVKA  176 (472)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHh------------------cCCCCHHHHHHHhHHHHhhhhhHhhhhhhhee
Confidence            455556667778899999999999999999                  99999999999999998889999999999999


Q ss_pred             hhcCCCChhHHHHHHHH
Q 019054          291 MRDGDDNVKALFRQGQA  307 (347)
Q Consensus       291 l~~~p~~~~a~~~~g~~  307 (347)
                      |.++|.+.+|+-+++..
T Consensus       177 LtisP~nseALvnR~RT  193 (472)
T KOG3824|consen  177 LTISPGNSEALVNRART  193 (472)
T ss_pred             eeeCCCchHHHhhhhcc
Confidence            99999999999998754

>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3

Probab=96.23  E-value=0.019  Score=54.15  Aligned_cols=104  Identities=24%  Similarity=0.376  Sum_probs=69.9

Q ss_pred             eeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCCcccCCCCCCCcc
Q 019054           17 EGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENF   96 (347)
Q Consensus        17 ~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~   96 (347)
                      .-.+.+||.+. +|.++++|+.+.+.+.           +      +|-.         ..++-.+..+..|...+.||+
T Consensus       200 fTy~evE~~~~-~p~s~EH~la~~~~G~-----------~------~Vd~---------~tsTfi~d~~L~g~~~p~En~  252 (503)
T TIGR03268       200 FTYVEVELDPN-APVSVEHFLALMEDGT-----------F------RVDY---------RTSTFISDDSLRGLDKPEENI  252 (503)
T ss_pred             EEEEEEEEcCC-CChhHHHHHHHHhCCe-----------E------EEee---------eecceEecccccCccCCcccc
Confidence            34788898777 8999999999988762           1      1100         001111222334666777886


Q ss_pred             ccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhc
Q 019054           97 ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEH  152 (347)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~  152 (347)
                      .  .-++|+|.+.|.|..  ....||-..+-+ ..-.|+|+|+|+.||++++-...
T Consensus       253 ~--~R~rGtVTVRn~G~G--~G~VYIYredr~-ss~sHtvVG~V~~GiELid~a~~  303 (503)
T TIGR03268       253 E--KRRRGAVTVRNSGVG--EGRVYIYREDRP-SSLSHNVVGHVTRGIELIDIAQE  303 (503)
T ss_pred             C--cccceeEEEEeeccC--ceeEEEEcCCCC-CCcccceeEEEecceeeeecccC
Confidence            4  345799999999843  456888776644 22469999999999999875443

A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.21  E-value=0.14  Score=40.91  Aligned_cols=79  Identities=23%  Similarity=0.232  Sum_probs=59.5

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHhhcCCCC----------------------hhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 019054          268 TNSSACKLKLGDLKGALLDTEFAMRDGDDN----------------------VKALFRQGQAYMALNDVDAAVESFEKAL  325 (347)
Q Consensus       268 ~nla~~~~~l~~~~~A~~~~~~al~~~p~~----------------------~~a~~~~g~~~~~~~~~~~A~~~~~~al  325 (347)
                      ...|......++...++..+.+++.+....                      ..++..++..+...|++++|+..+++++
T Consensus        10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l   89 (146)
T PF03704_consen   10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRAL   89 (146)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            344555566788899999999998664221                      3467778888999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHhc
Q 019054          326 KLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       326 ~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      .++|.+..+...+-.+....+
T Consensus        90 ~~dP~~E~~~~~lm~~~~~~g  110 (146)
T PF03704_consen   90 ALDPYDEEAYRLLMRALAAQG  110 (146)
T ss_dssp             HHSTT-HHHHHHHHHHHHHTT
T ss_pred             hcCCCCHHHHHHHHHHHHHCc
Confidence            999999999988887766554

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.14  E-value=0.11  Score=44.86  Aligned_cols=111  Identities=14%  Similarity=0.082  Sum_probs=75.2

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  291 (347)
                      +..+..-++.+-..++|++|...+.+|++..+            +...--+-+.+|...+....++..+.++..++++|.
T Consensus        31 as~yekAAvafRnAk~feKakdcLlkA~~~yE------------nnrslfhAAKayEqaamLake~~klsEvvdl~eKAs   98 (308)
T KOG1585|consen   31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYE------------NNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKAS   98 (308)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH------------hcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            33444555566677899999999999986321            111222345667788888888999999999999998


Q ss_pred             hcC-----CCCh-hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 019054          292 RDG-----DDNV-KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIK  335 (347)
Q Consensus       292 ~~~-----p~~~-~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~  335 (347)
                      .+.     |+.+ -++-+-|.+ ....+.++|++.|++++.+--.+...+
T Consensus        99 ~lY~E~GspdtAAmaleKAak~-lenv~Pd~AlqlYqralavve~~dr~~  147 (308)
T KOG1585|consen   99 ELYVECGSPDTAAMALEKAAKA-LENVKPDDALQLYQRALAVVEEDDRDQ  147 (308)
T ss_pred             HHHHHhCCcchHHHHHHHHHHH-hhcCCHHHHHHHHHHHHHHHhccchHH
Confidence            764     3333 334444444 445789999999999988865544433

>PRK00969 hypothetical protein; Provisional

Probab=96.11  E-value=0.021  Score=54.09  Aligned_cols=104  Identities=26%  Similarity=0.400  Sum_probs=70.4

Q ss_pred             eeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCCcccCCCCCCCcc
Q 019054           17 EGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENF   96 (347)
Q Consensus        17 ~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~   96 (347)
                      .-.+.+||.++ +|.++++|+.+.+.+.           |      +|-         ...++-.+..+.-|...+.||+
T Consensus       203 fTy~eve~~~~-~p~s~EH~la~~~~G~-----------f------~Vd---------~~tstfI~d~~L~g~~~p~En~  255 (508)
T PRK00969        203 FTYVEVELDPG-APKSVEHFLALLEDGT-----------F------EVD---------FETSTFIADDRLQGLKIPEENF  255 (508)
T ss_pred             EEEEEEEEcCC-CCchHHHHHHHHhCCe-----------E------EEe---------eeecceEeeccccCccCCcccc
Confidence            34788899887 8999999999998762           1      110         0001111222334667777887


Q ss_pred             ccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhc
Q 019054           97 ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEH  152 (347)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~  152 (347)
                      ..  -++|+|.+.|.|.  .....||.-.+-+ -.-.|+|+|+|+.|+++++-...
T Consensus       256 ~~--R~~GtVTVRt~G~--g~G~vYIyredr~-ss~sHtvVG~V~~GiELi~~a~~  306 (508)
T PRK00969        256 EP--RRRGTVTVRTAGV--GVGKVYIYREDRP-SSLSHTVVGRVTHGIELIDFAKE  306 (508)
T ss_pred             Cc--cccceEEEEeecc--CceeEEEECCCCC-CCccceeEEEEecceeeeecccC
Confidence            43  4579999999984  3456888876644 22469999999999999875443

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.08  E-value=0.057  Score=47.17  Aligned_cols=114  Identities=14%  Similarity=0.257  Sum_probs=90.6

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .-...+.+.+.+.-.+.|.-.+..|.+.+++                 ..+..+.+...++.+.++.|+.+.|..+++.+
T Consensus       176 l~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-----------------~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~v  238 (366)
T KOG2796|consen  176 LGRVMYSMANCLLGMKEYVLSVDAYHSVIKY-----------------YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDV  238 (366)
T ss_pred             HHHHHHHHHHHHhcchhhhhhHHHHHHHHHh-----------------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            3445566778888899999999999999982                 34667778889999999999999999999944


Q ss_pred             h----hcCC--CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 019054          291 M----RDGD--DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (347)
Q Consensus       291 l----~~~p--~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~  341 (347)
                      -    .++.  .+.-.+.+.+.+|...++|.+|...|.+++..+|.++.+.+.-+.|
T Consensus       239 ek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALc  295 (366)
T KOG2796|consen  239 EKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALC  295 (366)
T ss_pred             HHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHH
Confidence            3    3333  2345667778888889999999999999999999988876655544

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.08  E-value=0.066  Score=50.45  Aligned_cols=102  Identities=12%  Similarity=0.101  Sum_probs=91.4

Q ss_pred             HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (347)
Q Consensus       214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  293 (347)
                      .+...|..--.++++..|...|++||.                  .+..+..+|...+.+-|+.++...|...+++|+.+
T Consensus        75 ~WikYaqwEesq~e~~RARSv~ERALd------------------vd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~  136 (677)
T KOG1915|consen   75 VWIKYAQWEESQKEIQRARSVFERALD------------------VDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI  136 (677)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHh------------------cccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh
Confidence            345556566678889999999999998                  77888999999999999999999999999999999


Q ss_pred             CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 019054          294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG  333 (347)
Q Consensus       294 ~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~  333 (347)
                      =|.--+.||..-..-..+|+..-|.+.|++=+++.|+...
T Consensus       137 lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqa  176 (677)
T KOG1915|consen  137 LPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQA  176 (677)
T ss_pred             cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHH
Confidence            9999999999999999999999999999999999996543

>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3

Probab=96.06  E-value=0.04  Score=52.13  Aligned_cols=113  Identities=19%  Similarity=0.309  Sum_probs=70.4

Q ss_pred             eEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCCcccCCCCCCCcccc
Q 019054           19 RIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFEL   98 (347)
Q Consensus        19 ~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~   98 (347)
                      =|.|+||.+.||.|+..|+++.--.. ..        -=-..+|=..++.++.=|+..          ++..+-+||..-
T Consensus       376 vi~IeLydd~AP~s~~yFRk~tGL~~-~~--------VG~L~v~F~~~d~~mFk~~~~----------~~k~LiPEN~P~  436 (503)
T TIGR03268       376 VIEIELYDDNAPRSVWYFRKFTGLKT-KP--------VGRLPVHFAFKEMIMFKGNKE----------LAKGLIPENTPE  436 (503)
T ss_pred             EEEEEEcccCCchHHHHHHHhcCCcc-cc--------cceeEEEEEeCCeeEeccCch----------hccccCCCCCCC
Confidence            57899999999999999999763321 00        011355666677555544332          233356777766


Q ss_pred             CCCCccEEEeeeCCCCCCCceEEEe------cCCCC-CCCCCCceeeEEEeChHHHHHHhc
Q 019054           99 KHERKGMLSMANAGPNTNGSQFFIT------TTRTS-HLDGKHVVFGRVIKGMGVVRSIEH  152 (347)
Q Consensus        99 ~~~~~g~~~~~~~~~~~~~sqF~i~------~~~~~-~l~~~~~vfG~v~~g~~vl~~I~~  152 (347)
                      ....+|.|+|.|......| -.=|-      ++|.. .+++ .-++|+|+++++.|+.+..
T Consensus       437 ~~V~ag~IgvTN~a~k~~G-~IGVRl~d~defGPTGE~F~g-TNIiG~Vv~~~e~Lk~~Ke  495 (503)
T TIGR03268       437 DKVEAGVIGVTNQACKHVG-MIGVRLEDSDEFGPTGEPFSG-TNIIGRVVEGMERLKGLKE  495 (503)
T ss_pred             CccccceEeeechhhhcCc-eEEEEccCCcccCCCCCCccC-cceEEEecCChhHhccccc
Confidence            6788999999887522111 01111      23332 3444 4567999999999877654

A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.06  E-value=0.027  Score=48.60  Aligned_cols=72  Identities=13%  Similarity=0.100  Sum_probs=65.4

Q ss_pred             HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (347)
Q Consensus       214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  293 (347)
                      .+.+....+...++|.+++++....|+                  ..|.+..+|+.+|.++...-+.++|..++.++|++
T Consensus       232 LllNy~QC~L~~~e~yevleh~seiL~------------------~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l  293 (329)
T KOG0545|consen  232 LLLNYCQCLLKKEEYYEVLEHCSEILR------------------HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL  293 (329)
T ss_pred             HHHhHHHHHhhHHHHHHHHHHHHHHHh------------------cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence            356788889999999999999999999                  89999999999999999999999999999999999


Q ss_pred             CCCChhHHHH
Q 019054          294 GDDNVKALFR  303 (347)
Q Consensus       294 ~p~~~~a~~~  303 (347)
                      +|.-..+-.+
T Consensus       294 dpslasvVsr  303 (329)
T KOG0545|consen  294 DPSLASVVSR  303 (329)
T ss_pred             ChhhHHHHHH
Confidence            9977665544

>PLN03077 Protein ECB2; Provisional

Probab=95.99  E-value=0.052  Score=56.87  Aligned_cols=62  Identities=6%  Similarity=-0.036  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 019054          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALK  326 (347)
Q Consensus       265 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~  326 (347)
                      ..|..+-.++...++.+.|....+++++++|+++..|..++.+|...|+|++|.+..+...+
T Consensus       658 ~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~  719 (857)
T PLN03077        658 AVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE  719 (857)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence            34444444455566666666666777777777777777777777777777777776665543

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.97  E-value=0.019  Score=51.65  Aligned_cols=95  Identities=11%  Similarity=-0.047  Sum_probs=67.3

Q ss_pred             HHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC
Q 019054          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (347)
Q Consensus       215 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~  294 (347)
                      ++-.-..+|-.|+-..-...+++.+...              ....|...-+.--+|.+....|-|++|....+++++++
T Consensus       140 ~kfsh~a~fy~G~~~~~k~ai~kIip~w--------------n~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN  205 (491)
T KOG2610|consen  140 VKFSHDAHFYNGNQIGKKNAIEKIIPKW--------------NADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQIN  205 (491)
T ss_pred             hhhhhhHHHhccchhhhhhHHHHhcccc--------------CCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCC
Confidence            3333344444555555555555555411              11233344455567888999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 019054          295 DDNVKALFRQGQAYMALNDVDAAVESFEK  323 (347)
Q Consensus       295 p~~~~a~~~~g~~~~~~~~~~~A~~~~~~  323 (347)
                      +.+..+....+.++.+.+++.++.+...+
T Consensus       206 ~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~  234 (491)
T KOG2610|consen  206 RFDCWASHAKAHVLEMNGRHKEGKEFMYK  234 (491)
T ss_pred             CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence            99999999999999999999998877554

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.95  E-value=0.32  Score=43.67  Aligned_cols=121  Identities=9%  Similarity=0.035  Sum_probs=85.7

Q ss_pred             hHHHHhhHHHHHHcCccccchh-hHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHH
Q 019054          205 LSWWMNAVDSIKVFGNEHYKKQ-DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGA  283 (347)
Q Consensus       205 ~~~~~~~a~~~~~~g~~~~~~g-~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A  283 (347)
                      +......+..+++.|..+++++ +|+.|+..+++|+++++.....    +............++..++.+|+..+.++..
T Consensus        28 ~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~----~~~~~~~~elr~~iL~~La~~~l~~~~~~~~  103 (278)
T PF08631_consen   28 PDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKM----DKLSPDGSELRLSILRLLANAYLEWDTYESV  103 (278)
T ss_pred             cHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhc----cccCCcHHHHHHHHHHHHHHHHHcCCChHHH
Confidence            3344557889999999999999 9999999999999987542111    1112235567888999999999998886543


Q ss_pred             HH---HHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 019054          284 LL---DTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP  329 (347)
Q Consensus       284 ~~---~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P  329 (347)
                      ..   ..+.+-.-.|+.+..++..=.+....++.+++.+.+.+++.--+
T Consensus       104 ~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen  104 EKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD  152 (278)
T ss_pred             HHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence            33   33333344566666665555555557888888888888887654

It is also involved in sporulation [].

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=95.91  E-value=0.032  Score=42.14  Aligned_cols=96  Identities=14%  Similarity=0.118  Sum_probs=68.2

Q ss_pred             cCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHc----CC-------hHHHHHH
Q 019054          218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL----GD-------LKGALLD  286 (347)
Q Consensus       218 ~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l----~~-------~~~A~~~  286 (347)
                      .+..+|.+|++-+|++..+..+..-..               +.....++..-|.++.++    .+       .-.+++.
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~---------------~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~   66 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGE---------------DESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVEC   66 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccC---------------CCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHH
Confidence            355678899999999999999872210               000012233334444332    22       4467899


Q ss_pred             HHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 019054          287 TEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE  328 (347)
Q Consensus       287 ~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~  328 (347)
                      +.++..+.|..+..+|.+|.-+-....|++++.-.++++...
T Consensus        67 ~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~  108 (111)
T PF04781_consen   67 FSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSVT  108 (111)
T ss_pred             HHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence            999999999999999999998888888999998888888653

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=95.84  E-value=0.28  Score=46.62  Aligned_cols=93  Identities=14%  Similarity=0.095  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHH
Q 019054          228 YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQA  307 (347)
Q Consensus       228 y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~  307 (347)
                      ...-+..|+.|+.                  --+.+..+|.+......+.+.+.+.-..|.++|..+|+++..|..-|.-
T Consensus        87 ~~rIv~lyr~at~------------------rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~w  148 (568)
T KOG2396|consen   87 PNRIVFLYRRATN------------------RFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKW  148 (568)
T ss_pred             HHHHHHHHHHHHH------------------hcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhh
Confidence            3444566888877                  3344667788887777777779999999999999999999999998887


Q ss_pred             HHhcCC-HHHHHHHHHHHHhhCCCCHHHHHHH
Q 019054          308 YMALND-VDAAVESFEKALKLEPNDGGIKKEL  338 (347)
Q Consensus       308 ~~~~~~-~~~A~~~~~~al~l~P~~~~~~~~l  338 (347)
                      .+..+. .+.|.+.|.++++.+|+++.++.+.
T Consensus       149 efe~n~ni~saRalflrgLR~npdsp~Lw~ey  180 (568)
T KOG2396|consen  149 EFEINLNIESARALFLRGLRFNPDSPKLWKEY  180 (568)
T ss_pred             HHhhccchHHHHHHHHHHhhcCCCChHHHHHH
Confidence            777765 9999999999999999999987654

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.77  E-value=0.019  Score=34.84  Aligned_cols=29  Identities=21%  Similarity=0.061  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054          265 QIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (347)
Q Consensus       265 ~~~~nla~~~~~l~~~~~A~~~~~~al~~  293 (347)
                      .++.|+|.+|..+|++++|+.++++++.+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            45677777777777777777777777754

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.71  E-value=0.049  Score=51.66  Aligned_cols=110  Identities=14%  Similarity=0.082  Sum_probs=78.8

Q ss_pred             HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (347)
Q Consensus       214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  293 (347)
                      .-+.+|+.+.+.|+.++|++.|+..++..+                ......+..|+-.|++.++.|.++...+.+-=.+
T Consensus       261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p----------------~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi  324 (539)
T PF04184_consen  261 AKRRLAMCARKLGRLREAIKMFRDLLKEFP----------------NLDNLNIRENLIEALLELQAYADVQALLAKYDDI  324 (539)
T ss_pred             hHHHHHHHHHHhCChHHHHHHHHHHHhhCC----------------ccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence            346688888899999999999999988211                1135568999999999999999998887775433


Q ss_pred             C-CCChhHHHHHHHHHHh-cCC---------------HHHHHHHHHHHHhhCCCCHHHHHHHH
Q 019054          294 G-DDNVKALFRQGQAYMA-LND---------------VDAAVESFEKALKLEPNDGGIKKELA  339 (347)
Q Consensus       294 ~-p~~~~a~~~~g~~~~~-~~~---------------~~~A~~~~~~al~l~P~~~~~~~~l~  339 (347)
                      . |.++-..|..|....+ .++               -..|++.+.+|.+.||+-+...-+++
T Consensus       325 ~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K  387 (539)
T PF04184_consen  325 SLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMK  387 (539)
T ss_pred             cCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccC
Confidence            2 4555555555543322 111               23477889999999999887766544

The molecular function of this protein is uncertain.

>PLN03218 maturation of RBCL 1; Provisional

Probab=95.66  E-value=0.15  Score=54.16  Aligned_cols=29  Identities=3%  Similarity=-0.150  Sum_probs=16.8

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHH
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALR  240 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~  240 (347)
                      ...+..+-..+.+.|++++|.+.|.+...
T Consensus       542 ~vTYnsLI~a~~k~G~~deA~~lf~eM~~  570 (1060)
T PLN03218        542 RVVFNALISACGQSGAVDRAFDVLAEMKA  570 (1060)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            34455555556666666666666665543

>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=95.62  E-value=0.036  Score=50.56  Aligned_cols=107  Identities=25%  Similarity=0.417  Sum_probs=70.4

Q ss_pred             CeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCCcccCCCCCC
Q 019054           14 VELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFED   93 (347)
Q Consensus        14 ~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~   93 (347)
                      ..-.-.+.+||.+. +|+++++|++|.+.+.           +      ||-         +..++=.+..+..+.+.+.
T Consensus       199 drifTy~eve~s~n-sP~saEH~lalmedG~-----------l------ri~---------~~tntfis~~~lq~~~~~~  251 (512)
T COG4070         199 DRIFTYFEVELSRN-SPKSAEHFLALMEDGT-----------L------RID---------VTTNTFISDDTLQEEKVPE  251 (512)
T ss_pred             CEEEEEEEEEeCCC-CchhHHHHHHHhhcce-----------E------EEE---------EeccceeeccccccccCCh
Confidence            34456788999887 7999999999987762           1      221         0111111222334667788


Q ss_pred             CccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhc
Q 019054           94 ENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEH  152 (347)
Q Consensus        94 e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~  152 (347)
                      ||+.++  .+|.++..|.|-.  ...-||.-.+-+. .-.|.|+|+|++||++++-...
T Consensus       252 en~d~R--erG~iTvRn~Gvg--eGrvYIyRedR~s-s~sHnvVGrV~eGiELid~a~e  305 (512)
T COG4070         252 ENFDLR--ERGAITVRNVGVG--EGRVYIYREDRPS-SLSHNVVGRVIEGIELIDLAEE  305 (512)
T ss_pred             hhhhhh--hcceEEEEeeecc--cceEEEEecCCCC-ccccceeeeeecceEEEEeccc
Confidence            888764  4699999998843  4567776554321 2358999999999998875443

>PLN03218 maturation of RBCL 1; Provisional

Probab=95.61  E-value=0.16  Score=54.01  Aligned_cols=26  Identities=8%  Similarity=0.015  Sum_probs=15.5

Q ss_pred             HHHHcCccccchhhHHHHHHHHHHHH
Q 019054          214 SIKVFGNEHYKKQDYKMALRKYRKAL  239 (347)
Q Consensus       214 ~~~~~g~~~~~~g~y~~A~~~y~~al  239 (347)
                      .+..+-..+.+.|++++|++.|.+..
T Consensus       509 TynaLI~gy~k~G~~eeAl~lf~~M~  534 (1060)
T PLN03218        509 TFGALIDGCARAGQVAKAFGAYGIMR  534 (1060)
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            34444455666677777776666554

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.59  E-value=0.025  Score=33.97  Aligned_cols=29  Identities=24%  Similarity=0.407  Sum_probs=25.0

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019054          299 KALFRQGQAYMALNDVDAAVESFEKALKL  327 (347)
Q Consensus       299 ~a~~~~g~~~~~~~~~~~A~~~~~~al~l  327 (347)
                      .+|.++|.+....++|++|+.+|++|+++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            56788888988999999999999998876

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=95.58  E-value=0.054  Score=38.12  Aligned_cols=68  Identities=18%  Similarity=0.217  Sum_probs=53.8

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+....+.|.-+|...+.++|+..++++++...               ..+....++--+..+|...|+|.+++.+.-.-
T Consensus         5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~---------------~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q   69 (80)
T PF10579_consen    5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKIT---------------DREDRFRVLGYLIQAHMEWGKYREMLAFALQQ   69 (80)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcC---------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677888889999999999999999998432               23456667777888899999999999887665


Q ss_pred             hhc
Q 019054          291 MRD  293 (347)
Q Consensus       291 l~~  293 (347)
                      +.+
T Consensus        70 ~~~   72 (80)
T PF10579_consen   70 LEI   72 (80)
T ss_pred             HHH
Confidence            543

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.55  E-value=0.021  Score=48.71  Aligned_cols=60  Identities=17%  Similarity=0.111  Sum_probs=56.0

Q ss_pred             ccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC
Q 019054          220 NEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN  297 (347)
Q Consensus       220 ~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~  297 (347)
                      ..+.+.++.+.|.+.|.+++.                  +.|....-|+.+|....+.|+++.|...|++.++++|.+
T Consensus         3 ~~~~~~~D~~aaaely~qal~------------------lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALE------------------LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             chhcccCChHHHHHHHHHHhh------------------cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            345678999999999999999                  889999999999999999999999999999999999976

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=95.53  E-value=0.51  Score=38.29  Aligned_cols=109  Identities=13%  Similarity=-0.036  Sum_probs=78.6

Q ss_pred             HHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 019054          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (347)
Q Consensus       213 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  292 (347)
                      ..+..........++.+++...+.-.--                  +.|....+-.--|..++..|+|.+|+..++.+.+
T Consensus        11 ~gLie~~~~al~~~~~~D~e~lL~ALrv------------------LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~   72 (160)
T PF09613_consen   11 GGLIEVLSVALRLGDPDDAEALLDALRV------------------LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE   72 (160)
T ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHH------------------hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence            3455555555666677777777654444                  7888888889999999999999999999999988


Q ss_pred             cCCCChhHHHHHHHHHHhcCCHHHHHHHH-HHHHhhCCCCHHHHHHHHHHH
Q 019054          293 DGDDNVKALFRQGQAYMALNDVDAAVESF-EKALKLEPNDGGIKKELAVAK  342 (347)
Q Consensus       293 ~~p~~~~a~~~~g~~~~~~~~~~~A~~~~-~~al~l~P~~~~~~~~l~~~~  342 (347)
                      -.|..+-+--.++.|+..+++.+  .+.+ +.+++-. .++.....++.+.
T Consensus        73 ~~~~~p~~kALlA~CL~~~~D~~--Wr~~A~evle~~-~d~~a~~Lv~~Ll  120 (160)
T PF09613_consen   73 RAPGFPYAKALLALCLYALGDPS--WRRYADEVLESG-ADPDARALVRALL  120 (160)
T ss_pred             cCCCChHHHHHHHHHHHHcCChH--HHHHHHHHHhcC-CChHHHHHHHHHH
Confidence            88888877778888999988863  2222 2344443 3666555555444

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.51  E-value=0.16  Score=45.90  Aligned_cols=113  Identities=13%  Similarity=-0.035  Sum_probs=88.8

Q ss_pred             HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (347)
Q Consensus       214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  293 (347)
                      .....+..++-+|++.+|...+.+.|+                  .-|....++...-.+++.+|+...-...+++++..
T Consensus       105 k~h~~aai~~~~g~~h~a~~~wdklL~------------------d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~  166 (491)
T KOG2610|consen  105 KRHAKAAILWGRGKHHEAAIEWDKLLD------------------DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK  166 (491)
T ss_pred             hhhhhHHHhhccccccHHHHHHHHHHH------------------hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc
Confidence            344556677888999999999999998                  66777777777778888999999999999999977


Q ss_pred             -CCCCh---hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054          294 -GDDNV---KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (347)
Q Consensus       294 -~p~~~---~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  344 (347)
                       +++-+   -.+--.+..+...|-|++|.+.-+++++++|.|.=+.-.++.+.+.
T Consensus       167 wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem  221 (491)
T KOG2610|consen  167 WNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEM  221 (491)
T ss_pred             cCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHh
Confidence             66553   3333456678889999999999999999999887666655555443

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=95.49  E-value=0.41  Score=42.68  Aligned_cols=70  Identities=16%  Similarity=0.165  Sum_probs=65.6

Q ss_pred             hHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019054          258 SLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL  327 (347)
Q Consensus       258 ~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l  327 (347)
                      .+......++..++..+...++++.++...++.+..+|-+.++|.++-.+|+..|+...|+..|++.-++
T Consensus       147 ~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         147 ALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            3667788899999999999999999999999999999999999999999999999999999999988774

>PRK00969 hypothetical protein; Provisional

Probab=95.48  E-value=0.099  Score=49.70  Aligned_cols=112  Identities=19%  Similarity=0.289  Sum_probs=70.6

Q ss_pred             eEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCCcccCCCCCCCcccc
Q 019054           19 RIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFEL   98 (347)
Q Consensus        19 ~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~   98 (347)
                      =|.|+||.+.||+|+..|+.+.--....         -=-..+|=..++.++.=|+..          ++..+-+||..-
T Consensus       379 vi~IeLydd~AP~s~~yFR~~tGL~~~~---------VG~L~v~F~~~d~~lFk~~~~----------~~k~liPEN~P~  439 (508)
T PRK00969        379 LIEIELYDDKAPRTVWYFRKVTGLKTKP---------VGKLPVYFKYEDTYLFKGNIE----------YAKGLLPENTPE  439 (508)
T ss_pred             EEEEEEcCcCCchHHHHHHHhcCCcccc---------cceeEEEEEeCCeEEEccChh----------hccccCCCCCCC
Confidence            5789999999999999999986432100         011356666777666544432          233466787777


Q ss_pred             CCCCccEEEeeeCCCCCCCceEEEe------cCCCC-CCCCCCceeeEEEeChHHHHHHhc
Q 019054           99 KHERKGMLSMANAGPNTNGSQFFIT------TTRTS-HLDGKHVVFGRVIKGMGVVRSIEH  152 (347)
Q Consensus        99 ~~~~~g~~~~~~~~~~~~~sqF~i~------~~~~~-~l~~~~~vfG~v~~g~~vl~~I~~  152 (347)
                      ...++|.|+|.|......| -.=|-      ++|.. .+++ .-++|+|+ +++.|+.+..
T Consensus       440 ~~V~ag~IgvTN~a~k~~G-~iGVR~~d~d~fGPTGE~F~g-TNIIGrVv-~~e~Lk~lKe  497 (508)
T PRK00969        440 DKVKAGEIGVTNMAAKYKG-MIGVRLSDNDEFGPTGEPFEG-TNIIGRVV-NLEKLKKLKE  497 (508)
T ss_pred             CccccceEeeechhhhcCc-eEEEEccCCcccCCCCCCccC-ceeEEEec-ChHHhccccc
Confidence            7788999999887522111 01111      23332 2444 56899999 9988877655

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=95.46  E-value=0.15  Score=47.67  Aligned_cols=104  Identities=21%  Similarity=0.065  Sum_probs=78.5

Q ss_pred             chhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh---------hc-
Q 019054          224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM---------RD-  293 (347)
Q Consensus       224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al---------~~-  293 (347)
                      ....|.++...|..++....-      ..--.-....|-.+..+..++.++..+|+++.|.+.+++||         .. 
T Consensus         6 hs~~Y~~~q~~F~~~v~~~Dp------~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~   79 (360)
T PF04910_consen    6 HSKAYQEAQEQFYAAVQSHDP------NALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFS   79 (360)
T ss_pred             CCHHHHHHHHHHHHHHHccCH------HHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            345677788888777763210      00000113567788899999999999999999999999997         11 


Q ss_pred             ----CCC------------C---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-CHH
Q 019054          294 ----GDD------------N---VKALFRQGQAYMALNDVDAAVESFEKALKLEPN-DGG  333 (347)
Q Consensus       294 ----~p~------------~---~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~-~~~  333 (347)
                          ++.            |   ..++++....+.+.|.+.-|++..+-.+.++|. |+-
T Consensus        80 ~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~  139 (360)
T PF04910_consen   80 PFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPL  139 (360)
T ss_pred             hhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcc
Confidence                211            1   468999999999999999999999999999998 664

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PRK10941 hypothetical protein; Provisional

Probab=95.44  E-value=0.065  Score=47.72  Aligned_cols=78  Identities=12%  Similarity=0.109  Sum_probs=67.6

Q ss_pred             HHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 019054          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (347)
Q Consensus       213 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  292 (347)
                      +-+.++=..+.+.++|+.|+..-+..+.                  +.|..+.-+.-+|.+|.+++.+..|+.+++..++
T Consensus       182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~------------------l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~  243 (269)
T PRK10941        182 KLLDTLKAALMEEKQMELALRASEALLQ------------------FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE  243 (269)
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            3345555678899999999999999999                  8999999999999999999999999999999999


Q ss_pred             cCCCChhHHHHHHHHH
Q 019054          293 DGDDNVKALFRQGQAY  308 (347)
Q Consensus       293 ~~p~~~~a~~~~g~~~  308 (347)
                      ..|+++.+-.-+.++.
T Consensus       244 ~~P~dp~a~~ik~ql~  259 (269)
T PRK10941        244 QCPEDPISEMIRAQIH  259 (269)
T ss_pred             hCCCchhHHHHHHHHH
Confidence            9999987766555443

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=95.39  E-value=0.097  Score=53.53  Aligned_cols=128  Identities=13%  Similarity=-0.034  Sum_probs=79.3

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhh------------hccccCCCChhhh--hhHH-----hhHHHHHHHHHH
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLD------------ICWEKEGIDEGKS--SSLR-----KTKSQIFTNSSA  272 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~------------~~~~~~~~~~~~~--~~~~-----~~~~~~~~nla~  272 (347)
                      ...+..+...|.+.|+.++|++.|++.++.=-            .+......+....  ..+.     ......|..+..
T Consensus       391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~  470 (697)
T PLN03081        391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE  470 (697)
T ss_pred             eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence            45577777788888888888888887654100            0000000000000  0000     011235667778


Q ss_pred             HHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 019054          273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (347)
Q Consensus       273 ~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~  341 (347)
                      ++.+.|++++|.+.+++.- ..| +...|..+..++...|+++.|...+++.+++.|++......|..+
T Consensus       471 ~l~r~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~  537 (697)
T PLN03081        471 LLGREGLLDEAYAMIRRAP-FKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNL  537 (697)
T ss_pred             HHHhcCCHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHH
Confidence            8888888888888776542 233 455677788888888899999988888889888876554444444

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=95.26  E-value=0.25  Score=46.74  Aligned_cols=99  Identities=14%  Similarity=0.171  Sum_probs=76.7

Q ss_pred             chhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHH
Q 019054          224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFR  303 (347)
Q Consensus       224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~  303 (347)
                      +.++++.....|++.|.                  ..|.+..+|...|..-..+|+.+.|...|+-|+....-+..-+..
T Consensus       449 qL~efDRcRkLYEkfle------------------~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellw  510 (677)
T KOG1915|consen  449 QLREFDRCRKLYEKFLE------------------FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLW  510 (677)
T ss_pred             HHhhHHHHHHHHHHHHh------------------cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence            46678888888888888                  889999999999999999999999999999999776555444444


Q ss_pred             HHHHH--HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 019054          304 QGQAY--MALNDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (347)
Q Consensus       304 ~g~~~--~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~  341 (347)
                      .+.+-  ...|+++.|...|++.|+..+..+ ++-..+..
T Consensus       511 kaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~f  549 (677)
T KOG1915|consen  511 KAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKF  549 (677)
T ss_pred             HHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHH
Confidence            44443  346889999999999999987666 55444443

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=95.25  E-value=0.35  Score=39.25  Aligned_cols=86  Identities=15%  Similarity=0.005  Sum_probs=76.3

Q ss_pred             hhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 019054          261 KTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAV  340 (347)
Q Consensus       261 ~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~  340 (347)
                      ......+..+..+-.+.++.+++...+...--+.|..+..-..-|..+...|+|.+|+..++...+-.|..+..+..++.
T Consensus         7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~   86 (160)
T PF09613_consen    7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLAL   86 (160)
T ss_pred             HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence            34456677788888899999999999998889999999999999999999999999999999999999999999998888


Q ss_pred             HHHHhc
Q 019054          341 AKKKVS  346 (347)
Q Consensus       341 ~~~~~~  346 (347)
                      |...++
T Consensus        87 CL~~~~   92 (160)
T PF09613_consen   87 CLYALG   92 (160)
T ss_pred             HHHHcC
Confidence            876543

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.23  E-value=0.15  Score=49.44  Aligned_cols=78  Identities=17%  Similarity=0.082  Sum_probs=65.2

Q ss_pred             HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q 019054          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN----VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI  334 (347)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~----~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~  334 (347)
                      .-|...-.++..|.++...|+.++|++.+++++......    .-+++.+|.++..+.+|++|..+|.+..+.+.-.+..
T Consensus       262 ~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~  341 (468)
T PF10300_consen  262 RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAF  341 (468)
T ss_pred             hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHH
Confidence            667788889999999999999999999999999544332    4578999999999999999999999999987654444


Q ss_pred             HH
Q 019054          335 KK  336 (347)
Q Consensus       335 ~~  336 (347)
                      ..
T Consensus       342 Y~  343 (468)
T PF10300_consen  342 YA  343 (468)
T ss_pred             HH
Confidence            33

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=95.13  E-value=0.34  Score=43.59  Aligned_cols=104  Identities=16%  Similarity=0.143  Sum_probs=77.7

Q ss_pred             HHcCccccc-hhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC
Q 019054          216 KVFGNEHYK-KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (347)
Q Consensus       216 ~~~g~~~~~-~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~  294 (347)
                      ...|..-+. .++.+.|...|+.+++                  .-+....+|......+.++++.+.|...+++++..-
T Consensus        39 ~~~A~~E~~~~~d~~~A~~Ife~glk------------------~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l  100 (280)
T PF05843_consen   39 VAYALMEYYCNKDPKRARKIFERGLK------------------KFPSDPDFWLEYLDFLIKLNDINNARALFERAISSL  100 (280)
T ss_dssp             HHHHHHHHHTCS-HHHHHHHHHHHHH------------------HHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTS
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc
Confidence            334444333 5777779999999999                  667777888888889999999999999999999876


Q ss_pred             CCCh---hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 019054          295 DDNV---KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKE  337 (347)
Q Consensus       295 p~~~---~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~  337 (347)
                      |...   ..|-+...--...|+.+......+++.++.|.+..+...
T Consensus       101 ~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f  146 (280)
T PF05843_consen  101 PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELF  146 (280)
T ss_dssp             SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHH
T ss_pred             CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHH
Confidence            5543   455556666667799999999999999999987665543

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.08  E-value=0.055  Score=32.74  Aligned_cols=31  Identities=32%  Similarity=0.407  Sum_probs=26.8

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 019054          298 VKALFRQGQAYMALNDVDAAVESFEKALKLE  328 (347)
Q Consensus       298 ~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~  328 (347)
                      +.++.++|.+|..+|++++|+..+++++++.
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence            3578899999999999999999999998863

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=95.01  E-value=0.082  Score=39.01  Aligned_cols=64  Identities=20%  Similarity=0.214  Sum_probs=47.0

Q ss_pred             cchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC
Q 019054          223 YKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD  295 (347)
Q Consensus       223 ~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p  295 (347)
                      .+.++|.+|++.+.+...+.......         ........++.++|.++...|++++|+..+++|+++..
T Consensus         9 ~~~~dy~~A~d~L~~~fD~~~~~~~~---------~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen    9 LRSGDYSEALDALHRYFDYAKQSNNS---------SSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhcccc---------hhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            46789999999999988854322100         01223456788899999999999999999999987643

>PLN03077 Protein ECB2; Provisional

Probab=94.99  E-value=0.21  Score=52.37  Aligned_cols=131  Identities=14%  Similarity=0.036  Sum_probs=77.7

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHh--h----------hccccCCCChhh--hhhHH-----hhHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYL--D----------ICWEKEGIDEGK--SSSLR-----KTKSQIFTNSS  271 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~--~----------~~~~~~~~~~~~--~~~~~-----~~~~~~~~nla  271 (347)
                      ....+..+...+.+.|+.++|++.|++..+.=  +          .+......++..  ...+.     ......|..+.
T Consensus       553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv  632 (857)
T PLN03077        553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVV  632 (857)
T ss_pred             ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence            34567777778888888888888888766510  0          000000000000  00010     11224567777


Q ss_pred             HHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 019054          272 ACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK  343 (347)
Q Consensus       272 ~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  343 (347)
                      .++.+.|++++|.+.+++. .+.|+ +..|..+-.++..-++.+.|....+++++++|++......|..+..
T Consensus       633 ~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya  702 (857)
T PLN03077        633 DLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYA  702 (857)
T ss_pred             HHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Confidence            7777778888887777664 34443 4455555556666777777777778888888887777666655543

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=94.82  E-value=0.36  Score=35.27  Aligned_cols=55  Identities=18%  Similarity=0.027  Sum_probs=41.0

Q ss_pred             HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC--hhHHHHHHHHHHhcCC
Q 019054          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN--VKALFRQGQAYMALND  313 (347)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~--~~a~~~~g~~~~~~~~  313 (347)
                      .+|.+..+.+.+|..++..|++++|++.+-.+++.++++  ..+--.+=.++..+|.
T Consensus        17 ~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~   73 (90)
T PF14561_consen   17 ANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP   73 (90)
T ss_dssp             HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred             cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence            889999999999999999999999999999999998876  3444444444444444

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=94.77  E-value=0.2  Score=44.51  Aligned_cols=70  Identities=13%  Similarity=0.082  Sum_probs=62.2

Q ss_pred             hhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 019054          257 SSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALK  326 (347)
Q Consensus       257 ~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~  326 (347)
                      +.+.......+...|..|.+.|.+.+|+..+++++.++|-+...+.-+-.++..+|+--+|+..|++.-+
T Consensus       272 erle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~  341 (361)
T COG3947         272 ERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE  341 (361)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence            4466677778888899999999999999999999999999999999999999999998888888877644

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=94.70  E-value=0.22  Score=38.12  Aligned_cols=73  Identities=18%  Similarity=0.075  Sum_probs=55.6

Q ss_pred             HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (347)
Q Consensus       214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  293 (347)
                      -+--++..+...|+|++++..-.++|.|++....+.       ..-....+.+.+++|.++-.+|+.++|+..++.+.++
T Consensus        57 chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~-------qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   57 CHAGLSGALAGLGRYDECLQSADRALRYFNRRGELH-------QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TT-------STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-------cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            344456667788999999999999999998653332       1244567788999999999999999999999998754

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=94.59  E-value=0.33  Score=44.80  Aligned_cols=116  Identities=18%  Similarity=0.127  Sum_probs=80.4

Q ss_pred             HHHcCccccchhhHHHHHHHHHHHHH-Hhhhcccc--------------CCCC-hhhhhhHHhhHHHHHHHHHHHHHHc-
Q 019054          215 IKVFGNEHYKKQDYKMALRKYRKALR-YLDICWEK--------------EGID-EGKSSSLRKTKSQIFTNSSACKLKL-  277 (347)
Q Consensus       215 ~~~~g~~~~~~g~y~~A~~~y~~al~-~~~~~~~~--------------~~~~-~~~~~~~~~~~~~~~~nla~~~~~l-  277 (347)
                      ....+..+...|+-.+|+......+. .+......              .... ...........+.++..+|.-...+ 
T Consensus       187 ~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~  266 (352)
T PF02259_consen  187 FLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELY  266 (352)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhc
Confidence            34445555666677788887777776 22211000              0000 0012234556678888899988888 


Q ss_pred             -----CChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCH-----------------HHHHHHHHHHHhhCCC
Q 019054          278 -----GDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDV-----------------DAAVESFEKALKLEPN  330 (347)
Q Consensus       278 -----~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~-----------------~~A~~~~~~al~l~P~  330 (347)
                           +..++++..|.+|+.++|...++|+..|..+..+-+.                 ..|+..|-+|+.+.+.
T Consensus       267 ~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  267 SKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             cccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence                 8999999999999999999999999999887765322                 3488999999999886

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=94.47  E-value=0.17  Score=46.37  Aligned_cols=114  Identities=17%  Similarity=0.196  Sum_probs=67.9

Q ss_pred             eEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCc--eEEeccCCCCCCCCCCcccCCCCCCCcc
Q 019054           19 RIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGF--MIQGGDISAGDGTGGESIYGLKFEDENF   96 (347)
Q Consensus        19 ~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~--~iq~G~~~~~~~~~~~~~~~~~~~~e~~   96 (347)
                      =|+||||.+.||.++..|+.+..-. ..+        --....|=..++.  +..-|+..          ++....+||.
T Consensus       377 iieIELyed~APrSv~yFRr~t~l~-~kp--------VGkL~Vhfay~d~~~vmfegn~~----------~~K~llPEN~  437 (512)
T COG4070         377 IIEIELYEDRAPRSVWYFRRSTGLK-TKP--------VGKLKVHFAYDDTYLVMFEGNAV----------LAKGLLPENT  437 (512)
T ss_pred             EEEEEecCCCCchhhHHHHhhcccc-ccc--------ccceEEEEEeCCceEEEEcCChH----------HhccCCCCCC
Confidence            4789999999999999999986432 111        1123566666763  22333322          3444566777


Q ss_pred             ccCCCCccEEEeeeCCCCCCCceEEEec------CCCCCCCCCCceeeEEEeChHHHHHHhc
Q 019054           97 ELKHERKGMLSMANAGPNTNGSQFFITT------TRTSHLDGKHVVFGRVIKGMGVVRSIEH  152 (347)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~~~sqF~i~~------~~~~~l~~~~~vfG~v~~g~~vl~~I~~  152 (347)
                      ......+|.+++.|....-.|. .=+-|      +|...-=...-++|++++|.+-+..|..
T Consensus       438 P~d~Ve~g~iGvTN~a~r~~Gm-IGVRL~dsdefGPTGE~Fe~TNiIGrIveg~e~l~~ike  498 (512)
T COG4070         438 PADTVEAGEIGVTNQAARHMGM-IGVRLEDSDEFGPTGEKFEGTNIIGRIVEGPERLIGIKE  498 (512)
T ss_pred             chhheecccccccccchhccce-eEEEeccccccCCCCCccccceeehhhccChHHhccccc
Confidence            6666677777766554211111 11112      2322222346689999999999888766

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.21  E-value=0.32  Score=42.19  Aligned_cols=96  Identities=14%  Similarity=0.059  Sum_probs=52.7

Q ss_pred             HHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC
Q 019054          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (347)
Q Consensus       215 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~  294 (347)
                      +-..|..+-+...+.++..+|++|..+..+.             -.|.-+..-...|.=..+..++++|+..|++++.+-
T Consensus        74 yEqaamLake~~klsEvvdl~eKAs~lY~E~-------------GspdtAAmaleKAak~lenv~Pd~AlqlYqralavv  140 (308)
T KOG1585|consen   74 YEQAAMLAKELSKLSEVVDLYEKASELYVEC-------------GSPDTAAMALEKAAKALENVKPDDALQLYQRALAVV  140 (308)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-------------CCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence            3334444445556666666666666644332             222333333444555556677778888887776543


Q ss_pred             CCC------hhHHHHHHHHHHhcCCHHHHHHHHHH
Q 019054          295 DDN------VKALFRQGQAYMALNDVDAAVESFEK  323 (347)
Q Consensus       295 p~~------~~a~~~~g~~~~~~~~~~~A~~~~~~  323 (347)
                      ...      ...+-..+.++..+.+|++|...+.+
T Consensus       141 e~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lK  175 (308)
T KOG1585|consen  141 EEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLK  175 (308)
T ss_pred             hccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence            221      23344455666667777776655544

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=94.10  E-value=1.2  Score=39.99  Aligned_cols=104  Identities=16%  Similarity=0.146  Sum_probs=76.0

Q ss_pred             ccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcC-ChHHHHHHHHHHhhc----CC-
Q 019054          222 HYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-DLKGALLDTEFAMRD----GD-  295 (347)
Q Consensus       222 ~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-~~~~A~~~~~~al~~----~p-  295 (347)
                      ..++|+++.|..+|.|+-.+....          ...........++|.|....+.+ +++.|+.++++|+++    .+ 
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~----------~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~   72 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSL----------DPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKM   72 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcC----------CcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhc
Confidence            457899999999999997744211          11244566788999999999999 999999999999877    22 


Q ss_pred             --CC-------hhHHHHHHHHHHhcCCHHH---HHHHHHHHHhhCCCCHHHH
Q 019054          296 --DN-------VKALFRQGQAYMALNDVDA---AVESFEKALKLEPNDGGIK  335 (347)
Q Consensus       296 --~~-------~~a~~~~g~~~~~~~~~~~---A~~~~~~al~l~P~~~~~~  335 (347)
                        ..       ...+..++.+|...+.++.   |...++.+..-.|+.+.+.
T Consensus        73 ~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~  124 (278)
T PF08631_consen   73 DKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF  124 (278)
T ss_pred             cccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence              11       4678889999999887664   4444445555567766655

It is also involved in sporulation [].

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=94.08  E-value=0.3  Score=37.52  Aligned_cols=116  Identities=17%  Similarity=0.132  Sum_probs=79.7

Q ss_pred             HHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH----
Q 019054          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA----  290 (347)
Q Consensus       215 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a----  290 (347)
                      +..+|+..++.+++-.|+-+|++|+......+.....+.++   +--..+.-..|+|..+..+|+.+-.+.+++-|    
T Consensus         4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~d---ll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~V   80 (140)
T PF10952_consen    4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELED---LLTISVISCHNLADFWRSQGDSDYELKYLQLASEKV   80 (140)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHH---HHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHH
Confidence            45678888999999999999999999877664333333222   44456677889999999999999999988654    


Q ss_pred             hhcCCCChhHHHHHHHH-HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 019054          291 MRDGDDNVKALFRQGQA-YMALNDVDAAVESFEKALKLEPNDGGIKKELAV  340 (347)
Q Consensus       291 l~~~p~~~~a~~~~g~~-~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~  340 (347)
                      +.+-|..+..-.   .+ ...+|--..|+-+|   ++..| ||.+...+..
T Consensus        81 ltLiPQCp~~~C---~afi~sLGCCk~ALl~F---~KRHP-NP~iA~~vq~  124 (140)
T PF10952_consen   81 LTLIPQCPNTEC---EAFIDSLGCCKKALLDF---MKRHP-NPEIARLVQH  124 (140)
T ss_pred             HHhccCCCCcch---HHHHHhhhccHHHHHHH---HHhCC-CHHHHHHHHh
Confidence            566666543211   12 23456666676665   55666 6666665544

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=94.04  E-value=0.21  Score=46.21  Aligned_cols=96  Identities=20%  Similarity=0.171  Sum_probs=78.4

Q ss_pred             HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (347)
Q Consensus       214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  293 (347)
                      .+..+|.-|..-|+++.|++.|.++-.|..               .....+.++.|+-.+-..+++|.....+-.+|...
T Consensus       152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCT---------------s~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st  216 (466)
T KOG0686|consen  152 ALEDLGDHYLDCGQLDNALRCYSRARDYCT---------------SAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST  216 (466)
T ss_pred             HHHHHHHHHHHhccHHHHHhhhhhhhhhhc---------------chHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence            456788888999999999999999766542               45667788999999999999999999999998866


Q ss_pred             C--------CCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 019054          294 G--------DDNVKALFRQGQAYMALNDVDAAVESFEKA  324 (347)
Q Consensus       294 ~--------p~~~~a~~~~g~~~~~~~~~~~A~~~~~~a  324 (347)
                      -        .-.++....-|.+...+++|..|.+.|-.+
T Consensus       217 ~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~  255 (466)
T KOG0686|consen  217 PDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLA  255 (466)
T ss_pred             chhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            2        112567778889999999999999988655

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=94.02  E-value=0.26  Score=49.88  Aligned_cols=106  Identities=16%  Similarity=0.026  Sum_probs=77.5

Q ss_pred             HHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC
Q 019054          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (347)
Q Consensus       215 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~  294 (347)
                      ..-.|-.+++.|++++|.... .++..                 ..+.+-..+--+-.||..++++++|...|++++..+
T Consensus        46 ~vLkaLsl~r~gk~~ea~~~L-e~~~~-----------------~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~  107 (932)
T KOG2053|consen   46 KVLKALSLFRLGKGDEALKLL-EALYG-----------------LKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKY  107 (932)
T ss_pred             HHHHHHHHHHhcCchhHHHHH-hhhcc-----------------CCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC
Confidence            344566788899999999444 34331                 222234455667799999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 019054          295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELA  339 (347)
Q Consensus       295 p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~  339 (347)
                      |. .+.++.+=.+|.+.+.|.+=.+.--+..+..|.++-..+...
T Consensus       108 P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~  151 (932)
T KOG2053|consen  108 PS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVI  151 (932)
T ss_pred             Cc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHH
Confidence            98 888888889999988887755554455557788776544433

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.00  E-value=1.5  Score=41.81  Aligned_cols=99  Identities=18%  Similarity=0.151  Sum_probs=75.5

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+..+.-+|--...-+.|+.|..+|..|.+...               .....+-+..|+|..|+..++-+.    +.++
T Consensus       366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~---------------~~dl~a~~nlnlAi~YL~~~~~ed----~y~~  426 (629)
T KOG2300|consen  366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTE---------------SIDLQAFCNLNLAISYLRIGDAED----LYKA  426 (629)
T ss_pred             HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhh---------------HHHHHHHHHHhHHHHHHHhccHHH----HHHH
Confidence            355566777777788899999999999998543               344567788899999999776433    2333


Q ss_pred             h-hcCCCC----------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 019054          291 M-RDGDDN----------VKALFRQGQAYMALNDVDAAVESFEKALKLE  328 (347)
Q Consensus       291 l-~~~p~~----------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~  328 (347)
                      + .+.|.|          ..++|..|.-.+..+++.||...+.+.++..
T Consensus       427 ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma  475 (629)
T KOG2300|consen  427 LDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA  475 (629)
T ss_pred             HHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence            3 344443          4578889999999999999999999999886

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=93.97  E-value=0.13  Score=46.10  Aligned_cols=82  Identities=12%  Similarity=0.046  Sum_probs=70.0

Q ss_pred             HhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHH-HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 019054          260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFR-QGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (347)
Q Consensus       260 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~-~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l  338 (347)
                      -+.++.+|...+....+.+.|.+.-..|.+++..+|.|+..|.. .+.-+...++++.+...|.++++++|.++.++.+.
T Consensus       103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey  182 (435)
T COG5191         103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY  182 (435)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence            34566777777777788899999999999999999999998877 56678888999999999999999999999988765


Q ss_pred             HHH
Q 019054          339 AVA  341 (347)
Q Consensus       339 ~~~  341 (347)
                      -+.
T Consensus       183 fr~  185 (435)
T COG5191         183 FRM  185 (435)
T ss_pred             HHH
Confidence            443

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=93.96  E-value=0.29  Score=36.08  Aligned_cols=58  Identities=19%  Similarity=0.220  Sum_probs=47.0

Q ss_pred             HHHHcCChHHHHHHHHHHhhcCCC---------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 019054          273 CKLKLGDLKGALLDTEFAMRDGDD---------NVKALFRQGQAYMALNDVDAAVESFEKALKLEPN  330 (347)
Q Consensus       273 ~~~~l~~~~~A~~~~~~al~~~p~---------~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  330 (347)
                      -..+.++|..|++.+.+.+.....         ..-++.++|.++...|++++|+..+++|+++...
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are   73 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE   73 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            345789999999888888755322         1467889999999999999999999999998653

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=93.83  E-value=0.27  Score=38.53  Aligned_cols=78  Identities=10%  Similarity=0.066  Sum_probs=53.7

Q ss_pred             HHHHcCccccc---hhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          214 SIKVFGNEHYK---KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       214 ~~~~~g~~~~~---~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      ..++.+..+.+   ..+-++-+..++..++.                ......-.+.+-+|..+.++++|++++.+++..
T Consensus        34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~----------------~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~l   97 (149)
T KOG3364|consen   34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKS----------------AHPERRRECLYYLAVGHYRLKEYSKSLRYVDAL   97 (149)
T ss_pred             HHHHHHHHHHcccchHHHHHhHHHHHHHhhh----------------cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHH
Confidence            34555555543   33455566666666540                022234467788999999999999999999999


Q ss_pred             hhcCCCChhHHHHHHHH
Q 019054          291 MRDGDDNVKALFRQGQA  307 (347)
Q Consensus       291 l~~~p~~~~a~~~~g~~  307 (347)
                      |+.+|+|.+|.-..-.+
T Consensus        98 l~~e~~n~Qa~~Lk~~i  114 (149)
T KOG3364|consen   98 LETEPNNRQALELKETI  114 (149)
T ss_pred             HhhCCCcHHHHHHHHHH
Confidence            99999998876554433

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=93.78  E-value=1.7  Score=37.67  Aligned_cols=119  Identities=15%  Similarity=0.104  Sum_probs=71.4

Q ss_pred             cccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChH-HH-HHHHHHHhh-cC-CC
Q 019054          221 EHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLK-GA-LLDTEFAMR-DG-DD  296 (347)
Q Consensus       221 ~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~-~A-~~~~~~al~-~~-p~  296 (347)
                      .+|..|+|+.|++....||+.=     +.-+ +.-..+.....++-...-|....+.|..- -. ...+..+.. .+ |+
T Consensus        92 W~~D~Gd~~~AL~ia~yAI~~~-----l~~P-d~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd  165 (230)
T PHA02537         92 WRFDIGDFDGALEIAEYALEHG-----LTMP-DQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPD  165 (230)
T ss_pred             eeeeccCHHHHHHHHHHHHHcC-----CCCC-ccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCCh
Confidence            4578999999999999999821     1111 11111234444555566666666776632 21 111222211 11 33


Q ss_pred             C--hhHHHHHHHHHH---------hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          297 N--VKALFRQGQAYM---------ALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       297 ~--~~a~~~~g~~~~---------~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      .  +|-|-..|.++.         ..++...|+..+++|++++| +..++..+.+++++++
T Consensus       166 ~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~-k~GVK~~i~~l~~~lr  225 (230)
T PHA02537        166 EVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLND-KCGVKKDIERLERRLK  225 (230)
T ss_pred             HHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCC-CCChHHHHHHHHHHHh
Confidence            3  455556677663         45688999999999999997 4556666666666653

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=93.66  E-value=0.56  Score=40.35  Aligned_cols=91  Identities=13%  Similarity=0.035  Sum_probs=54.7

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .|.....+|..+-..++-+.....+++|+..+..+........     ..-....+++-+|..+.++|++++|+.++.++
T Consensus       117 ~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~-----~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~v  191 (214)
T PF09986_consen  117 KAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPI-----EGMDEATLLYLIGELNRRLGNYDEAKRWFSRV  191 (214)
T ss_pred             HHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCC-----CCchHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            4555555666665556555555555555554443322221111     11123457888999999999999999999999


Q ss_pred             hhcCCCCh-hHHHHHHH
Q 019054          291 MRDGDDNV-KALFRQGQ  306 (347)
Q Consensus       291 l~~~p~~~-~a~~~~g~  306 (347)
                      +.....+. ..+..+|.
T Consensus       192 i~~~~~s~~~~l~~~AR  208 (214)
T PF09986_consen  192 IGSKKASKEPKLKDMAR  208 (214)
T ss_pred             HcCCCCCCcHHHHHHHH
Confidence            97654433 34555544

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=93.54  E-value=0.35  Score=50.50  Aligned_cols=104  Identities=19%  Similarity=0.196  Sum_probs=75.7

Q ss_pred             cCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHc----C---ChHHHHHHHHHH
Q 019054          218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL----G---DLKGALLDTEFA  290 (347)
Q Consensus       218 ~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l----~---~~~~A~~~~~~a  290 (347)
                      ..+++...+.|+.|+..|++....++               -.....++.+..|...+..    +   .+.+|+.-+++.
T Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  545 (932)
T PRK13184        481 VPDAFLAEKLYDQALIFYRRIRESFP---------------GRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL  545 (932)
T ss_pred             CcHHHHhhHHHHHHHHHHHHHhhcCC---------------CcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh
Confidence            45566778899999999998877432               2233456777777777653    2   355555555443


Q ss_pred             hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 019054          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKE  337 (347)
Q Consensus       291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~  337 (347)
                      - -.|.-+--|.-.|.+|..+++|+|-+++|..|++..|+++.+-..
T Consensus       546 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  591 (932)
T PRK13184        546 H-GGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRL  591 (932)
T ss_pred             c-CCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHH
Confidence            2 235556778888999999999999999999999999999886543

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=93.52  E-value=1.3  Score=41.02  Aligned_cols=98  Identities=17%  Similarity=0.015  Sum_probs=75.8

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  291 (347)
                      +..+.-.+....-.|+|+.|...|+.-+.                  .......-+..+=.....+|..+.|+.|...|-
T Consensus       120 pLIhlLeAQaal~eG~~~~Ar~kfeAMl~------------------dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa  181 (531)
T COG3898         120 PLIHLLEAQAALLEGDYEDARKKFEAMLD------------------DPETRLLGLRGLYLEAQRLGAREAARHYAERAA  181 (531)
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHHHhc------------------ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            33445556667778999999999998887                  333333333334444567899999999999999


Q ss_pred             hcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019054          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL  327 (347)
Q Consensus       292 ~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l  327 (347)
                      ...|.-..++...-......|+|+.|++..+...+-
T Consensus       182 ~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~  217 (531)
T COG3898         182 EKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAA  217 (531)
T ss_pred             hhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            999999888888888899999999999998766543

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=93.48  E-value=0.28  Score=29.07  Aligned_cols=33  Identities=12%  Similarity=0.202  Sum_probs=20.7

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHH--HHHHHhhCCCC
Q 019054          299 KALFRQGQAYMALNDVDAAVES--FEKALKLEPND  331 (347)
Q Consensus       299 ~a~~~~g~~~~~~~~~~~A~~~--~~~al~l~P~~  331 (347)
                      +.++.+|..+..+|++++|+..  |.-+..++|.|
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            3466677777777777777777  33666666543

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=93.23  E-value=0.33  Score=51.54  Aligned_cols=64  Identities=13%  Similarity=0.089  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019054          264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL  327 (347)
Q Consensus       264 ~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l  327 (347)
                      ......-|+..++.|+.+.+...++..|..+|.....|.-....-...++.+-+...|++++.+
T Consensus      1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred             HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence            3444444555555555555555555555555555555555445545555555555555555544

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=93.18  E-value=1.1  Score=43.61  Aligned_cols=104  Identities=23%  Similarity=0.127  Sum_probs=81.5

Q ss_pred             cccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHH-HHHHhhcCCCChh
Q 019054          221 EHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLD-TEFAMRDGDDNVK  299 (347)
Q Consensus       221 ~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~-~~~al~~~p~~~~  299 (347)
                      .+...++...|+.....++.                  .++..+.++.|++.+....+..-.++.. +..+....|++..
T Consensus        76 ~~~~~~~~~~~~~~~~~~l~------------------~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~  137 (620)
T COG3914          76 LLAPLADSTLAFLAKRIPLS------------------VNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAE  137 (620)
T ss_pred             hccccccchhHHHHHhhhHh------------------cCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHH
Confidence            33445556666666777776                  7888999999999999888776665554 4559999999987


Q ss_pred             HHHHH------HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054          300 ALFRQ------GQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (347)
Q Consensus       300 a~~~~------g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  342 (347)
                      .+..+      +.....+++..++...++++..+.|.++.+...+....
T Consensus       138 ~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r  186 (620)
T COG3914         138 FLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTAR  186 (620)
T ss_pred             HHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHH
Confidence            76666      88999999999999999999999999987776665543

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.04  E-value=0.46  Score=46.55  Aligned_cols=74  Identities=15%  Similarity=0.179  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 019054          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN------VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (347)
Q Consensus       265 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l  338 (347)
                      .++.|-|.-.+++++|..+++.|...+..-|.+      +|....++.||..+.+.+.|.+.+++|-+.+|.++--...+
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~  434 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM  434 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence            456788899999999999999999999776654      78888999999999999999999999999999877544443

>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.02  E-value=0.73  Score=43.58  Aligned_cols=123  Identities=11%  Similarity=0.145  Sum_probs=64.6

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHH-H-HHHHHcCC-----hHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNS-S-ACKLKLGD-----LKGA  283 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nl-a-~~~~~l~~-----~~~A  283 (347)
                      ........|-.++..|+|.+|+..|+..|..+.-+......+.++   .......+..-+ | .+-++.+.     .+..
T Consensus       203 ~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e---~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~  279 (422)
T PF06957_consen  203 SLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDE---AKELIEICREYILGLSIELERRELPKDPVEDQ  279 (422)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHH---HHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhccccchhhH
Confidence            334455678888999999999999999999776543333222222   222222222111 1 11122222     1222


Q ss_pred             HHHHHHHh-----hcCCCChhHHHHHH-HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 019054          284 LLDTEFAM-----RDGDDNVKALFRQG-QAYMALNDVDAAVESFEKALKLEPNDGGIKK  336 (347)
Q Consensus       284 ~~~~~~al-----~~~p~~~~a~~~~g-~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~  336 (347)
                      .+.++-|.     ++.|.+-..-++.| ...++.++|.-|...-++.|++.|..+.+.+
T Consensus       280 kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~q  338 (422)
T PF06957_consen  280 KRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAEQ  338 (422)
T ss_dssp             HHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHHH
T ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHH
Confidence            23333332     44444433333333 3456679999999999999999998765433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=92.88  E-value=1.1  Score=47.74  Aligned_cols=66  Identities=17%  Similarity=0.079  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 019054          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN  330 (347)
Q Consensus       265 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  330 (347)
                      ..|..|+-+|.+-+++++|.+.++.-++......+.|...|..++...+-++|...+.+|++.-|.
T Consensus      1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred             HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence            455666666666666666666666666655555666666666666666666666666666666665

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.81  E-value=0.18  Score=30.32  Aligned_cols=30  Identities=17%  Similarity=0.174  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhhcC
Q 019054          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (347)
Q Consensus       265 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~  294 (347)
                      .+|..+|.+-+..++|+.|+.++.++|++.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            468889999999999999999999999764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=92.72  E-value=2.3  Score=38.22  Aligned_cols=105  Identities=24%  Similarity=0.181  Sum_probs=76.3

Q ss_pred             HHHHHcCccccc----hhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhH-HHHHHHHHHHHHHcC-------Ch
Q 019054          213 DSIKVFGNEHYK----KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTK-SQIFTNSSACKLKLG-------DL  280 (347)
Q Consensus       213 ~~~~~~g~~~~~----~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~nla~~~~~l~-------~~  280 (347)
                      .....+|..+..    ..++.+|..+|.+|.+                  ..... ..+.++++.+|..-.       +.
T Consensus       110 ~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~------------------~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~  171 (292)
T COG0790         110 EALFNLGLMYANGRGVPLDLVKALKYYEKAAK------------------LGNVEAALAMYRLGLAYLSGLQALAVAYDD  171 (292)
T ss_pred             HHHHhHHHHHhcCCCcccCHHHHHHHHHHHHH------------------cCChhHHHHHHHHHHHHHcChhhhcccHHH
Confidence            355666666665    5599999999999987                  21111 344777777776631       23


Q ss_pred             HHHHHHHHHHhhcCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 019054          281 KGALLDTEFAMRDGDDNVKALFRQGQAYMA----LNDVDAAVESFEKALKLEPNDGGIKKELA  339 (347)
Q Consensus       281 ~~A~~~~~~al~~~p~~~~a~~~~g~~~~~----~~~~~~A~~~~~~al~l~P~~~~~~~~l~  339 (347)
                      ..|+..+.+|....  +..+.+++|.+|..    ..++++|..+|++|.+...  ......+.
T Consensus       172 ~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~  230 (292)
T COG0790         172 KKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG  230 (292)
T ss_pred             HhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence            37888998888776  88999999988855    4589999999999999875  55555544

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=92.67  E-value=0.41  Score=45.11  Aligned_cols=71  Identities=23%  Similarity=0.295  Sum_probs=57.7

Q ss_pred             HHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHH
Q 019054          270 SSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN----DGGIKKELAVAKKK  344 (347)
Q Consensus       270 la~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~----~~~~~~~l~~~~~~  344 (347)
                      =|...+..|+|.++..++.-..+++| ++.++..+|.+++..++|++|..++..   +-|+    |..+.+.+..|++-
T Consensus       468 DAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~---LP~n~~~~dskvqKAl~lCqKh  542 (549)
T PF07079_consen  468 DAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK---LPPNERMRDSKVQKALALCQKH  542 (549)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh---CCCchhhHHHHHHHHHHHHHHh
Confidence            35556779999999999999999999 999999999999999999999998764   3343    34466666666653

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=92.54  E-value=1.3  Score=40.81  Aligned_cols=120  Identities=14%  Similarity=0.166  Sum_probs=90.5

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+..+...+....+.|+++.|.....++..+...              .....+.+.+..+......|+..+|+...+..
T Consensus       145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~--------------~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~  210 (352)
T PF02259_consen  145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPS--------------SESLLPRVFLEYAKLLWAQGEQEEAIQKLREL  210 (352)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCc--------------ccCCCcchHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4566788888889999999999999888762110              11124566777788888999999999988887


Q ss_pred             hhc--C-C-------------------------------CChhHHHHHHHHHHhc------CCHHHHHHHHHHHHhhCCC
Q 019054          291 MRD--G-D-------------------------------DNVKALFRQGQAYMAL------NDVDAAVESFEKALKLEPN  330 (347)
Q Consensus       291 l~~--~-p-------------------------------~~~~a~~~~g~~~~~~------~~~~~A~~~~~~al~l~P~  330 (347)
                      +.-  . +                               ..+++++.+|.-...+      +.+++++..|+++.+++|.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  290 (352)
T PF02259_consen  211 LKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS  290 (352)
T ss_pred             HHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh
Confidence            761  1 0                               0157888888888888      8999999999999999998


Q ss_pred             CHHHHHHHHHHHHH
Q 019054          331 DGGIKKELAVAKKK  344 (347)
Q Consensus       331 ~~~~~~~l~~~~~~  344 (347)
                      ...++..++.....
T Consensus       291 ~~k~~~~~a~~~~~  304 (352)
T PF02259_consen  291 WEKAWHSWALFNDK  304 (352)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88877776665443

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=92.17  E-value=2.3  Score=34.06  Aligned_cols=78  Identities=14%  Similarity=-0.030  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054          267 FTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (347)
Q Consensus       267 ~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  344 (347)
                      +..+..+-....+++++.......--+.|..+..-..-|..+...|+|.+|+..++...+-.|..+..+..++.|...
T Consensus        13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a   90 (153)
T TIGR02561        13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA   90 (153)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence            333444444456666665555555555666666666666666666666666666666555555555555555555443

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=92.07  E-value=0.65  Score=41.36  Aligned_cols=62  Identities=16%  Similarity=-0.064  Sum_probs=51.3

Q ss_pred             HHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054          283 ALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (347)
Q Consensus       283 A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  344 (347)
                      |+.+|.+|+.+.|++...|..+|.++...++.=+|+-.|-+++-..-..+.+..+|..+-++
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999987655567788888777655

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=92.05  E-value=0.21  Score=48.32  Aligned_cols=102  Identities=18%  Similarity=0.191  Sum_probs=83.3

Q ss_pred             HHcCcccc-chhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC
Q 019054          216 KVFGNEHY-KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (347)
Q Consensus       216 ~~~g~~~~-~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~  294 (347)
                      ..++..|. .+|+..+|+.+|..|+-..+                +-..-.+++.+|.++.++|...+|--.+..|+.-.
T Consensus       216 H~~as~YWR~~G~~~~A~~Ca~~a~hf~~----------------~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA  279 (886)
T KOG4507|consen  216 HNMASFYWRIKGEPYQAVECAMRALHFSS----------------RHNKDIALLSLATVLHRAGFSADAAVILHAALDDA  279 (886)
T ss_pred             HHHHHHHHHHcCChhhhhHHHHHHhhhCC----------------cccccchhhhHHHHHHHcccccchhheeehhccCC
Confidence            33444443 47899999999999998432                12233578899999999999999988888888888


Q ss_pred             CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 019054          295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG  333 (347)
Q Consensus       295 p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~  333 (347)
                      |.-...+|.+|.++.++++|.....+|..+.+..|.-.+
T Consensus       280 ~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q  318 (886)
T KOG4507|consen  280 DFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQ  318 (886)
T ss_pred             ccccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhH
Confidence            777788999999999999999999999999999997443

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.95  E-value=2  Score=36.05  Aligned_cols=103  Identities=14%  Similarity=0.213  Sum_probs=69.5

Q ss_pred             cCccccchhhH---HHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhH------HHHHHHHHHHHHHcCChHHHHHHHH
Q 019054          218 FGNEHYKKQDY---KMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTK------SQIFTNSSACKLKLGDLKGALLDTE  288 (347)
Q Consensus       218 ~g~~~~~~g~y---~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~nla~~~~~l~~~~~A~~~~~  288 (347)
                      .|..++...+-   .+|-..|++++..+..-   .+.......++...+      .-+-+.+|..+...+++++|+..++
T Consensus        37 fGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak---~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~  113 (207)
T COG2976          37 FGWRYWQSHQVEQAQEASAQYQNAIKAVQAK---KPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLK  113 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence            45556554444   47888899998865421   111111112222222      1234567888889999999999999


Q ss_pred             HHhhcCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHH
Q 019054          289 FAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEK  323 (347)
Q Consensus       289 ~al~~~p~~---~~a~~~~g~~~~~~~~~~~A~~~~~~  323 (347)
                      .++....+.   .-+-.|+|.+...+|.+++|+..+..
T Consensus       114 ~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t  151 (207)
T COG2976         114 QALAQTKDENLKALAALRLARVQLQQKKADAALKTLDT  151 (207)
T ss_pred             HHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence            999665443   45678899999999999999988764

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=91.82  E-value=3.3  Score=38.08  Aligned_cols=83  Identities=13%  Similarity=0.049  Sum_probs=67.3

Q ss_pred             HHhhHHHHHHHHHHHHHHcCC------------hHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 019054          259 LRKTKSQIFTNSSACKLKLGD------------LKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALK  326 (347)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~------------~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~  326 (347)
                      .+|.+..+|..+....-++-.            .+..+..+++||+.+|++.+.+..+-.+.....+-++..+-+++++.
T Consensus        14 ~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~   93 (321)
T PF08424_consen   14 ENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLF   93 (321)
T ss_pred             hCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            677777777777665555432            45668899999999999999988888888899999999999999999


Q ss_pred             hCCCCHHHHHHHHHH
Q 019054          327 LEPNDGGIKKELAVA  341 (347)
Q Consensus       327 l~P~~~~~~~~l~~~  341 (347)
                      .+|++..++...-..
T Consensus        94 ~~~~~~~LW~~yL~~  108 (321)
T PF08424_consen   94 KNPGSPELWREYLDF  108 (321)
T ss_pred             HCCCChHHHHHHHHH
Confidence            999999887765443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=91.79  E-value=0.91  Score=45.99  Aligned_cols=65  Identities=18%  Similarity=0.119  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHh----------hcCCC----------ChhHHHHHHHHHHhcCCHHHHHHHHH
Q 019054          263 KSQIFTNSSACKLKLGDLKGALLDTEFAM----------RDGDD----------NVKALFRQGQAYMALNDVDAAVESFE  322 (347)
Q Consensus       263 ~~~~~~nla~~~~~l~~~~~A~~~~~~al----------~~~p~----------~~~a~~~~g~~~~~~~~~~~A~~~~~  322 (347)
                      .-..|+|.|.-+...++.+.|+++|+++=          .-+|.          +.+.|.+-|+-+...|+.+.|+..|.
T Consensus       857 Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~  936 (1416)
T KOG3617|consen  857 LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYS  936 (1416)
T ss_pred             hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHH
Confidence            34568889988888999999999998862          22333          34667778999999999999999999


Q ss_pred             HHHhh
Q 019054          323 KALKL  327 (347)
Q Consensus       323 ~al~l  327 (347)
                      .|-..
T Consensus       937 ~A~D~  941 (1416)
T KOG3617|consen  937 SAKDY  941 (1416)
T ss_pred             Hhhhh
Confidence            88654

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=91.78  E-value=0.27  Score=26.61  Aligned_cols=23  Identities=26%  Similarity=0.251  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHH
Q 019054          300 ALFRQGQAYMALNDVDAAVESFE  322 (347)
Q Consensus       300 a~~~~g~~~~~~~~~~~A~~~~~  322 (347)
                      +++.+|.++..+|++++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            45556666666666666655543

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.66  E-value=2.6  Score=41.11  Aligned_cols=117  Identities=21%  Similarity=0.050  Sum_probs=85.2

Q ss_pred             HHcCccccc---hhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh-
Q 019054          216 KVFGNEHYK---KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM-  291 (347)
Q Consensus       216 ~~~g~~~~~---~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al-  291 (347)
                      ...|..+|+   ...|++|...|.-|....+-      -.-.......|....-+..+|.++..+|+.+-|.....++| 
T Consensus       239 sq~~isfF~~~hs~sYeqaq~~F~~av~~~d~------n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly  312 (665)
T KOG2422|consen  239 SQKGISFFKFEHSNSYEQAQRDFYLAVIVHDP------NNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLY  312 (665)
T ss_pred             ccCceeEEEeecchHHHHHHHHHHHHHhhcCC------cceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            445666664   66788999888888774321      01111112457788889999999999999988877777766 


Q ss_pred             -----------------h---cCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-CHHHHHHH
Q 019054          292 -----------------R---DGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPN-DGGIKKEL  338 (347)
Q Consensus       292 -----------------~---~~p~~---~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~-~~~~~~~l  338 (347)
                                       +   +.|.|   ..++++.-+.+.+.|.+.-|.+.++-.++++|. |+...-.+
T Consensus       313 ~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~  383 (665)
T KOG2422|consen  313 VFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYL  383 (665)
T ss_pred             HHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHH
Confidence                             1   12333   568888999999999999999999999999998 77654443

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=91.26  E-value=5.1  Score=37.45  Aligned_cols=85  Identities=14%  Similarity=-0.020  Sum_probs=67.5

Q ss_pred             hhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CCCChhHHHHHHHHHHh---cCCHHHHHHHHHH-HHhhCCCCH
Q 019054          261 KTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD----GDDNVKALFRQGQAYMA---LNDVDAAVESFEK-ALKLEPNDG  332 (347)
Q Consensus       261 ~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~----~p~~~~a~~~~g~~~~~---~~~~~~A~~~~~~-al~l~P~~~  332 (347)
                      -.......++-.+|....+|+.-+...+..-.+    -++.....+..|.|+..   .|+.++|+..+.. .....+.++
T Consensus       138 ~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~  217 (374)
T PF13281_consen  138 LLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDP  217 (374)
T ss_pred             hcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCCh
Confidence            344566778889999999999999988877666    34566777788888888   8999999999998 455566788


Q ss_pred             HHHHHHHHHHHHh
Q 019054          333 GIKKELAVAKKKV  345 (347)
Q Consensus       333 ~~~~~l~~~~~~~  345 (347)
                      +..-.++.+.+.+
T Consensus       218 d~~gL~GRIyKD~  230 (374)
T PF13281_consen  218 DTLGLLGRIYKDL  230 (374)
T ss_pred             HHHHHHHHHHHHH
Confidence            8888888887654

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=90.76  E-value=2.6  Score=41.90  Aligned_cols=100  Identities=21%  Similarity=0.088  Sum_probs=51.5

Q ss_pred             HHHHHHcCccccc-----hhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcC-----ChH
Q 019054          212 VDSIKVFGNEHYK-----KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-----DLK  281 (347)
Q Consensus       212 a~~~~~~g~~~~~-----~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-----~~~  281 (347)
                      +.+...+|..++.     .++.+.|+.+|..+.+-+...             .......+.+.+|.+|.+-.     ++.
T Consensus       244 ~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~-------------a~~~~~~a~~~lg~~Y~~g~~~~~~d~~  310 (552)
T KOG1550|consen  244 SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKA-------------ATKGLPPAQYGLGRLYLQGLGVEKIDYE  310 (552)
T ss_pred             hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHH-------------HhhcCCccccHHHHHHhcCCCCccccHH
Confidence            4445555555543     578999999999998721100             11112334445555555522     344


Q ss_pred             HHHHHHHHHhhcCCCChhHHHHHHHHHHhcC---CHHHHHHHHHHHHh
Q 019054          282 GALLDTEFAMRDGDDNVKALFRQGQAYMALN---DVDAAVESFEKALK  326 (347)
Q Consensus       282 ~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~---~~~~A~~~~~~al~  326 (347)
                      .|+.++.+|-.+.  ++.+.+++|.+|..-.   ++..|..+|..|.+
T Consensus       311 ~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~  356 (552)
T KOG1550|consen  311 KALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK  356 (552)
T ss_pred             HHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHH
Confidence            4555555554443  3445555555554433   34455555555544

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=90.70  E-value=1.2  Score=27.63  Aligned_cols=24  Identities=25%  Similarity=0.547  Sum_probs=15.4

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHH
Q 019054          302 FRQGQAYMALNDVDAAVESFEKAL  325 (347)
Q Consensus       302 ~~~g~~~~~~~~~~~A~~~~~~al  325 (347)
                      +.+|.+|..+|+++.|...+++.+
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl   26 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVI   26 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHH
Confidence            455666666666666666666666

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=90.66  E-value=3.7  Score=38.35  Aligned_cols=69  Identities=23%  Similarity=0.278  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHH---cCChHHHHHHHHHHh-hcCCCChhHHHHHHHHHHhc---------CCHHHHHHHHHHHHhhCC
Q 019054          263 KSQIFTNSSACKLK---LGDLKGALLDTEFAM-RDGDDNVKALFRQGQAYMAL---------NDVDAAVESFEKALKLEP  329 (347)
Q Consensus       263 ~~~~~~nla~~~~~---l~~~~~A~~~~~~al-~~~p~~~~a~~~~g~~~~~~---------~~~~~A~~~~~~al~l~P  329 (347)
                      ...+....|.++.+   .|+.++|+..+..++ ...+.++..+...|.+|..+         ...++|+..|.++.+++|
T Consensus       178 ~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~  257 (374)
T PF13281_consen  178 QHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP  257 (374)
T ss_pred             chHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc
Confidence            44456667777777   899999999999955 45567788999999887653         347789999999999997


Q ss_pred             CC
Q 019054          330 ND  331 (347)
Q Consensus       330 ~~  331 (347)
                      +.
T Consensus       258 ~~  259 (374)
T PF13281_consen  258 DY  259 (374)
T ss_pred             cc
Confidence            53

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=90.58  E-value=0.98  Score=31.80  Aligned_cols=34  Identities=15%  Similarity=0.155  Sum_probs=29.6

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhh
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDI  244 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~  244 (347)
                      .|..+...|..+=+.|+|++|+.+|..|++++..
T Consensus         5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~   38 (76)
T cd02681           5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY   38 (76)
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            5677778888888999999999999999998765

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=90.55  E-value=0.77  Score=44.12  Aligned_cols=71  Identities=23%  Similarity=0.169  Sum_probs=60.5

Q ss_pred             HcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhc---CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          276 KLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMAL---NDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       276 ~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~---~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      ....+..|+.+|.+++...|.....|.+++.+++..   |+--.|+.+...|++++|....++..|.++...+.
T Consensus       386 y~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~  459 (758)
T KOG1310|consen  386 YESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELT  459 (758)
T ss_pred             hhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHh
Confidence            345678899999999999999999999999998885   46667999999999999998888888887766553

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=90.52  E-value=4.1  Score=37.97  Aligned_cols=57  Identities=25%  Similarity=0.165  Sum_probs=51.1

Q ss_pred             CChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 019054          278 GDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIK  335 (347)
Q Consensus       278 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~  335 (347)
                      -+...|..+..+++++.|+...+-.--+.+++..|+..++-..++.+.+.+|+ +++.
T Consensus       243 adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia  299 (531)
T COG3898         243 ADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDIA  299 (531)
T ss_pred             CChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHHH
Confidence            45889999999999999999999999999999999999999999999999984 4443

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=90.21  E-value=1  Score=30.93  Aligned_cols=38  Identities=21%  Similarity=0.275  Sum_probs=30.7

Q ss_pred             hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccc
Q 019054          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE  247 (347)
Q Consensus       210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~  247 (347)
                      +.|..+...|..+-+.|+|++|+.+|.+|+.++.....
T Consensus         3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~   40 (69)
T PF04212_consen    3 DKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQALK   40 (69)
T ss_dssp             HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Confidence            35666777777888899999999999999998765533

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=90.02  E-value=7.3  Score=31.27  Aligned_cols=57  Identities=11%  Similarity=-0.051  Sum_probs=50.4

Q ss_pred             HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHH
Q 019054          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVD  315 (347)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~  315 (347)
                      +.|....+-.--|..++..|+|.+|+..++.+.+-.+..+-+.-.++.|+..+|+.+
T Consensus        39 LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~   95 (153)
T TIGR02561        39 LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE   95 (153)
T ss_pred             hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence            778888888888999999999999999999999988888877778889999999863

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=89.94  E-value=3.8  Score=40.75  Aligned_cols=92  Identities=18%  Similarity=0.181  Sum_probs=73.2

Q ss_pred             HHHcCccccch----h-hHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcC---ChHHHHHH
Q 019054          215 IKVFGNEHYKK----Q-DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG---DLKGALLD  286 (347)
Q Consensus       215 ~~~~g~~~~~~----g-~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~---~~~~A~~~  286 (347)
                      ...+|..|++.    . ++..|+.+|.++.+                    -.++.+.+++|.|+..-.   ++..|..+
T Consensus       291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~--------------------~g~~~a~~~lg~~~~~g~~~~d~~~A~~y  350 (552)
T KOG1550|consen  291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAE--------------------LGNPDAQYLLGVLYETGTKERDYRRAFEY  350 (552)
T ss_pred             ccHHHHHHhcCCCCccccHHHHHHHHHHHHh--------------------cCCchHHHHHHHHHHcCCccccHHHHHHH
Confidence            34566666652    2 78889999999966                    345678888999998765   67899999


Q ss_pred             HHHHhhcCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhhC
Q 019054          287 TEFAMRDGDDNVKALFRQGQAYMA----LNDVDAAVESFEKALKLE  328 (347)
Q Consensus       287 ~~~al~~~p~~~~a~~~~g~~~~~----~~~~~~A~~~~~~al~l~  328 (347)
                      |..|...  .+..|.+++|.+|..    ..+.+.|..+|+++.+..
T Consensus       351 y~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g  394 (552)
T KOG1550|consen  351 YSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG  394 (552)
T ss_pred             HHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence            9998876  478999999999876    357889999999999987

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=89.81  E-value=1.6  Score=32.99  Aligned_cols=70  Identities=23%  Similarity=0.212  Sum_probs=53.8

Q ss_pred             HHHHHHHcCChHHHHHHHHHHhhcCCCCh---hHHHHHHHHHHhcCC-----------HHHHHHHHHHHHhhCCCCHHHH
Q 019054          270 SSACKLKLGDLKGALLDTEFAMRDGDDNV---KALFRQGQAYMALND-----------VDAAVESFEKALKLEPNDGGIK  335 (347)
Q Consensus       270 la~~~~~l~~~~~A~~~~~~al~~~p~~~---~a~~~~g~~~~~~~~-----------~~~A~~~~~~al~l~P~~~~~~  335 (347)
                      +|.-++..|++-+|++..+..+...+++.   -.+...|.++..+..           .-.|+++|.++..+.|......
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            56778899999999999999998887765   456667877766542           2358999999999999875555


Q ss_pred             HHHH
Q 019054          336 KELA  339 (347)
Q Consensus       336 ~~l~  339 (347)
                      ..|+
T Consensus        82 ~~la   85 (111)
T PF04781_consen   82 FELA   85 (111)
T ss_pred             HHHH
Confidence            4444

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=89.68  E-value=1.1  Score=26.55  Aligned_cols=33  Identities=12%  Similarity=-0.002  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHH--HHhhcCCCC
Q 019054          265 QIFTNSSACKLKLGDLKGALLDTE--FAMRDGDDN  297 (347)
Q Consensus       265 ~~~~nla~~~~~l~~~~~A~~~~~--~al~~~p~~  297 (347)
                      +.+..+|..+...|++++|+..++  -+..+++.|
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            356778999999999999999944  888777754

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=89.65  E-value=11  Score=31.36  Aligned_cols=81  Identities=19%  Similarity=0.131  Sum_probs=62.9

Q ss_pred             HhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CCHHH
Q 019054          260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEP--NDGGI  334 (347)
Q Consensus       260 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~---~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P--~~~~~  334 (347)
                      ....-.++..+|.-|.+.|++++|++.|.++.......   ...++++-.+....++|......+.++-.+-.  .+.+.
T Consensus        32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~  111 (177)
T PF10602_consen   32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWER  111 (177)
T ss_pred             hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHH
Confidence            33445789999999999999999999999988765433   46778888888999999999999999877643  34555


Q ss_pred             HHHHHH
Q 019054          335 KKELAV  340 (347)
Q Consensus       335 ~~~l~~  340 (347)
                      +..|..
T Consensus       112 ~nrlk~  117 (177)
T PF10602_consen  112 RNRLKV  117 (177)
T ss_pred             HHHHHH
Confidence            544443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=89.52  E-value=1.4  Score=44.65  Aligned_cols=113  Identities=19%  Similarity=0.151  Sum_probs=68.0

Q ss_pred             HHHcCccccchhhHHHHHHHHHHHHHHhhhccc--cCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh-
Q 019054          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWE--KEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM-  291 (347)
Q Consensus       215 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al-  291 (347)
                      +++.+.-+-.+++.+.|+++|+|+--...+...  .+.+-.-+..-.......+|.--|+..-..|+.+.|+.+|..|- 
T Consensus       861 yy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D  940 (1416)
T KOG3617|consen  861 YYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD  940 (1416)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence            344444455566666677777665322211110  11111111111122233566667777777888888888887763 


Q ss_pred             --------------------hcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019054          292 --------------------RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL  327 (347)
Q Consensus       292 --------------------~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l  327 (347)
                                          .-...+--|-|.+|..|...|++.+|+..|.+|..+
T Consensus       941 ~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf  996 (1416)
T KOG3617|consen  941 YFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF  996 (1416)
T ss_pred             hhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence                                112345568899999999999999999998887654

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=89.29  E-value=3.5  Score=29.17  Aligned_cols=58  Identities=16%  Similarity=-0.001  Sum_probs=43.8

Q ss_pred             HHHHHHHcCChHHHHHHHHHHhhcCCCChh---HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019054          270 SSACKLKLGDLKGALLDTEFAMRDGDDNVK---ALFRQGQAYMALNDVDAAVESFEKALKL  327 (347)
Q Consensus       270 la~~~~~l~~~~~A~~~~~~al~~~p~~~~---a~~~~g~~~~~~~~~~~A~~~~~~al~l  327 (347)
                      .|.-++...+.++|+..+++||+..++...   ++-.+..+|...|+|++++++-.+-+++
T Consensus        12 ~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen   12 KGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455788899999999999998877654   4445667899999999988876554444

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=89.27  E-value=1.5  Score=30.99  Aligned_cols=36  Identities=17%  Similarity=0.150  Sum_probs=30.6

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhcc
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW  246 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~  246 (347)
                      .+..+...|..+-+.|+|++|+.+|.++|.++....
T Consensus         5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~l   40 (77)
T cd02683           5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVL   40 (77)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            566777788888899999999999999999887653

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=89.25  E-value=0.55  Score=25.37  Aligned_cols=24  Identities=17%  Similarity=-0.054  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHH
Q 019054          265 QIFTNSSACKLKLGDLKGALLDTE  288 (347)
Q Consensus       265 ~~~~nla~~~~~l~~~~~A~~~~~  288 (347)
                      .+..++|.++..+|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            467889999999999999998875

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=89.22  E-value=1.4  Score=39.16  Aligned_cols=62  Identities=19%  Similarity=0.075  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHh
Q 019054          231 ALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMA  310 (347)
Q Consensus       231 A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~  310 (347)
                      |..+|.+|+.                  +.|.....|+.+|.++...++.=.|+-+|-+++......+.|.-++...+..
T Consensus         1 A~~~Y~~A~~------------------l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIR------------------LLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHH------------------H-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHH------------------hCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            7889999999                  8999999999999999999999999999999997776678888888877777

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=88.89  E-value=0.82  Score=43.07  Aligned_cols=61  Identities=21%  Similarity=0.212  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHh--------hcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 019054          266 IFTNSSACKLKLGDLKGALLDTEFAM--------RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALK  326 (347)
Q Consensus       266 ~~~nla~~~~~l~~~~~A~~~~~~al--------~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~  326 (347)
                      .+..+..++.-+|+|..|+...+-.=        +.-+.+...+|..|-+|+++++|.+|++.|...+-
T Consensus       124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35567788888999999998765431        11234567899999999999999999999988764

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=88.85  E-value=5.2  Score=35.20  Aligned_cols=64  Identities=20%  Similarity=0.160  Sum_probs=50.6

Q ss_pred             HhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHH
Q 019054          260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN------VKALFRQGQAYMALNDVDAAVESFEK  323 (347)
Q Consensus       260 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~------~~a~~~~g~~~~~~~~~~~A~~~~~~  323 (347)
                      ......+...+|.-|+++|+|++|+..++.+.......      ...+..+-.|+..+|+.+..+...-+
T Consensus       174 ~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le  243 (247)
T PF11817_consen  174 NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE  243 (247)
T ss_pred             chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            34555677889999999999999999999997654322      56778888999999999888766443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=88.16  E-value=1.5  Score=38.85  Aligned_cols=73  Identities=18%  Similarity=0.182  Sum_probs=62.9

Q ss_pred             HcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC
Q 019054          217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD  296 (347)
Q Consensus       217 ~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~  296 (347)
                      +.=..+...++++.|...-++.+.                  +.|..+.-+.-+|.+|.++|.+.-|+.+++..++..|+
T Consensus       186 ~lk~~~~~e~~~~~al~~~~r~l~------------------l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~  247 (269)
T COG2912         186 NLKAALLRELQWELALRVAERLLD------------------LNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPD  247 (269)
T ss_pred             HHHHHHHHhhchHHHHHHHHHHHh------------------hCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCC
Confidence            333456778899999999999998                  88888888999999999999999999999999999999


Q ss_pred             ChhHHHHHHHH
Q 019054          297 NVKALFRQGQA  307 (347)
Q Consensus       297 ~~~a~~~~g~~  307 (347)
                      .+.+-.-+++.
T Consensus       248 ~~~a~~ir~~l  258 (269)
T COG2912         248 DPIAEMIRAQL  258 (269)
T ss_pred             chHHHHHHHHH
Confidence            98776665544

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=88.07  E-value=3.5  Score=35.32  Aligned_cols=61  Identities=16%  Similarity=0.058  Sum_probs=54.9

Q ss_pred             HHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 019054          273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG  333 (347)
Q Consensus       273 ~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~  333 (347)
                      -.++-+..++|+...+.-++.+|.+...-..+-+.|.-.|+|++|+.-++.+-+++|++..
T Consensus        10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~   70 (273)
T COG4455          10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV   70 (273)
T ss_pred             HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence            4556788999999999999999999988888889999999999999999999999998654

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=88.06  E-value=5.6  Score=37.17  Aligned_cols=85  Identities=12%  Similarity=0.038  Sum_probs=60.0

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhcccc-C-----CCChh-----hhhhHHhhHHHHHHHHHHHHHHcCCh
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEK-E-----GIDEG-----KSSSLRKTKSQIFTNSSACKLKLGDL  280 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~-~-----~~~~~-----~~~~~~~~~~~~~~nla~~~~~l~~~  280 (347)
                      +..+..++.++..+|+++.|.+..++||=.++.+... =     .....     -....+.....++........+.|.+
T Consensus        40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~  119 (360)
T PF04910_consen   40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCW  119 (360)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcH
Confidence            5667888888888999999999999888766632110 0     11110     00112334455666777888899999


Q ss_pred             HHHHHHHHHHhhcCCC
Q 019054          281 KGALLDTEFAMRDGDD  296 (347)
Q Consensus       281 ~~A~~~~~~al~~~p~  296 (347)
                      ..|+++|+-.+.+||.
T Consensus       120 rTAlE~~KlLlsLdp~  135 (360)
T PF04910_consen  120 RTALEWCKLLLSLDPD  135 (360)
T ss_pred             HHHHHHHHHHHhcCCC
Confidence            9999999999999998

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins

Probab=87.82  E-value=2.5  Score=33.76  Aligned_cols=106  Identities=19%  Similarity=0.155  Sum_probs=56.3

Q ss_pred             eeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCce--EEeccCCCCCCCCCCcccCCCCCCCc
Q 019054           18 GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFM--IQGGDISAGDGTGGESIYGLKFEDEN   95 (347)
Q Consensus        18 G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~--iq~G~~~~~~~~~~~~~~~~~~~~e~   95 (347)
                      -.++.+|..|.||+||+-|.+.-  -            |.+..+|-..-|..  +.-|++..           ....-||
T Consensus         8 ~~~~A~l~~d~AP~Tcaa~~~~L--P------------~~~~~~HarwSG~ei~~~l~~~~~-----------~~~~~EN   62 (147)
T PF12903_consen    8 VSFTARLLDDKAPKTCAAFWEAL--P------------LKGKVIHARWSGEEIWIPLPDFDP-----------FEPGREN   62 (147)
T ss_dssp             EEEEEEE-TTTSHHHHHHHHHH----------------EEEE-EE-SSSSSEEEEEEE--SS-----------S---S-S
T ss_pred             eEEEEEEcccCChHHHHHHHHhC--C------------CCCcEEEEEEECcEEEEECCCcCc-----------CCCCCCc
Confidence            36789999999999999999975  1            77778887776653  34455430           1123455


Q ss_pred             cccCCCCccEEEee--eC-CCC--CC-CceEEEecCC--------CCCCCCCCceeeEEEeChHHHHHHh
Q 019054           96 FELKHERKGMLSMA--NA-GPN--TN-GSQFFITTTR--------TSHLDGKHVVFGRVIKGMGVVRSIE  151 (347)
Q Consensus        96 ~~~~~~~~g~~~~~--~~-~~~--~~-~sqF~i~~~~--------~~~l~~~~~vfG~v~~g~~vl~~I~  151 (347)
                      ... +-.+|-|.+.  .. ..+  .. =+..-|..+.        ..++-|  .+|++|++|++-+.++-
T Consensus        63 ~T~-~P~pGdi~~~y~~~~~~~~~pg~~~e~~i~yg~g~~~f~~~~G~l~G--N~FatI~egle~la~~~  129 (147)
T PF12903_consen   63 HTV-TPIPGDILLYYEPGSAWGGNPGGISETEIFYGYGNLLFASKMGWLPG--NHFATITEGLEELAEAC  129 (147)
T ss_dssp             EES-S--TTEEEEE-----------E-EEEEEEE-SSS---EETTTEE--E--EEEEEEEESHHHHHHHH
T ss_pred             Ccc-cCCCCcEEEEecCCccccCCCcceEEEEEEEeeCceEecCCccccce--eEEEEEcCCHHHHHHHH
Confidence            433 3446777766  11 111  11 1444444432        223333  68999999998776553

The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=87.07  E-value=14  Score=33.03  Aligned_cols=83  Identities=29%  Similarity=0.194  Sum_probs=65.0

Q ss_pred             hHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHH----cCChHHHHHHHHHHhhcCCCChhHHH
Q 019054          227 DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK----LGDLKGALLDTEFAMRDGDDNVKALF  302 (347)
Q Consensus       227 ~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----l~~~~~A~~~~~~al~~~p~~~~a~~  302 (347)
                      +...|+..|.++-.                    .....+..++|.+|..    ..++.+|..+|.+|.+...  ..+++
T Consensus       170 ~~~~A~~~~~~aa~--------------------~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~  227 (292)
T COG0790         170 DDKKALYLYRKAAE--------------------LGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACY  227 (292)
T ss_pred             HHHhHHHHHHHHHH--------------------hcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHH
Confidence            34467777877755                    2367788999988866    4589999999999999886  88899


Q ss_pred             HHHHHHHhcC---------------CHHHHHHHHHHHHhhCCCCH
Q 019054          303 RQGQAYMALN---------------DVDAAVESFEKALKLEPNDG  332 (347)
Q Consensus       303 ~~g~~~~~~~---------------~~~~A~~~~~~al~l~P~~~  332 (347)
                      +++ ++...|               +...|...+.++....+...
T Consensus       228 ~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  271 (292)
T COG0790         228 NLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNA  271 (292)
T ss_pred             HHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhH
Confidence            999 665555               88889999999888765433

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=87.06  E-value=2.3  Score=29.82  Aligned_cols=37  Identities=24%  Similarity=0.308  Sum_probs=31.2

Q ss_pred             HhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhc
Q 019054          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC  245 (347)
Q Consensus       209 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~  245 (347)
                      ++.+..+...|...-..|+|++|+.+|.+|++++...
T Consensus         3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~   39 (75)
T cd02678           3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHA   39 (75)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            3467778888888889999999999999999977654

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=87.00  E-value=1.8  Score=38.19  Aligned_cols=66  Identities=17%  Similarity=0.219  Sum_probs=52.5

Q ss_pred             HHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 019054          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (347)
Q Consensus       215 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  292 (347)
                      ...+|..+++.|+|++|+..|+.+.....            .+.-......++..+..|+.++|+.+..+..+-+.+.
T Consensus       181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr------------~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLls  246 (247)
T PF11817_consen  181 SLEMAEEYFRLGDYDKALKLLEPAASSYR------------REGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELLS  246 (247)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHH------------hCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence            46789999999999999999999976321            1113455667888999999999999999998877653

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=86.98  E-value=1.8  Score=34.51  Aligned_cols=52  Identities=17%  Similarity=0.063  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHH
Q 019054          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDA  316 (347)
Q Consensus       265 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~  316 (347)
                      .....+|...+..|+|+.|+..++.++..+|++.++...++.+|.+++.-.+
T Consensus        71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~  122 (141)
T PF14863_consen   71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE  122 (141)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence            4566778888889999999999999999999999999999999988876554

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=86.65  E-value=8.9  Score=35.93  Aligned_cols=72  Identities=15%  Similarity=0.081  Sum_probs=57.0

Q ss_pred             hHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc--CC--CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 019054          262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMRD--GD--DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG  333 (347)
Q Consensus       262 ~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~--~p--~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~  333 (347)
                      ..+.+.+.+-.+|+.-+.|+.|-..-.++.--  ..  ..+..+|.+|.+..-+.+|..|.+++..|+...|++..
T Consensus       207 ~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~a  282 (493)
T KOG2581|consen  207 GQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAA  282 (493)
T ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhh
Confidence            34455666778899999999998877776522  12  23677889999999999999999999999999998554

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=86.64  E-value=9  Score=38.10  Aligned_cols=71  Identities=18%  Similarity=0.072  Sum_probs=40.6

Q ss_pred             HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC-C----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 019054          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD-N----VKALFRQGQAYMALNDVDAAVESFEKALKLEP  329 (347)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~-~----~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P  329 (347)
                      +.-..+.+-.|.|..+....-+++|-+.|++-+.+.+- +    +-.|.......+.-...+.|...|++|++..|
T Consensus       506 LriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp  581 (835)
T KOG2047|consen  506 LRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP  581 (835)
T ss_pred             HhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence            44444555566666666666666666666666665432 1    23344444455555566666666666666666

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=86.51  E-value=3.9  Score=29.00  Aligned_cols=67  Identities=19%  Similarity=0.062  Sum_probs=43.9

Q ss_pred             HhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccC---CCChhhhhhHHhhHHHHHHHHHHHHH
Q 019054          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKE---GIDEGKSSSLRKTKSQIFTNSSACKL  275 (347)
Q Consensus       209 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~nla~~~~  275 (347)
                      .+.|....+.|..+-..|+.++|+.+|+++++.+.+....+   ....+++.........+-.+++.+-.
T Consensus         5 ~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~v~~   74 (79)
T cd02679           5 YKQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVKT   74 (79)
T ss_pred             HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566777888888888999999999999999887654332   22334444444444444445544433

This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=86.39  E-value=11  Score=38.00  Aligned_cols=111  Identities=16%  Similarity=0.150  Sum_probs=81.2

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhcc-ccCC--CC-----hhhhhhHHhhHHHHHHHHHHHHHHcCChHHH
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW-EKEG--ID-----EGKSSSLRKTKSQIFTNSSACKLKLGDLKGA  283 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~-~~~~--~~-----~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A  283 (347)
                      +..+.-.|......+..+.|.+++.++++.+.... ..+.  ..     .+...........++...+.+.+-++++..|
T Consensus       301 ~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a  380 (608)
T PF10345_consen  301 ALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKA  380 (608)
T ss_pred             HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence            34445556677777777799999999999888765 1111  11     1112233445566777888999999999999


Q ss_pred             HHHHHHHhhcC---CC------ChhHHHHHHHHHHhcCCHHHHHHHHH
Q 019054          284 LLDTEFAMRDG---DD------NVKALFRQGQAYMALNDVDAAVESFE  322 (347)
Q Consensus       284 ~~~~~~al~~~---p~------~~~a~~~~g~~~~~~~~~~~A~~~~~  322 (347)
                      ....+.+....   |.      .+..+|..|..+...|+.+.|+..|.
T Consensus       381 ~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~  428 (608)
T PF10345_consen  381 TQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ  428 (608)
T ss_pred             HHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence            98888776542   22      37889999999999999999999998

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=86.31  E-value=4  Score=28.63  Aligned_cols=35  Identities=11%  Similarity=0.056  Sum_probs=29.8

Q ss_pred             hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhh
Q 019054          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDI  244 (347)
Q Consensus       210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~  244 (347)
                      +.+..+...|...-..|+|++|+..|..|++++..
T Consensus         4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~   38 (75)
T cd02680           4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN   38 (75)
T ss_pred             HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence            45677778888888999999999999999997754

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=86.26  E-value=14  Score=38.14  Aligned_cols=106  Identities=13%  Similarity=0.041  Sum_probs=79.4

Q ss_pred             HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (347)
Q Consensus       214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  293 (347)
                      -....+..+....+|.+|.....++...++.-         .........+....-.|.+....+++++|++.++.++..
T Consensus       417 Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~---------~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~  487 (894)
T COG2909         417 LVLLQAWLLASQHRLAEAETLIARLEHFLKAP---------MHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQ  487 (894)
T ss_pred             HHHHHHHHHHHccChHHHHHHHHHHHHHhCcC---------cccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            33455666667788888887777766633221         111134445566667888999999999999999999987


Q ss_pred             CCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 019054          294 GDDN-----VKALFRQGQAYMALNDVDAAVESFEKALKLE  328 (347)
Q Consensus       294 ~p~~-----~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~  328 (347)
                      =|.+     .-++...|.+..-.|++++|......+.++.
T Consensus       488 L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a  527 (894)
T COG2909         488 LPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMA  527 (894)
T ss_pred             cccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHH
Confidence            6654     5688889999999999999999999988884

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.25  E-value=11  Score=36.24  Aligned_cols=102  Identities=19%  Similarity=0.085  Sum_probs=76.4

Q ss_pred             cchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc---CCC---
Q 019054          223 YKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD---GDD---  296 (347)
Q Consensus       223 ~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~---~p~---  296 (347)
                      .-.|-|++|.++-.++|....+....+    ....-+.-.....+.++..|-+-.|++.+|+.....+.+.   .|.   
T Consensus       286 m~~gy~~~~~K~tDe~i~q~eklkq~d----~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~L  361 (629)
T KOG2300|consen  286 MPAGYFKKAQKYTDEAIKQTEKLKQAD----LMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLL  361 (629)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhccccc----chhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHH
Confidence            467889999999999988654432221    1222345566678889999999999999998877666543   233   


Q ss_pred             ----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 019054          297 ----NVKALFRQGQAYMALNDVDAAVESFEKALKLE  328 (347)
Q Consensus       297 ----~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~  328 (347)
                          .+..++.+|.--...+.|+.|...|..|.++-
T Consensus       362 lr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t  397 (629)
T KOG2300|consen  362 LRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLT  397 (629)
T ss_pred             HHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhh
Confidence                35678888888888999999999999999875

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=86.19  E-value=3.6  Score=36.84  Aligned_cols=54  Identities=19%  Similarity=0.170  Sum_probs=47.5

Q ss_pred             HHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 019054          270 SSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEK  323 (347)
Q Consensus       270 la~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~  323 (347)
                      -+.-....+++.+|...+..++...|.+..+...++.+|...|+.++|...+..
T Consensus       140 ~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~  193 (304)
T COG3118         140 EAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA  193 (304)
T ss_pred             HhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence            344556789999999999999999999999999999999999999988776653

>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.92  E-value=3.3  Score=29.10  Aligned_cols=36  Identities=19%  Similarity=0.245  Sum_probs=30.2

Q ss_pred             hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhc
Q 019054          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC  245 (347)
Q Consensus       210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~  245 (347)
                      ..|..+...|...-+.|+|++|+..|..+|+++...
T Consensus         4 ~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~   39 (75)
T cd02677           4 EQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKG   39 (75)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            456677777888888899999999999999987654

This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=85.68  E-value=13  Score=36.93  Aligned_cols=113  Identities=12%  Similarity=0.088  Sum_probs=78.6

Q ss_pred             HHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC
Q 019054          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (347)
Q Consensus       215 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~  294 (347)
                      +...|..|-..|+.+.|...+++|... ++             ..-...+..|++-|..-++..+++.|+...+.|+.+.
T Consensus       390 w~~faklYe~~~~l~~aRvifeka~~V-~y-------------~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP  455 (835)
T KOG2047|consen  390 WVEFAKLYENNGDLDDARVIFEKATKV-PY-------------KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVP  455 (835)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHhhcC-Cc-------------cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCC
Confidence            456677777788888888888888761 11             1344567788888888888888888888888887543


Q ss_pred             CC------------------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 019054          295 DD------------------NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (347)
Q Consensus       295 p~------------------~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~  341 (347)
                      ..                  +.+.|...+......|=++.....|++.+.|-=-.|++..+.+..
T Consensus       456 ~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmf  520 (835)
T KOG2047|consen  456 TNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMF  520 (835)
T ss_pred             CchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            22                  135566666666777777777777888877766666665555544

>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.61  E-value=2.8  Score=29.39  Aligned_cols=36  Identities=22%  Similarity=0.226  Sum_probs=30.7

Q ss_pred             hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhc
Q 019054          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC  245 (347)
Q Consensus       210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~  245 (347)
                      +.|..+...|...-..|+|++|+.+|..+|+++...
T Consensus         4 ~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~   39 (75)
T cd02684           4 EKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVPA   39 (75)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            466777888888889999999999999999987654

This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=85.43  E-value=5.2  Score=39.13  Aligned_cols=69  Identities=19%  Similarity=0.090  Sum_probs=60.5

Q ss_pred             HHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHH-HHhhCCCCHHHHHHH
Q 019054          270 SSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEK-ALKLEPNDGGIKKEL  338 (347)
Q Consensus       270 la~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~-al~l~P~~~~~~~~l  338 (347)
                      ++..+..++....+......++..+|++..++.+++.+....|..-.++..+.. +.+..|.+.++..-+
T Consensus        73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  142 (620)
T COG3914          73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHL  142 (620)
T ss_pred             HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhH
Confidence            688888899998999999999999999999999999999998877777766655 999999998877766

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=85.35  E-value=16  Score=36.78  Aligned_cols=118  Identities=15%  Similarity=0.100  Sum_probs=84.2

Q ss_pred             hHHHHHHcCcccc-chhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHY-KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (347)
Q Consensus       211 ~a~~~~~~g~~~~-~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~  289 (347)
                      .+.....+|..++ .-.+++.|..+.+|++.+...            ..+......+..-++.++.+.+... |+..+++
T Consensus        58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~------------~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~  124 (608)
T PF10345_consen   58 EARVRLRLASILLEETENLDLAETYLEKAILLCER------------HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDK  124 (608)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc------------cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHH
Confidence            5777888899888 678999999999999885421            1244455566667789998888877 9999999


Q ss_pred             HhhcCCC----ChhHHHHHHHH--HHhcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHH
Q 019054          290 AMRDGDD----NVKALFRQGQA--YMALNDVDAAVESFEKALKLE--PNDGGIKKELAVA  341 (347)
Q Consensus       290 al~~~p~----~~~a~~~~g~~--~~~~~~~~~A~~~~~~al~l~--P~~~~~~~~l~~~  341 (347)
                      +|+....    .+.-.+++-.+  +...+++..|++.++....+.  +.++.+...+...
T Consensus       125 ~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~  184 (608)
T PF10345_consen  125 AIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLS  184 (608)
T ss_pred             HHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHH
Confidence            9976544    34444444322  223379999999999998887  4566655444333

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=85.03  E-value=4.6  Score=34.13  Aligned_cols=54  Identities=13%  Similarity=0.047  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC----ChhHHHHHHHHHHhcCCHHHHH
Q 019054          264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD----NVKALFRQGQAYMALNDVDAAV  318 (347)
Q Consensus       264 ~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~----~~~a~~~~g~~~~~~~~~~~A~  318 (347)
                      +.+.+.+|..|. ..+.++|+..+.++|++.+.    |+..+.-++.+|..+++++.|-
T Consensus       141 ~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  141 AELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             HHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            455666666655 56777888888888776543    3677777888888888877763

>smart00745 MIT Microtubule Interacting and Trafficking molecule domain

Probab=84.96  E-value=3.9  Score=28.61  Aligned_cols=39  Identities=23%  Similarity=0.250  Sum_probs=31.1

Q ss_pred             hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhcccc
Q 019054          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEK  248 (347)
Q Consensus       210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~  248 (347)
                      +.|..+...|..+-+.|+|++|+.+|.+|++.+......
T Consensus         6 ~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~~~   44 (77)
T smart00745        6 SKAKELISKALKADEAGDYEEALELYKKAIEYLLEGIKV   44 (77)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcc
Confidence            456667777777778999999999999999988765433

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=84.43  E-value=3.3  Score=39.25  Aligned_cols=58  Identities=9%  Similarity=0.036  Sum_probs=47.6

Q ss_pred             HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .....|.-+|..|+|.++..+-.-..+                  ..| .+.+|.-+|.|.+..++|++|..++...
T Consensus       464 n~LaDAEyLysqgey~kc~~ys~WL~~------------------iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  464 NFLADAEYLYSQGEYHKCYLYSSWLTK------------------IAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL  521 (549)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHH------------------hCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence            345566777889999999887766666                  667 7889999999999999999999887554

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=84.34  E-value=6.3  Score=37.10  Aligned_cols=70  Identities=13%  Similarity=0.079  Sum_probs=48.8

Q ss_pred             cCChHHHHHHHHHHhhcCC-CC----------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054          277 LGDLKGALLDTEFAMRDGD-DN----------VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV  345 (347)
Q Consensus       277 l~~~~~A~~~~~~al~~~p-~~----------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  345 (347)
                      .|+|..|++.|++.-.+.. ..          .-.--.+..||..+++.+.|+....+++-++|....-+..-+.+.+.+
T Consensus       196 a~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~L  275 (569)
T PF15015_consen  196 AGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRL  275 (569)
T ss_pred             HHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHH
Confidence            4555666666655443332 11          123446889999999999999999999999998877666666666655


Q ss_pred             c
Q 019054          346 S  346 (347)
Q Consensus       346 ~  346 (347)
                      +
T Consensus       276 e  276 (569)
T PF15015_consen  276 E  276 (569)
T ss_pred             H
Confidence            4

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=84.30  E-value=5.1  Score=31.97  Aligned_cols=50  Identities=18%  Similarity=0.246  Sum_probs=40.8

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          297 NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       297 ~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      -......++......|+|.-|.+....++..+|+|.+++...+.+.+.++
T Consensus        69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg  118 (141)
T PF14863_consen   69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG  118 (141)
T ss_dssp             CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence            45666778888889999999999999999999999999999988877664

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=83.92  E-value=18  Score=31.98  Aligned_cols=113  Identities=15%  Similarity=0.101  Sum_probs=81.4

Q ss_pred             CcchhHHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHc-CC
Q 019054          201 TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL-GD  279 (347)
Q Consensus       201 ~~~~~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l-~~  279 (347)
                      ..+++...+...++....      ...-..|++.-+.+|+                  +.|.+..+|.-+-.|...+ .+
T Consensus        38 Yte~fr~~m~YfRAI~~~------~E~S~RAl~LT~d~i~------------------lNpAnYTVW~yRr~iL~~l~~d   93 (318)
T KOG0530|consen   38 YTEDFRDVMDYFRAIIAK------NEKSPRALQLTEDAIR------------------LNPANYTVWQYRRVILRHLMSD   93 (318)
T ss_pred             echhHHHHHHHHHHHHhc------cccCHHHHHHHHHHHH------------------hCcccchHHHHHHHHHHHhHHH
Confidence            344555555555554443      3445678888888888                  7788888887777777766 45


Q ss_pred             hHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHH-HHHHHHHHHHhhCCCCHHHHHH
Q 019054          280 LKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVD-AAVESFEKALKLEPNDGGIKKE  337 (347)
Q Consensus       280 ~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~-~A~~~~~~al~l~P~~~~~~~~  337 (347)
                      ..+-+++.+++++-+|.|.+.|..|-.+...+|+.. .-++..++++..+..|--+++.
T Consensus        94 L~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWsh  152 (318)
T KOG0530|consen   94 LNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSH  152 (318)
T ss_pred             HHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHH
Confidence            677788888888888888888888888888888877 7778888888877665554443

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=83.84  E-value=2.1  Score=26.63  Aligned_cols=26  Identities=23%  Similarity=0.323  Sum_probs=23.9

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054          268 TNSSACKLKLGDLKGALLDTEFAMRD  293 (347)
Q Consensus       268 ~nla~~~~~l~~~~~A~~~~~~al~~  293 (347)
                      +++|.+|.++|+++.|...+++++.-
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~~   28 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIEE   28 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence            57999999999999999999999953

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=83.48  E-value=2.1  Score=30.15  Aligned_cols=28  Identities=14%  Similarity=0.076  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 019054          265 QIFTNSSACKLKLGDLKGALLDTEFAMR  292 (347)
Q Consensus       265 ~~~~nla~~~~~l~~~~~A~~~~~~al~  292 (347)
                      .-+...|.-+-+.|+|++|+.+|..+++
T Consensus         7 i~~a~~Ave~D~~g~y~eA~~~Y~~aie   34 (76)
T cd02681           7 VQFARLAVQRDQEGRYSEAVFYYKEAAQ   34 (76)
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            3445555555566666666666665553

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=83.41  E-value=3.6  Score=43.87  Aligned_cols=106  Identities=18%  Similarity=0.187  Sum_probs=83.3

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+....+.|......+.+.+|.+ .-+++.++.-.          ...+.+....+|..++..+.+++++++|+..+.+|
T Consensus       931 ~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v----------~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka  999 (1236)
T KOG1839|consen  931 EAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNV----------MGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKA  999 (1236)
T ss_pred             hhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHh----------hhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccc
Confidence            45666777777777888888877 55555543311          11277888999999999999999999999999998


Q ss_pred             hhcC--------CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019054          291 MRDG--------DDNVKALFRQGQAYMALNDVDAAVESFEKALKL  327 (347)
Q Consensus       291 l~~~--------p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l  327 (347)
                      +-+.        |+...++-+++...+..++...|+..+.+++++
T Consensus      1000 ~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 1000 CIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred             eeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence            7442        445788999999999999999999999998877

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=83.24  E-value=5.4  Score=27.97  Aligned_cols=28  Identities=14%  Similarity=0.190  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054          264 SQIFTNSSACKLKLGDLKGALLDTEFAM  291 (347)
Q Consensus       264 ~~~~~nla~~~~~l~~~~~A~~~~~~al  291 (347)
                      +.-+..+|.-+-+.|++++|+.+|++++
T Consensus         6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aI   33 (75)
T cd02682           6 ARKYAINAVKAEKEGNAEDAITNYKKAI   33 (75)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            4455666666666677777766666654

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=83.08  E-value=3.6  Score=22.67  Aligned_cols=29  Identities=24%  Similarity=0.279  Sum_probs=17.5

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 019054          313 DVDAAVESFEKALKLEPNDGGIKKELAVA  341 (347)
Q Consensus       313 ~~~~A~~~~~~al~l~P~~~~~~~~l~~~  341 (347)
                      +++.|...|++++...|.+..++......
T Consensus         2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~   30 (33)
T smart00386        2 DIERARKIYERALEKFPKSVELWLKYAEF   30 (33)
T ss_pred             cHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            45566666666666666666665555443

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=82.97  E-value=4.5  Score=28.21  Aligned_cols=37  Identities=22%  Similarity=0.298  Sum_probs=29.6

Q ss_pred             hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhcc
Q 019054          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW  246 (347)
Q Consensus       210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~  246 (347)
                      +.+..+...|...-+.|+|++|+.+|..|++.+....
T Consensus         4 ~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~   40 (75)
T cd02656           4 QQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQAL   40 (75)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence            3566667777777788999999999999999876553

The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=82.92  E-value=2.8  Score=44.64  Aligned_cols=108  Identities=15%  Similarity=0.163  Sum_probs=84.7

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+..++.++..+.+.+++++|+..-.+|.-+-..+..          ...+.....|.|++...+..++...|+..+.++
T Consensus       972 ~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g----------~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra 1041 (1236)
T KOG1839|consen  972 VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLG----------KDSPNTKLAYGNLALYEFAVKNLSGALKSLNRA 1041 (1236)
T ss_pred             HHHHHHHHHHHHhhhcchHHHHHhcccceeeechhcc----------CCCHHHHHHhhHHHHHHHhccCccchhhhHHHH
Confidence            3566788889999999999999988877653322211          145667788999999999999999999999888


Q ss_pred             hhc--------CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 019054          291 MRD--------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE  328 (347)
Q Consensus       291 l~~--------~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~  328 (347)
                      +.+        .|.-+-...+++..+..+++++.|+++.+.|+.++
T Consensus      1042 ~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1042 LKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred             HHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            754        34445566788888899999999999999999865

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=82.69  E-value=22  Score=33.43  Aligned_cols=102  Identities=12%  Similarity=-0.004  Sum_probs=78.9

Q ss_pred             chhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCC--hHHHHHHHHHHhhcCCCChhHH
Q 019054          224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD--LKGALLDTEFAMRDGDDNVKAL  301 (347)
Q Consensus       224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~--~~~A~~~~~~al~~~p~~~~a~  301 (347)
                      +....++-+.+-..+|+                  ..|....+|+-+..+..+...  +..-++.|+++++.||.|-.+|
T Consensus        87 k~~~ld~eL~~~~~~L~------------------~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W  148 (421)
T KOG0529|consen   87 KQALLDEELKYVESALK------------------VNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAW  148 (421)
T ss_pred             HHHhhHHHHHHHHHHHH------------------hCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccch
Confidence            34466677777788888                  889999999999999987754  6889999999999999998887


Q ss_pred             HHHHHHHHhc-CC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 019054          302 FRQGQAYMAL-ND---VDAAVESFEKALKLEPNDGGIKKELAVAKK  343 (347)
Q Consensus       302 ~~~g~~~~~~-~~---~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  343 (347)
                      ..|=.+.... ..   ..+-++...+++.-++.|-.++..-..+.+
T Consensus       149 ~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~  194 (421)
T KOG0529|consen  149 HYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLS  194 (421)
T ss_pred             HHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHH
Confidence            6554444433 33   567788888888888888887776665544

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=82.56  E-value=6.7  Score=27.51  Aligned_cols=28  Identities=14%  Similarity=0.054  Sum_probs=16.7

Q ss_pred             hHHHHHHHHHHhhcCCCChhHHHHHHHH
Q 019054          280 LKGALLDTEFAMRDGDDNVKALFRQGQA  307 (347)
Q Consensus       280 ~~~A~~~~~~al~~~p~~~~a~~~~g~~  307 (347)
                      |.+|++.+.+++...|++.+....+..+
T Consensus        29 Y~~aIe~L~q~~~~~pD~~~k~~yr~ki   56 (75)
T cd02682          29 YKKAIEVLSQIVKNYPDSPTRLIYEQMI   56 (75)
T ss_pred             HHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence            5666666666766666665544444333

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=82.46  E-value=0.64  Score=42.42  Aligned_cols=80  Identities=14%  Similarity=0.018  Sum_probs=61.2

Q ss_pred             HcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC
Q 019054          217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD  296 (347)
Q Consensus       217 ~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~  296 (347)
                      +.+...++.+.|..|+..-..+++                  .++....+++.++..++.+.++++|+++...+....|+
T Consensus       280 n~~~~~lk~~~~~~a~~~~~~~~~------------------~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~  341 (372)
T KOG0546|consen  280 NLAAVGLKVKGRGGARFRTNEALR------------------DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPN  341 (372)
T ss_pred             chHHhcccccCCCcceeccccccc------------------cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcc
Confidence            345555666677777666666666                  67778899999999999999999999999999999999


Q ss_pred             ChhHHHHHHHHHHhcCCH
Q 019054          297 NVKALFRQGQAYMALNDV  314 (347)
Q Consensus       297 ~~~a~~~~g~~~~~~~~~  314 (347)
                      +....-.+..+-....++
T Consensus       342 d~~i~~~~~~~~~~~~~~  359 (372)
T KOG0546|consen  342 DKAIEEELENVRQKKKQY  359 (372)
T ss_pred             hHHHHHHHHHhhhHHHHH
Confidence            877666555554444443

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=82.10  E-value=17  Score=33.44  Aligned_cols=86  Identities=14%  Similarity=0.038  Sum_probs=64.0

Q ss_pred             hhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHH
Q 019054          225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQ  304 (347)
Q Consensus       225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~  304 (347)
                      +.-.+..+..|++||+                  .+|....++..+-.++.+..+.++...-+++++..+|.+...|..+
T Consensus        44 ~a~~E~klsilerAL~------------------~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~y  105 (321)
T PF08424_consen   44 RALAERKLSILERALK------------------HNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREY  105 (321)
T ss_pred             HHHHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence            3445667788999999                  6777777887777888888999999999999999999886554443


Q ss_pred             ---HHHHHhcCCHHHHHHHHHHHHhhC
Q 019054          305 ---GQAYMALNDVDAAVESFEKALKLE  328 (347)
Q Consensus       305 ---g~~~~~~~~~~~A~~~~~~al~l~  328 (347)
                         -+.....-.++.....|.+|++.-
T Consensus       106 L~~~q~~~~~f~v~~~~~~y~~~l~~L  132 (321)
T PF08424_consen  106 LDFRQSNFASFTVSDVRDVYEKCLRAL  132 (321)
T ss_pred             HHHHHHHhccCcHHHHHHHHHHHHHHH
Confidence               333333446778888888887653

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.86  E-value=18  Score=37.40  Aligned_cols=129  Identities=16%  Similarity=0.151  Sum_probs=75.9

Q ss_pred             HhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHH--HHcC--ChHHH-
Q 019054          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACK--LKLG--DLKGA-  283 (347)
Q Consensus       209 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~--~~l~--~~~~A-  283 (347)
                      ++....-.+.|-.+...|.|.+|++.|+.+|-.+.-+......+..+..++-.........|..-.  .+++  ..+.+ 
T Consensus       988 l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ 1067 (1202)
T KOG0292|consen  988 LSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQL 1067 (1202)
T ss_pred             HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHH
Confidence            444556677888899999999999999999986665544444443332222222111111111100  0111  23333 


Q ss_pred             -HHHHHHHhhcCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 019054          284 -LLDTEFAMRDGDDN-VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKE  337 (347)
Q Consensus       284 -~~~~~~al~~~p~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~  337 (347)
                       +..|=.-..+.|-. .-++..--.++++++++..|...-.+.+++.|..+.+.+.
T Consensus      1068 ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~ 1123 (1202)
T KOG0292|consen 1068 ELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQA 1123 (1202)
T ss_pred             HHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHH
Confidence             11221223455543 4455555567888999999999999999999976655443

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=80.14  E-value=18  Score=32.23  Aligned_cols=106  Identities=12%  Similarity=0.069  Sum_probs=69.0

Q ss_pred             HcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC
Q 019054          217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD  296 (347)
Q Consensus       217 ~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~  296 (347)
                      .+|+.+|..++|..-.....+.-.      ++...+.++...-......+|.---+.|..+++-.+--..|+++|.+...
T Consensus       150 KLgkl~fd~~e~~kl~KIlkqLh~------SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSA  223 (440)
T KOG1464|consen  150 KLGKLYFDRGEYTKLQKILKQLHQ------SCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSA  223 (440)
T ss_pred             hHhhhheeHHHHHHHHHHHHHHHH------HhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhcc
Confidence            478889998888765544443322      22222322222233345566666677888888888888888999977644


Q ss_pred             ChhHHH------HHHHHHHhcCCHHHHHHHHHHHHhhC
Q 019054          297 NVKALF------RQGQAYMALNDVDAAVESFEKALKLE  328 (347)
Q Consensus       297 ~~~a~~------~~g~~~~~~~~~~~A~~~~~~al~l~  328 (347)
                      -+..+.      --|..+..-|+|++|..+|-+|++-.
T Consensus       224 IPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNY  261 (440)
T KOG1464|consen  224 IPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNY  261 (440)
T ss_pred             CCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence            332221      12566788899999999999998864

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=80.07  E-value=8.3  Score=36.98  Aligned_cols=80  Identities=16%  Similarity=0.048  Sum_probs=48.1

Q ss_pred             cchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHH
Q 019054          223 YKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALF  302 (347)
Q Consensus       223 ~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~  302 (347)
                      ...|+.-.|-+....+|+                  ..|..+.....++.++..+|.|+.|..+..-+=.+=....++.-
T Consensus       300 ~~~gd~~aas~~~~~~lr------------------~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~  361 (831)
T PRK15180        300 LADGDIIAASQQLFAALR------------------NQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLR  361 (831)
T ss_pred             hhccCHHHHHHHHHHHHH------------------hCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHH
Confidence            345677777777777777                  55556666666778888888888887766554333223333333


Q ss_pred             HHHHHHHhcCCHHHHHHH
Q 019054          303 RQGQAYMALNDVDAAVES  320 (347)
Q Consensus       303 ~~g~~~~~~~~~~~A~~~  320 (347)
                      -+-.....++++++|...
T Consensus       362 ~~~r~~~~l~r~~~a~s~  379 (831)
T PRK15180        362 CRLRSLHGLARWREALST  379 (831)
T ss_pred             HHHHhhhchhhHHHHHHH
Confidence            344444555555555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	347
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		3e-80
1dyw_A	173	Biochemical And Structural Characterization Of A Di		2e-51
2wfj_A	179	Atomic Resolution Crystal Structure Of The Ppiase D		3e-50
2wfi_A	179	Atomic Resolution Crystal Structure Of The Ppiase D		3e-50
2gw2_A	198	Crystal Structure Of The Peptidyl-Prolyl Isomerase		1e-49
1c5f_A	177	Crystal Structure Of The Cyclophilin-Like Domain Fr		7e-48
2hqj_A	183	Cyclophilin From Leishmania Major Length = 183		2e-46
2he9_A	192	Structure Of The Peptidylprolyl Isomerase Domain Of		1e-44
1qoi_A	177	U4U6 SNRNP-Specific Cyclophilin Snucyp-20 Length =		1e-44
2plu_A	186	Crystal Structure Of Cryptosporidium Parvum Cycloph		9e-44
4fru_A	185	Crystal Structure Of Horse Wild-Type Cyclophilin B		2e-43
4frv_A	185	Crystal Structure Of Mutated Cyclophilin B That Cau		2e-43
2z6w_A	165	Crystal Structure Of Human Cyclophilin D In Complex		3e-43
3ich_A	188	Crystal Structure Of Cyclophilin B At 1.2 A Resolut		4e-43
1cyn_A	178	Cyclophilin B Complexed With [d-(Cholinylester)ser8		6e-43
3rdd_A	184	Human Cyclophilin A Complexed With An Inhibitor Len		7e-43
2xgy_B	173	Complex Of Rabbit Endogenous Lentivirus (Relik)caps		8e-43
2wlw_A	165	Structure Of The N-Terminal Capsid Domain Of Hiv-2		8e-43
4dgd_A	165	Trimcyp Cyclophilin Domain From Macaca Mulatta: H70		9e-43
1m9e_A	164	X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-		1e-42
2rma_A	165	Crystal Structures Of Cyclophilin A Complexed With		1e-42
2bit_X	165	Crystal Structure Of Human Cyclophilin D At 1.7 A R		1e-42
3r49_A	166	Human Cyclophilin D Complexed With Quinolin-8-Amine		1e-42
3qyu_A	164	Crystal Structure Of Human Cyclophilin D At 1.54 A		1e-42
3k0o_A	165	Room Temperature Structure Of Cypa Mutant Ser99thr		2e-42
3k0r_A	165	Cryogenic Structure Of Cypa Mutant Arg55lys Length		2e-42
1qng_A	170	Plasmodium Falciparum Cyclophilin Complexed With Cy		2e-42
1bck_A	165	Human Cyclophilin A Complexed With 2-Thr Cyclospori		4e-42
5cyh_A	164	Cyclophilin A Complexed With Dipeptide Gly-Pro Leng		4e-42
2x2a_A	165	Free Acetyl-Cypa Trigonal Form Length = 165		4e-42
2cfe_A	162	The 1.5 A Crystal Structure Of The Malassezia Sympo		4e-42
2ck1_A	172	The Structure Of Oxidised Cyclophilin A From S. Man		4e-42
2x2c_K	165	Acetyl-Cypa:cyclosporine Complex Length = 165		4e-42
2rmc_A	182	Crystal Structure Of Murine Cyclophilin C Complexed		7e-42
2alf_A	164	Crystal Structure Of Human Cypa Mutant K131a Length		8e-42
2x83_B	163	Evolutionary Basis Of Hiv Restriction By The Antire		1e-41
1qnh_A	170	Plasmodium Falciparum Cyclophilin (Double Mutant) C		1e-41
2esl_A	190	Human Cyclophilin C In Complex With Cyclosporin A L		2e-41
2x25_B	169	Free Acetyl-Cypa Orthorhombic Form Length = 169		2e-41
2r99_A	173	Crystal Structure Of Cyclophilin Abh-Like Domain Of		1e-40
1zmf_A	165	C Domain Of Human Cyclophilin-33(Hcyp33) Length = 1		2e-40
3pmp_A	164	Crystal Structure Of Cyclophilin A From Moniliophth		2e-40
1xo7_A	166	Crystal Structure Of Cyclophilin From Trypanosoma C		3e-40
3o7t_A	164	Crystal Structure Of Cyclophilin A From Moniliophth		6e-40
1ist_A	162	Crystal Structure Of Yeast Cyclophilin A, Cpr1 Leng		1e-39
1aws_A	164	Secypa Complexed With Hagpia (Pseudo-Symmetric Mono		1e-39
3uch_A	174	Crystal Structure Of A Hypotherical Peptidyl-Prolyl		1e-38
1z81_A	229	Crystal Structure Of Cyclophilin From Plasmodium Yo		2e-38
1h0p_A	182	Cyclophilin_5 From C. Elegans Length = 182		9e-37
2haq_A	172	Crystal Structure Of Cyclophilin A From Leishmania		2e-36
4i9y_A	167	Structure Of The C-terminal Domain Of Nup358 Length		2e-36
3bt8_A	172	Crystal Structure Of Mutant Cyclophilin (R147a) Fro		3e-36
3k2c_A	193	Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isom		4e-35
2c3b_A	172	The Crystal Structure Of Aspergillus Fumigatus Cycl		2e-32
2x7k_A	166	The Crystal Structure Of Ppil1 In Complex With Cycl		8e-28
1xwn_A	174	Solution Structure Of Cyclophilin Like 1(Ppil1) And		8e-28
2k7n_A	203	Solution Structure Of The Ppil1 Bound To A Fragment		9e-28
1xyh_A	161	Crystal Structure Of Recombinant Human Cyclophilin		1e-25
2oju_A	167	X-Ray Structure Of Complex Of Human Cyclophilin J W		1e-25
2a2n_A	176	Crystal Structure Of The Peptidylprolyl Isomerase D		3e-24
2b71_A	196	Plasmodium Yoelii Cyclophilin-Like Protein Length =		2e-23
2fu0_A	160	Plasmodium Falciparum Cyclophilin Pfe0505w Putative		8e-22
1zkc_A	197	Crystal Structure Of The Cyclophiln_ring Domain Of		7e-21
2poe_A	185	Crystal Structure Of Cryptosporidium Parvum Cycloph		9e-21
1w74_A	191	X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomer		6e-20
2hq6_A	185	Structure Of The Cyclophilin_cecyp16-like Domain Of		2e-16
3bo7_A	201	Crystal Structure Of Toxoplasma Gondii Peptidyl-Pro		4e-15
1qz2_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Compl		8e-11
3t1u_A	163	Crystal Structure Of The Complex Of Cyclophilin-a E		6e-09
1p5q_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Lengt		6e-09
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		3e-08
2nul_A	164	Peptidylprolyl Isomerase From E. Coli Length = 164		3e-07
2if4_A	338	Crystal Structure Of A Multi-Domain Immunophilin Fr		6e-07
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		9e-07
2ose_A	234	Crystal Structure Of The Mimivirus Cyclophilin Leng		9e-07
3s6m_A	167	The Structure Of A Peptidyl-Prolyl Cis-Trans Isomer		2e-06
1lop_A	164	Cyclophilin A Complexed With Succinyl-Ala-Pro-Ala-P		2e-06
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		2e-06
3rkv_A	162	C-Terminal Domain Of Protein C56c10.10, A Putative		2e-06
1clh_A	166	Three-Dimensional Solution Structure Of Escherichia		3e-06
1j2a_A	166	Structure Of E. Coli Cyclophilin B K163t Mutant Len		4e-06
3bkp_A	232	Crystal Structure Of The Toxoplasma Gondii Cyclophi		4e-06
1kt0_A	457	Structure Of The Large Fkbp-like Protein, Fkbp51, I		2e-05
1kt1_A	457	Structure Of The Large Fkbp-Like Protein, Fkbp51, I		5e-05
2dba_A	148	The Solution Structure Of The Tetratrico Peptide Re		8e-05
1na3_A	91	Design Of Stable Alpha-Helical Arrays From An Ideal		3e-04

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score =  295 bits (754), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 154/344 (44%), Positives = 207/344 (60%), Gaps = 3/344 (0%)
Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
           + PR F D+ IG E  GRI++E++ D++PKTAENFRALCTGEKGIGP TG PLH+KG  F
Sbjct: 14  SNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPF 73
Query: 62  HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HR+IK FMIQ            ESIYG KFEDENF  KH+++G+LSMANAG NTNGSQFF
Sbjct: 74  HRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFF 133
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGI 181
           ITT  T HLDGKHVVFG+VIKGMGV + +E+V     + P     I +CGE+ EG D GI
Sbjct: 134 ITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEV-KGEKPAKLCVIAECGELKEGDDWGI 192
Query: 182 SNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRY 241
                 GDS+PD+P D D    ++   +   + +K  GN  +K Q+++MA++KY K LRY
Sbjct: 193 FPKDGSGDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRY 252
Query: 242 LDICWEKEGIDEGKSSSLRKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKAL 301
           ++    +   ++   + L+        N  AC                A+     N KAL
Sbjct: 253 VE--GSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKAL 310
Query: 302 FRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV 345
           +R+ Q +  L + D A+   +KA ++ P D  I+ EL   K+K+
Sbjct: 311 YRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI 354

>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent Loop Cyclophilin From Caenorhabditis Elegans Length = 173

Iteration: 1
 Score =  199 bits (506), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 97/173 (56%), Positives = 125/173 (72%), Gaps = 2/173 (1%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M+R + F DI+IG +  GRI++E+Y+DV+PKTA NFRALCTGE GIG  +G PLH+KG +
Sbjct: 1   MSRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIG-KSGKPLHFKGSK 59
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I  FMIQ            ESIYG KF DENF+ KH   G+LSMANAGPNTNGSQF
Sbjct: 60  FHRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQF 119
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           F+ T +T  LDGKHVVFGRV++G+ VV+++E   +  +  P+ D  I DCG++
Sbjct: 120 FLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGS-QSGKPVKDCMIADCGQL 171

>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G In Complex With Cyclosporin A Length = 179

Iteration: 1
 Score =  195 bits (496), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 96/173 (55%), Positives = 117/173 (67%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           + RPRCF DI+I  +  GR++ E+++DV PKT ENFR LCTGEKG G +T  PLHYK   
Sbjct: 7   VQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCL 66
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRV+K FM+Q            ESIYG  FEDE+F +KH ++ +LSMAN G +TNGSQF
Sbjct: 67  FHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQF 126
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FITT  T HLDG HVVFG+VI G  VVR IE+  T     P A+V I  CGE+
Sbjct: 127 FITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179

>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G Length = 179

Iteration: 1
 Score =  195 bits (495), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 96/173 (55%), Positives = 117/173 (67%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           + RPRCF DI+I  +  GR++ E+++DV PKT ENFR LCTGEKG G +T  PLHYK   
Sbjct: 7   VQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSXL 66
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRV+K FM+Q            ESIYG  FEDE+F +KH ++ +LSMAN G +TNGSQF
Sbjct: 67  FHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQF 126
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FITT  T HLDG HVVFG+VI G  VVR IE+  T     P A+V I  CGE+
Sbjct: 127 FITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179

>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain Of Human Cyclophilin G Length = 198

Iteration: 1
 Score =  193 bits (490), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 96/173 (55%), Positives = 115/173 (66%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           + RPRCF DI+I  +  GR++ E+++DV PKT ENFR LCTGEKG G +T  PLHYK   
Sbjct: 24  VQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCL 83
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRV+K FM+Q            ESIYG  FEDE+F +KH    +LSMAN G +TNGSQF
Sbjct: 84  FHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNAAFLLSMANRGKDTNGSQF 143
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FITT  T HLDG HVVFG+VI G  VVR IE+  T     P A+V I  CGE+
Sbjct: 144 FITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 196

>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From Brugia Malayi Complexed With Cyclosporin A Length = 177

Iteration: 1
 Score =  187 bits (475), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 92/171 (53%), Positives = 114/171 (66%)
Query: 3   RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFH 62
           R R FLD++I   L GRI++E+YND+ P+T  NF  LCTG  G G  +G PLHYKG  FH
Sbjct: 6   RRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFH 65
Query: 63  RVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFI 122
           RVIK FMIQ            ESIYG  F+DE F +KH+   ++SMAN GPNTNGSQFFI
Sbjct: 66  RVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFI 125
Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           TTT   HL+  HVVFG+V+ G  VV  IE++ T   + P+ADV I +CGE+
Sbjct: 126 TTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 176

>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major Length = 183

Iteration: 1
 Score =  182 bits (462), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 96/176 (54%), Positives = 114/176 (64%), Gaps = 5/176 (2%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M  P+ F DISI  +  GRI++E+Y D +PKTAENFRALCTGEKG G  +G PLHYK   
Sbjct: 5   MTNPKVFFDISIDNKAAGRIVMELYADTVPKTAENFRALCTGEKGKG-RSGKPLHYKSSV 63
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELK---HERKGMLSMANAGPNTNG 117
           FHRVI  FMIQ            ESIYG  F DE+F  K   H   G LSMANAGPNTNG
Sbjct: 64  FHRVIPNFMIQGGDFTRGNGTGGESIYGTTFRDESFSGKAGRHTGLGCLSMANAGPNTNG 123
Query: 118 SQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           SQFFI T  T  LDGKHVVFGRVI G+ VV+ +E + +       + + ++DCGE+
Sbjct: 124 SQFFICTAATPWLDGKHVVFGRVIDGLDVVKKVERLGSSSGKTR-SRIVVSDCGEV 178

>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The Human Nk-Tumour Recognition Protein Length = 192

Iteration: 1
 Score =  177 bits (448), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 90/168 (53%), Positives = 109/168 (64%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P+C  DI I  E  GRI+ ++++D+ PKT +NF  LC+GEKG+G  TG  L YKG  FHR
Sbjct: 20  PQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHR 79
Query: 64  VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           V+K FMIQ            ESIYG  F+DENF LKH+R  +LSMAN G +TNGSQFFIT
Sbjct: 80  VVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFIT 139
Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCG 171
           T    HLDG HVVFG VI G  V+  IE++ T     P ADV + DCG
Sbjct: 140 TKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCG 187

>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20 Length = 177

Iteration: 1
 Score =  176 bits (447), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 90/170 (52%), Positives = 113/170 (66%), Gaps = 3/170 (1%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P  F D+SIG +  GR+ +E++ DV+PKTAENFR  CTGE       GVP+ YKG  FHR
Sbjct: 11  PVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFR---KDGVPIGYKGSTFHR 67
Query: 64  VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           VIK FMIQ             SIY   F DENF+L+H   G+LSMAN+GP+TNG QFFIT
Sbjct: 68  VIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFIT 127
Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
            ++   LDGKHVVFG++I G+ V+R IE+V TG N+ P   V I+ CGE+
Sbjct: 128 CSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177

>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120 Length = 186

Iteration: 1
 Score =  174 bits (440), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 94/170 (55%), Positives = 109/170 (64%), Gaps = 2/170 (1%)
Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
             P  + DISIG    GRI +E++ D +P TAENFRALCTGEKG+G  +G PL Y G  F
Sbjct: 18  GNPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMG-QSGKPLCYTGSFF 76
Query: 62  HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HR+I  FMIQ            ESIYG KF DENF   H+   +LSMANAGPNTNGSQFF
Sbjct: 77  HRIIPQFMIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFF 136
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCG 171
           ITT     LDGKHVVFG+V++GM VV+SIE   +  N  P   V IT  G
Sbjct: 137 ITTVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGS-QNGKPTKSVCITASG 185

>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B Length = 185

Iteration: 1
 Score =  173 bits (438), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 88/169 (52%), Positives = 112/169 (66%), Gaps = 8/169 (4%)
Query: 5   RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRV 64
           + + D+ IG E  GR+++ ++   +PKT +NF AL TGEKG G        YK  +FHRV
Sbjct: 14  KVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFG--------YKDSKFHRV 65
Query: 65  IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
           IK FMIQ            +SIYG +F DENF+LKH   G +SMANAG +TNGSQFFITT
Sbjct: 66  IKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITT 125
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
            +T+ LDGKHVVFG+V++GM VVR +E   T   D P+ DVTI DCG+I
Sbjct: 126 VKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIADCGKI 174

>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes Hyperelastosis Cutis In The American Quarter Horse Length = 185

Iteration: 1
 Score =  172 bits (437), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 88/169 (52%), Positives = 112/169 (66%), Gaps = 8/169 (4%)
Query: 5   RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRV 64
           + + D+ IG E  GR+++ ++   +PKT +NF AL TGEKG G        YK  +FHRV
Sbjct: 14  KVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFG--------YKDSKFHRV 65
Query: 65  IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
           IK FMIQ            +SIYG +F DENF+LKH   G +SMANAG +TNGSQFFITT
Sbjct: 66  IKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITT 125
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
            +T+ LDGKHVVFG+V++GM VVR +E   T   D P+ DVTI DCG+I
Sbjct: 126 VKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIADCGKI 174

>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With Cyclosporin A Length = 165

Iteration: 1
 Score =  172 bits (435), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 91/173 (52%), Positives = 109/173 (63%), Gaps = 9/173 (5%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M  P  +LD+    +  GR+++E+  DV+PKTAENFRALCTGEKG G        YKG  
Sbjct: 1   MGNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG--------YKGST 52
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRVI  FM Q            +SIYG +F DENF LKH   G+LSMANAGPNTNGSQF
Sbjct: 53  FHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQF 112
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FI T +T  LDGKHVVFG VI+GM VV+ IE   +         + ITDCG++
Sbjct: 113 FICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTS-KKIVITDCGQL 164

>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution Length = 188

Iteration: 1
 Score =  171 bits (434), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 88/169 (52%), Positives = 110/169 (65%), Gaps = 8/169 (4%)
Query: 5   RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRV 64
           + + D+ IG E  GR+I  ++   +PKT +NF AL TGEKG G        YK  +FHRV
Sbjct: 17  KVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFG--------YKNSKFHRV 68
Query: 65  IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
           IK FMIQ            +SIYG +F DENF+LKH   G +SMANAG +TNGSQFFITT
Sbjct: 69  IKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITT 128
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
            +T+ LDGKHVVFG+V++GM VVR +E   T   D P+ DV I DCG+I
Sbjct: 129 VKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKI 177

>pdb|1CYN|A Chain A, Cyclophilin B Complexed With [d-(Cholinylester)ser8]-Cyclosporin Length = 178

Iteration: 1
 Score =  171 bits (432), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 88/169 (52%), Positives = 110/169 (65%), Gaps = 8/169 (4%)
Query: 5   RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRV 64
           + + D+ IG E  GR+I  ++   +PKT +NF AL TGEKG G        YK  +FHRV
Sbjct: 7   KVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFG--------YKNSKFHRV 58
Query: 65  IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
           IK FMIQ            +SIYG +F DENF+LKH   G +SMANAG +TNGSQFFITT
Sbjct: 59  IKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITT 118
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
            +T+ LDGKHVVFG+V++GM VVR +E   T   D P+ DV I DCG+I
Sbjct: 119 VKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKI 167

>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor Length = 184

Iteration: 1
 Score =  171 bits (432), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 91/173 (52%), Positives = 110/173 (63%), Gaps = 9/173 (5%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M  P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YKG  
Sbjct: 20  MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 71
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I GFM Q            +SIYG KFEDENF LKH   G+LSMANAGPNTNGSQF
Sbjct: 72  FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 131
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FI T +T  LDGKHVVFG+V +GM +V ++E   +  N      +TI DCG++
Sbjct: 132 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 183

>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With Cyclophilin A Length = 173

Iteration: 1
 Score =  171 bits (432), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 91/173 (52%), Positives = 110/173 (63%), Gaps = 9/173 (5%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M  P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YKG  
Sbjct: 9   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 60
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I GFM Q            +SIYG KFEDENF LKH   G+LSMANAGPNTNGSQF
Sbjct: 61  FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 120
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FI T +T  LDGKHVVFG+V +GM +V ++E   +  N      +TI DCG++
Sbjct: 121 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 172

>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2 Length = 165

Iteration: 1
 Score =  170 bits (431), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 91/173 (52%), Positives = 110/173 (63%), Gaps = 9/173 (5%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M  P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YKG  
Sbjct: 1   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 52
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I GFM Q            +SIYG KFEDENF LKH   G+LSMANAGPNTNGSQF
Sbjct: 53  FHRIIPGFMCQGGNFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FI T +T  LDGKHVVFG+V +GM +V ++E   +  N      +TI DCG++
Sbjct: 113 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164

>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c Mutant Length = 165

Iteration: 1
 Score =  170 bits (431), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 91/173 (52%), Positives = 110/173 (63%), Gaps = 9/173 (5%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M  P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YKG  
Sbjct: 1   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 52
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I GFM Q            +SIYG KFEDENF LKH   G+LSMANAGPNTNGSQF
Sbjct: 53  FHRIIPGFMCQGGNFTHCNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FI T +T  LDGKHVVFG+V +GM +V ++E   +  N      +TI DCG++
Sbjct: 113 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164

>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N- Terminal Domain (1-146) M-Type H87a Complex. Length = 164

Iteration: 1
 Score =  170 bits (431), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 91/173 (52%), Positives = 110/173 (63%), Gaps = 9/173 (5%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M  P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YKG  
Sbjct: 1   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 52
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I GFM Q            +SIYG KFEDENF LKH   G+LSMANAGPNTNGSQF
Sbjct: 53  FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FI T +T  LDGKHVVFG+V +GM +V ++E   +  N      +TI DCG++
Sbjct: 113 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164

>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With Cyclosporin A And N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine Cyclosporin A Length = 165

Iteration: 1
 Score =  170 bits (431), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 91/173 (52%), Positives = 110/173 (63%), Gaps = 9/173 (5%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M  P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YKG  
Sbjct: 1   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 52
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I GFM Q            +SIYG KFEDENF LKH   G+LSMANAGPNTNGSQF
Sbjct: 53  FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FI T +T  LDGKHVVFG+V +GM +V ++E   +  N      +TI DCG++
Sbjct: 113 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164

>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A Resolution Length = 165

Iteration: 1
 Score =  170 bits (430), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 90/172 (52%), Positives = 108/172 (62%), Gaps = 9/172 (5%)
Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
             P  +LD+    +  GR+++E+  DV+PKTAENFRALCTGEKG G        YKG  F
Sbjct: 2   GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG--------YKGSTF 53
Query: 62  HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HRVI  FM Q            +SIYG +F DENF LKH   G+LSMANAGPNTNGSQFF
Sbjct: 54  HRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFF 113
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           I T +T  LDGKHVVFG VI+GM VV+ IE   +         + ITDCG++
Sbjct: 114 ICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTS-KKIVITDCGQL 164

>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine Length = 166

Iteration: 1
 Score =  170 bits (430), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 90/172 (52%), Positives = 108/172 (62%), Gaps = 9/172 (5%)
Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
             P  +LD+    +  GR+++E+  DV+PKTAENFRALCTGEKG G        YKG  F
Sbjct: 3   GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG--------YKGSTF 54
Query: 62  HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HRVI  FM Q            +SIYG +F DENF LKH   G+LSMANAGPNTNGSQFF
Sbjct: 55  HRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFF 114
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           I T +T  LDGKHVVFG VI+GM VV+ IE   +         + ITDCG++
Sbjct: 115 ICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTS-KKIVITDCGQL 165

>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A Resolution At Room Temperature Length = 164

Iteration: 1
 Score =  169 bits (429), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 90/172 (52%), Positives = 108/172 (62%), Gaps = 9/172 (5%)
Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
             P  +LD+    +  GR+++E+  DV+PKTAENFRALCTGEKG G        YKG  F
Sbjct: 1   GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG--------YKGSTF 52
Query: 62  HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HRVI  FM Q            +SIYG +F DENF LKH   G+LSMANAGPNTNGSQFF
Sbjct: 53  HRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFF 112
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           I T +T  LDGKHVVFG VI+GM VV+ IE   +         + ITDCG++
Sbjct: 113 ICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTS-KKIVITDCGQL 163

>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr Length = 165

Iteration: 1
 Score =  169 bits (429), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 90/173 (52%), Positives = 110/173 (63%), Gaps = 9/173 (5%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M  P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YKG  
Sbjct: 1   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 52
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I GFM Q            +SIYG KFEDENF LKH   G+L+MANAGPNTNGSQF
Sbjct: 53  FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILTMANAGPNTNGSQF 112
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FI T +T  LDGKHVVFG+V +GM +V ++E   +  N      +TI DCG++
Sbjct: 113 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164

>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys Length = 165

Iteration: 1
 Score =  169 bits (428), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 90/173 (52%), Positives = 110/173 (63%), Gaps = 9/173 (5%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M  P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YKG  
Sbjct: 1   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 52
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FH++I GFM Q            +SIYG KFEDENF LKH   G+LSMANAGPNTNGSQF
Sbjct: 53  FHKIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FI T +T  LDGKHVVFG+V +GM +V ++E   +  N      +TI DCG++
Sbjct: 113 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164

>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With Cyclosporin A Length = 170

Iteration: 1
 Score =  169 bits (428), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 94/172 (54%), Positives = 111/172 (64%), Gaps = 5/172 (2%)
Query: 3   RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFH 62
           R + F DISI     GRII E+++D+ P+T ENFRALCTGEK IG + G  LHYK   FH
Sbjct: 3   RSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEK-IG-SRGKNLHYKNSIFH 60
Query: 63  RVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFI 122
           R+I  FM Q            ESIYG  F DENF +KH++ G+LSMANAGPNTN SQFFI
Sbjct: 61  RIIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFI 120
Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIA-DVTITDCGEI 173
           T      LDGKHVVFG+VI+GM VVR +E    G     +   V ITDCGE+
Sbjct: 121 TLVPCPWLDGKHVVFGKVIEGMNVVREMEK--EGAKSGYVKRSVVITDCGEL 170

>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin Length = 165

Iteration: 1
 Score =  168 bits (426), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 90/170 (52%), Positives = 109/170 (64%), Gaps = 9/170 (5%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YKG  FHR
Sbjct: 4   PTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFHR 55
Query: 64  VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           +I GFM Q            +SIYG KFEDENF LKH   G+LSMANAGPNTNGSQFFI 
Sbjct: 56  IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 115
Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           T +T  LDGKHVVFG+V +GM +V ++E   +  N      +TI DCG++
Sbjct: 116 TAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164

>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro Length = 164

Iteration: 1
 Score =  168 bits (426), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 90/170 (52%), Positives = 109/170 (64%), Gaps = 9/170 (5%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YKG  FHR
Sbjct: 3   PTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFHR 54
Query: 64  VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           +I GFM Q            +SIYG KFEDENF LKH   G+LSMANAGPNTNGSQFFI 
Sbjct: 55  IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 114
Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           T +T  LDGKHVVFG+V +GM +V ++E   +  N      +TI DCG++
Sbjct: 115 TAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 163

>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form Length = 165

Iteration: 1
 Score =  168 bits (426), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 90/173 (52%), Positives = 109/173 (63%), Gaps = 9/173 (5%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M  P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YKG  
Sbjct: 1   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 52
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I GFM Q            +SIYG KFEDENF LKH   G+LSMANAGPNTNGSQF
Sbjct: 53  FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FI T +T  LDG HVVFG+V +GM +V ++E   +  N      +TI DCG++
Sbjct: 113 FICTAKTKWLDGXHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164

>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis Mala S 6 Allergen, A Member Of The Cyclophilin Pan- Allergen Family Length = 162

Iteration: 1
 Score =  168 bits (426), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 90/165 (54%), Positives = 106/165 (64%), Gaps = 9/165 (5%)
Query: 7   FLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIK 66
           F DI+      G I  ++++DV+PKTA NFRALCTGEKG G        Y G  FHRVI 
Sbjct: 5   FFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFG--------YAGSHFHRVIP 56
Query: 67  GFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTR 126
            FM+Q            +SIYG KF DENF+LKH + G+LSMANAGPNTNGSQFFITT  
Sbjct: 57  DFMLQGGDFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTVV 116
Query: 127 TSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCG 171
           TS LDGKHVVFG VI GM VV++IE   +G    P + + I  CG
Sbjct: 117 TSWLDGKHVVFGEVIDGMNVVKAIEAEGSGSGK-PRSRIEIAKCG 160

>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni Length = 172

Iteration: 1
 Score =  168 bits (425), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 90/171 (52%), Positives = 112/171 (65%), Gaps = 11/171 (6%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           PR F DI IG    GRI++E+ +D++P+TAENFRALCTGE+G G        Y    FHR
Sbjct: 11  PRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFG--------YHNCCFHR 62
Query: 64  VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           VI  FM Q            +SIYG KF+DENF+L+HE  G+LSMAN+GPNTNGSQFFI 
Sbjct: 63  VIPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFIC 122
Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIAD-VTITDCGEI 173
           TT+   LDGKHVVFGRV+ G  VV+ +E V  G     + + V I+ CGE+
Sbjct: 123 TTKCDWLDGKHVVFGRVVDGQNVVKKMESV--GSKSGKVKEPVIISRCGEL 171

>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex Length = 165

Iteration: 1
 Score =  168 bits (425), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 90/173 (52%), Positives = 109/173 (63%), Gaps = 9/173 (5%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M  P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YKG  
Sbjct: 1   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 52
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I GFM Q            +SIYG KFEDENF LKH   G+LSMANAGPNTNGSQF
Sbjct: 53  FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FI T +T  LDG HVVFG+V +GM +V ++E   +  N      +TI DCG++
Sbjct: 113 FICTAKTEWLDGXHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164

>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With Immunosuppressive Drug Cyclosporin A Length = 182

Iteration: 1
 Score =  167 bits (424), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 90/169 (53%), Positives = 110/169 (65%), Gaps = 8/169 (4%)
Query: 5   RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRV 64
           + F D+ IG +  GRI++ ++ +V+PKT ENF AL TGEKG G        YKG  FHRV
Sbjct: 9   KVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYG--------YKGSIFHRV 60
Query: 65  IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
           IK FMIQ             SIYG  F DENF+LKH   G +SMANAGP+TNGSQFFIT 
Sbjct: 61  IKDFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITL 120
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           T+ + LDGKHVVFG+V+ GM VV SIE   T  +D P+ D TI + G+I
Sbjct: 121 TKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVNSGKI 169

>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a Length = 164

Iteration: 1
 Score =  167 bits (423), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 90/170 (52%), Positives = 108/170 (63%), Gaps = 9/170 (5%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YKG  FHR
Sbjct: 3   PTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFHR 54
Query: 64  VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           +I GFM Q            +SIYG KFEDENF LKH   G+LSMANAGPNTNGSQFFI 
Sbjct: 55  IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 114
Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           T +T  LDGKHVVFG V +GM +V ++E   +  N      +TI DCG++
Sbjct: 115 TAKTKWLDGKHVVFGAVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 163

>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The Antiretroviral Trimcyp Length = 163

Iteration: 1
 Score =  166 bits (421), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 89/170 (52%), Positives = 109/170 (64%), Gaps = 9/170 (5%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YKG  FHR
Sbjct: 3   PTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFHR 54
Query: 64  VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           +I GFM Q            +SIYG KFEDENF LKH   G+LSMANAGPNTNGSQFFI 
Sbjct: 55  IIPGFMCQGGDFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 114
Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           T +T  LDGKHVVFG+V +GM +V +++   +  N      +TI DCG++
Sbjct: 115 TAKTEWLDGKHVVFGKVKEGMNIVEAMKRFGS-RNGKTSKKITIADCGQL 163

>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant) Complexed With Cyclosporin A Length = 170

Iteration: 1
 Score =  166 bits (421), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 93/171 (54%), Positives = 109/171 (63%), Gaps = 5/171 (2%)
Query: 3   RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFH 62
           R + F DISI     GRII E+++D+ P+T ENFRALCTGEK IG + G  LHYK   FH
Sbjct: 3   RSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEK-IG-SRGKNLHYKNSIFH 60
Query: 63  RVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFI 122
           R+I  FM Q            ESIYG  F DENF +KH++ G+LSMANAGPNTN SQF I
Sbjct: 61  RIIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFLI 120
Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIA-DVTITDCGE 172
           T      LDGKHVVFG+VI+GM VVR +E    G     +   V ITDCGE
Sbjct: 121 TLVPCPWLDGKHVVFGKVIEGMNVVREMEK--EGAKSGYVKRSVVITDCGE 169

>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A Length = 190

Iteration: 1
 Score =  166 bits (420), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 89/169 (52%), Positives = 110/169 (65%), Gaps = 8/169 (4%)
Query: 5   RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRV 64
           + F D+ IG +  GRI++ ++  V+PKT ENF AL TGEKG G        YKG +FHRV
Sbjct: 17  KVFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALATGEKGYG--------YKGSKFHRV 68
Query: 65  IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
           IK FMIQ             SIYG  F DENF+LKH   G +SMANAGP+TNGSQFFIT 
Sbjct: 69  IKDFMIQGGDITTGDGTGGVSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITL 128
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           T+ + LDGKHVVFG+VI GM VV SIE   T  +D P+ + +I + G+I
Sbjct: 129 TKPTWLDGKHVVFGKVIDGMTVVHSIELQATDGHDRPLTNCSIINSGKI 177

>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form Length = 169

Iteration: 1
 Score =  166 bits (419), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 89/170 (52%), Positives = 108/170 (63%), Gaps = 9/170 (5%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YKG  FHR
Sbjct: 8   PTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFHR 59
Query: 64  VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           +I GFM Q            +SIYG KFEDENF LKH   G+LSMANAGPNTNGSQFFI 
Sbjct: 60  IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 119
Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           T +T  LDG HVVFG+V +GM +V ++E   +  N      +TI DCG++
Sbjct: 120 TAKTKWLDGXHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 168

>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human Peptidylprolyl Isomerase E Isoform 1 Length = 173

Iteration: 1
 Score =  163 bits (413), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 87/171 (50%), Positives = 108/171 (63%), Gaps = 9/171 (5%)
Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
           + P+ ++DI IG +  GRI + + +DV+P TAENFR LCT EKG G        +KG  F
Sbjct: 10  SNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG--------FKGSSF 61
Query: 62  HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HR+I  FM Q            +SIYG KF+DENF LKH   G+LSMAN+GPNTNGSQFF
Sbjct: 62  HRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFF 121
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGE 172
           +T  +T  LDGKHVVFG V +G+ V+R IE   + D   P   V I DCGE
Sbjct: 122 LTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGK-PKQKVIIADCGE 171

>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33) Length = 165

Iteration: 1
 Score =  163 bits (412), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 87/171 (50%), Positives = 108/171 (63%), Gaps = 9/171 (5%)
Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
           + P+ ++DI IG +  GRI + + +DV+P TAENFR LCT EKG G        +KG  F
Sbjct: 2   SNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG--------FKGSSF 53
Query: 62  HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HR+I  FM Q            +SIYG KF+DENF LKH   G+LSMAN+GPNTNGSQFF
Sbjct: 54  HRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFF 113
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGE 172
           +T  +T  LDGKHVVFG V +G+ V+R IE   + D   P   V I DCGE
Sbjct: 114 LTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGK-PKQKVIIADCGE 163

>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa In Complex With Cyclosporin A Length = 164

Iteration: 1
 Score =  162 bits (410), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 86/172 (50%), Positives = 109/172 (63%), Gaps = 9/172 (5%)
Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
           A    F +ISI  + EGRI+ ++Y++ +PKTA+NFR L TG+ G G        YK   F
Sbjct: 1   AMANVFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG--------YKDSIF 52
Query: 62  HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HRVI  FM+Q            +SIYG KF DENF++KH + G+LSMANAG NTNGSQFF
Sbjct: 53  HRVIPQFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFF 112
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           ITT  TS LDGKHVVFG VI+G+ +VR +E   +       A + ITDCG +
Sbjct: 113 ITTVPTSWLDGKHVVFGEVIEGLDIVRKVEGKGSASGKTN-ATIKITDCGTV 163

>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi Length = 166

Iteration: 1
 Score =  162 bits (409), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 82/167 (49%), Positives = 110/167 (65%), Gaps = 9/167 (5%)
Query: 5   RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRV 64
           + + DI+IG E  GR+++ ++ + +PKT ENF+ L +GE G G        YKG  FHRV
Sbjct: 7   KVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFG--------YKGSIFHRV 58
Query: 65  IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
           I+ FMIQ            +SIYG +F+DEN ++KH   G +SMANAGPN+NGSQFF+TT
Sbjct: 59  IRNFMIQGGDFTNFDGTGGKSIYGTRFDDENLKIKH-FVGAVSMANAGPNSNGSQFFVTT 117
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCG 171
             T  LDG+HVVFG+V++GM VV+ +E+  TG ND P   V I DCG
Sbjct: 118 APTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCG 164

>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa Length = 164

Iteration: 1
 Score =  161 bits (407), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 85/168 (50%), Positives = 108/168 (64%), Gaps = 9/168 (5%)
Query: 6   CFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVI 65
            F +ISI  + EGRI+ ++Y++ +PKTA+NFR L TG+ G G        YK   FHRVI
Sbjct: 6   VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG--------YKDSIFHRVI 57
Query: 66  KGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTT 125
             FM+Q            +SIYG KF DENF++KH + G+LSMANAG NTNGSQFFITT 
Sbjct: 58  PQFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTV 117
Query: 126 RTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
            TS LDGKHVVFG VI+G+ +VR +E   +       A + ITDCG +
Sbjct: 118 PTSWLDGKHVVFGEVIEGLDIVRKVEGKGSASGKTN-ATIKITDCGTV 164

>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1 Length = 162

Iteration: 1
 Score =  160 bits (404), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 81/169 (47%), Positives = 106/169 (62%), Gaps = 9/169 (5%)
Query: 5   RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRV 64
           + + D+    +  GR++ ++YND++PKTAENFRALCTGEKG G        Y G  FHRV
Sbjct: 3   QVYFDVEADGQPIGRVVFKLYNDIVPKTAENFRALCTGEKGFG--------YAGSPFHRV 54
Query: 65  IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
           I  FM+Q            +SIYG KF DENF+  H+R G+LSMANAGPNTNGSQFFITT
Sbjct: 55  IPDFMLQGGDFTAGNGTGGKSIYGGKFPDENFKKHHDRPGLLSMANAGPNTNGSQFFITT 114
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
                LDGKHVVFG V+ G  +V+ +E + +  +    A + +   GE+
Sbjct: 115 VPCPWLDGKHVVFGEVVDGYDIVKKVESLGS-PSGATKARIVVAKSGEL 162

>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer) Length = 164

Iteration: 1
 Score =  160 bits (404), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 87/170 (51%), Positives = 105/170 (61%), Gaps = 9/170 (5%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YKG  FHR
Sbjct: 3   PTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFHR 54
Query: 64  VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           +I GF  Q            +SIYG KFEDENF LKH   G+LS ANAGPNTNGSQFFI 
Sbjct: 55  IIPGFXCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSXANAGPNTNGSQFFIC 114
Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           T +T  LDGKHVVFG+V +G  +V + E   +  N      +TI DCG++
Sbjct: 115 TAKTEWLDGKHVVFGKVKEGXNIVEAXERFGS-RNGKTSKKITIADCGQL 163

>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A Resolution Length = 174

Iteration: 1
 Score =  156 bits (395), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 85/171 (49%), Positives = 104/171 (60%), Gaps = 9/171 (5%)
Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
           + P+ + DI IG +  GRI   + +DV+P TAENFR LCT EKG G        +KG  F
Sbjct: 11  SNPQVYXDIKIGNKPAGRIQXLLRSDVVPXTAENFRCLCTHEKGFG--------FKGSSF 62
Query: 62  HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HR+I  F  Q            +SIYG KF+DENF LKH   G+LS AN+GPNTNGSQFF
Sbjct: 63  HRIIPQFXCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSXANSGPNTNGSQFF 122
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGE 172
           +T  +T  LDGKHVVFG V +G+ V+R IE   + D   P   V I DCGE
Sbjct: 123 LTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGK-PKQKVIIADCGE 172

>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii Length = 229

Iteration: 1
 Score =  155 bits (393), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 79/175 (45%), Positives = 114/175 (65%), Gaps = 6/175 (3%)
Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
           + P  F+DI++G    G+   E++ +++PKT+ENFR  CTGE  +     +P+ YK   F
Sbjct: 58  SNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKV---NNLPVGYKNTIF 114
Query: 62  HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HRVIK FMIQ             SIYG KF+DENF++KH+++G+LSMAN+GPNTNG QFF
Sbjct: 115 HRVIKEFMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFF 174
Query: 122 ITTTRTSHLDGKHVVFGRVI--KGMGVVRSIEHV-MTGDNDCPIADVTITDCGEI 173
           ITT +   LDGK+VVFGR+I    + +++ IE+V +T     P   + + +CGE+
Sbjct: 175 ITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL 229

>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans Length = 182

Iteration: 1
 Score =  150 bits (380), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 82/169 (48%), Positives = 99/169 (58%), Gaps = 8/169 (4%)
Query: 5   RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRV 64
           R + D+ IG +  GRI++ ++   +PKTA NF  L    KG G        Y G +FHRV
Sbjct: 8   RVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEG--------YPGSKFHRV 59
Query: 65  IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
           I  FMIQ             SIYG KF DENF+LKH   G LSMANAG +TNGSQFFITT
Sbjct: 60  IADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITT 119
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
            +T  LDG+HVVFG++++GM VVR IE       D P  DV I   G I
Sbjct: 120 VKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHI 168

>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania Donovani Length = 172

Iteration: 1
 Score =  149 bits (377), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 84/169 (49%), Positives = 99/169 (58%), Gaps = 9/169 (5%)
Query: 5   RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRV 64
           + + D+ I  E  GRI + ++    P T ENFR LCTGE G G        YK   FHRV
Sbjct: 13  KVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFG--------YKDSIFHRV 64
Query: 65  IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
           I+ FMIQ            +SIYG KF DEN  +KH   G LSMANAGPNTNGSQFFITT
Sbjct: 65  IQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKH-FVGALSMANAGPNTNGSQFFITT 123
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
             T  LDG+HVVFG+V+ GM VV  IE   T  +D P+  V I   GE+
Sbjct: 124 APTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172

>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358 Length = 167

Iteration: 1
 Score =  149 bits (376), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 82/173 (47%), Positives = 103/173 (59%), Gaps = 9/173 (5%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M  P  F D+    E  GRI +E++++++P+TAENFRALCTGEKG G        +K   
Sbjct: 4   MTNPVVFFDVCADGEPLGRITMELFSNIVPRTAENFRALCTGEKGFG--------FKNSI 55
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRVI  F+ Q            +SIYG KFEDENF++KH   G+LSMAN G NTN SQF
Sbjct: 56  FHRVIPDFVCQGGDITKHDGTGGQSIYGDKFEDENFDVKHTGPGLLSMANQGQNTNNSQF 115
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
            IT  +  HLD KHVVFG V  GM  V+ IE   +         +TIT+CG+I
Sbjct: 116 VITLKKAEHLDFKHVVFGFVKDGMDTVKKIESFGSPKGSV-CRRITITECGQI 167

>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From Leishmania Donovani Length = 172

Iteration: 1
 Score =  149 bits (375), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 84/169 (49%), Positives = 98/169 (57%), Gaps = 9/169 (5%)
Query: 5   RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRV 64
           + + D+ I  E  GRI + ++    P T ENFR LCTGE G G        YK   FHRV
Sbjct: 13  KVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFG--------YKDSIFHRV 64
Query: 65  IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
           I+ FMIQ            +SIYG KF DEN  +KH   G LSMANAGPNTNGSQFFITT
Sbjct: 65  IQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKH-FVGALSMANAGPNTNGSQFFITT 123
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
             T  LDG HVVFG+V+ GM VV  IE   T  +D P+  V I   GE+
Sbjct: 124 APTPWLDGAHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172

>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase From Encephalitozoon Cuniculi At 1.9 A Resolution Length = 193

Iteration: 1
 Score =  145 bits (365), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 79/171 (46%), Positives = 100/171 (58%), Gaps = 9/171 (5%)
Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
           A    + D+    E  GRI++++ +D++PKTA+NFR LC   KG G        YKG  F
Sbjct: 26  ASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEG--------YKGSTF 77
Query: 62  HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HR+I GFM+Q             SIYG KF DENFELKH ++G+LSMAN G +TNGSQFF
Sbjct: 78  HRIIPGFMVQGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFF 137
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIA-DVTITDCG 171
           IT  +T  LD KHVVFG V++GM VV  I    +          + I DCG
Sbjct: 138 ITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSESGQVKKGYRIEIRDCG 188

>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin Reveals 3d Domain Swapping Of A Central Element Length = 172

Iteration: 1
 Score =  136 bits (342), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 79/161 (49%), Positives = 96/161 (59%), Gaps = 15/161 (9%)
Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXXXXXX 77
           GRI+  +++  +PKTA+NFR LC    G G        Y+   FHR+I  FMIQ      
Sbjct: 22  GRIVFNLFDKDVPKTAKNFRELCKRPAGEG--------YRESTFHRIIPNFMIQGGDFTR 73
Query: 78  XXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVF 137
                  SIYG KF DENF  KH++KG+LSMANAGPNTNGSQFFITT  TS LDGKHVVF
Sbjct: 74  GNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVF 133
Query: 138 GRVI--KGMGVVRSIEHVMTGDNDCPIADVT---ITDCGEI 173
           G V   K   VV+ IE +  G +   +   T   I +CGE+
Sbjct: 134 GEVADEKSYSVVKEIEAL--GSSSGSVRSNTRPKIVNCGEL 172

>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With Cyclosporine A Suggests A Binding Mode For Skip Length = 166

Iteration: 1
 Score =  120 bits (302), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 71/165 (43%), Positives = 96/165 (58%), Gaps = 18/165 (10%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P  +L+ S+G+     I++E+Y    PKT +NF  L    +G         +Y G +FHR
Sbjct: 12  PNVYLETSMGI-----IVLELYWKHAPKTCKNFAELA--RRG---------YYNGTKFHR 55
Query: 64  VIKGFMIQXXXXXXXXXXXXESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFI 122
           +IK FMIQ             SIYG +FEDE + +LK    G+L+MANAGP+TNGSQFF+
Sbjct: 56  IIKDFMIQGGDPTGTGRGGA-SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFV 114
Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTI 167
           T   T  LDGKH +FGRV +G+G+V  +  V T   D P+ DV I
Sbjct: 115 TLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKI 159

>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And Insights Into Its Interaction With Skip Length = 174

Iteration: 1
 Score =  120 bits (302), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 71/165 (43%), Positives = 96/165 (58%), Gaps = 18/165 (10%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P  +L+ S+G+     I++E+Y    PKT +NF  L    +G         +Y G +FHR
Sbjct: 12  PNVYLETSMGI-----IVLELYWKHAPKTCKNFAELA--RRG---------YYNGTKFHR 55
Query: 64  VIKGFMIQXXXXXXXXXXXXESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFI 122
           +IK FMIQ             SIYG +FEDE + +LK    G+L+MANAGP+TNGSQFF+
Sbjct: 56  IIKDFMIQGGDPTGTGRGGA-SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFV 114
Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTI 167
           T   T  LDGKH +FGRV +G+G+V  +  V T   D P+ DV I
Sbjct: 115 TLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKI 159

>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of Skip Length = 203

Iteration: 1
 Score =  120 bits (302), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 71/165 (43%), Positives = 96/165 (58%), Gaps = 18/165 (10%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P  +L+ S+G+     I++E+Y    PKT +NF  L    +G         +Y G +FHR
Sbjct: 12  PNVYLETSMGI-----IVLELYWKHAPKTCKNFAELA--RRG---------YYNGTKFHR 55
Query: 64  VIKGFMIQXXXXXXXXXXXXESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFI 122
           +IK FMIQ             SIYG +FEDE + +LK    G+L+MANAGP+TNGSQFF+
Sbjct: 56  IIKDFMIQGGDPTGTGRGGA-SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFV 114
Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTI 167
           T   T  LDGKH +FGRV +G+G+V  +  V T   D P+ DV I
Sbjct: 115 TLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKI 159

>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J Length = 161

Iteration: 1
 Score =  113 bits (283), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/157 (43%), Positives = 88/157 (56%), Gaps = 19/157 (12%)
Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXXXXXX 77
           G I +E++ +  PKT ENF ALC              +Y G  FHR IKGFM+Q      
Sbjct: 10  GDIKIEVFCERTPKTCENFLALCASN-----------YYNGCIFHRNIKGFMVQTGDPTG 58
Query: 78  XXXXXXESIYGLKFEDENFE-LKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
                  SI+G KFEDE  E LKH  +G++SMAN GPNTNGSQFFIT  +  HLD K+ V
Sbjct: 59  TGRGG-NSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTV 117
Query: 137 FGRVIKGMGVVRSIEHVMTGD------NDCPIADVTI 167
           FG+VI G+  +  +E +   +      ND  I D+TI
Sbjct: 118 FGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITI 154

>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With Cyclosporin A Length = 167

Iteration: 1
 Score =  113 bits (283), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/157 (43%), Positives = 88/157 (56%), Gaps = 19/157 (12%)
Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXXXXXX 77
           G I +E++ +  PKT ENF ALC              +Y G  FHR IKGFM+Q      
Sbjct: 16  GDIKIEVFCERTPKTCENFLALCASN-----------YYNGCIFHRNIKGFMVQTGDPTG 64
Query: 78  XXXXXXESIYGLKFEDENFE-LKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
                  SI+G KFEDE  E LKH  +G++SMAN GPNTNGSQFFIT  +  HLD K+ V
Sbjct: 65  TGRGG-NSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTV 123
Query: 137 FGRVIKGMGVVRSIEHVMTGD------NDCPIADVTI 167
           FG+VI G+  +  +E +   +      ND  I D+TI
Sbjct: 124 FGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITI 160

>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain Of Human Ppwd1 Length = 176

Iteration: 1
 Score =  108 bits (271), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/168 (44%), Positives = 92/168 (54%), Gaps = 14/168 (8%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P+   D +I     G I  +++    PKT ENF   C   +          +Y G  FHR
Sbjct: 17  PKRVSDSAIIHTSMGDIHTKLFPVECPKTVENF---CVHSRN--------GYYNGHTFHR 65
Query: 64  VIKGFMIQXXXXXXXXXXXXESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFI 122
           +IKGFMIQ            ESI+G +FEDE +  L+H+R   LSMANAG NTNGSQFFI
Sbjct: 66  IIKGFMIQTGDPTGTGMGG-ESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFI 124
Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHV-MTGDNDCPIADVTITD 169
           T   T  LD KH VFGRV KGM VV+ I +V +    D P  DV+I +
Sbjct: 125 TVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIIN 172

>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein Length = 196

Iteration: 1
 Score =  106 bits (265), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/159 (45%), Positives = 83/159 (52%), Gaps = 14/159 (8%)
Query: 10  ISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFM 69
           I+I   L G   VE+Y    PKT  NF  LC  E G          Y    FHRVI  F+
Sbjct: 41  ITIYTNL-GDFEVELYWYHSPKTCLNFYTLC--EMGF---------YDNTIFHRVIPNFV 88
Query: 70  IQXXXXXXXXXXXXESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTS 128
           IQ            +SIYG  FEDE N ELKH   G+LSM+N GPNTN SQFFIT     
Sbjct: 89  IQGGDPTGTGKGG-KSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLP 147
Query: 129 HLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTI 167
           HLDGKH +F RV K M  + +I  V T   + PI D+ I
Sbjct: 148 HLDGKHTIFARVSKNMTCIENIASVQTTATNKPIFDLKI 186

>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative Cyclosporin- Binding Domain Length = 160

Iteration: 1
 Score =  100 bits (250), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 63/153 (41%), Positives = 81/153 (52%), Gaps = 13/153 (8%)
Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXXXXXX 77
           G I + ++     KT +NF               +  +Y    FHRVIK FM+Q      
Sbjct: 15  GDIHISLFYKECKKTVQNFSV-----------HSINGYYNNCIFHRVIKHFMVQTGDPSG 63
Query: 78  XXXXXXESIYGLKFEDENFE-LKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
                 ESI+G +FEDE F+ L H +  M+SMAN GPNTNGSQFFITT     LD KH V
Sbjct: 64  DGTGG-ESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTV 122
Query: 137 FGRVIKGMGVVRSIEHVMTGDNDCPIADVTITD 169
           FG+V +G  +V  IE V T   D P+ D+ I +
Sbjct: 123 FGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILN 155

>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B Length = 197

Iteration: 1
 Score = 98.2 bits (243), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 56/138 (40%), Positives = 79/138 (57%), Gaps = 13/138 (9%)
Query: 17  EGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXXXXX 76
           +G + +E++ D+ PKT ENF  LC              +Y G  FHR I+ F+IQ     
Sbjct: 28  KGDLNLELHCDLTPKTCENFIRLCKKH-----------YYDGTIFHRSIRNFVIQGGDPT 76
Query: 77  XXXXXXXESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHV 135
                  ES +G  F+DE    L H  +G+LSMAN+GPN+N SQFFIT    ++LD KH 
Sbjct: 77  GTGTGG-ESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHT 135
Query: 136 VFGRVIKGMGVVRSIEHV 153
           +FGRV+ G  V+ ++E+V
Sbjct: 136 IFGRVVGGFDVLTAMENV 153

>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660 Length = 185

Iteration: 1
 Score = 97.4 bits (241), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 59/157 (37%), Positives = 88/157 (56%), Gaps = 17/157 (10%)
Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXXXXXX 77
           G +  E++    PK  +NF AL               +YK   FH+ IKGF+IQ      
Sbjct: 26  GDLKFELFCSQCPKACKNFLALSASG-----------YYKNTIFHKNIKGFIIQGGDPTG 74
Query: 78  XXXXXXESIYGLKFEDENF-ELKHERKGMLSMANAG----PNTNGSQFFITTTRTSHLDG 132
                 ESIYG  F+DE + ELK++R+G+LSMA+ G    PNTNGSQFFIT +    L+G
Sbjct: 75  TGKGG-ESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNG 133
Query: 133 KHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITD 169
           ++V+FG++I G   + ++E+  +  +  PI ++ I D
Sbjct: 134 EYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKD 170

>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A, Ppia, Rv0009, From Mycobacterium Tuberculosis. Length = 191

Iteration: 1
 Score = 94.7 bits (234), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 63/157 (40%), Positives = 81/157 (51%), Gaps = 11/157 (7%)
Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPN--TGVP--LHYKGVRFHRVIKGFMIQXX 73
           G I + ++ +  PKT  NF  L  G K       +G P    Y G  FHRVI+GFMIQ  
Sbjct: 33  GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGG 92
Query: 74  XXXXXXXXXXESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDG 132
                           KF DE + EL+ ++  +L+MANAGP TNGSQFFIT  +T HL+ 
Sbjct: 93  DPTGTGRGGPG----YKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNR 148
Query: 133 KHVVFGRVI--KGMGVVRSIEHVMTGDNDCPIADVTI 167
           +H +FG VI  +   VV +I    T  ND P   V I
Sbjct: 149 RHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVI 185

>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The Serologically Defined Colon Cancer Antigen 10 From Homo Sapiens Length = 185

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 67/124 (54%), Gaps = 13/124 (10%)
Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXXXXXX 77
           G I +E+++   PK   NF  LC           +  +Y    FHRV+ GF++Q      
Sbjct: 34  GDIDIELWSKEAPKACRNFIQLC-----------LEAYYDNTIFHRVVPGFIVQGGDPTG 82
Query: 78  XXXXXXESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
                 ESIYG  F+DE +  L+  R+G+++MANAG + NGSQFF T  R   L+ KH +
Sbjct: 83  TGSGG-ESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTI 141
Query: 137 FGRV 140
           FG+V
Sbjct: 142 FGKV 145

>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl Cis-Trans Isomerase, 541.M00136 Length = 201

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 23/154 (14%)
Query: 14  VELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXX 73
           V  +G + +E++ D+ P+  ++F  LC  +           ++    FHR I+ FMIQ  
Sbjct: 12  VTTQGSLNIELHADMAPRACDSFLRLCAVK-----------YFDDTIFHRCIRNFMIQGG 60
Query: 74  XXXXXXXXXXESIY-----------GLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFF 121
                     + +            G  FEDE +  L H+  G+LSMAN G ++N S+FF
Sbjct: 61  RAELRQPSKKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFF 120
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMT 155
           IT     HL+ KH +FGRV+ G+ V+R  E + T
Sbjct: 121 ITFKSCEHLNNKHTIFGRVVGGLDVLRQWEKLET 154

>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With The C-Terminal Peptide Meevd Of Hsp90 Length = 336

Iteration: 1
 Score = 64.3 bits (155), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 73/148 (49%), Gaps = 9/148 (6%)
Query: 206 SWWMNAVDS------IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSL 259
           SW MN+ +       +K  G  ++K+  YK AL +Y+K + +L+        +  K+ +L
Sbjct: 135 SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQAL 194
Query: 260 RKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVE 319
           R        N + C                A+    +N K LFR+G+A++A+ND + A  
Sbjct: 195 RLAS---HLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARA 251
Query: 320 SFEKALKLEPNDGGIKKELAVAKKKVSR 347
            F+K L+L PN+   K +LAV ++++ R
Sbjct: 252 DFQKVLQLYPNNKAAKTQLAVCQQRIRR 279

>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme From Azotobacter Vinelandii With Sucafpfpna Peptide Length = 163

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 72/171 (42%), Gaps = 41/171 (23%)
Query: 17  EGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXXXXX 76
            G I ++++ D  P+TA NF                  HY G  FHRVI GFMIQ     
Sbjct: 8   HGTITLKLFADKAPETAANFEQYVKDG-----------HYDGTIFHRVIDGFMIQGGGFE 56
Query: 77  XXXXXXXESIYGLKFEDENFELKHE-------RKGMLSMA-NAGPNTNGSQFFITTTRTS 128
                      G+K +     +K+E       +K  ++MA    P++  +QFFI     +
Sbjct: 57  P----------GMKQKSTRAPIKNEANNGLSNKKYTIAMARTPDPHSASAQFFINVKDNA 106
Query: 129 HLDGK--------HVVFGRVIKGMGVVRSIEHVMTGD----NDCPIADVTI 167
            LD          + VFG V++G  VV  I+ V TG      D P+ DV I
Sbjct: 107 FLDHTAPTAHGWGYAVFGEVVEGTDVVDRIKSVATGSRAGHGDVPVDDVII 157

>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Length = 336

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 71/148 (47%), Gaps = 9/148 (6%)
Query: 206 SWWMNAVDS------IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSL 259
           SW  N+ +       +K  G  ++K+  YK AL +Y+K + +L+        +  K+ +L
Sbjct: 135 SWEXNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQAL 194
Query: 260 RKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVE 319
           R        N + C                A+    +N K L R+G+A++A+ND + A  
Sbjct: 195 RLAS---HLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARA 251
Query: 320 SFEKALKLEPNDGGIKKELAVAKKKVSR 347
            F+K L+L PN+   K +LAV ++++ R
Sbjct: 252 DFQKVLQLYPNNKAAKTQLAVCQQRIRR 279

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 63/135 (46%), Gaps = 18/135 (13%)
Query: 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTN 269
           N+ ++ K  GN +YK+ DY+ A+  Y+KAL           +D   +S+        + N
Sbjct: 7   NSAEAWKNLGNAYYKQGDYQKAIEYYQKALE----------LDPNNASA--------WYN 48
Query: 270 SSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP 329
                             + A+    +N KA +R+G AY    D   A+E ++KAL+L+P
Sbjct: 49  LGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDP 108
Query: 330 NDGGIKKELAVAKKK 344
           N+   K+ L  AK+K
Sbjct: 109 NNAKAKQNLGNAKQK 123

>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli Length = 164

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 70/166 (42%), Gaps = 31/166 (18%)
Query: 17  EGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXXXXX 76
            G I+++ ++D  P+T +NF   C   +G          Y    FHRVI GFMIQ     
Sbjct: 8   HGDIVIKTFDDKAPETVKNFLDYC--REGF---------YNNTIFHRVINGFMIQGGGFE 56
Query: 77  --XXXXXXXESIYGLKFEDENFELKHERKGMLSMANA-GPNTNGSQFFITTTRTSHLDGK 133
                    E I      + N  LK+ R G L+MA    P++  +QFFI       L+  
Sbjct: 57  PGMKQKATKEPIK----NEANNGLKNTR-GTLAMARTQAPHSATAQFFINVVDNDFLNFS 111
Query: 134 --------HVVFGRVIKGMGVVRSIEHVMTG----DNDCPIADVTI 167
                   + VF  V+ GM VV  I+ V TG      D P  DV I
Sbjct: 112 GESLQGWGYCVFAEVVDGMDVVDKIKGVATGRSGMHQDVPKEDVII 157

>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From Arabidopsis Thaliana Length = 338

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 66/132 (50%), Gaps = 5/132 (3%)
Query: 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYL--DICWEKEGIDEGKSSSLRKTKSQI 266
           + A D  K+ GN  +K++  + A+++Y  A+ Y+  D  ++  G  +  + ++   K+  
Sbjct: 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAV---KNPC 232
Query: 267 FTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALK 326
             N +AC                 + + + N KALFR+G+A   L  +D+A + F KA K
Sbjct: 233 HLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292
Query: 327 LEPNDGGIKKEL 338
             P+D  I++EL
Sbjct: 293 YAPDDKAIRREL 304

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 18/135 (13%)
Query: 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTN 269
           N+ ++    GN +YK+ DY  A+  Y+KAL                   L    ++ + N
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALE------------------LDPNNAEAWYN 48
Query: 270 SSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP 329
                             + A+    +N +A +  G AY    D D A+E ++KAL+L+P
Sbjct: 49  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 108
Query: 330 NDGGIKKELAVAKKK 344
           N+   K+ L  AK+K
Sbjct: 109 NNAEAKQNLGNAKQK 123

>pdb|2OSE|A Chain A, Crystal Structure Of The Mimivirus Cyclophilin Length = 234

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 79/194 (40%), Gaps = 30/194 (15%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGE------KGIGP---NTGVPL 54
           PR ++DI +  E+ GR+ ++++ D  P   ENF  L  G+       G G    N  +  
Sbjct: 15  PRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINR 74
Query: 55  HYKGVRFHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDE-------NFELKHERKGMLS 107
            Y+G +FH V+    I              ++Y     DE       ++   HE KG+LS
Sbjct: 75  TYEGCKFHNVLHNNYIVSGDIYNSNGSSAGTVYC----DEPIPPVFGDYFYPHESKGLLS 130
Query: 108 MA----NAGPNTNGSQFFITT--TRTSH----LDGKHVVFGRVIKGMGVVRSIEHVMTGD 157
           +      +G     S F IT    R S+    LD   VV G+V  G+ V+  I  ++   
Sbjct: 131 LVPYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSMIKPY 190
Query: 158 NDCPIADVTITDCG 171
                   +I  CG
Sbjct: 191 AGRKYPTFSIGKCG 204

>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Length = 167

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 71/171 (41%), Gaps = 41/171 (23%)
Query: 17  EGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXXXXX 76
            G I +E+     PKT ENF  L   +KG         HY G  FHRVI GFMIQ     
Sbjct: 12  HGVIKLELDEAKAPKTVENF--LNYVKKG---------HYDGTIFHRVINGFMIQGGGFE 60
Query: 77  XXXXXXXESIYGLKFEDENFELKHERKGML-------SMANAG-PNTNGSQFFITTTRTS 128
                      GLK +  +  + +E    L       +MA    P++  +QFFI      
Sbjct: 61  P----------GLKQKPTDAPIANEANNGLKNDTYTIAMARTNDPHSATAQFFINVNDNE 110
Query: 129 HLDGK--------HVVFGRVIKGMGVVRSIEHVMTGD----NDCPIADVTI 167
            L+          + VFG+V++G  +V  I+ V TG      D P  DV I
Sbjct: 111 FLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVPNDDVVI 161

>pdb|1LOP|A Chain A, Cyclophilin A Complexed With Succinyl-Ala-Pro-Ala-P-Nitroanilide Length = 164

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 69/165 (41%), Gaps = 31/165 (18%)
Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXXXXX- 76
           G I+++ ++D  P+T +NF   C   +G          Y    FHRVI GFMIQ      
Sbjct: 9   GDIVIKTFDDKAPETVKNFLDYC--REGF---------YNNTIFHRVINGFMIQGGGFEP 57
Query: 77  -XXXXXXXESIYGLKFEDENFELKHERKGMLSMANA-GPNTNGSQFFITTTRTSHLDGK- 133
                   E I      + N  LK+ R G L+MA    P++  +QFFI       L+   
Sbjct: 58  GMKQKATKEPIK----NEANNGLKNTR-GTLAMARTQAPHSATAQFFINVVDNDFLNFSG 112
Query: 134 -------HVVFGRVIKGMGVVRSIEHVMTG----DNDCPIADVTI 167
                  + VF  V+ GM  V  I+ V TG      D P  DV I
Sbjct: 113 ESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVII 157

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTN 269
           N+ ++    GN +YK+ DY  A+  Y+KAL                   L    ++ + N
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALE------------------LYPNNAEAWYN 48
Query: 270 SSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP 329
                             + A+    +N +A +  G AY    D D A+E ++KAL+L P
Sbjct: 49  LGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYP 108
Query: 330 NDGGIKKELAVAKKK 344
           N+   K+ L  AK+K
Sbjct: 109 NNAEAKQNLGNAKQK 123

>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative Peptidylprolyl Isomerase, From Caenorhabditis Elegans Length = 162

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 59/126 (46%)
Query: 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFT 268
           + +V++++  GNE + ++DYK A+  YR AL  LD    +E   E +   L +    ++ 
Sbjct: 8   LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYA 67
Query: 269 NSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE 328
           N S C             +   ++  + N KALFR+ +A +A   +D A E  +  L+  
Sbjct: 68  NMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127
Query: 329 PNDGGI 334
           P    +
Sbjct: 128 PAAASV 133

>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli Periplasmic Cyclophilin Length = 166

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 73/167 (43%), Gaps = 24/167 (14%)
Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXXXXXX 77
           G I +E+     P + +NF            N+G    Y    FHRVI GFMIQ      
Sbjct: 14  GNIELELDKQKAPVSVQNFVDYV--------NSGF---YNNTTFHRVIPGFMIQGGGFTE 62
Query: 78  XXXXXXESIYGLKFEDENFELKHERKGMLSMA-NAGPNTNGSQFFITTTRTSHLD-GK-- 133
                  +   +K E +N  L++ R G ++MA  A  ++  SQFFI     + LD G+  
Sbjct: 63  QMQQKKPNP-PIKNEADN-GLRNTR-GTIAMARTADKDSATSQFFINVADNAFLDHGQRD 119
Query: 134 --HVVFGRVIKGMGVVRSIEHVMTGD----NDCPIADVTITDCGEIP 174
             + VFG+V+KGM V   I  V T D     + P   V I     +P
Sbjct: 120 FGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAKVLP 166

>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Length = 166

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 73/167 (43%), Gaps = 24/167 (14%)
Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXXXXXX 77
           G I +E+     P + +NF            N+G    Y    FHRVI GFMIQ      
Sbjct: 14  GNIELELDKQKAPVSVQNFVDYV--------NSGF---YNNTTFHRVIPGFMIQGGGFTE 62
Query: 78  XXXXXXESIYGLKFEDENFELKHERKGMLSMA-NAGPNTNGSQFFITTTRTSHLD-GK-- 133
                  +   +K E +N  L++ R G ++MA  A  ++  SQFFI     + LD G+  
Sbjct: 63  QMQQKKPNP-PIKNEADN-GLRNTR-GTIAMARTADKDSATSQFFINVADNAFLDHGQRD 119
Query: 134 --HVVFGRVIKGMGVVRSIEHVMTGD----NDCPIADVTITDCGEIP 174
             + VFG+V+KGM V   I  V T D     + P   V I     +P
Sbjct: 120 FGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSATVLP 166

>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin, 49.m03261 Length = 232

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 27/139 (19%)
Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXXXXXX 77
           G + VE++    P    NF  LC           +  +Y    FHRV+K F++Q      
Sbjct: 31  GDLDVELWARECPLACRNFVQLC-----------LEGYYVNTIFHRVVKDFIVQGGDPTG 79
Query: 78  XXXXXXESIY-GLKFEDENF-ELKHERKGMLSMANAGPN--------------TNGSQFF 121
                 ++ + G  F+ E    LK   +G++ +AN G +              TNG+QFF
Sbjct: 80  TGRGGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFF 139
Query: 122 ITTTRTSHLDGKHVVFGRV 140
           IT  R   L+  + +FG+V
Sbjct: 140 ITLARADVLNNAYTLFGKV 158

>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/146 (22%), Positives = 68/146 (46%), Gaps = 9/146 (6%)
Query: 206 SWWMNAVDS------IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSL 259
           SW M+  +       +K  G  ++K   Y  A+ +Y K + +L++ +   G+ E +S + 
Sbjct: 256 SWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEY---GLSEKESKAS 312
Query: 260 RKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVE 319
                  F N + C              + A+     N K L+R+G+A + +N+ ++A  
Sbjct: 313 ESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKG 372
Query: 320 SFEKALKLEPNDGGIKKELAVAKKKV 345
            FEK L++ P +   + ++++ +KK 
Sbjct: 373 DFEKVLEVNPQNKAARLQISMCQKKA 398

>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/146 (22%), Positives = 67/146 (45%), Gaps = 9/146 (6%)
Query: 206 SWWMNAVDS------IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSL 259
           SW M+  +       +K  G  ++K   Y  A+ +Y K + +L++ +   G+ E +S + 
Sbjct: 256 SWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEY---GLSEKESKAS 312
Query: 260 RKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVE 319
                  F N + C              + A+     N K L+R+G+A + +N+ ++A  
Sbjct: 313 ESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKG 372
Query: 320 SFEKALKLEPNDGGIKKELAVAKKKV 345
            FEK L++ P +   + ++ + +KK 
Sbjct: 373 DFEKVLEVNPQNKAARLQIFMCQKKA 398

>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 15/130 (11%)
Query: 202 PNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRK 261
           P   +   ++V+ ++  GNE +K  DY  AL  Y +AL          G+D     +  +
Sbjct: 18  PRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQAL----------GLD-----ATPQ 62
Query: 262 TKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESF 321
            ++ +  N +AC                A+     +VKAL+R+ QA   L  +D AV   
Sbjct: 63  DQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDL 122
Query: 322 EKALKLEPND 331
           ++ + LEP +
Sbjct: 123 QRCVSLEPKN 132

>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344
           +N +A +  G AY    D D A+E ++KAL+L+PN+   K+ L  AK+K
Sbjct: 41  NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 89

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	347
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	0.0
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	1e-124
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	1e-124
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	1e-123
2igv_A	173	Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1	1e-117
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	1e-117
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	1e-116
1qng_A	170	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	1e-114
1z81_A	229	Cyclophilin; structural genomics, structural genom	1e-112
3ich_A	188	Peptidyl-prolyl CIS-trans isomerase B; beta sandwi	1e-112
2haq_A	172	Cyclophilin; rotamase, proline, isomerase, CIS-tra	1e-110
2ose_A	234	Probable peptidyl-prolyl CIS-trans isomerase; cycl	1e-109
2z6w_A	165	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	1e-108
3k2c_A	193	Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH,	1e-108
2cmt_A	172	Peptidyl-prolyl CIS-trans isomerase E; rotamase ac	1e-108
2r99_A	173	Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i	1e-108
3pmp_A	164	Cyclophilin A; peptidyl prolyl isomerase, isomeras	1e-107
3rdd_A	184	Peptidyl-prolyl CIS-trans isomerase A; beta barrel	1e-107
2c3b_A	172	Ppiase, cyclophilin; isomerase, 3D domain swapping	1e-104
2k7n_A	203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	1e-91
2fu0_A	160	Cyclophilin, putative; PFE0505W, cyclosporin-bindi	6e-80
2a2n_A	176	Peptidylprolyl isomerase domain and WD repeat CON;	4e-78
2x7k_A	166	Peptidyl-prolyl CIS-trans isomerase-like 1; isomer	2e-76
2b71_A	196	Cyclophilin-like protein; structural genomics, str	3e-75
3bo7_A	201	Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;	2e-71
2poe_A	185	Cyclophilin-like protein, putative; cryptosporidiu	2e-71
2ok3_A	161	Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b	8e-70
2hq6_A	185	Serologically defined colon cancer antigen 10; pro	1e-67
1zkc_A	197	Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr	5e-67
1w74_A	191	Peptidyl-prolyl CIS-trans isomerase A; cyclophilin	8e-66
3bkp_A	232	Cyclophilin; malaria, isomerase, structural GENO s	1e-58
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	1e-46
3s6m_A	167	Peptidyl-prolyl CIS-trans isomerase; seattle struc	3e-46
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	2e-45
1v9t_A	166	Cyclophilin B; beta barrel, isomerase-isomerase in	4e-45
1lop_A	164	Cyclophilin A; rotamase, isomerase-isomerase inhib	5e-45
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	5e-44
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	4e-43
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	2e-35
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	1e-33
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	3e-28
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	2e-27
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	1e-25
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	2e-25
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	2e-24
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	3e-24
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	4e-24
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	8e-24
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	3e-22
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	1e-19
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	2e-19
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-17
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-13
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-13
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-11
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-07
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	7e-04
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	3e-17
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-17
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-14
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-13
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-11
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-06
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	5e-17
2l6j_A	111	TPR repeat-containing protein associated with HSP;	2e-14
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-13
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-09
2gw1_A	514	Mitochondrial precursor proteins import receptor;	9e-08
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-06
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-13
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-10
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-08
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	9e-13
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	7e-12
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	6e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-04
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-11
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-11
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-08
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-06
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-11
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	9e-07
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	9e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	9e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	8e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-04
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	3e-09
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-04
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	5e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-09
3u4t_A	272	TPR repeat-containing protein; structural genomics	7e-09
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-07
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-04
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	6e-09
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	2e-06
2kat_A	115	Uncharacterized protein; NESG, structure, structur	6e-09
2kat_A	115	Uncharacterized protein; NESG, structure, structur	9e-05
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-08
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	7e-04
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-08
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	3e-06
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	4e-08
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	5e-05
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	9e-05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	4e-08
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	6e-06
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	6e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	9e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-06
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	9e-08
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	2e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	7e-07
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	6e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	7e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	7e-06
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	7e-07
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	1e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	7e-07
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-05
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-05
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	8e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-04
3k9i_A	117	BH0479 protein; putative protein binding protein,	5e-06
3k9i_A	117	BH0479 protein; putative protein binding protein,	5e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	6e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	5e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	7e-06
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-05
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	5e-05
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	8e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	8e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	5e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	7e-04
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	9e-06
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	6e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	7e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	8e-04
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	2e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-05
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	3e-05
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	8e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	9e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	4e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	7e-04
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	2e-04
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	2e-04
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	6e-04
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	6e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	5e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	5e-04
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	9e-04

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score =  542 bits (1398), Expect = 0.0
 Identities = 168/345 (48%), Positives = 225/345 (65%), Gaps = 3/345 (0%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
            + PR F D+ IG E  GRI++E++ D++PKTAENFRALCTGEKGIGP TG PLH+KG  
Sbjct: 13  PSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCP 72

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+IK FMIQGGD S  +GTGGESIYG KFEDENF  KH+++G+LSMANAG NTNGSQF
Sbjct: 73  FHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQF 132

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FITT  T HLDGKHVVFG+VIKGMGV + +E+V     + P     I +CGE+ EG D G
Sbjct: 133 FITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEV-KGEKPAKLCVIAECGELKEGDDWG 191

Query: 181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
           I      GDS+PD+P D D    ++   +   + +K  GN  +K Q+++MA++KY K LR
Sbjct: 192 IFPKDGSGDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLR 251

Query: 241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300
           Y++    +   ++   + L+        N  ACKLK+ D +GA+     A+     N KA
Sbjct: 252 YVE--GSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKA 309

Query: 301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV 345
           L+R+ Q +  L + D A+   +KA ++ P D  I+ EL   K+K+
Sbjct: 310 LYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI 354

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A Length = 179

 Score =  353 bits (909), Expect = e-124
 Identities = 104/173 (60%), Positives = 126/173 (72%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           + RPRCF DI+I  +  GR++ E+++DV PKT ENFR LCTGEKG G +T  PLHYK   
Sbjct: 7   VQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCL 66

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRV+K FM+QGGD S G+G GGESIYG  FEDE+F +KH ++ +LSMAN G +TNGSQF
Sbjct: 67  FHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQF 126

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FITT  T HLDG HVVFG+VI G  VVR IE+  T     P A+V I  CGE+
Sbjct: 127 FITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens} Length = 192

 Score =  353 bits (908), Expect = e-124
 Identities = 98/174 (56%), Positives = 119/174 (68%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
              P+C  DI I  E  GRI+ ++++D+ PKT +NF  LC+GEKG+G  TG  L YKG  
Sbjct: 17  RGSPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGST 76

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRV+K FMIQGGD S G+G GGESIYG  F+DENF LKH+R  +LSMAN G +TNGSQF
Sbjct: 77  FHRVVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQF 136

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIP 174
           FITT    HLDG HVVFG VI G  V+  IE++ T     P ADV + DCG + 
Sbjct: 137 FITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVLA 190

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A* Length = 177

 Score =  350 bits (901), Expect = e-123
 Identities = 101/171 (59%), Positives = 124/171 (72%)

Query: 3   RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFH 62
           R R FLD++I   L GRI++E+YND+ P+T  NF  LCTG  G G  +G PLHYKG  FH
Sbjct: 6   RRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFH 65

Query: 63  RVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFI 122
           RVIK FMIQGGD + GDGTGGESIYG  F+DE F +KH+   ++SMAN GPNTNGSQFFI
Sbjct: 66  RVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFI 125

Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           TTT   HL+  HVVFG+V+ G  VV  IE++ T   + P+ADV I +CGE+
Sbjct: 126 TTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 176

>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A Length = 173

 Score =  336 bits (865), Expect = e-117
 Identities = 105/174 (60%), Positives = 135/174 (77%), Gaps = 2/174 (1%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M+R + F DI+IG +  GRI++E+Y+DV+PKTA NFRALCTGE GIG  +G PLH+KG +
Sbjct: 1   MSRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIG-KSGKPLHFKGSK 59

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I  FMIQGGD + G+GTGGESIYG KF DENF+ KH   G+LSMANAGPNTNGSQF
Sbjct: 60  FHRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQF 119

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIP 174
           F+ T +T  LDGKHVVFGRV++G+ VV+++E   +  +  P+ D  I DCG++ 
Sbjct: 120 FLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGS-QSGKPVKDCMIADCGQLK 172

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A Length = 177

 Score =  336 bits (863), Expect = e-117
 Identities = 98/171 (57%), Positives = 121/171 (70%), Gaps = 3/171 (1%)

Query: 3   RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFH 62
            P  F D+SIG +  GR+ +E++ DV+PKTAENFR  CTGE       GVP+ YKG  FH
Sbjct: 10  NPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFR---KDGVPIGYKGSTFH 66

Query: 63  RVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFI 122
           RVIK FMIQGGD   GDGTG  SIY   F DENF+L+H   G+LSMAN+GP+TNG QFFI
Sbjct: 67  RVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFI 126

Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           T ++   LDGKHVVFG++I G+ V+R IE+V TG N+ P   V I+ CGE+
Sbjct: 127 TCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A* Length = 186

 Score =  332 bits (854), Expect = e-116
 Identities = 103/171 (60%), Positives = 119/171 (69%), Gaps = 2/171 (1%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
              P  + DISIG    GRI +E++ D +P TAENFRALCTGEKG+G  +G PL Y G  
Sbjct: 17  QGNPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQ-SGKPLCYTGSF 75

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I  FMIQGGD + GDGTGGESIYG KF DENF   H+   +LSMANAGPNTNGSQF
Sbjct: 76  FHRIIPQFMIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQF 135

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCG 171
           FITT     LDGKHVVFG+V++GM VV+SIE   +  N  P   V IT  G
Sbjct: 136 FITTVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGS-QNGKPTKSVCITASG 185

>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A* Length = 170

 Score =  327 bits (842), Expect = e-114
 Identities = 99/171 (57%), Positives = 119/171 (69%), Gaps = 3/171 (1%)

Query: 3   RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFH 62
           R + F DISI     GRII E+++D+ P+T ENFRALCTGEK    + G  LHYK   FH
Sbjct: 3   RSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKI--GSRGKNLHYKNSIFH 60

Query: 63  RVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFI 122
           R+I  FM QGGDI+ G+G+GGESIYG  F DENF +KH++ G+LSMANAGPNTN SQFFI
Sbjct: 61  RIIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFI 120

Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           T      LDGKHVVFG+VI+GM VVR +E      +      V ITDCGE+
Sbjct: 121 TLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGA-KSGYVKRSVVITDCGEL 170

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1 Length = 229

 Score =  324 bits (833), Expect = e-112
 Identities = 83/176 (47%), Positives = 119/176 (67%), Gaps = 6/176 (3%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
            + P  F+DI++G    G+   E++ +++PKT+ENFR  CTGE  +     +P+ YK   
Sbjct: 57  PSNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKV---NNLPVGYKNTI 113

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRVIK FMIQGGD    +G+G  SIYG KF+DENF++KH+++G+LSMAN+GPNTNG QF
Sbjct: 114 FHRVIKEFMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQF 173

Query: 121 FITTTRTSHLDGKHVVFGRVI--KGMGVVRSIEHVMTGD-NDCPIADVTITDCGEI 173
           FITT +   LDGK+VVFGR+I    + +++ IE+V        P   + + +CGE+
Sbjct: 174 FITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL 229

>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A* Length = 188

 Score =  322 bits (828), Expect = e-112
 Identities = 98/179 (54%), Positives = 122/179 (68%), Gaps = 8/179 (4%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
            + + D+ IG E  GR+I  ++   +PKT +NF AL TGEKG G        YK  +FHR
Sbjct: 16  VKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFG--------YKNSKFHR 67

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           VIK FMIQGGD + GDGTGG+SIYG +F DENF+LKH   G +SMANAG +TNGSQFFIT
Sbjct: 68  VIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFIT 127

Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGIS 182
           T +T+ LDGKHVVFG+V++GM VVR +E   T   D P+ DV I DCG+I       I+
Sbjct: 128 TVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKIEVEKPFAIA 186

>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A Length = 172

 Score =  317 bits (814), Expect = e-110
 Identities = 92/171 (53%), Positives = 108/171 (63%), Gaps = 9/171 (5%)

Query: 3   RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFH 62
             + + D+ I  E  GRI + ++    P T ENFR LCTGE G G        YK   FH
Sbjct: 11  TAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFG--------YKDSIFH 62

Query: 63  RVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFI 122
           RVI+ FMIQGGD +  DGTGG+SIYG KF DEN  +KH   G LSMANAGPNTNGSQFFI
Sbjct: 63  RVIQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKH-FVGALSMANAGPNTNGSQFFI 121

Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           TT  T  LDG+HVVFG+V+ GM VV  IE   T  +D P+  V I   GE+
Sbjct: 122 TTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172

>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus} Length = 234

 Score =  317 bits (815), Expect = e-109
 Identities = 49/199 (24%), Positives = 83/199 (41%), Gaps = 22/199 (11%)

Query: 3   RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTG---------VP 53
            PR ++DI +  E+ GR+ ++++ D  P   ENF  L  G+     + G         + 
Sbjct: 14  NPRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHIN 73

Query: 54  LHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFED---ENFELKHERKGMLSMA- 109
             Y+G +FH V+    I  GDI   +G+   ++Y  +       ++   HE KG+LS+  
Sbjct: 74  RTYEGCKFHNVLHNNYIVSGDIYNSNGSSAGTVYCDEPIPPVFGDYFYPHESKGLLSLVP 133

Query: 110 ---NAGPNTNGSQFFIT------TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC 160
               +G     S F IT      +     LD   VV G+V  G+ V+  I  ++      
Sbjct: 134 YTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSMIKPYAGR 193

Query: 161 PIADVTITDCGEIPEGADD 179
                +I  CG   + +  
Sbjct: 194 KYPTFSIGKCGAYLDSSQA 212

>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ... Length = 165

 Score =  312 bits (803), Expect = e-108
 Identities = 97/173 (56%), Positives = 118/173 (68%), Gaps = 9/173 (5%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M  P  +LD+    +  GR+++E+  DV+PKTAENFRALCTGEKG G        YKG  
Sbjct: 1   MGNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG--------YKGST 52

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRVI  FM Q GD +  +GTGG+SIYG +F DENF LKH   G+LSMANAGPNTNGSQF
Sbjct: 53  FHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQF 112

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FI T +T  LDGKHVVFG VI+GM VV+ IE   +  +      + ITDCG++
Sbjct: 113 FICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGS-KSGRTSKKIVITDCGQL 164

>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi} Length = 193

 Score =  312 bits (802), Expect = e-108
 Identities = 87/176 (49%), Positives = 111/176 (63%), Gaps = 9/176 (5%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
            A    + D+    E  GRI++++ +D++PKTA+NFR LC   KG G        YKG  
Sbjct: 25  EASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEG--------YKGST 76

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I GFM+QGGD +A +GTGG SIYG KF DENFELKH ++G+LSMAN G +TNGSQF
Sbjct: 77  FHRIIPGFMVQGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQF 136

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGD-NDCPIADVTITDCGEIPE 175
           FIT  +T  LD KHVVFG V++GM VV  I    +          + I DCG +  
Sbjct: 137 FITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSESGQVKKGYRIEIRDCGVLGS 192

>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A Length = 172

 Score =  311 bits (799), Expect = e-108
 Identities = 98/173 (56%), Positives = 120/173 (69%), Gaps = 9/173 (5%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
              PR F DI IG    GRI++E+ +D++P+TAENFRALCTGE+G G        Y    
Sbjct: 8   RNLPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFG--------YHNCC 59

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRVI  FM QGGD   GDGTGG+SIYG KF+DENF+L+HE  G+LSMAN+GPNTNGSQF
Sbjct: 60  FHRVIPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQF 119

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FI TT+   LDGKHVVFGRV+ G  VV+ +E V +  +      V I+ CGE+
Sbjct: 120 FICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGS-KSGKVKEPVIISRCGEL 171

>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A Length = 173

 Score =  311 bits (799), Expect = e-108
 Identities = 93/173 (53%), Positives = 117/173 (67%), Gaps = 9/173 (5%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
            + P+ ++DI IG +  GRI + + +DV+P TAENFR LCT EKG G        +KG  
Sbjct: 9   RSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG--------FKGSS 60

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I  FM QGGD +  +GTGG+SIYG KF+DENF LKH   G+LSMAN+GPNTNGSQF
Sbjct: 61  FHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQF 120

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           F+T  +T  LDGKHVVFG V +G+ V+R IE   +  +  P   V I DCGE 
Sbjct: 121 FLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGS-KDGKPKQKVIIADCGEY 172

>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} PDB: 3o7t_A Length = 164

 Score =  310 bits (796), Expect = e-107
 Identities = 93/172 (54%), Positives = 119/172 (69%), Gaps = 9/172 (5%)

Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
           A    F +ISI  + EGRI+ ++Y++ +PKTA+NFR L TG+ G G        YK   F
Sbjct: 1   AMANVFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG--------YKDSIF 52

Query: 62  HRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HRVI  FM+QGGD +  +GTGG+SIYG KF DENF++KH + G+LSMANAG NTNGSQFF
Sbjct: 53  HRVIPQFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFF 112

Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           ITT  TS LDGKHVVFG VI+G+ +VR +E   +  +    A + ITDCG +
Sbjct: 113 ITTVPTSWLDGKHVVFGEVIEGLDIVRKVEGKGS-ASGKTNATIKITDCGTV 163

>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens} Length = 184

 Score =  310 bits (797), Expect = e-107
 Identities = 98/173 (56%), Positives = 119/173 (68%), Gaps = 9/173 (5%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M  P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YKG  
Sbjct: 20  MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 71

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I GFM QGGD +  +GTGG+SIYG KFEDENF LKH   G+LSMANAGPNTNGSQF
Sbjct: 72  FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 131

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FI T +T  LDGKHVVFG+V +GM +V ++E   +  N      +TI DCG++
Sbjct: 132 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 183

>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1 Length = 172

 Score =  301 bits (773), Expect = e-104
 Identities = 87/180 (48%), Positives = 109/180 (60%), Gaps = 16/180 (8%)

Query: 2   ARPRCFLDIS-----IGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHY 56
           +  + F D+            GRI+  +++  +PKTA+NFR LC    G G        Y
Sbjct: 1   SMSQVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEG--------Y 52

Query: 57  KGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTN 116
           +   FHR+I  FMIQGGD + G+GTGG SIYG KF DENF  KH++KG+LSMANAGPNTN
Sbjct: 53  RESTFHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTN 112

Query: 117 GSQFFITTTRTSHLDGKHVVFGRVI--KGMGVVRSIEHVMTGD-NDCPIADVTITDCGEI 173
           GSQFFITT  TS LDGKHVVFG V   K   VV+ IE + +   +        I +CGE+
Sbjct: 113 GSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL 172

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens} Length = 203

 Score =  271 bits (695), Expect = 1e-91
 Identities = 83/194 (42%), Positives = 112/194 (57%), Gaps = 23/194 (11%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G I++E+Y    PKT +NF  L    +G         +Y G +FHR+IK FMIQGGD + 
Sbjct: 21  GIIVLELYWKHAPKTCKNFAELA--RRG---------YYNGTKFHRIIKDFMIQGGDPT- 68

Query: 78  GDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           G G GG SIYG +FEDE + +LK    G+L+MANAGP+TNGSQFF+T   T  LDGKH +
Sbjct: 69  GTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTI 128

Query: 137 FGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDC-----GEIPEGADDGISNFFNDGDSY 191
           FGRV +G+G+V  +  V T   D P+ DV I        G    G+  G      DG ++
Sbjct: 129 FGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAYPSGGGGSGGGSGGGSGGGSGDGGAF 188

Query: 192 PD-----WPADLDQ 200
           P+     +P D+ +
Sbjct: 189 PEIHVAQYPLDMGR 202

>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1 Length = 160

 Score =  240 bits (614), Expect = 6e-80
 Identities = 72/154 (46%), Positives = 88/154 (57%), Gaps = 13/154 (8%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G I + ++     KT +NF                  +Y    FHRVIK FM+Q GD S 
Sbjct: 15  GDIHISLFYKECKKTVQNFSVHSING-----------YYNNCIFHRVIKHFMVQTGDPS- 62

Query: 78  GDGTGGESIYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           GDGTGGESI+G +FEDE F  L H +  M+SMAN GPNTNGSQFFITT     LD KH V
Sbjct: 63  GDGTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTV 122

Query: 137 FGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDC 170
           FG+V +G  +V  IE V T   D P+ D+ I + 
Sbjct: 123 FGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNI 156

>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 176

 Score =  236 bits (603), Expect = 4e-78
 Identities = 80/170 (47%), Positives = 97/170 (57%), Gaps = 14/170 (8%)

Query: 3   RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFH 62
            P+   D +I     G I  +++    PKT ENF        G         +Y G  FH
Sbjct: 16  GPKRVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHS--RNG---------YYNGHTFH 64

Query: 63  RVIKGFMIQGGDISAGDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFF 121
           R+IKGFMIQ GD + G G GGESI+G +FEDE +  L+H+R   LSMANAG NTNGSQFF
Sbjct: 65  RIIKGFMIQTGDPT-GTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFF 123

Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGD-NDCPIADVTITDC 170
           IT   T  LD KH VFGRV KGM VV+ I +V      D P  DV+I + 
Sbjct: 124 ITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINI 173

>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A Length = 166

 Score =  231 bits (591), Expect = 2e-76
 Identities = 75/151 (49%), Positives = 97/151 (64%), Gaps = 13/151 (8%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G I++E+Y    PKT +NF  L    +G         +Y G +FHR+IK FMIQGGD + 
Sbjct: 21  GIIVLELYWKHAPKTCKNFAELA--RRG---------YYNGTKFHRIIKDFMIQGGDPT- 68

Query: 78  GDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           G G GG SIYG +FEDE + +LK    G+L+MANAGP+TNGSQFF+T   T  LDGKH +
Sbjct: 69  GTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTI 128

Query: 137 FGRVIKGMGVVRSIEHVMTGDNDCPIADVTI 167
           FGRV +G+G+V  +  V T   D P+ DV I
Sbjct: 129 FGRVCQGIGMVNRVGMVETNSQDRPVDDVKI 159

>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1 Length = 196

 Score =  229 bits (586), Expect = 3e-75
 Identities = 76/154 (49%), Positives = 87/154 (56%), Gaps = 13/154 (8%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G   VE+Y    PKT  NF  LC  E G          Y    FHRVI  F+IQGGD + 
Sbjct: 48  GDFEVELYWYHSPKTCLNFYTLC--EMG---------FYDNTIFHRVIPNFVIQGGDPT- 95

Query: 78  GDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           G G GG+SIYG  FEDE N ELKH   G+LSM+N GPNTN SQFFIT     HLDGKH +
Sbjct: 96  GTGKGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTI 155

Query: 137 FGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDC 170
           F RV K M  + +I  V T   + PI D+ I   
Sbjct: 156 FARVSKNMTCIENIASVQTTATNKPIFDLKILRT 189

>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii} Length = 201

 Score =  219 bits (561), Expect = 2e-71
 Identities = 53/165 (32%), Positives = 81/165 (49%), Gaps = 23/165 (13%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G + +E++ D+ P+  ++F  LC  +           ++    FHR I+ FMIQGG    
Sbjct: 16  GSLNIELHADMAPRACDSFLRLCAVK-----------YFDDTIFHRCIRNFMIQGGRAEL 64

Query: 78  GD----GTGGESIY-------GLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTT 125
                     +S         G  FEDE +  L H+  G+LSMAN G ++N S+FFIT  
Sbjct: 65  RQPSKKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFK 124

Query: 126 RTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDC 170
              HL+ KH +FGRV+ G+ V+R  E + T   D P+    + + 
Sbjct: 125 SCEHLNNKHTIFGRVVGGLDVLRQWEKLETDKKDKPLKPPKVEEI 169

>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A Length = 185

 Score =  219 bits (559), Expect = 2e-71
 Identities = 67/174 (38%), Positives = 99/174 (56%), Gaps = 17/174 (9%)

Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
            R   +      +   G +  E++    PK  +NF AL               +YK   F
Sbjct: 10  GRENLYFQGVRIITNYGDLKFELFCSQCPKACKNFLALSASG-----------YYKNTIF 58

Query: 62  HRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENF-ELKHERKGMLSMANAG----PNTN 116
           H+ IKGF+IQGGD + G G GGESIYG  F+DE + ELK++R+G+LSMA+ G    PNTN
Sbjct: 59  HKNIKGFIIQGGDPT-GTGKGGESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTN 117

Query: 117 GSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDC 170
           GSQFFIT +    L+G++V+FG++I G   + ++E+  +  +  PI ++ I D 
Sbjct: 118 GSQFFITYSSLPQLNGEYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKDI 171

>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A* Length = 161

 Score =  214 bits (547), Expect = 8e-70
 Identities = 73/155 (47%), Positives = 94/155 (60%), Gaps = 14/155 (9%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G I +E++ +  PKT ENF ALC              +Y G  FHR IKGFM+Q GD + 
Sbjct: 10  GDIKIEVFCERTPKTCENFLALCASN-----------YYNGCIFHRNIKGFMVQTGDPT- 57

Query: 78  GDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           G G GG SI+G KFEDE +  LKH  +G++SMAN GPNTNGSQFFIT  +  HLD K+ V
Sbjct: 58  GTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTV 117

Query: 137 FGRVIKGMGVVRSIEHVMTGD-NDCPIADVTITDC 170
           FG+VI G+  +  +E +   +    P+ DV I D 
Sbjct: 118 FGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDI 152

>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens} Length = 185

 Score =  209 bits (534), Expect = 1e-67
 Identities = 59/155 (38%), Positives = 86/155 (55%), Gaps = 14/155 (9%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G I +E+++   PK   NF  LC   +          +Y    FHRV+ GF++QGGD + 
Sbjct: 34  GDIDIELWSKEAPKACRNFIQLC--LEA---------YYDNTIFHRVVPGFIVQGGDPT- 81

Query: 78  GDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           G G+GGESIYG  F+DE +  L+  R+G+++MANAG + NGSQFF T  R   L+ KH +
Sbjct: 82  GTGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTI 141

Query: 137 FGRVI-KGMGVVRSIEHVMTGDNDCPIADVTITDC 170
           FG+V    +  +  +  V   D++ P     I  C
Sbjct: 142 FGKVTGDTVYNMLRLSEVDIDDDERPHNPHKIKSC 176

>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 197

 Score =  208 bits (531), Expect = 5e-67
 Identities = 68/155 (43%), Positives = 95/155 (61%), Gaps = 14/155 (9%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G + +E++ D+ PKT ENF  LC  +K          +Y G  FHR I+ F+IQGGD + 
Sbjct: 29  GDLNLELHCDLTPKTCENFIRLC--KKH---------YYDGTIFHRSIRNFVIQGGDPT- 76

Query: 78  GDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           G GTGGES +G  F+DE    L H  +G+LSMAN+GPN+N SQFFIT    ++LD KH +
Sbjct: 77  GTGTGGESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTI 136

Query: 137 FGRVIKGMGVVRSIEHVMTGD-NDCPIADVTITDC 170
           FGRV+ G  V+ ++E+V +    D P  ++ I   
Sbjct: 137 FGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDAT 171

>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1 Length = 191

 Score =  205 bits (523), Expect = 8e-66
 Identities = 70/158 (44%), Positives = 88/158 (55%), Gaps = 11/158 (6%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKG-IGPNTGVPLH---YKGVRFHRVIKGFMIQGG 73
           G I + ++ +  PKT  NF  L  G K     N         Y G  FHRVI+GFMIQGG
Sbjct: 33  GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGG 92

Query: 74  DISAGDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDG 132
           D + G G GG    G KF DE + EL+ ++  +L+MANAGP TNGSQFFIT  +T HL+ 
Sbjct: 93  DPT-GTGRGGP---GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNR 148

Query: 133 KHVVFGRVI--KGMGVVRSIEHVMTGDNDCPIADVTIT 168
           +H +FG VI  +   VV +I    T  ND P   V I 
Sbjct: 149 RHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIE 186

>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 232

 Score =  188 bits (479), Expect = 1e-58
 Identities = 50/171 (29%), Positives = 76/171 (44%), Gaps = 30/171 (17%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G + VE++    P    NF  LC   +G         +Y    FHRV+K F++QGGD + 
Sbjct: 31  GDLDVELWARECPLACRNFVQLC--LEG---------YYVNTIFHRVVKDFIVQGGDPT- 78

Query: 78  GDGTGG--ESIYGLKFEDE-NFELKHERKGMLSMANAGPN--------------TNGSQF 120
           G G GG   +  G  F+ E +  LK   +G++ +AN G +              TNG+QF
Sbjct: 79  GTGRGGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQF 138

Query: 121 FITTTRTSHLDGKHVVFGRVI-KGMGVVRSIEHVMTGDNDCPIADVTITDC 170
           FIT  R   L+  + +FG+V    +  +     +  G  D P+    I   
Sbjct: 139 FITLARADVLNNAYTLFGKVTGHTLYNLMKFNDLEVGKEDRPMTPPFIKSV 189

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score =  155 bits (393), Expect = 1e-46
 Identities = 39/138 (28%), Positives = 71/138 (51%), Gaps = 1/138 (0%)

Query: 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFT 268
           + +V++++  GNE + ++DYK A+  YR AL  LD    +E   E +   L +    ++ 
Sbjct: 8   LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYA 67

Query: 269 NSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE 328
           N S C L +GDL  A   +   ++  + N KALFR+ +A +A   +D A E  +  L+  
Sbjct: 68  NMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127

Query: 329 PNDGG-IKKELAVAKKKV 345
           P     + +E+ +  ++ 
Sbjct: 128 PAAASVVAREMKIVTERR 145

>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} PDB: 3t1u_A* Length = 167

 Score =  153 bits (390), Expect = 3e-46
 Identities = 56/172 (32%), Positives = 75/172 (43%), Gaps = 32/172 (18%)

Query: 14  VELE---GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMI 70
           VEL    G I +E+     PKT ENF      +KG         HY G  FHRVI GFMI
Sbjct: 6   VELHTNHGVIKLELDEAKAPKTVENFLNYV--KKG---------HYDGTIFHRVINGFMI 54

Query: 71  QGGDISAGDGTGGESIYGLKFEDE-NFELKHERKGMLSMA-NAGPNTNGSQFFITTTRTS 128
           QGG           +       +E N  LK++    ++MA    P++  +QFFI      
Sbjct: 55  QGGGFE-PGLKQKPT--DAPIANEANNGLKNDT-YTIAMARTNDPHSATAQFFINVNDNE 110

Query: 129 HLDGK--------HVVFGRVIKGMGVVRSIEHVMTGD----NDCPIADVTIT 168
            L+          + VFG+V++G  +V  I+ V TG      D P  DV I 
Sbjct: 111 FLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVPNDDVVIE 162

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score =  153 bits (387), Expect = 2e-45
 Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 2/137 (1%)

Query: 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFT 268
           + +   IK  GNE +KK +   A+ KY++AL +     E +  D+      +  +     
Sbjct: 35  VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWD--DQILLDKKKNIEISCNL 92

Query: 269 NSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE 328
           N + C  K  D   A+      ++   +NVKAL++ G A M    ++ A E+  KA  L 
Sbjct: 93  NLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152

Query: 329 PNDGGIKKELAVAKKKV 345
           PN+  I+    +   K+
Sbjct: 153 PNNLDIRNSYELCVNKL 169

>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A Length = 166

 Score =  151 bits (383), Expect = 4e-45
 Identities = 53/168 (31%), Positives = 72/168 (42%), Gaps = 27/168 (16%)

Query: 14  VELE---GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMI 70
           V L    G I +E+     P + +NF        G          Y    FHRVI GFMI
Sbjct: 7   VLLTTSAGNIELELDKQKAPVSVQNFVDYV--NSG---------FYNNTTFHRVIPGFMI 55

Query: 71  QGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMA-NAGPNTNGSQFFITTTRTSH 129
           QGG  +       +    +K E +N  L++ R G ++MA  A  ++  SQFFI     + 
Sbjct: 56  QGGGFT-EQMQQKKPNPPIKNEADN-GLRNTR-GTIAMARTADKDSATSQFFINVADNAF 112

Query: 130 LDG-----KHVVFGRVIKGMGVVRSIEHVMTGD----NDCPIADVTIT 168
           LD       + VFG+V+KGM V   I  V T D     + P   V I 
Sbjct: 113 LDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVIL 160

>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A Length = 164

 Score =  150 bits (382), Expect = 5e-45
 Identities = 53/172 (30%), Positives = 75/172 (43%), Gaps = 32/172 (18%)

Query: 14  VELE---GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMI 70
           V      G I+++ ++D  P+T +NF   C   +G          Y    FHRVI GFMI
Sbjct: 2   VTFHTNHGDIVIKTFDDKAPETVKNFLDYC--REG---------FYNNTIFHRVINGFMI 50

Query: 71  QGGDISAGDGTGGESIYGLKFEDE-NFELKHERKGMLSMA-NAGPNTNGSQFFITTTRTS 128
           QGG     +    +       ++E N  LK+ R G L+MA    P++  +QFFI      
Sbjct: 51  QGGG---FEPGMKQKATKEPIKNEANNGLKNTR-GTLAMARTQAPHSATAQFFINVVDND 106

Query: 129 HLDGK--------HVVFGRVIKGMGVVRSIEHVMTGDN----DCPIADVTIT 168
            L+          + VF  V+ GM  V  I+ V TG +    D P  DV I 
Sbjct: 107 FLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVIIE 158

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score =  153 bits (388), Expect = 5e-44
 Identities = 43/231 (18%), Positives = 96/231 (41%), Gaps = 14/231 (6%)

Query: 127 TSHLDGKHVVF-----GRVIKGMGV-VRSIEH----VMTGDNDCPIADVTITDCGEIPEG 176
            +  + + +        + + G+ + V S++     ++    +             +P  
Sbjct: 87  DTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPM 146

Query: 177 ADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYR 236
           AD     +  +   + +      ++   +   + A D  K+ GN  +K++  + A+++Y 
Sbjct: 147 AD---LLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYE 203

Query: 237 KALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD 296
            A+ Y+   +  +   + +       K+    N +AC +KL     A+      + + + 
Sbjct: 204 MAIAYMGDDFMFQLYGKYQDM-ALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEK 262

Query: 297 NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVSR 347
           N KALFR+G+A   L  +D+A + F KA K  P+D  I++EL    ++   
Sbjct: 263 NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKA 313

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score =  151 bits (382), Expect = 4e-43
 Identities = 45/179 (25%), Positives = 82/179 (45%), Gaps = 9/179 (5%)

Query: 169 DCGEIPEGADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDY 228
           +  +IP  A+          +   +     +    E    +     +K  G  ++K+  Y
Sbjct: 110 EKFQIPPNAELKYELHLKSFEKAKESW---EMNSEEK---LEQSTIVKERGTVYFKEGKY 163

Query: 229 KMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE 288
           K AL +Y+K + +L+        +  K+ +LR        N + C LKL     A+    
Sbjct: 164 KQALLQYKKIVSWLEYESSFSNEEAQKAQALRLA---SHLNLAMCHLKLQAFSAAIESCN 220

Query: 289 FAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVSR 347
            A+    +N K L R+G+A++A+ND + A   F+K L+L PN+   K +LAV ++++ R
Sbjct: 221 KALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRR 279

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score =  133 bits (335), Expect = 2e-35
 Identities = 34/155 (21%), Positives = 73/155 (47%), Gaps = 3/155 (1%)

Query: 193 DWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGID 252
            +    +    +    +     +K  G  ++K   Y  A+ +Y K + +L++ +   G+ 
Sbjct: 249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEY---GLS 305

Query: 253 EGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALN 312
           E +S +        F N + C LKL +   A+   + A+     N K L+R+G+A + +N
Sbjct: 306 EKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMN 365

Query: 313 DVDAAVESFEKALKLEPNDGGIKKELAVAKKKVSR 347
           + ++A   FEK L++ P +   + ++++ +KK   
Sbjct: 366 EFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKE 400

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana} Length = 369

 Score =  127 bits (319), Expect = 1e-33
 Identities = 36/190 (18%), Positives = 59/190 (31%), Gaps = 52/190 (27%)

Query: 17  EGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDIS 76
           +    + +     P TA NF  L   E+           Y G+   R   GF++Q GD  
Sbjct: 187 DCVFRIVLDGYNAPVTAGNFVDLV--ERHF---------YDGMEIQRSD-GFVVQTGDPE 234

Query: 77  AGDGTG--------------------GESIYGLKFED-----ENFELKHERKGMLSMANA 111
                                         YG   E+         +     G ++MA  
Sbjct: 235 GPAEGFIDPSTEKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMARE 294

Query: 112 G--PNTNGSQFFI-------TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI 162
               ++  SQ F        T + ++ LDG++ VFG V      +  ++    GD    I
Sbjct: 295 EFENDSGSSQVFWLLKESELTPSNSNILDGRYAVFGYVTDNEDFLADLK---VGD---VI 348

Query: 163 ADVTITDCGE 172
             + +    E
Sbjct: 349 ESIQVVSGLE 358

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score =  106 bits (266), Expect = 3e-28
 Identities = 42/159 (26%), Positives = 67/159 (42%), Gaps = 20/159 (12%)

Query: 188 GDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE 247
             S P  P     TP       ++V+ ++  GNE +K  DY  AL  Y +AL        
Sbjct: 9   TVSGPGTPEPRPATPGA-----SSVEQLRKEGNELFKCGDYGGALAAYTQALGL------ 57

Query: 248 KEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQA 307
                     +  + ++ +  N +AC LKL D   A  +   A+     +VKAL+R+ QA
Sbjct: 58  ---------DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQA 108

Query: 308 YMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346
              L  +D AV   ++ + LEP +   ++ L       S
Sbjct: 109 LEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGPSS 147

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score =  103 bits (258), Expect = 2e-27
 Identities = 32/136 (23%), Positives = 54/136 (39%), Gaps = 18/136 (13%)

Query: 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFT 268
           M  V+ +K  GN+     +   AL+ Y +A+                   L      +++
Sbjct: 1   MEQVNELKEKGNKALSVGNIDDALQCYSEAI------------------KLDPHNHVLYS 42

Query: 269 NSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE 328
           N SA   K GD + A  D    +    D  K   R+  A   LN  + A  ++E+ LK E
Sbjct: 43  NRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHE 102

Query: 329 PNDGGIKKELAVAKKK 344
            N+  +K+ L   + +
Sbjct: 103 ANNPQLKEGLQNMEAR 118

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 98.8 bits (247), Expect = 1e-25
 Identities = 29/131 (22%), Positives = 60/131 (45%), Gaps = 18/131 (13%)

Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA 272
              K  GNE++KK DY  A+R Y +A++                       + +++N +A
Sbjct: 14  QEEKNKGNEYFKKGDYPTAMRHYNEAVK------------------RDPENAILYSNRAA 55

Query: 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG 332
           C  KL + + AL D +  +R     +K   R+    +A+ +   A  ++E AL+++P++ 
Sbjct: 56  CLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNE 115

Query: 333 GIKKELAVAKK 343
             ++ +    +
Sbjct: 116 EAREGVRNCLR 126

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 99.4 bits (248), Expect = 2e-25
 Identities = 30/135 (22%), Positives = 58/135 (42%), Gaps = 18/135 (13%)

Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA 272
           + +K   N+++K +DY+ A++ Y +A+                   L  + +  + N S 
Sbjct: 14  EELKTQANDYFKAKDYENAIKFYSQAIE------------------LNPSNAIYYGNRSL 55

Query: 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG 332
             L+      AL D   A+      +K  +R+  + MAL    AA+  +E  +K++P+D 
Sbjct: 56  AYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK 115

Query: 333 GIKKELAVAKKKVSR 347
             K +     K V +
Sbjct: 116 DAKMKYQECNKIVKQ 130

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 95.4 bits (238), Expect = 2e-24
 Identities = 39/133 (29%), Positives = 62/133 (46%), Gaps = 18/133 (13%)

Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA 272
           + +K  GNE  K ++++ A+  Y KA+                   L    +  F N +A
Sbjct: 13  ERLKTEGNEQMKVENFEAAVHFYGKAI------------------ELNPANAVYFCNRAA 54

Query: 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG 332
              KLG+  GA+ D E A+       KA  R G A  +LN    AV  ++KAL+L+P++ 
Sbjct: 55  AYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNE 114

Query: 333 GIKKELAVAKKKV 345
             K  L +A+ K+
Sbjct: 115 TYKSNLKIAELKL 127

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 95.0 bits (237), Expect = 3e-24
 Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 18/132 (13%)

Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA 272
             +K  GNE ++K DY  A++ Y +A++                       +++++N +A
Sbjct: 17  LMVKNKGNECFQKGDYPQAMKHYTEAIK------------------RNPKDAKLYSNRAA 58

Query: 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG 332
           C  KL + + AL D E  ++     +K   R+  A  A+ D   A++ ++KAL L+ +  
Sbjct: 59  CYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCK 118

Query: 333 GIKKELAVAKKK 344
                       
Sbjct: 119 EAADGYQRCMMA 130

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 95.1 bits (237), Expect = 4e-24
 Identities = 32/137 (23%), Positives = 52/137 (37%), Gaps = 23/137 (16%)

Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA 272
             +K  GN  +  + Y  A   Y +A+                  +     +  +TN + 
Sbjct: 10  QELKEQGNRLFVGRKYPEAAACYGRAI------------------TRNPLVAVYYTNRAL 51

Query: 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG 332
           C LK+   + AL D   A+     +VKA F  GQ  + +   D A+ + ++A  L     
Sbjct: 52  CYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 111

Query: 333 G-----IKKELAVAKKK 344
                 I   L +AKKK
Sbjct: 112 LNFGDDIPSALRIAKKK 128

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 95.2 bits (237), Expect = 8e-24
 Identities = 34/135 (25%), Positives = 53/135 (39%), Gaps = 20/135 (14%)

Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA 272
           D +K  GN    +++Y  A+  Y +AL                  S+        +N +A
Sbjct: 12  DKLKSEGNAAMARKEYSKAIDLYTQAL------------------SIAPANPIYLSNRAA 53

Query: 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG 332
                G  + A  D E A        KA  R G A   + D   A E++EK ++ E N G
Sbjct: 54  AYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGG 113

Query: 333 --GIKKELAVAKKKV 345
              +K+ L   K+K+
Sbjct: 114 SDAMKRGLETTKRKI 128

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 89.3 bits (222), Expect = 3e-22
 Identities = 26/137 (18%), Positives = 59/137 (43%), Gaps = 20/137 (14%)

Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA 272
           +  ++ G E++ K D+  A++ Y + ++                       ++ ++N +A
Sbjct: 5   EEARLEGKEYFTKSDWPNAVKAYTEMIK------------------RAPEDARGYSNRAA 46

Query: 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP--N 330
              KL     A+ D   A+    + V+A  R+  A +A+ +  +A+E+ + A   +   N
Sbjct: 47  ALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN 106

Query: 331 DGGIKKELAVAKKKVSR 347
           +G   +E+     K S+
Sbjct: 107 NGSSAREIDQLYYKASQ 123

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 82.4 bits (204), Expect = 1e-19
 Identities = 34/140 (24%), Positives = 50/140 (35%), Gaps = 26/140 (18%)

Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA 272
              K  GN+ YKK+D+  AL+ Y KA                    L  T     TN +A
Sbjct: 5   LKEKELGNDAYKKKDFDTALKHYDKAK------------------ELDPTNMTYITNQAA 46

Query: 273 CKLKLGDLKGALLDTEFAMRDGDDN-------VKALFRQGQAYMALNDVDAAVESFEKAL 325
              + GD        E A+  G +N        KA  R G +Y        A+  + K+L
Sbjct: 47  VYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL 106

Query: 326 KLEPNDGGIKKELAVAKKKV 345
                   + K+   A+K +
Sbjct: 107 AEHRTP-DVLKKCQQAEKIL 125

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 86.1 bits (213), Expect = 2e-19
 Identities = 32/137 (23%), Positives = 51/137 (37%), Gaps = 23/137 (16%)

Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA 272
             +K  GN  +  + Y  A   Y +A+                        +  +TN + 
Sbjct: 5   QELKEQGNRLFVGRKYPEAAACYGRAIT------------------RNPLVAVYYTNRAL 46

Query: 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND- 331
           C LK+   + AL D   A+     +VKA F  GQ  + +   D A+ + ++A  L     
Sbjct: 47  CYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 106

Query: 332 ----GGIKKELAVAKKK 344
                 I   L +AKKK
Sbjct: 107 LNFGDDIPSALRIAKKK 123

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 81.5 bits (202), Expect = 2e-17
 Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 14/134 (10%)

Query: 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNS 270
            ++ +     E  +   Y  A  KY   ++           +     S+ +   +     
Sbjct: 233 KLNKLIESAEELIRDGRYTDATSKYESVMK----------TE----PSVAEYTVRSKERI 278

Query: 271 SACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN 330
             C  K      A+      ++   DNV AL  + +AY+     D A++ +E A +   N
Sbjct: 279 CHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN 338

Query: 331 DGGIKKELAVAKKK 344
           D  I++ L  A++ 
Sbjct: 339 DQQIREGLEKAQRL 352

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 68.8 bits (169), Expect = 3e-13
 Identities = 22/125 (17%), Positives = 40/125 (32%), Gaps = 18/125 (14%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G +         AL ++  A+                           +   +   L +G
Sbjct: 10  GKKLLAAGQLADALSQFHAAVD------------------GDPDNYIAYYRRATVFLAMG 51

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
             K AL D    +    D   A  ++G   +    +D A + F+K LK  P++   K+  
Sbjct: 52  KSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAE 111

Query: 339 AVAKK 343
           +   K
Sbjct: 112 SQLVK 116

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 68.1 bits (167), Expect = 5e-13
 Identities = 22/125 (17%), Positives = 45/125 (36%), Gaps = 18/125 (14%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
             + +   DY  A+    K L                   +    +++    + C +K G
Sbjct: 127 ALDAFDGADYTAAITFLDKILE------------------VCVWDAELRELRAECFIKEG 168

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
           + + A+ D + A +   DN +A ++    Y  L D + ++    + LKL+ +        
Sbjct: 169 EPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHY 228

Query: 339 AVAKK 343
              KK
Sbjct: 229 KQVKK 233

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 61.9 bits (151), Expect = 6e-11
 Identities = 14/113 (12%), Positives = 42/113 (37%), Gaps = 3/113 (2%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G+   K+     A   ++K L+       ++   E +S  ++  + Q   + +       
Sbjct: 78  GHLLLKQGKLDEAEDDFKKVLK---SNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGA 134

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
           D   A+   +  +     + +    + + ++   +   A+   + A KL+ ++
Sbjct: 135 DYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDN 187

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 49.6 bits (119), Expect = 6e-07
 Identities = 16/70 (22%), Positives = 28/70 (40%)

Query: 275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI 334
           L  G L  AL     A+    DN  A +R+   ++A+    AA+    K + L+ +    
Sbjct: 14  LAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAA 73

Query: 335 KKELAVAKKK 344
           + +      K
Sbjct: 74  RLQRGHLLLK 83

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 39.9 bits (94), Expect = 7e-04
 Identities = 7/35 (20%), Positives = 17/35 (48%)

Query: 297 NVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
           +V+     G+  +A   +  A+  F  A+  +P++
Sbjct: 2   DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN 36

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 81.7 bits (202), Expect = 3e-17
 Identities = 30/135 (22%), Positives = 58/135 (42%), Gaps = 18/135 (13%)

Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA 272
           + +K   N+++K +DY+ A++ Y +A+                   L  + +  + N S 
Sbjct: 7   EELKTQANDYFKAKDYENAIKFYSQAI------------------ELNPSNAIYYGNRSL 48

Query: 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG 332
             L+      AL D   A+      +K  +R+  + MAL    AA+  +E  +K++P+D 
Sbjct: 49  AYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK 108

Query: 333 GIKKELAVAKKKVSR 347
             K +     K V +
Sbjct: 109 DAKMKYQECNKIVKQ 123

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 81.3 bits (201), Expect = 4e-17
 Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 14/134 (10%)

Query: 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNS 270
            ++ +     E  +   Y  A  KY   ++           +     S+ +   +     
Sbjct: 256 KLNKLIESAEELIRDGRYTDATSKYESVMK----------TE----PSIAEYTVRSKERI 301

Query: 271 SACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN 330
             C  K      A+      ++   DNV AL  + +AY+     D A++ +E A +   N
Sbjct: 302 CHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN 361

Query: 331 DGGIKKELAVAKKK 344
           D  I++ L  A++ 
Sbjct: 362 DQQIREGLEKAQRL 375

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 72.0 bits (177), Expect = 4e-14
 Identities = 22/125 (17%), Positives = 41/125 (32%), Gaps = 18/125 (14%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G +         AL ++  A+                           +   +   L +G
Sbjct: 33  GKKLLAAGQLADALSQFHAAV------------------DGDPDNYIAYYRRATVFLAMG 74

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
             K AL D    ++   D   A  ++G   +    +D A + F+K LK  P++   K+  
Sbjct: 75  KSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQ 134

Query: 339 AVAKK 343
           +   K
Sbjct: 135 SQLIK 139

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 68.6 bits (168), Expect = 5e-13
 Identities = 24/125 (19%), Positives = 47/125 (37%), Gaps = 18/125 (14%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
               +   DY  A+    K L                 + LR+ +++       C +K G
Sbjct: 150 ALNAFGSGDYTAAIAFLDKILEV-----------CVWDAELRELRAE-------CFIKEG 191

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
           + + A+ D + A +  +DN +A ++    Y  L D + ++    + LKL+ +        
Sbjct: 192 EPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHY 251

Query: 339 AVAKK 343
              KK
Sbjct: 252 KQVKK 256

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 15/113 (13%), Positives = 42/113 (37%), Gaps = 3/113 (2%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G+   K+     A   ++K L+       +    E +S  ++  + Q   + +      G
Sbjct: 101 GHLLLKQGKLDEAEDDFKKVLK---SNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSG 157

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
           D   A+   +  +     + +    + + ++   +   A+   + A KL+ ++
Sbjct: 158 DYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDN 210

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 16/71 (22%), Positives = 29/71 (40%)

Query: 274 KLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG 333
            L  G L  AL     A+    DN  A +R+   ++A+    AA+    K ++L+ +   
Sbjct: 36  LLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTA 95

Query: 334 IKKELAVAKKK 344
            + +      K
Sbjct: 96  ARLQRGHLLLK 106

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 75.4 bits (186), Expect = 5e-17
 Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 26/138 (18%)

Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA 272
            + K  GN  YK++D++ A   Y KA+                   L  +    + N +A
Sbjct: 9   IAEKDLGNAAYKQKDFEKAHVHYDKAI------------------ELDPSNITFYNNKAA 50

Query: 273 CKLKLGDLKGALLDTEFAMRDGDDN-------VKALFRQGQAYMALNDVDAAVESFEKAL 325
              +       +   E A+  G +         KA+ R G A+   ND+  AV+ F ++L
Sbjct: 51  VYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSL 110

Query: 326 KLEPNDGGIKKELAVAKK 343
               +   + K++   +K
Sbjct: 111 SEFRDP-ELVKKVKELEK 127

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 67.7 bits (166), Expect = 2e-14
 Identities = 19/124 (15%), Positives = 42/124 (33%), Gaps = 24/124 (19%)

Query: 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFT 268
           M+  +  K  GN  +K+  Y+ A+  Y + +                  + +      ++
Sbjct: 1   MSQFEKQKEQGNSLFKQGLYREAVHCYDQLI------------------TAQPQNPVGYS 42

Query: 269 NSSACKLKLGDLKGALLDTEFAMRDGDDNVKAL------FRQGQAYMALNDVDAAVESFE 322
           N +   +KLG+   A+   +  +R               +R   A  A+  V   V   +
Sbjct: 43  NKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVD 102

Query: 323 KALK 326
           +  +
Sbjct: 103 ELPE 106

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 70.5 bits (173), Expect = 1e-13
 Identities = 24/147 (16%), Positives = 48/147 (32%), Gaps = 19/147 (12%)

Query: 198 LDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSS 257
           LD+   +         S++  G   + K D   A    +KA+                  
Sbjct: 223 LDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL---------------- 266

Query: 258 SLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAA 317
                +   +   +       D        + A++   +N    + +GQ    L + D A
Sbjct: 267 ---FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQA 323

Query: 318 VESFEKALKLEPNDGGIKKELAVAKKK 344
            + F+KA +L+P +     +LA    +
Sbjct: 324 GKDFDKAKELDPENIFPYIQLACLAYR 350

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 63.6 bits (155), Expect = 2e-11
 Identities = 30/130 (23%), Positives = 49/130 (37%), Gaps = 20/130 (15%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           GN+ ++ + Y  A++ Y  AL                     K     ++N SAC + +G
Sbjct: 13  GNQFFRNKKYDDAIKYYNWALEL-------------------KEDPVFYSNLSACYVSVG 53

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEK-ALKLEPNDGGIKKE 337
           DLK  +  +  A+    D  K L R+  A   L     A+      +L  + ND  I+  
Sbjct: 54  DLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPM 113

Query: 338 LAVAKKKVSR 347
           L     K + 
Sbjct: 114 LERNLNKQAM 123

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 60.9 bits (148), Expect = 2e-10
 Identities = 16/113 (14%), Positives = 33/113 (29%), Gaps = 18/113 (15%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G  ++  Q+Y  A + + KA                    L       +   +    +  
Sbjct: 311 GQMNFILQNYDQAGKDFDKAKE------------------LDPENIFPYIQLACLAYREN 352

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
                      A R   +  +      +     ND D A++ ++ A++LE   
Sbjct: 353 KFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL 405

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 56.3 bits (136), Expect = 5e-09
 Identities = 21/133 (15%), Positives = 40/133 (30%), Gaps = 27/133 (20%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK-- 276
                 K D+  AL++Y  A+                   L      I+   +    K  
Sbjct: 379 AEILTDKNDFDKALKQYDLAIE------------------LENKLDGIYVGIAPLVGKAT 420

Query: 277 -------LGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP 329
                  + +   A    E A +    + +A     Q  +   D+D A+  FE++  L  
Sbjct: 421 LLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480

Query: 330 NDGGIKKELAVAK 342
                 + +  A+
Sbjct: 481 TMEEKLQAITFAE 493

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 52.4 bits (126), Expect = 9e-08
 Identities = 18/135 (13%), Positives = 33/135 (24%), Gaps = 27/135 (20%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
               Y++  +      + +A R                        ++    +       
Sbjct: 345 ACLAYRENKFDDCETLFSEAKR------------------KFPEAPEVPNFFAEILTDKN 386

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAY---------MALNDVDAAVESFEKALKLEP 329
           D   AL   + A+   +                        + +   A    EKA KL+P
Sbjct: 387 DFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP 446

Query: 330 NDGGIKKELAVAKKK 344
                K  LA  K +
Sbjct: 447 RSEQAKIGLAQMKLQ 461

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 20/147 (13%), Positives = 42/147 (28%), Gaps = 6/147 (4%)

Query: 185 FNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDI 244
           F D D+    P +L   P +                  +     ++    Y ++      
Sbjct: 130 FGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEA--- 186

Query: 245 CWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQ 304
               + +  G S+  +++         +        +  L       +  +    +L   
Sbjct: 187 ---DKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243

Query: 305 GQAYMALNDVDAAVESFEKALKLEPND 331
           G      ND   A E  +KA++L P  
Sbjct: 244 GIFKFLKNDPLGAHEDIKKAIELFPRV 270

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 68.7 bits (169), Expect = 2e-13
 Identities = 21/126 (16%), Positives = 49/126 (38%), Gaps = 18/126 (14%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G E++ K D+  A++ Y + ++                       ++ ++N +A   KL 
Sbjct: 146 GKEYFTKSDWPNAVKAYTEMIK------------------RAPEDARGYSNRAAALAKLM 187

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
               A+ D   A+    + V+A  R+  A +A+ +  +A+E+ + A   +          
Sbjct: 188 SFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAR 247

Query: 339 AVAKKK 344
            + +  
Sbjct: 248 EIDQLY 253

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 59.5 bits (145), Expect = 2e-10
 Identities = 17/126 (13%), Positives = 39/126 (30%), Gaps = 25/126 (19%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           GN+ YK + +  A+  Y KA                              N +A + + G
Sbjct: 12  GNKFYKARQFDEAIEHYNKAWEL-------------------HKDITYLNNRAAAEYEKG 52

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND------G 332
           + + A+     A+  G +         +++  + +    +   +K ++            
Sbjct: 53  EYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTA 112

Query: 333 GIKKEL 338
            I  +L
Sbjct: 113 DILTKL 118

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 53.7 bits (130), Expect = 2e-08
 Identities = 17/113 (15%), Positives = 35/113 (30%), Gaps = 19/113 (16%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
                +  +    L   +K + Y                     KS     ++    KL 
Sbjct: 79  SKSFARIGNAYHKLGDLKKTIEY-------------------YQKSLTEHRTADILTKLR 119

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
           + +  L   E       +  +    +G+ Y   +D   AV+++ + +K  P D
Sbjct: 120 NAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED 172

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 8/69 (11%), Positives = 23/69 (33%), Gaps = 1/69 (1%)

Query: 276 KLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIK 335
           K      A+     A  +   ++  L  +  A     + + A+ +   A++         
Sbjct: 17  KARQFDEAIEHYNKAW-ELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADY 75

Query: 336 KELAVAKKK 344
           K ++ +  +
Sbjct: 76  KVISKSFAR 84

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 64.4 bits (157), Expect = 9e-13
 Identities = 21/157 (13%), Positives = 41/157 (26%), Gaps = 28/157 (17%)

Query: 175 EGADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRK 234
           E     + +  N G +  D         + +    +       +  + Y K   + A   
Sbjct: 9   ESISTAVIDAINSGATLKD---INAIPDDMMDDIYS-------YAYDFYNKGRIEEAEVF 58

Query: 235 YRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294
           +R    Y                             +A        + A      A   G
Sbjct: 59  FRFLCIY------------------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100

Query: 295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
            ++   +F  GQ  + L     A E FE  ++   ++
Sbjct: 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 65.2 bits (159), Expect = 7e-12
 Identities = 20/126 (15%), Positives = 41/126 (32%), Gaps = 11/126 (8%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G   + K D + A+  ++ AL  +            K+ S  K  +  + N      KL 
Sbjct: 482 GVVAFNKSDMQTAINHFQNALLLVK-----------KTQSNEKPWAATWANLGHAYRKLK 530

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
               A+      +    ++          Y+       A+    ++L + PN+      L
Sbjct: 531 MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLL 590

Query: 339 AVAKKK 344
             A ++
Sbjct: 591 KRALEE 596

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 54.8 bits (132), Expect = 2e-08
 Identities = 15/138 (10%), Positives = 34/138 (24%), Gaps = 31/138 (22%)

Query: 198 LDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR---YLDICWEKEGIDEG 254
           ++         +          +  + +  +   L    K L    Y    +        
Sbjct: 298 INGLEKSSDLLLC-------KADTLFVRSRFIDVLAITTKILEIDPYNLDVYP------- 343

Query: 255 KSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDV 314
                            A   + G+     L +   +    +        G  Y+ +N +
Sbjct: 344 --------------LHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKI 389

Query: 315 DAAVESFEKALKLEPNDG 332
             A   F K+  ++P  G
Sbjct: 390 SEARRYFSKSSTMDPQFG 407

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 52.1 bits (125), Expect = 1e-07
 Identities = 16/132 (12%), Positives = 37/132 (28%), Gaps = 19/132 (14%)

Query: 219 GNEHYKKQDYKMALRKYRKALR---------------YLDICWEKEGIDEGKSSSLRKTK 263
           G  +    ++  A   Y++AL                +L    E+  +    + S    +
Sbjct: 207 GQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKE 266

Query: 264 SQIFT----NSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVE 319
              F          K    D      D   ++   + +   L  +       +     + 
Sbjct: 267 DAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLA 326

Query: 320 SFEKALKLEPND 331
              K L+++P +
Sbjct: 327 ITTKILEIDPYN 338

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 50.2 bits (120), Expect = 6e-07
 Identities = 19/124 (15%), Positives = 38/124 (30%), Gaps = 18/124 (14%)

Query: 218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL 277
           F +    + ++  A+  Y  A R                  L +     +       ++L
Sbjct: 413 FAHSFAIEGEHDQAISAYTTAAR------------------LFQGTHLPYLFLGMQHMQL 454

Query: 278 GDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKE 337
           G++  A    + +      +   L   G      +D+  A+  F+ AL L       +K 
Sbjct: 455 GNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP 514

Query: 338 LAVA 341
            A  
Sbjct: 515 WAAT 518

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 32/166 (19%), Positives = 64/166 (38%), Gaps = 30/166 (18%)

Query: 196 ADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR---------YLDICW 246
           + L +   + +  ++  D ++++ ++   +Q YK A     K L          +L   +
Sbjct: 68  SFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVY 127

Query: 247 EKEG-----IDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGAL--------------LDT 287
              G             L    S     ++ C +KL D +GAL                 
Sbjct: 128 CCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNAN 187

Query: 288 EFAMRDGDDNVKA--LFRQGQAYMALNDVDAAVESFEKALKLEPND 331
           +  M+DG   ++A   + +GQ Y  L++ D A E +++AL ++   
Sbjct: 188 KLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKC 233

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 60.5 bits (147), Expect = 2e-11
 Identities = 22/146 (15%), Positives = 42/146 (28%), Gaps = 28/146 (19%)

Query: 186 NDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC 245
           +DG +          + + L             G   Y+   +  A + ++         
Sbjct: 2   SDGGTLAML---RGLSEDTLEQLYA-------LGFNQYQAGKWDDAQKIFQALCM----- 46

Query: 246 WEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQG 305
                        L    ++ F    AC+  LG  + AL    +      +  +  F   
Sbjct: 47  -------------LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAA 93

Query: 306 QAYMALNDVDAAVESFEKALKLEPND 331
           + ++ L D+D A   F  A  L    
Sbjct: 94  ECHLQLGDLDGAESGFYSARALAAAQ 119

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 61.3 bits (149), Expect = 3e-11
 Identities = 19/113 (16%), Positives = 42/113 (37%), Gaps = 2/113 (1%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
            +   +      A+  +R+ +  L+I    E           +  S++ T  +    K  
Sbjct: 11  VSAAIEAGQNGQAVSYFRQTIA-LNI-DRTEMYYWTNVDKNSEISSKLATELALAYKKNR 68

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
           +   A L  +  ++   +NV  L    +  +       A+  +EK L+LE ++
Sbjct: 69  NYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN 121

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 53.2 bits (128), Expect = 1e-08
 Identities = 21/123 (17%), Positives = 33/123 (26%), Gaps = 19/123 (15%)

Query: 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTN 269
           N VD ++        +   K ALR Y K L                   L          
Sbjct: 86  NNVDCLEACAEMQVCRGQEKDALRMYEKIL------------------QLEADNLAANIF 127

Query: 270 -SSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE 328
             +   L     K  L      +        A +R G + +     + A  S +K +   
Sbjct: 128 LGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF 187

Query: 329 PND 331
           P+ 
Sbjct: 188 PST 190

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 19/127 (14%), Positives = 36/127 (28%), Gaps = 19/127 (14%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
              + K ++Y  A   Y++ L+                              +  ++  G
Sbjct: 61  ALAYKKNRNYDKAYLFYKELLQ------------------KAPNNVDCLEACAEMQVCRG 102

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMA-LNDVDAAVESFEKALKLEPNDGGIKKE 337
             K AL   E  ++   DN+ A    G  Y          +E+  K L         +  
Sbjct: 103 QEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYR 162

Query: 338 LAVAKKK 344
             ++K  
Sbjct: 163 DGLSKLF 169

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 6/35 (17%), Positives = 14/35 (40%)

Query: 297 NVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
           +V  + ++  A +       AV  F + + L  + 
Sbjct: 3   SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDR 37

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 62.3 bits (152), Expect = 3e-11
 Identities = 23/129 (17%), Positives = 39/129 (30%), Gaps = 9/129 (6%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G   ++  ++K A + +  AL         E I    +         +  N      KL 
Sbjct: 200 GVVAFQNGEWKTAEKWFLDAL---------EKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
               AL     A+     N       G  +  + + + AV+ F  AL L  +D      L
Sbjct: 251 KYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTML 310

Query: 339 AVAKKKVSR 347
               +    
Sbjct: 311 GHCIEMYIG 319

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 48.8 bits (117), Expect = 9e-07
 Identities = 18/127 (14%), Positives = 33/127 (25%), Gaps = 25/127 (19%)

Query: 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALR---YLDICWEKEGIDEGKSSSLRKTKSQI 266
             +D +      HY   D+KM  +     +    +   C                     
Sbjct: 20  ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLP------------------- 60

Query: 267 FTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMAL-NDVDAAVESFEKAL 325
                   ++L         +   +     N  + F  G  Y+ + +  + A     KA 
Sbjct: 61  --VHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKAT 118

Query: 326 KLEPNDG 332
            LE   G
Sbjct: 119 TLEKTYG 125

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 45.7 bits (109), Expect = 9e-06
 Identities = 15/115 (13%), Positives = 30/115 (26%), Gaps = 18/115 (15%)

Query: 218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL 277
           +G+    + ++  A+  Y  A +                  L K                
Sbjct: 131 YGHSFAVESEHDQAMAAYFTAAQ------------------LMKGCHLPMLYIGLEYGLT 172

Query: 278 GDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG 332
            + K A      A+    ++   +   G       +   A + F  AL+     G
Sbjct: 173 NNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIG 227

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 45.7 bits (109), Expect = 9e-06
 Identities = 24/117 (20%), Positives = 38/117 (32%), Gaps = 11/117 (9%)

Query: 228 YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDT 287
           Y M   K   A RYL            K+++L KT    +           +   A+   
Sbjct: 100 YLMVGHKNEHARRYLS-----------KATTLEKTYGPAWIAYGHSFAVESEHDQAMAAY 148

Query: 288 EFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344
             A +        +   G  Y   N+   A   F +AL + P D  +  E+ V   +
Sbjct: 149 FTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQ 205

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 61.3 bits (149), Expect = 2e-10
 Identities = 23/147 (15%), Positives = 44/147 (29%), Gaps = 19/147 (12%)

Query: 198 LDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSS 257
           L     +     NA  ++   G  H+ K +   A    ++++                  
Sbjct: 229 LSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL---------------- 272

Query: 258 SLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAA 317
                    +   +       + +      + A+    +     + +GQ Y  L D   A
Sbjct: 273 ---HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNA 329

Query: 318 VESFEKALKLEPNDGGIKKELAVAKKK 344
            E F+KA  L P +     +LA    K
Sbjct: 330 KEDFQKAQSLNPENVYPYIQLACLLYK 356

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 58.2 bits (141), Expect = 1e-09
 Identities = 21/118 (17%), Positives = 39/118 (33%), Gaps = 10/118 (8%)

Query: 219 GNEHYKKQDYKMALRKYRKALR----YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACK 274
                 + D+  A+++Y  A R       I     G   GK++ L        ++    +
Sbjct: 385 AEILTDRGDFDTAIKQYDIAKRLEEVQEKI-HVGIGPLIGKATIL-----ARQSSQDPTQ 438

Query: 275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG 332
           L       A+     A      + +A     Q  + +  +D A+E FE +  L     
Sbjct: 439 LDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMD 496

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 56.3 bits (136), Expect = 5e-09
 Identities = 25/121 (20%), Positives = 47/121 (38%), Gaps = 18/121 (14%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           GN  +  +++  A++ Y+ A+                   L   +   ++N SAC +  G
Sbjct: 32  GNHFFTAKNFNEAIKYYQYAIE------------------LDPNEPVFYSNISACYISTG 73

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
           DL+  +  T  A+    D+ KAL R+  A  +L +   A+            DG   + +
Sbjct: 74  DLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPM 133

Query: 339 A 339
            
Sbjct: 134 L 134

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 20/126 (15%), Positives = 35/126 (27%), Gaps = 18/126 (14%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G  ++  QDYK A   ++KA                   SL       +   +    K G
Sbjct: 317 GQMYFILQDYKNAKEDFQKAQ------------------SLNPENVYPYIQLACLLYKQG 358

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
               +               +      +      D D A++ ++ A +LE     I   +
Sbjct: 359 KFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGI 418

Query: 339 AVAKKK 344
                K
Sbjct: 419 GPLIGK 424

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 53.2 bits (128), Expect = 5e-08
 Identities = 14/113 (12%), Positives = 28/113 (24%), Gaps = 18/113 (15%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
                 K++ +   + ++KA+                   L       + +       L 
Sbjct: 283 ALTLADKENSQEFFKFFQKAV------------------DLNPEYPPTYYHRGQMYFILQ 324

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
           D K A  D + A     +NV    +             +   F +     P  
Sbjct: 325 DYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL 377

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 47.4 bits (113), Expect = 4e-06
 Identities = 14/112 (12%), Positives = 27/112 (24%), Gaps = 16/112 (14%)

Query: 220 NEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD 279
           +      +Y  A      AL+ L                   T       +         
Sbjct: 181 SSVNTSSNYDTAYALLSDALQRLYS----------------ATDEGYLVANDLLTKSTDM 224

Query: 280 LKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
               L          ++   AL   G  +   N++  A    ++++ L P  
Sbjct: 225 YHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTP 276

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 12/105 (11%), Positives = 32/105 (30%), Gaps = 14/105 (13%)

Query: 227 DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLD 286
            +        +             +      S R+  +    N         +   A+  
Sbjct: 2   SHMNGEPDIAQLKG----------LSP----SQRQAYAVQLKNRGNHFFTAKNFNEAIKY 47

Query: 287 TEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
            ++A+    +           Y++  D++  +E   KAL+++P+ 
Sbjct: 48  YQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDH 92

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 58.2 bits (141), Expect = 1e-09
 Identities = 22/154 (14%), Positives = 38/154 (24%), Gaps = 36/154 (23%)

Query: 196 ADLDQ----TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGI 251
             L Q    TP ++    +               +  +  L    +A             
Sbjct: 331 PVLCQAHGLTPQQVVAIAS-------HDGGKQALETVQRLLPVLCQAHG----------- 372

Query: 252 DEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMAL 311
                  L   +     ++   K  L  ++  L     A     + V A+        AL
Sbjct: 373 -------LTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQAL 425

Query: 312 NDVDAAVESFEKALKLEPND-------GGIKKEL 338
             V   +    +A  L P         GG +  L
Sbjct: 426 ETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPAL 459

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 56.7 bits (137), Expect = 4e-09
 Identities = 16/129 (12%), Positives = 29/129 (22%), Gaps = 18/129 (13%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
                  +  +  L    +A                    L   +     ++   K  L 
Sbjct: 283 SGGKQALETVQRLLPVLCQAHG------------------LTPQQVVAIASNGGGKQALE 324

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
            ++  L     A       V A+        AL  V   +    +A  L P         
Sbjct: 325 TVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASN 384

Query: 339 AVAKKKVSR 347
              K+ +  
Sbjct: 385 GGGKQALET 393

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 55.9 bits (135), Expect = 7e-09
 Identities = 18/113 (15%), Positives = 29/113 (25%), Gaps = 18/113 (15%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G      +  +  L    +A                    L   +     +    K  L 
Sbjct: 385 GGGKQALETVQRLLPVLCQAHG------------------LTPEQVVAIASHDGGKQALE 426

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
            ++  L     A       V A+   G    AL  + A +   + AL    ND
Sbjct: 427 TVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTND 479

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 55.9 bits (135), Expect = 7e-09
 Identities = 17/129 (13%), Positives = 30/129 (23%), Gaps = 18/129 (13%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
                  +  +  L    +A                    L   +     +    K  L 
Sbjct: 113 DGGKQALETVQRLLPVLCQAHG------------------LTPEQVVAIASHDGGKQALE 154

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
            ++  L     A     + V A+   G    AL  V   +    +A  L P         
Sbjct: 155 TVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASN 214

Query: 339 AVAKKKVSR 347
              K+ +  
Sbjct: 215 GGGKQALET 223

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 54.4 bits (131), Expect = 2e-08
 Identities = 21/172 (12%), Positives = 40/172 (23%), Gaps = 27/172 (15%)

Query: 196 ADLDQ----TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR----------Y 241
             L Q    TP ++    +        G      +  +  L    +A             
Sbjct: 161 PVLCQAHGLTPEQVVAIAS-------NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIAS 213

Query: 242 LDICWEKEGIDEGKSSSLRKT------KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD 295
                +     +     L +       +     ++   K  L  ++  L     A     
Sbjct: 214 NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 273

Query: 296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVSR 347
             V A+        AL  V   +    +A  L P            K+ +  
Sbjct: 274 QQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALET 325

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 52.8 bits (127), Expect = 6e-08
 Identities = 21/127 (16%), Positives = 33/127 (25%), Gaps = 25/127 (19%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G      +  +  L    +A                    L   +     ++S  K  L 
Sbjct: 249 GGGKQALETVQRLLPVLCQAHG------------------LTPQQVVAIASNSGGKQALE 290

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND------- 331
            ++  L     A       V A+   G    AL  V   +    +A  L P         
Sbjct: 291 TVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASH 350

Query: 332 GGIKKEL 338
            G K+ L
Sbjct: 351 DGGKQAL 357

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 52.4 bits (126), Expect = 9e-08
 Identities = 18/110 (16%), Positives = 28/110 (25%), Gaps = 13/110 (11%)

Query: 222 HYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLK 281
                    A+  +R AL              G   +L   +     +    K  L  ++
Sbjct: 43  KRGGVTAVEAVHAWRNALT-------------GAPLNLTPEQVVAIASHDGGKQALETVQ 89

Query: 282 GALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
             L     A       V A+        AL  V   +    +A  L P  
Sbjct: 90  RLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQ 139

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 58.5 bits (141), Expect = 1e-09
 Identities = 23/154 (14%), Positives = 39/154 (25%), Gaps = 36/154 (23%)

Query: 196 ADLDQ----TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGI 251
             L Q     P+++    +               +  +  L    +A             
Sbjct: 247 PVLCQAHGLPPDQVVAIASN-------IGGKQALETVQRLLPVLCQAH------------ 287

Query: 252 DEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMAL 311
                  L   +     +    K  L  ++  L     A     D V A+        AL
Sbjct: 288 ------GLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQAL 341

Query: 312 NDVDAAVESFEKALKLEPND-------GGIKKEL 338
             V   +    +A  L P+        GG K+ L
Sbjct: 342 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQAL 375

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 58.5 bits (141), Expect = 2e-09
 Identities = 25/159 (15%), Positives = 45/159 (28%), Gaps = 36/159 (22%)

Query: 196 ADLDQ----TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGI 251
             L Q    TP+++    +        G      +  +  L    +A             
Sbjct: 654 PVLCQAHGLTPDQVVAIASN-------GGGKQALETVQRLLPVLCQAHG----------- 695

Query: 252 DEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMAL 311
                  L + +     +++  K  L  ++  L     A     D V A+   G    AL
Sbjct: 696 -------LTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQAL 748

Query: 312 NDVDAAVESFEKALKLEPND-------GGIKKELAVAKK 343
             V   +    +A  L P          G K+ L   ++
Sbjct: 749 ETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQR 787

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 57.3 bits (138), Expect = 3e-09
 Identities = 24/154 (15%), Positives = 42/154 (27%), Gaps = 36/154 (23%)

Query: 196 ADLDQ----TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGI 251
             L Q    TP+++    +        G      +  +  L    +A             
Sbjct: 552 PVLCQAHGLTPDQVVAIASN-------GGGKQALETVQRLLPVLCQAHG----------- 593

Query: 252 DEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMAL 311
                  L + +     ++   K  L  ++  L     A       V A+        AL
Sbjct: 594 -------LTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQAL 646

Query: 312 NDVDAAVESFEKALKLEPND-------GGIKKEL 338
             V   +    +A  L P+        GG K+ L
Sbjct: 647 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQAL 680

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 56.2 bits (135), Expect = 9e-09
 Identities = 17/140 (12%), Positives = 30/140 (21%), Gaps = 25/140 (17%)

Query: 192 PDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGI 251
           P        T  ++    +               +  +  L    +A             
Sbjct: 586 PVLCQAHGLTQVQVVAIASN-------IGGKQALETVQRLLPVLCQAHGL---------- 628

Query: 252 DEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMAL 311
                      +     +    K  L  ++  L     A     D V A+   G    AL
Sbjct: 629 --------TPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQAL 680

Query: 312 NDVDAAVESFEKALKLEPND 331
             V   +    +A  L    
Sbjct: 681 ETVQRLLPVLCQAHGLTQEQ 700

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 55.8 bits (134), Expect = 1e-08
 Identities = 22/156 (14%), Positives = 39/156 (25%), Gaps = 29/156 (18%)

Query: 196 ADLDQ----TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGI 251
             L Q    TP ++    +               +  +  L    +A             
Sbjct: 450 PVLCQTHGLTPAQVVAIASH-------DGGKQALETVQQLLPVLCQAHG----------- 491

Query: 252 DEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMAL 311
                  L   +     ++   K  L  ++  L     A     D V A+   G    AL
Sbjct: 492 -------LTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQAL 544

Query: 312 NDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVSR 347
             V   +    +A  L P+           K+ +  
Sbjct: 545 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALET 580

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 55.4 bits (133), Expect = 2e-08
 Identities = 22/156 (14%), Positives = 39/156 (25%), Gaps = 29/156 (18%)

Query: 196 ADLDQ----TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGI 251
             L Q    TP ++    +               +  +  L    +A             
Sbjct: 213 PVLCQAHGLTPAQVVAIASH-------DGGKQALETMQRLLPVLCQAHG----------- 254

Query: 252 DEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMAL 311
                  L   +     ++   K  L  ++  L     A     D V A+   G    AL
Sbjct: 255 -------LPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQAL 307

Query: 312 NDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVSR 347
             V   +    +A  L P+           K+ +  
Sbjct: 308 ETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALET 343

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 55.0 bits (132), Expect = 2e-08
 Identities = 22/156 (14%), Positives = 37/156 (23%), Gaps = 20/156 (12%)

Query: 192 PDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGI 251
                 L   P  L+     V +I          +  +  L    +A             
Sbjct: 174 HASRNALTGAPLNLT--PAQVVAIASNNGGKQALETVQRLLPVLCQAHG----------- 220

Query: 252 DEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMAL 311
                  L   +     +    K  L  ++  L     A     D V A+        AL
Sbjct: 221 -------LTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQAL 273

Query: 312 NDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVSR 347
             V   +    +A  L P+           K+ +  
Sbjct: 274 ETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALET 309

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 54.3 bits (130), Expect = 3e-08
 Identities = 19/115 (16%), Positives = 34/115 (29%), Gaps = 20/115 (17%)

Query: 231 ALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290
           A+   R AL    +             +L   +     +++  K  L  ++  L     A
Sbjct: 172 AVHASRNALTGAPL-------------NLTPAQVVAIASNNGGKQALETVQRLLPVLCQA 218

Query: 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND-------GGIKKEL 338
                  V A+        AL  +   +    +A  L P+         G K+ L
Sbjct: 219 HGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQAL 273

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 53.1 bits (127), Expect = 8e-08
 Identities = 22/140 (15%), Positives = 37/140 (26%), Gaps = 29/140 (20%)

Query: 196 ADLDQ----TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGI 251
             L Q    TP+++    +        G      +  +  L    +A             
Sbjct: 281 PVLCQAHGLTPDQVVAIASH-------GGGKQALETVQRLLPVLCQAHG----------- 322

Query: 252 DEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMAL 311
                  L   +     +    K  L  ++  L     A     D V A+   G    AL
Sbjct: 323 -------LTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQAL 375

Query: 312 NDVDAAVESFEKALKLEPND 331
             V   +    +A  L P+ 
Sbjct: 376 ETVQRLLPVLCQAHGLTPDQ 395

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 50.8 bits (121), Expect = 4e-07
 Identities = 20/140 (14%), Positives = 35/140 (25%), Gaps = 30/140 (21%)

Query: 196 ADLDQ----TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGI 251
             L Q    TP+++    +        G      +  +  L    +A             
Sbjct: 349 PVLCQAHGLTPDQVVAIAS-------NGGGKQALETVQRLLPVLCQAHG----------- 390

Query: 252 DEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMAL 311
                  L   +     ++   K  L  ++  L     A     D V A+        AL
Sbjct: 391 -------LTPDQVVAIASNGG-KQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQAL 442

Query: 312 NDVDAAVESFEKALKLEPND 331
             V   +    +   L P  
Sbjct: 443 ETVQRLLPVLCQTHGLTPAQ 462

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 48.5 bits (115), Expect = 2e-06
 Identities = 21/136 (15%), Positives = 35/136 (25%), Gaps = 25/136 (18%)

Query: 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTN 269
           + V +I   G      +  +  L    +A                    L   +     +
Sbjct: 529 DQVVAIASNGGGKQALETVQRLLPVLCQAHG------------------LTPDQVVAIAS 570

Query: 270 SSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP 329
           +   K  L  ++  L     A       V A+        AL  V   +    +A  L P
Sbjct: 571 NGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTP 630

Query: 330 ND-------GGIKKEL 338
                     G K+ L
Sbjct: 631 AQVVAIASHDGGKQAL 646

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 41.9 bits (98), Expect = 3e-04
 Identities = 19/110 (17%), Positives = 29/110 (26%), Gaps = 12/110 (10%)

Query: 222 HYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLK 281
                  K AL   ++ L  L            +   L      +   S+  K  L  ++
Sbjct: 874 IASNIGGKQALETVQRLLPVLC-----------QDHGL-TLDQVVAIASNGGKQALETVQ 921

Query: 282 GALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
             L           D V A+        AL  V   +    +   L PN 
Sbjct: 922 RLLPVLCQDHGLTPDQVVAIASNSGGKQALETVQRLLPVLCQDHGLTPNQ 971

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 53.6 bits (129), Expect = 3e-09
 Identities = 17/67 (25%), Positives = 26/67 (38%)

Query: 275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI 334
           LKL +L  A L  E   +   +  +A    G           A+ +   A  L+P D  +
Sbjct: 28  LKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAV 87

Query: 335 KKELAVA 341
              LAV+
Sbjct: 88  HAALAVS 94

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 10/112 (8%), Positives = 30/112 (26%), Gaps = 18/112 (16%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G    K  +   A   +    +                      + + + +    + +  
Sbjct: 24  GLSMLKLANLAEAALAFEAVCQ------------------KEPEREEAWRSLGLTQAENE 65

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN 330
               A++    A      ++        ++   ++ +AA+ S    L  +P 
Sbjct: 66  KDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 38.6 bits (90), Expect = 5e-04
 Identities = 7/35 (20%), Positives = 15/35 (42%)

Query: 297 NVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
             +    +G + + L ++  A  +FE   + EP  
Sbjct: 16  YHENPMEEGLSMLKLANLAEAALAFEAVCQKEPER 50

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 55.7 bits (135), Expect = 4e-09
 Identities = 24/113 (21%), Positives = 42/113 (37%), Gaps = 18/113 (15%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G    KK    +A+++Y+ A+                      T+  ++    +     G
Sbjct: 81  GKILMKKGQDSLAIQQYQAAV------------------DRDTTRLDMYGQIGSYFYNKG 122

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
           +   A+   E  +R    + K  +  GQAY    +   A  SF K L+L+PN 
Sbjct: 123 NFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI 175

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 55.0 bits (133), Expect = 7e-09
 Identities = 14/129 (10%), Positives = 35/129 (27%), Gaps = 21/129 (16%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
            +  +K  +Y  A+  + K                    + +     I+   + C  +L 
Sbjct: 10  ADFLFKNNNYAEAIEVFNKLE------------------AKKYNSPYIYNRRAVCYYELA 51

Query: 279 DLKGALLDTEF---AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIK 335
               A  D E     +             G+  M       A++ ++ A+  +     + 
Sbjct: 52  KYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMY 111

Query: 336 KELAVAKKK 344
            ++      
Sbjct: 112 GQIGSYFYN 120

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 19/153 (12%), Positives = 43/153 (28%), Gaps = 27/153 (17%)

Query: 219 GNEHYKKQDYKMALRKYRKALR----------YLDICWEKEG-IDE-----GKSSSLRKT 262
           G+  Y K ++ +A++   K +R           L   +       +      K   L+  
Sbjct: 115 GSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN 174

Query: 263 KSQIFTNSSACKLKLGDL-----------KGALLDTEFAMRDGDDNVKALFRQGQAYMAL 311
               +   +                    K   +      +  D+ ++A       Y   
Sbjct: 175 IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN 234

Query: 312 NDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344
            D   A  +++  L L+P +      L +  + 
Sbjct: 235 RDKVKADAAWKNILALDPTNKKAIDGLKMKLEH 267

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 12/48 (25%), Positives = 16/48 (33%)

Query: 297 NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344
           N    FR        N+   A+E F K    + N   I    AV   +
Sbjct: 2   NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYE 49

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 54.1 bits (130), Expect = 6e-09
 Identities = 12/67 (17%), Positives = 27/67 (40%)

Query: 275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI 334
               + +  L   +  +R    N +     G+ Y+  ND   ++ ++ +AL+L   +  +
Sbjct: 21  ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAEL 80

Query: 335 KKELAVA 341
              LA  
Sbjct: 81  YAALATV 87

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 46.8 bits (111), Expect = 2e-06
 Identities = 19/134 (14%), Positives = 40/134 (29%), Gaps = 22/134 (16%)

Query: 198 LDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSS 257
           +   P     W          G  +  + DY  +L  YR+AL+             G+++
Sbjct: 37  IRANPQNSEQWAL-------LGEYYLWQNDYSNSLLAYRQALQL-----------RGENA 78

Query: 258 SLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAA 317
            L    + +    +                + A+    + + AL           +   A
Sbjct: 79  ELYAALATVLYYQA----SQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQA 134

Query: 318 VESFEKALKLEPND 331
           +E ++K + L    
Sbjct: 135 IELWQKVMDLNSPR 148

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 52.3 bits (126), Expect = 6e-09
 Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 2/75 (2%)

Query: 275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG-- 332
            +      AL     A+        A    G+      D   A +++E  L    + G  
Sbjct: 30  AEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQ 89

Query: 333 GIKKELAVAKKKVSR 347
            + KEL V  ++++R
Sbjct: 90  QVVKELQVFLRRLAR 104

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 40.4 bits (95), Expect = 9e-05
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN 330
           DN+   F  G+ Y      DAA+     AL  +P 
Sbjct: 17  DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT 51

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 55.6 bits (133), Expect = 1e-08
 Identities = 26/150 (17%), Positives = 53/150 (35%), Gaps = 25/150 (16%)

Query: 198 LDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSS 257
           L+  P   +   N         +   ++   + AL  Y++A+R                 
Sbjct: 36  LEVFPEFAAAHSN-------LASVLQQQGKLQEALMHYKEAIR----------------- 71

Query: 258 SLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAA 317
            +  T +  ++N      ++ D++GAL     A++       A       +    ++  A
Sbjct: 72  -ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEA 130

Query: 318 VESFEKALKLEPNDGGIKKELAVAKKKVSR 347
           + S+  ALKL+P+       LA   + V  
Sbjct: 131 IASYRTALKLKPDFPDAYCNLAHCLQIVCD 160

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 40.6 bits (94), Expect = 7e-04
 Identities = 9/46 (19%), Positives = 17/46 (36%)

Query: 296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341
            +  +L           +++ AV  + KAL++ P        LA  
Sbjct: 7   THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV 52

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 52.2 bits (125), Expect = 1e-08
 Identities = 17/148 (11%), Positives = 39/148 (26%), Gaps = 28/148 (18%)

Query: 183 NFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYL 242
              + G +        + + + L       + +       Y+   Y+ A   ++      
Sbjct: 2   PLGSGGGTIAML---NEISSDTL-------EQLYSLAFNQYQSGXYEDAHXVFQALCV-- 49

Query: 243 DICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALF 302
                           L    S+ F    AC+  +G    A+    +         +  F
Sbjct: 50  ----------------LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPF 93

Query: 303 RQGQAYMALNDVDAAVESFEKALKLEPN 330
              +  +   ++  A      A +L  N
Sbjct: 94  HAAECLLQXGELAEAESGLFLAQELIAN 121

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 45.7 bits (108), Expect = 3e-06
 Identities = 8/73 (10%), Positives = 20/73 (27%)

Query: 275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI 334
            + G  + A    +        + +     G    A+   D A+ S+     ++  +   
Sbjct: 32  YQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRF 91

Query: 335 KKELAVAKKKVSR 347
               A    +   
Sbjct: 92  PFHAAECLLQXGE 104

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 53.7 bits (129), Expect = 4e-08
 Identities = 14/127 (11%), Positives = 34/127 (26%), Gaps = 18/127 (14%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
            +      D        ++ L                   L     +        +    
Sbjct: 30  ADAELGMGDTTAGEMAVQRGLA------------------LHPGHPEAVARLGRVRWTQQ 71

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
               A +  + A     ++       G A       +AA  ++ +A +L P +  I  +L
Sbjct: 72  RHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQL 131

Query: 339 AVAKKKV 345
              ++++
Sbjct: 132 LNWRRRL 138

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 44.1 bits (104), Expect = 5e-05
 Identities = 14/70 (20%), Positives = 22/70 (31%)

Query: 278 GDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKE 337
            D    LL    A+R    +  A      A + + D  A   + ++ L L P        
Sbjct: 3   ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62

Query: 338 LAVAKKKVSR 347
           L   +    R
Sbjct: 63  LGRVRWTQQR 72

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 43.3 bits (102), Expect = 9e-05
 Identities = 19/115 (16%), Positives = 34/115 (29%), Gaps = 18/115 (15%)

Query: 227 DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLD 286
           D    L + R A+R                   R      +   +  +L +GD     + 
Sbjct: 4   DGPRELLQLRAAVR------------------HRPQDFVAWLMLADAELGMGDTTAGEMA 45

Query: 287 TEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341
            +  +     + +A+ R G+          A    ++A    P   GI   L  A
Sbjct: 46  VQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHA 100

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 52.7 bits (127), Expect = 4e-08
 Identities = 21/131 (16%), Positives = 40/131 (30%), Gaps = 18/131 (13%)

Query: 219 GNEHYKKQDYKMALRKYRKALR--------------YLDICWEKEGIDEGKSSSLRKTKS 264
           G   Y     K+A        +                    EK+  +  K    +  K 
Sbjct: 118 GIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE 177

Query: 265 QIFTNSSACKL----KLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVES 320
           Q   N     L    +   ++    D        +   +  F  G+ Y++L D+D+A   
Sbjct: 178 QWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATAL 237

Query: 321 FEKALKLEPND 331
           F+ A+    ++
Sbjct: 238 FKLAVANNVHN 248

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 46.1 bits (110), Expect = 6e-06
 Identities = 21/126 (16%), Positives = 38/126 (30%), Gaps = 19/126 (15%)

Query: 206 SWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQ 265
           SW  +     +V           ++ L +  + L                 +     ++Q
Sbjct: 4   SWRKS-----EVLAVPLQPTLQQEVILARMEQILA--------------SRALTDDERAQ 44

Query: 266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKAL 325
           +          LG    A  D   A+    D  +     G       + DAA E+F+  L
Sbjct: 45  LLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL 104

Query: 326 KLEPND 331
           +L+P  
Sbjct: 105 ELDPTY 110

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 46.1 bits (110), Expect = 6e-06
 Identities = 15/113 (13%), Positives = 30/113 (26%), Gaps = 18/113 (15%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G  +       +A   + +AL                   +R    ++F        + G
Sbjct: 50  GVLYDSLGLRALARNDFSQALA------------------IRPDMPEVFNYLGIYLTQAG 91

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
           +   A    +  +        A   +G A         A +      + +PND
Sbjct: 92  NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND 144

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 53.3 bits (129), Expect = 4e-08
 Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 18/113 (15%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           GN + ++   + A+  YR ALR                  L+      + N +A  +  G
Sbjct: 74  GNVYKERGQLQEAIEHYRHALR------------------LKPDFIDGYINLAAALVAAG 115

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
           D++GA+     A++   D        G    AL  ++ A   + KA++ +PN 
Sbjct: 116 DMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF 168

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 52.5 bits (127), Expect = 7e-08
 Identities = 19/126 (15%), Positives = 39/126 (30%), Gaps = 18/126 (14%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
            N   +K     A   Y  ALR                  L  T +    N +  K + G
Sbjct: 278 ANALKEKGSVAEAEDCYNTALR------------------LCPTHADSLNNLANIKREQG 319

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
           +++ A+     A+    +   A             +  A+  +++A+++ P        +
Sbjct: 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 379

Query: 339 AVAKKK 344
               K+
Sbjct: 380 GNTLKE 385

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 52.5 bits (127), Expect = 8e-08
 Identities = 17/113 (15%), Positives = 37/113 (32%), Gaps = 18/113 (15%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
            +  Y+  D++ A R   +  R                       + +    S+   +  
Sbjct: 6   AHREYQAGDFEAAERHCMQLWR------------------QEPDNTGVLLLLSSIHFQCR 47

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
            L  +   +  A++      +A    G  Y     +  A+E +  AL+L+P+ 
Sbjct: 48  RLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF 100

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 51.4 bits (124), Expect = 2e-07
 Identities = 17/122 (13%), Positives = 44/122 (36%), Gaps = 18/122 (14%)

Query: 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTN 269
           +    + +  + H++ +    +      A++                       ++ ++N
Sbjct: 31  DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK------------------QNPLLAEAYSN 72

Query: 270 SSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP 329
                 + G L+ A+     A+R   D +        A +A  D++ AV+++  AL+  P
Sbjct: 73  LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP 132

Query: 330 ND 331
           + 
Sbjct: 133 DL 134

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 50.6 bits (122), Expect = 3e-07
 Identities = 21/113 (18%), Positives = 36/113 (31%), Gaps = 18/113 (15%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           GN        + A   Y KA+                    +   +  ++N        G
Sbjct: 142 GNLLKALGRLEEAKACYLKAIE------------------TQPNFAVAWSNLGCVFNAQG 183

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
           ++  A+   E A+    + + A    G         D AV ++ +AL L PN 
Sbjct: 184 EIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH 236

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 49.1 bits (118), Expect = 9e-07
 Identities = 21/113 (18%), Positives = 37/113 (32%), Gaps = 18/113 (15%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
                   D + A++ Y  AL+                         + ++       LG
Sbjct: 108 AAALVAAGDMEGAVQAYVSALQ------------------YNPDLYCVRSDLGNLLKALG 149

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
            L+ A      A+    +   A    G  + A  ++  A+  FEKA+ L+PN 
Sbjct: 150 RLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF 202

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 47.5 bits (114), Expect = 3e-06
 Identities = 20/113 (17%), Positives = 35/113 (30%), Gaps = 18/113 (15%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           GN   + + +  A+  Y +AL                  SL    + +  N +    + G
Sbjct: 210 GNVLKEARIFDRAVAAYLRAL------------------SLSPNHAVVHGNLACVYYEQG 251

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
            +  A+     A+        A      A      V  A + +  AL+L P  
Sbjct: 252 LIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 304

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 51.3 bits (123), Expect = 9e-08
 Identities = 24/126 (19%), Positives = 43/126 (34%), Gaps = 24/126 (19%)

Query: 209 MNAVDSIKVF--GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQI 266
           M+ V++I ++  G     K+D+K AL  +                            S+I
Sbjct: 1   MSLVEAISLWNEGVLAADKKDWKGALDAFSAVQ---------------------DPHSRI 39

Query: 267 FTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALK 326
             N       L ++  A      ++        A F++G  Y      D A++  ++AL 
Sbjct: 40  CFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALI 99

Query: 327 -LEPND 331
            L  N 
Sbjct: 100 QLRGNQ 105

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 20/111 (18%), Positives = 37/111 (33%), Gaps = 14/111 (12%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G  +Y+ + Y +A++  ++AL  L      +    G    L     ++  N +    K  
Sbjct: 78  GMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFA--CEVLYNIAFMYAKKE 135

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP 329
           + K A      A     +               + +D A+E   K    EP
Sbjct: 136 EWKKAEEQLALATSMKSEP------------RHSKIDKAMECVWKQKLYEP 174

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 48.7 bits (117), Expect = 7e-07
 Identities = 24/113 (21%), Positives = 40/113 (35%), Gaps = 18/113 (15%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           GN +  K+ YK A   + KALR                         +F       +KL 
Sbjct: 98  GNVYVVKEMYKEAKDMFEKALR------------------AGMENGDLFYMLGTVLVKLE 139

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
             K AL   + A+   +++ +A F+ G        +D A+  F    + +P  
Sbjct: 140 QPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGH 192

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 46.0 bits (110), Expect = 6e-06
 Identities = 20/113 (17%), Positives = 38/113 (33%), Gaps = 18/113 (15%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G    K +  K+AL   ++A+                   L +  ++       C    G
Sbjct: 132 GTVLVKLEQPKLALPYLQRAV------------------ELNENDTEARFQFGMCLANEG 173

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
            L  AL            +  A +  G  Y    + + A+E  +KA+ ++P+ 
Sbjct: 174 MLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDH 226

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 46.0 bits (110), Expect = 7e-06
 Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 25/127 (19%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
                +  DY+ A   + KA+                     K  +  + N +     + 
Sbjct: 30  MGRGSEFGDYEKAAEAFTKAI------------------EENKEDAIPYINFANLLSSVN 71

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND------- 331
           +L+ AL   + A+        A +  G  Y+       A + FEKAL+    +       
Sbjct: 72  ELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYML 131

Query: 332 GGIKKEL 338
           G +  +L
Sbjct: 132 GTVLVKL 138

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 46.0 bits (110), Expect = 7e-06
 Identities = 22/113 (19%), Positives = 38/113 (33%), Gaps = 18/113 (15%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
            N      + + AL  Y KAL                   L  + +  +  +    +   
Sbjct: 64  ANLLSSVNELERALAFYDKAL------------------ELDSSAATAYYGAGNVYVVKE 105

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
             K A    E A+R G +N    +  G   + L     A+   ++A++L  ND
Sbjct: 106 MYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND 158

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 46.1 bits (110), Expect = 7e-07
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI 334
           LK  +   AL   E  +    D V   +  G+ Y  L+  D A++++ + +++   +G  
Sbjct: 18  LKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQ 77

Query: 335 K--KELAVAKKK 344
           K   EL  AK K
Sbjct: 78  KDLSELQDAKLK 89

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 5/35 (14%), Positives = 18/35 (51%)

Query: 296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN 330
           ++    +   Q ++  ++   A+  FE+ ++ +P+
Sbjct: 5   EDPFTRYALAQEHLKHDNASRALALFEELVETDPD 39

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 48.8 bits (117), Expect = 7e-07
 Identities = 14/114 (12%), Positives = 38/114 (33%), Gaps = 16/114 (14%)

Query: 218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL 277
           +G   Y+++ Y+ A ++  +A +                 +L   +S++F N     L++
Sbjct: 111 YGGFLYEQKRYEEAYQRLLEASQ----------------DTLYPERSRVFENLGLVSLQM 154

Query: 278 GDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
                A    E ++R   +                +   A + ++   +    +
Sbjct: 155 KKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN 208

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 23/128 (17%), Positives = 42/128 (32%), Gaps = 20/128 (15%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
                 + + K+A  +YRKAL                  +     +++  N      +  
Sbjct: 78  AVVFQTEMEPKLADEEYRKAL------------------ASDSRNARVLNNYGGFLYEQK 119

Query: 279 DLKGALLDTEFAMRDGD--DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKK 336
             + A      A +D    +  +     G   + +     A E FEK+L+L  N   +  
Sbjct: 120 RYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVAL 179

Query: 337 ELAVAKKK 344
           E+A    K
Sbjct: 180 EMADLLYK 187

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 12/78 (15%), Positives = 25/78 (32%)

Query: 255 KSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDV 314
           K+   R      +       L+ G+ + A +    A+     +  A       +    + 
Sbjct: 28  KTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEP 87

Query: 315 DAAVESFEKALKLEPNDG 332
             A E + KAL  +  + 
Sbjct: 88  KLADEEYRKALASDSRNA 105

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 47.6 bits (112), Expect = 8e-07
 Identities = 18/140 (12%), Positives = 37/140 (26%), Gaps = 17/140 (12%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
                   +Y  A    R+A+        +E  D           +      +     L 
Sbjct: 18  AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDH------AGFDAFCHAGLAEALAGLR 71

Query: 279 DLKGALLDTEFAMR-----------DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL 327
               AL   + A+            +G   + A++ +  A   L     A+  F+K +++
Sbjct: 72  SFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131

Query: 328 EPNDGGIKKELAVAKKKVSR 347
                G         +    
Sbjct: 132 IEERKGETPGKERMMEVAID 151

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 8e-07
 Identities = 55/404 (13%), Positives = 110/404 (27%), Gaps = 129/404 (31%)

Query: 25  YNDVIPKTAENF-------------RALCTGE--KGIGPNTGVPLHYKGVRF-------- 61
           Y D++    + F             +++ + E    I           G           
Sbjct: 18  YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI---IMSKDAVSGTLRLFWTLLSK 74

Query: 62  -HRVIKGFMIQGGDISAGDGTGGESIYGL---KFEDENFELKHERKGMLSMANAGPNTNG 117
              +++ F+    ++   +       Y       + E  +     +  +   +     N 
Sbjct: 75  QEEMVQKFV---EEVLRIN-------YKFLMSPIKTEQRQPSMMTRMYIEQRD--RLYND 122

Query: 118 SQFFI--TTTR-------TSHL----DGKHVVFGRVIKGMG----------VVRS--IEH 152
           +Q F     +R          L      K+V+    I G+           V  S  ++ 
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVL----IDGVLGSGKTWVALDVCLSYKVQC 178

Query: 153 VMTGDNDCPIADVTITDCGEIPEGADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAV 212
            M    D  I  + + +C   PE   + +       D  P+W +  D + N         
Sbjct: 179 KM----DFKIFWLNLKNCNS-PETVLEMLQKLLYQID--PNWTSRSDHSSN--------- 222

Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGID--EGKSSSLRKTKSQIFTNS 270
             IK+  +    +    +  + Y   L  L      +  +        L  T+ +  T+ 
Sbjct: 223 --IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF 280

Query: 271 ----SACKLKLGDLKGALLDTE----FA----MRDGD-------------DNVKALFRQG 305
               +   + L      L   E           R  D               +    R G
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340

Query: 306 QA------YMALNDVDAAVESFEKALKLEPNDGGIKK---ELAV 340
            A      ++  + +   +ES      LEP +   +K    L+V
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNV--LEPAE--YRKMFDRLSV 380

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 17/134 (12%), Positives = 38/134 (28%), Gaps = 18/134 (13%)

Query: 202 PNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR----YLDICWEKEGIDEGKSS 257
           P +++               H  + +   AL   R  L     Y  +             
Sbjct: 86  PKDIAVHAA-------LAVSHTNEHNANAALASLRAWLLSQPQYEQLG-------SVNLQ 131

Query: 258 SLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAA 317
           +          +         + +        A+    ++ +     G  Y   N+ D+A
Sbjct: 132 ADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSA 191

Query: 318 VESFEKALKLEPND 331
             +  +A++L P+D
Sbjct: 192 AANLRRAVELRPDD 205

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 17/73 (23%), Positives = 26/73 (35%)

Query: 275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI 334
           LKL +L  A L  E   +   +  +A    G           A+ +   A  L+P D  +
Sbjct: 32  LKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAV 91

Query: 335 KKELAVAKKKVSR 347
              LAV+      
Sbjct: 92  HAALAVSHTNEHN 104

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 9/54 (16%), Positives = 19/54 (35%)

Query: 278 GDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
           G +     D  F   +     +    +G + + L ++  A  +FE   +  P  
Sbjct: 1   GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPER 54

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 43.9 bits (104), Expect = 5e-06
 Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 3/74 (4%)

Query: 277 LGDLKGALLDTEFAMR---DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG 333
           LG    A+   E A+     G D  +     G  +  L +   A       +K  PN   
Sbjct: 3   LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA 62

Query: 334 IKKELAVAKKKVSR 347
           ++   A+    + R
Sbjct: 63  LRVFYAMVLYNLGR 76

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 41.2 bits (97), Expect = 5e-05
 Identities = 16/110 (14%), Positives = 30/110 (27%), Gaps = 15/110 (13%)

Query: 227 DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLD 286
               A+  Y KA+       +      G  S+ R                LG+ + A   
Sbjct: 5   LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRT---------------LGEYRKAEAV 49

Query: 287 TEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKK 336
               ++   ++             L   +  VE   K +    +D  I+ 
Sbjct: 50  LANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQS 99

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 46.9 bits (111), Expect = 6e-06
 Identities = 24/133 (18%), Positives = 44/133 (33%), Gaps = 19/133 (14%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
               + K   + AL   RKA          E I +  +          + N +     +G
Sbjct: 58  AYLKHLKGQNEAALECLRKAE---------ELIQQEHADQAEIRSLVTWGNYAWVYYHMG 108

Query: 279 DLKGAL--------LDTEFAMRDGDDNVKALFRQGQAYMAL--NDVDAAVESFEKALKLE 328
            L            +  +F+     ++ +    +G   +    N  + A   FEKAL+ +
Sbjct: 109 RLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK 168

Query: 329 PNDGGIKKELAVA 341
           P +      LA+A
Sbjct: 169 PKNPEFTSGLAIA 181

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 46.1 bits (109), Expect = 1e-05
 Identities = 19/124 (15%), Positives = 36/124 (29%), Gaps = 21/124 (16%)

Query: 219 GNEHYKKQDYKMALRKYRKALR----------YLDICWEKEGIDEGKSSSLRKTKSQIFT 268
              + +K +   A+   +KAL            +  C+  +                   
Sbjct: 254 AKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRE---------- 303

Query: 269 NSSACKLKLGDLKG-ALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL 327
           N    K KL +L G A+   + A    D+  +        +   +  + A   F+K    
Sbjct: 304 NGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363

Query: 328 EPND 331
           E   
Sbjct: 364 ELTP 367

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 19/146 (13%), Positives = 44/146 (30%), Gaps = 24/146 (16%)

Query: 202 PNELSWWMNAVDSIKVFGNEHYKKQDYKM---ALRKYRKALRYLDICWEKEGIDEGKSSS 258
           P    +               Y+  ++     A+   R+A+R               +  
Sbjct: 169 PKNPEFTSG-------LAIASYRLDNWPPSQNAIDPLRQAIRL--------------NPD 207

Query: 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAV 318
            +  K  +       + +  +        E A+         L    + Y   ++ D A+
Sbjct: 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAI 267

Query: 319 ESFEKALKLEPNDGGIKKELAVAKKK 344
           E  +KAL+  PN+  +  ++    + 
Sbjct: 268 ELLKKALEYIPNNAYLHCQIGCCYRA 293

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 43.8 bits (103), Expect = 5e-05
 Identities = 23/121 (19%), Positives = 46/121 (38%), Gaps = 8/121 (6%)

Query: 232 LRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG--DLKGALLDTEF 289
           + +      Y+D       + E  SS  R    ++       +LK G    + A +  E 
Sbjct: 107 MGRLSDVQIYVDKVKH---VCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEK 163

Query: 290 AMRDGDDNVKALFRQGQAYMALND---VDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346
           A+     N +       A   L++      A++   +A++L P++  +K  LA+   K+ 
Sbjct: 164 ALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMR 223

Query: 347 R 347
            
Sbjct: 224 E 224

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 41.5 bits (97), Expect = 3e-04
 Identities = 15/127 (11%), Positives = 33/127 (25%), Gaps = 18/127 (14%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGI---------DEGKS-----SSLRKTKS 264
            + H     Y+ A   ++K          K+ +          + K          +   
Sbjct: 341 ASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEG-V 399

Query: 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKA 324
           +I   S   +     L+      +  +     + +AL            +  A E  E+ 
Sbjct: 400 KINQKSREKEKMKDKLQKIA---KMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERG 456

Query: 325 LKLEPND 331
           L+     
Sbjct: 457 LESGSLI 463

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 45.3 bits (108), Expect = 7e-06
 Identities = 18/133 (13%), Positives = 30/133 (22%), Gaps = 19/133 (14%)

Query: 218 FGNEHYKKQDYKMALRKYRKALR----YLDI--------CWEKEGIDEGKSS-------S 258
               +   +    A   +R+AL       +I        C       E  +         
Sbjct: 48  RAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADP 107

Query: 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAV 318
              T      N   C  K G    A    + ++        A     +  M    +  A 
Sbjct: 108 TYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDAD 167

Query: 319 ESFEKALKLEPND 331
             F+K        
Sbjct: 168 YYFKKYQSRVEVL 180

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 19/76 (25%), Positives = 32/76 (42%)

Query: 257 SSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDA 316
           +      S I T  +   ++  D + A    E A++    N  A   + + Y  L   D 
Sbjct: 1   AEKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDK 60

Query: 317 AVESFEKALKLEPNDG 332
           A ESF +AL ++P+  
Sbjct: 61  AQESFRQALSIKPDSA 76

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 43.0 bits (102), Expect = 5e-05
 Identities = 25/145 (17%), Positives = 47/145 (32%), Gaps = 19/145 (13%)

Query: 219 GNEHYKKQDYKMALRKYRKALRY----------LDICWEKEG-IDEGKSS-----SLRKT 262
             E+ + QDY+ A      AL+               ++     D+ + S     S++  
Sbjct: 15  AMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD 74

Query: 263 KSQIFTN-SSACKLKLGDLKGALLDTEFAMRDGD--DNVKALFRQGQAYMALNDVDAAVE 319
            ++I  N       +L     ++   + A+ D        A   +G           A  
Sbjct: 75  SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEA 134

Query: 320 SFEKALKLEPNDGGIKKELAVAKKK 344
             +++L  +P      KELA  K  
Sbjct: 135 YLKRSLAAQPQFPPAFKELARTKML 159

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 43.1 bits (102), Expect = 8e-06
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 275 LKLGDLKGALLDTEFAMR-DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
           +  GD++ AL   E  ++ +     +A +  G AY  L D   A+ +++ A++L P+ 
Sbjct: 11  INQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 46.2 bits (110), Expect = 8e-06
 Identities = 16/57 (28%), Positives = 28/57 (49%)

Query: 275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
           LK GDL   +L  E A+     + +A    G       +  AA+ + ++ L+L+PN+
Sbjct: 76  LKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNN 132

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 28/141 (19%)

Query: 219 GNEHYKKQDYKMALRKYRKALR----YLD------ICWEKEGIDEGKSSSLRKTKS---- 264
           G    + ++ + A+   ++ L      L       + +      +    +L+        
Sbjct: 106 GITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPK 165

Query: 265 --QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQ------------GQAYMA 310
              +  N          +  + +D+       +  ++A  +             G  +  
Sbjct: 166 YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL 225

Query: 311 LNDVDAAVESFEKALKLEPND 331
             + + A+++F  AL + P D
Sbjct: 226 SGEFNRAIDAFNAALTVRPED 246

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 16/129 (12%), Positives = 41/129 (31%), Gaps = 18/129 (13%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G +  K+ D  + +     A+                        ++ +      + +  
Sbjct: 72  GLKRLKEGDLPVTILFMEAAIL------------------QDPGDAEAWQFLGITQAENE 113

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
           + + A++  +  +    +N+KAL     +Y   +    A E+ +  +K  P    + K  
Sbjct: 114 NEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNK 173

Query: 339 AVAKKKVSR 347
             +     R
Sbjct: 174 KGSPGLTRR 182

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 8/54 (14%), Positives = 18/54 (33%)

Query: 278 GDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
             +  +     F   +   +    F +G   +   D+   +   E A+  +P D
Sbjct: 45  VTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGD 98

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 17/123 (13%), Positives = 39/123 (31%), Gaps = 18/123 (14%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G   +   ++  A+  +  AL                  ++R     ++    A      
Sbjct: 220 GVLFHLSGEFNRAIDAFNAAL------------------TVRPEDYSLWNRLGATLANGD 261

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
             + A+     A+      +++ +  G + + L     AV +F  AL L+      ++  
Sbjct: 262 RSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVP 321

Query: 339 AVA 341
             A
Sbjct: 322 HPA 324

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 45.7 bits (108), Expect = 9e-06
 Identities = 13/116 (11%), Positives = 31/116 (26%), Gaps = 18/116 (15%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
             +  +  D   A+  Y++A    +        +E +     +   +     S   ++  
Sbjct: 122 AGKLMEPLDLSKAVHLYQQAAAVFE--------NEERLRQAAELIGKA----SRLLVRQQ 169

Query: 279 DLKGAL------LDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE 328
               A             M +     K    Q    +   D  AA +   ++  + 
Sbjct: 170 KFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIP 225

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 46.2 bits (109), Expect = 1e-05
 Identities = 24/144 (16%), Positives = 48/144 (33%), Gaps = 25/144 (17%)

Query: 210 NAVDSIKVFGNEHYKKQDYKMALRK-------YRKALRYLDICWEKEGIDEGKSSSLRKT 262
             VD +  F + +++    + A RK         K L+ ++           +     + 
Sbjct: 52  GLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQME-----------EVLGSAQV 100

Query: 263 KSQIFTNSSACKLKLGD-LKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESF 321
           ++Q             D    A +    A++   + V+A  + G+ Y    DV +A   F
Sbjct: 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCF 160

Query: 322 EKALKLEPND------GGIKKELA 339
             AL    N         + ++L 
Sbjct: 161 SGALTHCKNKVSLQNLSMVLRQLQ 184

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 40.4 bits (94), Expect = 6e-04
 Identities = 25/164 (15%), Positives = 43/164 (26%), Gaps = 35/164 (21%)

Query: 219 GNEHYKKQDYKMALRKYRKALRY---------LDICWEKEGIDEGKSSSLRKTKS----- 264
           G  ++KK D   A   +  AL +         L +   +   D G   S     S     
Sbjct: 144 GEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAK 203

Query: 265 ---------------------QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFR 303
                                 ++ N+            A    E   R    N      
Sbjct: 204 LAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLN 263

Query: 304 QGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVSR 347
           +   +        A+E F +A  L+P     ++      + +SR
Sbjct: 264 RATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSR 307

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 40.4 bits (94), Expect = 7e-04
 Identities = 17/146 (11%), Positives = 36/146 (24%), Gaps = 27/146 (18%)

Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALR-----------YLDICWEKEGIDEGKSSSLRK 261
                   +   +++ +  L++  + L                              L K
Sbjct: 69  SVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSK 128

Query: 262 ------TKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMAL---- 311
                    + +        K GD+  A      A+     N  +L         L    
Sbjct: 129 AVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH-CKNKVSLQNLSMVLRQLQTDS 187

Query: 312 -----NDVDAAVESFEKALKLEPNDG 332
                  V  +V   + A++++  DG
Sbjct: 188 GDEHSRHVMDSVRQAKLAVQMDVLDG 213

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 40.0 bits (93), Expect = 8e-04
 Identities = 23/132 (17%), Positives = 36/132 (27%), Gaps = 7/132 (5%)

Query: 220 NEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKL--KL 277
             H         + +        +         +G    L   +   F   S      K 
Sbjct: 18  GSHMASMTGGQQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQ 77

Query: 278 GDLKG----ALLDTEFAMRDGDDNVKALFRQGQAYMALNDVD-AAVESFEKALKLEPNDG 332
            D++      L   E  +       +AL  +G+A     D    A     KA+KLEP   
Sbjct: 78  QDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELV 137

Query: 333 GIKKELAVAKKK 344
               +L     K
Sbjct: 138 EAWNQLGEVYWK 149

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 45.1 bits (106), Expect = 2e-05
 Identities = 20/120 (16%), Positives = 35/120 (29%), Gaps = 16/120 (13%)

Query: 222 HYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLK 281
             K     +A ++ +K              DE        T +Q+ T   +       L+
Sbjct: 140 LLKLDRLDLARKELKKMQD----------QDE------DATLTQLATAWVSLAAGGEKLQ 183

Query: 282 GALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341
            A    +         +  L  Q   +MA    +AA    ++AL  +         L V 
Sbjct: 184 DAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVL 243

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 24/138 (17%), Positives = 48/138 (34%), Gaps = 18/138 (13%)

Query: 195 PADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDY-KMALRKYRKALRYLDICWEKEGIDE 253
            +D+D      +         K     H    DY  +    Y K  ++            
Sbjct: 11  ESDVDFWDKLQAELEEM---AKRDAEAHPWLSDYDDLTSATYDKGYQF------------ 55

Query: 254 GKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALND 313
            +  +  +   Q F      +L+ GDL  A+L  E A++    +++A    G        
Sbjct: 56  -EEENPLRDHPQPF-EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113

Query: 314 VDAAVESFEKALKLEPND 331
              A+ +  + L+L+P++
Sbjct: 114 ELLAISALRRCLELKPDN 131

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 20/125 (16%), Positives = 37/125 (29%), Gaps = 18/125 (14%)

Query: 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFT 268
           +  +    +F       + Y+ A+  ++KA        E E   +    +L         
Sbjct: 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMA----EAEKQPQLMGRTLY-------- 228

Query: 269 NSSACKLKLGDLKGAL------LDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFE 322
           N   CK      + A+      +             +A F   Q +  L  +D A E   
Sbjct: 229 NIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHS 288

Query: 323 KALKL 327
           K +  
Sbjct: 289 KGMAY 293

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 43.3 bits (102), Expect = 8e-05
 Identities = 20/114 (17%), Positives = 31/114 (27%), Gaps = 17/114 (14%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
              +   + Y  AL     AL            D   + SL         N +    + G
Sbjct: 189 AGNYDDFKHYDKALPHLEAALELA----MDIQNDRFIAISL--------LNIANSYDRSG 236

Query: 279 DLKGALLDTEFAMR-----DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL 327
           D + A+   + A +       D   K LF              A +  E+ L  
Sbjct: 237 DDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 41.7 bits (99), Expect = 9e-05
 Identities = 20/113 (17%), Positives = 32/113 (28%), Gaps = 18/113 (15%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G  H K   Y  A+    +                            +  +     +K G
Sbjct: 15  GISHAKAGRYSQAVMLLEQVY------------------DADAFDVDVALHLGIAYVKTG 56

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
            +       E ++ D  DNVK     G  Y+ +   D AV    K  +  P +
Sbjct: 57  AVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN 109

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 41.3 bits (98), Expect = 1e-04
 Identities = 20/113 (17%), Positives = 34/113 (30%), Gaps = 18/113 (15%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G  + K            ++L                  +      ++ T      +++ 
Sbjct: 49  GIAYVKTGAVDRGTELLERSL------------------ADAPDNVKVATVLGLTYVQVQ 90

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
               A+            N    FR G A   L   D A++SF+ AL L PN+
Sbjct: 91  KYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE 143

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 40.5 bits (96), Expect = 3e-04
 Identities = 16/113 (14%), Positives = 32/113 (28%), Gaps = 18/113 (15%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G  + + Q Y +A+    K                            +          LG
Sbjct: 83  GLTYVQVQKYDLAVPLLIKVA------------------EANPINFNVRFRLGVALDNLG 124

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
               A+   + A+    +  K       +Y  +   + A+  F+KA +L+   
Sbjct: 125 RFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA 177

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 276 KLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
            LG+   A    + A+   +D  +      + Y+++  +D A+  + KAL+  P D
Sbjct: 130 LLGERDKAEASLKQALA-LEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKD 184

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 40.2 bits (95), Expect = 4e-04
 Identities = 14/36 (38%), Positives = 17/36 (47%)

Query: 296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
              +   R G    AL   DAA+  FE+ALK  P D
Sbjct: 3   TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQD 38

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 39.4 bits (93), Expect = 7e-04
 Identities = 14/112 (12%), Positives = 30/112 (26%), Gaps = 19/112 (16%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G  +    +   A    ++AL                     +   +I +  +   L +G
Sbjct: 125 GLVYALLGERDKAEASLKQALAL-------------------EDTPEIRSALAELYLSMG 165

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN 330
            L  AL     A+     ++    R   A +     + A  +         +
Sbjct: 166 RLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHHHH 217

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 14/118 (11%), Positives = 31/118 (26%), Gaps = 23/118 (19%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G  +     +  A   ++          +K G    +  +L              +   G
Sbjct: 33  GYVYAFMDRFDEARASFQAL---QQQA-QKSGDHTAEHRALH--------QVGMVERMAG 80

Query: 279 DLKGAL------LDTEFAMRDGDDNVK---ALFRQGQAYMALNDVDAAVESFEKALKL 327
           +   A          E      +D +      +      +   D+  A + +EK+L  
Sbjct: 81  NWDAARRCFLEER--ELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVY 136

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 39.0 bits (92), Expect = 2e-04
 Identities = 9/37 (24%), Positives = 20/37 (54%)

Query: 295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
           D N +  + +G       +   +++ FEKA++L+P +
Sbjct: 3   DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE 39

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 38.2 bits (90), Expect = 6e-04
 Identities = 9/59 (15%), Positives = 25/59 (42%)

Query: 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
            +   G+   ++   E A++   +  K    +G+A   L   + AV+ +   + +  ++
Sbjct: 15  LQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDE 73

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 37.8 bits (89), Expect = 6e-04
 Identities = 17/115 (14%), Positives = 34/115 (29%), Gaps = 20/115 (17%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G   Y   +Y  ++  + KA+                   L   +S+ +         L 
Sbjct: 13  GVLQYDAGNYTESIDLFEKAI------------------QLDPEESKYWLMKGKALYNLE 54

Query: 279 DLKGALLDTEFAMRDGDD--NVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
             + A+    + +   +D  N      +  A   +   +   E  E   KLE + 
Sbjct: 55  RYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 38.9 bits (92), Expect = 5e-04
 Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 18/112 (16%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           GN +YK+ DY  A+  Y+KAL                   L    ++ + N      K G
Sbjct: 8   GNAYYKQGDYDEAIEYYQKAL------------------ELDPRSAEAWYNLGNAYYKQG 49

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN 330
           D   A+   + A+     + +A +  G AY    D D A+E ++KAL+L+P 
Sbjct: 50  DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 101

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 38.9 bits (92), Expect = 5e-04
 Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 18/112 (16%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           GN +YK+ DY  A+  Y+KAL                   L    ++ + N      K G
Sbjct: 42  GNAYYKQGDYDEAIEYYQKAL------------------ELDPRSAEAWYNLGNAYYKQG 83

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN 330
           D   A+   + A+     + +A +  G AY    D D A+E ++KAL+L+P 
Sbjct: 84  DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 40.0 bits (94), Expect = 9e-04
 Identities = 21/115 (18%), Positives = 42/115 (36%), Gaps = 18/115 (15%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           GN H     ++ A   Y++ L    +   + G  E ++ S          +       L 
Sbjct: 270 GNSHIFLGQFEDAAEHYKRTL---AL-AVELGEREVEAQSCY--------SLGNTYTLLH 317

Query: 279 DLKGAL------LDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL 327
           +   A+      L     + D     +A +  G A+ A+   + A++  E+ L+L
Sbjct: 318 EFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	347
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	100.0
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	100.0
2igv_A	173	Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1	100.0
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	100.0
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	100.0
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
1qng_A	170	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
2z6w_A	165	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	100.0
2cmt_A	172	Peptidyl-prolyl CIS-trans isomerase E; rotamase ac	100.0
2r99_A	173	Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i	100.0
2haq_A	172	Cyclophilin; rotamase, proline, isomerase, CIS-tra	100.0
3pmp_A	164	Cyclophilin A; peptidyl prolyl isomerase, isomeras	100.0
1z81_A	229	Cyclophilin; structural genomics, structural genom	100.0
3ich_A	188	Peptidyl-prolyl CIS-trans isomerase B; beta sandwi	100.0
3rdd_A	184	Peptidyl-prolyl CIS-trans isomerase A; beta barrel	100.0
4fru_A	185	Cyclophilin B, peptidyl-prolyl CIS-trans isomerase	100.0
3k2c_A	193	Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH,	100.0
2c3b_A	172	Ppiase, cyclophilin; isomerase, 3D domain swapping	100.0
2ose_A	234	Probable peptidyl-prolyl CIS-trans isomerase; cycl	100.0
2x7k_A	166	Peptidyl-prolyl CIS-trans isomerase-like 1; isomer	100.0
2ok3_A	161	Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b	100.0
2poe_A	185	Cyclophilin-like protein, putative; cryptosporidiu	100.0
2b71_A	196	Cyclophilin-like protein; structural genomics, str	100.0
2fu0_A	160	Cyclophilin, putative; PFE0505W, cyclosporin-bindi	100.0
1zkc_A	197	Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr	100.0
2k7n_A	203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	100.0
2a2n_A	176	Peptidylprolyl isomerase domain and WD repeat CON;	100.0
3bo7_A	201	Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;	100.0
1w74_A	191	Peptidyl-prolyl CIS-trans isomerase A; cyclophilin	100.0
2hq6_A	185	Serologically defined colon cancer antigen 10; pro	100.0
1v9t_A	166	Cyclophilin B; beta barrel, isomerase-isomerase in	100.0
3bkp_A	232	Cyclophilin; malaria, isomerase, structural GENO s	100.0
3s6m_A	167	Peptidyl-prolyl CIS-trans isomerase; seattle struc	100.0
1lop_A	164	Cyclophilin A; rotamase, isomerase-isomerase inhib	100.0
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	100.0
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.87
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.85
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.83
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.79
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.78
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.75
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.72
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.72
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.72
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.71
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.71
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.71
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.7
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.7
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.68
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.65
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.65
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.65
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.64
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.63
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.62
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.62
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.61
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.61
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.61
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.61
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.59
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.59
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.59
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.58
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.58
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.57
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.56
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.55
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.55
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.55
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.54
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.53
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.51
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.5
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.5
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.5
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.5
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.48
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.46
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.45
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.44
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.43
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.42
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.42
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.41
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.41
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.4
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.39
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.38
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.38
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.38
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.38
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.37
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.37
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.36
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.36
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.36
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.36
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.36
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.36
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.35
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.35
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.35
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.34
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.34
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.34
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.33
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.33
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.32
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.32
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.32
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.32
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.32
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.32
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.31
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.31
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.31
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.31
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.3
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.3
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.3
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.3
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.29
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.28
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.28
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.28
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.28
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.27
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.27
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.26
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.26
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.26
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.25
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.24
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.23
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.22
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.22
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.21
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.21
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.21
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.2
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.2
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.2
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.19
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.17
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.17
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.16
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.15
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.15
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.15
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.14
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.14
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.13
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.13
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.12
1pc2_A	152	Mitochondria fission protein; unknown function; NM	99.12
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.1
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.1
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.09
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.09
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.08
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.08
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.07
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.07
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.07
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.06
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.06
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.06
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.05
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.04
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.04
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.03
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.02
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.02
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.01
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.01
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.0
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.0
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.99
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.99
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.99
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.99
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.99
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.99
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.97
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.97
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.96
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.96
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.95
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.95
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.95
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.94
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.93
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.92
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.92
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.91
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.91
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.91
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.91
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.91
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.91
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.9
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.88
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.88
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.88
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.88
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.87
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.87
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.86
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.85
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.85
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.84
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.79
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.78
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.77
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.74
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.73
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.72
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.71
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.71
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.7
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.69
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.65
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.64
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.62
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.62
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.52
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.49
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.48
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.42
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.41
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.4
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.36
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.35
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.33
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.24
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	98.23
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.21
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.19
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.18
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.16
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.08
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.02
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.02
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.98
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.97
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.93
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.92
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.87
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.82
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.6
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.59
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.43
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	97.36
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.35
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.23
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.2
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.9
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	96.73
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	96.69
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.48
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	95.98
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	95.84
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	95.03
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	94.77
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	94.66
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	94.37
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	94.07
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	93.7
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	93.23
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	92.59
3kop_A	188	Uncharacterized protein; protein with A cyclophili	92.46
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	91.81
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	91.7
3mv2_A	325	Coatomer subunit alpha; vesicular membrane coat CO	90.43
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	90.38
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	90.27
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	90.24
3mkr_B	320	Coatomer subunit alpha; tetratricopeptide repeats	90.09
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	89.61
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	88.8
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	88.45
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	86.88
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	86.3
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	86.24
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	85.84
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	84.23
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	84.11
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	83.73
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	82.24
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	81.59
2dl1_A	116	Spartin; SPG20, MIT, structural genomics, NPPSFA,	81.04
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	80.9

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=100.00  E-value=4.4e-73  Score=529.96  Aligned_cols=341  Identities=49%  Similarity=0.824  Sum_probs=314.4

Q ss_pred             CCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCC
Q 019054            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG   82 (347)
Q Consensus         3 ~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~   82 (347)
                      ||+|||||+|+|++.|+|+||||++.||+||+||++||++.++.+...|+++||+||.||||||||||||||++.++|+|
T Consensus        15 ~~~v~~~~~~~~~~~G~i~~~l~~~~~P~t~~nf~~l~~~~~~~~~~~g~~~~y~~~~fhrv~~~f~~q~Gd~~~~~g~g   94 (370)
T 1ihg_A           15 NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTG   94 (370)
T ss_dssp             SCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEETTTEEEECCTTTSSSSC
T ss_pred             CCeEEEEEEECCEecccEEEEEcCCCCchHHHHHHHHcCCCcCcCccCCCcceeCCcEeEEEECCcEEECCCCCCCCCCC
Confidence            89999999999999999999999999999999999999998877666688889999999999999999999999889999


Q ss_pred             CCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCccc
Q 019054           83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI  162 (347)
Q Consensus        83 ~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P~  162 (347)
                      ++|+||.+|+||++.++|+++|+|||+|.||||+|||||||+.+.|+||++|+|||+|++|++++++|+.++++. ++|.
T Consensus        95 ~~~~~~~~~~~e~~~~~~~~~g~l~ma~~~~~~~~sqffi~~~~~~~ld~~~~vfG~v~~g~~v~~~i~~~~~~~-~~P~  173 (370)
T 1ihg_A           95 GESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKG-EKPA  173 (370)
T ss_dssp             CCBTTBSCBCCCCCCBCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEET-TEES
T ss_pred             CCCCCCCCcCCCcCCcCCCCCeEEEEeeCCCCCCCceEEEeCCCCcccCCCceEEEEEecCHHHHHHHHcCCCCC-Cccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998877 8999


Q ss_pred             cceEeccceecCCCCCCCCCCcCCCCCCCCCCCCCCCCCcchhHHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHh
Q 019054          163 ADVTITDCGEIPEGADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYL  242 (347)
Q Consensus       163 ~~v~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~  242 (347)
                      .+|.|.+|+++....++.+...+..++.+++++.++.....+.+...+.+..++.+|+.+++.|+|++|+..|++|+++.
T Consensus       174 ~~v~I~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~  253 (370)
T 1ihg_A          174 KLCVIAECGELKEGDDWGIFPKDGSGDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV  253 (370)
T ss_dssp             SCEEEEEEEEECTTCCCCCSCCSSSCCCSCSSGGGSSSCTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             eeEEEEEEEEeccCccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence            99999999999887777776666788999999999876666788888899999999999999999999999999999976


Q ss_pred             hhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 019054          243 DICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFE  322 (347)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~  322 (347)
                      +...  .....+......+....+|.|+|.||+++++|++|+.+|++|++++|+++++++++|.+|..+|++++|+.+|+
T Consensus       254 ~~~~--~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~  331 (370)
T 1ihg_A          254 EGSR--AAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLK  331 (370)
T ss_dssp             HHHH--HHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hcCc--cccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            5432  11223334457888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          323 KALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       323 ~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      +|++++|++..++..+..+...++
T Consensus       332 ~Al~l~P~~~~~~~~l~~~~~~~~  355 (370)
T 1ihg_A          332 KAQEIAPEDKAIQAELLKVKQKIK  355 (370)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999998877653

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A*

Probab=100.00  E-value=2.1e-55  Score=363.41  Aligned_cols=171  Identities=59%  Similarity=1.014  Sum_probs=163.7

Q ss_pred             CCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCC
Q 019054            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG   82 (347)
Q Consensus         3 ~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~   82 (347)
                      ||+|||||+|++++.|+|+||||++.||+||+||++||++.++.+...|+++||+||.||||+|+|||||||++.++|+|
T Consensus         6 ~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~~~~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~g   85 (177)
T 1a58_A            6 RRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGTG   85 (177)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCCCTTCBEEEEETTTEEEECCCSSSSSSC
T ss_pred             CcEEEEEEEECCEeceeEEEEEcCCCCchHHHHHHHHhcCCcCcccccCCcceeCCCEEEEEECCCEEEeCCccCCCCCC
Confidence            79999999999999999999999999999999999999987766544567789999999999999999999998889999


Q ss_pred             CCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCccc
Q 019054           83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI  162 (347)
Q Consensus        83 ~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P~  162 (347)
                      ++|+||..|+||++.++|+++|+|||||.+|||++|||||++.+.|+||++|+|||+|++||+++++|+.++++.+++|.
T Consensus        86 g~si~g~~f~dE~~~~~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~~~~~~~P~  165 (177)
T 1a58_A           86 GESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPL  165 (177)
T ss_dssp             CCCTTSSCBCCCCCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBS
T ss_pred             CCcccCCcccCcccCcccCCCeEEEEeeCCCCCceeEEEEECCCCCccCCCEEEEEEEEcCHHHHHHHHhCCCCCCCcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999889999


Q ss_pred             cceEeccceec
Q 019054          163 ADVTITDCGEI  173 (347)
Q Consensus       163 ~~v~I~~~g~~  173 (347)
                      .+|.|.+|+.+
T Consensus       166 ~~v~I~~~G~l  176 (177)
T 1a58_A          166 ADVVILNCGEL  176 (177)
T ss_dssp             SCEEEEEEEEE
T ss_pred             CCeEEEEeEEE
Confidence            99999999986

>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A

Probab=100.00  E-value=2.3e-55  Score=361.89  Aligned_cols=172  Identities=61%  Similarity=1.093  Sum_probs=163.0

Q ss_pred             CCCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCC
Q 019054            1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDG   80 (347)
Q Consensus         1 ~~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~   80 (347)
                      |+||+|||||++++++.|+|+||||++.||+||+||++||++.++++. .++++||+|+.||||+|+|||||||++.++|
T Consensus         1 ~~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~g~-~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G   79 (173)
T 2igv_A            1 MSRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGK-SGKPLHFKGSKFHRIIPNFMIQGGDFTRGNG   79 (173)
T ss_dssp             CCCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCT-TSSBSCCTTCBCCEEETTTEEEECCTTTSSS
T ss_pred             CCCCEEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHhcCCCCCCc-cCccceECCCEEEEEECCCEEEcCCCCCCCC
Confidence            899999999999999999999999999999999999999998665543 4788899999999999999999999988899


Q ss_pred             CCCCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCc
Q 019054           81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC  160 (347)
Q Consensus        81 ~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~  160 (347)
                      +|++|+||.+|+||++.++|+++|+|||||.+|||++|||||++.+.|+||++|+|||+|++||++|++|+.+++.. ++
T Consensus        80 ~gg~siyg~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~~-~~  158 (173)
T 2igv_A           80 TGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQS-GK  158 (173)
T ss_dssp             SCCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTT-SC
T ss_pred             CCCCccCCCcccCcccccCCCCCeEEEEeeCCCCCcceEEEEEcCCccccCCCeeEEEEEecCHHHHHHHHhCCCCC-CC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998854 89


Q ss_pred             cccceEeccceecC
Q 019054          161 PIADVTITDCGEIP  174 (347)
Q Consensus       161 P~~~v~I~~~g~~~  174 (347)
                      |..+|.|.+|+.+.
T Consensus       159 P~~~v~I~~~g~l~  172 (173)
T 2igv_A          159 PVKDCMIADCGQLK  172 (173)
T ss_dssp             CSSCEEEEEEEEEC
T ss_pred             CCCCEEEEEeEEEc
Confidence            99999999999873

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A

Probab=100.00  E-value=3.4e-55  Score=362.47  Aligned_cols=172  Identities=60%  Similarity=1.030  Sum_probs=165.0

Q ss_pred             CCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCC
Q 019054            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT   81 (347)
Q Consensus         2 ~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~   81 (347)
                      .||+|||||+|++++.|+|+||||++.||+||+||++||++.++.+...++..||+|+.||||+|+|||||||++.++|+
T Consensus         8 ~~~~vf~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~   87 (179)
T 2wfi_A            8 QRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGR   87 (179)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEEECCTTTSSSS
T ss_pred             CCCeEEEEEEECCccceEEEEEEcCCCCChHHHHHHHHhcCCcCcccccccCCeECCCEEEEEECCCEEEcccccCCCCC
Confidence            39999999999999999999999999999999999999999887766667888999999999999999999999888999


Q ss_pred             CCCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCcc
Q 019054           82 GGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (347)
Q Consensus        82 ~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P  161 (347)
                      |++|+||..|+||++.++|+++|+|||||.+|||++|||||++.+.|+||++|+|||+|++||++|++|++++++..++|
T Consensus        88 gg~si~g~~f~dE~~~~~h~~~G~lsMAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~t~~~~~P  167 (179)
T 2wfi_A           88 GGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKP  167 (179)
T ss_dssp             CCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTSCB
T ss_pred             CCCcccCCcccccccCcCcCCCeEEEEEeCCCCCcceEEEEEcCCCcccCCCeeEEEEEeCCHHHHHHHHcCCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988999


Q ss_pred             ccceEeccceec
Q 019054          162 IADVTITDCGEI  173 (347)
Q Consensus       162 ~~~v~I~~~g~~  173 (347)
                      ..+|.|.+|+.+
T Consensus       168 ~~~v~I~~~G~l  179 (179)
T 2wfi_A          168 FAEVRILSCGEL  179 (179)
T ss_dssp             SSCEEEEEEEEC
T ss_pred             CCCeEEEeCeeC
Confidence            999999999875

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens}

Probab=100.00  E-value=6.8e-55  Score=363.41  Aligned_cols=174  Identities=56%  Similarity=0.961  Sum_probs=165.7

Q ss_pred             CCCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCC
Q 019054            1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDG   80 (347)
Q Consensus         1 ~~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~   80 (347)
                      +.||+|||||+|++++.|+|+||||++.||+||+||++||++.++.+...++..||+|+.||||+|+|||||||++.++|
T Consensus        17 ~~~~~vf~di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~k~~~Y~g~~FhRVi~~fmiQgGd~~~~~G   96 (192)
T 2he9_A           17 RGSPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEGNG   96 (192)
T ss_dssp             --CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEEECCTTTSSS
T ss_pred             cCCCeEEEEEEECCEecceEEEEEcCCCCchHHHHHHHHhcCCCCcccccccCCeECCCEEEEEECCCEEEcCcccCCCC
Confidence            35899999999999999999999999999999999999999988776666788899999999999999999999988899


Q ss_pred             CCCCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCc
Q 019054           81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC  160 (347)
Q Consensus        81 ~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~  160 (347)
                      +|++|+||.+|+||++.++|+++|+|||||.+||+|+|||||++.+.|+||++|+|||+|++||++|++|+.++++..++
T Consensus        97 ~gg~siyg~~f~dE~~~l~h~~~G~lsMAn~gp~tngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~  176 (192)
T 2he9_A           97 KGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASR  176 (192)
T ss_dssp             SCCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSC
T ss_pred             CCCCcccCCcccCccccCCCCCCeEEEEEeCCCCCcceEEEEEcCCCcccCCCccEEEEEEeCHHHHHHHHcCCcCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998899


Q ss_pred             cccceEeccceecC
Q 019054          161 PIADVTITDCGEIP  174 (347)
Q Consensus       161 P~~~v~I~~~g~~~  174 (347)
                      |..+|+|.+|+++.
T Consensus       177 P~~~v~I~~~g~l~  190 (192)
T 2he9_A          177 PYADVRVIDCGVLA  190 (192)
T ss_dssp             BSSCEEEEEEEECC
T ss_pred             CcCCeEEEEeEEEc
Confidence            99999999999884

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*

Probab=100.00  E-value=7.1e-54  Score=355.49  Aligned_cols=169  Identities=61%  Similarity=0.986  Sum_probs=159.2

Q ss_pred             CCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCC
Q 019054            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT   81 (347)
Q Consensus         2 ~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~   81 (347)
                      .||+|||||++++++.|+|+||||++.||+||+||++||++.++++. .+++++|+|+.||||+|+|||||||++.++|+
T Consensus        18 ~~~~v~~di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~-~~~~~~Y~g~~FhRVi~~f~iQgGd~~~~~G~   96 (186)
T 2poy_A           18 GNPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQ-SGKPLCYTGSFFHRIIPQFMIQGGDFTRGDGT   96 (186)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCT-TSSBSCCTTCBCCEEETTTEEEECCTTTSSSS
T ss_pred             CCCEEEEEEeECCEecccEEEEEeCCCCcHHHHHHHHHhcccCCccc-cCccceECCCEEEEEeCCCEEEeCCCCCCCCC
Confidence            58999999999999999999999999999999999999998666654 47888999999999999999999999888999


Q ss_pred             CCCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCcc
Q 019054           82 GGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (347)
Q Consensus        82 ~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P  161 (347)
                      |++|+||.+|+||++.++|.++|+|||||.+||+++|||||++.+.|+||++|+|||+|++||++|++|+.+++. +++|
T Consensus        97 gg~si~g~~f~dE~~~l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~-~~~P  175 (186)
T 2poy_A           97 GGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGSQ-NGKP  175 (186)
T ss_dssp             CCCCTTC-CBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCCT-TSCC
T ss_pred             CCCccCCCcccCcccccccCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCeeEEEEEecCHHHHHHHHhCCCC-CCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999984 4899


Q ss_pred             ccceEecccee
Q 019054          162 IADVTITDCGE  172 (347)
Q Consensus       162 ~~~v~I~~~g~  172 (347)
                      ..+|+|.+||.
T Consensus       176 ~~~v~I~~cG~  186 (186)
T 2poy_A          176 TKSVCITASGV  186 (186)
T ss_dssp             SSCEEEEEEEC
T ss_pred             CCCEEEEeCCC
Confidence            99999999984

>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*

Probab=100.00  E-value=8e-54  Score=351.66  Aligned_cols=169  Identities=59%  Similarity=0.999  Sum_probs=158.4

Q ss_pred             CCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCC
Q 019054            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT   81 (347)
Q Consensus         2 ~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~   81 (347)
                      .||+|||||+|++++.|+|+||||++.||+||+||++||++. +++. .+++++|+||.||||+|+|||||||++.++|+
T Consensus         2 ~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~-g~g~-~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~   79 (170)
T 1qng_A            2 KRSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGE-KIGS-RGKNLHYKNSIFHRIIPQFMCQGGDITNGNGS   79 (170)
T ss_dssp             CSCEEEEEEEESSSEEEEEEEEECTTTCHHHHHHHHHHHHTC-EECT-TSSEECCTTCBCCEEETTTEEEECCTTTSSSS
T ss_pred             CCCEEEEEEeECCEeceeEEEEEcCCCCCHHHHHHHHHhccC-CcCc-cCccceECCCEEEEEECCCEEEcCCccCCCCC
Confidence            489999999999999999999999999999999999999863 2322 46777799999999999999999999888999


Q ss_pred             CCCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCcc
Q 019054           82 GGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (347)
Q Consensus        82 ~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P  161 (347)
                      |++|+||.+|+||++.++|+++|+|||||.+|||++|||||++.+.|+||++|+|||+|++||++|++|+++++ .+++|
T Consensus        80 gg~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~t-~~~~P  158 (170)
T 1qng_A           80 GGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGA-KSGYV  158 (170)
T ss_dssp             CCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCC-TTCCC
T ss_pred             CCccccCCcccccccccccCCCCEEEEeecCCCCcccEEEEECCCCcccCCCeeEEEEEECCHHHHHHHHhCCC-CCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999 55899


Q ss_pred             ccceEeccceec
Q 019054          162 IADVTITDCGEI  173 (347)
Q Consensus       162 ~~~v~I~~~g~~  173 (347)
                      ..+|.|.+|+.+
T Consensus       159 ~~~v~I~~cG~l  170 (170)
T 1qng_A          159 KRSVVITDCGEL  170 (170)
T ss_dssp             SSCEEEEEEEEC
T ss_pred             CCCeEEEeceeC
Confidence            999999999975

>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...

Probab=100.00  E-value=1.9e-53  Score=347.70  Aligned_cols=163  Identities=59%  Similarity=0.983  Sum_probs=154.9

Q ss_pred             CCCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCccc-ccCCeeEEEecCceEEeccCCCCC
Q 019054            1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLH-YKGVRFHRVIKGFMIQGGDISAGD   79 (347)
Q Consensus         1 ~~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~-y~g~~~~rv~~~~~iq~G~~~~~~   79 (347)
                      |+||+|||||++++++.|+|+||||++.||+||+||++||++.++         | |+|+.||||+|+|||||||++.++
T Consensus         1 ~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g---------~~Y~g~~fhRvi~~f~iQgGd~~~~~   71 (165)
T 2z6w_A            1 MGNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKG---------FGYKGSTFHRVIPSFMCQAGDFTNHN   71 (165)
T ss_dssp             -CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS---------CCSTTCBEEEEETTTEEEECCTTTSS
T ss_pred             CCCCEEEEEEEECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCCC---------ccCcCCEEEEEECCCEEEeCCccCCC
Confidence            889999999999999999999999999999999999999996532         6 999999999999999999998889


Q ss_pred             CCCCCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCC
Q 019054           80 GTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDND  159 (347)
Q Consensus        80 ~~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~  159 (347)
                      |+|++|+||.+|+||++.++|.++|+|||||.+|||++|||||++.+.|+||++|+|||+|++||+++++|+.+++ .++
T Consensus        72 g~gg~si~g~~f~dE~~~l~h~~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~~-~~~  150 (165)
T 2z6w_A           72 GTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGS-KSG  150 (165)
T ss_dssp             SSCCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCC-TTS
T ss_pred             CCCCCcccCCcccCcccccccCCCCEEEEeeCCCCCcccEEEEEcCCCcccCCCeeEEEEEEcCHHHHHHHHhCCC-CCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999986 458


Q ss_pred             ccccceEeccceec
Q 019054          160 CPIADVTITDCGEI  173 (347)
Q Consensus       160 ~P~~~v~I~~~g~~  173 (347)
                      +|..+|.|.+|+.+
T Consensus       151 ~P~~~v~I~~~g~l  164 (165)
T 2z6w_A          151 RTSKKIVITDCGQL  164 (165)
T ss_dssp             CCSSCEEEEEEEEC
T ss_pred             CCCCcEEEEEeEEE
Confidence            99999999999987

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A

Probab=100.00  E-value=3e-53  Score=350.16  Aligned_cols=169  Identities=58%  Similarity=0.988  Sum_probs=160.4

Q ss_pred             CCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCC
Q 019054            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT   81 (347)
Q Consensus         2 ~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~   81 (347)
                      .||+|||||++++++.|+|+||||++.||+||+||++||+++.+.   .|++++|+|+.||||+|+|||||||++.++|+
T Consensus         9 ~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~---~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G~   85 (177)
T 1mzw_A            9 VNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRK---DGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGT   85 (177)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCEE---TTEECSSTTCBCCEEETTTEEEECCTTTSSSC
T ss_pred             CCCEEEEEEEECCeeceeEEEEEcCCCCcHHHHHHHHHHhcccCC---cCccceECCCEEEEEECCCEEEcCCcccCCCC
Confidence            389999999999999999999999999999999999999987533   25667799999999999999999999888999


Q ss_pred             CCCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCcc
Q 019054           82 GGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (347)
Q Consensus        82 ~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P  161 (347)
                      |++|+||.+|+||++.++|+++|+|||||.+|||++|||||++.+.|+||++|+|||+|++||+++++|+.++++.+++|
T Consensus        86 gg~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~t~~~~~P  165 (177)
T 1mzw_A           86 GVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKP  165 (177)
T ss_dssp             CCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCB
T ss_pred             CCCccCCCcccCcccccccCCCCEEEEccCCCCCcceEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999888999


Q ss_pred             ccceEeccceec
Q 019054          162 IADVTITDCGEI  173 (347)
Q Consensus       162 ~~~v~I~~~g~~  173 (347)
                      ..+|.|.+|+.+
T Consensus       166 ~~~v~I~~cG~l  177 (177)
T 1mzw_A          166 KLPVVISQCGEM  177 (177)
T ss_dssp             SSCEEEEEEEEC
T ss_pred             CCCEEEEeceeC
Confidence            999999999975

>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A

Probab=100.00  E-value=6.3e-53  Score=346.26  Aligned_cols=163  Identities=60%  Similarity=1.000  Sum_probs=154.8

Q ss_pred             CCCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCccc-ccCCeeEEEecCceEEeccCCCCC
Q 019054            1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLH-YKGVRFHRVIKGFMIQGGDISAGD   79 (347)
Q Consensus         1 ~~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~-y~g~~~~rv~~~~~iq~G~~~~~~   79 (347)
                      |.||+|||||++++++.|+|+||||++.||+||+||++||++.++         | |+|+.||||+|+|||||||++.++
T Consensus         8 ~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g---------~~Y~g~~FhRvi~~f~iQgGd~~~~~   78 (172)
T 2cmt_A            8 RNLPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERG---------FGYHNCCFHRVIPQFMCQGGDFVKGD   78 (172)
T ss_dssp             -CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS---------CSSTTCBEEEEETTTEEEECCTTTSS
T ss_pred             CCCCEEEEEEEECCeecceEEEEEcCCCCCHHHHHHHHHhccCCC---------ceECCCEEEEEECCCEEEcCCccCCC
Confidence            569999999999999999999999999999999999999987432         5 999999999999999999998889


Q ss_pred             CCCCCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCC
Q 019054           80 GTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDND  159 (347)
Q Consensus        80 ~~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~  159 (347)
                      |+|++|+||.+|+||++.++|+++|+|||||.+|||++|||||++.+.|+||++|+|||+|++||++|++|+.+++.. +
T Consensus        79 G~gg~si~g~~f~dE~~~l~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~G~dvv~~I~~~~~~~-~  157 (172)
T 2cmt_A           79 GTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKS-G  157 (172)
T ss_dssp             SSCCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHGGGGCCTT-C
T ss_pred             CCCCCccCCCcccccccCcccCCceEEEEeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCCCC-C
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999998854 8


Q ss_pred             ccccceEeccceec
Q 019054          160 CPIADVTITDCGEI  173 (347)
Q Consensus       160 ~P~~~v~I~~~g~~  173 (347)
                      +|..+|+|.+|+.+
T Consensus       158 ~P~~~v~I~~~g~l  171 (172)
T 2cmt_A          158 KVKEPVIISRCGEL  171 (172)
T ss_dssp             CCSSCEEEEEEEEE
T ss_pred             CCCCCEEEEEeEeE
Confidence            99999999999986

>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A

Probab=100.00  E-value=1.2e-52  Score=345.34  Aligned_cols=164  Identities=57%  Similarity=0.956  Sum_probs=154.8

Q ss_pred             CCCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCC
Q 019054            1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDG   80 (347)
Q Consensus         1 ~~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~   80 (347)
                      |.||+|||||++++++.|+|+||||++.||+||+||++||++.+++        +|+|+.||||+|+|||||||++.++|
T Consensus         9 ~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~--------~Y~g~~FhRvi~~f~iQgGd~~~~~g   80 (173)
T 2r99_A            9 RSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGF--------GFKGSSFHRIIPQFMCQGGDFTNHNG   80 (173)
T ss_dssp             -CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSC--------CSTTCBEEEEETTTEEEECCTTTSSS
T ss_pred             cCCCEEEEEEEECCccceeEEEEECCCCCcHHHHHHHHHhcccCCc--------eecCCEEEEeeCCCEEEeCCcCCCCC
Confidence            5699999999999999999999999999999999999999864321        39999999999999999999988899


Q ss_pred             CCCCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCc
Q 019054           81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC  160 (347)
Q Consensus        81 ~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~  160 (347)
                      +|++|+||..|+||++.++|+++|+|||||.+||+++|||||++.+.|+||++|+|||+|++||++|++|+.++++. ++
T Consensus        81 ~gg~si~g~~f~dE~~~l~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~~-~~  159 (173)
T 2r99_A           81 TGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKD-GK  159 (173)
T ss_dssp             SCCCBTTBSCBCCCCCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTT-CC
T ss_pred             CCCCccCCCcccCcccCcccCCCcEEEEccCCCCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCCCC-CC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998865 79


Q ss_pred             cccceEeccceec
Q 019054          161 PIADVTITDCGEI  173 (347)
Q Consensus       161 P~~~v~I~~~g~~  173 (347)
                      |..+|+|.+|+.+
T Consensus       160 P~~~v~I~~cG~l  172 (173)
T 2r99_A          160 PKQKVIIADCGEY  172 (173)
T ss_dssp             CSSCEEEEEEEEC
T ss_pred             CCCCeEEEEeeeE
Confidence            9999999999986

>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A

Probab=100.00  E-value=5.8e-53  Score=345.64  Aligned_cols=163  Identities=56%  Similarity=0.907  Sum_probs=155.4

Q ss_pred             CCCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCccc-ccCCeeEEEecCceEEeccCCCCC
Q 019054            1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLH-YKGVRFHRVIKGFMIQGGDISAGD   79 (347)
Q Consensus         1 ~~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~-y~g~~~~rv~~~~~iq~G~~~~~~   79 (347)
                      |.+|+|||||++++++.|+|+||||++.||+||+||++||++.++         | |+||.||||+|+|||||||+..++
T Consensus         9 ~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g---------~~Y~g~~FhRvi~~f~iQgGd~~~~~   79 (172)
T 2haq_A            9 EVTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHG---------FGYKDSIFHRVIQNFMIQGGDFTNFD   79 (172)
T ss_dssp             CCCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS---------CCSTTCBCCEEETTTEEEECCTTTSS
T ss_pred             CCCCeEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHhccCCC---------cccCCCEEEEEECCCEEecCCccCCC
Confidence            578999999999999999999999999999999999999976432         6 999999999999999999987789


Q ss_pred             CCCCCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCC
Q 019054           80 GTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDND  159 (347)
Q Consensus        80 ~~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~  159 (347)
                      |+|++|+||.+|+||++.++|. +|+|||||.+|||++|||||++.+.|+||++|+|||+|++||+++++|++++++.++
T Consensus        80 g~gg~si~g~~f~dE~~~l~h~-~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~~~~  158 (172)
T 2haq_A           80 GTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHD  158 (172)
T ss_dssp             SSCCCCSSSSCBCCCCCCSCCC-TTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGG
T ss_pred             CCCCccccCCcccCcCCCcccC-ceEEEEccCCCCCcccEEEEECCCCCccCCCEeEEEEEeCCHHHHHHHHhCCcCCCC
Confidence            9999999999999999999999 999999999999999999999999999999999999999999999999999998888


Q ss_pred             ccccceEeccceec
Q 019054          160 CPIADVTITDCGEI  173 (347)
Q Consensus       160 ~P~~~v~I~~~g~~  173 (347)
                      +|..+|+|.+|+.+
T Consensus       159 ~P~~~v~I~~~g~l  172 (172)
T 2haq_A          159 RPVKPVKIVASGEL  172 (172)
T ss_dssp             CBSSCEEEEEEEEC
T ss_pred             cCCCCeEEEEeEEC
Confidence            99999999999874

>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} SCOP: b.62.1.1 PDB: 3o7t_A

Probab=100.00  E-value=1.6e-52  Score=342.55  Aligned_cols=162  Identities=57%  Similarity=0.952  Sum_probs=155.3

Q ss_pred             CCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCccc-ccCCeeEEEecCceEEeccCCCCCC
Q 019054            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLH-YKGVRFHRVIKGFMIQGGDISAGDG   80 (347)
Q Consensus         2 ~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~-y~g~~~~rv~~~~~iq~G~~~~~~~   80 (347)
                      +||+|||||++++++.|+|+||||++.||+||+||++||+++++         | |+|+.||||+|+|||||||+..++|
T Consensus         1 ~~p~vf~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~L~~g~~g---------~~Y~g~~fhRvi~~f~iQgGd~~~~~g   71 (164)
T 3pmp_A            1 AMANVFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHG---------FGYKDSIFHRVIPQFMLQGGDFTRHNG   71 (164)
T ss_dssp             CCCCEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS---------CSSTTCBEEEEETTTEEEECCTTTSSS
T ss_pred             CCCEEEEEEEECCEEeeEEEEEEeCCCCcHHHHHHHHHhcccCC---------CcccCCEEEEEECCCeEEeCCCCCCCC
Confidence            58999999999999999999999999999999999999996532         5 9999999999999999999888899


Q ss_pred             CCCCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCc
Q 019054           81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC  160 (347)
Q Consensus        81 ~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~  160 (347)
                      +|++|+||.+|+||++.++|+++|+|||||.+|++++|||||++.+.|+||++|+|||+|++||+++++|++++++ +++
T Consensus        72 ~gg~si~g~~~~dE~~~l~h~~~G~lsma~~g~~t~~SQFfIt~~~~~~Ld~~~~vFG~Vv~G~~vv~~I~~~~~~-~~~  150 (164)
T 3pmp_A           72 TGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKVEGKGSA-SGK  150 (164)
T ss_dssp             SCCCBTTBSCBCCCCCCSCCCSTTEEEECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TCC
T ss_pred             CCCcccCCccccccccccCcCCCcEEEEeeCCCCCcccEEEEECCCChhhCCCccEEEEEeCCHHHHHHHHhCCCC-CCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999987 489


Q ss_pred             cccceEeccceec
Q 019054          161 PIADVTITDCGEI  173 (347)
Q Consensus       161 P~~~v~I~~~g~~  173 (347)
                      |..+|+|.+|+++
T Consensus       151 P~~~v~I~~cg~l  163 (164)
T 3pmp_A          151 TNATIKITDCGTV  163 (164)
T ss_dssp             CSSCEEEEEEEEC
T ss_pred             cccCEEEEeCeEE
Confidence            9999999999986

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1

Probab=100.00  E-value=1.4e-52  Score=356.75  Aligned_cols=169  Identities=49%  Similarity=0.929  Sum_probs=161.0

Q ss_pred             CCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCC
Q 019054            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT   81 (347)
Q Consensus         2 ~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~   81 (347)
                      .||+|||||++++++.|+|+||||++.||+||+||++||+++++.+   |+++||+||.||||+|+|||||||++.++|+
T Consensus        58 ~~~~V~~disi~~t~~G~I~ieL~~d~aP~tv~NF~~L~~~~~g~~---g~~~~Y~gt~FHRVi~~FmiQgGD~~~g~G~  134 (229)
T 1z81_A           58 SNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVN---NLPVGYKNTIFHRVIKEFMIQGGDFINHNGS  134 (229)
T ss_dssp             TCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSS---SSBCSSTTEECCEEETTTEEEECCTTTSSSC
T ss_pred             CCcEEEEEEeECCeecccEEEEEcCCCCCHHHHHHHHHhhCCCCCc---CCCceECCCEEEEEeCCCEEEcCCCcCCCCC
Confidence            3899999999999999999999999999999999999999876543   6778999999999999999999999888999


Q ss_pred             CCCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEE--eChHHHHHHhcccCCCC-
Q 019054           82 GGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVI--KGMGVVRSIEHVMTGDN-  158 (347)
Q Consensus        82 ~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~--~g~~vl~~I~~~~~~~~-  158 (347)
                      |++|+||.+|+||++.++|+++|+|||||.+|||++|||||++.+.|+||++|+|||+|+  +||++|++|++++++.. 
T Consensus       135 Gg~siyg~~f~dE~~~l~h~~~G~LsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~~eGmdVv~~I~~~~t~~~~  214 (229)
T 1z81_A          135 GSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYI  214 (229)
T ss_dssp             CCCBTTBSCCCCCCCCSCCCSTTEEEECCSSSSCCCSCEEEESSCCGGGBTTBCEEEEECSHHHHHHHHHHHHSCBCTTT
T ss_pred             CCCccCCCcccccccccccCCCcEEEeccCCCCCcccEEEEECCCCcccCCCeeEEEEEEecCcHHHHHHHHhCCCCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999  99999999999999887 


Q ss_pred             CccccceEeccceec
Q 019054          159 DCPIADVTITDCGEI  173 (347)
Q Consensus       159 ~~P~~~v~I~~~g~~  173 (347)
                      ++|..+|+|.+|+.+
T Consensus       215 ~~P~~~V~I~~cG~l  229 (229)
T 1z81_A          215 YKPKIPINVVECGEL  229 (229)
T ss_dssp             CCBSSCEEEEEEEEC
T ss_pred             CCCCCCeEEEeCeeC
Confidence            899999999999975

>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*

Probab=100.00  E-value=3.7e-52  Score=346.18  Aligned_cols=163  Identities=59%  Similarity=0.998  Sum_probs=155.9

Q ss_pred             CCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCccc-ccCCeeEEEecCceEEeccCCCCCCC
Q 019054            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLH-YKGVRFHRVIKGFMIQGGDISAGDGT   81 (347)
Q Consensus         3 ~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~-y~g~~~~rv~~~~~iq~G~~~~~~~~   81 (347)
                      +++|||||++++++.|+|+||||++.||+||+||++||++.++         | |+|+.||||+|+|||||||+..++|+
T Consensus        15 ~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g---------~~Y~g~~FhRvi~~f~iQgGd~~~~~g~   85 (188)
T 3ich_A           15 TVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKG---------FGYKNSKFHRVIKDFMIQGGDFTRGDGT   85 (188)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS---------CSSTTCBCCEEETTTEEEECCTTTSSSS
T ss_pred             CCeEEEEEEECCEeceeEEEEEcCCCCcHHHHHHHHHhcccCC---------ccccCCEEEEEECCCEEEcCCccCCCCC
Confidence            6799999999999999999999999999999999999986432         6 99999999999999999998778999


Q ss_pred             CCCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCcc
Q 019054           82 GGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (347)
Q Consensus        82 ~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P  161 (347)
                      |++|+||..|+||++.++|+++|+|||||.+|||++|||||++.+.|+||++|+|||+|++||++|++|+.++++.+++|
T Consensus        86 gg~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~~~~~P  165 (188)
T 3ich_A           86 GGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKP  165 (188)
T ss_dssp             CCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCB
T ss_pred             CCccccCCcccccccCcccCCCeEEEEccCCCCCcccEEEEECCCCcccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCeE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988899


Q ss_pred             ccceEeccceecC
Q 019054          162 IADVTITDCGEIP  174 (347)
Q Consensus       162 ~~~v~I~~~g~~~  174 (347)
                      ..+|.|.+|+++.
T Consensus       166 ~~~v~I~~~~~l~  178 (188)
T 3ich_A          166 LKDVIIADCGKIE  178 (188)
T ss_dssp             SSCEEEEEEEEEE
T ss_pred             CCCEEEEEeEEEe
Confidence            9999999999883

>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens}

Probab=100.00  E-value=8.8e-52  Score=343.13  Aligned_cols=164  Identities=59%  Similarity=0.983  Sum_probs=155.3

Q ss_pred             CCCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCC
Q 019054            1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDG   80 (347)
Q Consensus         1 ~~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~   80 (347)
                      |.||+|||||++++++.|+|+||||++.||+||+||++||++++++        .|+|+.||||+|+|||||||+..++|
T Consensus        20 ~~~p~v~~di~i~~~~~G~I~ieL~~~~aP~t~~NF~~L~~~~~g~--------~Y~g~~FhRvi~~f~iQgGd~~~~~g   91 (184)
T 3rdd_A           20 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGF--------GYKGSCFHRIIPGFMCQGGDFTRHNG   91 (184)
T ss_dssp             -CCCEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSC--------SSTTCBCCEEETTTEEEECCTTTSSS
T ss_pred             CCCCEEEEEEeECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCcCc--------ccCCCEEEEccCCcEEEeCCCCCCCC
Confidence            5799999999999999999999999999999999999999886422        19999999999999999999888899


Q ss_pred             CCCCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCc
Q 019054           81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC  160 (347)
Q Consensus        81 ~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~  160 (347)
                      +|++++||..|+||++.++|+++|+|||||.+||+++|||||++.+.|+||++|+|||+|++||++|++|+++++. +++
T Consensus        92 ~gg~si~g~~~~de~~~l~h~~~G~lsmA~~gp~s~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~-~g~  170 (184)
T 3rdd_A           92 TGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSR-NGK  170 (184)
T ss_dssp             SCCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TSC
T ss_pred             CCCcccCCCcccCcccccccCCCcEEEEEeCCCCCcccEEEEEeCCchhhCCCceEEEEEecCHHHHHHHHhcCCC-CCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999875 489


Q ss_pred             cccceEeccceec
Q 019054          161 PIADVTITDCGEI  173 (347)
Q Consensus       161 P~~~v~I~~~g~~  173 (347)
                      |..+|+|.+|+++
T Consensus       171 P~~~v~I~~cG~l  183 (184)
T 3rdd_A          171 TSKKITIADCGQL  183 (184)
T ss_dssp             CSSCEEEEEEEEC
T ss_pred             CcCCeEEEeCeEE
Confidence            9999999999987

>4fru_A Cyclophilin B, peptidyl-prolyl CIS-trans isomerase; cyclophilin-type ppiase, peptidyl-prolyl CIS-trans isomerase chaperone, foldase; HET: ME2 PEG; 1.10A {Equus caballus} PDB: 4frv_A* 3ich_A 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*

Probab=100.00  E-value=9.6e-52  Score=344.32  Aligned_cols=164  Identities=59%  Similarity=0.998  Sum_probs=157.4

Q ss_pred             CCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCC
Q 019054            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG   82 (347)
Q Consensus         3 ~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~   82 (347)
                      +|+|||||++++++.|+|+||||++.||+||+||++||+++++.        ||+|+.||||+|+|||||||++.++|+|
T Consensus        12 ~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~--------~Y~g~~FhRvi~~f~iQgGd~~~~~g~g   83 (185)
T 4fru_A           12 TVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGF--------GYKDSKFHRVIKDFMIQGGDFTRGDGTG   83 (185)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSC--------CSTTCBCCEEETTTEEEECCTTTSSSSC
T ss_pred             CcEEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHHhcCCCC--------eEcCCEEEEeeCCCeEEECCCCCCCCCC
Confidence            68999999999999999999999999999999999999875322        6999999999999999999999889999


Q ss_pred             CCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCccc
Q 019054           83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI  162 (347)
Q Consensus        83 ~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P~  162 (347)
                      +.++||..|+||++.++|+++|+|||||.+||+++|||||++.+.|+||++|+|||+|++||+++++|++++++.+++|.
T Consensus        84 g~si~g~~f~de~~~~~h~~~G~lsma~~gp~t~~SQFfI~~~~~~~Ld~~~~vFG~Vv~G~dvv~~I~~~~t~~~~~P~  163 (185)
T 4fru_A           84 GKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPL  163 (185)
T ss_dssp             CCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBS
T ss_pred             CccccCCccCccccccCcCCCeEEEEeeCCCCCcceEEEEEeCCCcccCCCccEEEEEeCCHHHHHHHHhCCCCCCCcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999889999


Q ss_pred             cceEeccceecC
Q 019054          163 ADVTITDCGEIP  174 (347)
Q Consensus       163 ~~v~I~~~g~~~  174 (347)
                      .+|+|.+|+++.
T Consensus       164 ~~v~I~~~g~l~  175 (185)
T 4fru_A          164 KDVTIADCGKIE  175 (185)
T ss_dssp             SCEEEEEEEEEE
T ss_pred             CCEEEEEceEEe
Confidence            999999999884

>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi}

Probab=100.00  E-value=2.3e-51  Score=342.88  Aligned_cols=165  Identities=52%  Similarity=0.872  Sum_probs=156.1

Q ss_pred             CCCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCC
Q 019054            1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDG   80 (347)
Q Consensus         1 ~~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~   80 (347)
                      |+||+|||||++++++.|+|+||||++.||+||+||++||+++++.        +|+|+.||||+|+|||||||+..++|
T Consensus        25 ~~~p~v~~di~i~~t~~G~I~ieL~~~~aP~tv~NF~~L~~g~~g~--------~Y~g~~FhRvi~~f~iQgGd~~~~~g   96 (193)
T 3k2c_A           25 EASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGE--------GYKGSTFHRIIPGFMVQGGDYTAHNG   96 (193)
T ss_dssp             -CTTCEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHSCTTS--------SSTTCBEEEEETTTEEEECCTTTSSS
T ss_pred             cCCCEEEEEEeECCEEeeEEEEEEcCCCChHHHHHHHHHhccccCC--------cccCCEEEEEeCCCEEEeCCCCCCCC
Confidence            5799999999999999999999999999999999999999976422        29999999999999999999888899


Q ss_pred             CCCCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCc
Q 019054           81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC  160 (347)
Q Consensus        81 ~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~  160 (347)
                      +|+.|+||..|+||++.++|+++|+|||||.+|++++|||||++++.|+||++|+|||+|++||++|++|++++++. ++
T Consensus        97 ~gg~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~t~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~-g~  175 (193)
T 3k2c_A           97 TGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSES-GQ  175 (193)
T ss_dssp             SCCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTT-CC
T ss_pred             cCCcccCCCcccccccccccCCCcEEEEEeCCCCCCccEEEEECCCCcccCCCccEEEEEeCCHHHHHHHHhcCCCC-Cc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999985 78


Q ss_pred             cc--cceEeccceecC
Q 019054          161 PI--ADVTITDCGEIP  174 (347)
Q Consensus       161 P~--~~v~I~~~g~~~  174 (347)
                      |.  .+|+|.+|+++.
T Consensus       176 P~~~~~v~I~~cG~l~  191 (193)
T 3k2c_A          176 VKKGYRIEIRDCGVLG  191 (193)
T ss_dssp             CCTTCCEEEEEEEECC
T ss_pred             CccCccEEEEEceEeC
Confidence            88  999999999985

>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1

Probab=100.00  E-value=1.1e-50  Score=333.28  Aligned_cols=160  Identities=54%  Similarity=0.929  Sum_probs=121.7

Q ss_pred             eEEEEEEEC--Ceee---eeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCccc-ccCCeeEEEecCceEEeccCCCC
Q 019054            5 RCFLDISIG--VELE---GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLH-YKGVRFHRVIKGFMIQGGDISAG   78 (347)
Q Consensus         5 ~v~~~~~~~--~~~~---G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~-y~g~~~~rv~~~~~iq~G~~~~~   78 (347)
                      +|||||+++  |...   |+|+||||++.||+||+||++||++.++         + |+|+.||||+|+|||||||+..+
T Consensus         4 ~vf~di~i~~~~~~~T~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g---------~~Y~g~~fhRvi~~f~iQgGd~~~~   74 (172)
T 2c3b_A            4 QVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAG---------EGYRESTFHRIIPNFMIQGGDFTRG   74 (172)
T ss_dssp             CEEEEEEECCTTCSCCEEEEEEEEECTTTSHHHHHHHHHHHHSCTT---------TSSTTCBCCEEETTTEEEECC----
T ss_pred             EEEEEEEeCCCCceecccccEEEEEcCCCCcHHHHHHHHHhccCCC---------cccCCCEEEEEeCCCEEEeCCcCCC
Confidence            799999999  8766   9999999999999999999999996542         5 99999999999999999997778


Q ss_pred             CCCCCCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEe--ChHHHHHHhcccCC
Q 019054           79 DGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIK--GMGVVRSIEHVMTG  156 (347)
Q Consensus        79 ~~~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~--g~~vl~~I~~~~~~  156 (347)
                      +|+|++|+||.+|+||++.++|+++|+|||||.+||+++|||||++.+.|+||++|+|||+|++  ||+++++|++++++
T Consensus        75 ~g~gg~si~g~~f~dE~~~~~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~~~G~dvv~~I~~~~t~  154 (172)
T 2c3b_A           75 NGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSS  154 (172)
T ss_dssp             ------------------CHHHHHTCEEEEC---------CEEEECSCCTTCCSCCEEEEEECSHHHHHHHHHHHTTCCT
T ss_pred             CCCCCcccCCCcccCcccccccCCCeEEEEeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEecCCHHHHHHHHhCCCC
Confidence            8999999999999999999999999999999999999999999999999999999999999999  99999999999998


Q ss_pred             CCC-ccccceEeccceec
Q 019054          157 DND-CPIADVTITDCGEI  173 (347)
Q Consensus       157 ~~~-~P~~~v~I~~~g~~  173 (347)
                      ..+ +|..+|+|.+|+.+
T Consensus       155 ~~~~~P~~~v~I~~cG~l  172 (172)
T 2c3b_A          155 SGSVRSNTRPKIVNCGEL  172 (172)
T ss_dssp             TSCCCSSSCCEEEEEEEC
T ss_pred             CCCccCCCCeEEEeCeeC
Confidence            754 99999999999974

>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus}

Probab=100.00  E-value=5.3e-50  Score=343.70  Aligned_cols=176  Identities=28%  Similarity=0.532  Sum_probs=153.7

Q ss_pred             CCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCC---------CCCCcccccCCeeEEEecCceEEe
Q 019054            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGP---------NTGVPLHYKGVRFHRVIKGFMIQG   72 (347)
Q Consensus         2 ~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~---------~~~~~~~y~g~~~~rv~~~~~iq~   72 (347)
                      .||+|||||+|++++.|+|+||||.+.||+||+||++||++.+.+..         ..|++..|+||.||||+|+|||||
T Consensus        13 ~~p~v~~di~i~~t~~G~I~ieL~~d~aP~tv~NF~~L~~g~~~~~~p~~~~~~~~~~G~~~~Y~gt~FHRVi~~FmiQg   92 (234)
T 2ose_A           13 KNPRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTYEGCKFHNVLHNNYIVS   92 (234)
T ss_dssp             SSCEEEEEEEETTEEEEEEEEEECGGGCHHHHHHHHHHHHTCCCC---------------CCCSTTCBCCEEETTTEEEE
T ss_pred             CCCEEEEEEEECCcccceEEEEEcCCCCcHHHHHHHHHhcCCccccccccccccccccCCceEECCcEEEEEECCCEEEc
Confidence            58999999999999999999999999999999999999997633210         013333499999999999999999


Q ss_pred             ccCCCCCCCCCCcccCCC-----CCCCccccCCCCccEEEeee----CCCCCCCceEEEecCC------CCCCCCCCcee
Q 019054           73 GDISAGDGTGGESIYGLK-----FEDENFELKHERKGMLSMAN----AGPNTNGSQFFITTTR------TSHLDGKHVVF  137 (347)
Q Consensus        73 G~~~~~~~~~~~~~~~~~-----~~~e~~~~~~~~~g~~~~~~----~~~~~~~sqF~i~~~~------~~~l~~~~~vf  137 (347)
                      ||+..++|+|++|+||..     |+  ++.++|+++|+|||||    .||||+||||||++.+      .|+||++|+||
T Consensus        93 Gd~~~g~G~Gg~siyg~~~~p~~f~--~~~l~h~~~G~lsMAn~~~~~gpntngSQFFIt~~~~~~~~g~p~LDg~~tVF  170 (234)
T 2ose_A           93 GDIYNSNGSSAGTVYCDEPIPPVFG--DYFYPHESKGLLSLVPYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVI  170 (234)
T ss_dssp             CCCC----CCCCCTTTTCCBCCCCC--SCCCCSCSTTEEEECCEECTTSCEEBCSCEEEESSCCCTTSSGGGSCTTSEEE
T ss_pred             CCccCCCCCCCccccCCccCccccc--CcCccCCCCCEEEEecccccCCCCCccceEEEEecCccccCCCcccCCCeeEE
Confidence            998778999999999998     76  5789999999999999    8999999999999999      89999999999


Q ss_pred             eEEEeChHHHHHHhcccCCCCCccccceEeccceecCCCCCC
Q 019054          138 GRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADD  179 (347)
Q Consensus       138 G~v~~g~~vl~~I~~~~~~~~~~P~~~v~I~~~g~~~~~~~~  179 (347)
                      |+|++||++|++|+.++++.+++|..+|.|.+|+++..++++
T Consensus       171 G~Vv~GmdVv~~I~~~~t~~~~~P~~~V~I~~~~~l~~p~~~  212 (234)
T 2ose_A          171 GQVYGGLDVLDKINSMIKPYAGRKYPTFSIGKCGAYLDSSQA  212 (234)
T ss_dssp             EEEEECHHHHHHHHHHTCCCTTCCCCCEEEEEEEECCCHHHH
T ss_pred             EEEeCCHHHHHHHHhCCcCCCCCccCCEEEEEEEEecCCccc
Confidence            999999999999999999988999999999999999765443

>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A

Probab=100.00  E-value=2.1e-48  Score=317.93  Aligned_cols=155  Identities=50%  Similarity=0.838  Sum_probs=147.3

Q ss_pred             CCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCC
Q 019054            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT   81 (347)
Q Consensus         2 ~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~   81 (347)
                      .++.|.|+++     .|+|+||||++.||+||+||++||+.+           ||+|+.||||+|+|||||||++ ++|+
T Consensus        10 ~~~~v~l~t~-----~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Y~g~~fhRvi~~f~iQgGd~~-~~g~   72 (166)
T 2x7k_A           10 QPPNVYLETS-----MGIIVLELYWKHAPKTCKNFAELARRG-----------YYNGTKFHRIIKDFMIQGGDPT-GTGR   72 (166)
T ss_dssp             CCSEEEEEET-----TEEEEEEECTTTCHHHHHHHHHHHHHT-----------TTTTEECCEEETTTEEEECCTT-SSSS
T ss_pred             CCCEEEEEeC-----CCcEEEEEccCCCCHHHHHHHHHHhcC-----------CCCCCEEEEEECCCEEEcCCCC-CCCC
Confidence            4688999988     799999999999999999999999987           8999999999999999999987 7899


Q ss_pred             CCCcccCCCCCCCc-cccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCc
Q 019054           82 GGESIYGLKFEDEN-FELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC  160 (347)
Q Consensus        82 ~~~~~~~~~~~~e~-~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~  160 (347)
                      |++|+||.+|+||+ +.++|.++|+|||||.+|||++|||||++.+.|+||++|+|||+|++||+++++|+.++++..++
T Consensus        73 gg~si~g~~~~dE~~~~l~h~~~G~lsmAn~gp~s~gSQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~  152 (166)
T 2x7k_A           73 GGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDR  152 (166)
T ss_dssp             CCCCTTSSCBCCCCCTTSCCCSTTEEEECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHTTSCBCTTSC
T ss_pred             CCCccCCCccccccccccCCCCCeEEEEeeCCCCCccceEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHcCCcCCCCC
Confidence            99999999999998 48999999999999999999999999999999999999999999999999999999999998889


Q ss_pred             cccceEeccceec
Q 019054          161 PIADVTITDCGEI  173 (347)
Q Consensus       161 P~~~v~I~~~g~~  173 (347)
                      |..+|+|.++.++
T Consensus       153 P~~~i~I~~~~i~  165 (166)
T 2x7k_A          153 PVDDVKIIKAYPS  165 (166)
T ss_dssp             BSSCCEEEEEEEC
T ss_pred             cCCCeEEEEEEEe
Confidence            9999999998765

>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A*

Probab=100.00  E-value=2.8e-48  Score=316.18  Aligned_cols=156  Identities=47%  Similarity=0.761  Sum_probs=146.3

Q ss_pred             EEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCCc
Q 019054            6 CFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGES   85 (347)
Q Consensus         6 v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~   85 (347)
                      |.|+++     .|+|+||||++.||+||+||++||+++           ||+|+.||||+|+|||||||+. ++|+|++|
T Consensus         3 v~~~T~-----~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Y~g~~fhRvi~~f~iQgGd~~-~~g~gg~s   65 (161)
T 2ok3_A            3 VTLHTD-----VGDIKIEVFCERTPKTCENFLALCASN-----------YYNGCIFHRNIKGFMVQTGDPT-GTGRGGNS   65 (161)
T ss_dssp             EEEEET-----TEEEEEEECTTTCHHHHHHHHHHHHTT-----------TTTTCBCCEEETTTEEEECCTT-SSSSCCCC
T ss_pred             EEEEeC-----CccEEEEEcCCCCcHHHHHHHHHhhhc-----------ccCCCEEEEEECCCEEecCCCC-CCCCCCCc
Confidence            555554     899999999999999999999999987           8999999999999999999987 78999999


Q ss_pred             ccCCCCCCCcc-ccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCC-Ccccc
Q 019054           86 IYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDN-DCPIA  163 (347)
Q Consensus        86 ~~~~~~~~e~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~-~~P~~  163 (347)
                      +||.+|+||+. .++|+++|+|||||.+|||++|||||++.+.|+||++|+|||+|++||++|++|++++++.. ++|..
T Consensus        66 i~g~~~~dE~~~~l~h~~~G~lsma~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~~~~~~~~P~~  145 (161)
T 2ok3_A           66 IWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLN  145 (161)
T ss_dssp             TTSSCBCCCCCTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTTCCBSS
T ss_pred             ccCCccccccCcCcCcCCCeEEEEecCCCCCcceEEEEEcCCCCccCCCEeEEEEEeCCHHHHHHHHhCCccCCCCCcCC
Confidence            99999999986 78999999999999999999999999999999999999999999999999999999999887 89999


Q ss_pred             ceEeccceecCCCCC
Q 019054          164 DVTITDCGEIPEGAD  178 (347)
Q Consensus       164 ~v~I~~~g~~~~~~~  178 (347)
                      +|.|.++.++..+++
T Consensus       146 ~v~I~~~~i~~~Pf~  160 (161)
T 2ok3_A          146 DVHIKDITIHANPFA  160 (161)
T ss_dssp             CCBEEEEEEECCSCC
T ss_pred             CeEEEEEEEecCCCC
Confidence            999999999976654

>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A

Probab=100.00  E-value=3.6e-48  Score=321.35  Aligned_cols=159  Identities=43%  Similarity=0.707  Sum_probs=146.4

Q ss_pred             EEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCCccc
Q 019054            8 LDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIY   87 (347)
Q Consensus         8 ~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~   87 (347)
                      +++.+. ++.|+|+||||++.||+||+||++||+++           ||+|+.||||+|+|||||||++ ++|+|++|+|
T Consensus        17 ~~v~i~-t~~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Y~g~~FhRvi~~f~iQgGd~~-~~g~gg~si~   83 (185)
T 2poe_A           17 QGVRII-TNYGDLKFELFCSQCPKACKNFLALSASG-----------YYKNTIFHKNIKGFIIQGGDPT-GTGKGGESIY   83 (185)
T ss_dssp             CEEEEE-ETTEEEEEEECTTTCHHHHHHHHHHHHTT-----------TTTTEEEEEECTTSEEEEEETT-SSSSCCCBTT
T ss_pred             eEEEEE-ecCccEEEEEeCCCCcHHHHHHHHHhccC-----------CCCCCEEEEEECCCEEEcCCCC-CCCCCCCccC
Confidence            334443 55899999999999999999999999987           8999999999999999999987 7899999999


Q ss_pred             CCCCCCCc-cccCCCCccEEEeeeCC----CCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCccc
Q 019054           88 GLKFEDEN-FELKHERKGMLSMANAG----PNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI  162 (347)
Q Consensus        88 ~~~~~~e~-~~~~~~~~g~~~~~~~~----~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P~  162 (347)
                      |.+|+||+ +.++|+++|+|||||.+    |||++|||||++.+.|+||++|+|||+|++||++|++|+.++++.+++|.
T Consensus        84 g~~~~dE~~~~l~h~~~G~lsmA~~g~~~~p~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~  163 (185)
T 2poe_A           84 GRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGKLIDGFETLNTLENCPSDKSHKPI  163 (185)
T ss_dssp             BSCBCCCCCTTSCCCSTTEEEECCSCC-CCCSCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTSCBS
T ss_pred             CCcccccccCCCccCCCeEEEEecCCCCCCCCCccceEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCcC
Confidence            99999998 78999999999999999    99999999999999999999999999999999999999999998889999


Q ss_pred             cceEeccceecCCCCCC
Q 019054          163 ADVTITDCGEIPEGADD  179 (347)
Q Consensus       163 ~~v~I~~~g~~~~~~~~  179 (347)
                      .+|.|.+|.++..++++
T Consensus       164 ~~v~I~~~~i~~dPf~d  180 (185)
T 2poe_A          164 DEIIIKDIVIHSNPIAD  180 (185)
T ss_dssp             SCCEEEEEEEECCC---
T ss_pred             CCeEEEEEEEECCCCCC
Confidence            99999999999766654

>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1

Probab=100.00  E-value=4.2e-48  Score=322.73  Aligned_cols=156  Identities=47%  Similarity=0.701  Sum_probs=146.3

Q ss_pred             CCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCC
Q 019054            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG   82 (347)
Q Consensus         3 ~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~   82 (347)
                      ++.|.|+++     .|+|+||||++.||+||+||++||+.+           ||+||.||||+|+|||||||++ ++|+|
T Consensus        38 ~~~V~l~T~-----~G~I~ieL~~~~aP~tv~NF~~L~~~g-----------~Y~g~~FhRVi~~f~iQgGd~~-~~g~g  100 (196)
T 2b71_A           38 RGYITIYTN-----LGDFEVELYWYHSPKTCLNFYTLCEMG-----------FYDNTIFHRVIPNFVIQGGDPT-GTGKG  100 (196)
T ss_dssp             SCEEEEEET-----TEEEEEEECTTTSHHHHHHHHHHHHTT-----------TTTTEEEEEEETTTEEEEEETT-SSSSC
T ss_pred             CcEEEEEeC-----CCCEEEEEeCCCCcHHHHHHHHHhhcC-----------CcCCCEEEEEeCCcEEEcCCCC-CCCCC
Confidence            578899887     799999999999999999999999987           8999999999999999999997 78999


Q ss_pred             CCcccCCCCCCCc-cccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCcc
Q 019054           83 GESIYGLKFEDEN-FELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (347)
Q Consensus        83 ~~~~~~~~~~~e~-~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P  161 (347)
                      ++|+||.+|+||. +.++|+++|+||||+.||||+||||||++++.|+||++|+|||+|++||++|++|+.++++..++|
T Consensus       101 g~si~g~~~~dE~~~~l~h~~~G~lsMAn~gpns~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P  180 (196)
T 2b71_A          101 GKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKP  180 (196)
T ss_dssp             CCBTTBSCBCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTCCB
T ss_pred             CCccCCCcccccccCCcCcCCCeEEEEccCCCCCcccEEEEECCCCCccCCCEeEEEEEecCHHHHHHHHhCCcCCCCCC
Confidence            9999999999995 589999999999999999999999999999999999999999999999999999999999888999


Q ss_pred             ccceEeccceecCC
Q 019054          162 IADVTITDCGEIPE  175 (347)
Q Consensus       162 ~~~v~I~~~g~~~~  175 (347)
                      ..+|.|.+|.++..
T Consensus       181 ~~~i~I~~~~i~~d  194 (196)
T 2b71_A          181 IFDLKILRTSTAVN  194 (196)
T ss_dssp             SSCCEEEEEEC---
T ss_pred             CCCeEEEEEEEecC
Confidence            99999999998753

>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1

Probab=100.00  E-value=5.1e-48  Score=313.69  Aligned_cols=154  Identities=47%  Similarity=0.700  Sum_probs=145.1

Q ss_pred             CCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCC
Q 019054            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG   82 (347)
Q Consensus         3 ~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~   82 (347)
                      .+.|.++++     .|+|+||||++.||+||+||++||+.+           ||+|+.||||+|+|||||||+. ++|+|
T Consensus         5 ~~~v~~~T~-----~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Y~g~~fhRvi~~f~iQgGd~~-~~g~g   67 (160)
T 2fu0_A            5 PKSAIIYTT-----MGDIHISLFYKECKKTVQNFSVHSING-----------YYNNCIFHRVIKHFMVQTGDPS-GDGTG   67 (160)
T ss_dssp             CCEEEEEET-----TEEEEEEECTTTCHHHHHHHHHHHHTT-----------TTTTCBCCEEETTTEEEECCTT-SSSSC
T ss_pred             CCEEEEEec-----CccEEEEEeCCCChHHHHHHHHHhccC-----------ccCCCEEEEEECCCEEEeCCcC-CCCCC
Confidence            456777776     799999999999999999999999987           8999999999999999999986 78999


Q ss_pred             CCcccCCCCCCCcc-ccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCcc
Q 019054           83 GESIYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (347)
Q Consensus        83 ~~~~~~~~~~~e~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P  161 (347)
                      ++|+||.+|+||++ .++|.++|+|||||.+|||++|||||++.+.|+||++|+|||+|++||+++++|++++++.+++|
T Consensus        68 g~si~g~~~~dE~~~~l~h~~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~P  147 (160)
T 2fu0_A           68 GESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKP  147 (160)
T ss_dssp             CCCTTSSCBCCCCBTTBCSSSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCB
T ss_pred             CCcccCCCccccccCCcccCCceEEEEecCCCCCcccEEEEECCCCCccCCCcEEEEEEEcCHHHHHHHHhCCcCCCCCc
Confidence            99999999999998 69999999999999999999999999999999999999999999999999999999999988999


Q ss_pred             ccceEeccceec
Q 019054          162 IADVTITDCGEI  173 (347)
Q Consensus       162 ~~~v~I~~~g~~  173 (347)
                      ..+|.|.++.+.
T Consensus       148 ~~~v~I~~~~v~  159 (160)
T 2fu0_A          148 LEDIKILNIKIN  159 (160)
T ss_dssp             SSCCBEEEEEEC
T ss_pred             CCCeEEEEEEEe
Confidence            999999988764

>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1

Probab=100.00  E-value=7.4e-48  Score=321.07  Aligned_cols=158  Identities=43%  Similarity=0.724  Sum_probs=147.1

Q ss_pred             CeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCC
Q 019054            4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGG   83 (347)
Q Consensus         4 ~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~   83 (347)
                      ..|.|+++     .|+|+||||++.||+||+||++||+.+           ||+|+.||||+|+|||||||++ ++|+|+
T Consensus        20 ~~v~l~T~-----~G~I~ieL~~~~aP~tv~NF~~L~~~g-----------~Ydg~~FhRVi~~f~iQgGd~~-~~g~Gg   82 (197)
T 1zkc_A           20 GYVRLHTN-----KGDLNLELHCDLTPKTCENFIRLCKKH-----------YYDGTIFHRSIRNFVIQGGDPT-GTGTGG   82 (197)
T ss_dssp             EEEEEEET-----TEEEEEEECTTTSHHHHHHHHHHHHTT-----------TTTTEEEEEEETTTEEEECCTT-SSSSCC
T ss_pred             cEEEEEeC-----CccEEEEEcCCCCcHHHHHHHHHHhcC-----------CCCCCEEEEEeCCCEEEcCCCC-CCCCCC
Confidence            45666655     799999999999999999999999987           8999999999999999999987 789999


Q ss_pred             CcccCCCCCCC-ccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCC-Ccc
Q 019054           84 ESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDN-DCP  161 (347)
Q Consensus        84 ~~~~~~~~~~e-~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~-~~P  161 (347)
                      +|+||.+|+|| ++.++|+++|+|||||.+|||++|||||++.+.|+||++|+|||+|++||++|++|+.++++.. ++|
T Consensus        83 ~si~g~~f~dE~~~~l~h~~~G~lsMAn~gp~sngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~~P  162 (197)
T 1zkc_A           83 ESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRP  162 (197)
T ss_dssp             CBTTBSCBCCCCCTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTTCCB
T ss_pred             CccCCCccccccCcCcCCCCceEEEEecCCCCCcccEEEEEcCCCCccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCc
Confidence            99999999999 5789999999999999999999999999999999999999999999999999999999999886 899


Q ss_pred             ccceEeccceecCCCCC
Q 019054          162 IADVTITDCGEIPEGAD  178 (347)
Q Consensus       162 ~~~v~I~~~g~~~~~~~  178 (347)
                      ..+|.|.+|+++..+++
T Consensus       163 ~~~i~I~~~~v~~dPf~  179 (197)
T 1zkc_A          163 KEEIRIDATTVFVDPYE  179 (197)
T ss_dssp             SSCCEEEEEEEEECTTH
T ss_pred             CCCeEEEEEEEEcCCcc
Confidence            99999999999865443

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens}

Probab=100.00  E-value=2.1e-47  Score=319.43  Aligned_cols=161  Identities=48%  Similarity=0.818  Sum_probs=151.6

Q ss_pred             CCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCC
Q 019054            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT   81 (347)
Q Consensus         2 ~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~   81 (347)
                      .++.|.|+++     .|+|+||||++.||+||+||++||+.+           ||+|+.||||+|+|||||||++ ++|+
T Consensus        10 ~~~~V~l~T~-----~G~I~ieL~~d~aP~tv~NF~~L~~~g-----------~Ydg~~FhRVi~~F~iQgGd~~-~~g~   72 (203)
T 2k7n_A           10 QPPNVYLETS-----MGIIVLELYWKHAPKTCKNFAELARRG-----------YYNGTKFHRIIKDFMIQGGDPT-GTGR   72 (203)
T ss_dssp             CCSEEEEEES-----SCEEEEEECTTTCTTHHHHHHHHHHHT-----------CGGGCEEEEEETTTEEEEECSS-SSSS
T ss_pred             CCCEEEEEeC-----CCcEEEEEccCCCcHHHHHHHHHHhcC-----------ccCCCEEEEEeCCcEEEcCCCC-CCCC
Confidence            4688999988     699999999999999999999999987           8999999999999999999987 7889


Q ss_pred             CCCcccCCCCCCCc-cccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCc
Q 019054           82 GGESIYGLKFEDEN-FELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC  160 (347)
Q Consensus        82 ~~~~~~~~~~~~e~-~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~  160 (347)
                      +++|+||..|+||+ +.++|.++|+|||||.+||+++|||||++.+.|+||++|+|||+|++||++|++|+.++++..++
T Consensus        73 gg~si~g~~f~dE~~~~l~h~~~G~lsMAn~gpnsngSQFFIt~~~~~~LDg~~tVFG~VveGmdvv~kI~~~~t~~~~~  152 (203)
T 2k7n_A           73 GGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDR  152 (203)
T ss_dssp             CCCTTSCSCBCCCCCCSSCCCSSCEEEEEESSTTCEEEEEEEESSCCCSSTTTSCEEEEEESCHHHHHHHHSCCEEETTE
T ss_pred             CCCccCCCcccccccccccCCCCeEEEEeeCCCCCcccEEEEEcCCCCccCCCeeEEEEEEcCHHHHHHHHcCCcCCCCC
Confidence            99999999999998 48999999999999999999999999999999999999999999999999999999999988889


Q ss_pred             cccceEeccceecCCCCCC
Q 019054          161 PIADVTITDCGEIPEGADD  179 (347)
Q Consensus       161 P~~~v~I~~~g~~~~~~~~  179 (347)
                      |..+|+|.+|.++......
T Consensus       153 P~~~V~I~~~~v~~~~~s~  171 (203)
T 2k7n_A          153 PVDDVKIIKAYPSGGGGSG  171 (203)
T ss_dssp             ECCCCBEEEEEECCCCCCC
T ss_pred             cCCCeEEEEEEEEecCCCC
Confidence            9999999999999765544

>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1

Probab=100.00  E-value=1.8e-47  Score=314.67  Aligned_cols=147  Identities=52%  Similarity=0.762  Sum_probs=138.9

Q ss_pred             CeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCCcccCCCCCC
Q 019054           14 VELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFED   93 (347)
Q Consensus        14 ~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~   93 (347)
                      .++.|+|+||||++.||+||+||++||+.+           ||+||.||||+|+|||||||+. ++|+|++|+||..|+|
T Consensus        27 ~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Y~g~~FhRvi~~f~iQgGd~~-~~g~gg~si~g~~~~d   94 (176)
T 2a2n_A           27 HTSMGDIHTKLFPVECPKTVENFCVHSRNG-----------YYNGHTFHRIIKGFMIQTGDPT-GTGMGGESIWGGEFED   94 (176)
T ss_dssp             EETTEEEEEEECTTTCHHHHHHHHHHHHTT-----------TTTTCBCCEEETTTEEEECCTT-SSSSCCCCTTSSCBCC
T ss_pred             EecCccEEEEEeCCCChHHHHHHHHHhhcC-----------ccCCCEEEEEECCcEEEccCCC-CCCCCCCcccCCcccc
Confidence            345899999999999999999999999987           8999999999999999999986 6799999999999999


Q ss_pred             Ccc-ccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCC-CCCccccceEeccce
Q 019054           94 ENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTG-DNDCPIADVTITDCG  171 (347)
Q Consensus        94 e~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~-~~~~P~~~v~I~~~g  171 (347)
                      |++ .++|.++|+|||||.+|||++|||||++.+.|+||++|+|||+|++||+++++|+.++++ .+++|..+|.|.++.
T Consensus        95 E~~~~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~~P~~~v~I~~v~  174 (176)
T 2a2n_A           95 EFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINIT  174 (176)
T ss_dssp             CCCTTCCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTTCCBSSCCBEEEEE
T ss_pred             ccccccccCCceEEEEEeCCCCCcccEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHcCCccCCCCccCCCeEEEEEE
Confidence            998 699999999999999999999999999999999999999999999999999999999998 568999999998875


Q ss_pred             e
Q 019054          172 E  172 (347)
Q Consensus       172 ~  172 (347)
                      +
T Consensus       175 v  175 (176)
T 2a2n_A          175 V  175 (176)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}

Probab=100.00  E-value=3.6e-47  Score=320.22  Aligned_cols=161  Identities=34%  Similarity=0.564  Sum_probs=142.6

Q ss_pred             CCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEec-----cCCC
Q 019054            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGG-----DISA   77 (347)
Q Consensus         3 ~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G-----~~~~   77 (347)
                      +..|.|+++     .|+|+||||++.||+||+||++||+.+           ||+||.||||+|+||||||     |++ 
T Consensus         6 ~~~v~l~T~-----~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Ydg~~FhRvi~~f~iQgG~~~~~Dp~-   68 (201)
T 3bo7_A            6 KGYLRIVTT-----QGSLNIELHADMAPRACDSFLRLCAVK-----------YFDDTIFHRCIRNFMIQGGRAELRQPS-   68 (201)
T ss_dssp             CEEEEEEET-----TEEEEEEECTTTCHHHHHHHHHHHHTT-----------TTTTCBEEEEETTTEEEECCGGGCCC--
T ss_pred             ceEEEEEeC-----CCCEEEEEcCCCCcHHHHHHHHHHhcC-----------ccCCCEEEEeeCCCEEEcCcccccCCC-
Confidence            456667666     799999999999999999999999987           8999999999999999999     987 


Q ss_pred             CCCCCCCccc-------CCCCCCC-ccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHH
Q 019054           78 GDGTGGESIY-------GLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRS  149 (347)
Q Consensus        78 ~~~~~~~~~~-------~~~~~~e-~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~  149 (347)
                      ++|+|++|+|       |.+|+|| ++.++|+++|+|||||.||||+||||||++.+.|+||++|+|||+|++||++|++
T Consensus        69 ~~g~gg~si~~~~~~~~g~~f~dE~~~~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~  148 (201)
T 3bo7_A           69 KKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNKHTIFGRVVGGLDVLRQ  148 (201)
T ss_dssp             ------CCSSCCCSSTTCCCBCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHH
T ss_pred             CCCCCCccccccccccCCCcccCcccCCCCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEecCHHHHHH
Confidence            7899999999       8999999 5789999999999999999999999999999999999999999999999999999


Q ss_pred             HhcccCCCCCccccceEeccceecCCCCCCC
Q 019054          150 IEHVMTGDNDCPIADVTITDCGEIPEGADDG  180 (347)
Q Consensus       150 I~~~~~~~~~~P~~~v~I~~~g~~~~~~~~~  180 (347)
                      |+.++++..++|..+|.|.+|+++.+++++.
T Consensus       149 I~~~~t~~~~~P~~~i~I~~~~v~~dPf~d~  179 (201)
T 3bo7_A          149 WEKLETDKKDKPLKPPKVEEIIVFKNPFEDA  179 (201)
T ss_dssp             HTTCCBCTTSCBSSCCBEEEEEEEECCC---
T ss_pred             HHhCCcCCCCCcCCCeEEEEEEEEcCCccCH
Confidence            9999999889999999999999997776653

>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1

Probab=100.00  E-value=7.8e-47  Score=314.17  Aligned_cols=164  Identities=44%  Similarity=0.713  Sum_probs=145.8

Q ss_pred             CCCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCC-CCC---CcccccCCeeEEEecCceEEeccCC
Q 019054            1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGP-NTG---VPLHYKGVRFHRVIKGFMIQGGDIS   76 (347)
Q Consensus         1 ~~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~-~~~---~~~~y~g~~~~rv~~~~~iq~G~~~   76 (347)
                      |+++.|.|+++     .|+|+||||++.||+||+||++||+|.++... .+|   +..||+|+.||||+|+|||||||+.
T Consensus        21 ~~~~~v~l~t~-----~G~I~ieL~~~~aP~tv~NF~~L~tG~~~~~~~~~g~~~~~~~Y~g~~FhRVi~~fmiQgGd~~   95 (191)
T 1w74_A           21 LATATATLHTN-----RGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPT   95 (191)
T ss_dssp             CCSEEEEEEET-----TEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCSSTTEEEEEEETTTEEEECCTT
T ss_pred             CCCeEEEEEec-----ceeEEEEEcCCCChHHHHHHHHHhcCCcccccccccccccCCccCCCEEEEEeCCCEEecCCCC
Confidence            34667777776     79999999999999999999999998766421 112   2369999999999999999999985


Q ss_pred             CCCCCCCCcccCCCCCCC-ccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEe--ChHHHHHHhcc
Q 019054           77 AGDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIK--GMGVVRSIEHV  153 (347)
Q Consensus        77 ~~~~~~~~~~~~~~~~~e-~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~--g~~vl~~I~~~  153 (347)
                       ++|+|+   ||.+|+|| ++.++|+++|+|||||.|||||+|||||++.+.|+||++|+|||+|++  ||++|++|+++
T Consensus        96 -g~G~gg---~g~~f~dE~~~~l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~~~Gmdvv~~I~~~  171 (191)
T 1w74_A           96 -GTGRGG---PGYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKT  171 (191)
T ss_dssp             -SSSSCC---SSCCBCCCCCTTCCSCSSSEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEECSHHHHHHHHHHHTS
T ss_pred             -CCCCCC---CCCccccccccCCCcCCCcEEEEeeCCCCCccceEEEEcCCCcccCCCeeEEEEEEECCCHHHHHHHHcC
Confidence             677776   58899999 578999999999999999999999999999999999999999999999  99999999999


Q ss_pred             cCCCCCccccceEeccceec
Q 019054          154 MTGDNDCPIADVTITDCGEI  173 (347)
Q Consensus       154 ~~~~~~~P~~~v~I~~~g~~  173 (347)
                      +++.+++|..+|.|.+|++.
T Consensus       172 ~t~~~~~P~~~v~I~~~~i~  191 (191)
T 1w74_A          172 ATDGNDRPTDPVVIESITIS  191 (191)
T ss_dssp             CBCTTSCBSSCCEEEEEEEC
T ss_pred             CcCCCCCcCCCeEEEEEEEC
Confidence            99888999999999999763

>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens}

Probab=100.00  E-value=1e-46  Score=312.26  Aligned_cols=158  Identities=40%  Similarity=0.727  Sum_probs=147.6

Q ss_pred             CCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCC
Q 019054            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG   82 (347)
Q Consensus         3 ~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~   82 (347)
                      ++.|+|+|+     .|+|+||||++.||+||+||++||+.+           ||+|+.||||+|+|||||||++ ++|+|
T Consensus        24 ~~~V~l~T~-----~G~I~ieL~~~~aP~tv~NF~~L~~~g-----------~Y~g~~FhRvi~~f~iQgGd~~-~~g~g   86 (185)
T 2hq6_A           24 NGKVLLKTT-----AGDIDIELWSKEAPKACRNFIQLCLEA-----------YYDNTIFHRVVPGFIVQGGDPT-GTGSG   86 (185)
T ss_dssp             BCEEEEEET-----TEEEEEEEBTTTCHHHHHHHHHHHHTT-----------TTTTEECCEEETTTEEEECCTT-SSSSC
T ss_pred             CCEEEEEeC-----CccEEEEEeCCCCcHHHHHHHHHhhcC-----------ccCCCEEEEEECCCEEEcCCCC-CCCCC
Confidence            678999997     799999999999999999999999987           8999999999999999999986 78999


Q ss_pred             CCcccCCCCCCCcc-ccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHH--HHHhcccCCCCC
Q 019054           83 GESIYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVV--RSIEHVMTGDND  159 (347)
Q Consensus        83 ~~~~~~~~~~~e~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl--~~I~~~~~~~~~  159 (347)
                      ++++||.+|+||+. .++|+++|+|||||.+||+++|||||++++.|+||++|+|||+|+ |++++  .+|+.++++.++
T Consensus        87 g~si~g~~~~dE~~~~l~h~~~G~lsMA~~g~~s~gSQFFIt~~~~~~LDg~~tVFG~V~-G~~v~~~~~i~~~~~~~~~  165 (185)
T 2hq6_A           87 GESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVT-GDTVYNMLRLSEVDIDDDE  165 (185)
T ss_dssp             CCCTTSSCBCCCCBTTBCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEC-GGGHHHHHHTTCSCBCTTS
T ss_pred             CCcccCCccccccccCcccCCCeEEEEccCCCCCccceEEEECCCCCccCCCceEEEEEE-eCeeehhhHHhhCCcCCCC
Confidence            99999999999986 688999999999999999999999999999999999999999999 88774  678899888889


Q ss_pred             ccccceEeccceecCCCCC
Q 019054          160 CPIADVTITDCGEIPEGAD  178 (347)
Q Consensus       160 ~P~~~v~I~~~g~~~~~~~  178 (347)
                      +|..+|+|.+|+++..+++
T Consensus       166 ~P~~~v~I~~~~v~~~Pf~  184 (185)
T 2hq6_A          166 RPHNPHKIKSCEVLFNPFD  184 (185)
T ss_dssp             CBSSCCEEEEEEEEECTTC
T ss_pred             CCCCCeEEEEEEEeCCCCC
Confidence            9999999999999976654

>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A

Probab=100.00  E-value=2.6e-45  Score=300.52  Aligned_cols=153  Identities=31%  Similarity=0.502  Sum_probs=138.3

Q ss_pred             CCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCC
Q 019054            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT   81 (347)
Q Consensus         2 ~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~   81 (347)
                      .||.|+|+++     .|+|+||||++.||+||+||++||+.+           ||+||.||||+|+|||||||++...  
T Consensus         3 ~~~~v~~~t~-----~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Y~g~~FhRvi~~f~iQgGd~~~~~--   64 (166)
T 1v9t_A            3 GDPHVLLTTS-----AGNIELELDKQKAPVSVQNFVDYVNSG-----------FYNNTTFHRVIPGFMIQGGGFTEQM--   64 (166)
T ss_dssp             CSCEEEEEET-----TEEEEEEECTTTCHHHHHHHHHHHHTT-----------TTTTCBEEEEETTTEEEESSBCTTC--
T ss_pred             CCeEEEEEeC-----CccEEEEEcCCCCcHHHHHHHHHhccC-----------CCCCCEEEEEECCcEEEcCCcCcCC--
Confidence            4899999987     799999999999999999999999886           8999999999999999999987433  


Q ss_pred             CCCcccCCCCCCCccccCCCCccEEEeeeC-CCCCCCceEEEecCCCCCCCCC-----CceeeEEEeChHHHHHHhcccC
Q 019054           82 GGESIYGLKFEDENFELKHERKGMLSMANA-GPNTNGSQFFITTTRTSHLDGK-----HVVFGRVIKGMGVVRSIEHVMT  155 (347)
Q Consensus        82 ~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~-~~~~~~sqF~i~~~~~~~l~~~-----~~vfG~v~~g~~vl~~I~~~~~  155 (347)
                       +.+.+|.+|+||+....|+++|+|||||. +|||++|||||++.+.|+||++     |+|||+|++||++|++|+++++
T Consensus        65 -~~~~~g~~~~dE~~~~l~~~~G~lsmA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~tvFG~Vv~G~dvv~~I~~~~~  143 (166)
T 1v9t_A           65 -QQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPT  143 (166)
T ss_dssp             -CBCCCCCCBCCCGGGSCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSCCCCCEEEEEEECHHHHHHHHTSCE
T ss_pred             -CCCCCCCcccccccccccCCceEEEEeecCCCCCccceEEEEeCCccccCCccCcCCeeEEEEEecCHHHHHHHHhCCC
Confidence             23346888999998766778999999997 5999999999999999999998     9999999999999999999998


Q ss_pred             CC----CCccccceEeccceec
Q 019054          156 GD----NDCPIADVTITDCGEI  173 (347)
Q Consensus       156 ~~----~~~P~~~v~I~~~g~~  173 (347)
                      +.    .+.|..+|.|.+|.++
T Consensus       144 ~~~~~~~~~P~~~v~I~~~~v~  165 (166)
T 1v9t_A          144 HDVGPYQNVPSKPVVILSATVL  165 (166)
T ss_dssp             EEETTEEEEESSCCBEEEEEEC
T ss_pred             CCCCccCCCcCCCeEEEEEEEe
Confidence            75    3689999999999875

>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=100.00  E-value=3.9e-45  Score=312.75  Aligned_cols=160  Identities=34%  Similarity=0.577  Sum_probs=147.6

Q ss_pred             CCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCC
Q 019054            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG   82 (347)
Q Consensus         3 ~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~   82 (347)
                      ++.|+|+|+     .|+|+||||++.||+||+||++||+.+           ||+||.||||+|+|||||||++ ++|+|
T Consensus        21 ~~~V~l~T~-----~G~I~ieL~~d~aP~tv~NF~~L~~~g-----------~Ydgt~FhRVi~~FmiQgGdp~-~~G~G   83 (232)
T 3bkp_A           21 RGKVVLHTS-----LGDLDVELWARECPLACRNFVQLCLEG-----------YYVNTIFHRVVKDFIVQGGDPT-GTGRG   83 (232)
T ss_dssp             BCEEEEEET-----TEEEEEEEBTTTCHHHHHHHHHHHHHT-----------TTTTCBEEEEETTTEEEECCTT-SSSSC
T ss_pred             CCEEEEEEC-----CCcEEEEEcCCCCcHHHHHHHHHhhcC-----------ccCCCEEEEEeCCCEEEcCCCC-CCCCC
Confidence            568999987     799999999999999999999999987           8999999999999999999997 78999


Q ss_pred             CCccc--CCCCCCCcc-ccCCCCccEEEeeeCCC--------------CCCCceEEEecCCCCCCCCCCceeeEEEeChH
Q 019054           83 GESIY--GLKFEDENF-ELKHERKGMLSMANAGP--------------NTNGSQFFITTTRTSHLDGKHVVFGRVIKGMG  145 (347)
Q Consensus        83 ~~~~~--~~~~~~e~~-~~~~~~~g~~~~~~~~~--------------~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~  145 (347)
                      ++++|  |.+|+||+. .++|+++|+||||+.++              ++++|||||++.+.|+||++|+|||+|+ |++
T Consensus        84 g~si~~~g~~f~dE~~~~l~h~~~G~lsMA~~g~~~~~~~n~e~g~~~~sngSQFFIt~~~~p~LDg~~tVFG~Vv-g~~  162 (232)
T 3bkp_A           84 GADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLARADVLNNAYTLFGKVT-GHT  162 (232)
T ss_dssp             CCCCTTTTCCBCCCCCTTCCCCSTTEEEECCCC----------------CBCSCEEEESSCCGGGTTTSCEEEEEC-GGG
T ss_pred             CCccccCCCccCCccccCcCcCCCeEEEEeccCCcccccccccccccCCCcCCEEEEECCCCcccCCCccEEEEEE-eCc
Confidence            99999  999999986 78899999999999996              6999999999999999999999999999 776


Q ss_pred             H--HHHHhcccCCCCCccccceEeccceecCCCCCCC
Q 019054          146 V--VRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG  180 (347)
Q Consensus       146 v--l~~I~~~~~~~~~~P~~~v~I~~~g~~~~~~~~~  180 (347)
                      +  +++|+.++++.+++|..+|.|.+|+++..++++.
T Consensus       163 v~~v~kI~~~~t~~~~~P~~~i~I~~~~vl~dPf~d~  199 (232)
T 3bkp_A          163 LYNLMKFNDLEVGKEDRPMTPPFIKSVDVLWNPFEDL  199 (232)
T ss_dssp             HHHHHHHTTSCBCGGGCBSSCCBEEEEEEEECCCTTC
T ss_pred             hHHHHHHHcCCcCCCCCcCCCeEEEEEEEEcCChhhh
Confidence            6  7899999998889999999999999998777654

>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} SCOP: b.62.1.1 PDB: 3t1u_A*

Probab=100.00  E-value=3.1e-44  Score=294.96  Aligned_cols=153  Identities=33%  Similarity=0.502  Sum_probs=137.1

Q ss_pred             CCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCC
Q 019054            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT   81 (347)
Q Consensus         2 ~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~   81 (347)
                      .+|.|.|+++     .|+|+||||++.||+||+||++||+.+           ||+|+.||||+|+|||||||++...  
T Consensus         2 p~~~v~l~T~-----~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Y~g~~FhRvi~~f~iQgGd~~~~~--   63 (167)
T 3s6m_A            2 PGSMVELHTN-----HGVIKLELDEAKAPKTVENFLNYVKKG-----------HYDGTIFHRVINGFMIQGGGFEPGL--   63 (167)
T ss_dssp             CCCEEEEEET-----TEEEEEEECTTTCHHHHHHHHHHHHHT-----------TTTTEECCEEETTTEEEESSEETTT--
T ss_pred             CCcEEEEEeC-----CceEEEEEeCCCCcHHHHHHHHHhhhc-----------ccCCCEeEEecCCcEEEeccccCCC--
Confidence            4788999887     799999999999999999999999987           8999999999999999999987433  


Q ss_pred             CCCcccCCCCCCCccccCCCCccEEEeee-CCCCCCCceEEEecCCCCCCCCC--------CceeeEEEeChHHHHHHhc
Q 019054           82 GGESIYGLKFEDENFELKHERKGMLSMAN-AGPNTNGSQFFITTTRTSHLDGK--------HVVFGRVIKGMGVVRSIEH  152 (347)
Q Consensus        82 ~~~~~~~~~~~~e~~~~~~~~~g~~~~~~-~~~~~~~sqF~i~~~~~~~l~~~--------~~vfG~v~~g~~vl~~I~~  152 (347)
                       +.+.++.+|++|.....++++|+||||| .+|||++|||||++.+.++||++        |+|||+|++||+++++|++
T Consensus        64 -~~~~~~~~~~~E~~~~l~~~~G~lsmA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~~~~~VFG~Vv~G~dvv~~I~~  142 (167)
T 3s6m_A           64 -KQKPTDAPIANEANNGLKNDTYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKA  142 (167)
T ss_dssp             -EECCCCCCBCCCGGGCCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTCCCCEEEEEEECHHHHHHHTT
T ss_pred             -CCCCCCCccCCcccccccCCccEEEEecCCCCCCccceEEEEcCCchhcCCcccccCCCCceEEEEEEcCHHHHHHHHc
Confidence             2345688899997654556899999999 57999999999999999999998        9999999999999999999


Q ss_pred             ccCCC----CCccccceEeccceec
Q 019054          153 VMTGD----NDCPIADVTITDCGEI  173 (347)
Q Consensus       153 ~~~~~----~~~P~~~v~I~~~g~~  173 (347)
                      ++++.    +++|..+|.|.++.++
T Consensus       143 ~~t~~~~~~~~~P~~~v~I~~~~il  167 (167)
T 3s6m_A          143 VKTGSKGFHQDVPNDDVVIEKAVVV  167 (167)
T ss_dssp             SCBBC---CBTCBSSCCEEEEEEEC
T ss_pred             CCcCCCcccCCCcCCCeEEEEEEEC
Confidence            99987    5899999999988764

>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A

Probab=100.00  E-value=2.4e-44  Score=294.16  Aligned_cols=149  Identities=32%  Similarity=0.546  Sum_probs=133.3

Q ss_pred             EEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCCc
Q 019054            6 CFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGES   85 (347)
Q Consensus         6 v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~   85 (347)
                      |.|+++     .|+|+||||++.||+||+||++||+.+           ||+|+.||||+|+|||||||++.+.   +.+
T Consensus         2 v~l~T~-----~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Y~g~~FhRvi~~f~iQgGd~~~~~---g~~   62 (164)
T 1lop_A            2 VTFHTN-----HGDIVIKTFDDKAPETVKNFLDYCREG-----------FYNNTIFHRVINGFMIQGGGFEPGM---KQK   62 (164)
T ss_dssp             EEEEET-----TEEEEEEECTTTSHHHHHHHHHHHHTT-----------TTTTEECCEEETTTEEEESSEETTT---EEC
T ss_pred             EEEEeC-----CCCEEEEEeCCCCcHHHHHHHHHHhcC-----------CCCCCEEEEEeCCceEecCCcccCC---CcC
Confidence            455555     799999999999999999999999987           8999999999999999999997433   456


Q ss_pred             ccCCCCCCCccccCCCCccEEEeeeC-CCCCCCceEEEecCCCCCCCCC--------CceeeEEEeChHHHHHHhcccCC
Q 019054           86 IYGLKFEDENFELKHERKGMLSMANA-GPNTNGSQFFITTTRTSHLDGK--------HVVFGRVIKGMGVVRSIEHVMTG  156 (347)
Q Consensus        86 ~~~~~~~~e~~~~~~~~~g~~~~~~~-~~~~~~sqF~i~~~~~~~l~~~--------~~vfG~v~~g~~vl~~I~~~~~~  156 (347)
                      ++|.+|+||+....++++|+||||+. +|||++|||||++.+.|+||++        |+|||+|++||++|++|++++++
T Consensus        63 ~~g~~~~dE~~~~l~~~~G~lsmA~~~~p~s~gSQFfI~~~~~~~Ld~~~~~~~~~~~tvFG~Vv~G~dvv~~I~~~~t~  142 (164)
T 1lop_A           63 ATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATG  142 (164)
T ss_dssp             CCCCCBCCCCCSSCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTSCCCEEEEEEECHHHHHHHHTSCEE
T ss_pred             CCCCccccccccccccCccEEEEeecCCCCCccceEEEEcCCccccCCccccccCCceEEEEEEecCHHHHHHHHhCCcC
Confidence            78999999987544447999999975 6999999999999999999998        99999999999999999999987


Q ss_pred             C----CCccccceEeccceec
Q 019054          157 D----NDCPIADVTITDCGEI  173 (347)
Q Consensus       157 ~----~~~P~~~v~I~~~g~~  173 (347)
                      .    .++|..+|.|.+|.++
T Consensus       143 ~~~~~~~~P~~~v~I~~~~v~  163 (164)
T 1lop_A          143 RSGMHQDVPKEDVIIESVTVS  163 (164)
T ss_dssp             EETTEEEEESSCCEEEEEEEC
T ss_pred             CccccCCCcCCCeEEEEEEEe
Confidence            5    4789999999999875

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}

Probab=100.00  E-value=3e-39  Score=291.57  Aligned_cols=137  Identities=25%  Similarity=0.402  Sum_probs=123.4

Q ss_pred             CCeEEEEEEECC---eeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCC
Q 019054            3 RPRCFLDISIGV---ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGD   79 (347)
Q Consensus         3 ~~~v~~~~~~~~---~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~   79 (347)
                      ++.|.|+|++++   ++.|+|+|+||++.||+||+||++||+.+           ||+|+.|||| |||||||||++ ++
T Consensus       170 ra~V~m~t~~~~~~~~~~G~I~IeL~~d~AP~Tv~NFl~L~~~G-----------fYdGt~FHRV-~gFmIQgGDp~-g~  236 (369)
T 3rfy_A          170 RASVDMKVKIKDNPNIEDCVFRIVLDGYNAPVTAGNFVDLVERH-----------FYDGMEIQRS-DGFVVQTGDPE-GP  236 (369)
T ss_dssp             EEEEEEEEECCSCSSCSEEEEEEEEETTTCHHHHHHHHHHHHTT-----------TTTTEECEEE-EEEEECCCCCC-CC
T ss_pred             CeEEEEEEeccCCCcccceEEEEEEeCCCCcHHHHHHHHHhhcC-----------CcCCCeeeee-CCeeEecCCCC-CC
Confidence            567888888664   36899999999999999999999999987           9999999999 99999999997 56


Q ss_pred             CCC---------------------CCcccCCCCCCCcc-----ccCCCCccEEEeeeC--CCCCCCceEEEec-------
Q 019054           80 GTG---------------------GESIYGLKFEDENF-----ELKHERKGMLSMANA--GPNTNGSQFFITT-------  124 (347)
Q Consensus        80 ~~~---------------------~~~~~~~~~~~e~~-----~~~~~~~g~~~~~~~--~~~~~~sqF~i~~-------  124 (347)
                      |+|                     +.++|+..|++|++     .++|+++|+|||||.  +|||+||||||++       
T Consensus       237 G~G~~~~~~g~~~~iP~E~~~~G~g~piyg~~fedegf~~~~~~L~h~~~G~LsMAns~~gPnSngSQFFItl~d~~L~~  316 (369)
T 3rfy_A          237 AEGFIDPSTEKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEFENDSGSSQVFWLLKESELTP  316 (369)
T ss_dssp             CSCCCSCCCCCCCSSSSSSCSSSSCCSCCCSSTGGGTEEEEEEEECCCCCCCCCCSSCCCCCCCSSCCCCCCCEEEEECS
T ss_pred             CCCccCcccCcCcccCccccccCCCCCcCCCccccccccccccccccCCCceEEEeecCCCCCCccceEEEEecccccCC
Confidence            655                     46789999999865     789999999999998  7999999999999       


Q ss_pred             CCCCCCCCCCceeeEEEeChHHHHHHhc
Q 019054          125 TRTSHLDGKHVVFGRVIKGMGVVRSIEH  152 (347)
Q Consensus       125 ~~~~~l~~~~~vfG~v~~g~~vl~~I~~  152 (347)
                      .+.++||++|+|||+|++||++|++|++
T Consensus       317 ~~~~~LDgkytVFG~VveGmdVVdkI~~  344 (369)
T 3rfy_A          317 SNSNILDGRYAVFGYVTDNEDFLADLKV  344 (369)
T ss_dssp             CCCSSSCSCEEEEEEEEESTTGGGGCCT
T ss_pred             CCCcccCCCeeEEEEEecCHHHHHHHhC
Confidence            4689999999999999999999999987

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.87  E-value=1.1e-21  Score=154.24  Aligned_cols=116  Identities=25%  Similarity=0.426  Sum_probs=111.9

Q ss_pred             HhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 019054          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (347)
Q Consensus       209 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~  288 (347)
                      ++.+..+++.|+.+++.|+|++|+..|+++|+                  .+|....+|.++|.||.++|++++|+.+|+
T Consensus        10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~   71 (126)
T 4gco_A           10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK------------------RDPENAILYSNRAACLTKLMEFQRALDDCD   71 (126)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHhhHHHhhccHHHHHHHHH
Confidence            45788999999999999999999999999999                  899999999999999999999999999999


Q ss_pred             HHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054          289 FAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (347)
Q Consensus       289 ~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  342 (347)
                      +||+++|+++++|+++|.+|..+|++++|+.+|+++++++|++.+++..|+.+.
T Consensus        72 ~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           72 TCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999998764

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.85  E-value=7.4e-21  Score=155.56  Aligned_cols=140  Identities=28%  Similarity=0.427  Sum_probs=125.5

Q ss_pred             HHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHH
Q 019054          207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLD  286 (347)
Q Consensus       207 ~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~  286 (347)
                      +.++.+..++..|+.+++.|+|++|+..|.+++++++.......+.++++....|....++.|+|.||+++|+|++|+.+
T Consensus         6 e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~   85 (162)
T 3rkv_A            6 DKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEET   85 (162)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            44567899999999999999999999999999998776655555555555667899999999999999999999999999


Q ss_pred             HHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHhc
Q 019054          287 TEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG-GIKKELAVAKKKVS  346 (347)
Q Consensus       287 ~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~-~~~~~l~~~~~~~~  346 (347)
                      |++||+++|+++++|+++|.+|..+|+|++|+.+|+++++++|+++ .+...|..++++++
T Consensus        86 ~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~  146 (162)
T 3rkv_A           86 SSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRA  146 (162)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999 78889988887654

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.83  E-value=9.5e-21  Score=152.93  Aligned_cols=132  Identities=12%  Similarity=0.064  Sum_probs=116.3

Q ss_pred             HhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 019054          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (347)
Q Consensus       209 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~  288 (347)
                      ...+..+++.|+.+++.|+|++|+..|++||++.+.....      +.....|....+|.|+|.|+.++|+|++|+.+|+
T Consensus         8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~------~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~   81 (159)
T 2hr2_A            8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE------EAFDHAGFDAFCHAGLAEALAGLRSFDEALHSAD   81 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT------SCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch------hhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            5578899999999999999999999999999965542110      1222455667799999999999999999999999


Q ss_pred             HHhhc-------CCCChhHH----HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          289 FAMRD-------GDDNVKAL----FRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       289 ~al~~-------~p~~~~a~----~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      +||++       +|+++++|    +++|.++..+|++++|+.+|+++++++|++..+...+..+++.++
T Consensus        82 kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~  150 (159)
T 2hr2_A           82 KALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAI  150 (159)
T ss_dssp             HHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHH
T ss_pred             HHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence            99999       99999999    999999999999999999999999999999999998888887764

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.79  E-value=3.9e-19  Score=139.69  Aligned_cols=116  Identities=26%  Similarity=0.353  Sum_probs=106.6

Q ss_pred             HHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHH
Q 019054          208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDT  287 (347)
Q Consensus       208 ~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~  287 (347)
                      ..+.|.+++++|+.+++.|+|++|+.+|++||+                  ++|....+|.|+|.||.++|+|++|+.+|
T Consensus         4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~------------------~~p~~~~~~~nlg~~~~~~~~~~~A~~~~   65 (127)
T 4gcn_A            4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIE------------------LDPSNITFYNNKAAVYFEEKKFAECVQFC   65 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHhHHHHHHHhhhHHHHHHHH
Confidence            345788999999999999999999999999999                  88999999999999999999999999999


Q ss_pred             HHHhhcCCCC-------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054          288 EFAMRDGDDN-------VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (347)
Q Consensus       288 ~~al~~~p~~-------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  342 (347)
                      +++|+++|++       +++|+++|.++..+|++++|++.|+++++++| +++....|..++
T Consensus        66 ~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~-~~~~~~~l~~le  126 (127)
T 4gcn_A           66 EKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR-DPELVKKVKELE  126 (127)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC-CHHHHHHHHHHH
T ss_pred             HHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CHHHHHHHHHhC
Confidence            9999998876       46899999999999999999999999999988 577777777665

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.78  E-value=1.7e-18  Score=135.14  Aligned_cols=117  Identities=20%  Similarity=0.315  Sum_probs=113.0

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+..++..|..+++.|+|++|+..|+++++                  ..|....++.++|.|+.++|++++|+.+++++
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   64 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIK------------------RAPEDARGYSNRAAALAKLMSFPEAIADCNKA   64 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHH------------------hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            577899999999999999999999999999                  88888999999999999999999999999999


Q ss_pred             hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHh
Q 019054          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE------PNDGGIKKELAVAKKKV  345 (347)
Q Consensus       291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~------P~~~~~~~~l~~~~~~~  345 (347)
                      ++++|+++.+++.+|.++..+|++++|+..|+++++++      |.+..+...+..+++++
T Consensus        65 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           65 IEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             HHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999      99999999999998775

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.75  E-value=8.1e-18  Score=136.27  Aligned_cols=115  Identities=17%  Similarity=0.123  Sum_probs=105.7

Q ss_pred             HHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHH
Q 019054          208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDT  287 (347)
Q Consensus       208 ~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~  287 (347)
                      .++.+..+..+|..+++.|+|++|+..|++++.                  .+|.++.+|.++|.|+..+|+|++|+..|
T Consensus        32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~------------------~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~   93 (151)
T 3gyz_A           32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI------------------YDFYNVDYIMGLAAIYQIKEQFQQAADLY   93 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHHccHHHHHHHH
Confidence            345678899999999999999999999999999                  99999999999999999999999999999


Q ss_pred             HHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 019054          288 EFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (347)
Q Consensus       288 ~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~  341 (347)
                      ++|++++|+++.+|+++|.+|..+|++++|+..|++++++.|+++ +.......
T Consensus        94 ~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~-~~~~A~~l  146 (151)
T 3gyz_A           94 AVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK-LKIKAQSY  146 (151)
T ss_dssp             HHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH-HHHHHHHH
T ss_pred             HHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH-HHHHHHHH
Confidence            999999999999999999999999999999999999999999765 44443333

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.72  E-value=2.3e-17  Score=134.94  Aligned_cols=117  Identities=28%  Similarity=0.392  Sum_probs=109.7

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+..+..+|..++..|+|++|+..|+++++                  ..|....+++++|.||.++|+|++|+.+++++
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   71 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALS------------------IAPANPIYLSNRAAAYSASGQHEKAAEDAELA   71 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            678899999999999999999999999999                  88889999999999999999999999999999


Q ss_pred             hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH--HHHHHHHHHHHh
Q 019054          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG--IKKELAVAKKKV  345 (347)
Q Consensus       291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~--~~~~l~~~~~~~  345 (347)
                      ++++|+++.+|+++|.+|..+|++++|+..|+++++++|++..  +...+..+++++
T Consensus        72 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~  128 (164)
T 3sz7_A           72 TVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKI  128 (164)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999887  666666666654

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.72  E-value=1.3e-17  Score=134.76  Aligned_cols=120  Identities=10%  Similarity=0.011  Sum_probs=109.1

Q ss_pred             HhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 019054          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (347)
Q Consensus       209 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~  288 (347)
                      .+.+..++.+|..+++.|+|++|+..|+++++                  .+|..+.+|.++|.+|.++|++++|+.+++
T Consensus        28 p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~------------------~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~   89 (150)
T 4ga2_A           28 RQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN------------------VQERDPKAHRFLGLLYELEENTDKAVECYR   89 (150)
T ss_dssp             HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCchHHHHHHHH
Confidence            34556678899999999999999999999999                  899999999999999999999999999999


Q ss_pred             HHhhcCCCChhHHHHHHHHHHhcCCHHHHHHH-HHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          289 FAMRDGDDNVKALFRQGQAYMALNDVDAAVES-FEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       289 ~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~-~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      ++++++|+++.+++++|.+|..+|++++|... +++|++++|+++.+...+..+....+
T Consensus        90 ~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G  148 (150)
T 4ga2_A           90 RSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG  148 (150)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999887766 58999999999999988888766544

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.72  E-value=5.9e-17  Score=136.70  Aligned_cols=151  Identities=25%  Similarity=0.245  Sum_probs=122.2

Q ss_pred             CCCCCCCCcchhHHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHH
Q 019054          194 WPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSAC  273 (347)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~  273 (347)
                      ++...+.+..+.....+.+..++..|+.++..|+|++|+..|.+++++.+......  ..............++.++|.|
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~~~~~~~~~la~~   97 (198)
T 2fbn_A           20 QGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWD--DQILLDKKKNIEISCNLNLATC   97 (198)
T ss_dssp             --CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCC--CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccc--hhhHHHHHHHHHHHHHHHHHHH
Confidence            33344445566777788899999999999999999999999999998543211000  0001111223345899999999


Q ss_pred             HHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          274 KLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       274 ~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      +.++|+|++|+.+|+++++++|++.++++++|.+|..+|++++|+..|+++++++|.+..++..+..+...++
T Consensus        98 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  170 (198)
T 2fbn_A           98 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK  170 (198)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999998887653

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.71  E-value=6.9e-17  Score=130.28  Aligned_cols=119  Identities=13%  Similarity=0.174  Sum_probs=109.0

Q ss_pred             HHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHH
Q 019054          208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDT  287 (347)
Q Consensus       208 ~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~  287 (347)
                      ..+.+..+..+|..++..|+|++|+..|++++.                  .+|....+|+++|.++..+|++++|+..|
T Consensus        17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~   78 (148)
T 2vgx_A           17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCV------------------LDHYDSRFFLGLGACRQAMGQYDLAIHSY   78 (148)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH------------------cCcccHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            345677889999999999999999999999999                  88999999999999999999999999999


Q ss_pred             HHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054          288 EFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (347)
Q Consensus       288 ~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  344 (347)
                      ++++.++|+++.+++.+|.+|..+|++++|+..|+++++++|+++........+...
T Consensus        79 ~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  135 (148)
T 2vgx_A           79 SYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSM  135 (148)
T ss_dssp             HHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             HHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHH
Confidence            999999999999999999999999999999999999999999887765555555443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.71  E-value=1.3e-16  Score=128.88  Aligned_cols=112  Identities=16%  Similarity=0.076  Sum_probs=103.0

Q ss_pred             HcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC
Q 019054          217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD  296 (347)
Q Consensus       217 ~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~  296 (347)
                      .+|..+..+|++++|+..|++++.                  ..|....+++++|.+|+++|+|++|+.+++++++++|+
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~------------------~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~   63 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTP------------------SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER   63 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSC------------------SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcc------------------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            378899999999999999999999                  88999999999999999999999999999999999999


Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          297 NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       297 ~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      ++.+|+.+|.+|..+|++++|+..|+++++++|++..++..++.+....+
T Consensus        64 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  113 (150)
T 4ga2_A           64 DPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKND  113 (150)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999998876554

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.71  E-value=4.6e-17  Score=155.57  Aligned_cols=143  Identities=24%  Similarity=0.376  Sum_probs=121.6

Q ss_pred             CcchhHHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCCh
Q 019054          201 TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL  280 (347)
Q Consensus       201 ~~~~~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~  280 (347)
                      +.......++.+..++.+|+.+++.|+|++|+..|++|+++.+...   ....+......+....+|+|+|.||+++++|
T Consensus       257 ~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~---~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~  333 (457)
T 1kt0_A          257 WEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEY---GLSEKESKASESFLLAAFLNLAMCYLKLREY  333 (457)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCC---SCCHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             hhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc---cCChHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence            3455666778899999999999999999999999999999654321   1233444556777789999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          281 KGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       281 ~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      ++|+.+|++||+++|+++++|+++|.+|..+|+|++|+.+|+++++++|++..++..+..+...++
T Consensus       334 ~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~  399 (457)
T 1kt0_A          334 TKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAK  399 (457)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999998877653

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.70  E-value=9e-17  Score=147.38  Aligned_cols=143  Identities=26%  Similarity=0.371  Sum_probs=124.9

Q ss_pred             CcchhHHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCCh
Q 019054          201 TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL  280 (347)
Q Consensus       201 ~~~~~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~  280 (347)
                      +...+...++.+..++.+|+.+++.|+|++|+..|++|+++.+....   .+.+......+....+++|+|.||+++|+|
T Consensus       136 ~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~---~~~~~~~~~~~~~~~~~~nla~~~~~~g~~  212 (336)
T 1p5q_A          136 WEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS---FSNEEAQKAQALRLASHLNLAMCHLKLQAF  212 (336)
T ss_dssp             GGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC---CCSHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             hcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhcccc---CChHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence            34456667778999999999999999999999999999996543211   223444557777789999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          281 KGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       281 ~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      ++|+.+|++|++++|+++++++++|.+|..+|++++|+.+|+++++++|++..++..++.+...++
T Consensus       213 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~  278 (336)
T 1p5q_A          213 SAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIR  278 (336)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999988876653

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.70  E-value=9.9e-17  Score=128.06  Aligned_cols=119  Identities=18%  Similarity=0.252  Sum_probs=109.0

Q ss_pred             HhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 019054          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (347)
Q Consensus       209 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~  288 (347)
                      .+.+..+..+|..+++.|+|++|+..|++++.                  .+|....+|.++|.++..+|++++|+..++
T Consensus        15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   76 (142)
T 2xcb_A           15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCM------------------LDHYDARYFLGLGACRQSLGLYEQALQSYS   76 (142)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH------------------hCCccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            34567788999999999999999999999999                  889999999999999999999999999999


Q ss_pred             HHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054          289 FAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV  345 (347)
Q Consensus       289 ~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  345 (347)
                      +++.++|+++.+++.+|.+|..+|++++|+..|+++++++|.++........+...+
T Consensus        77 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l  133 (142)
T 2xcb_A           77 YGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAML  133 (142)
T ss_dssp             HHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHH
T ss_pred             HHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998887666655555443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.68  E-value=1.2e-16  Score=146.79  Aligned_cols=146  Identities=25%  Similarity=0.363  Sum_probs=103.8

Q ss_pred             CCCCcchhHHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHc
Q 019054          198 LDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL  277 (347)
Q Consensus       198 ~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l  277 (347)
                      ...+.......++.+..++..|+.+++.|+|++|+..|++|+++.+....... ..............+|+|+|.||+++
T Consensus       165 ~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~-~~~~~~~~~~l~~~~~~nla~~~~~~  243 (338)
T 2if4_A          165 KARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQL-YGKYQDMALAVKNPCHLNIAACLIKL  243 (338)
T ss_dssp             BTTTBCCHHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTC-CHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred             cccccCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhh-cccHHHHHHHHHHHHHHHHHHHHHHc
Confidence            34456677788889999999999999999999999999999995432110000 00000111222335899999999999


Q ss_pred             CChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054          278 GDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (347)
Q Consensus       278 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  344 (347)
                      ++|++|+.+|++||+++|++.++|+++|.+|..+|+|++|+.+|+++++++|++..++..|..+...
T Consensus       244 g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~  310 (338)
T 2if4_A          244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ  310 (338)
T ss_dssp             TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999998887543

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.65  E-value=6e-16  Score=121.83  Aligned_cols=117  Identities=27%  Similarity=0.384  Sum_probs=110.7

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+..+..+|..++..|+|++|+..|.++++                  ..|....++.++|.|+..+|++++|+.+++++
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a   69 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAIT------------------RNPLVAVYYTNRALCYLKMQQPEQALADCRRA   69 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHh------------------hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            467889999999999999999999999999                  78888999999999999999999999999999


Q ss_pred             hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHh
Q 019054          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN-----DGGIKKELAVAKKKV  345 (347)
Q Consensus       291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~-----~~~~~~~l~~~~~~~  345 (347)
                      ++++|+++.+++.+|.++..+|++++|+..|+++++++|+     +..+...+..++.+.
T Consensus        70 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~  129 (137)
T 3q49_B           70 LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR  129 (137)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred             HHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998     888888888887654

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.65  E-value=1.3e-15  Score=115.83  Aligned_cols=116  Identities=27%  Similarity=0.306  Sum_probs=110.0

Q ss_pred             hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (347)
Q Consensus       210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~  289 (347)
                      +.+..+...|..++..|+|++|+..|++++.                  ..|....++.++|.++..+|++++|+..+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~   63 (118)
T 1elw_A            2 EQVNELKEKGNKALSVGNIDDALQCYSEAIK------------------LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK   63 (118)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcccHHHHHHHHHHHHH------------------HCCCcHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence            3567889999999999999999999999999                  7777889999999999999999999999999


Q ss_pred             HhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 019054          290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK  343 (347)
Q Consensus       290 al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  343 (347)
                      ++.++|++..+++.+|.++..+|++++|+..|+++++++|.+..+...+..+.+
T Consensus        64 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  117 (118)
T 1elw_A           64 TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  117 (118)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence            999999999999999999999999999999999999999999999999988765

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.65  E-value=6.6e-16  Score=154.92  Aligned_cols=87  Identities=21%  Similarity=0.187  Sum_probs=50.4

Q ss_pred             HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 019054          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (347)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l  338 (347)
                      ++|....+|+|+|.++.++|++++|+..|++|++++|+++.+|+++|.+|..+|++++|++.|++|++++|++..++..|
T Consensus        72 l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L  151 (723)
T 4gyw_A           72 ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNL  151 (723)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhh
Confidence            55555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHh
Q 019054          339 AVAKKKV  345 (347)
Q Consensus       339 ~~~~~~~  345 (347)
                      +.+...+
T Consensus       152 ~~~l~~~  158 (723)
T 4gyw_A          152 AHCLQIV  158 (723)
T ss_dssp             HHHHHHT
T ss_pred             hhHHHhc
Confidence            5555443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.64  E-value=2.2e-15  Score=128.36  Aligned_cols=114  Identities=16%  Similarity=0.140  Sum_probs=107.9

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHH----------------HHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTN----------------SSACK  274 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n----------------la~~~  274 (347)
                      .+..+...|..++..|+|++|+..|+++++                  .+|....++++                +|.+|
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~   64 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIA------------------LNIDRTEMYYWTNVDKNSEISSKLATELALAY   64 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCCCChHHHHHhhhcchhhhhHHHHHHHHHHH
Confidence            356778899999999999999999999999                  88888888888                99999


Q ss_pred             HHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054          275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (347)
Q Consensus       275 ~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  342 (347)
                      .++|++++|+..++++++++|+++.+++.+|.+|..+|++++|+..|+++++++|++..++..++.+.
T Consensus        65 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~  132 (208)
T 3urz_A           65 KKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYY  132 (208)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999888764

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.63  E-value=5.1e-15  Score=114.44  Aligned_cols=122  Identities=32%  Similarity=0.409  Sum_probs=114.3

Q ss_pred             HHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHH
Q 019054          208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDT  287 (347)
Q Consensus       208 ~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~  287 (347)
                      ....+..+..+|..++..|+|++|+..|++++.                  ..|....++.++|.++..+|++++|+..+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~   69 (131)
T 2vyi_A            8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIE------------------LNPANAVYFCNRAAAYSKLGNYAGAVQDC   69 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHH------------------cCCCCHHHHHHHHHHHHHhhchHHHHHHH
Confidence            345678899999999999999999999999999                  67777889999999999999999999999


Q ss_pred             HHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcC
Q 019054          288 EFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVSR  347 (347)
Q Consensus       288 ~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  347 (347)
                      ++++.++|++..+++.+|.++..+|++++|+..|+++++++|.+..+...++.+...+++
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           70 ERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred             HHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999998877653

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.62  E-value=2e-15  Score=117.47  Aligned_cols=118  Identities=25%  Similarity=0.347  Sum_probs=111.7

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+.++..+|..++..|+|++|+..|+++++                  ..|....++.++|.++..++++++|+..++++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a   76 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIK------------------RNPKDAKLYSNRAACYTKLLEFQLALKDCEEC   76 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHT------------------TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            577889999999999999999999999999                  67777899999999999999999999999999


Q ss_pred             hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      ++++|.+..+++.+|.++..+|++++|+..|+++++++|.+..+...++.+....+
T Consensus        77 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           77 IQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred             HHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999998887664

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.62  E-value=2e-15  Score=151.37  Aligned_cols=121  Identities=22%  Similarity=0.308  Sum_probs=116.0

Q ss_pred             HhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 019054          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (347)
Q Consensus       209 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~  288 (347)
                      ++.+.++.++|+.+.+.|+|++|+..|++||+                  ++|....+++|+|.+|.++|++++|+.+|+
T Consensus         6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~------------------l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~   67 (723)
T 4gyw_A            6 PTHADSLNNLANIKREQGNIEEAVRLYRKALE------------------VFPEFAAAHSNLASVLQQQGKLQEALMHYK   67 (723)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            45788999999999999999999999999999                  899999999999999999999999999999


Q ss_pred             HHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcC
Q 019054          289 FAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVSR  347 (347)
Q Consensus       289 ~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  347 (347)
                      +|++++|+++.+|+++|.+|..+|++++|++.|++|++++|++..++.+|+.+...+++
T Consensus        68 ~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~  126 (723)
T 4gyw_A           68 EAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGN  126 (723)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999999999877653

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.61  E-value=3.7e-15  Score=118.40  Aligned_cols=116  Identities=33%  Similarity=0.478  Sum_probs=107.8

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhH---HHHHHHHHHHHHHcCChHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTK---SQIFTNSSACKLKLGDLKGALLDT  287 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~nla~~~~~l~~~~~A~~~~  287 (347)
                      .+..+...|..++..|+|++|+..|+++++                  ..|..   ..++.++|.++..++++++|+.++
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~   88 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALG------------------LDATPQDQAVLHRNRAACHLKLEDYDKAETEA   88 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT------------------SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH------------------HcccchHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence            567789999999999999999999999998                  44443   889999999999999999999999


Q ss_pred             HHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054          288 EFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (347)
Q Consensus       288 ~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  344 (347)
                      +++++++|++..+++.+|.++..+|++++|+..|+++++++|++..++..+..+.+.
T Consensus        89 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  145 (148)
T 2dba_A           89 SKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP  145 (148)
T ss_dssp             HHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred             HHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999888654

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.61  E-value=2e-15  Score=121.56  Aligned_cols=105  Identities=17%  Similarity=0.228  Sum_probs=98.0

Q ss_pred             ccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCCh----------HHHHHHHHHHh
Q 019054          222 HYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL----------KGALLDTEFAM  291 (347)
Q Consensus       222 ~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~----------~~A~~~~~~al  291 (347)
                      .-+.++|++|+..|+++++                  ++|..+.+|+|+|.++..++++          ++|+..|++||
T Consensus        12 ~~r~~~feeA~~~~~~Ai~------------------l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL   73 (158)
T 1zu2_A           12 FDRILLFEQIRQDAENTYK------------------SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL   73 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHH
Confidence            3467899999999999999                  9999999999999999999876          59999999999


Q ss_pred             hcCCCChhHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054          292 RDGDDNVKALFRQGQAYMALN-----------DVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (347)
Q Consensus       292 ~~~p~~~~a~~~~g~~~~~~~-----------~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  344 (347)
                      +++|++..+|+++|.+|..+|           +|++|+++|++|++++|++...+..+..+.+.
T Consensus        74 ~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ka  137 (158)
T 1zu2_A           74 LIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKA  137 (158)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTH
T ss_pred             HhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhC
Confidence            999999999999999999885           89999999999999999999999999887765

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.61  E-value=1.2e-15  Score=118.59  Aligned_cols=101  Identities=10%  Similarity=0.006  Sum_probs=91.5

Q ss_pred             HHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC
Q 019054          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (347)
Q Consensus       215 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~  294 (347)
                      +..+|..+++.|++++|+..|+++++                  .+|....+++++|.++..+|++++|+..+++|++++
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~------------------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~   81 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQ------------------KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD   81 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH------------------HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            57788899999999999999999999                  899999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 019054          295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG  333 (347)
Q Consensus       295 p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~  333 (347)
                      |++..+++.+|.+|..+|++++|+..|+++++++|.+..
T Consensus        82 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           82 PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence            999999999999999999999999999999999998754

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.61  E-value=2.5e-15  Score=128.81  Aligned_cols=113  Identities=18%  Similarity=0.242  Sum_probs=61.6

Q ss_pred             HHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 019054          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (347)
Q Consensus       213 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  292 (347)
                      ..+..+|..+++.|++++|+..|+++++                  .+|.+..++.++|.++..+|++++|+..++++++
T Consensus         6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   67 (217)
T 2pl2_A            6 QNPLRLGVQLYALGRYDAALTLFERALK------------------ENPQDPEALYWLARTQLKLGLVNPALENGKTLVA   67 (217)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHT------------------TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3445555555555555555555555555                  4555555555555555555555555555555555


Q ss_pred             cCCCChhHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 019054          293 DGDDNVKALFRQGQAYMAL-----------NDVDAAVESFEKALKLEPNDGGIKKELAVAKK  343 (347)
Q Consensus       293 ~~p~~~~a~~~~g~~~~~~-----------~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  343 (347)
                      ++|+++.+++.+|.++..+           |++++|+..|+++++++|++..++..++.+..
T Consensus        68 ~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~  129 (217)
T 2pl2_A           68 RTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYA  129 (217)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            5555555555555555555           55555555555555555555555555544443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.59  E-value=1.9e-14  Score=116.53  Aligned_cols=117  Identities=24%  Similarity=0.362  Sum_probs=109.4

Q ss_pred             HHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHH
Q 019054          207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLD  286 (347)
Q Consensus       207 ~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~  286 (347)
                      ...+.+..+..+|..++..|+|++|+..|.++++                  ..|....++.++|.++..+|++++|+..
T Consensus         8 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~   69 (166)
T 1a17_A            8 GALKRAEELKTQANDYFKAKDYENAIKFYSQAIE------------------LNPSNAIYYGNRSLAYLRTECYGYALGD   69 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH------------------hCCCChHHHHHHHHHHHHcCCHHHHHHH
Confidence            3456788999999999999999999999999999                  7788889999999999999999999999


Q ss_pred             HHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 019054          287 TEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (347)
Q Consensus       287 ~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~  341 (347)
                      ++++++++|.++.+++.+|.++..+|++++|+..|+++++++|.+..+...+..+
T Consensus        70 ~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~  124 (166)
T 1a17_A           70 ATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC  124 (166)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999888666555

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.59  E-value=8.6e-15  Score=113.84  Aligned_cols=113  Identities=9%  Similarity=0.018  Sum_probs=102.1

Q ss_pred             HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHH---HHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKS---QIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+...|..++..|+|++|+..|+++++                  ..|...   .+++++|.++.++|++++|+..++++
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~------------------~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~   65 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLE------------------LYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDL   65 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHH------------------HCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            357788899999999999999999998                  444444   79999999999999999999999999


Q ss_pred             hhcCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054          291 MRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (347)
Q Consensus       291 l~~~p~~---~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  344 (347)
                      +..+|++   +.+++.+|.++..+|++++|+..|+++++..|+++.+...+..+...
T Consensus        66 ~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l  122 (129)
T 2xev_A           66 VSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI  122 (129)
T ss_dssp             HHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred             HHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence            9999999   88999999999999999999999999999999999888777666544

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.59  E-value=8.3e-15  Score=113.39  Aligned_cols=117  Identities=29%  Similarity=0.370  Sum_probs=108.7

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+..+..+|..++..|+|++|+..|.+++.                  ..|....++.++|.++..+|++++|+.+++++
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~   64 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKE------------------LDPTNMTYITNQAAVYFEKGDYNKCRELCEKA   64 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHh------------------cCCccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            567789999999999999999999999999                  67778899999999999999999999999999


Q ss_pred             hhcCCCC-------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          291 MRDGDDN-------VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       291 l~~~p~~-------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      +.+.|.+       ..+++.+|.++..+|++++|+..|++++++.| ++.+...+..+.+.++
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~  126 (131)
T 1elr_A           65 IEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK  126 (131)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred             HhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence            9998877       89999999999999999999999999999999 7888888888877654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.58  E-value=6.9e-15  Score=137.09  Aligned_cols=86  Identities=10%  Similarity=0.030  Sum_probs=46.0

Q ss_pred             HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 019054          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (347)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l  338 (347)
                      ++|....+|+++|.++..+|++++|+.+|++||+++|++..+|+++|.++..+|++++|+.+|+++++++|.+..++..+
T Consensus       161 l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~l  240 (382)
T 2h6f_A          161 EQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQR  240 (382)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            44555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHH
Q 019054          339 AVAKKK  344 (347)
Q Consensus       339 ~~~~~~  344 (347)
                      +.+...
T Consensus       241 g~~l~~  246 (382)
T 2h6f_A          241 YFVISN  246 (382)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            544433

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.58  E-value=9.9e-15  Score=112.30  Aligned_cols=101  Identities=14%  Similarity=0.052  Sum_probs=90.6

Q ss_pred             chhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhH---HhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhH
Q 019054          224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSL---RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA  300 (347)
Q Consensus       224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a  300 (347)
                      ..|+|++|+..|+++++                  .   +|....++.++|.+|..+|+|++|+..++++++++|+++.+
T Consensus         2 ~~g~~~~A~~~~~~al~------------------~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~   63 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIA------------------SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL   63 (117)
T ss_dssp             -----CCCHHHHHHHHS------------------SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CCCcHHHHHHHHHHHHH------------------cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH
Confidence            36899999999999999                  6   78999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054          301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (347)
Q Consensus       301 ~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  342 (347)
                      ++.+|.++..+|++++|+..|++++++.|+++.+......+.
T Consensus        64 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~  105 (117)
T 3k9i_A           64 RVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAIL  105 (117)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            999999999999999999999999999999998876655443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.57  E-value=1.9e-14  Score=123.34  Aligned_cols=119  Identities=17%  Similarity=0.143  Sum_probs=110.7

Q ss_pred             HHhhHHHHHHcCccccch-----------hhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHH
Q 019054          208 WMNAVDSIKVFGNEHYKK-----------QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK  276 (347)
Q Consensus       208 ~~~~a~~~~~~g~~~~~~-----------g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~  276 (347)
                      .++.+..+..+|..+...           |++++|+..|+++++                  .+|....++.++|.++..
T Consensus        69 ~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~------------------~~P~~~~~~~~lg~~~~~  130 (217)
T 2pl2_A           69 TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER------------------VNPRYAPLHLQRGLVYAL  130 (217)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH------------------hCcccHHHHHHHHHHHHH
Confidence            344567788999999999           999999999999999                  899999999999999999


Q ss_pred             cCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054          277 LGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV  345 (347)
Q Consensus       277 l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  345 (347)
                      +|++++|+..++++++++ +++.+++.+|.+|..+|++++|+..|+++++++|++..+...++.+...+
T Consensus       131 ~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~  198 (217)
T 2pl2_A          131 LGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLK  198 (217)
T ss_dssp             TTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-
T ss_pred             cCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence            999999999999999999 99999999999999999999999999999999999999999998876544

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.56  E-value=3.8e-14  Score=121.71  Aligned_cols=105  Identities=20%  Similarity=0.338  Sum_probs=99.2

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHh-hHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRK-TKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      +..+...|..++..|+|++|+..|+++++                  ..| ....+++++|.|+..+|++++|+.+++++
T Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~------------------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a   68 (228)
T 4i17_A            7 PNQLKNEGNDALNAKNYAVAFEKYSEYLK------------------LTNNQDSVTAYNCGVCADNIKKYKEAADYFDIA   68 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHh------------------ccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHH
Confidence            46789999999999999999999999999                  665 66688999999999999999999999999


Q ss_pred             hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q 019054          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI  334 (347)
Q Consensus       291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~  334 (347)
                      ++++|++..+++.+|.+|..+|++++|+..|+++++++|+++..
T Consensus        69 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  112 (228)
T 4i17_A           69 IKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATI  112 (228)
T ss_dssp             HHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHH
Confidence            99999999999999999999999999999999999999999954

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.55  E-value=7.6e-14  Score=106.82  Aligned_cols=117  Identities=32%  Similarity=0.485  Sum_probs=109.3

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+..+..+|..++..|++++|+..|+++++                  ..|....++.++|.++...|++++|+..++++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~   69 (125)
T 1na0_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALE------------------LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA   69 (125)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------HCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            356788899999999999999999999998                  66677789999999999999999999999999


Q ss_pred             hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV  345 (347)
Q Consensus       291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  345 (347)
                      +..+|.+..+++.+|.++..+|++++|+..|+++++++|.+..+...++.+....
T Consensus        70 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  124 (125)
T 1na0_A           70 LELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ  124 (125)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999998887654

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.55  E-value=5.1e-14  Score=116.64  Aligned_cols=136  Identities=17%  Similarity=0.229  Sum_probs=89.9

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhcc-----------ccCCCCh-----hhhhhHHhhHHHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW-----------EKEGIDE-----GKSSSLRKTKSQIFTNSSACK  274 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~-----------~~~~~~~-----~~~~~~~~~~~~~~~nla~~~  274 (347)
                      .+..+.++|+.++++|+|++|+..|+++++.-+...           .....+.     .......+....++.++|.++
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN   83 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence            466788999999999999999999999998322100           0000000     000112233334444444555


Q ss_pred             HHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       275 ~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      ...++++.|+..+.+++.++|.+..+++.+|.+|..+|++++|+..|+++++++|.+..++..++.+...++
T Consensus        84 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g  155 (184)
T 3vtx_A           84 FMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKG  155 (184)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCC
Confidence            555555555555555556677777788888888888888888888888888888888888888888776654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.55  E-value=9.3e-15  Score=136.18  Aligned_cols=124  Identities=10%  Similarity=0.064  Sum_probs=111.2

Q ss_pred             hHHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCC-hHHH
Q 019054          205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD-LKGA  283 (347)
Q Consensus       205 ~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~-~~~A  283 (347)
                      +....+.+..+..+|..+.+.|+|++|+..|+++|+                  ++|....+|+++|.++..+|+ +++|
T Consensus        90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~------------------l~P~~~~a~~~~g~~l~~~g~d~~eA  151 (382)
T 2h6f_A           90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIE------------------LNAANYTVWHFRRVLLKSLQKDLHEE  151 (382)
T ss_dssp             ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCCHHHH
T ss_pred             hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHH------------------hCccCHHHHHHHHHHHHHcccCHHHH
Confidence            334455677888899999999999999999999999                  889999999999999999997 9999


Q ss_pred             HHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          284 LLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       284 ~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      +.++++||+++|++..+|+++|.++..+|++++|+.+|+++++++|++..++..++.+...++
T Consensus       152 l~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g  214 (382)
T 2h6f_A          152 MNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFK  214 (382)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcC
Confidence            999999999999999999999999999999999999999999999999999999988877664

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.54  E-value=2.3e-14  Score=137.50  Aligned_cols=115  Identities=24%  Similarity=0.384  Sum_probs=109.3

Q ss_pred             hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (347)
Q Consensus       210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~  289 (347)
                      +.+..+..+|+.+++.|+|++|+..|++|++                  ..|....++.++|.+|.++|+|++|+.++++
T Consensus         4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~   65 (477)
T 1wao_1            4 KRAEELKTQANDYFKAKDYENAIKFYSQAIE------------------LNPSNAIYYGNRSLAYLRTECYGYALGDATR   65 (477)
T ss_dssp             HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH------------------hCCccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            3566788999999999999999999999999                  8888899999999999999999999999999


Q ss_pred             HhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054          290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (347)
Q Consensus       290 al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  342 (347)
                      |++++|+++.+++++|.+|..+|++++|++.|+++++++|++..++..++.+.
T Consensus        66 al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~  118 (477)
T 1wao_1           66 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN  118 (477)
T ss_dssp             HHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998888774

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.53  E-value=2.6e-14  Score=127.59  Aligned_cols=103  Identities=25%  Similarity=0.373  Sum_probs=99.1

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+..++.+|+.+++.|+|++|+..|+++++                  ..|....++.++|.+|.++|++++|+.++++|
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a   64 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAIT------------------RNPLVAVYYTNRALCYLKMQQPEQALADCRRA   64 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            467789999999999999999999999999                  88888999999999999999999999999999


Q ss_pred             hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 019054          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND  331 (347)
Q Consensus       291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  331 (347)
                      ++++|+++++++++|.+|..+|++++|+..|+++++++|++
T Consensus        65 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           65 LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             TTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            99999999999999999999999999999999999999976

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.51  E-value=2.5e-14  Score=115.60  Aligned_cols=89  Identities=12%  Similarity=0.029  Sum_probs=85.8

Q ss_pred             HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 019054          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (347)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l  338 (347)
                      ++|....+++++|.++.++|+|++|+..|++++.++|.++.+|+.+|.+|..+|+|++|+..|+++++++|+++.++..+
T Consensus        31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l  110 (151)
T 3gyz_A           31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT  110 (151)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcC
Q 019054          339 AVAKKKVSR  347 (347)
Q Consensus       339 ~~~~~~~~~  347 (347)
                      +.+...+++
T Consensus       111 g~~~~~lg~  119 (151)
T 3gyz_A          111 GQCQLRLKA  119 (151)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHHHHcCC
Confidence            999877653

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.50  E-value=1.8e-13  Score=113.23  Aligned_cols=125  Identities=17%  Similarity=0.116  Sum_probs=98.1

Q ss_pred             HhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhcc-----------ccCCCC-----hhhhhhHHhhHHHHHHHHHH
Q 019054          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW-----------EKEGID-----EGKSSSLRKTKSQIFTNSSA  272 (347)
Q Consensus       209 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~-----------~~~~~~-----~~~~~~~~~~~~~~~~nla~  272 (347)
                      ++.+..+..+|..+++.|++++|+..+.+++...+...           .....+     -.......|....++..+|.
T Consensus        36 p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~  115 (184)
T 3vtx_A           36 PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGL  115 (184)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            34456677777777777888888877777766443110           000000     01122367778899999999


Q ss_pred             HHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 019054          273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG  333 (347)
Q Consensus       273 ~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~  333 (347)
                      ++.++|++++|+..++++++++|.++.+++.+|.+|..+|++++|+..|++|++++|+++.
T Consensus       116 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~  176 (184)
T 3vtx_A          116 VYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAK  176 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred             HHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence            9999999999999999999999999999999999999999999999999999999997653

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.50  E-value=9.4e-14  Score=118.11  Aligned_cols=106  Identities=20%  Similarity=0.186  Sum_probs=94.0

Q ss_pred             cCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC
Q 019054          218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN  297 (347)
Q Consensus       218 ~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~  297 (347)
                      +|..+++.|+|++|+..|+++++                  .+|....++.++|.++..+|++++|+..|+++++++|++
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~  121 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQ------------------KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN  121 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence            99999999999999999999999                  899999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHh-----------------------------------cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054          298 VKALFRQGQAYMA-----------------------------------LNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (347)
Q Consensus       298 ~~a~~~~g~~~~~-----------------------------------~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  342 (347)
                      +.+++.+|.+|..                                   +|+|++|+.+|+++++++|+. .+...|..+.
T Consensus       122 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~l~~i~  200 (208)
T 3urz_A          122 LAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDKIL  200 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH-HHHHHHHHHH
Confidence            9888888777643                                   357899999999999999964 4555555543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.50  E-value=7.9e-14  Score=114.92  Aligned_cols=117  Identities=15%  Similarity=0.201  Sum_probs=106.5

Q ss_pred             HhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHH-HHHcCCh--HHHHH
Q 019054          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSAC-KLKLGDL--KGALL  285 (347)
Q Consensus       209 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~-~~~l~~~--~~A~~  285 (347)
                      ...+..+..+|..++..|+|++|+..|+++++                  ..|....++.++|.+ +...|++  ++|+.
T Consensus        41 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~la~~l~~~~~~~~~~~A~~  102 (177)
T 2e2e_A           41 PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQ------------------LRGENAELYAALATVLYYQASQHMTAQTRA  102 (177)
T ss_dssp             CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HHCSCHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------cCCCCHHHHHHHHHHHHHhcCCcchHHHHH
Confidence            44577899999999999999999999999999                  888889999999999 8899999  99999


Q ss_pred             HHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 019054          286 DTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK  343 (347)
Q Consensus       286 ~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  343 (347)
                      .++++++++|++..+++.+|.+|..+|++++|+..|+++++++|.+......+..+.+
T Consensus       103 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i~~  160 (177)
T 2e2e_A          103 MIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINM  160 (177)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHHHH
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998765555554443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.50  E-value=5.8e-14  Score=120.54  Aligned_cols=126  Identities=13%  Similarity=0.146  Sum_probs=108.2

Q ss_pred             HhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 019054          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (347)
Q Consensus       209 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~  288 (347)
                      ++.+..+..+|..++..|+|++|+..|+++++..+.           ..........++.++|.++..+|++++|+..++
T Consensus        73 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-----------~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~  141 (228)
T 4i17_A           73 YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPG-----------NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYK  141 (228)
T ss_dssp             CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----------CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-----------cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHH
Confidence            345677889999999999999999999999982210           001222233779999999999999999999999


Q ss_pred             HHhhcCCC--ChhHHHHHHHHHHhcCCH---------------------------HHHHHHHHHHHhhCCCCHHHHHHHH
Q 019054          289 FAMRDGDD--NVKALFRQGQAYMALNDV---------------------------DAAVESFEKALKLEPNDGGIKKELA  339 (347)
Q Consensus       289 ~al~~~p~--~~~a~~~~g~~~~~~~~~---------------------------~~A~~~~~~al~l~P~~~~~~~~l~  339 (347)
                      ++++++|+  ++.+++.+|.+|..+|+.                           ++|+..|+++++++|++..+...+.
T Consensus       142 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~  221 (228)
T 4i17_A          142 HATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQD  221 (228)
T ss_dssp             HHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence            99999999  999999999999999998                           9999999999999999999999999


Q ss_pred             HHHHHh
Q 019054          340 VAKKKV  345 (347)
Q Consensus       340 ~~~~~~  345 (347)
                      .++..+
T Consensus       222 ~i~~~~  227 (228)
T 4i17_A          222 QVKAMI  227 (228)
T ss_dssp             HHHTTC
T ss_pred             HHHHhh
Confidence            987654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.48  E-value=2.8e-13  Score=105.84  Aligned_cols=88  Identities=14%  Similarity=0.091  Sum_probs=84.8

Q ss_pred             HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 019054          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (347)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l  338 (347)
                      ++|..+..+.++|.+|++.|+|++|+..|++||+++|.++.+|+.+|.+|..+|++++|+.+|+++++++|++..++..+
T Consensus         8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l   87 (126)
T 4gco_A            8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK   87 (126)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhc
Q 019054          339 AVAKKKVS  346 (347)
Q Consensus       339 ~~~~~~~~  346 (347)
                      +.+...++
T Consensus        88 g~~~~~~~   95 (126)
T 4gco_A           88 AACLVAMR   95 (126)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHCC
Confidence            99887665

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.46  E-value=5.7e-14  Score=105.58  Aligned_cols=102  Identities=14%  Similarity=0.128  Sum_probs=95.2

Q ss_pred             HHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 019054          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (347)
Q Consensus       213 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  292 (347)
                      ..+..+|..++..|+|++|+..|+++++                  ..|....++.++|.++..+|++++|+..++++++
T Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~   68 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNYTESIDLFEKAIQ------------------LDPEESKYWLMKGKALYNLERYEEAVDCYNYVIN   68 (112)
T ss_dssp             TGGGGHHHHHHSSCCHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHH------------------hCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            3456788889999999999999999999                  7777788999999999999999999999999999


Q ss_pred             cCCC--ChhHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCCH
Q 019054          293 DGDD--NVKALFRQGQAYMAL-NDVDAAVESFEKALKLEPNDG  332 (347)
Q Consensus       293 ~~p~--~~~a~~~~g~~~~~~-~~~~~A~~~~~~al~l~P~~~  332 (347)
                      ++|.  +..+++.+|.++..+ |++++|++.++++++..|.+.
T Consensus        69 ~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           69 VIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             TSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             hCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            9999  999999999999999 999999999999999999763

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.45  E-value=4.1e-13  Score=113.64  Aligned_cols=116  Identities=19%  Similarity=0.147  Sum_probs=104.1

Q ss_pred             hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (347)
Q Consensus       210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~  289 (347)
                      ..+..++..|..++..|+|++|+..|++++.                  .   ...+++++|.+|..+|++++|+.++++
T Consensus         4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~------------------~---~~~~~~~lg~~~~~~g~~~~A~~~~~~   62 (213)
T 1hh8_A            4 VEAISLWNEGVLAADKKDWKGALDAFSAVQD------------------P---HSRICFNIGCMYTILKNMTEAEKAFTR   62 (213)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTSSS------------------C---CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHcC------------------C---ChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3566788999999999999999999999864                  1   356899999999999999999999999


Q ss_pred             HhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHHHhc
Q 019054          290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG----------------GIKKELAVAKKKVS  346 (347)
Q Consensus       290 al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~----------------~~~~~l~~~~~~~~  346 (347)
                      ++.++|.++.+++.+|.+|..+|++++|+..|++++++.|.+.                .++..++.+...++
T Consensus        63 al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  135 (213)
T 1hh8_A           63 SINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKE  135 (213)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTT
T ss_pred             HHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHcc
Confidence            9999999999999999999999999999999999999999877                78888877765543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.44  E-value=4.6e-13  Score=131.06  Aligned_cols=120  Identities=12%  Similarity=0.110  Sum_probs=112.0

Q ss_pred             HHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHH
Q 019054          208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDT  287 (347)
Q Consensus       208 ~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~  287 (347)
                      ..+.+..+..+|..++..|+|++|+..|+++++                  ..|....++.++|.+|..+|++++|+..+
T Consensus        19 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~   80 (568)
T 2vsy_A           19 RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA------------------LHPGHPEAVARLGRVRWTQQRHAEAAVLL   80 (568)
T ss_dssp             --CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT------------------TSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            334567889999999999999999999999999                  78888999999999999999999999999


Q ss_pred             HHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054          288 EFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV  345 (347)
Q Consensus       288 ~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  345 (347)
                      +++++++|++..+++.+|.+|..+|++++|++.|+++++++|++..++..++.+...+
T Consensus        81 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  138 (568)
T 2vsy_A           81 QQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRL  138 (568)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999998887665

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.43  E-value=6.8e-13  Score=114.86  Aligned_cols=114  Identities=20%  Similarity=0.323  Sum_probs=104.5

Q ss_pred             hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (347)
Q Consensus       210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~  289 (347)
                      ..+..+..+|..++..|+|++|+..|++++.                  ..|....++.++|.++..+|++++|+..+++
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  198 (258)
T 3uq3_A          137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIK------------------RAPEDARGYSNRAAALAKLMSFPEAIADCNK  198 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHh------------------cCcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            3566788899999999999999999999998                  7777788999999999999999999999999


Q ss_pred             HhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHH
Q 019054          290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE------PNDGGIKKELAVA  341 (347)
Q Consensus       290 al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~------P~~~~~~~~l~~~  341 (347)
                      +++++|+++.+++.+|.++..+|++++|+..|+++++++      |.+..+...+..+
T Consensus       199 al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          199 AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA  256 (258)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred             HHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence            999999999999999999999999999999999999999      9888888887765

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.42  E-value=2e-12  Score=99.82  Aligned_cols=115  Identities=30%  Similarity=0.400  Sum_probs=102.4

Q ss_pred             HHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 019054          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (347)
Q Consensus       213 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  292 (347)
                      ..+..+|..++..|++++|+..|+++++                  ..+....++.++|.++...|++++|+..+++++.
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~   63 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALE------------------LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE   63 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHH------------------cCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            3567788889999999999999999998                  6666778899999999999999999999999999


Q ss_pred             cCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054          293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV  345 (347)
Q Consensus       293 ~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  345 (347)
                      ..|.+..+++.+|.++...|++++|+..+++++++.|.+..+...++.+....
T Consensus        64 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~  116 (136)
T 2fo7_A           64 LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ  116 (136)
T ss_dssp             HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             HCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999988888877765443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.42  E-value=6.4e-13  Score=106.80  Aligned_cols=88  Identities=9%  Similarity=0.050  Sum_probs=84.4

Q ss_pred             HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 019054          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (347)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l  338 (347)
                      .+|....+++++|.++...|+|++|+..+++++.++|.++.+|+.+|.++..+|++++|+..|+++++++|+++.++..+
T Consensus        16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   95 (148)
T 2vgx_A           16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA   95 (148)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred             CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhc
Q 019054          339 AVAKKKVS  346 (347)
Q Consensus       339 ~~~~~~~~  346 (347)
                      +.+...++
T Consensus        96 g~~~~~~g  103 (148)
T 2vgx_A           96 AECLLQXG  103 (148)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHcC
Confidence            98876654

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.41  E-value=1.5e-12  Score=110.03  Aligned_cols=103  Identities=12%  Similarity=0.066  Sum_probs=97.0

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  291 (347)
                      +..+..+|..++..|+|++|+..|.++++                  ..|....+++++|.++..+|++++|+.++++++
T Consensus        37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~------------------~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al   98 (213)
T 1hh8_A           37 SRICFNIGCMYTILKNMTEAEKAFTRSIN------------------RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEAL   98 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCccchHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            45789999999999999999999999999                  778888999999999999999999999999999


Q ss_pred             hcCCCCh----------------hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 019054          292 RDGDDNV----------------KALFRQGQAYMALNDVDAAVESFEKALKLEPNDG  332 (347)
Q Consensus       292 ~~~p~~~----------------~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  332 (347)
                      ++.|.+.                .+++.+|.+|..+|++++|+..|+++++++|.+.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  155 (213)
T 1hh8_A           99 IQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR  155 (213)
T ss_dssp             HTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred             HhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence            9888776                9999999999999999999999999999999754

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.41  E-value=8e-13  Score=126.71  Aligned_cols=117  Identities=14%  Similarity=0.041  Sum_probs=109.3

Q ss_pred             HHHHHHcCccccch---------hhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHc-----
Q 019054          212 VDSIKVFGNEHYKK---------QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL-----  277 (347)
Q Consensus       212 a~~~~~~g~~~~~~---------g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l-----  277 (347)
                      +..+..+|..+...         |+|++|+..|+++++                  ..|....+|+++|.+|..+     
T Consensus       170 ~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~~~~~~  231 (474)
T 4abn_A          170 KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ------------------MDVLDGRSWYILGNAYLSLYFNTG  231 (474)
T ss_dssp             HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHHHHhhc
Confidence            35677888899998         999999999999999                  8889999999999999999     


Q ss_pred             ---CChHHHHHHHHHHhhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          278 ---GDLKGALLDTEFAMRDGD---DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       278 ---~~~~~A~~~~~~al~~~p---~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                         |++++|+..+++|++++|   .++.+|+++|.+|..+|++++|+..|+++++++|++..++..++.+...++
T Consensus       232 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg  306 (474)
T 4abn_A          232 QNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLS  306 (474)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence               999999999999999999   999999999999999999999999999999999999999988888776553

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.40  E-value=2.9e-12  Score=112.20  Aligned_cols=111  Identities=14%  Similarity=0.054  Sum_probs=103.2

Q ss_pred             hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (347)
Q Consensus       210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~  289 (347)
                      ..+..+..+|..++..|+|++|+..|+++++                  ..|....++.++|.++..+|++++|+..+++
T Consensus        41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  102 (275)
T 1xnf_A           41 ERAQLLYERGVLYDSLGLRALARNDFSQALA------------------IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDS  102 (275)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcccHHHHHHHHHHHHH------------------cCCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            3577889999999999999999999999999                  7788889999999999999999999999999


Q ss_pred             HhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 019054          290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (347)
Q Consensus       290 al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l  338 (347)
                      +++++|.+..+++.+|.+|..+|++++|+..|+++++++|.+......+
T Consensus       103 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  151 (275)
T 1xnf_A          103 VLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWL  151 (275)
T ss_dssp             HHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            9999999999999999999999999999999999999999998544433

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.39  E-value=4.5e-12  Score=103.66  Aligned_cols=117  Identities=21%  Similarity=0.215  Sum_probs=106.6

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  291 (347)
                      +..+..+|..++..|++++|+..|.++++                  ..|....++.++|.++...|++++|+..+++++
T Consensus        42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~  103 (186)
T 3as5_A           42 VDVALHLGIAYVKTGAVDRGTELLERSLA------------------DAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVA  103 (186)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            45678889999999999999999999998                  667778899999999999999999999999999


Q ss_pred             hcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       292 ~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      ..+|.+..+++.+|.++..+|++++|+..|+++++++|.+..+...++.+....+
T Consensus       104 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~  158 (186)
T 3as5_A          104 EANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMG  158 (186)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             hcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999999999998888887765543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.38  E-value=3.3e-12  Score=109.68  Aligned_cols=116  Identities=20%  Similarity=0.208  Sum_probs=76.6

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+..+..+|..++..|++++|+..|+++++                  ..+....++.++|.++..+|++++|+..++++
T Consensus        56 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  117 (243)
T 2q7f_A           56 DAIPYINFANLLSSVNELERALAFYDKALE------------------LDSSAATAYYGAGNVYVVKEMYKEAKDMFEKA  117 (243)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------cCCcchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            456677778888888888888888888877                  44555556666666666666666666666666


Q ss_pred             hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (347)
Q Consensus       291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  344 (347)
                      ++++|.+..+++.+|.++..+|++++|+..|+++++++|.+..+...++.+...
T Consensus       118 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  171 (243)
T 2q7f_A          118 LRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLAN  171 (243)
T ss_dssp             HHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence            666666666666666666666666666666666666666666655555554433

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.38  E-value=5.7e-13  Score=133.39  Aligned_cols=117  Identities=11%  Similarity=-0.013  Sum_probs=105.7

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+..+..+|..++..|+|++|+..|+++++                  .+|....+++++|.++..+|++++|+.+|++|
T Consensus       432 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a  493 (681)
T 2pzi_A          432 SVELPLMEVRALLDLGDVAKATRKLDDLAE------------------RVGWRWRLVWYRAVAELLTGDYDSATKHFTEV  493 (681)
T ss_dssp             CSHHHHHHHHHHHHHTCHHHHHHHHHHHHH------------------HHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHhcCCHHHHHHHHHHHhc------------------cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            346788889999999999999999999999                  88888999999999999999999999999999


Q ss_pred             hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      ++++|+++.+++++|.+|..+|++++ +..|+++++++|++..++..++.+...++
T Consensus       494 l~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g  548 (681)
T 2pzi_A          494 LDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEG  548 (681)
T ss_dssp             HHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999 99999999999999999988888876654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.38  E-value=5.8e-14  Score=105.95  Aligned_cols=95  Identities=20%  Similarity=0.272  Sum_probs=82.7

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+..+..+|..++..|+|++|+..|+++++                  ..|....++.++|.|+.++|++++|+.+++++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   64 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLIT------------------AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQG   64 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            466788889999999999999999999998                  77778888999999999999999999999999


Q ss_pred             hhcCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHH
Q 019054          291 MRDGDDN------VKALFRQGQAYMALNDVDAAVESFEK  323 (347)
Q Consensus       291 l~~~p~~------~~a~~~~g~~~~~~~~~~~A~~~~~~  323 (347)
                      ++++|++      ..+++++|.++..+|++++|+..+++
T Consensus        65 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           65 LRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence            9999988      88899999999998888888766554

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.38  E-value=1.6e-12  Score=113.92  Aligned_cols=109  Identities=14%  Similarity=0.142  Sum_probs=99.1

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhH---HHHHHHHHHHHHHcCChHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTK---SQIFTNSSACKLKLGDLKGALLDT  287 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~nla~~~~~l~~~~~A~~~~  287 (347)
                      .+..++..|..+++.|+|++|+..|+++++                  ..|..   ..+++++|.||.++|+|++|+..+
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~------------------~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~   75 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFT------------------YGRTHEWAADAQFYLARAYYQNKEYLLAASEY   75 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGG------------------GCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH------------------hCCCCcchHHHHHHHHHHHHHhCcHHHHHHHH
Confidence            467889999999999999999999999998                  54444   889999999999999999999999


Q ss_pred             HHHhhcCCCC---hhHHHHHHHHHHh--------cCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 019054          288 EFAMRDGDDN---VKALFRQGQAYMA--------LNDVDAAVESFEKALKLEPNDGGIKKE  337 (347)
Q Consensus       288 ~~al~~~p~~---~~a~~~~g~~~~~--------~~~~~~A~~~~~~al~l~P~~~~~~~~  337 (347)
                      ++++++.|++   ..+++.+|.++..        +|++++|+..|+++++++|++..+...
T Consensus        76 ~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a  136 (261)
T 3qky_A           76 ERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDA  136 (261)
T ss_dssp             HHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred             HHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHH
Confidence            9999998855   6799999999999        999999999999999999998776633

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.37  E-value=4.6e-12  Score=116.22  Aligned_cols=113  Identities=13%  Similarity=0.128  Sum_probs=98.7

Q ss_pred             HHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhh--HHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054          216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKT--KSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (347)
Q Consensus       216 ~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  293 (347)
                      ..+|..+...|++++|+..|+++++                  ..|.  ...++.++|.++..+|++++|+..+++++++
T Consensus       181 ~~l~~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  242 (365)
T 4eqf_A          181 RRMSKSPVDSSVLEGVKELYLEAAH------------------QNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV  242 (365)
T ss_dssp             --------CCHHHHHHHHHHHHHHH------------------HSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHH------------------hCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            3458899999999999999999999                  6666  7789999999999999999999999999999


Q ss_pred             CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       294 ~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      +|+++.+++.+|.+|..+|++++|+..|+++++++|++..++..++.+...++
T Consensus       243 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  295 (365)
T 4eqf_A          243 RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLG  295 (365)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCC
Confidence            99999999999999999999999999999999999999999999988876654

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.37  E-value=3.1e-12  Score=97.65  Aligned_cols=98  Identities=15%  Similarity=0.104  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHH
Q 019054          230 MALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYM  309 (347)
Q Consensus       230 ~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  309 (347)
                      .|+..|+++++                  ..|....+++++|.++..+|++++|+..++++++++|++..+++.+|.+|.
T Consensus         3 ~a~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   64 (115)
T 2kat_A            3 AITERLEAMLA------------------QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQ   64 (115)
T ss_dssp             CHHHHHHHHHT------------------TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH------------------hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence            57889999998                  788888999999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHh
Q 019054          310 ALNDVDAAVESFEKALKLEPN--DGGIKKELAVAKKKV  345 (347)
Q Consensus       310 ~~~~~~~A~~~~~~al~l~P~--~~~~~~~l~~~~~~~  345 (347)
                      .+|++++|+..|+++++++|.  +......+....+.+
T Consensus        65 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l  102 (115)
T 2kat_A           65 GQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRL  102 (115)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHh
Confidence            999999999999999999984  555566665555444

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.36  E-value=3.3e-12  Score=116.86  Aligned_cols=118  Identities=18%  Similarity=0.188  Sum_probs=106.3

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+..+..+|..++..|++++|+..|+++++                  ..|....++.++|.++..+|++++|+..++++
T Consensus       216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  277 (368)
T 1fch_A          216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALS------------------VRPNDYLLWNKLGATLANGNQSEEAVAAYRRA  277 (368)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            356678889999999999999999999998                  77777889999999999999999999999999


Q ss_pred             hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-----------HHHHHHHHHHHHHhc
Q 019054          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND-----------GGIKKELAVAKKKVS  346 (347)
Q Consensus       291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-----------~~~~~~l~~~~~~~~  346 (347)
                      ++++|++..+++.+|.+|..+|++++|+..|+++++++|.+           ..++..++.+...++
T Consensus       278 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  344 (368)
T 1fch_A          278 LELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLG  344 (368)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHT
T ss_pred             HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999988           788888888876654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.36  E-value=4.1e-13  Score=134.43  Aligned_cols=113  Identities=14%  Similarity=0.016  Sum_probs=107.5

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+..+..+|..++..|+|++|+..|+++++                  ++|....+++++|.++.++|++++ +.+|++|
T Consensus       466 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~------------------l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~a  526 (681)
T 2pzi_A          466 RWRLVWYRAVAELLTGDYDSATKHFTEVLD------------------TFPGELAPKLALAATAELAGNTDE-HKFYQTV  526 (681)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH------------------HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCChHHHHHHHHHHHHcCChHH-HHHHHHH
Confidence            356688899999999999999999999999                  899999999999999999999999 9999999


Q ss_pred             hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (347)
Q Consensus       291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  342 (347)
                      ++++|++..+++++|.+|..+|++++|+++|+++++++|++..++..++.+.
T Consensus       527 l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~  578 (681)
T 2pzi_A          527 WSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTL  578 (681)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHT
T ss_pred             HHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999988887764

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.36  E-value=4.9e-12  Score=114.68  Aligned_cols=119  Identities=20%  Similarity=0.209  Sum_probs=104.9

Q ss_pred             HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (347)
Q Consensus       214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  293 (347)
                      .....|..+++.|++++|+..|++++...+.              .......++.++|.++.++|++++|+..+++++++
T Consensus       236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  301 (359)
T 3ieg_A          236 KLIESAEELIRDGRYTDATSKYESVMKTEPS--------------VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM  301 (359)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS--------------SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--------------chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            3456688999999999999999999983211              12233466889999999999999999999999999


Q ss_pred             CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       294 ~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      +|+++.+++.+|.++..+|++++|+..|+++++++|++..++..+..++..++
T Consensus       302 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~  354 (359)
T 3ieg_A          302 EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK  354 (359)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999887764

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.36  E-value=1.7e-12  Score=106.78  Aligned_cols=113  Identities=16%  Similarity=0.115  Sum_probs=99.5

Q ss_pred             HHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC
Q 019054          216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD  295 (347)
Q Consensus       216 ~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p  295 (347)
                      ...+..++..|+|++|+..|++++.                  ..|....++.++|.+|..+|++++|+..++++++++|
T Consensus        14 ~~~~~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p   75 (177)
T 2e2e_A           14 RDPLHQFASQQNPEAQLQALQDKIR------------------ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG   75 (177)
T ss_dssp             STTTCCCC-----CCCCHHHHHHHH------------------HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC
T ss_pred             hhhhhhhhhccCHHHHHHHHHHHHH------------------hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence            3456678899999999999999999                  7888889999999999999999999999999999999


Q ss_pred             CChhHHHHHHHH-HHhcCCH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          296 DNVKALFRQGQA-YMALNDV--DAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       296 ~~~~a~~~~g~~-~~~~~~~--~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      +++.+++.+|.+ +...|++  ++|+..|+++++++|.+..++..++.+....+
T Consensus        76 ~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  129 (177)
T 2e2e_A           76 ENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQA  129 (177)
T ss_dssp             SCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcc
Confidence            999999999999 8899999  99999999999999999999999988766543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.36  E-value=2.3e-12  Score=118.27  Aligned_cols=118  Identities=18%  Similarity=0.197  Sum_probs=108.2

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+..+..+|..+...|+|++|+..|+++++                  ..|....++.++|.++.++|++++|+..++++
T Consensus       212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  273 (365)
T 4eqf_A          212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALT------------------VRPEDYSLWNRLGATLANGDRSEEAVEAYTRA  273 (365)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            456788899999999999999999999999                  77888899999999999999999999999999


Q ss_pred             hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------------HHHHHHHHHHHHHhc
Q 019054          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND------------GGIKKELAVAKKKVS  346 (347)
Q Consensus       291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~------------~~~~~~l~~~~~~~~  346 (347)
                      ++++|+++.+++.+|.+|..+|++++|+..|+++++++|.+            ..++..++.+...++
T Consensus       274 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  341 (365)
T 4eqf_A          274 LEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMD  341 (365)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHT
T ss_pred             HhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999873            567777777766554

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.36  E-value=3.1e-12  Score=118.44  Aligned_cols=116  Identities=17%  Similarity=0.161  Sum_probs=90.7

Q ss_pred             HHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 019054          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (347)
Q Consensus       213 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  292 (347)
                      ..+..+|..+.+.|++++|+..|+++++                  ..|....++.++|.++.++|++++|+..++++++
T Consensus       272 ~~~~~l~~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  333 (388)
T 1w3b_A          272 DAYCNLANALKEKGSVAEAEDCYNTALR------------------LCPTHADSLNNLANIKREQGNIEEAVRLYRKALE  333 (388)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            3445555555555666666666666655                  5666777888888888888888888888888888


Q ss_pred             cCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       293 ~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      ++|++..+++.+|.+|..+|++++|+..|+++++++|++..++..++.+...++
T Consensus       334 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~  387 (388)
T 1w3b_A          334 VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred             cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence            888888888888888888888888888888888888888888888888777654

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.35  E-value=1.2e-12  Score=125.56  Aligned_cols=123  Identities=18%  Similarity=0.202  Sum_probs=112.3

Q ss_pred             hHHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHc-------
Q 019054          205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL-------  277 (347)
Q Consensus       205 ~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l-------  277 (347)
                      +....+.+..+..+|..++..|+|++|+..|+++++                  ..|. ..++.++|.++..+       
T Consensus       130 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~------------------~~p~-~~~~~~lg~~~~~~~~~~~~~  190 (474)
T 4abn_A          130 VKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT------------------HCKN-KVSLQNLSMVLRQLQTDSGDE  190 (474)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT------------------TCCC-HHHHHHHHHHHTTCCCSCHHH
T ss_pred             HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------hCCC-HHHHHHHHHHHHHhccCChhh
Confidence            333444577889999999999999999999999999                  6666 58999999999999       


Q ss_pred             --CChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhc--------CCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHH
Q 019054          278 --GDLKGALLDTEFAMRDGDDNVKALFRQGQAYMAL--------NDVDAAVESFEKALKLEP---NDGGIKKELAVAKKK  344 (347)
Q Consensus       278 --~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~--------~~~~~A~~~~~~al~l~P---~~~~~~~~l~~~~~~  344 (347)
                        |++++|+..+++|++++|+++.+|+.+|.+|..+        |++++|+..|+++++++|   .+..++..++.+...
T Consensus       191 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~  270 (474)
T 4abn_A          191 HSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKY  270 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHH
Confidence              9999999999999999999999999999999999        999999999999999999   999999999988776


Q ss_pred             hc
Q 019054          345 VS  346 (347)
Q Consensus       345 ~~  346 (347)
                      ++
T Consensus       271 ~g  272 (474)
T 4abn_A          271 EE  272 (474)
T ss_dssp             TT
T ss_pred             cC
Confidence            54

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.35  E-value=4.3e-12  Score=103.78  Aligned_cols=118  Identities=19%  Similarity=0.175  Sum_probs=108.7

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+..+..+|..++..|++++|+..|+++++                  ..|....++..+|.++...|++++|+..++++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~   68 (186)
T 3as5_A            7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYD------------------ADAFDVDVALHLGIAYVKTGAVDRGTELLERS   68 (186)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHTTTCC------------------TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcCHHHHHHHHHHHHH------------------hCccChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            466788899999999999999999999998                  66667889999999999999999999999999


Q ss_pred             hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      ++.+|.+..+++.+|.++...|++++|+..|+++++++|.+..+...++.+....+
T Consensus        69 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  124 (186)
T 3as5_A           69 LADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLG  124 (186)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999888887765543

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.35  E-value=4.5e-12  Score=113.25  Aligned_cols=118  Identities=10%  Similarity=0.064  Sum_probs=103.9

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHH---
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDT---  287 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~---  287 (347)
                      .+..+...|..+...|++++|+..|+++++                  .+|.+..++.++|.++..+|++++|+..+   
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~------------------~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~  177 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXDAWQ------------------LSNQNGEIGLLLAETLIALNRSEDAEAVLXTI  177 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTS
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHH------------------hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            456678899999999999999999999999                  88888899999999999999888876554   


Q ss_pred             -------------------------------HHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--HHH
Q 019054          288 -------------------------------EFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND--GGI  334 (347)
Q Consensus       288 -------------------------------~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~--~~~  334 (347)
                                                     +++++++|++..+++.+|.+|...|++++|+..|+++++++|++  ..+
T Consensus       178 ~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a  257 (287)
T 3qou_A          178 PLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT  257 (287)
T ss_dssp             CGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred             chhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence                                           44567789999999999999999999999999999999999998  888


Q ss_pred             HHHHHHHHHHhc
Q 019054          335 KKELAVAKKKVS  346 (347)
Q Consensus       335 ~~~l~~~~~~~~  346 (347)
                      +..+..+...++
T Consensus       258 ~~~l~~~~~~~g  269 (287)
T 3qou_A          258 RXTFQEILAALG  269 (287)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcC
Confidence            999988877765

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.34  E-value=7e-12  Score=107.63  Aligned_cols=113  Identities=22%  Similarity=0.206  Sum_probs=64.2

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  291 (347)
                      +..+..+|..+...|++++|+..|+++++                  ..+....++.++|.++..+|++++|+..+++++
T Consensus        91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~  152 (243)
T 2q7f_A           91 ATAYYGAGNVYVVKEMYKEAKDMFEKALR------------------AGMENGDLFYMLGTVLVKLEQPKLALPYLQRAV  152 (243)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            45556667777777777777777777776                  333444455555555555555555555555555


Q ss_pred             hcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (347)
Q Consensus       292 ~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  342 (347)
                      ++.|.+..+++.+|.++...|++++|+..|+++++++|.+..+...++.+.
T Consensus       153 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  203 (243)
T 2q7f_A          153 ELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTY  203 (243)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            555555555555555555555555555555555555555555554444443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.34  E-value=5e-12  Score=100.47  Aligned_cols=88  Identities=10%  Similarity=0.054  Sum_probs=83.9

Q ss_pred             HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 019054          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (347)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l  338 (347)
                      .+|.....++++|.++++.|+|++|+..+++++.++|+++.+|+.+|.+|..+|++++|+..|+++++++|+++.++..+
T Consensus        13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   92 (142)
T 2xcb_A           13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA   92 (142)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence            77888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhc
Q 019054          339 AVAKKKVS  346 (347)
Q Consensus       339 ~~~~~~~~  346 (347)
                      +.+...++
T Consensus        93 g~~~~~~g  100 (142)
T 2xcb_A           93 AECHLQLG  100 (142)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHcC
Confidence            88876654

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.34  E-value=1.8e-11  Score=107.07  Aligned_cols=117  Identities=17%  Similarity=0.094  Sum_probs=104.5

Q ss_pred             HHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC
Q 019054          216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD  295 (347)
Q Consensus       216 ~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p  295 (347)
                      ..++..+...++|++|+..|+++++...              ...+....++.++|.++..+|++++|+..++++++++|
T Consensus         9 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~--------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~   74 (275)
T 1xnf_A            9 EVLAVPLQPTLQQEVILARMEQILASRA--------------LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP   74 (275)
T ss_dssp             GGSCCCCCCCHHHHHHHHHHHHHHTSSC--------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             cceeeccCccchHHHHHHHHHHHHhccc--------------ccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC
Confidence            3466677888999999999999998210              12577889999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       296 ~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      .++.+++.+|.+|..+|++++|+..|+++++++|.+..++..++.+...++
T Consensus        75 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g  125 (275)
T 1xnf_A           75 DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGG  125 (275)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTT
T ss_pred             CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999988876554

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.33  E-value=8.4e-12  Score=109.27  Aligned_cols=116  Identities=22%  Similarity=0.229  Sum_probs=102.0

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  291 (347)
                      +..+..+|..+...|++++|+..|+++++                  ..|....++.++|.+|..+|++++|+..+++++
T Consensus        74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al  135 (272)
T 3u4t_A           74 SADFEYYGKILMKKGQDSLAIQQYQAAVD------------------RDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQI  135 (272)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGC
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHh------------------cCcccHHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            45678899999999999999999999999                  778888899999999999999999999999999


Q ss_pred             hcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV  345 (347)
Q Consensus       292 ~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  345 (347)
                      +++|.++.+++.+|...+..+++++|+..|+++++++|.+..+...++.+...+
T Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~  189 (272)
T 3u4t_A          136 RPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQ  189 (272)
T ss_dssp             CSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence            999999999999994444456999999999999999999988888887776554

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.33  E-value=1.9e-11  Score=105.64  Aligned_cols=135  Identities=16%  Similarity=0.119  Sum_probs=111.2

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhcccc---CCCC-----hhhhhhHHhhHHHHHHHHHHHHHHcCChHHH
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEK---EGID-----EGKSSSLRKTKSQIFTNSSACKLKLGDLKGA  283 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~---~~~~-----~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A  283 (347)
                      +..+..+|..+...|++++|+..|++++++.+.....   ....     -+......|....++.++|.++..+|++++|
T Consensus        79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A  158 (258)
T 3uq3_A           79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA  158 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence            6788899999999999999999999999843210000   0000     0001114567788999999999999999999


Q ss_pred             HHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          284 LLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       284 ~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      +..+++++.++|.++.+++.+|.++..+|++++|+..|+++++++|.+..+...++.+...++
T Consensus       159 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g  221 (258)
T 3uq3_A          159 VKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK  221 (258)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999988876654

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.32  E-value=9.3e-12  Score=115.22  Aligned_cols=135  Identities=17%  Similarity=0.130  Sum_probs=90.2

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhcc-----------ccCCCCh-----hhhhhHHhhHHHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW-----------EKEGIDE-----GKSSSLRKTKSQIFTNSSACK  274 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~-----------~~~~~~~-----~~~~~~~~~~~~~~~nla~~~  274 (347)
                      .+..+..+|..+...|++++|+..|+++++.-+...           .....+.     .......|....++.++|.++
T Consensus       168 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  247 (388)
T 1w3b_A          168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY  247 (388)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHH
Confidence            355667777788888888888888888877322100           0001111     011124556667777777777


Q ss_pred             HHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054          275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV  345 (347)
Q Consensus       275 ~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  345 (347)
                      .++|++++|+..++++++++|+++.+++.+|.++..+|++++|+..|+++++++|.+..+...++.+....
T Consensus       248 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  318 (388)
T 1w3b_A          248 YEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ  318 (388)
T ss_dssp             HHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Confidence            77777777777777777777777777777777777777777777777777777777777777777665544

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.32  E-value=1.4e-11  Score=106.67  Aligned_cols=131  Identities=15%  Similarity=0.086  Sum_probs=63.4

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhc-----------cccCCCCh-----hhhhh--HHhhHHHHHHHHHHH
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC-----------WEKEGIDE-----GKSSS--LRKTKSQIFTNSSAC  273 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~-----------~~~~~~~~-----~~~~~--~~~~~~~~~~nla~~  273 (347)
                      +..+..+|..++..|++++|+..|+++++..+..           ......+.     +....  ..+....++.++|.+
T Consensus        71 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~  150 (252)
T 2ho1_A           71 ADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLV  150 (252)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHH
Confidence            4556667777777777777777777777621100           00000000     00000  223344444555555


Q ss_pred             HHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054          274 KLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (347)
Q Consensus       274 ~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  342 (347)
                      +..+|++++|+..++++++.+|.+..+++.+|.++..+|++++|+..|++++++.|.+..+...+..+.
T Consensus       151 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  219 (252)
T 2ho1_A          151 SLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLA  219 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence            555555555555555555555555555555555555555555555555555555555544444444443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.32  E-value=6.9e-12  Score=107.70  Aligned_cols=110  Identities=15%  Similarity=0.146  Sum_probs=95.9

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  291 (347)
                      +..+..+|..+++.|+|++|+..|+++++..+               ..+....+++++|.+|.++|+|++|+..+++++
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p---------------~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l   68 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYP---------------FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFI   68 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---------------TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            56788899999999999999999999998211               123345789999999999999999999999999


Q ss_pred             hcCCCChh---HHHHHHHHHHh------------------cCCHHHHHHHHHHHHhhCCCCHHHHH
Q 019054          292 RDGDDNVK---ALFRQGQAYMA------------------LNDVDAAVESFEKALKLEPNDGGIKK  336 (347)
Q Consensus       292 ~~~p~~~~---a~~~~g~~~~~------------------~~~~~~A~~~~~~al~l~P~~~~~~~  336 (347)
                      +.+|++..   +++.+|.++..                  +|++++|+..|+++++..|+++.+..
T Consensus        69 ~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~  134 (225)
T 2yhc_A           69 RLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTD  134 (225)
T ss_dssp             HHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHH
T ss_pred             HHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence            99999875   89999999986                  57999999999999999999886554

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.32  E-value=7.9e-12  Score=103.04  Aligned_cols=114  Identities=15%  Similarity=0.139  Sum_probs=83.5

Q ss_pred             HHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHH----------
Q 019054          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGAL----------  284 (347)
Q Consensus       215 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~----------  284 (347)
                      +...|..++..|++++|+..|+++++                  .+|.+..++.++|.++..+|++++|+          
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~------------------~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~   70 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSD------------------ELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY   70 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCH------------------HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH------------------HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc
Confidence            34455555666666666666666666                  55666666666666666666655554          


Q ss_pred             ------------------------HHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--HHHHHHH
Q 019054          285 ------------------------LDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND--GGIKKEL  338 (347)
Q Consensus       285 ------------------------~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~--~~~~~~l  338 (347)
                                              ..++++++++|+++.+++.+|.++..+|++++|+..|+++++++|..  ..++..+
T Consensus        71 p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l  150 (176)
T 2r5s_A           71 QDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTF  150 (176)
T ss_dssp             CCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHH
T ss_pred             CChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHH
Confidence                                    44555566788889999999999999999999999999999999975  5688888


Q ss_pred             HHHHHHhc
Q 019054          339 AVAKKKVS  346 (347)
Q Consensus       339 ~~~~~~~~  346 (347)
                      ..+...++
T Consensus       151 ~~~~~~~g  158 (176)
T 2r5s_A          151 MDILSALG  158 (176)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhC
Confidence            88776654

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.32  E-value=4.9e-12  Score=98.77  Aligned_cols=75  Identities=13%  Similarity=0.120  Sum_probs=69.9

Q ss_pred             HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 019054          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG  333 (347)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~  333 (347)
                      ..+..+.++.++|.++++.|+|++|+.+|++||+++|+++.+|+++|.+|..+|+|++|+.+|+++++++|.+..
T Consensus         3 ~~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~   77 (127)
T 4gcn_A            3 AMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA   77 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccch
Confidence            345667889999999999999999999999999999999999999999999999999999999999999987653

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.32  E-value=4.6e-12  Score=110.94  Aligned_cols=76  Identities=17%  Similarity=0.162  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 019054          264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELA  339 (347)
Q Consensus       264 ~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~  339 (347)
                      ..++.++|.++..+|++++|+.+++++++++|.++.++..+|.+|..+|++++|+..|+++++++|.+..++..++
T Consensus        74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~  149 (272)
T 3u4t_A           74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELG  149 (272)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHH
Confidence            3345555555555555555555555555555555555555555555555555555555555555555555555554

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.31  E-value=1.5e-11  Score=104.07  Aligned_cols=116  Identities=16%  Similarity=0.028  Sum_probs=83.7

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHc-CChHHHHHHHHHH
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL-GDLKGALLDTEFA  290 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l-~~~~~A~~~~~~a  290 (347)
                      +..+..+|..+...|++++|+..|.++++                  ..|....++.++|.++..+ |++++|+..++++
T Consensus        42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~  103 (225)
T 2vq2_A           42 ELAWLVRAEIYQYLKVNDKAQESFRQALS------------------IKPDSAEINNNYGWFLCGRLNRPAESMAYFDKA  103 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHH------------------hCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            44455566666666666666666666666                  5566667777788888888 8888888888888


Q ss_pred             hh--cCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054          291 MR--DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV  345 (347)
Q Consensus       291 l~--~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  345 (347)
                      ++  .+|.+..+++.+|.++..+|++++|+..|+++++++|.+..+...++.+....
T Consensus       104 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~  160 (225)
T 2vq2_A          104 LADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLA  160 (225)
T ss_dssp             HTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHc
Confidence            77  55666777788888888888888888888888888887777777777665544

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.31  E-value=1.9e-11  Score=103.30  Aligned_cols=118  Identities=14%  Similarity=-0.034  Sum_probs=87.8

Q ss_pred             hHHHHHHcCccccch-hhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKK-QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~-g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~  289 (347)
                      .+..+..+|..++.. |++++|+..|+++++ .+               ..+....++.++|.++..+|++++|+..+++
T Consensus        75 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~---------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  138 (225)
T 2vq2_A           75 SAEINNNYGWFLCGRLNRPAESMAYFDKALA-DP---------------TYPTPYIANLNKGICSAKQGQFGLAEAYLKR  138 (225)
T ss_dssp             CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-ST---------------TCSCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-Cc---------------CCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            345566777777777 888888888887775 10               3345567777888888888888888888888


Q ss_pred             HhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHH
Q 019054          290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP-NDGGIKKELAVAKKK  344 (347)
Q Consensus       290 al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P-~~~~~~~~l~~~~~~  344 (347)
                      +++.+|.+..+++.+|.++..+|++++|+..|+++++++| .+......+..+...
T Consensus       139 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (225)
T 2vq2_A          139 SLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKA  194 (225)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred             HHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Confidence            8888888888888888888888888888888888888888 777777666655444

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.31  E-value=9.7e-12  Score=112.68  Aligned_cols=111  Identities=20%  Similarity=0.256  Sum_probs=105.0

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+..+..+|..++..|+|++|+..|+++++                  ..|....++.++|.++..+|++++|+..++++
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~------------------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~   63 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVD------------------GDPDNYIAYYRRATVFLAMGKSKAALPDLTKV   63 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------hCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            457789999999999999999999999999                  78888899999999999999999999999999


Q ss_pred             hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC---CCHHHHHHHH
Q 019054          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP---NDGGIKKELA  339 (347)
Q Consensus       291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P---~~~~~~~~l~  339 (347)
                      ++++|++..+++.+|.++..+|++++|+..|+++++++|   .+..+...+.
T Consensus        64 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~  115 (359)
T 3ieg_A           64 IALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLV  115 (359)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHH
T ss_pred             HHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHH
Confidence            999999999999999999999999999999999999999   8888877764

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.31  E-value=5.6e-12  Score=113.15  Aligned_cols=123  Identities=17%  Similarity=0.097  Sum_probs=105.8

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+..+..+|..++..|++++|+..|+++++..+.....         ...+....++.++|.++..+|++++|+..++++
T Consensus       192 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  262 (330)
T 3hym_B          192 DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNE---------VTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQA  262 (330)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCS---------CTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccc---------ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            35667888888889999999999999998843221100         011455679999999999999999999999999


Q ss_pred             hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (347)
Q Consensus       291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  342 (347)
                      ++++|++..+++.+|.++..+|++++|+..|+++++++|++..+...++.+.
T Consensus       263 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  314 (330)
T 3hym_B          263 LVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI  314 (330)
T ss_dssp             HHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred             HhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998876

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.30  E-value=1.2e-11  Score=108.26  Aligned_cols=117  Identities=14%  Similarity=0.181  Sum_probs=101.7

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHH--------cCChHHH
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK--------LGDLKGA  283 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~--------l~~~~~A  283 (347)
                      +..+..+|..+++.|+|++|+..|+++++..+               ..+....+++++|.|+..        +|++++|
T Consensus        52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p---------------~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A  116 (261)
T 3qky_A           52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQ---------------IDPRVPQAEYERAMCYYKLSPPYELDQTDTRKA  116 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------TCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCC---------------CCchhHHHHHHHHHHHHHhcccccccchhHHHH
Confidence            67789999999999999999999999999321               123567889999999999        9999999


Q ss_pred             HHHHHHHhhcCCCChhHH-----------------HHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHH
Q 019054          284 LLDTEFAMRDGDDNVKAL-----------------FRQGQAYMALNDVDAAVESFEKALKLEPND---GGIKKELAVAKK  343 (347)
Q Consensus       284 ~~~~~~al~~~p~~~~a~-----------------~~~g~~~~~~~~~~~A~~~~~~al~l~P~~---~~~~~~l~~~~~  343 (347)
                      +..++++++.+|++..+.                 +.+|.+|..+|+|++|+..|+++++..|++   +.+...++.+..
T Consensus       117 ~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~  196 (261)
T 3qky_A          117 IEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYI  196 (261)
T ss_dssp             HHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH
Confidence            999999999999986665                 899999999999999999999999999984   456666666554

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.30  E-value=2.8e-11  Score=93.67  Aligned_cols=85  Identities=15%  Similarity=0.106  Sum_probs=80.1

Q ss_pred             hHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 019054          262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (347)
Q Consensus       262 ~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~  341 (347)
                      ..+..+.++|.++++.|+|++|+..++++++++|+++.+++.+|.+|..+|++++|+.+|+++++++|++..++..++.+
T Consensus         2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~   81 (126)
T 3upv_A            2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA   81 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHhc
Q 019054          342 KKKVS  346 (347)
Q Consensus       342 ~~~~~  346 (347)
                      ...++
T Consensus        82 ~~~~~   86 (126)
T 3upv_A           82 QIAVK   86 (126)
T ss_dssp             HHHTT
T ss_pred             HHHHh
Confidence            76654

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.30  E-value=1.3e-11  Score=110.56  Aligned_cols=118  Identities=14%  Similarity=0.175  Sum_probs=107.5

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+..+..+|..++..|++++|+..|+++++                  ..|....++.++|.++..+|++++|+..++++
T Consensus       171 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  232 (327)
T 3cv0_A          171 DAQLHASLGVLYNLSNNYDSAAANLRRAVE------------------LRPDDAQLWNKLGATLANGNRPQEALDAYNRA  232 (327)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhccHHHHHHHHHHHHH------------------hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            356778889999999999999999999998                  77777889999999999999999999999999


Q ss_pred             hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHHhc
Q 019054          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN------------DGGIKKELAVAKKKVS  346 (347)
Q Consensus       291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~------------~~~~~~~l~~~~~~~~  346 (347)
                      ++++|++..+++.+|.++..+|++++|+..|++++++.|.            +..++..++.+...++
T Consensus       233 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  300 (327)
T 3cv0_A          233 LDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMN  300 (327)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTT
T ss_pred             HHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999            6888888888776654

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.30  E-value=3.9e-11  Score=86.76  Aligned_cols=85  Identities=31%  Similarity=0.435  Sum_probs=80.2

Q ss_pred             hhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 019054          261 KTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAV  340 (347)
Q Consensus       261 ~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~  340 (347)
                      +....++.++|.++..++++++|+.+++++++++|++..+++.+|.++..+|++++|+..|+++++++|.+..+...++.
T Consensus         6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~   85 (91)
T 1na3_A            6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN   85 (91)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHh
Q 019054          341 AKKKV  345 (347)
Q Consensus       341 ~~~~~  345 (347)
                      +...+
T Consensus        86 ~~~~~   90 (91)
T 1na3_A           86 AKQKQ   90 (91)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            87654

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.29  E-value=2e-11  Score=109.23  Aligned_cols=122  Identities=9%  Similarity=-0.083  Sum_probs=100.5

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHc-CChHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL-GDLKGALLDTEF  289 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l-~~~~~A~~~~~~  289 (347)
                      .+..+.++|..+.+.|+|++|+.+|++|+.+....            ........++.++|.+|..+ |++++|+.+|++
T Consensus        76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~------------g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~  143 (292)
T 1qqe_A           76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR------------GQFRRGANFKFELGEILENDLHDYAKAIDCYEL  143 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc------------CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence            46788999999999999999999999999954321            01123467899999999995 999999999999


Q ss_pred             HhhcCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH-------HHHHHHHHHHH
Q 019054          290 AMRDGDDN------VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG-------IKKELAVAKKK  344 (347)
Q Consensus       290 al~~~p~~------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~-------~~~~l~~~~~~  344 (347)
                      |+++.|..      ..++.++|.+|..+|+|++|+..|++++++.|.+..       +...++.+...
T Consensus       144 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~  211 (292)
T 1qqe_A          144 AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLA  211 (292)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHH
Confidence            99998754      578999999999999999999999999999998654       34555555443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.28  E-value=2e-11  Score=114.87  Aligned_cols=116  Identities=21%  Similarity=0.212  Sum_probs=102.4

Q ss_pred             HHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC
Q 019054          216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD  295 (347)
Q Consensus       216 ~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p  295 (347)
                      ...|..+++.|++++|+..|+++++..+.              .......++.++|.++.++|++++|+..++++++++|
T Consensus       261 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~--------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p  326 (450)
T 2y4t_A          261 IESAEELIRDGRYTDATSKYESVMKTEPS--------------IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP  326 (450)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCCS--------------SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCc--------------chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence            44599999999999999999999982210              1112256899999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054          296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV  345 (347)
Q Consensus       296 ~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  345 (347)
                      +++.+|+.+|.++..+|++++|+..|+++++++|+++.+...+..++..+
T Consensus       327 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  376 (450)
T 2y4t_A          327 DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLL  376 (450)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999998776554

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.28  E-value=2.2e-11  Score=93.83  Aligned_cols=102  Identities=30%  Similarity=0.462  Sum_probs=94.9

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  291 (347)
                      ...+..+|..++..|++++|+..|++++.                  ..+....++.++|.++..+|++++|+..+++++
T Consensus        35 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~   96 (136)
T 2fo7_A           35 AEAWYNLGNAYYKQGDYDEAIEYYQKALE------------------LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL   96 (136)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhcCHHHHHHHHHHHHH------------------HCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            45677789999999999999999999998                  666677889999999999999999999999999


Q ss_pred             hcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 019054          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND  331 (347)
Q Consensus       292 ~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  331 (347)
                      ...|.+..+++.+|.++..+|++++|+..|+++++++|.+
T Consensus        97 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A           97 ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence            9999999999999999999999999999999999999863

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.28  E-value=1.9e-11  Score=114.97  Aligned_cols=114  Identities=20%  Similarity=0.265  Sum_probs=106.2

Q ss_pred             HhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 019054          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (347)
Q Consensus       209 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~  288 (347)
                      +..+..+..+|..+++.|+|++|+..|+++++                  ..|....++.++|.++..+|++++|+..++
T Consensus        23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~   84 (450)
T 2y4t_A           23 MADVEKHLELGKKLLAAGQLADALSQFHAAVD------------------GDPDNYIAYYRRATVFLAMGKSKAALPDLT   84 (450)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCCccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            34678899999999999999999999999999                  778889999999999999999999999999


Q ss_pred             HHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHH
Q 019054          289 FAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG---GIKKELAV  340 (347)
Q Consensus       289 ~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~---~~~~~l~~  340 (347)
                      ++++++|++..+++.+|.+|..+|++++|+..|+++++++|.+.   .++..+..
T Consensus        85 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~  139 (450)
T 2y4t_A           85 KVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIK  139 (450)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHH
T ss_pred             HHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999988   76665543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.28  E-value=1.4e-11  Score=106.67  Aligned_cols=112  Identities=17%  Similarity=0.121  Sum_probs=65.1

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+..+..+|..++..|++++|+..|+++++.                  .|....++.++|.++..+|++++|+..++++
T Consensus        36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a   97 (252)
T 2ho1_A           36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEI------------------DPSSADAHAALAVVFQTEMEPKLADEEYRKA   97 (252)
T ss_dssp             HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHhc------------------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4778899999999999999999999999983                  3333444444444444444444444444444


Q ss_pred             hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHH
Q 019054          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALK--LEPNDGGIKKELAV  340 (347)
Q Consensus       291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~~l~~  340 (347)
                      ++++|.+..+++.+|.++..+|++++|+..|+++++  ..|.+..+...++.
T Consensus        98 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~  149 (252)
T 2ho1_A           98 LASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGL  149 (252)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHH
T ss_pred             HHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHH
Confidence            444444444444444444444444444444444444  34444444443333

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.27  E-value=5.3e-11  Score=89.39  Aligned_cols=84  Identities=13%  Similarity=0.160  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHH
Q 019054          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND------GGIKK  336 (347)
Q Consensus       263 ~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~------~~~~~  336 (347)
                      ...++.++|.++..+|+|++|+..++++++++|+++.+++++|.++..+|++++|+..|+++++++|++      ..+..
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            356789999999999999999999999999999999999999999999999999999999999999998      77777


Q ss_pred             HHHHHHHHhc
Q 019054          337 ELAVAKKKVS  346 (347)
Q Consensus       337 ~l~~~~~~~~  346 (347)
                      .++.+...++
T Consensus        83 ~~~~~~~~~~   92 (111)
T 2l6j_A           83 RLELAQGAVG   92 (111)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7777766543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.27  E-value=2.3e-11  Score=109.15  Aligned_cols=118  Identities=19%  Similarity=0.065  Sum_probs=105.7

Q ss_pred             hHHHHHHcCccccchh-hHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQ-DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g-~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~  289 (347)
                      .+..+..+|..++..| ++++|+..|+++++                  ..|....++.++|.++..+|++++|+..+++
T Consensus        89 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  150 (330)
T 3hym_B           89 NPVSWFAVGCYYLMVGHKNEHARRYLSKATT------------------LEKTYGPAWIAYGHSFAVESEHDQAMAAYFT  150 (330)
T ss_dssp             STHHHHHHHHHHHHSCSCHHHHHHHHHHHHT------------------TCTTCTHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH------------------hCCccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            4567788888999999 89999999999998                  6777788899999999999999999999999


Q ss_pred             HhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       290 al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      ++++.|.+..+++.+|.+|..+|++++|+..|+++++++|.+..+...++.+....+
T Consensus       151 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~  207 (330)
T 3hym_B          151 AAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNG  207 (330)
T ss_dssp             HHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc
Confidence            999999999999999999999999999999999999999999998888887765543

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.26  E-value=2.8e-11  Score=103.91  Aligned_cols=117  Identities=15%  Similarity=0.116  Sum_probs=98.8

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhH---HHHHHHHHHHHHH------------
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTK---SQIFTNSSACKLK------------  276 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~nla~~~~~------------  276 (347)
                      ...+..+|..+++.|+|++|+..|+++++                  ..|..   ..+++.+|.++.+            
T Consensus        41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~------------------~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~  102 (225)
T 2yhc_A           41 QQVQLDLIYAYYKNADLPLAQAAIDRFIR------------------LNPTHPNIDYVMYMRGLTNMALDDSALQGFFGV  102 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCTTHHHHHHHHHHHHHHHHC---------
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHH------------------HCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhcc
Confidence            46788899999999999999999999999                  44433   3478888988876            


Q ss_pred             ------cCChHHHHHHHHHHhhcCCCChhHH-----------------HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH-
Q 019054          277 ------LGDLKGALLDTEFAMRDGDDNVKAL-----------------FRQGQAYMALNDVDAAVESFEKALKLEPNDG-  332 (347)
Q Consensus       277 ------l~~~~~A~~~~~~al~~~p~~~~a~-----------------~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~-  332 (347)
                            +|++++|+..++++++.+|++..++                 +.+|.+|...|++++|+..|+++++..|+++ 
T Consensus       103 ~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~  182 (225)
T 2yhc_A          103 DRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQA  182 (225)
T ss_dssp             -----CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHH
T ss_pred             chhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCc
Confidence                  5789999999999999999987654                 6789999999999999999999999999987 


Q ss_pred             --HHHHHHHHHHHHhc
Q 019054          333 --GIKKELAVAKKKVS  346 (347)
Q Consensus       333 --~~~~~l~~~~~~~~  346 (347)
                        .++..++.+..+++
T Consensus       183 ~~~a~~~l~~~~~~~g  198 (225)
T 2yhc_A          183 TRDALPLMENAYRQMQ  198 (225)
T ss_dssp             HHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHcC
Confidence              45667777665554

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.26  E-value=2.4e-11  Score=115.98  Aligned_cols=106  Identities=24%  Similarity=0.306  Sum_probs=99.3

Q ss_pred             HhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 019054          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (347)
Q Consensus       209 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~  288 (347)
                      .+.+..++..|+.+++.|+|++|+..|+++++                  ..| ...++.++|.|+.++|++++|+..++
T Consensus         3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~------------------~~p-~~~~~~~la~~~~~~g~~~~A~~~~~   63 (514)
T 2gw1_A            3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALE------------------LKE-DPVFYSNLSACYVSVGDLKKVVEMST   63 (514)
T ss_dssp             HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH------------------HCC-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHhccHHHHHHHHHHHHh------------------cCc-cHHHHHhHHHHHHHHhhHHHHHHHHH
Confidence            35788999999999999999999999999999                  556 47899999999999999999999999


Q ss_pred             HHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 019054          289 FAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG  333 (347)
Q Consensus       289 ~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~  333 (347)
                      ++++++|++..+++.+|.+|..+|++++|+..|+++++++|.+..
T Consensus        64 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  108 (514)
T 2gw1_A           64 KALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDA  108 (514)
T ss_dssp             HHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGG
T ss_pred             HHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccc
Confidence            999999999999999999999999999999999999999996544

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.26  E-value=2.3e-11  Score=90.69  Aligned_cols=86  Identities=20%  Similarity=0.188  Sum_probs=74.8

Q ss_pred             HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CHHHHH
Q 019054          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN--DGGIKK  336 (347)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~--~~~~~~  336 (347)
                      .+|....+++++|.+|..+|++++|+..++++++++|+++.+|+.+|.+|..+|++++|+..|++++++.|.  +.....
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~   81 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS   81 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence            356778899999999999999999999999999999999999999999999999999999999999999874  555666


Q ss_pred             HHHHHHHH
Q 019054          337 ELAVAKKK  344 (347)
Q Consensus       337 ~l~~~~~~  344 (347)
                      .+..+...
T Consensus        82 ~l~~~l~~   89 (100)
T 3ma5_A           82 ELQDAKLK   89 (100)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66655443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.25  E-value=3.5e-11  Score=105.18  Aligned_cols=128  Identities=17%  Similarity=0.109  Sum_probs=107.8

Q ss_pred             HhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 019054          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (347)
Q Consensus       209 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~  288 (347)
                      ...+..+..+|..++..|+|++|+..|.+++++......          ...+....++.++|.++..+|++++|+.+++
T Consensus        40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  109 (283)
T 3edt_B           40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLG----------KDHPAVAATLNNLAVLYGKRGKYKEAEPLCK  109 (283)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC----------TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcC----------CcchHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            345778899999999999999999999999984321100          1246778899999999999999999999999


Q ss_pred             HHhhc--------CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhc
Q 019054          289 FAMRD--------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKL--------EPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       289 ~al~~--------~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--------~P~~~~~~~~l~~~~~~~~  346 (347)
                      +++.+        +|....+++.+|.+|..+|++++|+..|++++++        .|....+...++.+....+
T Consensus       110 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  183 (283)
T 3edt_B          110 RALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQG  183 (283)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC
Confidence            99988        5777899999999999999999999999999999        6666677777777765543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.24  E-value=5.4e-11  Score=106.52  Aligned_cols=128  Identities=11%  Similarity=0.054  Sum_probs=87.6

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhcc---------cc----CCCCh-----hhhhhHHhhHHHHHHHHHHH
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW---------EK----EGIDE-----GKSSSLRKTKSQIFTNSSAC  273 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~---------~~----~~~~~-----~~~~~~~~~~~~~~~nla~~  273 (347)
                      ...+..+|..+.+.|++++|+..|+++++.-+...         ..    .....     ++.....|..+.+++++|.+
T Consensus       130 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~  209 (291)
T 3mkr_A          130 LECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAAC  209 (291)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            44556667777777777777777777766322100         00    00000     00112456667788888888


Q ss_pred             HHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHH-HHHHHHHHHhhCCCCHHHHHHHH
Q 019054          274 KLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDA-AVESFEKALKLEPNDGGIKKELA  339 (347)
Q Consensus       274 ~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~-A~~~~~~al~l~P~~~~~~~~l~  339 (347)
                      ++++|++++|+..++++++++|+++.+++++|.++..+|++++ |.+.++++++++|+++.+.....
T Consensus       210 ~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~~~  276 (291)
T 3mkr_A          210 HMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRA  276 (291)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            8888888888888888888888888888888888888888865 45777888888888887776543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.23  E-value=7.9e-11  Score=107.59  Aligned_cols=111  Identities=15%  Similarity=0.149  Sum_probs=102.0

Q ss_pred             HcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhh--HHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC
Q 019054          217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKT--KSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (347)
Q Consensus       217 ~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~  294 (347)
                      ..|..+ ..|++++|+..|+++++                  ..|.  ...++.++|.++..+|++++|+..+++++.++
T Consensus       187 ~~~~~~-~~~~~~~A~~~~~~a~~------------------~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  247 (368)
T 1fch_A          187 ILGSLL-SDSLFLEVKELFLAAVR------------------LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR  247 (368)
T ss_dssp             TTHHHH-HHHHHHHHHHHHHHHHH------------------HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHh-hcccHHHHHHHHHHHHH------------------hCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            344444 89999999999999999                  6677  78899999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       295 p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      |+++.+++.+|.++..+|++++|+..|+++++++|.+..+...++.+...++
T Consensus       248 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g  299 (368)
T 1fch_A          248 PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLG  299 (368)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence            9999999999999999999999999999999999999999999988876654

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.22  E-value=8.5e-11  Score=105.23  Aligned_cols=65  Identities=18%  Similarity=0.086  Sum_probs=35.4

Q ss_pred             CChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054          278 GDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (347)
Q Consensus       278 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  342 (347)
                      |++++|+..++++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+++.++.++..+.
T Consensus       180 ~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~  244 (291)
T 3mkr_A          180 EKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLS  244 (291)
T ss_dssp             THHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            45555555555555555555555555555555555555555555555555555555555554443

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.22  E-value=6.5e-11  Score=112.26  Aligned_cols=123  Identities=17%  Similarity=0.136  Sum_probs=101.4

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+..+..+|.+++..|+|++|+++|++|+++.+....         ...++.....|.|+|.+|..+|++++|+.+++++
T Consensus        50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~---------~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka  120 (472)
T 4g1t_A           50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHA---------DQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKV  120 (472)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSG---------GGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCc---------cccchHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            3567788999999999999999999999996543211         1134556778999999999999999999999999


Q ss_pred             hhcC--------CCChhHHHHHHHHHHhc--CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054          291 MRDG--------DDNVKALFRQGQAYMAL--NDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (347)
Q Consensus       291 l~~~--------p~~~~a~~~~g~~~~~~--~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  342 (347)
                      +++.        +..+.++..+|.++...  ++|++|+.+|+++++++|+++.+...++.+.
T Consensus       121 ~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~  182 (472)
T 4g1t_A          121 KHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIAS  182 (472)
T ss_dssp             HHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            9763        34578888888887665  5799999999999999999999888877664

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.21  E-value=9.2e-11  Score=90.64  Aligned_cols=82  Identities=21%  Similarity=0.189  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (347)
Q Consensus       265 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  344 (347)
                      ..++++|.++++.|++++|+..++++++++|+++.+|+.+|.++..+|++++|+..|+++++++|++..++..++.+...
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   97 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            34788999999999999999999999999999999999999999999999999999999999999999999998887665


Q ss_pred             hc
Q 019054          345 VS  346 (347)
Q Consensus       345 ~~  346 (347)
                      .+
T Consensus        98 ~g   99 (121)
T 1hxi_A           98 EH   99 (121)
T ss_dssp             HH
T ss_pred             cC
Confidence            43

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.21  E-value=1.1e-10  Score=94.71  Aligned_cols=87  Identities=17%  Similarity=0.128  Sum_probs=81.9

Q ss_pred             HhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 019054          260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELA  339 (347)
Q Consensus       260 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~  339 (347)
                      .+..+..+.++|.++++.|+|++|+..|+++++++|+++.+|+.+|.+|..+|+|++|+.+|+++++++|.+..++..++
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg   86 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG   86 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            44567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhc
Q 019054          340 VAKKKVS  346 (347)
Q Consensus       340 ~~~~~~~  346 (347)
                      .+...++
T Consensus        87 ~~~~~~g   93 (164)
T 3sz7_A           87 LARFDMA   93 (164)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHcc
Confidence            8877654

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.21  E-value=6.2e-11  Score=105.97  Aligned_cols=111  Identities=16%  Similarity=0.122  Sum_probs=89.7

Q ss_pred             hHHHHHHcCccccch-hhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKK-QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~-g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~  289 (347)
                      .+..+..+|..+... |+|++|+.+|++|+++.+..            ........++.++|.++.++|+|++|+.++++
T Consensus       116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~------------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  183 (292)
T 1qqe_A          116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD------------QSVALSNKCFIKCADLKALDGQYIEASDIYSK  183 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC------------CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            356788999999996 99999999999999943211            01112357899999999999999999999999


Q ss_pred             HhhcCCCChh-------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 019054          290 AMRDGDDNVK-------ALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG  333 (347)
Q Consensus       290 al~~~p~~~~-------a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~  333 (347)
                      ++++.|++..       +++++|.++..+|++++|+..|+++++++|....
T Consensus       184 al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~  234 (292)
T 1qqe_A          184 LIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD  234 (292)
T ss_dssp             HHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred             HHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence            9999987643       6899999999999999999999999999998654

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.20  E-value=9.6e-11  Score=94.34  Aligned_cols=86  Identities=20%  Similarity=0.212  Sum_probs=78.6

Q ss_pred             hHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC-------Chh-----HHHHHHHHHHhcCCHHHHHHHHHHHHhh--
Q 019054          262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD-------NVK-----ALFRQGQAYMALNDVDAAVESFEKALKL--  327 (347)
Q Consensus       262 ~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~-------~~~-----a~~~~g~~~~~~~~~~~A~~~~~~al~l--  327 (347)
                      ..+..+.++|..++++|+|++|+..|++||+++|+       +..     +|+++|.++..+|+|++|+.+|++|+++  
T Consensus         9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n   88 (159)
T 2hr2_A            9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   88 (159)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence            35667899999999999999999999999999999       443     9999999999999999999999999999  


Q ss_pred             -----CCCCHHHH----HHHHHHHHHhcC
Q 019054          328 -----EPNDGGIK----KELAVAKKKVSR  347 (347)
Q Consensus       328 -----~P~~~~~~----~~l~~~~~~~~~  347 (347)
                           +|++..++    .+++.+...+++
T Consensus        89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr  117 (159)
T 2hr2_A           89 RRGELNQDEGKLWISAVYSRALALDGLGR  117 (159)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccccCCCchHHHHHHHHHhHHHHHHHCCC
Confidence                 99999999    998888877654

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.20  E-value=6.4e-11  Score=115.77  Aligned_cols=104  Identities=18%  Similarity=0.169  Sum_probs=81.7

Q ss_pred             hhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHH
Q 019054          225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQ  304 (347)
Q Consensus       225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~  304 (347)
                      .|++++|+..|+++++                  ..|....++.++|.++..+|++++|+..++++++++|++..+++.+
T Consensus         2 ~g~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   63 (568)
T 2vsy_A            2 TADGPRELLQLRAAVR------------------HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL   63 (568)
T ss_dssp             -------------------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            4789999999999999                  8888899999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          305 GQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       305 g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      |.+|..+|++++|++.|+++++++|++..++..++.+...++
T Consensus        64 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  105 (568)
T 2vsy_A           64 GRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAG  105 (568)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Confidence            999999999999999999999999999999999998876654

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.20  E-value=2.2e-10  Score=102.54  Aligned_cols=110  Identities=15%  Similarity=0.179  Sum_probs=101.8

Q ss_pred             Cc-cccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC
Q 019054          219 GN-EHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN  297 (347)
Q Consensus       219 g~-~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~  297 (347)
                      |. .+...|++++|+..|+++++                  ..|....++.++|.++..+|++++|+..++++++++|++
T Consensus       144 ~~~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  205 (327)
T 3cv0_A          144 EDFFFAAPNEYRECRTLLHAALE------------------MNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD  205 (327)
T ss_dssp             --CCTTSHHHHHHHHHHHHHHHH------------------HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HhHHHHHcccHHHHHHHHHHHHh------------------hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence            44 58899999999999999999                  777788999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          298 VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       298 ~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      ..+++.+|.++..+|++++|+..|+++++++|.+..+...++.+...++
T Consensus       206 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g  254 (327)
T 3cv0_A          206 AQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMS  254 (327)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999998888776554

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.19  E-value=1.1e-10  Score=112.20  Aligned_cols=88  Identities=14%  Similarity=0.035  Sum_probs=74.6

Q ss_pred             HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 019054          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (347)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l  338 (347)
                      ..|....++.++|.++..+|++++|+..++++++++|++..+++.+|.++..+|++++|+..|+++++++|.+..++..+
T Consensus       305 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l  384 (537)
T 3fp2_A          305 LNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFF  384 (537)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            56677788888888888889999999999999888888888888889999888999999999999988888888888888


Q ss_pred             HHHHHHhc
Q 019054          339 AVAKKKVS  346 (347)
Q Consensus       339 ~~~~~~~~  346 (347)
                      +.+....+
T Consensus       385 ~~~~~~~g  392 (537)
T 3fp2_A          385 AEILTDRG  392 (537)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHhC
Confidence            77765543

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.17  E-value=1.1e-11  Score=91.74  Aligned_cols=89  Identities=18%  Similarity=0.121  Sum_probs=48.8

Q ss_pred             HcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHH-HHHHHHHHHHHcCChHHHHHHHHHHhhcCC
Q 019054          217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQ-IFTNSSACKLKLGDLKGALLDTEFAMRDGD  295 (347)
Q Consensus       217 ~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~nla~~~~~l~~~~~A~~~~~~al~~~p  295 (347)
                      ..|..++..|+|++|+..|+++++                  ..|.... +++++|.++..+|++++|+.+++++++++|
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p   66 (99)
T 2kc7_A            5 KTIKELINQGDIENALQALEEFLQ------------------TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP   66 (99)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHH------------------HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH------------------HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            344455555555555555555555                  4444555 555555555555555555555555555555


Q ss_pred             CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 019054          296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND  331 (347)
Q Consensus       296 ~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  331 (347)
                      ++..++++        +.+.+|+..|+++..++|++
T Consensus        67 ~~~~~~~~--------~~~~~a~~~~~~~~~~~p~~   94 (99)
T 2kc7_A           67 DSPALQAR--------KMVMDILNFYNKDMYNQLEH   94 (99)
T ss_dssp             TSTHHHHH--------HHHHHHHHHHCCTTHHHHCC
T ss_pred             CcHHHHHH--------HHHHHHHHHHHHHhccCccc
Confidence            55555433        34455555555555555543

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.17  E-value=2.9e-11  Score=110.54  Aligned_cols=105  Identities=20%  Similarity=0.195  Sum_probs=96.8

Q ss_pred             chhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC------
Q 019054          224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN------  297 (347)
Q Consensus       224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~------  297 (347)
                      ..+++++|+..|++++.                  ..+..+.++.++|.+++++|+|++|+..|++|+.++|.+      
T Consensus       125 ~L~~~~~A~~~~~~a~~------------------~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~  186 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSE------------------EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNE  186 (336)
T ss_dssp             EEEEEECCCCGGGCCHH------------------HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSH
T ss_pred             EEeecccccchhcCCHH------------------HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChH
Confidence            45677778888888887                  889999999999999999999999999999999999998      


Q ss_pred             ---------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          298 ---------VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       298 ---------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                               ..+++++|.+|..+|+|++|+.+|+++++++|++..++..++.+...++
T Consensus       187 ~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g  244 (336)
T 1p5q_A          187 EAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVN  244 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence                     6999999999999999999999999999999999999999998876654

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.16  E-value=1e-10  Score=84.48  Aligned_cols=84  Identities=26%  Similarity=0.323  Sum_probs=78.3

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+..+..+|..++..|+|++|+..|+++++                  ..|....++.++|.++.++|++++|+.+++++
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a   69 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALE------------------LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA   69 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHh------------------cCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            466788999999999999999999999999                  77778889999999999999999999999999


Q ss_pred             hhcCCCChhHHHHHHHHHHhcC
Q 019054          291 MRDGDDNVKALFRQGQAYMALN  312 (347)
Q Consensus       291 l~~~p~~~~a~~~~g~~~~~~~  312 (347)
                      ++++|++..++..+|.++..+|
T Consensus        70 ~~~~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           70 LELDPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HhcCCCCHHHHHHHHHHHHhcC
Confidence            9999999999999999998764

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.15  E-value=1.4e-10  Score=101.24  Aligned_cols=109  Identities=12%  Similarity=0.065  Sum_probs=95.5

Q ss_pred             HhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 019054          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (347)
Q Consensus       209 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~  288 (347)
                      ...+..+..+|..++..|+|++|+..|.+++++......          ...+....++.++|.++..+|++++|+.+++
T Consensus        82 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  151 (283)
T 3edt_B           82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG----------KFHPDVAKQLNNLALLCQNQGKAEEVEYYYR  151 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC----------TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcC----------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            345778899999999999999999999999995432100          0146788999999999999999999999999


Q ss_pred             HHhhc--------CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019054          289 FAMRD--------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKL  327 (347)
Q Consensus       289 ~al~~--------~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l  327 (347)
                      +++++        .|....++..+|.+|..+|++++|+..|++++++
T Consensus       152 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          152 RALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             HHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            99998        7777899999999999999999999999999987

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.15  E-value=3.3e-10  Score=88.47  Aligned_cols=88  Identities=10%  Similarity=0.056  Sum_probs=81.1

Q ss_pred             HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 019054          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (347)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l  338 (347)
                      ..+..+..+.++|.+++..|+|++|+..+++++.++|+++.+++.+|.++..+|++++|+..|+++++++|.+..++..+
T Consensus         4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   83 (137)
T 3q49_B            4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL   83 (137)
T ss_dssp             --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence            44556788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhc
Q 019054          339 AVAKKKVS  346 (347)
Q Consensus       339 ~~~~~~~~  346 (347)
                      +.+...++
T Consensus        84 ~~~~~~~~   91 (137)
T 3q49_B           84 GQCQLEME   91 (137)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHHh
Confidence            98876654

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.15  E-value=2.2e-10  Score=111.76  Aligned_cols=119  Identities=14%  Similarity=0.146  Sum_probs=98.0

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhH-HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTK-SQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      +..+..+|..+.+.|++++|+..|+++++..+..            ..+|.. ..+|.++|.+|.++|++++|+..++++
T Consensus       475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------------~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  542 (597)
T 2xpi_A          475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT------------QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQG  542 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS------------CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc------------ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            3445666666777777777777777776622110            013332 679999999999999999999999999


Q ss_pred             hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (347)
Q Consensus       291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  342 (347)
                      ++++|+++.+|+.+|.+|...|++++|++.|+++++++|+++.++..|+.+.
T Consensus       543 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  594 (597)
T 2xpi_A          543 LLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL  594 (597)
T ss_dssp             HHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred             HHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999888764

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.14  E-value=4.1e-10  Score=82.99  Aligned_cols=78  Identities=21%  Similarity=0.287  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhhcCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH--HHHHHHHH
Q 019054          267 FTNSSACKLKLGDLKGALLDTEFAMRDGDDNVK-ALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIK--KELAVAKK  343 (347)
Q Consensus       267 ~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~-a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~--~~l~~~~~  343 (347)
                      .+++|.++.+.|++++|+..++++++++|++.. +++.+|.+|..+|++++|+..|+++++++|++..++  ..+..+..
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~   82 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARKMVMDILN   82 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence            357899999999999999999999999999999 999999999999999999999999999999999887  55555544


Q ss_pred             H
Q 019054          344 K  344 (347)
Q Consensus       344 ~  344 (347)
                      .
T Consensus        83 ~   83 (99)
T 2kc7_A           83 F   83 (99)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.14  E-value=2.6e-10  Score=109.60  Aligned_cols=118  Identities=20%  Similarity=0.166  Sum_probs=109.4

Q ss_pred             hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (347)
Q Consensus       210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~  289 (347)
                      ..+..+..+|..++..|++++|+..|+++++                  ..|. ..++.++|.++..+|++++|+..+++
T Consensus       241 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~------------------~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~  301 (537)
T 3fp2_A          241 NAALALCYTGIFHFLKNNLLDAQVLLQESIN------------------LHPT-PNSYIFLALTLADKENSQEFFKFFQK  301 (537)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCCC-HHHHHHHHHHTCCSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHh------------------cCCC-chHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            3466788899999999999999999999999                  6677 78999999999999999999999999


Q ss_pred             HhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       290 al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      ++.++|+++.+++.+|.++..+|++++|+..|+++++++|.+..++..++.+....+
T Consensus       302 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g  358 (537)
T 3fp2_A          302 AVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQG  358 (537)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTT
T ss_pred             HhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            999999999999999999999999999999999999999999999998888876543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.13  E-value=1.3e-10  Score=86.86  Aligned_cols=85  Identities=13%  Similarity=0.177  Sum_probs=79.0

Q ss_pred             hhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CHHHHHHH
Q 019054          261 KTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN--DGGIKKEL  338 (347)
Q Consensus       261 ~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~--~~~~~~~l  338 (347)
                      |....++.++|.++...|++++|+..++++++++|.+..+++.+|.++..+|++++|+..|+++++++|.  +..++..+
T Consensus         3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l   82 (112)
T 2kck_A            3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK   82 (112)
T ss_dssp             CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence            3455678999999999999999999999999999999999999999999999999999999999999999  99999999


Q ss_pred             HHHHHHh
Q 019054          339 AVAKKKV  345 (347)
Q Consensus       339 ~~~~~~~  345 (347)
                      +.+...+
T Consensus        83 ~~~~~~~   89 (112)
T 2kck_A           83 ADALRYI   89 (112)
T ss_dssp             HHHHTTC
T ss_pred             HHHHHHH
Confidence            8887654

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.13  E-value=2.9e-10  Score=105.22  Aligned_cols=125  Identities=12%  Similarity=0.080  Sum_probs=92.3

Q ss_pred             hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (347)
Q Consensus       210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~  289 (347)
                      ..+..+..+|..++..|++++|+.+|.+|+++.+...           ...+....++.++|.+|..+|++++|+.++++
T Consensus       141 ~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  209 (383)
T 3ulq_A          141 EKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHE-----------AYNIRLLQCHSLFATNFLDLKQYEDAISHFQK  209 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCS-----------TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc-----------cchHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            3677889999999999999999999999999654320           01445567788888888888888888888888


Q ss_pred             HhhcCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----C-CCCHHHHHHHHHHHHHh
Q 019054          290 AMRDGDDN------VKALFRQGQAYMALNDVDAAVESFEKALKL-----E-PNDGGIKKELAVAKKKV  345 (347)
Q Consensus       290 al~~~p~~------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l-----~-P~~~~~~~~l~~~~~~~  345 (347)
                      |+++.+..      +.+++++|.+|..+|++++|+..|++++++     + |....+...++.+...+
T Consensus       210 al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~  277 (383)
T 3ulq_A          210 AYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKL  277 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHC
Confidence            88765433      357788888888888888888888888873     4 55556666666665443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.12  E-value=1.5e-10  Score=103.44  Aligned_cols=107  Identities=10%  Similarity=0.079  Sum_probs=92.8

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+..+..+|..++..|+|++|+.+|+++++.+...           ....+....+++|+|.+|.++|+|++|+.++++|
T Consensus       154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~-----------~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~a  222 (293)
T 3u3w_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL-----------HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA  222 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-----------SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-----------ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            45678999999999999999999999999865432           0145567789999999999999999999999999


Q ss_pred             hhcCCCC------hhHHHHHHHHHHhcC-CHHHHHHHHHHHHhhC
Q 019054          291 MRDGDDN------VKALFRQGQAYMALN-DVDAAVESFEKALKLE  328 (347)
Q Consensus       291 l~~~p~~------~~a~~~~g~~~~~~~-~~~~A~~~~~~al~l~  328 (347)
                      +++.+..      +.+++++|.+|..+| .+++|+..|++|+.+.
T Consensus       223 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          223 IEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            9886543      789999999999999 5799999999999874

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=99.12  E-value=3.7e-10  Score=89.82  Aligned_cols=106  Identities=13%  Similarity=0.178  Sum_probs=94.0

Q ss_pred             cchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcC---ChHHHHHHHHHHhhcC-C-CC
Q 019054          223 YKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG---DLKGALLDTEFAMRDG-D-DN  297 (347)
Q Consensus       223 ~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~---~~~~A~~~~~~al~~~-p-~~  297 (347)
                      ........+.+.|.+.+.                  ..+....+.+++|.|+.+.+   +.++++..++.+++.+ | .+
T Consensus         9 l~~~~l~~~~~~y~~e~~------------------~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~   70 (152)
T 1pc2_A            9 VSVEDLLKFEKKFQSEKA------------------AGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQ   70 (152)
T ss_dssp             CCHHHHHHHHHHHHHHHH------------------TTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHc------------------cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccch
Confidence            345667778888888877                  55677889999999999988   6779999999999998 7 56


Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          298 VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       298 ~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      .+++|++|.+|+.+++|++|.++++++++++|++.++......++++++
T Consensus        71 rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~~  119 (152)
T 1pc2_A           71 RDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK  119 (152)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998888764

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.11  E-value=4.5e-10  Score=89.30  Aligned_cols=108  Identities=16%  Similarity=0.206  Sum_probs=90.2

Q ss_pred             hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (347)
Q Consensus       210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~  289 (347)
                      ..+..+..+|..++..|+|++|+.+|.+++++.+..            ........++.++|.++..+|++++|+.++++
T Consensus         7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~   74 (164)
T 3ro3_A            7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF------------GDKAAERIAYSNLGNAYIFLGEFETASEYYKK   74 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh------------CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            367788999999999999999999999999854321            12234456899999999999999999999999


Q ss_pred             HhhcCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 019054          290 AMRDGDDN------VKALFRQGQAYMALNDVDAAVESFEKALKLEP  329 (347)
Q Consensus       290 al~~~p~~------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P  329 (347)
                      ++.+.+..      ..+++.+|.++..+|++++|+..+++++++.+
T Consensus        75 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  120 (164)
T 3ro3_A           75 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ  120 (164)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            99876543      67899999999999999999999999998854

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.10  E-value=2.8e-10  Score=108.53  Aligned_cols=114  Identities=18%  Similarity=0.188  Sum_probs=95.8

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHH------HHHHHHHHHHH---cCChHH
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQ------IFTNSSACKLK---LGDLKG  282 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~nla~~~~~---l~~~~~  282 (347)
                      +..+..+|..++..|++++|+..|+++++                  ..|....      ++.++|.++..   +|++++
T Consensus       372 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  433 (514)
T 2gw1_A          372 PEVPNFFAEILTDKNDFDKALKQYDLAIE------------------LENKLDGIYVGIAPLVGKATLLTRNPTVENFIE  433 (514)
T ss_dssp             SHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hhhccchHHHHHHHHHHHHHHHhhhhhcCCHHH
Confidence            34455666666666677777777776666                  5555533      89999999999   999999


Q ss_pred             HHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 019054          283 ALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK  343 (347)
Q Consensus       283 A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  343 (347)
                      |+..+++++.++|++..+++.+|.+|..+|++++|+..|+++++++|.++.+...+...+.
T Consensus       434 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  494 (514)
T 2gw1_A          434 ATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEA  494 (514)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998887665543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.10  E-value=5.4e-10  Score=109.02  Aligned_cols=118  Identities=16%  Similarity=0.032  Sum_probs=104.2

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+..+..+|..+.+.|++++|+..|+++++                  ..|....+|.+++.+|.+.|++++|+..++++
T Consensus       372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  433 (597)
T 2xpi_A          372 KAVTWLAVGIYYLCVNKISEARRYFSKSST------------------MDPQFGPAWIGFAHSFAIEGEHDQAISAYTTA  433 (597)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhccHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            355677788888999999999999999988                  67777889999999999999999999999999


Q ss_pred             hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      ++..|++..+++.+|.+|...|++++|++.|+++++++|.+..++..+..+....+
T Consensus       434 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  489 (597)
T 2xpi_A          434 ARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKS  489 (597)
T ss_dssp             HHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT
T ss_pred             HHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999988888877765443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.09  E-value=2.7e-10  Score=91.67  Aligned_cols=100  Identities=16%  Similarity=0.158  Sum_probs=89.6

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+..+..+|..++..|+|++|+..|.++++                  ..|....++.++|.++..+|++++|+.+++++
T Consensus        46 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  107 (166)
T 1a17_A           46 NAIYYGNRSLAYLRTECYGYALGDATRAIE------------------LDKKYIKGYYRRAASNMALGKFRAALRDYETV  107 (166)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCcccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            466788899999999999999999999999                  77888899999999999999999999999999


Q ss_pred             hhcCCCChhHHHH--HHHHHHhcCCHHHHHHHHHHHHhhC
Q 019054          291 MRDGDDNVKALFR--QGQAYMALNDVDAAVESFEKALKLE  328 (347)
Q Consensus       291 l~~~p~~~~a~~~--~g~~~~~~~~~~~A~~~~~~al~l~  328 (347)
                      ++++|.+..++..  ++..+..+|++++|+..++++..+.
T Consensus       108 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  147 (166)
T 1a17_A          108 VKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV  147 (166)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence            9999999888855  4555888999999999999887653

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.09  E-value=5.2e-10  Score=103.52  Aligned_cols=108  Identities=17%  Similarity=0.194  Sum_probs=95.3

Q ss_pred             hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (347)
Q Consensus       210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~  289 (347)
                      ..+..+..+|..+...|+|++|+.+|.+|+++.+..            ...+....++.|+|.+|..+|++++|+.++++
T Consensus       182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------------~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~  249 (383)
T 3ulq_A          182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE------------KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKR  249 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc------------CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            356778899999999999999999999999965432            12455667999999999999999999999999


Q ss_pred             Hhh-----cC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 019054          290 AMR-----DG-DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP  329 (347)
Q Consensus       290 al~-----~~-p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P  329 (347)
                      |++     .+ |..+.+++.+|.+|..+|++++|+..+++++++.+
T Consensus       250 al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  295 (383)
T 3ulq_A          250 AIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ  295 (383)
T ss_dssp             HHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            998     46 77899999999999999999999999999999864

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.08  E-value=8.5e-11  Score=112.06  Aligned_cols=105  Identities=15%  Similarity=0.169  Sum_probs=95.9

Q ss_pred             chhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC------
Q 019054          224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN------  297 (347)
Q Consensus       224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~------  297 (347)
                      ..++|++|+..|.+++.                  ..+..+.++.++|.+++++++|++|+..|++|++++|.+      
T Consensus       246 ~l~~~~~A~~~~~~~~~------------------~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~  307 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTK------------------EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEK  307 (457)
T ss_dssp             EEEEEECCCCGGGSCHH------------------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHH
T ss_pred             hhhhcccCcchhhcCHH------------------HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChH
Confidence            45667777777777777                  788899999999999999999999999999999999998      


Q ss_pred             ---------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          298 ---------VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       298 ---------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                               ..+|+++|.+|..+++|++|+.+|+++++++|++..++..++.+...++
T Consensus       308 ~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g  365 (457)
T 1kt0_A          308 ESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMN  365 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcc
Confidence                     6999999999999999999999999999999999999999998876654

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.08  E-value=3.4e-10  Score=94.80  Aligned_cols=108  Identities=13%  Similarity=0.024  Sum_probs=87.8

Q ss_pred             cccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCh--
Q 019054          221 EHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNV--  298 (347)
Q Consensus       221 ~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~--  298 (347)
                      .....++|+.|.+.|.....                  ..+.....+.++|.+++..|+|++|+..+++++.+.|.++  
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~   74 (198)
T 2fbn_A           13 GRENLYFQGAKKSIYDYTDE------------------EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEW   74 (198)
T ss_dssp             ---------CCCSGGGCCHH------------------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTC
T ss_pred             hhhhhhhccccCchhhCCHH------------------HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccccc
Confidence            33445556666655554444                  6677788999999999999999999999999999999887  


Q ss_pred             --------------hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          299 --------------KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       299 --------------~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                                    .+++++|.+|..+|+|++|+.+|+++++++|.+..+...++.+...++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~  136 (198)
T 2fbn_A           75 DDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFG  136 (198)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcc
Confidence                          899999999999999999999999999999999999999988876554

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.07  E-value=7.8e-10  Score=102.25  Aligned_cols=109  Identities=17%  Similarity=0.076  Sum_probs=96.6

Q ss_pred             hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (347)
Q Consensus       210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~  289 (347)
                      ..+..+..+|..+...|+|++|+.+|.+|+++.+..            ...+....++.|+|.+|..+|++++|+.++++
T Consensus       180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~------------~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~  247 (378)
T 3q15_A          180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI------------QNDRFIAISLLNIANSYDRSGDDQMAVEHFQK  247 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc------------CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            357778899999999999999999999999965322            12345678899999999999999999999999


Q ss_pred             Hhh-----cCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 019054          290 AMR-----DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN  330 (347)
Q Consensus       290 al~-----~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  330 (347)
                      |+.     .+|..+.+++.+|.+|..+|++++|+..+++++++.+.
T Consensus       248 al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          248 AAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             HHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            999     78888999999999999999999999999999999664

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.07  E-value=2e-10  Score=103.41  Aligned_cols=105  Identities=13%  Similarity=0.015  Sum_probs=50.8

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  291 (347)
                      +..+.++|..+...|+|++|+.+|++|+.+....            ........++.++|.+|.. |++++|+.++++|+
T Consensus        76 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~------------g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al  142 (307)
T 2ifu_A           76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN------------GTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAA  142 (307)
T ss_dssp             HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT------------TCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc------------CCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Confidence            4455556666666666666666666666643211            0011223444445555544 55555555555554


Q ss_pred             hcCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 019054          292 RDGDDN------VKALFRQGQAYMALNDVDAAVESFEKALKLEP  329 (347)
Q Consensus       292 ~~~p~~------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P  329 (347)
                      .+.|..      ..++.++|.+|..+|+|++|+..|++++++.|
T Consensus       143 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  186 (307)
T 2ifu_A          143 AVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYK  186 (307)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            443322      34444445555555555555555555554443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.07  E-value=4.6e-10  Score=99.63  Aligned_cols=127  Identities=17%  Similarity=0.114  Sum_probs=105.3

Q ss_pred             hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (347)
Q Consensus       210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~  289 (347)
                      ..+..+..+|..++..|++++|+..|++++++......          ...+....++.++|.++..+|++++|+..+++
T Consensus        67 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  136 (311)
T 3nf1_A           67 DVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG----------KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKR  136 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC----------TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC----------CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            34667888999999999999999999999985422100          02467788999999999999999999999999


Q ss_pred             HhhcC--------CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhc
Q 019054          290 AMRDG--------DDNVKALFRQGQAYMALNDVDAAVESFEKALKL--------EPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       290 al~~~--------p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--------~P~~~~~~~~l~~~~~~~~  346 (347)
                      ++++.        |....+++.+|.++..+|++++|+..|++++++        .|....+...++.+....+
T Consensus       137 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  209 (311)
T 3nf1_A          137 ALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQG  209 (311)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence            99874        566889999999999999999999999999998        6666667777777665543

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.06  E-value=7.3e-10  Score=98.33  Aligned_cols=109  Identities=12%  Similarity=0.057  Sum_probs=94.1

Q ss_pred             HhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 019054          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (347)
Q Consensus       209 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~  288 (347)
                      ...+..+..+|..++..|++++|+..|++++++......          ...+....++.++|.++..+|++++|+.+++
T Consensus       108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~----------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  177 (311)
T 3nf1_A          108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG----------KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQ  177 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC----------TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcC----------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            345677889999999999999999999999984321100          0236778899999999999999999999999


Q ss_pred             HHhhc--------CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019054          289 FAMRD--------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKL  327 (347)
Q Consensus       289 ~al~~--------~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l  327 (347)
                      +++.+        .|....+++.+|.+|..+|++++|+..|++++++
T Consensus       178 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  224 (311)
T 3nf1_A          178 RALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR  224 (311)
T ss_dssp             HHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            99988        6777889999999999999999999999999985

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.06  E-value=1.5e-09  Score=83.66  Aligned_cols=88  Identities=17%  Similarity=0.187  Sum_probs=82.0

Q ss_pred             HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 019054          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (347)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l  338 (347)
                      ..+....+++++|.++...|++++|+..++++++.+|.+..+++.+|.++..+|++++|+..|+++++++|.+..+...+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l   90 (133)
T 2lni_A           11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK   90 (133)
T ss_dssp             SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence            45667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhc
Q 019054          339 AVAKKKVS  346 (347)
Q Consensus       339 ~~~~~~~~  346 (347)
                      +.+...++
T Consensus        91 a~~~~~~~   98 (133)
T 2lni_A           91 AAALEAMK   98 (133)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHHh
Confidence            88876554

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.06  E-value=5.6e-10  Score=100.42  Aligned_cols=116  Identities=10%  Similarity=0.051  Sum_probs=76.8

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHH-HHHHHHHHHHHcCChHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQ-IFTNSSACKLKLGDLKGALLDTEF  289 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~nla~~~~~l~~~~~A~~~~~~  289 (347)
                      .+..+...|..+.+.|++++|...|+++++                  ..|.... +|.++|.++.++|++++|+..+++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  159 (308)
T 2ond_A           98 NMLLYFAYADYEESRMKYEKVHSIYNRLLA------------------IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK  159 (308)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------------------SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHh------------------ccccCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            344566777777777888888888888887                  4444443 677777777777777777777777


Q ss_pred             HhhcCCCChhHHHHHHHHHH-hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054          290 AMRDGDDNVKALFRQGQAYM-ALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (347)
Q Consensus       290 al~~~p~~~~a~~~~g~~~~-~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  344 (347)
                      |++.+|.+..+|...+.... .+|++++|+..|+++++++|++..++..+..+...
T Consensus       160 a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  215 (308)
T 2ond_A          160 AREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH  215 (308)
T ss_dssp             HHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            77776666666655544432 25677777777777777777666666666555443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.05  E-value=6.2e-10  Score=100.18  Aligned_cols=108  Identities=13%  Similarity=0.047  Sum_probs=91.8

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+..+.++|..+.. |+|++|+.+|++|+++.+..            ........++.++|.+|.++|+|++|+.+++++
T Consensus       115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~------------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  181 (307)
T 2ifu_A          115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE------------ERLRQAAELIGKASRLLVRQQKFDEAAASLQKE  181 (307)
T ss_dssp             HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC------------CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            46788899999998 99999999999999954321            012234678999999999999999999999999


Q ss_pred             hhcCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 019054          291 MRDGDDN------VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG  332 (347)
Q Consensus       291 l~~~p~~------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  332 (347)
                      +.+.|.+      ..+++.+|.++..+|++++|+..|++++ ++|...
T Consensus       182 l~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~  228 (307)
T 2ifu_A          182 KSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS  228 (307)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred             HHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence            9987654      3588999999999999999999999999 999644

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.04  E-value=9.7e-10  Score=101.59  Aligned_cols=126  Identities=16%  Similarity=0.038  Sum_probs=103.2

Q ss_pred             hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (347)
Q Consensus       210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~  289 (347)
                      ..+..+..+|..++..|+++.|+.+|.+|+++.+..           ....+..+.++.++|.+|..+|+|++|+.++++
T Consensus       139 ~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~-----------~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~  207 (378)
T 3q15_A          139 EKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH-----------PLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEA  207 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS-----------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC-----------CCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            356778888888889999999999999998865422           001345678999999999999999999999999


Q ss_pred             HhhcCC------CChhHHHHHHHHHHhcCCHHHHHHHHHHHHh-----hCCCCHHHHHHHHHHHHHhc
Q 019054          290 AMRDGD------DNVKALFRQGQAYMALNDVDAAVESFEKALK-----LEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       290 al~~~p------~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~-----l~P~~~~~~~~l~~~~~~~~  346 (347)
                      |+++.+      ..+.+++++|.+|..+|++++|+..|+++++     .+|....+...++.+...++
T Consensus       208 al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g  275 (378)
T 3q15_A          208 ALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAG  275 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCC
Confidence            998743      1257899999999999999999999999999     77777777888877765543

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.04  E-value=1.2e-09  Score=88.46  Aligned_cols=85  Identities=18%  Similarity=0.134  Sum_probs=79.0

Q ss_pred             hHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc------------------CCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 019054          262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMRD------------------GDDNVKALFRQGQAYMALNDVDAAVESFEK  323 (347)
Q Consensus       262 ~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~------------------~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~  323 (347)
                      ..+..+.++|..+++.|+|++|+..|++|+.+                  +|.+..+|+++|.+|..+|+|++|+.++++
T Consensus         9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~   88 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE   88 (162)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            35678999999999999999999999999999                  777889999999999999999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHhc
Q 019054          324 ALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       324 al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      +++++|.+..++..++.+...++
T Consensus        89 al~~~p~~~~a~~~~g~~~~~~g  111 (162)
T 3rkv_A           89 VLKREETNEKALFRRAKARIAAW  111 (162)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHTT
T ss_pred             HHhcCCcchHHHHHHHHHHHHHh
Confidence            99999999999999998877654

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.03  E-value=8.8e-10  Score=91.81  Aligned_cols=107  Identities=9%  Similarity=0.029  Sum_probs=92.0

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+..+..+|..++..|+|++|+.+|.+++++....            ...+....++.++|.++..+|++++|+.+++++
T Consensus        25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   92 (203)
T 3gw4_A           25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS------------GDHTAEHRALHQVGMVERMAGNWDAARRCFLEE   92 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc------------CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            56778899999999999999999999999965432            235567788999999999999999999999999


Q ss_pred             hhc---CC----CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 019054          291 MRD---GD----DNVKALFRQGQAYMALNDVDAAVESFEKALKLEP  329 (347)
Q Consensus       291 l~~---~p----~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P  329 (347)
                      +.+   .+    ....+++.+|.++..+|++++|+..+++++++.+
T Consensus        93 l~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  138 (203)
T 3gw4_A           93 RELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQ  138 (203)
T ss_dssp             HHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            988   33    2367899999999999999999999999998753

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.02  E-value=3.8e-09  Score=79.33  Aligned_cols=84  Identities=20%  Similarity=0.158  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (347)
Q Consensus       263 ~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  342 (347)
                      .+..++++|.++...|++++|+..+++++..+|.++.+++.+|.++..+|++++|+..++++++++|.+..+...++.+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999888877


Q ss_pred             HHhc
Q 019054          343 KKVS  346 (347)
Q Consensus       343 ~~~~  346 (347)
                      ...+
T Consensus        83 ~~~~   86 (118)
T 1elw_A           83 EFLN   86 (118)
T ss_dssp             HHTT
T ss_pred             HHHh
Confidence            6543

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.02  E-value=1.1e-09  Score=104.89  Aligned_cols=124  Identities=10%  Similarity=0.021  Sum_probs=101.0

Q ss_pred             hhHHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHH
Q 019054          204 ELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGA  283 (347)
Q Consensus       204 ~~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A  283 (347)
                      ........+....+.+..+..+|+|++|+..|+++|++.......          ..|..+..+.|+|.+|..+|+|++|
T Consensus       301 ~v~~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~----------~Hp~~a~~~~nLa~~y~~~g~~~eA  370 (490)
T 3n71_A          301 VVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFAD----------TNLYVLRLLSIASEVLSYLQAYEEA  370 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCT----------TSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCC----------CCHHHHHHHHHHHHHHHHhcCHHHH
Confidence            344455566667777777888999999999999999965543222          4677889999999999999999999


Q ss_pred             HHHHHHHhhc-----CCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCCHHHHHH
Q 019054          284 LLDTEFAMRD-----GDD---NVKALFRQGQAYMALNDVDAAVESFEKALKL-----EPNDGGIKKE  337 (347)
Q Consensus       284 ~~~~~~al~~-----~p~---~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l-----~P~~~~~~~~  337 (347)
                      +.+++++|++     .|+   -+..+.++|.+|..+|+|++|+..|++|+++     -|+++.....
T Consensus       371 ~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~  437 (490)
T 3n71_A          371 SHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDL  437 (490)
T ss_dssp             HHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHH
Confidence            9999999965     233   4678999999999999999999999999986     4677765543

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.01  E-value=1.3e-10  Score=106.28  Aligned_cols=103  Identities=14%  Similarity=0.059  Sum_probs=59.0

Q ss_pred             HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (347)
Q Consensus       214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  293 (347)
                      .+.++|..+++.|+|++|+.+|+++|+                  ++|.+..+++++|.+|..+|+|++|+.++++++++
T Consensus       232 ~~~nla~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l  293 (338)
T 2if4_A          232 CHLNIAACLIKLKRYDEAIGHCNIVLT------------------EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY  293 (338)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            678899999999999999999999999                  88889999999999999999999999999999999


Q ss_pred             CCCChhHHHHHHHHH-HhcCCHHHHHHHHHHHHhhCCCCHHH
Q 019054          294 GDDNVKALFRQGQAY-MALNDVDAAVESFEKALKLEPNDGGI  334 (347)
Q Consensus       294 ~p~~~~a~~~~g~~~-~~~~~~~~A~~~~~~al~l~P~~~~~  334 (347)
                      +|++..++..++.+. ...+..++|...|++++.+.|.++..
T Consensus       294 ~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~~  335 (338)
T 2if4_A          294 APDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGAK  335 (338)
T ss_dssp             ------------------------------------------
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCC
Confidence            999999999999984 45567888999999999999987654

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.01  E-value=5.7e-09  Score=79.79  Aligned_cols=88  Identities=15%  Similarity=0.204  Sum_probs=82.2

Q ss_pred             HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 019054          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (347)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l  338 (347)
                      ..+....++..+|.++...+++++|+..+++++..+|++..+++.+|.++..+|++++|+..++++++++|.+..+...+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~   86 (131)
T 2vyi_A            7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRM   86 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHH
Confidence            56778889999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHhc
Q 019054          339 AVAKKKVS  346 (347)
Q Consensus       339 ~~~~~~~~  346 (347)
                      +.+...++
T Consensus        87 ~~~~~~~~   94 (131)
T 2vyi_A           87 GLALSSLN   94 (131)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHhC
Confidence            88766543

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.00  E-value=8.3e-11  Score=112.75  Aligned_cols=106  Identities=16%  Similarity=0.166  Sum_probs=93.2

Q ss_pred             HHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHH
Q 019054          208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDT  287 (347)
Q Consensus       208 ~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~  287 (347)
                      ..+.+..+..+|..+++.|+|++|+..|++|++                  .+|....+++++|.+|..+|++++|+..+
T Consensus        36 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~------------------l~p~~~~~~~~lg~~~~~~g~~~eA~~~~   97 (477)
T 1wao_1           36 NPSNAIYYGNRSLAYLRTECYGYALGDATRAIE------------------LDKKYIKGYYRRAASNMALGKFRAALRDY   97 (477)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------SCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            344577889999999999999999999999999                  78888999999999999999999999999


Q ss_pred             HHHhhcCCCChhHHHHHHHH--HHhcCCHHHHHHHHH-----------HHHhhCCCC
Q 019054          288 EFAMRDGDDNVKALFRQGQA--YMALNDVDAAVESFE-----------KALKLEPND  331 (347)
Q Consensus       288 ~~al~~~p~~~~a~~~~g~~--~~~~~~~~~A~~~~~-----------~al~l~P~~  331 (347)
                      ++|++++|++..++..++.+  +..+|++++|++.++           ++++++|..
T Consensus        98 ~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1           98 ETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             HHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence            99999999999999999999  889999999999999           888888753

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.00  E-value=9.4e-10  Score=98.14  Aligned_cols=120  Identities=12%  Similarity=0.075  Sum_probs=94.9

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+..+..+|..++..|+|++|+.+|++|+.+.....           ........+++|+|.+|.++|+|++|+.+++++
T Consensus       154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~-----------~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~ka  222 (293)
T 2qfc_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH-----------DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA  222 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC-----------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC-----------ccccchHHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence            467889999999999999999999999997543210           011123378999999999999999999999999


Q ss_pred             hhcCCC------ChhHHHHHHHHHHhcCCHHHH-HHHHHHHHhhCC--CCHHHHHHHHHH
Q 019054          291 MRDGDD------NVKALFRQGQAYMALNDVDAA-VESFEKALKLEP--NDGGIKKELAVA  341 (347)
Q Consensus       291 l~~~p~------~~~a~~~~g~~~~~~~~~~~A-~~~~~~al~l~P--~~~~~~~~l~~~  341 (347)
                      +++.+.      -+.+++++|.+|..+|++++| ...|++|+.+..  ++......+...
T Consensus       223 l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~~~~~~~~~~~  282 (293)
T 2qfc_A          223 IEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAYKEALVNK  282 (293)
T ss_dssp             HHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCcHhhHHHHHHH
Confidence            987643      278999999999999999999 788999988753  344444444433

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.99  E-value=4.6e-09  Score=92.21  Aligned_cols=76  Identities=22%  Similarity=0.058  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHH----cCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHH
Q 019054          263 KSQIFTNSSACKLK----LGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMA----LNDVDAAVESFEKALKLEPNDGGI  334 (347)
Q Consensus       263 ~~~~~~nla~~~~~----l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~----~~~~~~A~~~~~~al~l~P~~~~~  334 (347)
                      ...+++++|.+|..    .+++++|+.+++++++.+  ++.+++.+|.+|..    .+++++|+..|++++++.  +..+
T Consensus        73 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a  148 (273)
T 1ouv_A           73 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDG  148 (273)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred             CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHH
Confidence            45566666666666    666666666666666653  56666666666666    666666666666666654  4455


Q ss_pred             HHHHHHHH
Q 019054          335 KKELAVAK  342 (347)
Q Consensus       335 ~~~l~~~~  342 (347)
                      ...++.+.
T Consensus       149 ~~~lg~~~  156 (273)
T 1ouv_A          149 CTILGSLY  156 (273)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555544

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.99  E-value=3e-09  Score=81.92  Aligned_cols=82  Identities=20%  Similarity=0.156  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCh---hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHHH
Q 019054          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNV---KALFRQGQAYMALNDVDAAVESFEKALKLEPND---GGIKKEL  338 (347)
Q Consensus       265 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~---~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~---~~~~~~l  338 (347)
                      .+++++|.+++..|+|++|+..++++++.+|++.   .+++.+|.++..+|++++|+..|+++++++|++   +.+...+
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l   82 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL   82 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence            3578899999999999999999999999999998   899999999999999999999999999999999   7888888


Q ss_pred             HHHHHHhc
Q 019054          339 AVAKKKVS  346 (347)
Q Consensus       339 ~~~~~~~~  346 (347)
                      +.+...++
T Consensus        83 a~~~~~~g   90 (129)
T 2xev_A           83 GLSQYGEG   90 (129)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHcC
Confidence            88766544

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.99  E-value=8.4e-10  Score=104.53  Aligned_cols=122  Identities=14%  Similarity=0.065  Sum_probs=96.6

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHc--CChHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL--GDLKGALLDTE  288 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l--~~~~~A~~~~~  288 (347)
                      .+..+.++|.+++..|+|++|+.+|++++++.+.....          ..+..+.++.++|.++.++  ++|++|+.+|+
T Consensus        93 ~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~----------~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~  162 (472)
T 4g1t_A           93 SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP----------YRIESPELDCEEGWTRLKCGGNQNERAKVCFE  162 (472)
T ss_dssp             THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS----------SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc----------cchhhHHHHHHHHHHHHHHccccHHHHHHHHH
Confidence            35567889999999999999999999999865433111          1223456788888777765  46999999999


Q ss_pred             HHhhcCCCChhHHHHHHHHHHh---cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054          289 FAMRDGDDNVKALFRQGQAYMA---LNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (347)
Q Consensus       289 ~al~~~p~~~~a~~~~g~~~~~---~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  342 (347)
                      +|++++|+++.+++.+|.++..   .+++++|++.|+++++++|.+..+...++...
T Consensus       163 kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~  219 (472)
T 4g1t_A          163 KALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKL  219 (472)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHH
Confidence            9999999999999998888554   56778899999999999999988887776543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.99  E-value=1.9e-09  Score=85.56  Aligned_cols=107  Identities=21%  Similarity=0.170  Sum_probs=91.0

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  291 (347)
                      +..+..+|..++..|+|++|+.+|++++++.+..            ...+....++.++|.++..+|++++|+.++++++
T Consensus        49 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  116 (164)
T 3ro3_A           49 RIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL------------KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL  116 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh------------CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            4578889999999999999999999999965432            1233457789999999999999999999999999


Q ss_pred             hcCCC------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 019054          292 RDGDD------NVKALFRQGQAYMALNDVDAAVESFEKALKLEPN  330 (347)
Q Consensus       292 ~~~p~------~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  330 (347)
                      .+.+.      ...+++.+|.++..+|++++|+..+++++++...
T Consensus       117 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          117 AIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            77432      2678999999999999999999999999988654

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.99  E-value=4.4e-09  Score=99.14  Aligned_cols=124  Identities=12%  Similarity=0.090  Sum_probs=97.5

Q ss_pred             HHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHH
Q 019054          208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDT  287 (347)
Q Consensus       208 ~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~  287 (347)
                      ....+......+......|+|++|+..|+++|++.......          ..|..+..+.|+|.+|..+|+|++|+.++
T Consensus       294 ~~~~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~----------~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~  363 (433)
T 3qww_A          294 MVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFED----------SNVYMLHMMYQAMGVCLYMQDWEGALKYG  363 (433)
T ss_dssp             HHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCT----------TSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccCh----------hchHHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence            33344444444555556789999999999999965543222          46778889999999999999999999999


Q ss_pred             HHHhhc--------CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCCHHHHHHHHHH
Q 019054          288 EFAMRD--------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKL-----EPNDGGIKKELAVA  341 (347)
Q Consensus       288 ~~al~~--------~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l-----~P~~~~~~~~l~~~  341 (347)
                      +++|++        .|+-+..+.++|.+|..+|+|++|+..|++|+++     -|+++.+......+
T Consensus       364 ~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l  430 (433)
T 3qww_A          364 QKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEI  430 (433)
T ss_dssp             HHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence            999965        2344678999999999999999999999999987     47788776654444

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.99  E-value=6.4e-10  Score=99.25  Aligned_cols=122  Identities=15%  Similarity=0.067  Sum_probs=95.9

Q ss_pred             HHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 019054          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (347)
Q Consensus       213 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  292 (347)
                      ..+..+|..++..++|++|+.+|++++.+....      .      .......++.++|.+|..+|+|++|+.++++|++
T Consensus       116 ~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~------~------~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~  183 (293)
T 3u3w_A          116 QWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG------I------DVYQNLYIENAIANIYAENGYLKKGIDLFEQILK  183 (293)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCC------S------CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccCHHHHHHHHHHHHHHhccc------c------cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344568888888999999999999999832211      0      1123456899999999999999999999999994


Q ss_pred             c-------CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhc
Q 019054          293 D-------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND------GGIKKELAVAKKKVS  346 (347)
Q Consensus       293 ~-------~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~------~~~~~~l~~~~~~~~  346 (347)
                      .       .+....+++++|.+|..+|+|++|+..+++++++.+..      ..+...++.+...++
T Consensus       184 ~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g  250 (293)
T 3u3w_A          184 QLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLE  250 (293)
T ss_dssp             HHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTT
T ss_pred             HHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhC
Confidence            2       22336799999999999999999999999999987644      567777777766554

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.97  E-value=6.7e-10  Score=103.17  Aligned_cols=121  Identities=16%  Similarity=0.158  Sum_probs=100.2

Q ss_pred             hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (347)
Q Consensus       210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~  289 (347)
                      ..+..+..+|..++..|+|++|+..|+++++..+              ........++.++|.+|..+|++++|+.++++
T Consensus        46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~--------------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  111 (411)
T 4a1s_A           46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGT--------------EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKH  111 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--------------SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcc--------------cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            4677788999999999999999999999999311              01223446899999999999999999999999


Q ss_pred             Hhhc------CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHH
Q 019054          290 AMRD------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKL------EPNDGGIKKELAVAKKK  344 (347)
Q Consensus       290 al~~------~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l------~P~~~~~~~~l~~~~~~  344 (347)
                      ++++      .|....+++.+|.+|..+|++++|+..|++++++      .|....+...++.+...
T Consensus       112 al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~  178 (411)
T 4a1s_A          112 DLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHA  178 (411)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Confidence            9988      5777899999999999999999999999999999      44444566666655443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.97  E-value=2.9e-09  Score=94.91  Aligned_cols=121  Identities=17%  Similarity=0.076  Sum_probs=91.1

Q ss_pred             HHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh-
Q 019054          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM-  291 (347)
Q Consensus       213 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al-  291 (347)
                      ..+..+|..+...|+|++|+.+|.+++......            ........++.++|.+|..+|+|++|+.++++|+ 
T Consensus       116 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~------------~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~  183 (293)
T 2qfc_A          116 QWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG------------IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILK  183 (293)
T ss_dssp             HHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS------------SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC------------CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            334556777777788888888888888732211            0112246689999999999999999999999999 


Q ss_pred             --hcCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHh
Q 019054          292 --RDGDDN----VKALFRQGQAYMALNDVDAAVESFEKALKLEPND------GGIKKELAVAKKKV  345 (347)
Q Consensus       292 --~~~p~~----~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~------~~~~~~l~~~~~~~  345 (347)
                        +..|++    ..+++++|.+|..+|+|++|+..|++++++.+..      ..+...++.+...+
T Consensus       184 ~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~  249 (293)
T 2qfc_A          184 QLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKL  249 (293)
T ss_dssp             HHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHT
T ss_pred             HHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc
Confidence              445553    3699999999999999999999999999986431      45666666665544

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.96  E-value=4.6e-09  Score=89.19  Aligned_cols=132  Identities=17%  Similarity=0.056  Sum_probs=89.9

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhh--------hccccCC--CChhhh-----hhHHhhHHHHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLD--------ICWEKEG--IDEGKS-----SSLRKTKSQIFTNSSACKL  275 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~--------~~~~~~~--~~~~~~-----~~~~~~~~~~~~nla~~~~  275 (347)
                      .+.++..+|..++..+++++|+.+|+++++.=.        .+.....  .+.++.     ....+..+.+++++|.+|.
T Consensus        17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~   96 (212)
T 3rjv_A           17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIRNPQQADYPQARQLAEKAVEAGSKSGEIVLARVLV   96 (212)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            355566666666666666666666666654211        0000000  011110     1234556778888999988


Q ss_pred             H----cCChHHHHHHHHHHhhcCC--CChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 019054          276 K----LGDLKGALLDTEFAMRDGD--DNVKALFRQGQAYMA----LNDVDAAVESFEKALKLEPNDGGIKKELAVAKK  343 (347)
Q Consensus       276 ~----l~~~~~A~~~~~~al~~~p--~~~~a~~~~g~~~~~----~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  343 (347)
                      .    .+++++|+.++++|++..+  .++.+++++|.+|..    .+++++|+.+|+++.++ |.++.+...|+.+..
T Consensus        97 ~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~  173 (212)
T 3rjv_A           97 NRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQ  173 (212)
T ss_dssp             CGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHH
T ss_pred             cCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence            7    8889999999999998887  358899999999988    88899999999999888 667777777777653

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.96  E-value=2.8e-09  Score=94.10  Aligned_cols=108  Identities=11%  Similarity=-0.018  Sum_probs=93.4

Q ss_pred             HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhh-HHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 019054          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKT-KSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (347)
Q Consensus       214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~nla~~~~~l~~~~~A~~~~~~al~  292 (347)
                      ..+..|..+++.++|++|+.+|++++..                 .++. ...+++++|.++..+|++++|+.+|++++.
T Consensus       137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~-----------------~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~  199 (282)
T 4f3v_A          137 VAWMKAVVYGAAERWTDVIDQVKSAGKW-----------------PDKFLAGAAGVAHGVAAANLALFTEAERRLTEAND  199 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTTGGGC-----------------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhcc-----------------CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence            6688888999999999999999877661                 1222 246899999999999999999999999996


Q ss_pred             cC--CC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 019054          293 DG--DD-NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELA  339 (347)
Q Consensus       293 ~~--p~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~  339 (347)
                      ..  |. ...+++++|.++..+|+.++|...|++++..+|+ ..+...|.
T Consensus       200 g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~  248 (282)
T 4f3v_A          200 SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK  248 (282)
T ss_dssp             STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred             CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence            54  65 6789999999999999999999999999999999 88877764

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.95  E-value=5.4e-10  Score=89.78  Aligned_cols=76  Identities=14%  Similarity=0.132  Sum_probs=67.5

Q ss_pred             hHHHHhhHHHHHHcCccccchhhH----------HHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHH
Q 019054          205 LSWWMNAVDSIKVFGNEHYKKQDY----------KMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACK  274 (347)
Q Consensus       205 ~~~~~~~a~~~~~~g~~~~~~g~y----------~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~  274 (347)
                      .+..++.+..+.+.|.++...+++          ++|+..|++||+                  ++|....+|+|+|.+|
T Consensus        29 i~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~------------------ldP~~~~A~~~LG~ay   90 (158)
T 1zu2_A           29 YKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL------------------IDPKKDEAVWCIGNAY   90 (158)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHH
T ss_pred             HHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH------------------hCcCcHHHHHHHHHHH
Confidence            333455678899999999998876          599999999999                  9999999999999999


Q ss_pred             HHcC-----------ChHHHHHHHHHHhhcCCCCh
Q 019054          275 LKLG-----------DLKGALLDTEFAMRDGDDNV  298 (347)
Q Consensus       275 ~~l~-----------~~~~A~~~~~~al~~~p~~~  298 (347)
                      ..+|           ++++|+.+|++|++++|++.
T Consensus        91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~  125 (158)
T 1zu2_A           91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT  125 (158)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence            9985           89999999999999999874

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.95  E-value=3.2e-09  Score=103.78  Aligned_cols=119  Identities=6%  Similarity=-0.088  Sum_probs=109.5

Q ss_pred             HhhHHHHHHcCccccchhh----------HHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcC
Q 019054          209 MNAVDSIKVFGNEHYKKQD----------YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG  278 (347)
Q Consensus       209 ~~~a~~~~~~g~~~~~~g~----------y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~  278 (347)
                      ++...++...+..+...++          |++|+..|.++++                  .+|....+|..++.+..+++
T Consensus        60 P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~------------------~~pK~y~aW~hR~w~l~~l~  121 (567)
T 1dce_A           60 PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR------------------VNPKSYGTWHHRCWLLSRLP  121 (567)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHTCS
T ss_pred             chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcc
Confidence            4446677888888888888          9999999999999                  99999999999999999999


Q ss_pred             --ChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054          279 --DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALN-DVDAAVESFEKALKLEPNDGGIKKELAVAKKKV  345 (347)
Q Consensus       279 --~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~-~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  345 (347)
                        ++++|+..|+++++++|.|..||..|+.++..++ .+++|++++.++++++|.|..++.....+...+
T Consensus       122 ~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l  191 (567)
T 1dce_A          122 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  191 (567)
T ss_dssp             SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence              7799999999999999999999999999999999 999999999999999999999999888876553

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.95  E-value=2.5e-09  Score=98.54  Aligned_cols=123  Identities=16%  Similarity=0.191  Sum_probs=96.6

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+..+..+|..++..|+|++|+..|++++++.+..            ...+....++.++|.++..+|++++|+.+++++
T Consensus       186 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  253 (406)
T 3sf4_A          186 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF------------GDKAAERRAYSNLGNAYIFLGEFETASEYYKKT  253 (406)
T ss_dssp             HHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc------------CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            34567889999999999999999999999955422            123344568899999999999999999999999


Q ss_pred             hhcCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHh
Q 019054          291 MRDGDDN------VKALFRQGQAYMALNDVDAAVESFEKALKLEPND------GGIKKELAVAKKKV  345 (347)
Q Consensus       291 l~~~p~~------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~------~~~~~~l~~~~~~~  345 (347)
                      +.+.+..      ..+++.+|.+|..+|++++|+..|++++++.+..      ..+...++.+....
T Consensus       254 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~  320 (406)
T 3sf4_A          254 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTAL  320 (406)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence            9877655      6788899999999999999999999999886543      34555555554443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.94  E-value=6e-09  Score=81.91  Aligned_cols=88  Identities=18%  Similarity=0.114  Sum_probs=81.0

Q ss_pred             HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 019054          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIK  335 (347)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~---~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~  335 (347)
                      ..+.....++.+|.+++..|+|++|+..++++++++|++   ..+++.+|.+|..++++++|+..|+++++++|.+..++
T Consensus        23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  102 (148)
T 2dba_A           23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL  102 (148)
T ss_dssp             TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred             cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence            445677889999999999999999999999999999998   89999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhc
Q 019054          336 KELAVAKKKVS  346 (347)
Q Consensus       336 ~~l~~~~~~~~  346 (347)
                      ..++.+...++
T Consensus       103 ~~~a~~~~~~~  113 (148)
T 2dba_A          103 YRRSQALEKLG  113 (148)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHcC
Confidence            88888776554

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.93  E-value=1.2e-08  Score=77.25  Aligned_cols=84  Identities=29%  Similarity=0.368  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (347)
Q Consensus       263 ~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  342 (347)
                      ...++.++|.++...+++++|+..+++++..+|.+..+++.+|.++...|++++|+..|+++++++|.+..+...++.+.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~   87 (125)
T 1na0_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999888888776


Q ss_pred             HHhc
Q 019054          343 KKVS  346 (347)
Q Consensus       343 ~~~~  346 (347)
                      ...+
T Consensus        88 ~~~~   91 (125)
T 1na0_A           88 YKQG   91 (125)
T ss_dssp             HHTT
T ss_pred             HHhc
Confidence            5543

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.92  E-value=1.2e-08  Score=91.58  Aligned_cols=99  Identities=14%  Similarity=0.112  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHH-------cCCh-------HHHHHHHHHHhh-c
Q 019054          229 KMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK-------LGDL-------KGALLDTEFAMR-D  293 (347)
Q Consensus       229 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-------l~~~-------~~A~~~~~~al~-~  293 (347)
                      +.|+..|++++.                  ..|..+.+|+++|..+..       +|++       ++|+..+++|++ +
T Consensus        33 ~~a~~~~~~al~------------------~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~   94 (308)
T 2ond_A           33 KRVMFAYEQCLL------------------VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL   94 (308)
T ss_dssp             HHHHHHHHHHHH------------------HHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHH------------------HcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh
Confidence            789999999999                  889999999999998874       5886       899999999999 7


Q ss_pred             CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHh
Q 019054          294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG-IKKELAVAKKKV  345 (347)
Q Consensus       294 ~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~-~~~~l~~~~~~~  345 (347)
                      +|++..+|..+|.++..+|++++|...|+++++++|.+.. ++..++.+..+.
T Consensus        95 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  147 (308)
T 2ond_A           95 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA  147 (308)
T ss_dssp             TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999998876 777777765543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.92  E-value=5e-09  Score=93.06  Aligned_cols=84  Identities=11%  Similarity=0.036  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (347)
Q Consensus       263 ~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  342 (347)
                      .+..+.++|.++++.|+|++|+..++++++++|+++.+++++|.+|..+|++++|+.+|+++++++|++..+...++.+.
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   82 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999998887


Q ss_pred             HHhc
Q 019054          343 KKVS  346 (347)
Q Consensus       343 ~~~~  346 (347)
                      ..++
T Consensus        83 ~~~g   86 (281)
T 2c2l_A           83 LEME   86 (281)
T ss_dssp             HHTT
T ss_pred             HHcC
Confidence            6654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.91  E-value=2.3e-09  Score=104.70  Aligned_cols=120  Identities=10%  Similarity=-0.046  Sum_probs=109.1

Q ss_pred             HHHhhHHHHHHcCccccchh--hHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcC-ChHHH
Q 019054          207 WWMNAVDSIKVFGNEHYKKQ--DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-DLKGA  283 (347)
Q Consensus       207 ~~~~~a~~~~~~g~~~~~~g--~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-~~~~A  283 (347)
                      ..++...++...+..+.+.+  +|++|++.+.++++                  .++.+..+|.+++.+..+++ .++++
T Consensus       102 ~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~------------------~d~~N~~aW~~R~~~l~~l~~~~~~e  163 (567)
T 1dce_A          102 VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLE------------------ADERNFHCWDYRRFVAAQAAVAPAEE  163 (567)
T ss_dssp             HCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTCCCHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHh------------------hccccccHHHHHHHHHHHcCCChHHH
Confidence            34455667888888888888  77999999999999                  99999999999999999999 99999


Q ss_pred             HHHHHHHhhcCCCChhHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054          284 LLDTEFAMRDGDDNVKALFRQGQAYMAL--------------NDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (347)
Q Consensus       284 ~~~~~~al~~~p~~~~a~~~~g~~~~~~--------------~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  344 (347)
                      +++++++|+.+|.+..||+.++.++..+              +.+++|++++.+|++++|++..++..++-+...
T Consensus       164 l~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~  238 (567)
T 1dce_A          164 LAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGR  238 (567)
T ss_dssp             HHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhc
Confidence            9999999999999999999999999986              568999999999999999999999998877654

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.91  E-value=5e-09  Score=96.54  Aligned_cols=122  Identities=20%  Similarity=0.236  Sum_probs=101.3

Q ss_pred             hHHHHHHcCccccchhh--------------------HHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQD--------------------YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNS  270 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~--------------------y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nl  270 (347)
                      .+..+..+|..++..|+                    |++|+..|.+++.+....            ...+....++.++
T Consensus       126 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~------------~~~~~~~~~~~~l  193 (406)
T 3sf4_A          126 EARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL------------GDRAAQGRAFGNL  193 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhc------------cCcHHHHHHHHHH
Confidence            35678899999999999                    999999999999854332            1256677899999


Q ss_pred             HHHHHHcCChHHHHHHHHHHhhcCCCCh------hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHH
Q 019054          271 SACKLKLGDLKGALLDTEFAMRDGDDNV------KALFRQGQAYMALNDVDAAVESFEKALKLEPND------GGIKKEL  338 (347)
Q Consensus       271 a~~~~~l~~~~~A~~~~~~al~~~p~~~------~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~------~~~~~~l  338 (347)
                      |.++..+|++++|+..+++++++.+...      .+++.+|.+|..+|++++|+..|++++++.|..      ..+...+
T Consensus       194 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  273 (406)
T 3sf4_A          194 GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSL  273 (406)
T ss_dssp             HHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHH
Confidence            9999999999999999999998876553      399999999999999999999999999998765      4455556


Q ss_pred             HHHHHH
Q 019054          339 AVAKKK  344 (347)
Q Consensus       339 ~~~~~~  344 (347)
                      +.+...
T Consensus       274 a~~~~~  279 (406)
T 3sf4_A          274 GNTYTL  279 (406)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.91  E-value=4.4e-09  Score=97.60  Aligned_cols=123  Identities=17%  Similarity=0.156  Sum_probs=95.0

Q ss_pred             hhHHHHHHcCccccchhh-----------------HHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHH
Q 019054          210 NAVDSIKVFGNEHYKKQD-----------------YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA  272 (347)
Q Consensus       210 ~~a~~~~~~g~~~~~~g~-----------------y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~  272 (347)
                      ..+..+..+|..+...|+                 |++|+.+|.+++++....            ...+....++.++|.
T Consensus       164 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~------------~~~~~~~~~~~~la~  231 (411)
T 4a1s_A          164 SEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDL------------GDRGAQGRACGNLGN  231 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHH------------TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHc------------CCHHHHHHHHHHHHH
Confidence            346678899999999999                 999999999998854322            123556678888999


Q ss_pred             HHHHcCChHHHHHHHHHHhhcCCCChh------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHH
Q 019054          273 CKLKLGDLKGALLDTEFAMRDGDDNVK------ALFRQGQAYMALNDVDAAVESFEKALKLEPND------GGIKKELAV  340 (347)
Q Consensus       273 ~~~~l~~~~~A~~~~~~al~~~p~~~~------a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~------~~~~~~l~~  340 (347)
                      ++..+|++++|+.++++++++.+....      +++.+|.+|..+|++++|+..|++++++.|..      ..+...++.
T Consensus       232 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~  311 (411)
T 4a1s_A          232 TYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGN  311 (411)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999999999999999887765433      88889999999999999999999998887743      344555555


Q ss_pred             HHHH
Q 019054          341 AKKK  344 (347)
Q Consensus       341 ~~~~  344 (347)
                      +...
T Consensus       312 ~~~~  315 (411)
T 4a1s_A          312 TYTL  315 (411)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5433

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.91  E-value=6.2e-09  Score=93.58  Aligned_cols=119  Identities=7%  Similarity=-0.072  Sum_probs=106.6

Q ss_pred             hhHHHHHHcCccc----cch---hhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChH-
Q 019054          210 NAVDSIKVFGNEH----YKK---QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLK-  281 (347)
Q Consensus       210 ~~a~~~~~~g~~~----~~~---g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~-  281 (347)
                      +....+...+..+    ...   +++++++..+.++++                  .+|.+..+|..++.+..+++.++ 
T Consensus       101 k~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~------------------~~pkny~aW~~R~~vl~~l~~~~~  162 (306)
T 3dra_A          101 KNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLS------------------SDPKNHHVWSYRKWLVDTFDLHND  162 (306)
T ss_dssp             TCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCTTC
T ss_pred             ccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHhcccCh
Confidence            3445556666666    444   789999999999999                  99999999999999999999999 


Q ss_pred             -HHHHHHHHHhhcCCCChhHHHHHHHHHHhcCC------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          282 -GALLDTEFAMRDGDDNVKALFRQGQAYMALND------VDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       282 -~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~------~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                       ++++.++++|+.+|.|..||..|+.++..+++      ++++++.++++++++|+|..++..+..+....+
T Consensus       163 ~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~  234 (306)
T 3dra_A          163 AKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFD  234 (306)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcC
Confidence             99999999999999999999999999999998      999999999999999999999999988876654

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.91  E-value=1.1e-08  Score=89.68  Aligned_cols=78  Identities=18%  Similarity=0.052  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHH----cCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHH
Q 019054          263 KSQIFTNSSACKLK----LGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMA----LNDVDAAVESFEKALKLEPNDGGI  334 (347)
Q Consensus       263 ~~~~~~nla~~~~~----l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~----~~~~~~A~~~~~~al~l~P~~~~~  334 (347)
                      ...++.++|.+|..    .+++++|+.+++++++.+  +..+++++|.+|..    .+++++|+..|++++++.  +..+
T Consensus       109 ~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a  184 (273)
T 1ouv_A          109 YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK--DSPG  184 (273)
T ss_dssp             CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred             CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHH
Confidence            45667777777777    777777777777777765  56677777777776    777777777777777663  4566


Q ss_pred             HHHHHHHHHH
Q 019054          335 KKELAVAKKK  344 (347)
Q Consensus       335 ~~~l~~~~~~  344 (347)
                      ...++.+...
T Consensus       185 ~~~lg~~~~~  194 (273)
T 1ouv_A          185 CFNAGNMYHH  194 (273)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHc
Confidence            6666655443

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.91  E-value=1.7e-09  Score=96.50  Aligned_cols=107  Identities=18%  Similarity=0.154  Sum_probs=91.3

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+..+...|..++..|+|++|+..|+++++..+              ........++.++|.++..+|++++|+..++++
T Consensus         4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~--------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   69 (338)
T 3ro2_A            4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGT--------------EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHD   69 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--------------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCc--------------ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            345678889999999999999999999999311              012234678999999999999999999999999


Q ss_pred             hhc------CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 019054          291 MRD------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND  331 (347)
Q Consensus       291 l~~------~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  331 (347)
                      +.+      .|....+++.+|.++..+|++++|+..+++++++.|..
T Consensus        70 l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  116 (338)
T 3ro2_A           70 LTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL  116 (338)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Confidence            977      45558899999999999999999999999999997753

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.90  E-value=7.5e-09  Score=79.24  Aligned_cols=84  Identities=17%  Similarity=0.107  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------HHHH
Q 019054          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND-------GGIK  335 (347)
Q Consensus       263 ~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-------~~~~  335 (347)
                      .+..++++|.++...|++++|+..+++++..+|.++.+++.+|.++..+|++++|+..|++++++.|.+       ..+.
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   82 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence            456789999999999999999999999999999999999999999999999999999999999999877       7777


Q ss_pred             HHHHHHHHHhc
Q 019054          336 KELAVAKKKVS  346 (347)
Q Consensus       336 ~~l~~~~~~~~  346 (347)
                      ..++.+...++
T Consensus        83 ~~la~~~~~~~   93 (131)
T 1elr_A           83 ARIGNSYFKEE   93 (131)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHhc
Confidence            77777765543

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.88  E-value=3.7e-09  Score=94.25  Aligned_cols=122  Identities=16%  Similarity=0.193  Sum_probs=98.3

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  291 (347)
                      +..+..+|..++..|++++|+..|++++++.+..            ...+....++.++|.++..+|++++|+..+++++
T Consensus       183 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  250 (338)
T 3ro2_A          183 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF------------GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL  250 (338)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH------------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc------------CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4567889999999999999999999999854321            1233445689999999999999999999999999


Q ss_pred             hcCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHh
Q 019054          292 RDGDDN------VKALFRQGQAYMALNDVDAAVESFEKALKLEPND------GGIKKELAVAKKKV  345 (347)
Q Consensus       292 ~~~p~~------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~------~~~~~~l~~~~~~~  345 (347)
                      .+.+..      ..+++.+|.++..+|++++|+..|++++++.|..      ..+...++.+....
T Consensus       251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~  316 (338)
T 3ro2_A          251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL  316 (338)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence            887655      7889999999999999999999999999987642      22455555554443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.88  E-value=1.4e-08  Score=74.39  Aligned_cols=83  Identities=16%  Similarity=0.053  Sum_probs=70.9

Q ss_pred             hhHHHHHHHHHHHHHHcCC---hHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH---H
Q 019054          261 KTKSQIFTNSSACKLKLGD---LKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG---I  334 (347)
Q Consensus       261 ~~~~~~~~nla~~~~~l~~---~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~---~  334 (347)
                      |.++.++..+|.+++..++   .++|...+++||+++|+++++++.+|.+++..|+|++|+..|+++++.+|.++.   +
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~~~i   82 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDRVTI   82 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCHHHH
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHH
Confidence            4567788999999987666   799999999999999999999999999999999999999999999999998543   4


Q ss_pred             HHHHHHHHH
Q 019054          335 KKELAVAKK  343 (347)
Q Consensus       335 ~~~l~~~~~  343 (347)
                      ...+..++.
T Consensus        83 ~~~I~~A~~   91 (93)
T 3bee_A           83 IESINKAKK   91 (93)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            444444443

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.88  E-value=1.7e-08  Score=75.62  Aligned_cols=82  Identities=21%  Similarity=0.104  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHhhcC-------CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 019054          264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDG-------DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKK  336 (347)
Q Consensus       264 ~~~~~nla~~~~~l~~~~~A~~~~~~al~~~-------p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~  336 (347)
                      +.-++.+|..+++.++|..|+.++++|++..       +....++..+|.++..+|++++|+..++++++++|+++.+..
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~   84 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence            4557899999999999999999999999763       345789999999999999999999999999999999999988


Q ss_pred             HHHHHHHHh
Q 019054          337 ELAVAKKKV  345 (347)
Q Consensus       337 ~l~~~~~~~  345 (347)
                      ++..+++.+
T Consensus        85 n~~~~~~~~   93 (104)
T 2v5f_A           85 NLKYFEYIM   93 (104)
T ss_dssp             HHHHHHHHH
T ss_pred             hHHHHHHHH
Confidence            888776654

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.88  E-value=5.7e-09  Score=98.41  Aligned_cols=123  Identities=11%  Similarity=0.075  Sum_probs=95.9

Q ss_pred             HHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 019054          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (347)
Q Consensus       213 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  292 (347)
                      ..+...-..+.++|+|++|+..|+++++......          ....+.....+.|+|.+|..+|+|++|+.+++++|.
T Consensus       288 ~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~l----------g~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~  357 (429)
T 3qwp_A          288 QESLKKIEELKAHWKWEQVLAMCQAIISSNSERL----------PDINIYQLKVLDCAMDACINLGLLEEALFYGTRTME  357 (429)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCC----------CTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcC----------CccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            3444444556678899999999999998433221          125677889999999999999999999999999995


Q ss_pred             c-----CCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCCHHHHH---HHHHHHHHh
Q 019054          293 D-----GDD---NVKALFRQGQAYMALNDVDAAVESFEKALKL-----EPNDGGIKK---ELAVAKKKV  345 (347)
Q Consensus       293 ~-----~p~---~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l-----~P~~~~~~~---~l~~~~~~~  345 (347)
                      +     .|+   -+..++++|.+|..+|++++|+..|++|+++     -|+++....   .|+.++..+
T Consensus       358 i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          358 PYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            5     233   3678999999999999999999999999987     467776554   455555544

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.87  E-value=1.7e-08  Score=85.64  Aligned_cols=111  Identities=10%  Similarity=-0.107  Sum_probs=95.8

Q ss_pred             hHHHHHHcCccccc----hhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHh--hHHHHHHHHHHHHHH----cCCh
Q 019054          211 AVDSIKVFGNEHYK----KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRK--TKSQIFTNSSACKLK----LGDL  280 (347)
Q Consensus       211 ~a~~~~~~g~~~~~----~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~nla~~~~~----l~~~  280 (347)
                      .+.++..+|..+..    .+++++|+.+|+++++                  ..+  ..+.+++++|.+|..    .+++
T Consensus        84 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~------------------~~~~~~~~~a~~~Lg~~y~~g~g~~~d~  145 (212)
T 3rjv_A           84 SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR------------------DSESDAAVDAQMLLGLIYASGVHGPEDD  145 (212)
T ss_dssp             CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS------------------STTSHHHHHHHHHHHHHHHHTSSSSCCH
T ss_pred             CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH------------------cCCCcchHHHHHHHHHHHHcCCCCCCCH
Confidence            45678888888887    8899999999999988                  444  458899999999999    8999


Q ss_pred             HHHHHHHHHHhhcCCCChhHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054          281 KGALLDTEFAMRDGDDNVKALFRQGQAYMAL-N-----DVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (347)
Q Consensus       281 ~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~-~-----~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  342 (347)
                      ++|+.++++|+++ |.++.+++++|.+|..- +     ++++|+.+|+++.+..  ++.+...|..+.
T Consensus       146 ~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g--~~~A~~~l~~l~  210 (212)
T 3rjv_A          146 VKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG--FDTGCEEFDRIS  210 (212)
T ss_dssp             HHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT--CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHhh
Confidence            9999999999999 77888999999999864 3     8999999999999984  677777777665

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.87  E-value=2.8e-09  Score=81.33  Aligned_cols=76  Identities=8%  Similarity=0.030  Sum_probs=70.7

Q ss_pred             HhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 019054          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (347)
Q Consensus       209 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~  288 (347)
                      ...+..+..+|..++..|+|++|+..|+++++                  ..|....++.++|.|+..+|++++|+..++
T Consensus        24 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~   85 (117)
T 3k9i_A           24 KDLAECYLGLGSTFRTLGEYRKAEAVLANGVK------------------QFPNHQALRVFYAMVLYNLGRYEQGVELLL   85 (117)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            45678899999999999999999999999999                  888889999999999999999999999999


Q ss_pred             HHhhcCCCChhHHH
Q 019054          289 FAMRDGDDNVKALF  302 (347)
Q Consensus       289 ~al~~~p~~~~a~~  302 (347)
                      +++...|+++....
T Consensus        86 ~al~~~p~~~~~~~   99 (117)
T 3k9i_A           86 KIIAETSDDETIQS   99 (117)
T ss_dssp             HHHHHHCCCHHHHH
T ss_pred             HHHHhCCCcHHHHH
Confidence            99999999987654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.86  E-value=8.6e-09  Score=84.55  Aligned_cols=121  Identities=7%  Similarity=-0.070  Sum_probs=95.9

Q ss_pred             HHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhh--h-------c--cccCCCC-----hhhhhhHHhhHHHHHHH
Q 019054          206 SWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLD--I-------C--WEKEGID-----EGKSSSLRKTKSQIFTN  269 (347)
Q Consensus       206 ~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~--~-------~--~~~~~~~-----~~~~~~~~~~~~~~~~n  269 (347)
                      ...++.+..+..+|..+...|++++|+..|+++++.-+  .       +  .......     -+......|....++++
T Consensus        34 ~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~  113 (176)
T 2r5s_A           34 DELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACE  113 (176)
T ss_dssp             HHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             HHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHH
Confidence            34455677889999999999999999999988876432  0       0  0000000     01112456778899999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHhhcCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 019054          270 SSACKLKLGDLKGALLDTEFAMRDGDDN--VKALFRQGQAYMALNDVDAAVESFEKALK  326 (347)
Q Consensus       270 la~~~~~l~~~~~A~~~~~~al~~~p~~--~~a~~~~g~~~~~~~~~~~A~~~~~~al~  326 (347)
                      +|.++..+|++++|+..++++++++|+.  ..+++.+|.++..+|++++|+..|++++.
T Consensus       114 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          114 LAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            9999999999999999999999999976  66999999999999999999999999875

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.85  E-value=4.2e-09  Score=97.51  Aligned_cols=93  Identities=13%  Similarity=0.094  Sum_probs=86.9

Q ss_pred             hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (347)
Q Consensus       210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~  289 (347)
                      ..+..+.++|..+++.|+|++|+.+|+++++                  .+|....+++++|.+|..++++++|+.++++
T Consensus       271 ~~~~~~~nla~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~  332 (370)
T 1ihg_A          271 VALSCVLNIGACKLKMSDWQGAVDSCLEALE------------------IDPSNTKALYRRAQGWQGLKEYDQALADLKK  332 (370)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------------------TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHHHHHHH------------------hCchhHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            3467788999999999999999999999999                  7888899999999999999999999999999


Q ss_pred             HhhcCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 019054          290 AMRDGDDNVKALFRQGQAYMALNDVDAAVES  320 (347)
Q Consensus       290 al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~  320 (347)
                      |++++|++..++..++.++..++++++|.+.
T Consensus       333 Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          333 AQEIAPEDKAIQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999888754

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.85  E-value=1.3e-08  Score=91.55  Aligned_cols=118  Identities=7%  Similarity=-0.155  Sum_probs=105.5

Q ss_pred             HhhHHHHHHcCccccchh--hHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHH----HHc---CC
Q 019054          209 MNAVDSIKVFGNEHYKKQ--DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACK----LKL---GD  279 (347)
Q Consensus       209 ~~~a~~~~~~g~~~~~~g--~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~----~~l---~~  279 (347)
                      ++...++...|..+...+  ++++|+..+.++|.                  ..|....+|+.++.+.    ..+   ++
T Consensus        64 P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~------------------~nPk~y~aW~~R~~iL~~~~~~l~~~~~  125 (306)
T 3dra_A           64 ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIAL------------------DNEKNYQIWNYRQLIIGQIMELNNNDFD  125 (306)
T ss_dssp             TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH------------------HCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred             cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHH------------------HCcccHHHHHHHHHHHHHHHHhccccCC
Confidence            334566777888888777  89999999999998                  8999999999999999    777   89


Q ss_pred             hHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHH--HHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054          280 LKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVD--AAVESFEKALKLEPNDGGIKKELAVAKKK  344 (347)
Q Consensus       280 ~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~--~A~~~~~~al~l~P~~~~~~~~l~~~~~~  344 (347)
                      +++++..++++++.+|.|..+|+.|+.++..++.++  ++++.+.++++.+|.|-.++.....+...
T Consensus       126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~  192 (306)
T 3dra_A          126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFS  192 (306)
T ss_dssp             THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999  99999999999999999998877666543

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.84  E-value=1.2e-08  Score=84.88  Aligned_cols=109  Identities=15%  Similarity=0.089  Sum_probs=90.7

Q ss_pred             hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (347)
Q Consensus       210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~  289 (347)
                      ..+..+..+|..+...|+|++|+..|.+++++.....           ........++.++|.++..+|++++|+.++++
T Consensus        64 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  132 (203)
T 3gw4_A           64 AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLP-----------EDPLAASANAYEVATVALHFGDLAGARQEYEK  132 (203)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC-----------CCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC-----------ccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            3567789999999999999999999999999654220           01225677899999999999999999999999


Q ss_pred             HhhcCCC--C----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 019054          290 AMRDGDD--N----VKALFRQGQAYMALNDVDAAVESFEKALKLEP  329 (347)
Q Consensus       290 al~~~p~--~----~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P  329 (347)
                      ++.+.+.  +    ..++..+|.++..+|++++|+..+++++++..
T Consensus       133 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  178 (203)
T 3gw4_A          133 SLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA  178 (203)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence            9976422  1    45678999999999999999999999999864

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.79  E-value=4.9e-09  Score=77.80  Aligned_cols=81  Identities=12%  Similarity=0.076  Sum_probs=69.0

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+..+..+|..++..|+|++|+..|+++++                  .+|....+|.++|.+|..+|++++|+..++++
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   67 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVE------------------TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQG   67 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            567789999999999999999999999999                  88899999999999999999999999999999


Q ss_pred             hhcCCCC--hhHHHHHHHHHH
Q 019054          291 MRDGDDN--VKALFRQGQAYM  309 (347)
Q Consensus       291 l~~~p~~--~~a~~~~g~~~~  309 (347)
                      +++.|.+  ..+...+..++.
T Consensus        68 l~l~~~~~~~~~~~~l~~~l~   88 (100)
T 3ma5_A           68 IEVAREEGTQKDLSELQDAKL   88 (100)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHH
T ss_pred             HhhhhcCCchhHHHHHHHHHH
Confidence            9987643  333333444333

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.78  E-value=7e-08  Score=87.39  Aligned_cols=116  Identities=6%  Similarity=-0.090  Sum_probs=101.7

Q ss_pred             HHHHHHcCccccchhh----------HHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCC--
Q 019054          212 VDSIKVFGNEHYKKQD----------YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD--  279 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~----------y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~--  279 (347)
                      ..++...+..+...++          +++++..+.+++.                  .+|.+..+|..++.+...+++  
T Consensus        64 ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~------------------~~PKny~aW~hR~wlL~~l~~~~  125 (331)
T 3dss_A           64 ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR------------------VNPKSYGTWHHRCWLLSRLPEPN  125 (331)
T ss_dssp             HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHCSSCC
T ss_pred             HHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHhccCccc
Confidence            4445555555554444          7899999999998                  899999999999999999994  


Q ss_pred             hHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054          280 LKGALLDTEFAMRDGDDNVKALFRQGQAYMALND-VDAAVESFEKALKLEPNDGGIKKELAVAKKKV  345 (347)
Q Consensus       280 ~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~-~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  345 (347)
                      +++++..|+++++++|.|..||..++.++..++. ++++++++.++++.+|.|..++.....+...+
T Consensus       126 ~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l  192 (331)
T 3dss_A          126 WARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  192 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence            8999999999999999999999999999999999 69999999999999999999998888776554

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.77  E-value=2.5e-08  Score=74.65  Aligned_cols=83  Identities=23%  Similarity=0.150  Sum_probs=70.2

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  291 (347)
                      +...+.+|..+++.++|..|+..|++|++....-.           ........++.++|.|+.++|++++|+..+++|+
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~-----------~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al   73 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGE-----------ISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL   73 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-----------CCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccC-----------CCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            56678999999999999999999999998432100           0123466889999999999999999999999999


Q ss_pred             hcCCCChhHHHHHH
Q 019054          292 RDGDDNVKALFRQG  305 (347)
Q Consensus       292 ~~~p~~~~a~~~~g  305 (347)
                      +++|++..++.+++
T Consensus        74 ~l~P~~~~~~~n~~   87 (104)
T 2v5f_A           74 ELDPEHQRANGNLK   87 (104)
T ss_dssp             HHCTTCHHHHHHHH
T ss_pred             hcCCCCHHHHhhHH
Confidence            99999999988876

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.74  E-value=4.5e-08  Score=88.64  Aligned_cols=115  Identities=10%  Similarity=-0.037  Sum_probs=102.4

Q ss_pred             HhhHHHHHHcCccccchh--hHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCC-hHHHHH
Q 019054          209 MNAVDSIKVFGNEHYKKQ--DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD-LKGALL  285 (347)
Q Consensus       209 ~~~a~~~~~~g~~~~~~g--~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~-~~~A~~  285 (347)
                      ++...++...+..+...+  ++++++..+.+++.                  .+|.+..+|..++.+...++. ++++++
T Consensus       105 PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~------------------~dprNy~AW~~R~~vl~~l~~~~~eel~  166 (331)
T 3dss_A          105 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLE------------------ADERNFHCWDYRRFVAAQAAVAPAEELA  166 (331)
T ss_dssp             TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence            344566677777777767  49999999999999                  999999999999999999999 699999


Q ss_pred             HHHHHhhcCCCChhHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 019054          286 DTEFAMRDGDDNVKALFRQGQAYMAL--------------NDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (347)
Q Consensus       286 ~~~~al~~~p~~~~a~~~~g~~~~~~--------------~~~~~A~~~~~~al~l~P~~~~~~~~l~~~  341 (347)
                      +++++|+.+|.|..||..++.++..+              +.++++++++.+++.++|+|..++..+.-+
T Consensus       167 ~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~l  236 (331)
T 3dss_A          167 FTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWL  236 (331)
T ss_dssp             HHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            99999999999999999999999988              569999999999999999999999866543

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.73  E-value=8.8e-08  Score=75.52  Aligned_cols=98  Identities=17%  Similarity=0.069  Sum_probs=86.1

Q ss_pred             cCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHH----cCChHHHHHHHHHHhhc
Q 019054          218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK----LGDLKGALLDTEFAMRD  293 (347)
Q Consensus       218 ~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----l~~~~~A~~~~~~al~~  293 (347)
                      +|..+...+.+++|+.+|++|.+                  .  ..+.+++++|.+|..    .+++++|+.++++|.+.
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~------------------~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~   90 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACE------------------L--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL   90 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHH------------------T--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHc------------------C--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC
Confidence            78888888888999999999987                  2  567899999999999    89999999999999987


Q ss_pred             CCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 019054          294 GDDNVKALFRQGQAYMA----LNDVDAAVESFEKALKLEPNDGGIKKELA  339 (347)
Q Consensus       294 ~p~~~~a~~~~g~~~~~----~~~~~~A~~~~~~al~l~P~~~~~~~~l~  339 (347)
                        .++.+++++|.+|..    .+++++|+.+|++|.++.  ++.+...|.
T Consensus        91 --g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~  136 (138)
T 1klx_A           91 --NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGILN  136 (138)
T ss_dssp             --TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred             --CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence              689999999999999    999999999999999984  566655544

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.72  E-value=2e-08  Score=89.40  Aligned_cols=122  Identities=9%  Similarity=-0.086  Sum_probs=95.4

Q ss_pred             hHHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhh-----------ccccCCCCh-----hhhhhHHhhHHHHHH
Q 019054          205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDI-----------CWEKEGIDE-----GKSSSLRKTKSQIFT  268 (347)
Q Consensus       205 ~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~-----------~~~~~~~~~-----~~~~~~~~~~~~~~~  268 (347)
                      +...++.+..+..+|..+...|++++|+..|+++++.-+.           .........     .......|.+..+++
T Consensus       144 l~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~  223 (287)
T 3qou_A          144 WQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALAT  223 (287)
T ss_dssp             HHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHH
Confidence            3344456777888888888888888888888877653220           000000110     111346788899999


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHhhcCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 019054          269 NSSACKLKLGDLKGALLDTEFAMRDGDDN--VKALFRQGQAYMALNDVDAAVESFEKALK  326 (347)
Q Consensus       269 nla~~~~~l~~~~~A~~~~~~al~~~p~~--~~a~~~~g~~~~~~~~~~~A~~~~~~al~  326 (347)
                      ++|.++..+|++++|+..+.++++.+|++  ..++.+++.++..+|+.++|+..|++++.
T Consensus       224 ~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          224 QLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            99999999999999999999999999998  89999999999999999999999999875

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.71  E-value=3.3e-08  Score=90.03  Aligned_cols=96  Identities=11%  Similarity=0.012  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcC-ChHHHHHHHHHHhhcCCCChhHHHHHHH
Q 019054          228 YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-DLKGALLDTEFAMRDGDDNVKALFRQGQ  306 (347)
Q Consensus       228 y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-~~~~A~~~~~~al~~~p~~~~a~~~~g~  306 (347)
                      .++|+..+.++|.                  ++|....+|+.++.+...++ .+++++..++++|..+|.+..+|+.|+.
T Consensus        70 se~AL~lt~~~L~------------------~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~w  131 (349)
T 3q7a_A           70 SERALELTEIIVR------------------MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLL  131 (349)
T ss_dssp             SHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH------------------hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            3456666666666                  56666666666666666666 3666666666666666666666666666


Q ss_pred             HHHhc-C-CHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 019054          307 AYMAL-N-DVDAAVESFEKALKLEPNDGGIKKELAVA  341 (347)
Q Consensus       307 ~~~~~-~-~~~~A~~~~~~al~l~P~~~~~~~~l~~~  341 (347)
                      ++..+ + +++++++.+.++++++|.|..++....-+
T Consensus       132 lL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wv  168 (349)
T 3q7a_A          132 LLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWL  168 (349)
T ss_dssp             HHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHH
T ss_pred             HHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            66665 5 56666666666666666666655544443

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.71  E-value=9.3e-08  Score=87.06  Aligned_cols=87  Identities=7%  Similarity=-0.090  Sum_probs=75.5

Q ss_pred             hHHHHHHcCccccchh-hHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHc-C-ChHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQ-DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL-G-DLKGALLDT  287 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g-~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l-~-~~~~A~~~~  287 (347)
                      ....+...+..+...+ .+++++..+.++|.                  .+|.+..+|..++.+...+ + ++++++..+
T Consensus        87 ~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~------------------~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~  148 (349)
T 3q7a_A           87 HYTVWQYRFSLLTSLNKSLEDELRLMNEFAV------------------QNLKSYQVWHHRLLLLDRISPQDPVSEIEYI  148 (349)
T ss_dssp             CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH------------------TTCCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH------------------hCCCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence            3555677788887778 59999999999998                  8889999999999999988 7 899999999


Q ss_pred             HHHhhcCCCChhHHHHHHHHHHhcCCHH
Q 019054          288 EFAMRDGDDNVKALFRQGQAYMALNDVD  315 (347)
Q Consensus       288 ~~al~~~p~~~~a~~~~g~~~~~~~~~~  315 (347)
                      +++|+.+|.|..||+.|+.++..++.++
T Consensus       149 ~k~L~~dpkNy~AW~~R~wvl~~l~~~~  176 (349)
T 3q7a_A          149 HGSLLPDPKNYHTWAYLHWLYSHFSTLG  176 (349)
T ss_dssp             HHHTSSCTTCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhcccc
Confidence            9999999999999999999988877655

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.70  E-value=1.3e-07  Score=72.45  Aligned_cols=103  Identities=13%  Similarity=0.148  Sum_probs=88.9

Q ss_pred             hhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHH---HHHHHHHHhhcC-C-CChhH
Q 019054          226 QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKG---ALLDTEFAMRDG-D-DNVKA  300 (347)
Q Consensus       226 g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~---A~~~~~~al~~~-p-~~~~a  300 (347)
                      .....+.+.|.+.+.                  ..+....+.+++|.|+.+..+...   +|..++..++.+ | ..-.+
T Consensus        15 ~~l~~~~~~y~~e~~------------------~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~   76 (126)
T 1nzn_A           15 EDLLKFEKKFQSEKA------------------AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDY   76 (126)
T ss_dssp             HHHHHHHHHHHHHHH------------------HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhc------------------cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHH
Confidence            455566677777766                  455677889999999999888777   999999999987 5 56899


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       301 ~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      +|.+|.+++.+|+|++|.+.++.+++.+|+|.++......+++++.
T Consensus        77 lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i~  122 (126)
T 1nzn_A           77 VFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK  122 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999888764

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.69  E-value=3.2e-08  Score=87.32  Aligned_cols=116  Identities=14%  Similarity=-0.014  Sum_probs=96.1

Q ss_pred             HHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 019054          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (347)
Q Consensus       213 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  292 (347)
                      ......+..+...|+|++|.+.|...+.                  ..|... +.+.+|.++++.++|++|+..+++++.
T Consensus       103 dl~LayA~~L~~~g~y~eA~~~l~~~~~------------------~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~  163 (282)
T 4f3v_A          103 AITMGFAACEAAQGNYADAMEALEAAPV------------------AGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGK  163 (282)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTSSCC------------------TTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGG
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHh------------------cCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhc
Confidence            3445567778889999999999998887                  667777 899999999999999999999998887


Q ss_pred             cCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CC-CHHHHHHHHHHHHHhcC
Q 019054          293 DGDDN--VKALFRQGQAYMALNDVDAAVESFEKALKLE--PN-DGGIKKELAVAKKKVSR  347 (347)
Q Consensus       293 ~~p~~--~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~--P~-~~~~~~~l~~~~~~~~~  347 (347)
                      ..+..  ..+++.+|.++..+|++++|+..|++++.-.  |. ..++...++.+...+++
T Consensus       164 ~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr  223 (282)
T 4f3v_A          164 WPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGN  223 (282)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTC
T ss_pred             cCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCC
Confidence            64222  4689999999999999999999999998654  55 55677777777776653

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.65  E-value=3.8e-08  Score=94.22  Aligned_cols=115  Identities=10%  Similarity=-0.031  Sum_probs=95.2

Q ss_pred             hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (347)
Q Consensus       210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~  289 (347)
                      ..+..+.++|..|..+|+|++|+.+|+++|.+.......          ..|..+..++|+|.+|..+|+|++|+..+++
T Consensus       349 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~----------~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~  418 (490)
T 3n71_A          349 YVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHH----------NNAQLGMAVMRAGLTNWHAGHIEVGHGMICK  418 (490)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCT----------TCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCC----------CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            457788999999999999999999999999976544222          5678889999999999999999999999999


Q ss_pred             Hhhc-----CCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q 019054          290 AMRD-----GDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI  334 (347)
Q Consensus       290 al~~-----~p~~---~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~  334 (347)
                      |+++     .|++   .+.+-.++.++..++.|++|...|+++.+-.-++..+
T Consensus       419 Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~~  471 (490)
T 3n71_A          419 AYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQPM  471 (490)
T ss_dssp             HHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred             HHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            9965     4554   5677889999999999999999999998755344443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.64  E-value=6.6e-08  Score=93.43  Aligned_cols=114  Identities=11%  Similarity=0.076  Sum_probs=71.3

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHH-HHHHHHHHHHHHcCChHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKS-QIFTNSSACKLKLGDLKGALLDTEF  289 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~nla~~~~~l~~~~~A~~~~~~  289 (347)
                      .+..+...|..+.+.|++++|...|+++++                  ..|... .+|.+++.++.++|++++|+..+++
T Consensus       320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  381 (530)
T 2ooe_A          320 NMLLYFAYADYEESRMKYEKVHSIYNRLLA------------------IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK  381 (530)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhC------------------ccccCchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            345566677777788899999999999988                  333322 3566666666666666666666666


Q ss_pred             HhhcCCCChhHHHHHHHH-HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054          290 AMRDGDDNVKALFRQGQA-YMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (347)
Q Consensus       290 al~~~p~~~~a~~~~g~~-~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  342 (347)
                      |++..|.+...+...+.. +...|++++|...|+++++.+|+++.++..+..+.
T Consensus       382 Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~  435 (530)
T 2ooe_A          382 AREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYL  435 (530)
T ss_dssp             HHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            666666555555544433 23456666666666666666666666555555443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.62  E-value=2.6e-08  Score=75.41  Aligned_cols=82  Identities=16%  Similarity=0.078  Sum_probs=69.6

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+..+..+|..++..|+|++|+..|+++++                  ..|....++.++|.++..+|++++|+..++++
T Consensus        18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a   79 (115)
T 2kat_A           18 NMLLRFTLGKTYAEHEQFDAALPHLRAALD------------------FDPTYSVAWKWLGKTLQGQGDRAGARQAWESG   79 (115)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHH------------------HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            466789999999999999999999999999                  78888999999999999999999999999999


Q ss_pred             hhcCCCC--hhHHHHHHHHHHh
Q 019054          291 MRDGDDN--VKALFRQGQAYMA  310 (347)
Q Consensus       291 l~~~p~~--~~a~~~~g~~~~~  310 (347)
                      ++++|..  ..++..+...+..
T Consensus        80 l~~~~~~~~~~~~~~l~~~l~~  101 (115)
T 2kat_A           80 LAAAQSRGDQQVVKELQVFLRR  101 (115)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHhccccccHHHHHHHHHHHHH
Confidence            9998854  3444444444333

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.62  E-value=2.4e-07  Score=84.93  Aligned_cols=108  Identities=14%  Similarity=0.023  Sum_probs=79.5

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+..+..+|..++..|+|++|+..|++++++.+..            ........++.++|.++..+|++++|+..++++
T Consensus        52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------------~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~a  119 (373)
T 1hz4_A           52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH------------DVWHYALWSLIQQSEILFAQGFLQTAWETQEKA  119 (373)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc------------CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            34567778888888999999999999998854321            011223455778888888888888888888888


Q ss_pred             hhcC--------CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 019054          291 MRDG--------DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN  330 (347)
Q Consensus       291 l~~~--------p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  330 (347)
                      +.+.        |....++..+|.++..+|++++|...+++++++.|.
T Consensus       120 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  167 (373)
T 1hz4_A          120 FQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS  167 (373)
T ss_dssp             HHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence            7664        334566777888888888888888888888888764

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.52  E-value=5e-07  Score=82.72  Aligned_cols=108  Identities=12%  Similarity=0.010  Sum_probs=89.5

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  291 (347)
                      +..+..+|..++..|+|++|+..|+++++........          ..+....++.++|.++..+|++++|+..+++++
T Consensus        93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~----------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  162 (373)
T 1hz4_A           93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLE----------QLPMHEFLVRIRAQLLWAWARLDEAEASARSGI  162 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCT----------TSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc----------cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            3446788999999999999999999999954321000          014566788999999999999999999999999


Q ss_pred             hcCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 019054          292 RDGDDN-----VKALFRQGQAYMALNDVDAAVESFEKALKLEP  329 (347)
Q Consensus       292 ~~~p~~-----~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P  329 (347)
                      .+.+..     ..++..+|.++...|++++|...+++++.+.+
T Consensus       163 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~  205 (373)
T 1hz4_A          163 EVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLG  205 (373)
T ss_dssp             HHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             HHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            887652     46889999999999999999999999998843

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.49  E-value=4e-07  Score=86.99  Aligned_cols=77  Identities=18%  Similarity=0.047  Sum_probs=64.6

Q ss_pred             hHHHHHHHHHHHHHH----cCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCC---
Q 019054          262 TKSQIFTNSSACKLK----LGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMA----LNDVDAAVESFEKALKLEPN---  330 (347)
Q Consensus       262 ~~~~~~~nla~~~~~----l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~----~~~~~~A~~~~~~al~l~P~---  330 (347)
                      ..+.+++++|.+|..    .+++++|+.++++|++..  ++.+++++|.+|..    .+++++|+..|++|++..|+   
T Consensus       361 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~  438 (490)
T 2xm6_A          361 GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFG  438 (490)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHH
T ss_pred             CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcC
Confidence            456789999999998    899999999999998864  68899999999998    89999999999999999854   


Q ss_pred             CHHHHHHHHH
Q 019054          331 DGGIKKELAV  340 (347)
Q Consensus       331 ~~~~~~~l~~  340 (347)
                      ++.+...++.
T Consensus       439 ~~~a~~~l~~  448 (490)
T 2xm6_A          439 TENRNITEKK  448 (490)
T ss_dssp             HHHHHHHHTT
T ss_pred             CHHHHHHHHh
Confidence            6666665543

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.48  E-value=1.5e-06  Score=83.93  Aligned_cols=98  Identities=14%  Similarity=0.087  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHH-------cCChH-------HHHHHHHHHhh-
Q 019054          228 YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK-------LGDLK-------GALLDTEFAMR-  292 (347)
Q Consensus       228 y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-------l~~~~-------~A~~~~~~al~-  292 (347)
                      ...|+..|++++.                  ..|....+|.++|..+..       +|+++       +|+..+++|++ 
T Consensus       254 ~~~a~~~y~~al~------------------~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~  315 (530)
T 2ooe_A          254 TKRVMFAYEQCLL------------------VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST  315 (530)
T ss_dssp             HHHHHHHHHHHHH------------------HHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence            3578899999999                  888999999999999986       79987       99999999997 


Q ss_pred             cCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHH
Q 019054          293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG-GIKKELAVAKK  343 (347)
Q Consensus       293 ~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~-~~~~~l~~~~~  343 (347)
                      +.|++..+|+.+|.++...|++++|...|++++++.|.++ .++..+..+..
T Consensus       316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  367 (530)
T 2ooe_A          316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR  367 (530)
T ss_dssp             TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHH
T ss_pred             hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999886 46666665543

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.42  E-value=2.8e-06  Score=66.75  Aligned_cols=94  Identities=21%  Similarity=0.074  Sum_probs=81.6

Q ss_pred             chhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHH
Q 019054          224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFR  303 (347)
Q Consensus       224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~  303 (347)
                      -.+++++|+.+|+++.+                  ..  ...+.  +|.+|...+..++|+.++++|.+.  .++.++++
T Consensus         7 ~~~d~~~A~~~~~~aa~------------------~g--~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~   62 (138)
T 1klx_A            7 VKKDLKKAIQYYVKACE------------------LN--EMFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRF   62 (138)
T ss_dssp             HHHHHHHHHHHHHHHHH------------------TT--CTTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred             CccCHHHHHHHHHHHHc------------------CC--CHhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHH
Confidence            35799999999999987                  32  23344  999999999999999999999987  68999999


Q ss_pred             HHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 019054          304 QGQAYMA----LNDVDAAVESFEKALKLEPNDGGIKKELAVAKK  343 (347)
Q Consensus       304 ~g~~~~~----~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  343 (347)
                      +|.+|..    .+++++|+.+|++|.+.  .++.+...|+.+..
T Consensus        63 Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~  104 (138)
T 1klx_A           63 LGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQY  104 (138)
T ss_dssp             HHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHH
Confidence            9999999    89999999999999987  67888888887754

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.41  E-value=1.3e-06  Score=82.94  Aligned_cols=105  Identities=14%  Similarity=0.032  Sum_probs=57.9

Q ss_pred             HHHHHcCccccchh---hHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHc----CChHHHHH
Q 019054          213 DSIKVFGNEHYKKQ---DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL----GDLKGALL  285 (347)
Q Consensus       213 ~~~~~~g~~~~~~g---~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l----~~~~~A~~  285 (347)
                      .++..+|..+.+.|   ++++|+.+|+++++                  ..+.....++++|.+|...    +++++|+.
T Consensus       177 ~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~------------------~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~  238 (452)
T 3e4b_A          177 ICYVELATVYQKKQQPEQQAELLKQMEAGVS------------------RGTVTAQRVDSVARVLGDATLGTPDEKTAQA  238 (452)
T ss_dssp             THHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------------TTCSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcccHHHHHHHHHHHHH------------------CCCHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence            36778888888888   99999999999987                  3333333334444444333    34444444


Q ss_pred             HHHHHhhcCCCChhHHHHHHHH-H--HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 019054          286 DTEFAMRDGDDNVKALFRQGQA-Y--MALNDVDAAVESFEKALKLEPNDGGIKKELAV  340 (347)
Q Consensus       286 ~~~~al~~~p~~~~a~~~~g~~-~--~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~  340 (347)
                      +++++.   |.++.+++++|.+ |  ...+++++|+.+|+++.+.  .++.+...|+.
T Consensus       239 ~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~  291 (452)
T 3e4b_A          239 LLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGK  291 (452)
T ss_dssp             HHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred             HHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHH
Confidence            444444   4444444444444 2  2344444444444444432  24444444433

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.40  E-value=1.9e-06  Score=78.53  Aligned_cols=119  Identities=11%  Similarity=0.068  Sum_probs=88.3

Q ss_pred             HHHHcCcccc---chhhHHHHHHHHHHHHHHhhhc--------------cccCCCChhh------------hhhHHhhHH
Q 019054          214 SIKVFGNEHY---KKQDYKMALRKYRKALRYLDIC--------------WEKEGIDEGK------------SSSLRKTKS  264 (347)
Q Consensus       214 ~~~~~g~~~~---~~g~y~~A~~~y~~al~~~~~~--------------~~~~~~~~~~------------~~~~~~~~~  264 (347)
                      .++-.|..++   ...++.+|+.+|++|+++-+..              ..........            .....+..+
T Consensus       198 dl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a  277 (372)
T 3ly7_A          198 TNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLS  277 (372)
T ss_dssp             HHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCH
Confidence            3344444443   3567899999999999865520              0011111100            113445666


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 019054          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG  333 (347)
Q Consensus       265 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~  333 (347)
                      .++.-+|.++...|++++|+..+++|+.++| ++.+|..+|.++...|++++|++.|++|+.++|..+.
T Consensus       278 ~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t  345 (372)
T 3ly7_A          278 IIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT  345 (372)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence            7777788888889999999999999999997 5788999999999999999999999999999998764

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.36  E-value=3.5e-06  Score=80.42  Aligned_cols=107  Identities=15%  Similarity=0.077  Sum_probs=64.6

Q ss_pred             hHHHHHHcCccccc----hhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHH----cCChHH
Q 019054          211 AVDSIKVFGNEHYK----KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK----LGDLKG  282 (347)
Q Consensus       211 ~a~~~~~~g~~~~~----~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----l~~~~~  282 (347)
                      .+.++..+|..++.    .+++++|+.+|+++++.                    ..+.+++++|.+|..    .+++++
T Consensus        38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--------------------~~~~a~~~Lg~~y~~g~g~~~~~~~   97 (490)
T 2xm6_A           38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--------------------GYTPAEYVLGLRYMNGEGVPQDYAQ   97 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHcCCCCCCCHHH
Confidence            46677778887777    78888888888888761                    234455555555555    555555


Q ss_pred             HHHHHHHHhhcCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 019054          283 ALLDTEFAMRDGDDNVKALFRQGQAYMA----LNDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (347)
Q Consensus       283 A~~~~~~al~~~p~~~~a~~~~g~~~~~----~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~  341 (347)
                      |+.++++|++.  .++.+++.+|.+|..    .+++++|+..|+++.+.  .++.+...|+.+
T Consensus        98 A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~  156 (490)
T 2xm6_A           98 AVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDA  156 (490)
T ss_dssp             HHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHH
Confidence            55555555543  345555555555555    55555555555555543  344444444443

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.35  E-value=1.8e-06  Score=68.56  Aligned_cols=79  Identities=10%  Similarity=0.010  Sum_probs=68.5

Q ss_pred             hHHHHHHcCccccchh---hHHHHHHHHHHHHHHhhhccccCCCChhhhhhHH-h-hHHHHHHHHHHHHHHcCChHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQ---DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLR-K-TKSQIFTNSSACKLKLGDLKGALL  285 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g---~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~nla~~~~~l~~~~~A~~  285 (347)
                      ..+..++.|..+.+.+   ++++++..++..++                  .+ | ...++++++|..|+++++|++|+.
T Consensus        31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~------------------~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~   92 (152)
T 1pc2_A           31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLP------------------KGSKEEQRDYVFYLAVGNYRLKEYEKALK   92 (152)
T ss_dssp             CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH------------------HSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh------------------cCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence            3567888888888866   88899999999998                  54 5 678999999999999999999999


Q ss_pred             HHHHHhhcCCCChhHHHHHHHH
Q 019054          286 DTEFAMRDGDDNVKALFRQGQA  307 (347)
Q Consensus       286 ~~~~al~~~p~~~~a~~~~g~~  307 (347)
                      +++++|+++|+|.+|...+-.+
T Consensus        93 y~~~lL~ieP~n~QA~~Lk~~i  114 (152)
T 1pc2_A           93 YVRGLLQTEPQNNQAKELERLI  114 (152)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCHHHHHHHHHH
Confidence            9999999999998887665443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.33  E-value=2.6e-06  Score=74.65  Aligned_cols=92  Identities=14%  Similarity=0.136  Sum_probs=83.9

Q ss_pred             cccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhh--HHHHHHHHHHHHHHc-----CChHHHHHHHHHHhhc
Q 019054          221 EHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKT--KSQIFTNSSACKLKL-----GDLKGALLDTEFAMRD  293 (347)
Q Consensus       221 ~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~nla~~~~~l-----~~~~~A~~~~~~al~~  293 (347)
                      .+-..+....|...+++|++                  ++|.  ...+|..+|..|.+.     |+.++|..++++||++
T Consensus       172 g~~Al~~l~~A~a~lerAle------------------LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L  233 (301)
T 3u64_A          172 GSALPDTVHAAVMMLERACD------------------LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY  233 (301)
T ss_dssp             TSCCHHHHHHHHHHHHHHHH------------------HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH
T ss_pred             ChHHHHhHHHHHHHHHHHHH------------------hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh
Confidence            35567788999999999999                  8888  667999999999996     9999999999999999


Q ss_pred             CCCC-hhHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCCC
Q 019054          294 GDDN-VKALFRQGQAYMAL-NDVDAAVESFEKALKLEPN  330 (347)
Q Consensus       294 ~p~~-~~a~~~~g~~~~~~-~~~~~A~~~~~~al~l~P~  330 (347)
                      +|+. ..+++..|..+... +++++|.+.+++++..+|.
T Consensus       234 nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          234 CSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred             CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence            9975 99999999999885 9999999999999999886

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.24  E-value=4.9e-06  Score=78.81  Aligned_cols=107  Identities=15%  Similarity=0.021  Sum_probs=78.7

Q ss_pred             hhHHHHHHcCcc-c--cchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcC-----ChH
Q 019054          210 NAVDSIKVFGNE-H--YKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-----DLK  281 (347)
Q Consensus       210 ~~a~~~~~~g~~-~--~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-----~~~  281 (347)
                      ..+.++..+|.. +  ...+++++|+.+|+++++                    ...+.+++++|.+|. .|     +++
T Consensus       246 g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~--------------------~g~~~A~~~Lg~~y~-~G~g~~~d~~  304 (452)
T 3e4b_A          246 GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA--------------------ADQPRAELLLGKLYY-EGKWVPADAK  304 (452)
T ss_dssp             GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHH-HCSSSCCCHH
T ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--------------------CCCHHHHHHHHHHHH-cCCCCCCCHH
Confidence            345667777776 3  467788888888888865                    235677888888887 44     888


Q ss_pred             HHHHHHHHHhhcCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054          282 GALLDTEFAMRDGDDNVKALFRQGQAYMA----LNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (347)
Q Consensus       282 ~A~~~~~~al~~~p~~~~a~~~~g~~~~~----~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  342 (347)
                      +|+.++++|+   +.++.+++++|.+|..    ..++++|+.+|+++.+.  .++.+...|+.+.
T Consensus       305 ~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y  364 (452)
T 3e4b_A          305 AAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLF  364 (452)
T ss_dssp             HHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHH
T ss_pred             HHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHH
Confidence            8888888888   7788888888888876    44888888888888764  4555666665553

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.23  E-value=1.7e-05  Score=61.70  Aligned_cols=85  Identities=12%  Similarity=0.082  Sum_probs=74.7

Q ss_pred             hHHHHHHHHHHHHHHcCCh---HHHHHHHHHHhhcCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 019054          262 TKSQIFTNSSACKLKLGDL---KGALLDTEFAMRDGDD-NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKE  337 (347)
Q Consensus       262 ~~~~~~~nla~~~~~l~~~---~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~  337 (347)
                      ......+++|.|+.+-.+.   .+++..++..++..|. .-.++|.+|..++.+|+|++|.++.+.+|+.+|+|.++...
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~L  116 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  116 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence            3456788888898887764   5789999999998884 57899999999999999999999999999999999999999


Q ss_pred             HHHHHHHhc
Q 019054          338 LAVAKKKVS  346 (347)
Q Consensus       338 l~~~~~~~~  346 (347)
                      ...+++++.
T Consensus       117 k~~Ie~~i~  125 (144)
T 1y8m_A          117 KSMVEDKIQ  125 (144)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            988888764

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.21  E-value=1.1e-05  Score=61.95  Aligned_cols=84  Identities=12%  Similarity=0.062  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHHHHcCC---hHHHHHHHHHHhhcCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 019054          263 KSQIFTNSSACKLKLGD---LKGALLDTEFAMRDGDD-NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (347)
Q Consensus       263 ~~~~~~nla~~~~~l~~---~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l  338 (347)
                      .....+++|.|+.+-.+   ..++|..++..++.+|. .-.++|.+|.+++.+|+|++|.++.+.+++.+|+|.++....
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk  118 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  118 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            44677888888888765   45789999999998884 578999999999999999999999999999999999999999


Q ss_pred             HHHHHHhc
Q 019054          339 AVAKKKVS  346 (347)
Q Consensus       339 ~~~~~~~~  346 (347)
                      ..+++++.
T Consensus       119 ~~Ie~ki~  126 (134)
T 3o48_A          119 SMVEDKIQ  126 (134)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988764

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.19  E-value=5e-06  Score=86.96  Aligned_cols=105  Identities=22%  Similarity=0.242  Sum_probs=88.0

Q ss_pred             HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (347)
Q Consensus       214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  293 (347)
                      .+...|..++..|+|++|+..|.+|-                          .|..+|.|+.++|++++|++.+.+|...
T Consensus      1197 d~~~iGd~le~eg~YeeA~~~Y~kA~--------------------------ny~rLA~tLvkLge~q~AIEaarKA~n~ 1250 (1630)
T 1xi4_A         1197 HIQQVGDRCYDEKMYDAAKLLYNNVS--------------------------NFGRLASTLVHLGEYQAAVDGARKANST 1250 (1630)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhhh--------------------------HHHHHHHHHHHhCCHHHHHHHHHHhCCH
Confidence            46679999999999999999998873                          4888999999999999999999988554


Q ss_pred             CC-------------------------CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054          294 GD-------------------------DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (347)
Q Consensus       294 ~p-------------------------~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  344 (347)
                      ++                         .++..+..++..|..+|.|++|+..+++++.++|.+..+..+|..+..+
T Consensus      1251 ~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaK 1326 (1630)
T 1xi4_A         1251 RTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 1326 (1630)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHh
Confidence            43                         1344566778889999999999999999999999999988888776543

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.18  E-value=4.4e-06  Score=78.07  Aligned_cols=103  Identities=22%  Similarity=0.252  Sum_probs=61.5

Q ss_pred             HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (347)
Q Consensus       214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  293 (347)
                      .+...|..++..|.|++|+.+|.++-                          .|.++|.|+.++|+|++|++.+.+|.  
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a~--------------------------n~~~LA~~L~~Lg~yq~AVea~~KA~--  175 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNVS--------------------------NFGRLASTLVHLGEYQAAVDGARKAN--  175 (449)
T ss_dssp             -------------CTTTHHHHHHHTT--------------------------CHHHHHHHHHTTTCHHHHHHHHHHHT--
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhh--------------------------hHHHHHHHHHHhccHHHHHHHHHHcC--
Confidence            45666666666666666666666441                          25555666666666666666655552  


Q ss_pred             CC---------------------------CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054          294 GD---------------------------DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (347)
Q Consensus       294 ~p---------------------------~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  344 (347)
                      +|                           .++.-+..+...|...|++++|+..+++++.+++.+..+..+|+.+..+
T Consensus       176 ~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~k  253 (449)
T 1b89_A          176 STRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK  253 (449)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred             CchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHh
Confidence            11                           1122233455789999999999999999999999999999998877543

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.16  E-value=1.1e-05  Score=74.96  Aligned_cols=120  Identities=11%  Similarity=0.013  Sum_probs=89.5

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccc---------------cCCCChhhh-------------hhHHhh
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE---------------KEGIDEGKS-------------SSLRKT  262 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~---------------~~~~~~~~~-------------~~~~~~  262 (347)
                      ...++..+|..+++.|+|++|++.|.+++.+......               ...-..+..             ......
T Consensus        54 ~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  133 (434)
T 4b4t_Q           54 QETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFL  133 (434)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSS
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHH
Confidence            4567889999999999999999999999886653210               000011110             011223


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHhhc------CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 019054          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRD------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN  330 (347)
Q Consensus       263 ~~~~~~nla~~~~~l~~~~~A~~~~~~al~~------~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  330 (347)
                      ...++.++|.+|..+|+|.+|+..+++++..      .+....++..+|.+|..+|+|++|...|++++.+.+.
T Consensus       134 ~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~  207 (434)
T 4b4t_Q          134 KHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANS  207 (434)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhc
Confidence            4567889999999999999999999998754      2333678999999999999999999999999999654

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.08  E-value=7.5e-06  Score=76.20  Aligned_cols=104  Identities=13%  Similarity=0.082  Sum_probs=81.9

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  291 (347)
                      +.....+|..++..|+|.+|+..+.+++......            ...+....++.+++.+|..+|+|++|...+++++
T Consensus       135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al  202 (434)
T 4b4t_Q          135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKL------------DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR  202 (434)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS------------SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhc------------ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            4456778888888888999988888888743211            2346678899999999999999999999999999


Q ss_pred             hcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019054          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL  327 (347)
Q Consensus       292 ~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l  327 (347)
                      .+.+.........+..+...|.+..+...|.+|...
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~  238 (434)
T 4b4t_Q          203 TAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSY  238 (434)
T ss_dssp             HHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHH
T ss_pred             HHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            887655555566778888888887777778777754

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.02  E-value=6.2e-06  Score=60.14  Aligned_cols=70  Identities=10%  Similarity=0.040  Sum_probs=60.8

Q ss_pred             hHHHHHHcCccccchhh---HHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQD---YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDT  287 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~---y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~  287 (347)
                      .+..+...|..++-.++   .++|...++++|+                  .+|.+..++..+|..+++.|+|++|+.++
T Consensus         5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~------------------~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w   66 (93)
T 3bee_A            5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ------------------LEPYNEAALSLIANDHFISFRFQEAIDTW   66 (93)
T ss_dssp             CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH------------------HCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            34556667777754444   7999999999999                  99999999999999999999999999999


Q ss_pred             HHHhhcCCCCh
Q 019054          288 EFAMRDGDDNV  298 (347)
Q Consensus       288 ~~al~~~p~~~  298 (347)
                      +++++.+|.++
T Consensus        67 ~~~l~~~p~~~   77 (93)
T 3bee_A           67 VLLLDSNDPNL   77 (93)
T ss_dssp             HHHHTCCCTTC
T ss_pred             HHHHhhCCCCc
Confidence            99999999853

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.02  E-value=1.7e-05  Score=70.88  Aligned_cols=99  Identities=13%  Similarity=0.022  Sum_probs=79.7

Q ss_pred             Cccccchh--hHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhh--HHHHHHHHHHHHHHcCChHHHHHHHHHHhhc-
Q 019054          219 GNEHYKKQ--DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKT--KSQIFTNSSACKLKLGDLKGALLDTEFAMRD-  293 (347)
Q Consensus       219 g~~~~~~g--~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~nla~~~~~l~~~~~A~~~~~~al~~-  293 (347)
                      |.+.+..|  ++++|+..|+++..                  ..|.  ...+++|   |++++|++++|...++.+++. 
T Consensus       183 a~v~l~~g~~~~q~A~~~f~El~~------------------~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~  241 (310)
T 3mv2_B          183 SYIKFATNKETATSNFYYYEELSQ------------------TFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDY  241 (310)
T ss_dssp             HHHHHHHTCSTTTHHHHHHHHHHT------------------TSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHH
T ss_pred             HHHHHHhCCccHHHHHHHHHHHHH------------------hCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhc
Confidence            43344445  89999999998766                  3332  3345555   899999999999999988876 


Q ss_pred             ---------CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 019054          294 ---------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAV  340 (347)
Q Consensus       294 ---------~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~  340 (347)
                               +|+++.++.++..+...+|+  +|.+.++++.+++|+++-+......
T Consensus       242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~~k  295 (310)
T 3mv2_B          242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQEI  295 (310)
T ss_dssp             HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred             ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHHHH
Confidence                     58899999999999999998  8999999999999999988765543

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.98  E-value=4.1e-05  Score=68.35  Aligned_cols=126  Identities=7%  Similarity=0.028  Sum_probs=83.3

Q ss_pred             HHHHcCccccchhhHHHHHHHHHHHHHHhh-------------hccccCCCChhhh-----hhHHhh----HHHHHHHHH
Q 019054          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLD-------------ICWEKEGIDEGKS-----SSLRKT----KSQIFTNSS  271 (347)
Q Consensus       214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~-------------~~~~~~~~~~~~~-----~~~~~~----~~~~~~nla  271 (347)
                      .+...|.++...|++++|++.+.++|..-+             -.....+.+....     ...+|.    .-.+..+++
T Consensus       102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~La  181 (310)
T 3mv2_B          102 ELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLA  181 (310)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHH
Confidence            345777788888888888888888744210             0011122211111     112331    224445555


Q ss_pred             HH--HHHcC--ChHHHHHHHHHHhhcCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh----------CCCCHHHH
Q 019054          272 AC--KLKLG--DLKGALLDTEFAMRDGDD--NVKALFRQGQAYMALNDVDAAVESFEKALKL----------EPNDGGIK  335 (347)
Q Consensus       272 ~~--~~~l~--~~~~A~~~~~~al~~~p~--~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l----------~P~~~~~~  335 (347)
                      ..  .+..|  ++++|...|+++....|+  +...+++   +++.+|++++|.+.+++++++          +|+|+...
T Consensus       182 ea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~L  258 (310)
T 3mv2_B          182 ESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFL  258 (310)
T ss_dssp             HHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHH
T ss_pred             HHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHH
Confidence            44  66666  999999999999988887  3445555   899999999999999988887          48899988


Q ss_pred             HHHHHHH
Q 019054          336 KELAVAK  342 (347)
Q Consensus       336 ~~l~~~~  342 (347)
                      .++..+-
T Consensus       259 aN~i~l~  265 (310)
T 3mv2_B          259 ANQITLA  265 (310)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7765443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.97  E-value=5.5e-05  Score=79.30  Aligned_cols=110  Identities=15%  Similarity=0.093  Sum_probs=85.5

Q ss_pred             HHcCccccchhhHHHHHHHHHHHHHHhhhcccc----CCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054          216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEK----EGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (347)
Q Consensus       216 ~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  291 (347)
                      ...|..+...|+|++|+..|+++-.....+...    ...+.............+|.++|.++...|++++|+..|.+| 
T Consensus      1053 ~eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A         1053 PDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence            446889999999999999999886543321111    111111111123456789999999999999999999999886 


Q ss_pred             hcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 019054          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN  330 (347)
Q Consensus       292 ~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  330 (347)
                          +++.+|++.|.++..+|+|++|++.|+.|.+..+.
T Consensus      1132 ----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e 1166 (1630)
T 1xi4_A         1132 ----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE 1166 (1630)
T ss_pred             ----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Confidence                88999999999999999999999999999998854

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.93  E-value=1.2e-05  Score=75.68  Aligned_cols=91  Identities=9%  Similarity=0.046  Sum_probs=73.8

Q ss_pred             hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (347)
Q Consensus       210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~  289 (347)
                      ..+..+.++|..+..+|+|++|+.+|+++|.........          ..|..+..++|+|.+|..+|++++|+..+++
T Consensus       327 ~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~----------~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~  396 (429)
T 3qwp_A          327 YQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPG----------SHPVRGVQVMKVGKLQLHQGMFPQAMKNLRL  396 (429)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCS----------SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCC----------CChHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            357788999999999999999999999999976654332          5678889999999999999999999999999


Q ss_pred             Hhhc-----CCCC---hhHHHHHHHHHHh
Q 019054          290 AMRD-----GDDN---VKALFRQGQAYMA  310 (347)
Q Consensus       290 al~~-----~p~~---~~a~~~~g~~~~~  310 (347)
                      |+++     .|++   .+.+.+++.+...
T Consensus       397 Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e  425 (429)
T 3qwp_A          397 AFDIMRVTHGREHSLIEDLILLLEECDAN  425 (429)
T ss_dssp             HHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence            9965     4555   3455556666544

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.92  E-value=1.3e-05  Score=75.44  Aligned_cols=74  Identities=9%  Similarity=-0.006  Sum_probs=64.6

Q ss_pred             hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (347)
Q Consensus       210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~  289 (347)
                      ..+..+.++|.+|..+|+|++|+.+|+++|.+.......          ..|..+..++|+|.+|..+|+|++|+..+++
T Consensus       338 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~----------~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~  407 (433)
T 3qww_A          338 YMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPV----------YSLNVASMWLKLGRLYMGLENKAAGEKALKK  407 (433)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCS----------SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCC----------CChHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            357778999999999999999999999999976654322          5678888999999999999999999999999


Q ss_pred             Hhhc
Q 019054          290 AMRD  293 (347)
Q Consensus       290 al~~  293 (347)
                      |+++
T Consensus       408 Al~i  411 (433)
T 3qww_A          408 AIAI  411 (433)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9965

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.87  E-value=9.3e-05  Score=64.90  Aligned_cols=114  Identities=16%  Similarity=0.054  Sum_probs=82.0

Q ss_pred             hHHHHHHHHHHHHHHhhhccccC---------CCC----hhhhhhHHhhHHHHHHHHHHHHHH---c--C------ChHH
Q 019054          227 DYKMALRKYRKALRYLDICWEKE---------GID----EGKSSSLRKTKSQIFTNSSACKLK---L--G------DLKG  282 (347)
Q Consensus       227 ~y~~A~~~y~~al~~~~~~~~~~---------~~~----~~~~~~~~~~~~~~~~nla~~~~~---l--~------~~~~  282 (347)
                      ++..|...|.++.++........         ..+    .+......+..+.+++-.|.....   +  +      ....
T Consensus       102 ~~~RA~~Ly~ra~~y~~raL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~  181 (301)
T 3u64_A          102 AYSRARKLYLRGARYALSSLETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHA  181 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHH
Confidence            56778888888887765432211         111    111234456667777777766644   2  2      2578


Q ss_pred             HHHHHHHHhhcCCC--ChhHHHHHHHHHHhc-----CCHHHHHHHHHHHHhhCCCC-HHHHHHHHH
Q 019054          283 ALLDTEFAMRDGDD--NVKALFRQGQAYMAL-----NDVDAAVESFEKALKLEPND-GGIKKELAV  340 (347)
Q Consensus       283 A~~~~~~al~~~p~--~~~a~~~~g~~~~~~-----~~~~~A~~~~~~al~l~P~~-~~~~~~l~~  340 (347)
                      |...+++|++++|+  +..+|..+|..|...     |+.++|.+.|++|++++|+. ..+....+.
T Consensus       182 A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~  247 (301)
T 3u64_A          182 AVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYAD  247 (301)
T ss_dssp             HHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHH
Confidence            89999999999999  677999999999996     99999999999999999974 665555444

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.82  E-value=7.6e-05  Score=59.63  Aligned_cols=118  Identities=9%  Similarity=0.026  Sum_probs=83.7

Q ss_pred             HHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC
Q 019054          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (347)
Q Consensus       215 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~  294 (347)
                      +++....++..+.|+.|+..+..++.+.+.-     .+    .-.......++..+|.+++..++|.+|...|++||.+.
T Consensus        23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~-----~~----~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~   93 (167)
T 3ffl_A           23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNN-----PE----LFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQK   93 (167)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-----TT----SSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCC-----cc----cccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence            4556667788899999999999988843210     00    00122445688999999999999999999999997432


Q ss_pred             ------C-------------------CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054          295 ------D-------------------DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (347)
Q Consensus       295 ------p-------------------~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  342 (347)
                            +                   ...+..|+++.||..++++++|+..++..-. .-..+.+...|+++.
T Consensus        94 k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A           94 KALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLANLY  165 (167)
T ss_dssp             HCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred             HHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHHHHh
Confidence                  1                   1136889999999999999999988764211 113556666666553

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.60  E-value=0.00022  Score=54.45  Aligned_cols=78  Identities=9%  Similarity=-0.030  Sum_probs=59.7

Q ss_pred             HHHHHHcCccccchhhH---HHHHHHHHHHHHHhhhccccCCCChhhhhhHH-h-hHHHHHHHHHHHHHHcCChHHHHHH
Q 019054          212 VDSIKVFGNEHYKKQDY---KMALRKYRKALRYLDICWEKEGIDEGKSSSLR-K-TKSQIFTNSSACKLKLGDLKGALLD  286 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y---~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~nla~~~~~l~~~~~A~~~  286 (347)
                      .+..++.|..+.+..+-   ..++..++..++                  .. | ..-.+++.+|..++++|+|.+|+.+
T Consensus        35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~------------------~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~   96 (126)
T 1nzn_A           35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP------------------KGSKEEQRDYVFYLAVGNYRLKEYEKALKY   96 (126)
T ss_dssp             HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT------------------TSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh------------------cCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            44556666666654443   447777777766                  22 3 5678899999999999999999999


Q ss_pred             HHHHhhcCCCChhHHHHHHHH
Q 019054          287 TEFAMRDGDDNVKALFRQGQA  307 (347)
Q Consensus       287 ~~~al~~~p~~~~a~~~~g~~  307 (347)
                      ++.+|+++|+|.+|.-.+..+
T Consensus        97 ~~~lL~~eP~n~QA~~Lk~~i  117 (126)
T 1nzn_A           97 VRGLLQTEPQNNQAKELERLI  117 (126)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHH
Confidence            999999999998887665443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.59  E-value=6.3e-05  Score=70.30  Aligned_cols=113  Identities=13%  Similarity=0.049  Sum_probs=42.2

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccc----------cCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChH
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE----------KEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLK  281 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~  281 (347)
                      ...+...+..+...|+|++|+.++..+++..+....          ..+..+.+ .-.......+|.++|.++...|+|+
T Consensus        61 ~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e-~f~~~pn~~a~~~IGd~~~~~g~ye  139 (449)
T 1b89_A           61 PSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELE-EFINGPNNAHIQQVGDRCYDEKMYD  139 (449)
T ss_dssp             ------------------------------------------------CHHHHT-TTTTCC----------------CTT
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHH-HHHcCCcHHHHHHHHHHHHHcCCHH
Confidence            345677777888899999999988888874321100          00001111 1111223358999999999999999


Q ss_pred             HHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 019054          282 GALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (347)
Q Consensus       282 ~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l  338 (347)
                      +|+.+|+++        ..|.++|.++..+|+|++|++.|+++     .++..++.+
T Consensus       140 eA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v  183 (449)
T 1b89_A          140 AAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEV  183 (449)
T ss_dssp             THHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHH
T ss_pred             HHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHH
Confidence            999999977        58899999999999999999999999     355555543

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.43  E-value=0.00084  Score=51.45  Aligned_cols=78  Identities=10%  Similarity=0.053  Sum_probs=59.8

Q ss_pred             HHHHHHcCccccc---hhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHh-hHHHHHHHHHHHHHHcCChHHHHHHH
Q 019054          212 VDSIKVFGNEHYK---KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRK-TKSQIFTNSSACKLKLGDLKGALLDT  287 (347)
Q Consensus       212 a~~~~~~g~~~~~---~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~nla~~~~~l~~~~~A~~~~  287 (347)
                      ++..++.|..+.+   ..+...++..++..++                  ..+ ..-.+++.+|..+.++|+|++|+.++
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~------------------~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~  101 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYK------------------EAESRRRECLYYLTIGCYKLGEYSMAKRYV  101 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH------------------HCGGGHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHh------------------cCcchhHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            3445555555543   3456677777777776                  334 56788999999999999999999999


Q ss_pred             HHHhhcCCCChhHHHHHHHH
Q 019054          288 EFAMRDGDDNVKALFRQGQA  307 (347)
Q Consensus       288 ~~al~~~p~~~~a~~~~g~~  307 (347)
                      +.+|+++|+|.+|.-.+..+
T Consensus       102 d~lL~~eP~N~QA~~Lk~~I  121 (134)
T 3o48_A          102 DTLFEHERNNKQVGALKSMV  121 (134)
T ss_dssp             HHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHHhhCCCCHHHHHHHHHH
Confidence            99999999998887665544

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=97.36  E-value=0.0019  Score=59.72  Aligned_cols=113  Identities=14%  Similarity=0.045  Sum_probs=88.6

Q ss_pred             HHHcCccccchhhHHHHHHHHHHHHHHhhhc--ccc-CCCC-hhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDIC--WEK-EGID-EGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       215 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~--~~~-~~~~-~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      +...|......++...|...+.+|+.++.--  ... ...+ ......+......+...++.++..+|++.+|+..+..+
T Consensus       118 l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~  197 (388)
T 2ff4_A          118 EKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEAL  197 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            3444444455678999999999999976421  111 1111 12234567777788889999999999999999999999


Q ss_pred             hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019054          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL  327 (347)
Q Consensus       291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l  327 (347)
                      +..+|-+..+|..+-.+|...|+..+|++.|+++.+.
T Consensus       198 ~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~  234 (388)
T 2ff4_A          198 TFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTT  234 (388)
T ss_dssp             HHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999987653

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.35  E-value=0.00027  Score=56.46  Aligned_cols=97  Identities=13%  Similarity=0.124  Sum_probs=66.8

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCC-------ChhhhhhHHhhHHHHHHHHHHHHHHcCChHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGI-------DEGKSSSLRKTKSQIFTNSSACKLKLGDLKGA  283 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A  283 (347)
                      .++.+...|+.+|..++|..|...|++||.+-+.+......       +.-......+...++.+.+|.||.+++++++|
T Consensus        62 ~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~A  141 (167)
T 3ffl_A           62 KYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDA  141 (167)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHH
Confidence            56788999999999999999999999999876643222110       00000001123457889999999999999999


Q ss_pred             HHHHHHHhhcCCCChhHHHHHHHHH
Q 019054          284 LLDTEFAMRDGDDNVKALFRQGQAY  308 (347)
Q Consensus       284 ~~~~~~al~~~p~~~~a~~~~g~~~  308 (347)
                      +..++.+-. .-..++....+|..|
T Consensus       142 i~~Le~Ip~-k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          142 IAILDGIPS-RQRTPKINMLLANLY  165 (167)
T ss_dssp             HHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred             HHHHhcCCc-hhcCHHHHHHHHHHh
Confidence            998755432 235678888787765

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.23  E-value=0.0015  Score=50.64  Aligned_cols=78  Identities=10%  Similarity=0.053  Sum_probs=57.8

Q ss_pred             HHHHHHcCccccc---hhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHh-hHHHHHHHHHHHHHHcCChHHHHHHH
Q 019054          212 VDSIKVFGNEHYK---KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRK-TKSQIFTNSSACKLKLGDLKGALLDT  287 (347)
Q Consensus       212 a~~~~~~g~~~~~---~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~nla~~~~~l~~~~~A~~~~  287 (347)
                      .+..++.|..+.+   ..+-.+++..++..++                  ..| ..-.+++.+|..+.++|+|.+|+.++
T Consensus        39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~------------------~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~  100 (144)
T 1y8m_A           39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYK------------------EAESRRRECLYYLTIGCYKLGEYSMAKRYV  100 (144)
T ss_dssp             HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH------------------HCCSTHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh------------------cCccchhHHHHHHHHHHHHhhhHHHHHHHH
Confidence            3445555555544   3345567777777666                  233 46678999999999999999999999


Q ss_pred             HHHhhcCCCChhHHHHHHHH
Q 019054          288 EFAMRDGDDNVKALFRQGQA  307 (347)
Q Consensus       288 ~~al~~~p~~~~a~~~~g~~  307 (347)
                      +.+|+++|+|.+|.-.+..+
T Consensus       101 d~lL~~eP~n~QA~~Lk~~I  120 (144)
T 1y8m_A          101 DTLFEHERNNKQVGALKSMV  120 (144)
T ss_dssp             HHHHHTCCCCHHHHHHHHHH
T ss_pred             HHHHhcCCCcHHHHHHHHHH
Confidence            99999999998876655443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.20  E-value=0.017  Score=45.15  Aligned_cols=111  Identities=10%  Similarity=-0.003  Sum_probs=88.0

Q ss_pred             HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (347)
Q Consensus       214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  293 (347)
                      .+-..|+-+.. +-.+.-++.|++|+..++-.         . .......+.+|.+.|.. ..+++.++|.+.|+.++.+
T Consensus        22 llE~~g~p~~d-~~l~rlrd~YerAia~~Pp~---------k-~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~   89 (161)
T 4h7y_A           22 KLEKNSVPLSD-ALLNKLIGRYSQAIEALPPD---------K-YGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN   89 (161)
T ss_dssp             HHHHHTCSCCH-HHHHHHHHHHHHHHHHSCGG---------G-GTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH
T ss_pred             HHHHcCCCchh-hHHHHHHHHHHHHHHcCCcc---------c-cccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH
Confidence            33333655544 55578889999999854321         1 23556677888888855 6789999999999999999


Q ss_pred             CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 019054          294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKK  336 (347)
Q Consensus       294 ~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~  336 (347)
                      ....++.|...|+--..+|+...|.+.+.+|+.+.|...+...
T Consensus        90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le  132 (161)
T 4h7y_A           90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLE  132 (161)
T ss_dssp             CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHH
Confidence            8888999999999999999999999999999999998776544

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.90  E-value=0.0062  Score=60.72  Aligned_cols=64  Identities=13%  Similarity=0.134  Sum_probs=55.4

Q ss_pred             hhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 019054          261 KTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKA  324 (347)
Q Consensus       261 ~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~a  324 (347)
                      +....++.--+.-++..|+|+-|+..+++|+...|+...+|++++.+|..+|+|+.|+-.+..+
T Consensus       334 ~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          334 NCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             CcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            3334455556777788999999999999999999999999999999999999999999776655

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=96.73  E-value=0.0055  Score=60.81  Aligned_cols=112  Identities=12%  Similarity=0.090  Sum_probs=73.9

Q ss_pred             HHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCC-hHHHHHHHHHHhhc
Q 019054          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD-LKGALLDTEFAMRD  293 (347)
Q Consensus       215 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~-~~~A~~~~~~al~~  293 (347)
                      +...++...+.+..+.|...|.+|+...                 .+....+|...|....+.++ ++.|...|+.+++.
T Consensus       437 Wi~y~~~erR~~~l~~AR~vf~~A~~~~-----------------~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~  499 (679)
T 4e6h_A          437 YCVYMNTMKRIQGLAASRKIFGKCRRLK-----------------KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY  499 (679)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHTG-----------------GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhc-----------------CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence            4444455556778889999999998721                 22234455555666555543 77888888888877


Q ss_pred             CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHH
Q 019054          294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN---DGGIKKELAVAKK  343 (347)
Q Consensus       294 ~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~---~~~~~~~l~~~~~  343 (347)
                      .|+++..+...+......|+.+.|...|++|++..|.   ...++......+.
T Consensus       500 ~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~  552 (679)
T 4e6h_A          500 FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFES  552 (679)
T ss_dssp             HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            7777777767777777777888888888888877763   3344444444443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=96.69  E-value=0.012  Score=58.47  Aligned_cols=127  Identities=9%  Similarity=0.009  Sum_probs=87.2

Q ss_pred             HcCccccchhhHHHHHHHHHHHHHHhhhccc----cCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 019054          217 VFGNEHYKKQDYKMALRKYRKALRYLDICWE----KEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (347)
Q Consensus       217 ~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  292 (347)
                      ..+....+.|+++.|...|++++..+.....    ..+...+...........+|...+....+.+..+.|...+.+|++
T Consensus       383 ~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~  462 (679)
T 4e6h_A          383 SLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR  462 (679)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3444445567777777778777764321100    000011111112223556788888888899999999999999998


Q ss_pred             c-CCCChhHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 019054          293 D-GDDNVKALFRQGQAYMALN-DVDAAVESFEKALKLEPNDGGIKKELAVAKK  343 (347)
Q Consensus       293 ~-~p~~~~a~~~~g~~~~~~~-~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  343 (347)
                      . .+...+.|...|..-...+ +++.|...|+++++..|+++.++......+.
T Consensus       463 ~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~  515 (679)
T 4e6h_A          463 LKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLI  515 (679)
T ss_dssp             TGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence            8 5556788887787777765 4999999999999999999998766555443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.48  E-value=0.0042  Score=56.55  Aligned_cols=67  Identities=7%  Similarity=-0.135  Sum_probs=57.1

Q ss_pred             HHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 019054          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (347)
Q Consensus       213 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  292 (347)
                      ..+..+|..++..|++++|+..+++|+.                  +++. ..+|..+|.++...|++++|++.+++|+.
T Consensus       278 ~~~~alal~~l~~gd~d~A~~~l~rAl~------------------Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~Alr  338 (372)
T 3ly7_A          278 IIYQIKAVSALVKGKTDESYQAINTGID------------------LEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFN  338 (372)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHH------------------HCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHh------------------cCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            3444566667778999999999999999                  6653 56788899999999999999999999999


Q ss_pred             cCCCCh
Q 019054          293 DGDDNV  298 (347)
Q Consensus       293 ~~p~~~  298 (347)
                      ++|...
T Consensus       339 L~P~~~  344 (372)
T 3ly7_A          339 LRPGAN  344 (372)
T ss_dssp             HSCSHH
T ss_pred             cCCCcC
Confidence            999764

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=95.98  E-value=0.047  Score=51.89  Aligned_cols=81  Identities=9%  Similarity=-0.088  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 019054          264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK  343 (347)
Q Consensus       264 ~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  343 (347)
                      ..++..+|........+..|..+|.+|+.+.|++..+|..+|.+....++.-+|+-.|-+++......+.+..+|..+.+
T Consensus       152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~  231 (497)
T 1ya0_A          152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence            45778899999999999999999999999999999999999999999999999999999999988778888888887765


Q ss_pred             H
Q 019054          344 K  344 (347)
Q Consensus       344 ~  344 (347)
                      +
T Consensus       232 ~  232 (497)
T 1ya0_A          232 K  232 (497)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=95.84  E-value=0.036  Score=50.98  Aligned_cols=100  Identities=17%  Similarity=0.009  Sum_probs=80.3

Q ss_pred             HcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--
Q 019054          217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG--  294 (347)
Q Consensus       217 ~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~--  294 (347)
                      .+|..|+..|+|.+|+..+.+.++.+...      +      .......++.....+|..++++.++...+++|....  
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~------d------d~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~a  171 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKL------D------DKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANA  171 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTS------S------CTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhcc------c------cchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc
Confidence            68899999999999999999999855432      1      135677889999999999999999999999986442  


Q ss_pred             --C-C--ChhHHHHHHHHHH-hcCCHHHHHHHHHHHHhhC
Q 019054          295 --D-D--NVKALFRQGQAYM-ALNDVDAAVESFEKALKLE  328 (347)
Q Consensus       295 --p-~--~~~a~~~~g~~~~-~~~~~~~A~~~~~~al~l~  328 (347)
                        + .  .+.....-|.++. ..++|..|..+|-++++-.
T Consensus       172 i~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f  211 (394)
T 3txn_A          172 IYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGF  211 (394)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence              2 1  2455666799999 8999999999999987543

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=95.03  E-value=0.13  Score=44.32  Aligned_cols=67  Identities=19%  Similarity=0.068  Sum_probs=59.9

Q ss_pred             HHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 019054          273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELA  339 (347)
Q Consensus       273 ~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~  339 (347)
                      -.++.++.++|+..+...++.+|.+++.-..+-+.+.-.|+|+.|..-++.+.+++|........+.
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr   72 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLR   72 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHH
Confidence            4567899999999999999999999999999999999999999999999999999998766554433

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.77  E-value=0.038  Score=51.66  Aligned_cols=101  Identities=12%  Similarity=-0.026  Sum_probs=79.3

Q ss_pred             HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (347)
Q Consensus       214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  293 (347)
                      .+..+|..+++.|++++|++.|.++..+..               .......++.+...+++..++|..+..++.+|-.+
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~---------------~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~  197 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAI---------------STGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSM  197 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHT---------------CCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcC---------------ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            356788999999999999999999887432               22356678889999999999999999999998654


Q ss_pred             CC--CC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 019054          294 GD--DN----VKALFRQGQAYMALNDVDAAVESFEKALKLEP  329 (347)
Q Consensus       294 ~p--~~----~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P  329 (347)
                      ..  .+    .+.....|.++...++|.+|...|..++.-..
T Consensus       198 ~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~  239 (429)
T 4b4t_R          198 IEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT  239 (429)
T ss_dssp             HTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred             hhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence            21  12    24455668888899999999999988876543

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=94.66  E-value=0.2  Score=47.52  Aligned_cols=126  Identities=9%  Similarity=-0.063  Sum_probs=85.9

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccc-------cCCCChhhhhh----------------HHhhHHHHHH
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE-------KEGIDEGKSSS----------------LRKTKSQIFT  268 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~-------~~~~~~~~~~~----------------~~~~~~~~~~  268 (347)
                      ...+...+..+...|+.+.|...|++|+.. +....       ...... ....                .......+|.
T Consensus       213 ~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~  290 (493)
T 2uy1_A          213 EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEA-VYGDLKRKYSMGEAESAEKVFSKELDLLRI  290 (493)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTH-HHHHHHHHTC----------CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhH-HHHHHHHHHHhhccchhhhhcccccHHHHH
Confidence            344566666777788999999999999986 43110       000000 0000                1122346677


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 019054          269 NSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALN-DVDAAVESFEKALKLEPNDGGIKKELAV  340 (347)
Q Consensus       269 nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~-~~~~A~~~~~~al~l~P~~~~~~~~l~~  340 (347)
                      ..+....+.+..+.|...+.+| ...+.....|...|..-...+ +.+.|...|+++++..|+++..+.....
T Consensus       291 ~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid  362 (493)
T 2uy1_A          291 NHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFL  362 (493)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            8888887888999999999999 443345667766676666666 6999999999999999998876544433

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=94.37  E-value=0.3  Score=38.99  Aligned_cols=73  Identities=11%  Similarity=0.010  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHh--hcC---------------CCChh-HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 019054          264 SQIFTNSSACKLKLGDLKGALLDTEFAM--RDG---------------DDNVK-ALFRQGQAYMALNDVDAAVESFEKAL  325 (347)
Q Consensus       264 ~~~~~nla~~~~~l~~~~~A~~~~~~al--~~~---------------p~~~~-a~~~~g~~~~~~~~~~~A~~~~~~al  325 (347)
                      +...+--+.||.++++|.+|+...+..|  .++               |.+-+ .+..+|....+.|+-+||+..|....
T Consensus        62 ~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf  141 (242)
T 3kae_A           62 CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSF  141 (242)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence            3445567899999999999999999998  232               33333 34557999999999999999999999


Q ss_pred             hhCCCCHHHHH
Q 019054          326 KLEPNDGGIKK  336 (347)
Q Consensus       326 ~l~P~~~~~~~  336 (347)
                      ..+|--+.+.+
T Consensus       142 ~~~~lf~~vEn  152 (242)
T 3kae_A          142 GKSFLFSPVEN  152 (242)
T ss_dssp             HHCCCHHHHHH
T ss_pred             CCccccchHHH
Confidence            99886555543

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=94.07  E-value=0.31  Score=41.96  Aligned_cols=92  Identities=12%  Similarity=0.036  Sum_probs=72.8

Q ss_pred             cccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhH
Q 019054          221 EHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA  300 (347)
Q Consensus       221 ~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a  300 (347)
                      .+++.|+.++|++.....++                  ..|.+......+-..+.-.|+|++|...++.+.+++|.....
T Consensus         6 ~ll~~g~L~~al~~~~~~VR------------------~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~   67 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIK------------------ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG   67 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHH------------------TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHH------------------hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence            46788999999999999999                  889999999999999999999999999999999999987432


Q ss_pred             --HHH---------------------------------HHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 019054          301 --LFR---------------------------------QGQAYMALNDVDAAVESFEKALKLEPN  330 (347)
Q Consensus       301 --~~~---------------------------------~g~~~~~~~~~~~A~~~~~~al~l~P~  330 (347)
                        .|+                                 .+......|+.++|.+.-.+|++..|.
T Consensus        68 a~~yr~lI~aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~  132 (273)
T 1zbp_A           68 ASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE  132 (273)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcc
Confidence              222                                 223344456777777777777776654

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=93.70  E-value=0.29  Score=46.49  Aligned_cols=106  Identities=8%  Similarity=-0.053  Sum_probs=75.0

Q ss_pred             HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcC-ChHHHHHHHHHHhh
Q 019054          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-DLKGALLDTEFAMR  292 (347)
Q Consensus       214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-~~~~A~~~~~~al~  292 (347)
                      .+...+....+.++.+.|...|.+| +                  ..+....+|...|......+ +++.|...++.+++
T Consensus       288 lw~~y~~~~~r~~~~~~AR~i~~~A-~------------------~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~  348 (493)
T 2uy1_A          288 LRINHLNYVLKKRGLELFRKLFIEL-G------------------NEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLL  348 (493)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHH-T------------------TSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh-h------------------CCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence            3444455555667788899999888 4                  11112345666676666666 69999999999999


Q ss_pred             cCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054          293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (347)
Q Consensus       293 ~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  342 (347)
                      ..|+++..+...+......|+.+.|...|+++    +....++......+
T Consensus       349 ~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE  394 (493)
T 2uy1_A          349 KHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYE  394 (493)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence            99998888777788788899999999888886    23444444444433

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=93.23  E-value=0.081  Score=52.77  Aligned_cols=59  Identities=19%  Similarity=0.259  Sum_probs=53.1

Q ss_pred             HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      -+...+..+..+|+|+-|+..-++|+.                  ..|.....|..||.||.++|+|+.|+-.++-+
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~------------------~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTE------------------LALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHh------------------cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            456678888899999999999999999                  88889999999999999999999999876665

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=92.59  E-value=0.65  Score=44.11  Aligned_cols=98  Identities=11%  Similarity=0.081  Sum_probs=76.9

Q ss_pred             HHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 019054          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (347)
Q Consensus       213 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  292 (347)
                      ..+..+-..+.+.|++++|.+.|.+..+.                ...| +...|..+-.+|.+.|+.++|...+++..+
T Consensus       106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~----------------g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~  168 (501)
T 4g26_A          106 ATFTNGARLAVAKDDPEMAFDMVKQMKAF----------------GIQP-RLRSYGPALFGFCRKGDADKAYEVDAHMVE  168 (501)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHT----------------TCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----------------CCCC-ccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            34555666788899999999999877651                0222 345677788889999999999999999876


Q ss_pred             cC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019054          293 DG-DDNVKALFRQGQAYMALNDVDAAVESFEKALKL  327 (347)
Q Consensus       293 ~~-p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l  327 (347)
                      .. ..+...|..+-.+|...|+.++|.+.|++..+.
T Consensus       169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~  204 (501)
T 4g26_A          169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL  204 (501)
T ss_dssp             TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence            53 236677888889999999999999999998664

>3kop_A Uncharacterized protein; protein with A cyclophilin-like fold, structural genomics, J center for structural genomics, JCSG; 1.90A {Arthrobacter SP}

Probab=92.46  E-value=0.71  Score=36.82  Aligned_cols=116  Identities=15%  Similarity=0.173  Sum_probs=67.8

Q ss_pred             EEEEEEECCeeee-eEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCce--EEeccCCCCCCCC
Q 019054            6 CFLDISIGVELEG-RIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFM--IQGGDISAGDGTG   82 (347)
Q Consensus         6 v~~~~~~~~~~~G-~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~--iq~G~~~~~~~~~   82 (347)
                      -|+.|++...  | .++.+|..+.||+||+.|.++-=              |.+-.+|-..-|.-  +--|++..     
T Consensus        22 r~i~itl~~~--g~~~~A~Lldd~APkTcaA~~~~LP--------------~~~~viHarwSGeeVy~~lp~f~~-----   80 (188)
T 3kop_A           22 RYINITLEKR--GVTCKALLLDDVAPRTSKAVWDALP--------------QSSQVFHGKYARNEIYNLVPAFAP-----   80 (188)
T ss_dssp             CEEEEEETTT--TEEEEEEECTTTSHHHHHHHHHHCC--------------EEEECEECSSSSSEEEEEEECCSS-----
T ss_pred             eEEEEEEecC--CeEEEEEEccccChHHHHHHHHhCC--------------CCcceEEEEEecceEEEECCcccc-----
Confidence            4778887533  4 47889999999999999999641              44445554444432  22333220     


Q ss_pred             CCcccCCCCCCCccccCCCCccEEEeeeC----------C--C------CCCCceEEEecCCC--------CCCCCCCce
Q 019054           83 GESIYGLKFEDENFELKHERKGMLSMANA----------G--P------NTNGSQFFITTTRT--------SHLDGKHVV  136 (347)
Q Consensus        83 ~~~~~~~~~~~e~~~~~~~~~g~~~~~~~----------~--~------~~~~sqF~i~~~~~--------~~l~~~~~v  136 (347)
                            ...+.||... +..+|-|.+-.-          |  +      .+....+.|..+..        .++-|  .+
T Consensus        81 ------~~~g~EN~T~-~P~pGDIl~f~f~p~~lG~~~yGy~~~~~~~~~~~~~dl~ifYG~~~~l~~~~~GwlpG--N~  151 (188)
T 3kop_A           81 ------KEPGAENTTV-TPIPGDVCYFTFTSNDLKTPSHGYEADSGTDEVQTIVDLAVFYGRNNLLLNGDTGWVPG--NV  151 (188)
T ss_dssp             ------SCCCSCSEES-SCCTTEEEEEEEEHHHHSSGGGCC--------CCEEEEEEEECSSSCCCEETTTEECCE--EE
T ss_pred             ------cCCCcCCCCC-CCCCCcEEEEecCCcccCCccccccccccccCCCcceEEEEEecccccccccccceecC--cE
Confidence                  1134566543 344677776311          1  1      11124566655543        24444  68


Q ss_pred             eeEEEeChHHHHHHh
Q 019054          137 FGRVIKGMGVVRSIE  151 (347)
Q Consensus       137 fG~v~~g~~vl~~I~  151 (347)
                      |++|++|+|-+.++-
T Consensus       152 F~TIveGle~la~~c  166 (188)
T 3kop_A          152 FATIVEGLDEMAAAC  166 (188)
T ss_dssp             EEEEEESHHHHHHHH
T ss_pred             EEEEecCHHHHHHHH
Confidence            999999998876553

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=91.81  E-value=0.32  Score=46.14  Aligned_cols=80  Identities=14%  Similarity=0.033  Sum_probs=69.7

Q ss_pred             HHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 019054          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (347)
Q Consensus       213 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  292 (347)
                      .-+..+|....-+..+..|..+|.+|+.                  ..|.....|+.+|.++...++.-+|+-+|.+++.
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~------------------~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~  214 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQ------------------LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA  214 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHH------------------hCCCCCchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence            4567788888778889999999999999                  8999999999999999999999999999999998


Q ss_pred             cCCCChhHHHHHHHHHHh
Q 019054          293 DGDDNVKALFRQGQAYMA  310 (347)
Q Consensus       293 ~~p~~~~a~~~~g~~~~~  310 (347)
                      .....+.|.-++...+..
T Consensus       215 ~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          215 VKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             SSBCCHHHHHHHHHHHHH
T ss_pred             cCCCChhHHHHHHHHHHH
Confidence            776677777777766654

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.70  E-value=1.4  Score=41.11  Aligned_cols=105  Identities=7%  Similarity=-0.080  Sum_probs=79.1

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+.....++..++..|+|.+|.........-....            ........++......|...++|.+|...++++
T Consensus       136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~------------~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki  203 (445)
T 4b4t_P          136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGS------------MEMSEKIQFILEQMELSILKGDYSQATVLSRKI  203 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSS------------SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc------------ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            45556778889999999999999988876511100            123456778888899999999999999999887


Q ss_pred             hh---cCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019054          291 MR---DGDDN----VKALFRQGQAYMALNDVDAAVESFEKALKL  327 (347)
Q Consensus       291 l~---~~p~~----~~a~~~~g~~~~~~~~~~~A~~~~~~al~l  327 (347)
                      ..   -.+..    ...+...|..+...++|.+|..+|..+++.
T Consensus       204 ~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          204 LKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            42   12222    345666799999999999999999999875

>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A

Probab=90.43  E-value=4.1  Score=35.93  Aligned_cols=119  Identities=14%  Similarity=0.065  Sum_probs=66.0

Q ss_pred             HHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHc--CCh--HHHHHHHHHH
Q 019054          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL--GDL--KGALLDTEFA  290 (347)
Q Consensus       215 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l--~~~--~~A~~~~~~a  290 (347)
                      ....|-.++..|+|++|+..|+..|..+.-.....+.+.++   .......+..-+-.+-+++  +..  +...+.++-|
T Consensus       117 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e---~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELA  193 (325)
T 3mv2_A          117 KMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKL---AHKILETAREYILGLSIELERRSLKEGNTVRMLELA  193 (325)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHH---HHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence            45578889999999999999999998766543332222222   2222222211111111111  110  1111122222


Q ss_pred             -----hhcCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 019054          291 -----MRDGDDN-VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKK  336 (347)
Q Consensus       291 -----l~~~p~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~  336 (347)
                           ..+.|.. .-++..--...++.++|..|...-++.+++.|..+.+.+
T Consensus       194 AYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~q  245 (325)
T 3mv2_A          194 AYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAEQ  245 (325)
T ss_dssp             HHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHHH
T ss_pred             HHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHH
Confidence                 2344433 234444444566789999999999999999997554433

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=90.38  E-value=4.7  Score=38.10  Aligned_cols=88  Identities=11%  Similarity=0.057  Sum_probs=68.7

Q ss_pred             cchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC-CCChhHH
Q 019054          223 YKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG-DDNVKAL  301 (347)
Q Consensus       223 ~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~-p~~~~a~  301 (347)
                      .+.+..+.|.+.|.+-.+.                ...| +...|..+-.+|.+.|++++|+..+++..+.. ..+...|
T Consensus        81 ~~~~~l~~A~~lf~~M~~~----------------G~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty  143 (501)
T 4g26_A           81 SPNPGLSRGFDIFKQMIVD----------------KVVP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSY  143 (501)
T ss_dssp             SCCHHHHHHHHHHHHHHHT----------------TCCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             hhcchHHHHHHHHHHHHHh----------------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccee
Confidence            3456778888888766541                0222 34568888899999999999999999987653 2367788


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019054          302 FRQGQAYMALNDVDAAVESFEKALKL  327 (347)
Q Consensus       302 ~~~g~~~~~~~~~~~A~~~~~~al~l  327 (347)
                      ..+-.+|...|+.++|.+.|++..+.
T Consensus       144 n~lI~~~~~~g~~~~A~~l~~~M~~~  169 (501)
T 4g26_A          144 GPALFGFCRKGDADKAYEVDAHMVES  169 (501)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            88889999999999999999998765

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.27  E-value=0.68  Score=43.84  Aligned_cols=71  Identities=15%  Similarity=0.067  Sum_probs=58.3

Q ss_pred             hHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--CC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 019054          262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD--DN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG  332 (347)
Q Consensus       262 ~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p--~~---~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  332 (347)
                      ..+.+++.+-..|+..+.|+.|....+++.-...  .+   ...+|..|.++...++|.+|.+++..|++..|.+.
T Consensus       229 ~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~  304 (523)
T 4b4t_S          229 TKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS  304 (523)
T ss_dssp             HHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred             hhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence            3456777888999999999999999999853221  12   45678889999999999999999999999998754

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=90.24  E-value=3.8  Score=37.35  Aligned_cols=81  Identities=16%  Similarity=0.054  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC--------C--------------hhHHHHHHHHHHhcCCHHHHHHHHH
Q 019054          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDD--------N--------------VKALFRQGQAYMALNDVDAAVESFE  322 (347)
Q Consensus       265 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~--------~--------------~~a~~~~g~~~~~~~~~~~A~~~~~  322 (347)
                      ..+...|......++.+.|+..+.+|+.+...        .              ..++..++.++...|++++|+..+.
T Consensus       116 ~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~  195 (388)
T 2ff4_A          116 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE  195 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            33444455555678999999999999977421        1              1355667888999999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHh
Q 019054          323 KALKLEPNDGGIKKELAVAKKKV  345 (347)
Q Consensus       323 ~al~l~P~~~~~~~~l~~~~~~~  345 (347)
                      +++..+|-+..++..|-.+....
T Consensus       196 ~~~~~~P~~E~~~~~lm~al~~~  218 (388)
T 2ff4_A          196 ALTFEHPYREPLWTQLITAYYLS  218 (388)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHTT
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHc
Confidence            99999999999888877766544

>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=90.09  E-value=4.2  Score=35.87  Aligned_cols=115  Identities=11%  Similarity=0.063  Sum_probs=65.6

Q ss_pred             HHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHc--CCh-----HHHHHHH
Q 019054          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL--GDL-----KGALLDT  287 (347)
Q Consensus       215 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l--~~~-----~~A~~~~  287 (347)
                      ....|-.++..|++++|+..|+..|..+.-....   +.++..........+..-+-.+-+++  ++.     +.....+
T Consensus       105 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~---~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~l  181 (320)
T 3mkr_B          105 RLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVD---NKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRIC  181 (320)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCC---SHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeec---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHH
Confidence            4567888899999999999999999866543222   22222223322222222221111222  221     2323333


Q ss_pred             HHH-----hhcCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 019054          288 EFA-----MRDGDDN-VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG  332 (347)
Q Consensus       288 ~~a-----l~~~p~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  332 (347)
                      +-|     ..+.|.+ .-++..--...++.++|..|...-++.+++.|..+
T Consensus       182 ELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~  232 (320)
T 3mkr_B          182 EMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPE  232 (320)
T ss_dssp             HHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHH
T ss_pred             HHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH
Confidence            333     2444444 23444444456678999999999999999988533

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=89.61  E-value=0.85  Score=31.74  Aligned_cols=41  Identities=15%  Similarity=0.120  Sum_probs=35.0

Q ss_pred             HHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhcc
Q 019054          206 SWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW  246 (347)
Q Consensus       206 ~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~  246 (347)
                      ....+.|..+...|...-+.|+|++|+.+|.+|++++..+.
T Consensus        13 ~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~al   53 (83)
T 2w2u_A           13 VMLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLV   53 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            34566788889999999999999999999999999876653

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=88.80  E-value=0.7  Score=32.15  Aligned_cols=39  Identities=15%  Similarity=0.176  Sum_probs=33.5

Q ss_pred             HHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhcc
Q 019054          208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW  246 (347)
Q Consensus       208 ~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~  246 (347)
                      ..+.|..+...|...-+.|+|++|+.+|..||+++..+.
T Consensus         7 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~l   45 (83)
T 2v6y_A            7 LEDMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQII   45 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            456788888889899999999999999999999876553

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=88.45  E-value=1  Score=44.89  Aligned_cols=26  Identities=15%  Similarity=-0.013  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          265 QIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       265 ~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      ..|.++|..+++.++++.|+..|.++
T Consensus       682 ~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          682 MKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            45666777777777777776666654

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=86.88  E-value=1.9  Score=34.68  Aligned_cols=29  Identities=10%  Similarity=0.014  Sum_probs=17.8

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHH
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALR  240 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~  240 (347)
                      ...++.+|......|+++-|.++|.++-.
T Consensus        34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D   62 (177)
T 3mkq_B           34 SITWERLIQEALAQGNASLAEMIYQTQHS   62 (177)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence            34466666666666666666666665533

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=86.30  E-value=0.85  Score=45.40  Aligned_cols=45  Identities=24%  Similarity=0.205  Sum_probs=24.5

Q ss_pred             HHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 019054          275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKA  324 (347)
Q Consensus       275 ~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~a  324 (347)
                      +.+|++++|.+.++     ..++...|.++|..+...++++.|+++|.++
T Consensus       663 l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          663 LKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            44566666655432     1134555566666666666666666665553

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=86.24  E-value=1.8  Score=32.20  Aligned_cols=40  Identities=18%  Similarity=0.239  Sum_probs=32.8

Q ss_pred             HHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccc
Q 019054          208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE  247 (347)
Q Consensus       208 ~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~  247 (347)
                      .++.|..+...|...-+.++|++|+.+|..|++++..+..
T Consensus        14 ~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~alk   53 (117)
T 2cpt_A           14 NLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVK   53 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHH
Confidence            4557777888888888899999999999999998766533

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=85.84  E-value=2.2  Score=34.26  Aligned_cols=49  Identities=18%  Similarity=0.183  Sum_probs=40.8

Q ss_pred             HHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019054          274 KLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL  327 (347)
Q Consensus       274 ~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l  327 (347)
                      .+++|+++.|.+.+++.     ++...|.++|.+-...|+++-|.++|+++-.+
T Consensus        15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~   63 (177)
T 3mkq_B           15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSF   63 (177)
T ss_dssp             HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH
T ss_pred             HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH
Confidence            45789999999988765     57888999999999999999999998876433

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=84.23  E-value=3.2  Score=40.43  Aligned_cols=55  Identities=13%  Similarity=0.073  Sum_probs=46.8

Q ss_pred             HHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 019054          272 ACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALK  326 (347)
Q Consensus       272 ~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~  326 (347)
                      ...++.++++.|..++...-.......+..|.+|.++..+|+.++|...|+++.+
T Consensus       293 r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          293 RMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             HHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            3455779999999999876664446688999999999999999999999999876

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=84.11  E-value=2.4  Score=30.05  Aligned_cols=39  Identities=18%  Similarity=0.081  Sum_probs=32.5

Q ss_pred             HHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhcc
Q 019054          208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW  246 (347)
Q Consensus       208 ~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~  246 (347)
                      ..+.|..+...|...-+.|+|++|+.+|..|++++..+.
T Consensus        11 ~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~al   49 (93)
T 1wfd_A           11 DSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVL   49 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence            344677788888888899999999999999999876553

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=83.73  E-value=4.3  Score=31.73  Aligned_cols=80  Identities=11%  Similarity=-0.029  Sum_probs=57.9

Q ss_pred             HHhhHHHHHHHHHHHHHHcCCh------HHHHHHHHHHhhcCCCC--------hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 019054          259 LRKTKSQIFTNSSACKLKLGDL------KGALLDTEFAMRDGDDN--------VKALFRQGQAYMALNDVDAAVESFEKA  324 (347)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~------~~A~~~~~~al~~~p~~--------~~a~~~~g~~~~~~~~~~~A~~~~~~a  324 (347)
                      +.|.+.+.|.+.....-+.|+.      ++-++.|++|+..-|..        +..|.+.|.- ..+++.++|.+.|+.|
T Consensus         8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a   86 (161)
T 4h7y_A            8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA   86 (161)
T ss_dssp             --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence            5677778888888888888998      89999999999766543        3455566644 6679999999999999


Q ss_pred             HhhCCCCHHHHHHHH
Q 019054          325 LKLEPNDGGIKKELA  339 (347)
Q Consensus       325 l~l~P~~~~~~~~l~  339 (347)
                      +.++..-.-++-..+
T Consensus        87 ~~~hKkFAKiwi~~A  101 (161)
T 4h7y_A           87 RANCKKFAFVHISFA  101 (161)
T ss_dssp             HHHCTTBHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHH
Confidence            988554434443333

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=82.24  E-value=14  Score=33.79  Aligned_cols=118  Identities=14%  Similarity=0.102  Sum_probs=78.9

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhh---------------ccccCCCChhh----------hhhH-Hhh--
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDI---------------CWEKEGIDEGK----------SSSL-RKT--  262 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~---------------~~~~~~~~~~~----------~~~~-~~~--  262 (347)
                      .-.+...+|..|.+.|++++-.+.......++..               .....+...+.          |... ...  
T Consensus        18 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~fl   97 (394)
T 3txn_A           18 KEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFL   97 (394)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4467889999999999999988887555444431               11111111111          1111 111  


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CCC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 019054          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRD----GDD--NVKALFRQGQAYMALNDVDAAVESFEKALKLE  328 (347)
Q Consensus       263 ~~~~~~nla~~~~~l~~~~~A~~~~~~al~~----~p~--~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~  328 (347)
                      ...+-.++|..|+..|+|.+|+..+.+.++-    +..  -.+.+..-.++|..++++..+.+.|.+|....
T Consensus        98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~  169 (394)
T 3txn_A           98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTA  169 (394)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence            2224458899999999999999988888753    211  14677778889999999999999999988763

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=81.59  E-value=2.5  Score=29.32  Aligned_cols=37  Identities=16%  Similarity=0.187  Sum_probs=30.5

Q ss_pred             HhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhc
Q 019054          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC  245 (347)
Q Consensus       209 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~  245 (347)
                      ++.|..+...|...-+.|+|++|+.+|..|++++...
T Consensus        10 l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a   46 (85)
T 2v6x_A           10 LTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLA   46 (85)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            4467777778878888999999999999999977654

>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.04  E-value=3.8  Score=30.21  Aligned_cols=80  Identities=10%  Similarity=-0.058  Sum_probs=59.1

Q ss_pred             hhHHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccC----CCChhhhhhHHhhHHHHHHHHHHHHHHcCC
Q 019054          204 ELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKE----GIDEGKSSSLRKTKSQIFTNSSACKLKLGD  279 (347)
Q Consensus       204 ~~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~nla~~~~~l~~  279 (347)
                      .+....+.|-.+.+.|-..-..|+-+.|+++|.++|..+......+    ....+.|.....+......|+..+-.+++.
T Consensus        14 ~ik~~h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM~~nL~~v~~RL~~   93 (116)
T 2dl1_A           14 IIREAYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMKETLQNVRTRLEI   93 (116)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566777777888777778999999999999999887644322    245667777788888888888888877765


Q ss_pred             hHHH
Q 019054          280 LKGA  283 (347)
Q Consensus       280 ~~~A  283 (347)
                      .+..
T Consensus        94 Le~~   97 (116)
T 2dl1_A           94 LEKG   97 (116)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            5443

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=80.90  E-value=2.1  Score=44.97  Aligned_cols=108  Identities=12%  Similarity=-0.030  Sum_probs=73.5

Q ss_pred             HHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhh------HHhhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 019054          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSS------LRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (347)
Q Consensus       215 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~nla~~~~~l~~~~~A~~~~~  288 (347)
                      -+-+|..++..|++++|..+|.+|..-+..-...... ......      ........|..+...+.+.+.++.+++.+.
T Consensus       845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~-~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~  923 (1139)
T 4fhn_B          845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAV-LREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL  923 (1139)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSS-HHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhh-hcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4778999999999999999999885422110000000 000000      111233567888889999999999999999


Q ss_pred             HHhhcCCCC-h----hHHHHHHHHHHhcCCHHHHHHHHHH
Q 019054          289 FAMRDGDDN-V----KALFRQGQAYMALNDVDAAVESFEK  323 (347)
Q Consensus       289 ~al~~~p~~-~----~a~~~~g~~~~~~~~~~~A~~~~~~  323 (347)
                      .||+..+.+ .    ..|.++=..+..+++|++|...+..
T Consensus       924 lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~  963 (1139)
T 4fhn_B          924 LADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV  963 (1139)
T ss_dssp             HHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred             HHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence            999865433 2    2577888899999999999776643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	347
d1a33a_	174	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (	3e-62
d1ihga2	195	b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain	2e-61
d2igva1	172	b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caeno	2e-58
d1qnga_	170	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium	8e-56
d2cfea1	162	b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s	6e-55
d2rmca_	182	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus	2e-50
d1qoia_	173	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Hom	3e-50
d2z6wa1	164	b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl c	2e-49
d1h0pa_	182	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabd	2e-49
d1xo7a_	166	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosom	4e-49
d1z81a1	186	b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plas	2e-48
d2r99a1	161	b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl	7e-47
d2c3ba1	171	b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Asper	8e-47
d1xwna1	166	b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isome	6e-43
d1zkca1	178	b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans iso	2e-42
d1w74a_	171	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	5e-39
d2ok3a1	159	b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B	1e-36
d2b71a1	169	b.62.1.1 (A:23-191) Cyclophilin-like protein PY006	9e-31
d2fu0a1	155	b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {	1e-30
d2a2na1	164	b.62.1.1 (A:483-646) Peptidylprolyl isomerase doma	3e-30
d1v9ta_	166	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	5e-26
d1lopa_	164	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	7e-26
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	3e-24
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	3e-16
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	3e-16
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	1e-15
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-12
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-07
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-07
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.001
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	1e-10
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	4e-10
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	2e-09
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	7e-08
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	3e-07
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	7e-06
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	7e-04
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	3e-07
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	1e-06
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	2e-05
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	1e-04
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	2e-05
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	3e-05
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	8e-04
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	4e-05
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	0.004
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	2e-04
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	5e-04

>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]} Length = 174

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

 Score =  194 bits (494), Expect = 3e-62
 Identities = 101/171 (59%), Positives = 124/171 (72%)

Query: 3   RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFH 62
           R R FLD++I   L GRI++E+YND+ P+T  NF  LCTG  G G  +G PLHYKG  FH
Sbjct: 3   RRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFH 62

Query: 63  RVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFI 122
           RVIK FMIQGGD + GDGTGGESIYG  F+DE F +KH+   ++SMAN GPNTNGSQFFI
Sbjct: 63  RVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFI 122

Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           TTT   HL+  HVVFG+V+ G  VV  IE++ T   + P+ADV I +CGE+
Sbjct: 123 TTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 173

>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]} Length = 195

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  193 bits (490), Expect = 2e-61
 Identities = 120/187 (64%), Positives = 142/187 (75%), Gaps = 3/187 (1%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
            + PR F D+ IG E  GRI++E++ D++PKTAENFRALCTGEKGIGP TG PLH+KG  
Sbjct: 12  PSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCP 71

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+IK FMIQGGD S  +GTGGESIYG KFEDENF  KH+++G+LSMANAG NTNGSQF
Sbjct: 72  FHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQF 131

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FITT  T HLDGKHVVFG+VIKGMGV + +E+V     + P     I +CGE+ EG D G
Sbjct: 132 FITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEV-KGEKPAKLCVIAECGELKEGDDWG 190

Query: 181 ISNFFND 187
           I  F  D
Sbjct: 191 I--FPKD 195

>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]} Length = 172

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

 Score =  185 bits (469), Expect = 2e-58
 Identities = 105/173 (60%), Positives = 134/173 (77%), Gaps = 2/173 (1%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M+R + F DI+IG +  GRI++E+Y+DV+PKTA NFRALCTGE GIG + G PLH+KG +
Sbjct: 1   MSRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKS-GKPLHFKGSK 59

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I  FMIQGGD + G+GTGGESIYG KF DENF+ KH   G+LSMANAGPNTNGSQF
Sbjct: 60  FHRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQF 119

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           F+ T +T  LDGKHVVFGRV++G+ VV+++E      +  P+ D  I DCG++
Sbjct: 120 FLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESN-GSQSGKPVKDCMIADCGQL 171

>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]} Length = 170

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]

 Score =  177 bits (450), Expect = 8e-56
 Identities = 99/171 (57%), Positives = 119/171 (69%), Gaps = 3/171 (1%)

Query: 3   RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFH 62
           R + F DISI     GRII E+++D+ P+T ENFRALCTGEK    + G  LHYK   FH
Sbjct: 3   RSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKI--GSRGKNLHYKNSIFH 60

Query: 63  RVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFI 122
           R+I  FM QGGDI+ G+G+GGESIYG  F DENF +KH++ G+LSMANAGPNTN SQFFI
Sbjct: 61  RIIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFI 120

Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           T      LDGKHVVFG+VI+GM VVR +E      +      V ITDCGE+
Sbjct: 121 TLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGA-KSGYVKRSVVITDCGEL 170

>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]} Length = 162

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]

 Score =  175 bits (444), Expect = 6e-55
 Identities = 99/168 (58%), Positives = 118/168 (70%), Gaps = 9/168 (5%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
              F DI+      G I  ++++DV+PKTA NFRALCTGEKG G        Y G  FHR
Sbjct: 2   SNVFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFG--------YAGSHFHR 53

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           VI  FM+QGGD +AG+GTGG+SIYG KF DENF+LKH + G+LSMANAGPNTNGSQFFIT
Sbjct: 54  VIPDFMLQGGDFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFIT 113

Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCG 171
           T  TS LDGKHVVFG VI GM VV++IE   +G +  P + + I  CG
Sbjct: 114 TVVTSWLDGKHVVFGEVIDGMNVVKAIEAEGSG-SGKPRSRIEIAKCG 160

>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]} Length = 182

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]

 Score =  164 bits (416), Expect = 2e-50
 Identities = 103/191 (53%), Positives = 125/191 (65%), Gaps = 16/191 (8%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
            + F D+ IG +  GRI++ ++ +V+PKT ENF AL TGEKG G        YKG  FHR
Sbjct: 8   DKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYG--------YKGSIFHR 59

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           VIK FMIQGGD +A DGTGG SIYG  F DENF+LKH   G +SMANAGP+TNGSQFFIT
Sbjct: 60  VIKDFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFIT 119

Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGISN 183
            T+ + LDGKHVVFG+V+ GM VV SIE   T  +D P+ D TI + G+I       +  
Sbjct: 120 LTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVNSGKID------VKT 173

Query: 184 FFNDGDSYPDW 194
            F      PDW
Sbjct: 174 PF--VVEVPDW 182

>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]} Length = 173

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]

 Score =  163 bits (413), Expect = 3e-50
 Identities = 98/170 (57%), Positives = 121/170 (71%), Gaps = 3/170 (1%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P  F D+SIG +  GR+ +E++ DV+PKTAENFR  CTGE       GVP+ YKG  FHR
Sbjct: 7   PVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFR---KDGVPIGYKGSTFHR 63

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           VIK FMIQGGD   GDGTG  SIY   F DENF+L+H   G+LSMAN+GP+TNG QFFIT
Sbjct: 64  VIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFIT 123

Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
            ++   LDGKHVVFG++I G+ V+R IE+V TG N+ P   V I+ CGE+
Sbjct: 124 CSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 173

>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  161 bits (408), Expect = 2e-49
 Identities = 95/170 (55%), Positives = 116/170 (68%), Gaps = 9/170 (5%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P  +LD+    +  GR+++E+  DV+PKTAENFRALCTGEKG          YKG  FHR
Sbjct: 3   PLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGF--------GYKGSTFHR 54

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           VI  FM Q GD +  +GTGG+SIYG +F DENF LKH   G+LSMANAGPNTNGSQFFI 
Sbjct: 55  VIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFIC 114

Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           T +T  LDGKHVVFG VI+GM VV+ IE   +  +      + ITDCG++
Sbjct: 115 TIKTDWLDGKHVVFGHVIEGMDVVKKIESFGS-KSGRTSKKIVITDCGQL 163

>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]} Length = 182

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]

 Score =  161 bits (408), Expect = 2e-49
 Identities = 91/171 (53%), Positives = 109/171 (63%), Gaps = 8/171 (4%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
            R + D+ IG +  GRI++ ++   +PKTA NF  L    KG G        Y G +FHR
Sbjct: 7   DRVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEG--------YPGSKFHR 58

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           VI  FMIQGGD + GDGTGG SIYG KF DENF+LKH   G LSMANAG +TNGSQFFIT
Sbjct: 59  VIADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFIT 118

Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIP 174
           T +T  LDG+HVVFG++++GM VVR IE       D P  DV I   G I 
Sbjct: 119 TVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHIA 169

>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

 Score =  160 bits (405), Expect = 4e-49
 Identities = 90/170 (52%), Positives = 120/170 (70%), Gaps = 9/170 (5%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
            + + DI+IG E  GR+++ ++ + +PKT ENF+ L +GE G G        YKG  FHR
Sbjct: 6   DKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFG--------YKGSIFHR 57

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           VI+ FMIQGGD +  DGTGG+SIYG +F+DEN ++KH   G +SMANAGPN+NGSQFF+T
Sbjct: 58  VIRNFMIQGGDFTNFDGTGGKSIYGTRFDDENLKIKHFV-GAVSMANAGPNSNGSQFFVT 116

Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           T  T  LDG+HVVFG+V++GM VV+ +E+  TG ND P   V I DCG +
Sbjct: 117 TAPTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCGVL 166

>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]} Length = 186

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]

 Score =  159 bits (402), Expect = 2e-48
 Identities = 83/173 (47%), Positives = 117/173 (67%), Gaps = 6/173 (3%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P  F+DI++G    G+   E++ +++PKT+ENFR  CTGE        +P+ YK   FHR
Sbjct: 17  PVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYK---VNNLPVGYKNTIFHR 73

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           VIK FMIQGGD    +G+G  SIYG KF+DENF++KH+++G+LSMAN+GPNTNG QFFIT
Sbjct: 74  VIKEFMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFIT 133

Query: 124 TTRTSHLDGKHVVFGRVIKG--MGVVRSIEHVMTGD-NDCPIADVTITDCGEI 173
           T +   LDGK+VVFGR+I    + +++ IE+V        P   + + +CGE+
Sbjct: 134 TKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL 186

>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  154 bits (390), Expect = 7e-47
 Identities = 92/169 (54%), Positives = 114/169 (67%), Gaps = 9/169 (5%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P+ ++DI IG +  GRI + + +DV+P TAENFR LCT EKG          +KG  FHR
Sbjct: 2   PQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGF--------GFKGSSFHR 53

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           +I  FM QGGD +  +GTGG+SIYG KF+DENF LKH   G+LSMAN+GPNTNGSQFF+T
Sbjct: 54  IIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLT 113

Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGE 172
             +T  LDGKHVVFG V +G+ V+R IE      +  P   V I DCGE
Sbjct: 114 CDKTDWLDGKHVVFGEVTEGLDVLRQIEAQ-GSKDGKPKQKVIIADCGE 161

>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]} Length = 171

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]

 Score =  154 bits (390), Expect = 8e-47
 Identities = 86/178 (48%), Positives = 107/178 (60%), Gaps = 16/178 (8%)

Query: 4   PRCFLDISIGVELE-----GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKG 58
            + F D+            GRI+  +++  +PKTA+NFR LC    G          Y+ 
Sbjct: 2   SQVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGE--------GYRE 53

Query: 59  VRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGS 118
             FHR+I  FMIQGGD + G+GTGG SIYG KF DENF  KH++KG+LSMANAGPNTNGS
Sbjct: 54  STFHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGS 113

Query: 119 QFFITTTRTSHLDGKHVVFGRVI--KGMGVVRSIEHVMTGD-NDCPIADVTITDCGEI 173
           QFFITT  TS LDGKHVVFG V   K   VV+ IE + +   +        I +CGE+
Sbjct: 114 QFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL 171

>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  144 bits (364), Expect = 6e-43
 Identities = 77/166 (46%), Positives = 101/166 (60%), Gaps = 18/166 (10%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P  +L+ S+G      I++E+Y    PKT +NF  L               +Y G +FHR
Sbjct: 12  PNVYLETSMG-----IIVLELYWKHAPKTCKNFAELARRG-----------YYNGTKFHR 55

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFI 122
           +IK FMIQGGD + G G GG SIYG +FEDE + +LK    G+L+MANAGP+TNGSQFF+
Sbjct: 56  IIKDFMIQGGDPT-GTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFV 114

Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTIT 168
           T   T  LDGKH +FGRV +G+G+V  +  V T   D P+ DV I 
Sbjct: 115 TLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKII 160

>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]} Length = 178

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  143 bits (362), Expect = 2e-42
 Identities = 69/171 (40%), Positives = 98/171 (57%), Gaps = 17/171 (9%)

Query: 14  VELE---GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMI 70
           V L    G + +E++ D+ PKT ENF  LC              +Y G  FHR I+ F+I
Sbjct: 3   VRLHTNKGDLNLELHCDLTPKTCENFIRLCKKH-----------YYDGTIFHRSIRNFVI 51

Query: 71  QGGDISAGDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSH 129
           QGGD + G GTGGES +G  F+DE    L H  +G+LSMAN+GPN+N SQFFIT    ++
Sbjct: 52  QGGDPT-GTGTGGESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAY 110

Query: 130 LDGKHVVFGRVIKGMGVVRSIEHVMTGD-NDCPIADVTITDCGEIPEGADD 179
           LD KH +FGRV+ G  V+ ++E+V +    D P  ++ I       +  ++
Sbjct: 111 LDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTVFVDPYEE 161

>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 171

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  134 bits (337), Expect = 5e-39
 Identities = 64/159 (40%), Positives = 84/159 (52%), Gaps = 9/159 (5%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTG----VPLHYKGVRFHRVIKGFMIQGG 73
           G I + ++ +  PKT  NF  L  G K               Y G  FHRVI+GFMIQGG
Sbjct: 13  GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGG 72

Query: 74  DISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGK 133
           D + G G GG        ++ + EL+ ++  +L+MANAGP TNGSQFFIT  +T HL+ +
Sbjct: 73  DPT-GTGRGGPGYK--FADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRR 129

Query: 134 HVVFGRVI--KGMGVVRSIEHVMTGDNDCPIADVTITDC 170
           H +FG VI  +   VV +I    T  ND P   V I   
Sbjct: 130 HTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIESI 168

>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (321), Expect = 1e-36
 Identities = 73/155 (47%), Positives = 93/155 (60%), Gaps = 14/155 (9%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G I +E++ +  PKT ENF ALC              +Y G  FHR IKGFM+Q GD   
Sbjct: 10  GDIKIEVFCERTPKTCENFLALCA-----------SNYYNGCIFHRNIKGFMVQTGD-PT 57

Query: 78  GDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           G G GG SI+G KFEDE +  LKH  +G++SMAN GPNTNGSQFFIT  +  HLD K+ V
Sbjct: 58  GTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTV 117

Query: 137 FGRVIKGMGVVRSIEHVMTGD-NDCPIADVTITDC 170
           FG+VI G+  +  +E +   +    P+ DV I D 
Sbjct: 118 FGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDI 152

>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]} Length = 169

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]

 Score =  112 bits (281), Expect = 9e-31
 Identities = 74/155 (47%), Positives = 84/155 (54%), Gaps = 13/155 (8%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G   VE+Y    PKT  NF  LC               Y    FHRVI  F+IQGGD   
Sbjct: 26  GDFEVELYWYHSPKTCLNFYTLCEMG-----------FYDNTIFHRVIPNFVIQGGD-PT 73

Query: 78  GDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           G G GG+SIYG  FEDE N ELKH   G+LSM+N GPNTN SQFFIT     HLDGKH +
Sbjct: 74  GTGKGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTI 133

Query: 137 FGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCG 171
           F RV K M  + +I  V T   + PI D+ I    
Sbjct: 134 FARVSKNMTCIENIASVQTTATNKPIFDLKILRTS 168

>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]} Length = 155

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]

 Score =  111 bits (279), Expect = 1e-30
 Identities = 70/154 (45%), Positives = 88/154 (57%), Gaps = 13/154 (8%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G I + ++     KT +NF                  +Y    FHRVIK FM+Q GD  +
Sbjct: 11  GDIHISLFYKECKKTVQNFSVHSING-----------YYNNCIFHRVIKHFMVQTGD-PS 58

Query: 78  GDGTGGESIYGLKFEDENFELKHERKG-MLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           GDGTGGESI+G +FEDE F+  +  K  M+SMAN GPNTNGSQFFITT     LD KH V
Sbjct: 59  GDGTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTV 118

Query: 137 FGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDC 170
           FG+V +G  +V  IE V T   D P+ D+ I + 
Sbjct: 119 FGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNI 152

>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (277), Expect = 3e-30
 Identities = 69/168 (41%), Positives = 86/168 (51%), Gaps = 12/168 (7%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P+   D +I     G I  +++    PKT ENF                  +Y G  FHR
Sbjct: 5   PKRVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHSRN-----------GYYNGHTFHR 53

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           +IKGFMIQ GD +     G     G   ++ +  L+H+R   LSMANAG NTNGSQFFIT
Sbjct: 54  IIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFIT 113

Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGD-NDCPIADVTITDC 170
              T  LD KH VFGRV KGM VV+ I +V      D P  DV+I + 
Sbjct: 114 VVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINI 161

>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

 Score =  100 bits (248), Expect = 5e-26
 Identities = 50/182 (27%), Positives = 69/182 (37%), Gaps = 29/182 (15%)

Query: 3   RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFH 62
            P   L  S G      I +E+     P + +NF                   Y    FH
Sbjct: 4   DPHVLLTTSAG-----NIELELDKQKAPVSVQNFVDYVNSG-----------FYNNTTFH 47

Query: 63  RVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMA-NAGPNTNGSQFF 121
           RVI GFMIQGG  +        +      ++E        +G ++MA  A  ++  SQFF
Sbjct: 48  RVIPGFMIQGGGFTEQMQQKKPNPP---IKNEADNGLRNTRGTIAMARTADKDSATSQFF 104

Query: 122 ITTTRTSHLD-----GKHVVFGRVIKGMGVVRSIEHVMTGD----NDCPIADVTITDCGE 172
           I     + LD       + VFG+V+KGM V   I  V T D     + P   V I     
Sbjct: 105 INVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSATV 164

Query: 173 IP 174
           +P
Sbjct: 165 LP 166

>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

 Score = 99.6 bits (247), Expect = 7e-26
 Identities = 45/165 (27%), Positives = 65/165 (39%), Gaps = 25/165 (15%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G I+++ ++D  P+T +NF   C               Y    FHRVI GFMIQ      
Sbjct: 9   GDIVIKTFDDKAPETVKNFLDYCR-----------EGFYNNTIFHRVINGFMIQ--GGGF 55

Query: 78  GDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT--------TRTSH 129
             G   ++       + N  LK+ R  +       P++  +QFFI          +  S 
Sbjct: 56  EPGMKQKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESL 115

Query: 130 LDGKHVVFGRVIKGMGVVRSIEHVMTGDN----DCPIADVTITDC 170
               + VF  V+ GM  V  I+ V TG +    D P  DV I   
Sbjct: 116 QGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVIIESV 160

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 95.1 bits (235), Expect = 3e-24
 Identities = 50/160 (31%), Positives = 84/160 (52%), Gaps = 2/160 (1%)

Query: 188 GDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE 247
           GDS+PD+P D D    ++   +   + +K  GN  +K Q+++MA++KY K LRY  +   
Sbjct: 3   GDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGS 60

Query: 248 KEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQA 307
           +   ++   + L+        N  ACKLK+ D +GA+     A+     N KAL+R+ Q 
Sbjct: 61  RAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQG 120

Query: 308 YMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVSR 347
           +  L + D A+   +KA ++ P D  I+ EL   K+K+  
Sbjct: 121 WQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA 160

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 72.7 bits (177), Expect = 3e-16
 Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 2/139 (1%)

Query: 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFT 268
           + +   IK  GNE +KK +   A+ KY++AL +     E +  D+      +  +     
Sbjct: 14  VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWD--DQILLDKKKNIEISCNL 71

Query: 269 NSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE 328
           N + C  K  D   A+      ++   +NVKAL++ G A M    ++ A E+  KA  L 
Sbjct: 72  NLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 131

Query: 329 PNDGGIKKELAVAKKKVSR 347
           PN+  I+    +   K+  
Sbjct: 132 PNNLDIRNSYELCVNKLKE 150

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 73.1 bits (178), Expect = 3e-16
 Identities = 36/148 (24%), Positives = 69/148 (46%), Gaps = 9/148 (6%)

Query: 206 SWWMN------AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSL 259
           SW M+          +K  G  ++K   Y  A+ +Y K + +      + G+ E +S + 
Sbjct: 3   SWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSW---LEMEYGLSEKESKAS 59

Query: 260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVE 319
                  F N + C LKL +   A+   + A+     N K L+R+G+A + +N+ ++A  
Sbjct: 60  ESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKG 119

Query: 320 SFEKALKLEPNDGGIKKELAVAKKKVSR 347
            FEK L++ P +   + ++ + +KK   
Sbjct: 120 DFEKVLEVNPQNKAARLQIFMCQKKAKE 147

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.6 bits (174), Expect = 1e-15
 Identities = 41/148 (27%), Positives = 72/148 (48%), Gaps = 9/148 (6%)

Query: 206 SWWMN------AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSL 259
           SW MN          +K  G  ++K+  YK AL +Y+K + +      +      ++   
Sbjct: 1   SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSFSNEEAQKA 57

Query: 260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVE 319
           +  +     N + C LKL     A+     A+    +N K L R+G+A++A+ND + A  
Sbjct: 58  QALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARA 117

Query: 320 SFEKALKLEPNDGGIKKELAVAKKKVSR 347
            F+K L+L PN+   K +LAV ++++ R
Sbjct: 118 DFQKVLQLYPNNKAAKTQLAVCQQRIRR 145

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.3 bits (155), Expect = 4e-12
 Identities = 18/142 (12%), Positives = 46/142 (32%), Gaps = 16/142 (11%)

Query: 219 GNEHYKKQDYKMALRKYRKALR---------------YLDICWEKEGIDEGKSSSLRKTK 263
              +Y++    +A+  YR+A+                  +     E  D   ++      
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT 303

Query: 264 SQIFTNSSA-CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFE 322
                N+ A  K + G+++ A+     A+    +   A             +  A+  ++
Sbjct: 304 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 363

Query: 323 KALKLEPNDGGIKKELAVAKKK 344
           +A+++ P        +    K+
Sbjct: 364 EAIRISPTFADAYSNMGNTLKE 385

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 2e-07
 Identities = 16/155 (10%), Positives = 41/155 (26%), Gaps = 1/155 (0%)

Query: 191 YPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDI-CWEKE 249
             +      ++                       +     A+        +         
Sbjct: 129 QYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLA 188

Query: 250 GIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYM 309
                K+ +L       + N      +      A+     A+    ++          Y 
Sbjct: 189 IHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYY 248

Query: 310 ALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344
               +D A++++ +A++L+P+       LA A K+
Sbjct: 249 EQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKE 283

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 2e-07
 Identities = 12/67 (17%), Positives = 18/67 (26%)

Query: 275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI 334
            + GD + A        R   DN   L      +     +D +      A+K  P     
Sbjct: 10  YQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEA 69

Query: 335 KKELAVA 341
              L   
Sbjct: 70  YSNLGNV 76

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 1e-04
 Identities = 11/91 (12%), Positives = 25/91 (27%), Gaps = 18/91 (19%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
            +  Y+  D++ A R   +  R                       + +    S+   +  
Sbjct: 6   AHREYQAGDFEAAERHCMQLWR------------------QEPDNTGVLLLLSSIHFQCR 47

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYM 309
            L  +   +  A++      +A    G  Y 
Sbjct: 48  RLDRSAHFSTLAIKQNPLLAEAYSNLGNVYK 78

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 22/121 (18%), Positives = 39/121 (32%), Gaps = 18/121 (14%)

Query: 193 DWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGID 252
                 D     L       DS+    N   ++ + + A+R YRKAL             
Sbjct: 286 SVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALE------------ 333

Query: 253 EGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALN 312
                 +    +   +N ++   + G L+ AL+  + A+R       A    G     + 
Sbjct: 334 ------VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

Query: 313 D 313
           D
Sbjct: 388 D 388

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 7/44 (15%), Positives = 15/44 (34%)

Query: 301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344
                       D +AA     +  + EP++ G+   L+    +
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQ 45

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.1 bits (139), Expect = 1e-10
 Identities = 31/136 (22%), Positives = 50/136 (36%), Gaps = 23/136 (16%)

Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA 272
             +K  GN  +  + Y  A   Y +A+                        +  +TN + 
Sbjct: 5   QELKEQGNRLFVGRKYPEAAACYGRAIT------------------RNPLVAVYYTNRAL 46

Query: 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND- 331
           C LK+   + AL D   A+     +VKA F  GQ  + +   D A+ + ++A  L     
Sbjct: 47  CYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 106

Query: 332 ----GGIKKELAVAKK 343
                 I   L +AKK
Sbjct: 107 LNFGDDIPSALRIAKK 122

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (130), Expect = 4e-10
 Identities = 22/133 (16%), Positives = 43/133 (32%), Gaps = 18/133 (13%)

Query: 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSS 271
           V+ +K  GN+     +   AL+ Y +A++                +     +        
Sbjct: 3   VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDG-- 60

Query: 272 ACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
                              +    D  K   R+  A   LN  + A  ++E+ LK E N+
Sbjct: 61  ----------------CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN 104

Query: 332 GGIKKELAVAKKK 344
             +K+ L   + +
Sbjct: 105 PQLKEGLQNMEAR 117

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (126), Expect = 2e-09
 Identities = 34/137 (24%), Positives = 50/137 (36%), Gaps = 26/137 (18%)

Query: 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKL 275
           K  GN+ YKK+D+  AL+ Y KA                    L  T     TN +A   
Sbjct: 8   KELGNDAYKKKDFDTALKHYDKA------------------KELDPTNMTYITNQAAVYF 49

Query: 276 KLGDLKGALLDTEFAMRDGDDNV-------KALFRQGQAYMALNDVDAAVESFEKALKLE 328
           + GD        E A+  G +N        KA  R G +Y        A+  + K+L   
Sbjct: 50  EKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH 109

Query: 329 PNDGGIKKELAVAKKKV 345
                + K+   A+K +
Sbjct: 110 RTP-DVLKKCQQAEKIL 125

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (114), Expect = 7e-08
 Identities = 16/128 (12%), Positives = 37/128 (28%), Gaps = 13/128 (10%)

Query: 220 NEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD 279
           NE    +D     +K++                   S S +   +     +         
Sbjct: 7   NELVSVEDLLKFEKKFQSEKAA-----------GSVSKSTQFEYAWCLVRT--RYNDDIR 53

Query: 280 LKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELA 339
               LL+        ++    +F        L + + A++     L+ EP +   K+   
Sbjct: 54  KGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELER 113

Query: 340 VAKKKVSR 347
           +  K + +
Sbjct: 114 LIDKAMKK 121

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (113), Expect = 3e-07
 Identities = 13/124 (10%), Positives = 32/124 (25%), Gaps = 2/124 (1%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G  +   ++   A + + +++                     K    I     A     G
Sbjct: 43  GCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG 102

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
           +    +      ++      + L+     Y    +   A E    A  ++      K + 
Sbjct: 103 NQ--LIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDK 160

Query: 339 AVAK 342
           A+  
Sbjct: 161 AMEC 164

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (103), Expect = 7e-06
 Identities = 20/116 (17%), Positives = 35/116 (30%), Gaps = 21/116 (18%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G     K+D+K AL  +                            S+I  N       L 
Sbjct: 12  GVLAADKKDWKGALDAFSAVQ---------------------DPHSRICFNIGCMYTILK 50

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI 334
           ++  A      ++        A F++G  Y      D A++  ++AL     +  I
Sbjct: 51  NMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLI 106

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 7e-04
 Identities = 26/166 (15%), Positives = 53/166 (31%), Gaps = 19/166 (11%)

Query: 184 FFNDGDSY---PDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
            FN G  Y    +           ++   +   +    G  +Y+ + Y +A++  ++AL 
Sbjct: 39  CFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALI 98

Query: 241 YLDICWEKEGIDEGKSSSLRKTKSQ-IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVK 299
            L      + ID        K  +  +  N +    K  + K A      A     +   
Sbjct: 99  QLR---GNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP-- 153

Query: 300 ALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV 345
                       + +D A+E   K    EP    + +     +++V
Sbjct: 154 ----------RHSKIDKAMECVWKQKLYEPVVIPVGRLFRPNERQV 189

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 3e-07
 Identities = 29/135 (21%), Positives = 55/135 (40%), Gaps = 18/135 (13%)

Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA 272
           + +K   N+++K +DY+ A++ Y +A+                           + N S 
Sbjct: 11  EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAI------------------YYGNRSL 52

Query: 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG 332
             L+      AL D   A+      +K  +R+  + MAL    AA+  +E  +K++P+D 
Sbjct: 53  AYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK 112

Query: 333 GIKKELAVAKKKVSR 347
             K +     K V +
Sbjct: 113 DAKMKYQECNKIVKQ 127

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.7 bits (112), Expect = 1e-06
 Identities = 13/145 (8%), Positives = 36/145 (24%), Gaps = 5/145 (3%)

Query: 200 QTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEG----- 254
           +  +  S W      +     +       ++      K L  +   +  +  D+      
Sbjct: 173 RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYH 232

Query: 255 KSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDV 314
           +    R         S      L     +  + +    +    +  +    +A   L   
Sbjct: 233 RWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYE 292

Query: 315 DAAVESFEKALKLEPNDGGIKKELA 339
              ++ F     ++P       +L 
Sbjct: 293 KETLQYFSTLKAVDPMRAAYLDDLR 317

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 20/173 (11%), Positives = 45/173 (26%), Gaps = 20/173 (11%)

Query: 191 YPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW---- 246
            P +   +                 K           +      +  A+R          
Sbjct: 117 TPAYAHLVTPAEEGAGGAGL--GPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV 174

Query: 247 --------------EKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292
                         +K       + S+R     ++    A        + A+     A+ 
Sbjct: 175 QCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALE 234

Query: 293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV 345
                +++ +  G + + L     AVE F +AL ++    G + E     + +
Sbjct: 235 LQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENI 287

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 1e-04
 Identities = 10/48 (20%), Positives = 20/48 (41%)

Query: 297 NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344
           +    F +G   +   D+  AV  FE A++ +P      + L   + +
Sbjct: 18  DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAE 65

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 41.7 bits (96), Expect = 2e-05
 Identities = 16/139 (11%), Positives = 37/139 (26%), Gaps = 17/139 (12%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
                   +Y  A    R+A+           +   ++       +      +     L 
Sbjct: 16  AQRQLVAGEYDEAAANCRRAMEI------SHTMPPEEAFDHAGFDAFCHAGLAEALAGLR 69

Query: 279 DLKGALLDTEFAMR-----------DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL 327
               AL   + A+            +G   + A++ +  A   L     A+  F+K +++
Sbjct: 70  SFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129

Query: 328 EPNDGGIKKELAVAKKKVS 346
                G         +   
Sbjct: 130 IEERKGETPGKERMMEVAI 148

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 43.0 bits (99), Expect = 3e-05
 Identities = 18/142 (12%), Positives = 35/142 (24%), Gaps = 6/142 (4%)

Query: 207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQI 266
                 + +           +       Y +                    +        
Sbjct: 194 QLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 253

Query: 267 FTNSSACKLKLGDLKGA------LLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVES 320
           + N +  ++ LG+ + A      L +   ++R   D  + L    Q Y        A   
Sbjct: 254 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRV 313

Query: 321 FEKALKLEPNDGGIKKELAVAK 342
              ALKL    G I   +   +
Sbjct: 314 LLDALKLANRTGFISHFVIEGE 335

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 38.4 bits (87), Expect = 8e-04
 Identities = 7/42 (16%), Positives = 16/42 (38%)

Query: 290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
            +R+   + +    + Q  +   + D A    + AL+  P  
Sbjct: 4   DIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPG 45

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 42.5 bits (98), Expect = 4e-05
 Identities = 10/49 (20%), Positives = 21/49 (42%)

Query: 283 ALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
              D        +   +  F  G+ Y++L D+D+A   F+ A+    ++
Sbjct: 194 LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 242

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 36.3 bits (82), Expect = 0.004
 Identities = 10/37 (27%), Positives = 18/37 (48%)

Query: 295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
           D+  + L+ +G  Y +L     A   F +AL + P+ 
Sbjct: 34  DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM 70

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (95), Expect = 2e-04
 Identities = 10/147 (6%), Positives = 28/147 (19%), Gaps = 27/147 (18%)

Query: 198 LDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSS 257
            +                   G    K+      ++    +  Y+               
Sbjct: 113 FNVDLPCRVKSSQ-------LGIISNKQTHTSAIVKPQSSSCSYIC-------------- 151

Query: 258 SLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAA 317
                      +             A      A +    N +   +      +  D    
Sbjct: 152 ------QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTT 205

Query: 318 VESFEKALKLEPNDGGIKKELAVAKKK 344
           +  + +++ ++         L  A  K
Sbjct: 206 IFYYCRSIAVKFPFPAASTNLQKALSK 232

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 38.9 bits (90), Expect = 5e-04
 Identities = 7/38 (18%), Positives = 16/38 (42%)

Query: 304 QGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341
           Q +  ++   +  A+E   +A+K  P D  ++      
Sbjct: 2   QWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIEL 39

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	347
d2igva1	172	Cyclophilin (eukaryotic) {Caenorhabditis elegans,	100.0
d1ihga2	195	Cyclophilin 40 isomerase domain {Cow (Bos taurus)	100.0
d2r99a1	161	Mitochondrial peptidyl-prolyl cis-trans isomerase,	100.0
d1a33a_	174	Cyclophilin (eukaryotic) {Nematode (Brugia malayi)	100.0
d2z6wa1	164	Mitochondrial peptidyl-prolyl cis-trans isomerase,	100.0
d1qnga_	170	Cyclophilin (eukaryotic) {Plasmodium falciparum [T	100.0
d1qoia_	173	Cyclophilin (eukaryotic) {Human (Homo sapiens), U4	100.0
d2cfea1	162	Cyclophilin-like allergen Mal s 6 {Malassezia symp	100.0
d1h0pa_	182	Cyclophilin (eukaryotic) {Caenorhabditis elegans,	100.0
d2rmca_	182	Cyclophilin (eukaryotic) {Mouse (Mus musculus), va	100.0
d1z81a1	186	Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId	100.0
d1xo7a_	166	Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId	100.0
d2ok3a1	159	Cyclophilin-like protein PPIL3B {Human (Homo sapie	100.0
d1xwna1	166	Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1	100.0
d2c3ba1	171	Cyclophilin (eukaryotic) {Aspergillus fumigatus [T	100.0
d2fu0a1	155	Putative cyclophilin PFE0505w {Plasmodium falcipar	100.0
d1zkca1	178	Peptidyl-prolyl cis-trans isomerase-like 2, Cyclop	100.0
d2b71a1	169	Cyclophilin-like protein PY00693 {Plasmodium yoeli	100.0
d1v9ta_	166	Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche	100.0
d1w74a_	171	Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycob	100.0
d2a2na1	164	Peptidylprolyl isomerase domain and WD repeat-cont	100.0
d1lopa_	164	Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche	100.0
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.9
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.87
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.86
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.86
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.82
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.76
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.74
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.67
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.64
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.59
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.57
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.55
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.55
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.5
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.49
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.49
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.48
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.48
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.45
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.39
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.34
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.34
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.3
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.29
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.26
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.26
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.25
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.24
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.2
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.13
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.09
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.04
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.02
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.97
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.95
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.95
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.91
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.84
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.8
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.75
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.65
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.54
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.53
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.52
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.48
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.39
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.36
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.32
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.32
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.11
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.09
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.9
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.78
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.71
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.56
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	90.01
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	89.48
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	88.59
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	87.01
d1wr0a1	77	Vacuolar sorting protein 4b (VPS4B, SKD1 protein)	84.28
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	80.23

>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

Probab=100.00  E-value=4.9e-48  Score=318.86  Aligned_cols=171  Identities=61%  Similarity=1.102  Sum_probs=160.9

Q ss_pred             CCCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCC
Q 019054            1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDG   80 (347)
Q Consensus         1 ~~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~   80 (347)
                      |+||+|||||+|+++++|+|+||||.+.||+||+||++||++...... .++..||+||.||||+|+++||+|++..+++
T Consensus         1 ~~~~~v~~Di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~~-~~k~~~y~~~~f~rv~~~~~i~~G~~~~~~~   79 (172)
T d2igva1           1 MSRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGK-SGKPLHFKGSKFHRIIPNFMIQGGDFTRGNG   79 (172)
T ss_dssp             CCCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCT-TSSBSCCTTCBCCEEETTTEEEECCTTTSSS
T ss_pred             CCCCEEEEEEEECCEeccEEEEEEcCCCCcHHHHHHHHHHhccccccc-cCcccccCCcceeEEEecceEEcCCccCCCC
Confidence            899999999999999999999999999999999999999998765432 4677799999999999999999999998899


Q ss_pred             CCCCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCc
Q 019054           81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC  160 (347)
Q Consensus        81 ~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~  160 (347)
                      +++.++++..+++|+....|+.+|+|+|++.+|++++|||||++++.|+||++|+|||+|++||++|++|+.+++. +++
T Consensus        80 ~~~~~~~~~~~~~e~~~~~~~~~G~lsma~~~~~~~~sqFfIt~~~~~~ld~~~~vFG~Vv~Gmdvl~~I~~~~~~-~g~  158 (172)
T d2igva1          80 TGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQ-SGK  158 (172)
T ss_dssp             SCCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TSC
T ss_pred             CCCcccCCCccCccccccccCCCcEEEEeecCCCCcCceeEeeecCCcccCCceeEEEEEeccHHHHHHHHcCCCC-CCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999988765 489


Q ss_pred             cccceEeccceec
Q 019054          161 PIADVTITDCGEI  173 (347)
Q Consensus       161 P~~~v~I~~~g~~  173 (347)
                      |..+|.|.+||++
T Consensus       159 P~~~i~I~~cG~l  171 (172)
T d2igva1         159 PVKDCMIADCGQL  171 (172)
T ss_dssp             CSSCEEEEEEEEE
T ss_pred             CCCCeEEEecccc
Confidence            9999999999987

>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.6e-46  Score=315.57  Aligned_cols=180  Identities=66%  Similarity=1.107  Sum_probs=167.5

Q ss_pred             CCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCC
Q 019054            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT   81 (347)
Q Consensus         2 ~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~   81 (347)
                      +||+|||||+|+++++|+|+||||.+.||+||+||++||+++.......++..||+|+.||||+|++++|+|++....++
T Consensus        13 ~np~v~~Di~i~~~~~G~I~IeL~~d~aP~tv~nF~~L~~~~~~~~~~~~~~~~y~g~~f~rv~~~~~i~~G~~~~~~~~   92 (195)
T d1ihga2          13 SNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGT   92 (195)
T ss_dssp             TSCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEETTTEEEECCTTTSSSS
T ss_pred             CCCEEEEEEEECCEeeeEEEEEECCCCChHHHHHHHHHhccccccccccCCccccCCceeeEEEcCceeecCCccCCCCC
Confidence            48999999999999999999999999999999999999998766554456677999999999999999999999888888


Q ss_pred             CCCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCcc
Q 019054           82 GGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (347)
Q Consensus        82 ~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P  161 (347)
                      ++...++..+++|+....|+++|+|+|++.++++++|||||++++.|+||++|+|||+|++||++|++|+.++++. ++|
T Consensus        93 ~~~~~~~~~~~~~~~~~~h~~~G~lsm~~~~~~s~~SqFfItl~~~~~LDg~ytVFG~Vv~Gmdvl~~I~~~~t~~-~~P  171 (195)
T d1ihga2          93 GGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKG-EKP  171 (195)
T ss_dssp             CCCBTTBSCBCCCCCCBCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEET-TEE
T ss_pred             CCccCCCCcccccccCcccCcceEEeeeecCCCCCCceeEeeccCCcccCCcceEEEEEecCHHHHHHHHcCCCCC-CCc
Confidence            8888999999999999999999999999999999999999999999999999999999999999999999988864 899


Q ss_pred             ccceEeccceecCCCCCCCCC
Q 019054          162 IADVTITDCGEIPEGADDGIS  182 (347)
Q Consensus       162 ~~~v~I~~~g~~~~~~~~~~~  182 (347)
                      ..+|.|.+||+++...++++.
T Consensus       172 ~~~i~I~~cG~l~~~~~~~~~  192 (195)
T d1ihga2         172 AKLCVIAECGELKEGDDWGIF  192 (195)
T ss_dssp             SSCEEEEEEEEECTTCCCCCS
T ss_pred             CCCeEEEECcccCCCCcCCCC
Confidence            999999999999988777644

>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-46  Score=303.10  Aligned_cols=161  Identities=57%  Similarity=0.976  Sum_probs=150.9

Q ss_pred             CCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCC
Q 019054            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG   82 (347)
Q Consensus         3 ~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~   82 (347)
                      ||+|||||+|+++++|+|+||||.+.||+||+||++||+..++        .+|+|+.||||+|+++||+|++....+.+
T Consensus         1 np~vy~di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~--------~~Y~g~~f~Rv~~~~~iq~G~~~~~~~~~   72 (161)
T d2r99a1           1 NPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKG--------FGFKGSSFHRIIPQFMCQGGDFTNHNGTG   72 (161)
T ss_dssp             CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS--------CCSTTCBEEEEETTTEEEECCTTTSSSSC
T ss_pred             CCEEEEEEEECCEeceEEEEEEcCCCCcHHHHHHHHhhhhccc--------cccCCcEEEEEEEeeeEEeeeccCCCCCC
Confidence            8999999999999999999999999999999999999976432        27999999999999999999999888888


Q ss_pred             CCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCccc
Q 019054           83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI  162 (347)
Q Consensus        83 ~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P~  162 (347)
                      +.+.++..++++.+..+|+++|+|+|++.+|++++|||||++++.|+||++|+|||+|++||++|++|+...+ .+++|.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~G~ls~~~~~~~s~~sqFfI~~~~~~~Ldg~~tvFG~Vv~G~dvl~~I~~~~~-~~~~P~  151 (161)
T d2r99a1          73 GKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGS-KDGKPK  151 (161)
T ss_dssp             CCBTTBSCBCCCCCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCC-TTCCCS
T ss_pred             CccccCccccccccccccccceeeeecccCCCCcCcceEeccCCccccCCcceEEEEEeehHHHHHHHHccCC-CCCcCC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999987665 458999


Q ss_pred             cceEecccee
Q 019054          163 ADVTITDCGE  172 (347)
Q Consensus       163 ~~v~I~~~g~  172 (347)
                      .+|.|.+||.
T Consensus       152 ~~i~I~~CGe  161 (161)
T d2r99a1         152 QKVIIADCGE  161 (161)
T ss_dssp             SCEEEEEEEE
T ss_pred             CCEEEEeCCC
Confidence            9999999984

>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

Probab=100.00  E-value=6.2e-46  Score=307.33  Aligned_cols=172  Identities=59%  Similarity=1.007  Sum_probs=163.0

Q ss_pred             CCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCC
Q 019054            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT   81 (347)
Q Consensus         2 ~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~   81 (347)
                      .|++|||||+|+++++|+|+||||++.||+||+||++||+++.+.+...++..||+++.||||++++++|+|+...++++
T Consensus         2 ~~~~v~~di~i~~~~~G~I~ieL~~d~aP~tv~nF~~l~~~~~~~~~~~~k~~~Y~~~~f~Rv~~~~~iq~g~~~~~~~~   81 (174)
T d1a33a_           2 DRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGT   81 (174)
T ss_dssp             CCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCCCTTCBEEEEETTTEEEECCTTTSSSS
T ss_pred             CCCEEEEEEEECCEeceEEEEEECCCCChHHHHHHHHHHhcccCCCcccCccceeCCceeeEEEeCCEEeeCCCCCCCCC
Confidence            37899999999999999999999999999999999999999877666567778999999999999999999999888888


Q ss_pred             CCCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCcc
Q 019054           82 GGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (347)
Q Consensus        82 ~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P  161 (347)
                      ++.+.++..+.+++...+|+++|+++|++.+|++++|||||++++.|+||++|+|||+|++||++|++|+.++++.+++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~s~~sqFfI~~~~~p~ld~~~~vFG~VveG~dvl~~I~~~~t~~~~~P  161 (174)
T d1a33a_          82 GGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRP  161 (174)
T ss_dssp             CCCCTTSSCBCCCCSCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCB
T ss_pred             CCCCccCccccccccccccCcceeeeeeccCCCCCCcccccccCCcccccccceeEEEEechHHHHHHHHhCCcCCCCCC
Confidence            88888888888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceEeccceec
Q 019054          162 IADVTITDCGEI  173 (347)
Q Consensus       162 ~~~v~I~~~g~~  173 (347)
                      ..+|.|.+||.+
T Consensus       162 ~~~i~I~~cGel  173 (174)
T d1a33a_         162 LADVVILNCGEL  173 (174)
T ss_dssp             SSCEEEEEEEEC
T ss_pred             CCCEEEEeeEEE
Confidence            999999999976

>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-46  Score=304.12  Aligned_cols=163  Identities=58%  Similarity=0.971  Sum_probs=154.3

Q ss_pred             CCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCC
Q 019054            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT   81 (347)
Q Consensus         2 ~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~   81 (347)
                      .||+|||||++++++.|+|+||||++.||+||+||++||++++.        .+|+||.||||+|++++|+|++....++
T Consensus         1 ~n~~v~~Di~i~~~~~G~i~ieL~~~~aP~tv~nF~~l~~~~~~--------~~Y~g~~f~rv~~~~~iq~g~~~~~~~~   72 (164)
T d2z6wa1           1 GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKG--------FGYKGSTFHRVIPSFMCQAGDFTNHNGT   72 (164)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS--------CCSTTCBEEEEETTTEEEECCTTTSSSS
T ss_pred             CCCeEEEEEEECCEeceEEEEEECCCcCcHHHHHHHHHHhcCCC--------cccCCcEEEEecccceEecCCccCCCCC
Confidence            49999999999999999999999999999999999999987642        2799999999999999999999888888


Q ss_pred             CCCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCcc
Q 019054           82 GGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (347)
Q Consensus        82 ~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P  161 (347)
                      ++.+.++..++++.+...|+++|+|||++.++++++|||||++.+.|+||++|+|||+|++||++|++|+.+++.. ++|
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfi~~~~~~~ldg~ytVFG~Vv~G~dvl~~I~~~~~~~-~~P  151 (164)
T d2z6wa1          73 GGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKS-GRT  151 (164)
T ss_dssp             CCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCCTT-SCC
T ss_pred             CCccccCCcCCccccccccCCccEEEEecCCCCCCCcceeccccCCCcccccceEEEEecccHHHHHHHHhCCCCC-CCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998765 889


Q ss_pred             ccceEeccceec
Q 019054          162 IADVTITDCGEI  173 (347)
Q Consensus       162 ~~~v~I~~~g~~  173 (347)
                      ..+|.|.+||.+
T Consensus       152 ~~~i~I~~cG~l  163 (164)
T d2z6wa1         152 SKKIVITDCGQL  163 (164)
T ss_dssp             SSCEEEEEEEEC
T ss_pred             CCCEEEEeCeec
Confidence            999999999987

>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=4.7e-46  Score=306.55  Aligned_cols=169  Identities=59%  Similarity=0.965  Sum_probs=157.2

Q ss_pred             CCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCC
Q 019054            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT   81 (347)
Q Consensus         2 ~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~   81 (347)
                      +||+|||||+|+++++|+|+||||++.||+||+||++||++.+...  .++..||+|+.||||+++++||+|+...+++.
T Consensus         2 ~r~~vy~Di~i~~t~~G~ivIeL~~~~aP~tv~nF~~l~~~~~~~~--~~~~~~y~g~~~~rv~~~~~iq~g~~~~~~~~   79 (170)
T d1qnga_           2 KRSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGS--RGKNLHYKNSIFHRIIPQFMCQGGDITNGNGS   79 (170)
T ss_dssp             CSCEEEEEEEESSSEEEEEEEEECTTTCHHHHHHHHHHHHTCEECT--TSSEECCTTCBCCEEETTTEEEECCTTTSSSS
T ss_pred             CCCEEEEEEEECCEEccEEEEEECCCCChHHHHHHHhhhccccccc--cCccCccCcccceEEEeCceEEecCccCCCCC
Confidence            5899999999999999999999999999999999999998754332  24556999999999999999999999988888


Q ss_pred             CCCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCcc
Q 019054           82 GGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (347)
Q Consensus        82 ~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P  161 (347)
                      ++...++..++++.+.+.|+++|+|+|++.++++++|||||++++.|+||++|+|||+|++||++|++|+..+++. +.|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~Vv~Gmdvl~~I~~~~~~~-g~P  158 (170)
T d1qnga_          80 GGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGAKS-GYV  158 (170)
T ss_dssp             CCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTT-CCC
T ss_pred             CCcccCCCccccccccccCCCCeEEEEeecCCCCccccceeccCCcccccccccEEeEEeccHHHHHHHHhcCCCC-cCC
Confidence            8889999999999999999999999999999999999999999999999999999999999999999999988765 789


Q ss_pred             ccceEeccceec
Q 019054          162 IADVTITDCGEI  173 (347)
Q Consensus       162 ~~~v~I~~~g~~  173 (347)
                      ..+|+|.+||.+
T Consensus       159 ~~~i~I~~CG~l  170 (170)
T d1qnga_         159 KRSVVITDCGEL  170 (170)
T ss_dssp             SSCEEEEEEEEC
T ss_pred             ccCEEEEeeEcC
Confidence            999999999975

>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]

Probab=100.00  E-value=3.9e-45  Score=302.20  Aligned_cols=169  Identities=58%  Similarity=0.988  Sum_probs=154.5

Q ss_pred             CCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCC
Q 019054            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT   81 (347)
Q Consensus         2 ~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~   81 (347)
                      .||+|||||+|+++++|+|+||||++.||+||+||++||+.+...   .++.+.|+++.||||+|++++|+|++..+.+.
T Consensus         5 ~np~v~~di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~---~~~~~~y~~~~f~rv~~~~~~q~G~~~~~~~~   81 (173)
T d1qoia_           5 VNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRK---DGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGT   81 (173)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHSCCEE---TTEECSSTTCBCCEEETTTEEEECCTTTSSSC
T ss_pred             CCCEEEEEEEECCEeCeEEEEEEcCCCCcHHHHHHHHhhcccccc---cCCCCCcCCcccceeccceeeccCCcccCCcc
Confidence            499999999999999999999999999999999999999976211   12223499999999999999999999877777


Q ss_pred             CCCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCcc
Q 019054           82 GGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (347)
Q Consensus        82 ~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P  161 (347)
                      .....++.++.++.+...|+++|+|+|++.+|++++|||||++++.|+||++|+|||+|++||++|++|+.++++.+++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~G~l~ma~~~~~s~~sqFfI~~~~~~~ldg~~tvFG~Vi~G~dvl~~I~~~~t~~~~~P  161 (173)
T d1qoia_          82 GVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKP  161 (173)
T ss_dssp             CCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCB
T ss_pred             eeecccCCcccccccccccCCCcEEEeeecCCCCCCceeeeeccCCccCCcceeEEEEEechHHHHHHHHhCCcCCCCcC
Confidence            77777888899999989999999999999999999999999999999999999999999999999999999999988999


Q ss_pred             ccceEeccceec
Q 019054          162 IADVTITDCGEI  173 (347)
Q Consensus       162 ~~~v~I~~~g~~  173 (347)
                      ..+|.|.+||.+
T Consensus       162 ~~~i~I~~cGel  173 (173)
T d1qoia_         162 KLPVVISQCGEM  173 (173)
T ss_dssp             SSCEEEEEEEEC
T ss_pred             CCCEEEEcccCC
Confidence            999999999864

>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]

Probab=100.00  E-value=8.8e-45  Score=296.15  Aligned_cols=160  Identities=61%  Similarity=1.005  Sum_probs=150.2

Q ss_pred             eEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCC
Q 019054            5 RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGE   84 (347)
Q Consensus         5 ~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~   84 (347)
                      .|||||+++|+++|+|+||||++.||+||+||++||+++.++        +|+|+.||||+|+++||+|++..+++.++.
T Consensus         3 ~V~fDi~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~--------~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~   74 (162)
T d2cfea1           3 NVFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGF--------GYAGSHFHRVIPDFMLQGGDFTAGNGTGGK   74 (162)
T ss_dssp             CEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSC--------CSTTCBCCEEETTTEEEECCTTTSSSSCCC
T ss_pred             eEEEEEEECCEEeeEEEEEEcCCCChHHHHHHHHHHhhccCC--------ccCCCEEEEEEecceEecCCCCCCCCCCCc
Confidence            589999999999999999999999999999999999987432        599999999999999999999988888888


Q ss_pred             cccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCccccc
Q 019054           85 SIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIAD  164 (347)
Q Consensus        85 ~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P~~~  164 (347)
                      ++++..|.+|++.++|+++|+|+|++.++++++|||||++.+.|+||++|+|||+|++||+++++|+...+ .+++|..+
T Consensus        75 ~~~~~~~~~e~~~~~h~~~G~vsm~~~~~~s~~sqF~I~~~~~~~ld~~~~vFG~Vi~G~dvl~~I~~~~~-~~~~P~~~  153 (162)
T d2cfea1          75 SIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSWLDGKHVVFGEVIDGMNVVKAIEAEGS-GSGKPRSR  153 (162)
T ss_dssp             BTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCC-TTSCCSSC
T ss_pred             ccCCCccccccCCCCCCCceEEEEeecCCCCCCcceEEeecCCccccccceEEEEEEehHHHHHHHhcCCC-CCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999987665 45899999


Q ss_pred             eEeccceec
Q 019054          165 VTITDCGEI  173 (347)
Q Consensus       165 v~I~~~g~~  173 (347)
                      |+|.+|++.
T Consensus       154 i~I~~cgv~  162 (162)
T d2cfea1         154 IEIAKCGVC  162 (162)
T ss_dssp             EEEEEEEEC
T ss_pred             eEEEeeEcC
Confidence            999999973

>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]

Probab=100.00  E-value=7.1e-45  Score=302.58  Aligned_cols=166  Identities=54%  Similarity=0.893  Sum_probs=156.7

Q ss_pred             CeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCC
Q 019054            4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGG   83 (347)
Q Consensus         4 ~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~   83 (347)
                      .+|||||+|+++++|+|+||||.+.||+||+||++||++++.        .+|+||.||||+|+|++|||++..++++++
T Consensus         7 ~~vy~di~i~~~~~G~i~IeL~~d~aP~tv~nF~~l~~~g~~--------~~y~g~~f~rv~~~~~iq~G~~~~~~~~g~   78 (182)
T d1h0pa_           7 DRVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKG--------EGYPGSKFHRVIADFMIQGGDFTRGDGTGG   78 (182)
T ss_dssp             EEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHSCTT--------TSSTTCBCCEEETTTEEEECCTTTSSSSCC
T ss_pred             CeEEEEEEECCEECeEEEEEECCCCChHHHHHHHHHHHhccc--------CCcCCceEEEEEecceEEcCCCCCCCCCCC
Confidence            379999999999999999999999999999999999987532        389999999999999999999998899999


Q ss_pred             CcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCcccc
Q 019054           84 ESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIA  163 (347)
Q Consensus        84 ~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P~~  163 (347)
                      .+.++..+.++++...|+.+|+++|++.++++++|||||++++.|+||++|+|||+|++||+++++|+.+.++.+++|..
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~G~~~~a~~g~~s~~sqFfIt~~~~~~ldg~ytvFG~Vi~G~dvl~~I~~~~~~~~~~P~~  158 (182)
T d1h0pa_          79 RSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQ  158 (182)
T ss_dssp             CBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEETTTEESS
T ss_pred             CCCCCCccCcccccccccCCceeeecccCCCCcCccccccccccccccccceeEEEEeehHHHHHHHHhcCCCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEeccceecCCCC
Q 019054          164 DVTITDCGEIPEGA  177 (347)
Q Consensus       164 ~v~I~~~g~~~~~~  177 (347)
                      +|.|.+||.+....
T Consensus       159 ~v~I~~cG~l~~~~  172 (182)
T d1h0pa_         159 DVIIAASGHIAVDT  172 (182)
T ss_dssp             CEEEEEEEEEEEEE
T ss_pred             CEEEEECCeEeCCC
Confidence            99999999886433

>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]

Probab=100.00  E-value=3e-44  Score=298.62  Aligned_cols=163  Identities=60%  Similarity=0.968  Sum_probs=155.3

Q ss_pred             CeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCC
Q 019054            4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGG   83 (347)
Q Consensus         4 ~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~   83 (347)
                      .+|||||+|+++++|+|+||||++.||+||+||++||++++.        .+|+|+.||||+|++++|+|++...+++++
T Consensus         8 ~~vy~di~i~~~~~G~ivieL~~d~aP~tv~nF~~l~~~~k~--------~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~   79 (182)
T d2rmca_           8 DKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKG--------YGYKGSIFHRVIKDFMIQGGDFTARDGTGG   79 (182)
T ss_dssp             EEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTS--------CSSTTCBEEEEETTTEEEECCCSSSSSSCC
T ss_pred             CeEEEEEEECCEECcEEEEEEcCCCCcHHHHHHHHhhhcCCC--------ccccCceeeeeecCceEEcCCCCCCCCCCC
Confidence            479999999999999999999999999999999999987642        279999999999999999999988888999


Q ss_pred             CcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCcccc
Q 019054           84 ESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIA  163 (347)
Q Consensus        84 ~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P~~  163 (347)
                      .++++..++++++...|+++|+|+|++.++++++|||||++++.++||++|+|||+|++||++|++|+.++++.+++|..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfI~~~~~~~ld~~~~vFG~Vi~G~dvl~~I~~~~~~~~~~P~~  159 (182)
T d2rmca_          80 MSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLT  159 (182)
T ss_dssp             CBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSS
T ss_pred             CCCcCCcccccccccccCCCccEehhhcCCCccCccccccccCCchhcccceEEEEEechHHHHHHHHhCCcCCCCcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEeccceecC
Q 019054          164 DVTITDCGEIP  174 (347)
Q Consensus       164 ~v~I~~~g~~~  174 (347)
                      +|+|.+|+++.
T Consensus       160 ~v~I~~~g~l~  170 (182)
T d2rmca_         160 DCTIVNSGKID  170 (182)
T ss_dssp             CEEEEEEEEEE
T ss_pred             CeEEEEeeEEe
Confidence            99999999984

>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]

Probab=100.00  E-value=1.9e-44  Score=300.83  Aligned_cols=169  Identities=49%  Similarity=0.926  Sum_probs=156.9

Q ss_pred             CCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCC
Q 019054            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT   81 (347)
Q Consensus         2 ~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~   81 (347)
                      .||+|||||+++++++|+|+||||++.||+||+||++||+++...   .++...|+|+.||||++++++|+|++....+.
T Consensus        15 ~np~V~~di~i~~~~~G~I~ieL~~d~aP~tv~nF~~L~~~~~~~---~~~~~~Y~g~~f~rv~~~~~i~~G~~~~~~~~   91 (186)
T d1z81a1          15 SNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKV---NNLPVGYKNTIFHRVIKEFMIQGGDFINHNGS   91 (186)
T ss_dssp             TCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCBS---SSSBCSSTTEECCEEETTTEEEECCTTTSSSC
T ss_pred             CCCEEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHHhccccc---CCcccccCCCeeeeeecceeeecCCccccCCc
Confidence            389999999999999999999999999999999999999987433   23445699999999999999999999888888


Q ss_pred             CCCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeC--hHHHHHHhcccCCC-C
Q 019054           82 GGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKG--MGVVRSIEHVMTGD-N  158 (347)
Q Consensus        82 ~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g--~~vl~~I~~~~~~~-~  158 (347)
                      +..+++|..++++.....|+++|+++|++.++++++|||||++++.|+||++|+|||+|++|  |+++++|+.++++. .
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~g~~~~~sqFfIt~~~~p~Ldg~~tVFG~Vv~G~~mdvv~kI~~~~~~~~~  171 (186)
T d1z81a1          92 GSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYI  171 (186)
T ss_dssp             CCCBTTBSCCCCCCCCSCCCSTTEEEECCSSSSCCCSCEEEESSCCGGGBTTBCEEEEECSHHHHHHHHHHHHSCBCTTT
T ss_pred             ccccccCCcccccccccccCCCccchhhhcCCCccccceeeecccccccCCCccEEEEEEeCccHHHHHHHhccCCCCCC
Confidence            88889999999999999999999999999999999999999999999999999999999998  99999999998875 5


Q ss_pred             CccccceEeccceec
Q 019054          159 DCPIADVTITDCGEI  173 (347)
Q Consensus       159 ~~P~~~v~I~~~g~~  173 (347)
                      ++|..+|.|.+||.+
T Consensus       172 ~~P~~~i~I~~CGel  186 (186)
T d1z81a1         172 YKPKIPINVVECGEL  186 (186)
T ss_dssp             CCBSSCEEEEEEEEC
T ss_pred             CccCCCEEEEeCCcC
Confidence            899999999999975

>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=100.00  E-value=6.6e-44  Score=292.49  Aligned_cols=162  Identities=54%  Similarity=0.957  Sum_probs=149.5

Q ss_pred             CCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCC
Q 019054            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG   82 (347)
Q Consensus         3 ~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~   82 (347)
                      .++|||||+++++++|+|+||||.+.||+||+||++||+++.+.        +|+|+.|||++|++++|+|++...++++
T Consensus         5 t~~V~~di~i~~~~~G~i~ieL~~~~aP~t~~nF~~l~~~~~~~--------~Y~g~~f~rv~~~~~iq~G~~~~~~~~~   76 (166)
T d1xo7a_           5 TDKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGF--------GYKGSIFHRVIRNFMIQGGDFTNFDGTG   76 (166)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSC--------CSTTCBEEEEETTTEEEECCTTTSSSSC
T ss_pred             CCeEEEEEEECCEECcEEEEEECCCCChHHHHHHHHhhcccccc--------cccCcEEEEEcCCCEEEeCCCCCCCCCC
Confidence            57899999999999999999999999999999999999987322        4999999999999999999999888888


Q ss_pred             CCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCccc
Q 019054           83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI  162 (347)
Q Consensus        83 ~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P~  162 (347)
                      +.+.++..++++... .|+.+|+|+|++.+||+++|||||++++.|+||++|+|||+|++||++|++|++++++.+++|.
T Consensus        77 ~~~~~~~~~~~~~~~-~~~~~G~l~~a~~g~~s~~sqFfIt~~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~P~  155 (166)
T d1xo7a_          77 GKSIYGTRFDDENLK-IKHFVGAVSMANAGPNSNGSQFFVTTAPTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPK  155 (166)
T ss_dssp             CCBTTBSCBCCCCCC-SCCCTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBS
T ss_pred             CCCCCCccccccccc-ccccccceeecccCCCCCCCeeEEccCCccccCccceeeeEEeeHHHHHHHHHcCCCCCCCCCC
Confidence            888888777777654 4557899999999999999999999999999999999999999999999999999998889999


Q ss_pred             cceEeccceec
Q 019054          163 ADVTITDCGEI  173 (347)
Q Consensus       163 ~~v~I~~~g~~  173 (347)
                      .+|.|.+|+++
T Consensus       156 ~~i~I~~cgvl  166 (166)
T d1xo7a_         156 KAVKINDCGVL  166 (166)
T ss_dssp             SCEEEEEEEEC
T ss_pred             CCEEEEeeEeC
Confidence            99999999975

>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.3e-42  Score=278.06  Aligned_cols=154  Identities=47%  Similarity=0.763  Sum_probs=140.2

Q ss_pred             EEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCCc
Q 019054            6 CFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGES   85 (347)
Q Consensus         6 v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~   85 (347)
                      |.|+++     .|+|+||||++.||+||+||++||+++           ||+|+.||||+|+++|||||+.. .+.++..
T Consensus         3 V~~~T~-----~G~i~ieL~~~~aP~tv~nF~~L~~~g-----------~Y~~~~f~rv~~~~~iq~Gd~~~-~~~~~~~   65 (159)
T d2ok3a1           3 VTLHTD-----VGDIKIEVFCERTPKTCENFLALCASN-----------YYNGCIFHRNIKGFMVQTGDPTG-TGRGGNS   65 (159)
T ss_dssp             EEEEET-----TEEEEEEECTTTCHHHHHHHHHHHHTT-----------TTTTCBCCEEETTTEEEECCTTS-SSSCCCC
T ss_pred             EEEEeC-----CeEEEEEEcCCCChHHHHHHHHHHhhh-----------cccceeEecccCCeEEEeCCccc-cCCCCcc
Confidence            777776     799999999999999999999999998           89999999999999999999874 4556666


Q ss_pred             ccCCCCCCCcc-ccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCC-Ccccc
Q 019054           86 IYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDN-DCPIA  163 (347)
Q Consensus        86 ~~~~~~~~e~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~-~~P~~  163 (347)
                      .++..+++|.. .++|+++|+|||++.++++++|||||++++.|++|++|+|||+|++||+++++|++++++.. ++|..
T Consensus        66 ~~~~~~~~e~~~~~~~~~~G~lsma~~~~~s~~sqFfIt~~~~p~ld~~~tvFG~V~~G~~vl~~I~~~~~~~~~~~P~~  145 (159)
T d2ok3a1          66 IWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLN  145 (159)
T ss_dssp             TTSSCBCCCCCTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTTCCBSS
T ss_pred             cCCCccccccccCCCCCCCeEEEEeeCCCCCcCcceEeeeccCcccccceEEEEecccchHHHHHHHcCcCCCCCCCcCC
Confidence            78888888755 68899999999999999999999999999999999999999999999999999999998764 67999


Q ss_pred             ceEeccceecCCC
Q 019054          164 DVTITDCGEIPEG  176 (347)
Q Consensus       164 ~v~I~~~g~~~~~  176 (347)
                      +|+|.+|.++.+|
T Consensus       146 ~i~I~~v~i~~~P  158 (159)
T d2ok3a1         146 DVHIKDITIHANP  158 (159)
T ss_dssp             CCBEEEEEEECCS
T ss_pred             CcEEEEEEEEeCC
Confidence            9999999998655

>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.3e-42  Score=279.26  Aligned_cols=152  Identities=51%  Similarity=0.860  Sum_probs=142.9

Q ss_pred             CCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCC
Q 019054            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG   82 (347)
Q Consensus         3 ~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~   82 (347)
                      +|+|+|+|+     .|+|+||||++.||+||+||++||+.+           ||+|+.||||+++|+|||||+. +.+.+
T Consensus        11 ~p~v~~~T~-----~G~i~ieL~~~~aP~tv~nF~~L~~~g-----------~Y~g~~f~rv~~~~~iq~Gd~~-~~~~~   73 (166)
T d1xwna1          11 PPNVYLETS-----MGIIVLELYWKHAPKTCKNFAELARRG-----------YYNGTKFHRIIKDFMIQGGDPT-GTGRG   73 (166)
T ss_dssp             CCEEEEEES-----SCEEEEEECTTTCHHHHHHHHHHHHHT-----------SSTTCCEEEEETTTEEEECCST-TTTSS
T ss_pred             CCEEEEEEC-----ceeEEEEEcCCCChHHHHHHHHHHhcC-----------CcCceeeeEEcccEEEEeCCCC-CCCCC
Confidence            789999999     599999999999999999999999987           8999999999999999999986 67788


Q ss_pred             CCcccCCCCCCCc-cccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCcc
Q 019054           83 GESIYGLKFEDEN-FELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (347)
Q Consensus        83 ~~~~~~~~~~~e~-~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P  161 (347)
                      +.++++..+++|. ..+.|+++|+|+|++.++|+++|||||++++.|+||++|+|||+|++||+++++|++++++.+++|
T Consensus        74 ~~~~~~~~~~~e~~~~~~~~~~G~lsm~~~~~~s~~sqFfI~~~~~~~ld~~~tvFG~Vi~G~dvl~~I~~~~t~~~~~P  153 (166)
T d1xwna1          74 GASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRP  153 (166)
T ss_dssp             CCCSSCSCCCCCCCTTCCSCSSSEEEEEEEETTEEEEEEEEECSCCSTTTTTSEEEEECSSCHHHHHHHHHSCBCSSSCB
T ss_pred             CccCCCCccccccCCCCCCCCCeEEEecccCCCCCCcceEEeecChhhccccceEEEEEechHHHHHHHHhCCCCCCCCC
Confidence            8888999998884 478899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceEeccce
Q 019054          162 IADVTITDCG  171 (347)
Q Consensus       162 ~~~v~I~~~g  171 (347)
                      ..+|+|.+..
T Consensus       154 ~~~I~I~~a~  163 (166)
T d1xwna1         154 VDDVKIIKAY  163 (166)
T ss_dssp             SSCCCEEEEE
T ss_pred             CCCeEEEEee
Confidence            9999998754

>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]

Probab=100.00  E-value=4.8e-42  Score=282.37  Aligned_cols=162  Identities=53%  Similarity=0.897  Sum_probs=120.4

Q ss_pred             CeEEEEEE-----ECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCC
Q 019054            4 PRCFLDIS-----IGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAG   78 (347)
Q Consensus         4 ~~v~~~~~-----~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~   78 (347)
                      ++|||||.     ++.++.|+|+||||.+.||+||+||++||+++...        +|+++.||||+|++++|+||+..+
T Consensus         2 ~~v~~di~~~~~~~~~T~~G~i~IeL~~~~aP~tv~nF~~l~~~~~~~--------~y~~~~f~ri~~~~~iq~G~~~~~   73 (171)
T d2c3ba1           2 SQVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGE--------GYRESTFHRIIPNFMIQGGDFTRG   73 (171)
T ss_dssp             CCEEEEEEECCTTCSCCEEEEEEEEECTTTSHHHHHHHHHHHHSCTTT--------SSTTCBCCEEETTTEEEECC----
T ss_pred             CeEEEeeeccccccccceeeEEEEEEcCCCChHHHHHHHHHhhhcccc--------cccCceeeEEEEEEeeEcCCccCC
Confidence            57999998     66788999999999999999999999999986322        499999999999999999999888


Q ss_pred             CCCCCCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEE--eChHHHHHHhcccCC
Q 019054           79 DGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVI--KGMGVVRSIEHVMTG  156 (347)
Q Consensus        79 ~~~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~--~g~~vl~~I~~~~~~  156 (347)
                      ++.++.+.++..+.+++..+.|+++|+|||++.+|++++|||||++++.|+||++|+|||+|+  +||+++++|+.+++.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfI~~~~~~~ldg~~tvFG~Vie~~G~dvl~~I~~~~t~  153 (171)
T d2c3ba1          74 NGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSS  153 (171)
T ss_dssp             ------------------CHHHHHTCEEEEC---------CEEEECSCCTTCCSCCEEEEEECSHHHHHHHHHHHTTCCT
T ss_pred             CCCCCCcCCCCccccccccccCCCCceEEeeecCCCCCCcceeeccCCccccCCCceEEEEEEeccCHHHHHHHHcCCCC
Confidence            888888888888999999999999999999999999999999999999999999999999999  499999999999987


Q ss_pred             CC-CccccceEeccceec
Q 019054          157 DN-DCPIADVTITDCGEI  173 (347)
Q Consensus       157 ~~-~~P~~~v~I~~~g~~  173 (347)
                      .. ..|..++.|.+||.+
T Consensus       154 ~g~~~p~~~v~I~~cGel  171 (171)
T d2c3ba1         154 SGSVRSNTRPKIVNCGEL  171 (171)
T ss_dssp             TSCCCSSSCCEEEEEEEC
T ss_pred             CCCcCCCCCEEEEeCccC
Confidence            74 468999999999875

>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=1.2e-40  Score=269.91  Aligned_cols=150  Identities=48%  Similarity=0.728  Sum_probs=139.4

Q ss_pred             EEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCCc
Q 019054            6 CFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGES   85 (347)
Q Consensus         6 v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~   85 (347)
                      |.|.|+     .|+|+||||++.||+||+||++||+++           ||+||.||||+|++++||||+. +.+.++.+
T Consensus         4 ~~i~T~-----~G~i~ieL~~~~aP~tv~nF~~l~~~g-----------~Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~~~   66 (155)
T d2fu0a1           4 AIIYTT-----MGDIHISLFYKECKKTVQNFSVHSING-----------YYNNCIFHRVIKHFMVQTGDPS-GDGTGGES   66 (155)
T ss_dssp             EEEEET-----TEEEEEEECTTTCHHHHHHHHHHHHTT-----------TTTTCBCCEEETTTEEEECCTT-SSSSCCCC
T ss_pred             EEEEEc-----ccEEEEEEcCCCChHHHHHHhhHhhCC-----------ccccceeeeeeecceeeccCCC-CCCcCCcc
Confidence            556665     799999999999999999999999987           8999999999999999999986 56778888


Q ss_pred             ccCCCCCCCcc-ccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCccccc
Q 019054           86 IYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIAD  164 (347)
Q Consensus        86 ~~~~~~~~e~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P~~~  164 (347)
                      .+|..++++.. .+.|.++|+++|++.++++++|||||++++.|+||++|+|||+|++||+++++|++++++.+++|..+
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~sqFfI~~~~~~~ld~~~tvFG~Vi~G~~vv~~I~~~~t~~~~~P~~~  146 (155)
T d2fu0a1          67 IWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLED  146 (155)
T ss_dssp             TTSSCBCCCCBTTBCSSSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSC
T ss_pred             cCCCccccccccccccCCccEEEecccCCCCCCccceecccCccccccceEEEEEEeccHHHHHHHHhCCCCCCCCcCCC
Confidence            99999999877 58899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEecccee
Q 019054          165 VTITDCGE  172 (347)
Q Consensus       165 v~I~~~g~  172 (347)
                      |+|.++.+
T Consensus       147 i~I~~v~i  154 (155)
T d2fu0a1         147 IKILNIKI  154 (155)
T ss_dssp             CBEEEEEE
T ss_pred             cEEEEEEE
Confidence            99998753

>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-40  Score=275.26  Aligned_cols=157  Identities=43%  Similarity=0.728  Sum_probs=143.5

Q ss_pred             eEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCC
Q 019054            5 RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGE   84 (347)
Q Consensus         5 ~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~   84 (347)
                      +|-|.|+     .|+|+||||++.||+||+||++||+++           ||+|+.||||+|++++||||+. ..|+++.
T Consensus         2 ~v~l~T~-----~G~i~IeL~~~~aP~tv~nF~~L~~~~-----------~Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~~   64 (178)
T d1zkca1           2 YVRLHTN-----KGDLNLELHCDLTPKTCENFIRLCKKH-----------YYDGTIFHRSIRNFVIQGGDPT-GTGTGGE   64 (178)
T ss_dssp             EEEEEET-----TEEEEEEECTTTSHHHHHHHHHHHHTT-----------TTTTEEEEEEETTTEEEECCTT-SSSSCCC
T ss_pred             EEEEEeC-----CEEEEEEEcCCCChHHHHHHHHHHhcC-----------CcCceEeeeccceeEEecCCcc-CCCCCCc
Confidence            3556665     799999999999999999999999987           8999999999999999999986 5788888


Q ss_pred             cccCCCCCCCcc-ccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCC-CCCccc
Q 019054           85 SIYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTG-DNDCPI  162 (347)
Q Consensus        85 ~~~~~~~~~e~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~-~~~~P~  162 (347)
                      +.++.++++|.. .++|+++|+|+|++.++++++|||||++++.|+||++|+|||+|++||+++++|++++++ .++.|.
T Consensus        65 ~~~~~~~~~E~~~~l~~~~~G~lsma~~~~~s~~sqF~It~~~~~~ld~~~~vFG~Vv~G~dvl~~I~~~~t~~~~~~P~  144 (178)
T d1zkca1          65 SYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPK  144 (178)
T ss_dssp             BTTBSCBCCCCCTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTTCCBS
T ss_pred             ccCCCCcCCccccccCCCCCeEEEEeecCCCCccceeeccccCCcccCCcceEEEEeeCcHHHHHHHHcCCCCCCCCccC
Confidence            899999998854 789999999999999999999999999999999999999999999999999999999886 458999


Q ss_pred             cceEeccceecCCCCC
Q 019054          163 ADVTITDCGEIPEGAD  178 (347)
Q Consensus       163 ~~v~I~~~g~~~~~~~  178 (347)
                      .+|+|.+|.++.++++
T Consensus       145 ~~v~I~~~~Il~~pf~  160 (178)
T d1zkca1         145 EEIRIDATTVFVDPYE  160 (178)
T ss_dssp             SCCEEEEEEEEECTTH
T ss_pred             CCeEEEEEEEEcCCcc
Confidence            9999999999865443

>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]

Probab=100.00  E-value=5e-40  Score=269.70  Aligned_cols=152  Identities=49%  Similarity=0.724  Sum_probs=138.8

Q ss_pred             CCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCC
Q 019054            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG   82 (347)
Q Consensus         3 ~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~   82 (347)
                      +.+|.|+|+     .|+|+||||++.||+||+||++||+.+           ||+|+.||||++++++|||++. +.+.+
T Consensus        16 ~~~V~l~T~-----~G~i~IeL~~d~aP~tv~nF~~L~~~g-----------~Y~~~~f~rv~~~~~iq~g~~~-~~~~~   78 (169)
T d2b71a1          16 RGYITIYTN-----LGDFEVELYWYHSPKTCLNFYTLCEMG-----------FYDNTIFHRVIPNFVIQGGDPT-GTGKG   78 (169)
T ss_dssp             SCEEEEEET-----TEEEEEEECTTTSHHHHHHHHHHHHTT-----------TTTTEEEEEEETTTEEEEEETT-SSSSC
T ss_pred             ccEEEEEeC-----ceeEEEEEeCCCCcHHHHHHHHHhhCC-----------ccceeeeccccceeeEeccccc-cccCC
Confidence            456666666     799999999999999999999999987           8999999999999999999986 45566


Q ss_pred             CCcccCCCCCCCcc-ccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCcc
Q 019054           83 GESIYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (347)
Q Consensus        83 ~~~~~~~~~~~e~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P  161 (347)
                      +.++++..+++|.. .++|.++|+|+|++.+|++++|||||++++.|+||++|+|||+|++||++|++|++++++.+++|
T Consensus        79 ~~~~~~~~~~~e~~~~l~h~~~g~ls~~~~~p~s~~sqFfIt~~~~~~ld~~~tvFG~Vv~G~dvl~~I~~~~~~~~~~P  158 (169)
T d2b71a1          79 GKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKP  158 (169)
T ss_dssp             CCBTTBSCBCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTCCB
T ss_pred             CccccccccccccccccCCCCcEEEEhhhCCCCCCCCEEEEecCCcchhhhhcceeeEEeccHHHHHHHHhCCCCCCCCC
Confidence            77777888888854 68999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceEeccce
Q 019054          162 IADVTITDCG  171 (347)
Q Consensus       162 ~~~v~I~~~g  171 (347)
                      ..+|+|.++.
T Consensus       159 ~~~i~I~~~~  168 (169)
T d2b71a1         159 IFDLKILRTS  168 (169)
T ss_dssp             SSCCEEEEEE
T ss_pred             CCCeEEEEcc
Confidence            9999998764

>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.7e-40  Score=268.48  Aligned_cols=154  Identities=32%  Similarity=0.503  Sum_probs=137.0

Q ss_pred             CCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCC
Q 019054            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT   81 (347)
Q Consensus         2 ~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~   81 (347)
                      .||+|+|+|+     .|+|+||||++.||+||+||++||+.+           ||+||.||||+|+|++|+|++....+.
T Consensus         3 g~~~V~l~T~-----~G~i~ieL~~~~aP~tv~nF~~L~~~~-----------~Y~g~~fhRv~~~~~iq~G~~~~~~~~   66 (166)
T d1v9ta_           3 GDPHVLLTTS-----AGNIELELDKQKAPVSVQNFVDYVNSG-----------FYNNTTFHRVIPGFMIQGGGFTEQMQQ   66 (166)
T ss_dssp             CSCEEEEEET-----TEEEEEEECTTTCHHHHHHHHHHHHTT-----------TTTTCBEEEEETTTEEEESSBCTTCCB
T ss_pred             CCCEEEEEEC-----CeeEEEEEeCCCChHHHHHHHHHhhCC-----------ccccceeeEEEEEeecccCCcCCcccc
Confidence            4899999998     699999999999999999999999987           899999999999999999998755544


Q ss_pred             CCCcccCCCCCCCccccCCCCccEEEeeeCC-CCCCCceEEEecCCCCCCCC-----CCceeeEEEeChHHHHHHhcccC
Q 019054           82 GGESIYGLKFEDENFELKHERKGMLSMANAG-PNTNGSQFFITTTRTSHLDG-----KHVVFGRVIKGMGVVRSIEHVMT  155 (347)
Q Consensus        82 ~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~-~~~~~sqF~i~~~~~~~l~~-----~~~vfG~v~~g~~vl~~I~~~~~  155 (347)
                      +   .++.++++|.....|+.+|.|+|++.+ +++++|||||++++.|+||+     +|+|||+|++||+++++|+++++
T Consensus        67 ~---~~~~~~~~e~~~~~~~~rg~v~~~~~~~~~s~~sqFfI~~~~~~~ld~~~~~~~~tvfG~VveG~dvl~~I~~~~~  143 (166)
T d1v9ta_          67 K---KPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPT  143 (166)
T ss_dssp             C---CCCCCBCCCGGGSCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSCCCCCEEEEEEECHHHHHHHHTSCE
T ss_pred             c---CCCCCccccccccccccCCEEEEEeeecCCCcccccccccCCccccccccccCCEEEeeEEeccHHHHHHHHhCcc
Confidence            4   447789999887777788999998854 99999999999999988886     48999999999999999999988


Q ss_pred             CCC----CccccceEeccceecC
Q 019054          156 GDN----DCPIADVTITDCGEIP  174 (347)
Q Consensus       156 ~~~----~~P~~~v~I~~~g~~~  174 (347)
                      +..    ++|..+|+|.+|++++
T Consensus       144 ~~~~~~~~~P~~~v~I~~~~vlp  166 (166)
T d1v9ta_         144 HDVGPYQNVPSKPVVILSATVLP  166 (166)
T ss_dssp             EEETTEEEEESSCCBEEEEEECC
T ss_pred             cCCCCCCCccCCCeEEEEEEEcC
Confidence            653    4799999999999874

>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1e-37  Score=256.88  Aligned_cols=159  Identities=44%  Similarity=0.720  Sum_probs=136.0

Q ss_pred             eEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCC----CCCcccccCCeeEEEecCceEEeccCCCCCC
Q 019054            5 RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPN----TGVPLHYKGVRFHRVIKGFMIQGGDISAGDG   80 (347)
Q Consensus         5 ~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~----~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~   80 (347)
                      .+.|+|+     .|+|+||||++.||+||+||++||+++++.+..    ..+..||+|+.|||+++++++|||++. ..+
T Consensus         5 ~~ti~T~-----~G~I~ieL~~d~aP~tv~nF~~L~~~~~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~g~~~-~~~   78 (171)
T d1w74a_           5 TATLHTN-----RGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPT-GTG   78 (171)
T ss_dssp             EEEEEET-----TEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCSSTTEEEEEEETTTEEEECCTT-SSS
T ss_pred             EEEEEEC-----CEEEEEEEcCCCChHHHHHHHHHHhcCCccccccccccccCceECCeecccccCCceeEccccc-CCC
Confidence            4556655     799999999999999999999999988665321    345568999999999999999999986 333


Q ss_pred             CCCCcccCCCCCCC-ccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEE--eChHHHHHHhcccCCC
Q 019054           81 TGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVI--KGMGVVRSIEHVMTGD  157 (347)
Q Consensus        81 ~~~~~~~~~~~~~e-~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~--~g~~vl~~I~~~~~~~  157 (347)
                      .+++   ...+++| +..++|+++|+++|++.+||+++|||||++++.|+||++|+|||+|+  +||+++++|++++++.
T Consensus        79 ~~~~---~~~~~~e~~~~~~~~~~g~v~~~~~~~~s~~sqFfIt~~~~p~ld~~~tVFG~Vv~geGmdvl~~I~~~~~~~  155 (171)
T d1w74a_          79 RGGP---GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDG  155 (171)
T ss_dssp             SCCS---SCCBCCCCCTTCCSCSSSEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEECSHHHHHHHHHHHTSCBCT
T ss_pred             CCCc---ccccccccCCCcCCCCCEEEEEEecCCCCCCcceEeeccCCCccccccEEEEEEeccccHHHHHHHHcCCcCC
Confidence            3333   2335555 45789999999999999999999999999999999999999999999  4999999999999999


Q ss_pred             CCccccceEecccee
Q 019054          158 NDCPIADVTITDCGE  172 (347)
Q Consensus       158 ~~~P~~~v~I~~~g~  172 (347)
                      +++|..+|+|.++.+
T Consensus       156 ~~~P~~~i~I~~v~i  170 (171)
T d1w74a_         156 NDRPTDPVVIESITI  170 (171)
T ss_dssp             TSCBSSCCEEEEEEE
T ss_pred             CCccCCCcEEEEEEE
Confidence            999999999998754

>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-37  Score=254.68  Aligned_cols=151  Identities=46%  Similarity=0.655  Sum_probs=131.6

Q ss_pred             eEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCC
Q 019054            5 RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGE   84 (347)
Q Consensus         5 ~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~   84 (347)
                      .+.|+|+     .|+|+||||.+.||+||+||++||+.+           ||+|+.||||++++++|+|++......+..
T Consensus        11 ~a~~~T~-----~G~i~ieL~~~~aP~tv~nF~~l~~~g-----------~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~   74 (164)
T d2a2na1          11 SAIIHTS-----MGDIHTKLFPVECPKTVENFCVHSRNG-----------YYNGHTFHRIIKGFMIQTGDPTGTGMGGES   74 (164)
T ss_dssp             EEEEEET-----TEEEEEEECTTTCHHHHHHHHHHHHTT-----------TTTTCBCCEEETTTEEEECCTTSSSSCCCC
T ss_pred             EEEEEec-----eeEEEEEEcCCCChHHHHHHHHHHhCC-----------CcccceeeEEeeeeeEeecccccccCCCce
Confidence            4556655     799999999999999999999999987           899999999999999999998754433333


Q ss_pred             cccCCCCCC-CccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCC-CCccc
Q 019054           85 SIYGLKFED-ENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGD-NDCPI  162 (347)
Q Consensus        85 ~~~~~~~~~-e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~-~~~P~  162 (347)
                      .. +..+++ ++..++|+++|+++|++.++++++|||||++++.|+||++|+|||+|++||+++++|++++++. +++|.
T Consensus        75 ~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~sqFfI~~~~~~~ld~~~tVFG~V~~G~dvv~~I~~~~~~~~~~~P~  153 (164)
T d2a2na1          75 IW-GGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPY  153 (164)
T ss_dssp             TT-SSCBCCCCCTTCCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTTCCBS
T ss_pred             ee-ecccccccccccccCccceeehhhcCCCCCcccceecccCccccccceeEEEEecChHHHHHHHHcCCcCCCCCCcC
Confidence            33 334444 4568899999999999999999999999999999999999999999999999999999999975 47999


Q ss_pred             cceEecccee
Q 019054          163 ADVTITDCGE  172 (347)
Q Consensus       163 ~~v~I~~~g~  172 (347)
                      .+|.|.++.+
T Consensus       154 ~~V~I~~v~i  163 (164)
T d2a2na1         154 EDVSIINITV  163 (164)
T ss_dssp             SCCBEEEEEE
T ss_pred             CCcEEEEEEE
Confidence            9999988754

>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.4e-37  Score=252.67  Aligned_cols=149  Identities=32%  Similarity=0.523  Sum_probs=127.4

Q ss_pred             EEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCCc
Q 019054            6 CFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGES   85 (347)
Q Consensus         6 v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~   85 (347)
                      |.|+|+     .|+|+||||.+.||+||+||++||+.+           ||+||.||||+|+|++|+|++....+.+   
T Consensus         2 V~l~T~-----~G~i~ieL~~~~aP~t~~nF~~l~~~g-----------~Y~g~~fhrv~~~~~iq~G~~~~~~~~~---   62 (164)
T d1lopa_           2 VTFHTN-----HGDIVIKTFDDKAPETVKNFLDYCREG-----------FYNNTIFHRVINGFMIQGGGFEPGMKQK---   62 (164)
T ss_dssp             EEEEET-----TEEEEEEECTTTSHHHHHHHHHHHHTT-----------TTTTEECCEEETTTEEEESSEETTTEEC---
T ss_pred             EEEEeC-----CeEEEEEEcCCCCHHHHHHHHHHHHcc-----------CcCCceeeEEcCCceeeeeccccCCcCC---
Confidence            566666     799999999999999999999999987           8999999999999999999986544332   


Q ss_pred             ccCCCCCCCccccCCCCccEEEeeeC-CCCCCCceEEEecCCC--------CCCCCCCceeeEEEeChHHHHHHhcccCC
Q 019054           86 IYGLKFEDENFELKHERKGMLSMANA-GPNTNGSQFFITTTRT--------SHLDGKHVVFGRVIKGMGVVRSIEHVMTG  156 (347)
Q Consensus        86 ~~~~~~~~e~~~~~~~~~g~~~~~~~-~~~~~~sqF~i~~~~~--------~~l~~~~~vfG~v~~g~~vl~~I~~~~~~  156 (347)
                      .++.++++|.....++.+|.|+|++. ++++++|||||++.+.        |++|++|+|||+|++||+++++|+.++++
T Consensus        63 ~~~~~~~~e~~~~~~h~~g~l~~~~~~~~~~~~sqFfi~~~~~~~~~~~~~~~~~~~ytvFG~Vv~G~dvl~~I~~~~t~  142 (164)
T d1lopa_          63 ATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATG  142 (164)
T ss_dssp             CCCCCBCCCCCSSCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTSCCCEEEEEEECHHHHHHHHTSCEE
T ss_pred             ccCCCccccccccccceeeEEEEeccCCCCCccceeeeeccccccccccCCCcCCCceeecCEEeccHHHHHHHHhCCcC
Confidence            34777888866555666788899876 5999999999999765        78999999999999999999999999886


Q ss_pred             CC----CccccceEeccceec
Q 019054          157 DN----DCPIADVTITDCGEI  173 (347)
Q Consensus       157 ~~----~~P~~~v~I~~~g~~  173 (347)
                      ..    ++|..+|.|.++.+.
T Consensus       143 ~~~~~~~~P~~~v~I~~v~I~  163 (164)
T d1lopa_         143 RSGMHQDVPKEDVIIESVTVS  163 (164)
T ss_dssp             EETTEEEEESSCCEEEEEEEC
T ss_pred             CCCCcCCCcCCCeEEEEEEEe
Confidence            54    389999999987654

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=6.7e-23  Score=167.63  Aligned_cols=158  Identities=32%  Similarity=0.535  Sum_probs=141.3

Q ss_pred             CCCCCCCCCCCCCCCcchhHHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHH
Q 019054          187 DGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQI  266 (347)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (347)
                      .||.++++|++......+.....+.+..++..|+.+++.|+|.+|+..|.+||.+.+.....  ..........|....+
T Consensus         2 ~gd~~~d~p~d~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~--~~~~~~~~~~~~~~~~   79 (169)
T d1ihga1           2 SGDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAA--AEDADGAKLQPVALSC   79 (169)
T ss_dssp             SCCCSCSSGGGSSSCTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH--SCHHHHGGGHHHHHHH
T ss_pred             CCCCCCCCchhhHHCHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhh--hhhHHHHHhChhhHHH
Confidence            58999999999888778888888999999999999999999999999999999876543221  1223334578889999


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          267 FTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       267 ~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      +.|+|.|+.++|+|++|+.+|++||+++|+++++|+++|.+|..+|+|++|+.+|+++++++|+++.+...|..+.++++
T Consensus        80 ~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~  159 (169)
T d1ihga1          80 VLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK  159 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999987654

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.87  E-value=6.7e-22  Score=158.94  Aligned_cols=144  Identities=25%  Similarity=0.253  Sum_probs=126.6

Q ss_pred             CcchhHHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCCh
Q 019054          201 TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL  280 (347)
Q Consensus       201 ~~~~~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~  280 (347)
                      +..+.++..+.+..++..|+.+|+.|+|.+|+..|++||+++......  .+........+....++.|+|.||+++++|
T Consensus         6 ~~~~~~e~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~--~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~   83 (153)
T d2fbna1           6 YDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEW--DDQILLDKKKNIEISCNLNLATCYNKNKDY   83 (153)
T ss_dssp             GGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTC--CCHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             hhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhh--hhHHHHHhhhhHHHHHHhhHHHHHHHhccc
Confidence            455677788899999999999999999999999999999976543221  222233345666778999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          281 KGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       281 ~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      ++|+.+|++||+++|.++++|+++|.+|..+|+|++|+.+|+++++++|+|..+...+..+.++++
T Consensus        84 ~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~  149 (153)
T d2fbna1          84 PKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK  149 (153)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999988775

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3.3e-21  Score=157.64  Aligned_cols=142  Identities=26%  Similarity=0.390  Sum_probs=126.8

Q ss_pred             cchhHHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChH
Q 019054          202 PNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLK  281 (347)
Q Consensus       202 ~~~~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~  281 (347)
                      ..+..+.++.+..++..|+.+|+.|+|++|+..|++||++++..   .................++.|+|.||+++|+|+
T Consensus         3 ~~~~~ek~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~---~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~   79 (170)
T d1p5qa1           3 EMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYE---SSFSNEEAQKAQALRLASHLNLAMCHLKLQAFS   79 (170)
T ss_dssp             GCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC---CCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc---cccchHHHhhhchhHHHHHHHHHHHHHhhhhcc
Confidence            45667778889999999999999999999999999999976543   223344555677788889999999999999999


Q ss_pred             HHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          282 GALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       282 ~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      +|+.++++||.++|+++++++++|.+|..+|+|++|+.+|+++++++|+|+.+...+..+.++++
T Consensus        80 ~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  144 (170)
T d1p5qa1          80 AAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIR  144 (170)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHH
T ss_pred             cccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999876653

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.86  E-value=4.3e-21  Score=156.60  Aligned_cols=142  Identities=24%  Similarity=0.354  Sum_probs=127.1

Q ss_pred             CcchhHHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCCh
Q 019054          201 TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL  280 (347)
Q Consensus       201 ~~~~~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~  280 (347)
                      +..+..+.++.+..++..|+.+|+.|+|.+|+..|.+||.+++..   ............+....++.|+|.||.++++|
T Consensus         4 ~~m~~~E~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~---~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~   80 (168)
T d1kt1a1           4 WEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEME---YGLSEKESKASESFLLAAFLNLAMCYLKLREY   80 (168)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC---CSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---hccchhhhhhcchhHHHHHHhHHHHHHHhhhc
Confidence            455667778899999999999999999999999999999977543   33334445567788889999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054          281 KGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV  345 (347)
Q Consensus       281 ~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  345 (347)
                      ++|+.+|++++.++|.+.++++++|.+|..+|+|++|+.+|+++++++|+++.+...+..+...+
T Consensus        81 ~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  145 (168)
T d1kt1a1          81 TKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA  145 (168)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999887665

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=4.6e-21  Score=146.80  Aligned_cols=115  Identities=27%  Similarity=0.306  Sum_probs=111.4

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+..++..|+.+++.|+|++|+..|.++|+                  .+|..+.+|.++|.||.++|++++|+.+|+++
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~------------------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   63 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIK------------------LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKT   63 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------cCCcchhhhhcccccccccccccccchhhhhH
Confidence            467789999999999999999999999999                  89999999999999999999999999999999


Q ss_pred             hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 019054          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK  343 (347)
Q Consensus       291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  343 (347)
                      ++++|+++.+|+++|.++..+|++++|+.+|+++++++|+++.+...+..++.
T Consensus        64 l~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          64 VDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHhccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999998875

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=5.7e-20  Score=148.37  Aligned_cols=119  Identities=24%  Similarity=0.372  Sum_probs=113.5

Q ss_pred             HHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHH
Q 019054          208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDT  287 (347)
Q Consensus       208 ~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~  287 (347)
                      .++.|..++..|+.+|+.|+|++|+..|+++++                  ++|....+|.++|.|++.+|++++|+.+|
T Consensus         6 ~l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~~~~~~A~~~~   67 (159)
T d1a17a_           6 ALKRAEELKTQANDYFKAKDYENAIKFYSQAIE------------------LNPSNAIYYGNRSLAYLRTECYGYALGDA   67 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHhhhccc------------------cchhhhhhhhhhHHHHHhccccchHHHHH
Confidence            456889999999999999999999999999999                  89999999999999999999999999999


Q ss_pred             HHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054          288 EFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (347)
Q Consensus       288 ~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  344 (347)
                      +++|+++|.++++|+++|.++..+|++++|+.+|+++++++|+++.+...+..+...
T Consensus        68 ~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~  124 (159)
T d1a17a_          68 TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI  124 (159)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998888777554

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=3.9e-19  Score=148.10  Aligned_cols=104  Identities=25%  Similarity=0.366  Sum_probs=99.8

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .|..+++.|+.+|+.|+|++|+..|++||.                  .+|.++.+|+|+|.||.++|+|++|+.+|++|
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~------------------~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~a   64 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAIT------------------RNPLVAVYYTNRALCYLKMQQPEQALADCRRA   64 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHH
Confidence            467899999999999999999999999999                  88999999999999999999999999999999


Q ss_pred             hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 019054          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG  332 (347)
Q Consensus       291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  332 (347)
                      +.++|+++++|+++|.+|..+|+|++|+.+|++|++++|++.
T Consensus        65 l~l~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          65 LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             TTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence            999999999999999999999999999999999999988533

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=4.9e-18  Score=131.78  Aligned_cols=117  Identities=29%  Similarity=0.364  Sum_probs=108.0

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .|..++++|+.+|..|+|++|+.+|+++|+                  ++|....++.|+|.||.++|+|++|+.+|++|
T Consensus         3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~------------------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   64 (128)
T d1elra_           3 QALKEKELGNDAYKKKDFDTALKHYDKAKE------------------LDPTNMTYITNQAAVYFEKGDYNKCRELCEKA   64 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCcccHHHHHhHHHHHHHcCchHHHHHHHHHH
Confidence            678899999999999999999999999999                  88999999999999999999999999999999


Q ss_pred             hhcCCCCh-------hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          291 MRDGDDNV-------KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       291 l~~~p~~~-------~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      |.++|.+.       ++|+++|.++..++++++|+.+|++++.++| ++++...+..+++.++
T Consensus        65 l~l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~-~~~~~~~l~~~~k~lk  126 (128)
T d1elra_          65 IEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK  126 (128)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred             HHhCcccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHh
Confidence            99998774       5788899999999999999999999999987 5778888888887764

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=7.4e-17  Score=123.73  Aligned_cols=113  Identities=14%  Similarity=0.171  Sum_probs=102.8

Q ss_pred             HHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcC---ChHHHHHHHHHHhh
Q 019054          216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG---DLKGALLDTEFAMR  292 (347)
Q Consensus       216 ~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~---~~~~A~~~~~~al~  292 (347)
                      .++++.+...+++++|.+.|+++|.                  .+|..+.+++|+|.|+++.+   ++++|+..+++++.
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~------------------~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~   64 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKA------------------AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP   64 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH------------------HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHh------------------hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence            3566778899999999999999999                  99999999999999998754   56679999999999


Q ss_pred             cCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          293 DGDDN--VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       293 ~~p~~--~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      .+|.+  +.+++.+|.+|..+|+|++|+++|+++++++|++..+...+..++++++
T Consensus        65 ~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~  120 (122)
T d1nzna_          65 KGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK  120 (122)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             ccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHc
Confidence            98866  4599999999999999999999999999999999999999999988765

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=7.2e-16  Score=132.87  Aligned_cols=116  Identities=15%  Similarity=0.065  Sum_probs=108.8

Q ss_pred             hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (347)
Q Consensus       210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~  289 (347)
                      ..+..+..+|..+++.|+|++|+..|+++|+                  ++|..+.+|+++|.+|.++|++++|+..|++
T Consensus        35 ~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~------------------l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~   96 (259)
T d1xnfa_          35 ERAQLLYERGVLYDSLGLRALARNDFSQALA------------------IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDS   96 (259)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhc------------------cCCCCHHHHhhhchHHHHHHHHHHhhhhhhH
Confidence            3678899999999999999999999999999                  8999999999999999999999999999999


Q ss_pred             HhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 019054          290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK  343 (347)
Q Consensus       290 al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  343 (347)
                      +++++|+++.+++.+|.+|..+|++++|+..|+++++++|.+......+..+..
T Consensus        97 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  150 (259)
T d1xnfa_          97 VLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQ  150 (259)
T ss_dssp             HHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999887666655443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.59  E-value=2.1e-15  Score=119.20  Aligned_cols=110  Identities=17%  Similarity=0.182  Sum_probs=100.1

Q ss_pred             cCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHc----------CChHHHHHHH
Q 019054          218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL----------GDLKGALLDT  287 (347)
Q Consensus       218 ~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l----------~~~~~A~~~~  287 (347)
                      .+..+-+.+.|++|+..|+++++                  .+|.++.++.++|.++..+          +.+++|+..|
T Consensus         3 ~~~~~~r~~~fe~A~~~~e~al~------------------~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~   64 (145)
T d1zu2a1           3 TETEFDRILLFEQIRQDAENTYK------------------SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKF   64 (145)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHccHHHHHHHHHHHHh------------------hCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Confidence            45667788999999999999999                  9999999999999999865          4568999999


Q ss_pred             HHHhhcCCCChhHHHHHHHHHHhcCC-----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054          288 EFAMRDGDDNVKALFRQGQAYMALND-----------VDAAVESFEKALKLEPNDGGIKKELAVAKKKV  345 (347)
Q Consensus       288 ~~al~~~p~~~~a~~~~g~~~~~~~~-----------~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  345 (347)
                      ++|++++|+++.+|+++|.+|..+|+           |++|+++|+++++++|++..++..|..+.+..
T Consensus        65 ~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~  133 (145)
T d1zu2a1          65 EEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAP  133 (145)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHH
T ss_pred             HHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999988754           79999999999999999999999999887664

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=6.6e-15  Score=121.96  Aligned_cols=100  Identities=20%  Similarity=0.179  Sum_probs=90.4

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+..+++.|..++..|+|++|++.|.++..                     ..+.+++|+|.||..+|++++|+.+|++|
T Consensus         4 ~~~~l~~~g~~~~~~~d~~~Al~~~~~i~~---------------------~~~~~~~nlG~~~~~~g~~~~A~~~~~kA   62 (192)
T d1hh8a_           4 EAISLWNEGVLAADKKDWKGALDAFSAVQD---------------------PHSRICFNIGCMYTILKNMTEAEKAFTRS   62 (192)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSSS---------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhcCC---------------------CCHHHHHHHHHHHHHcCCchhHHHHHHHH
Confidence            466788899999999999999999975422                     23467999999999999999999999999


Q ss_pred             hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 019054          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND  331 (347)
Q Consensus       291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  331 (347)
                      |+++|+++.+|+++|.+|..+|+|++|+.+|++|++..|.+
T Consensus        63 l~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n  103 (192)
T d1hh8a_          63 INRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN  103 (192)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC
T ss_pred             HHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccC
Confidence            99999999999999999999999999999999999987654

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.55  E-value=4.5e-15  Score=111.91  Aligned_cols=93  Identities=10%  Similarity=0.003  Sum_probs=89.7

Q ss_pred             HHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC
Q 019054          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (347)
Q Consensus       215 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~  294 (347)
                      ....|..+++.|++.+|+..|+++++                  ..|..+.+|.++|.++.+++++++|+.++++|++++
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~   80 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQ------------------KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD   80 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH------------------HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcc------------------cccccchhhhhhhhhhhhhhhHHHhhcccccccccc
Confidence            46789999999999999999999999                  899999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 019054          295 DDNVKALFRQGQAYMALNDVDAAVESFEKAL  325 (347)
Q Consensus       295 p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al  325 (347)
                      |++..+++.+|.+|..+|++++|++.+++.+
T Consensus        81 p~~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          81 PKDIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            9999999999999999999999999999976

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.55  E-value=2.5e-15  Score=120.25  Aligned_cols=115  Identities=12%  Similarity=0.077  Sum_probs=93.8

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+..+...|+.++..|+|++|+..|++||++.+....      .......+....+|.|+|.||.++|+|++|+.+++++
T Consensus         8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~------~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~a   81 (156)
T d2hr2a1           8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPP------EEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKA   81 (156)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCT------TSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhh------hhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhh
Confidence            3445566699999999999999999999996554321      1112244566789999999999999999999999999


Q ss_pred             hhcCCC-----------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 019054          291 MRDGDD-----------NVKALFRQGQAYMALNDVDAAVESFEKALKLEPND  331 (347)
Q Consensus       291 l~~~p~-----------~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  331 (347)
                      |.+.|.           ...+++++|.+|..+|++++|+.+|++|+++.|..
T Consensus        82 l~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          82 LHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             hhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence            977542           24589999999999999999999999999997643

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=4e-14  Score=126.34  Aligned_cols=119  Identities=11%  Similarity=0.061  Sum_probs=72.2

Q ss_pred             HhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCC-hHHHHHHH
Q 019054          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD-LKGALLDT  287 (347)
Q Consensus       209 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~-~~~A~~~~  287 (347)
                      .+.+.++..+|..+.+.+.+++|+..|++||+                  ++|....+|+++|.++..+++ +++|+.++
T Consensus        40 p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~------------------lnP~~~~a~~~r~~~l~~l~~~~~eal~~~  101 (315)
T d2h6fa1          40 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIE------------------LNAANYTVWHFRRVLLKSLQKDLHEEMNYI  101 (315)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH------------------HCCCChHHHHHHHHHHHHhCcCHHHHHHHH
Confidence            34556666677777777777777777777777                  555555555555555555543 55555555


Q ss_pred             HHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054          288 EFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV  345 (347)
Q Consensus       288 ~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  345 (347)
                      +++++++|++..+|+.+|.++..+|++++|+.+|+++++++|.+..++..++.+...+
T Consensus       102 ~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~  159 (315)
T d2h6fa1         102 TAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEF  159 (315)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHH
Confidence            5555555555555555555555555555555555555555555555555555554443

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=4.8e-14  Score=126.74  Aligned_cols=88  Identities=14%  Similarity=0.141  Sum_probs=83.5

Q ss_pred             HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 019054          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (347)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l  338 (347)
                      ..|....++..+|.++.++|++++|+..++++++++|+++.+++.+|.+|..+|++++|+..|++|++++|+++.++..|
T Consensus       300 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l  379 (388)
T d1w3ba_         300 LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM  379 (388)
T ss_dssp             HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             cCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            56677788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhc
Q 019054          339 AVAKKKVS  346 (347)
Q Consensus       339 ~~~~~~~~  346 (347)
                      +.+..+++
T Consensus       380 g~~~~~~~  387 (388)
T d1w3ba_         380 GNTLKEMQ  387 (388)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHcC
Confidence            99988765

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=9.5e-14  Score=114.83  Aligned_cols=113  Identities=12%  Similarity=0.086  Sum_probs=99.4

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  291 (347)
                      +..++++|..++..|+|++|+..|++||+                  ++|..+.+|+++|.||.++|+|++|+.+|++|+
T Consensus        36 ~~~~~nlG~~~~~~g~~~~A~~~~~kAl~------------------ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl   97 (192)
T d1hh8a_          36 SRICFNIGCMYTILKNMTEAEKAFTRSIN------------------RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEAL   97 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCchhHHHHHHHHHH------------------HhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            45688999999999999999999999999                  999999999999999999999999999999999


Q ss_pred             hcCCCC----------------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHH
Q 019054          292 RDGDDN----------------VKALFRQGQAYMALNDVDAAVESFEKALKLEPND--GGIKKELAVAK  342 (347)
Q Consensus       292 ~~~p~~----------------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~--~~~~~~l~~~~  342 (347)
                      ...+.+                .++++++|.++..+|++++|++.|++|+++.|..  ..+...+....
T Consensus        98 ~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~~~Al~~~~  166 (192)
T d1hh8a_          98 IQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVW  166 (192)
T ss_dssp             HTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHHH
T ss_pred             HhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence            865543                4789999999999999999999999999998863  34444454443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=4.1e-14  Score=126.27  Aligned_cols=119  Identities=9%  Similarity=-0.020  Sum_probs=107.3

Q ss_pred             HHhhHHHHHHcCccccchh-hHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHH
Q 019054          208 WMNAVDSIKVFGNEHYKKQ-DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLD  286 (347)
Q Consensus       208 ~~~~a~~~~~~g~~~~~~g-~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~  286 (347)
                      .++.+.++...|.++...+ ++++|+..|.++++                  .+|....+|.++|.++.++|++++|+.+
T Consensus        73 nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~------------------~~p~~~~a~~~~~~~~~~l~~~~eAl~~  134 (315)
T d2h6fa1          73 NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE------------------EQPKNYQVWHHRRVLVEWLRDPSQELEF  134 (315)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred             CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHH------------------HHHhhhhHHHHHhHHHHhhccHHHHHHH
Confidence            3455677899999988876 59999999999999                  8999999999999999999999999999


Q ss_pred             HHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054          287 TEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (347)
Q Consensus       287 ~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  344 (347)
                      ++++++++|++..+|+.+|.++..++++++|+.+|+++++++|.+..++..++.+...
T Consensus       135 ~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~  192 (315)
T d2h6fa1         135 IADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN  192 (315)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999988887776543

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=8e-14  Score=123.76  Aligned_cols=106  Identities=18%  Similarity=0.207  Sum_probs=97.5

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  291 (347)
                      +..+..+|..+...|++++|+..|++++.                  ..|....++.++|.++.++|++++|+..|++++
T Consensus       172 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  233 (323)
T d1fcha_         172 PDVQCGLGVLFNLSGEYDKAVDCFTAALS------------------VRPNDYLLWNKLGATLANGNQSEEAVAAYRRAL  233 (323)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cccchhhHHHHHHHHHHhhhhcccccccc------------------cccccccchhhhhhcccccccchhHHHHHHHHH
Confidence            44567889999999999999999999999                  888889999999999999999999999999999


Q ss_pred             hcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 019054          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIK  335 (347)
Q Consensus       292 ~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~  335 (347)
                      +++|+++.+|+.+|.+|..+|++++|+..|++|++++|++..+.
T Consensus       234 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~  277 (323)
T d1fcha_         234 ELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPR  277 (323)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC----
T ss_pred             HHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhh
Confidence            99999999999999999999999999999999999999877643

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=4.6e-13  Score=114.90  Aligned_cols=115  Identities=17%  Similarity=0.082  Sum_probs=101.3

Q ss_pred             cCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC
Q 019054          218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN  297 (347)
Q Consensus       218 ~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~  297 (347)
                      ++..+....+++.|+..+.+++....              ..++..+.+++++|.+|.++|++++|+.+|++||+++|++
T Consensus         5 ~~~~~~~~~~~e~al~~~~e~l~~~~--------------~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~   70 (259)
T d1xnfa_           5 LAVPLQPTLQQEVILARMEQILASRA--------------LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM   70 (259)
T ss_dssp             SCCCCCCCHHHHHHHHHHHHHHTSSC--------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC
T ss_pred             hhhcccccHHHHHHHHHHHHHHHhhh--------------cCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC
Confidence            34556667788999999999886211              1356678899999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          298 VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       298 ~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      +.+|+++|.+|..+|++++|+.+|+++++++|.+..++..++.+...++
T Consensus        71 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g  119 (259)
T d1xnfa_          71 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGG  119 (259)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTT
T ss_pred             HHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999998876654

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=9.3e-13  Score=95.77  Aligned_cols=84  Identities=20%  Similarity=0.133  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC-------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 019054          264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN-------VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKK  336 (347)
Q Consensus       264 ~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~-------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~  336 (347)
                      +.-++++|.++.+.|+|++|+.++++|+++.|.+       +.++.++|.++..+|++++|+..|+++++++|+++.+..
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            3457899999999999999999999999886543       678999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcC
Q 019054          337 ELAVAKKKVSR  347 (347)
Q Consensus       337 ~l~~~~~~~~~  347 (347)
                      ++..+++.+++
T Consensus        85 Nl~~~~~~l~k   95 (95)
T d1tjca_          85 NLKYFEYIMAK   95 (95)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHhCc
Confidence            99999988764

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.5e-12  Score=94.64  Aligned_cols=89  Identities=21%  Similarity=0.136  Sum_probs=75.5

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  291 (347)
                      +...+++|..+++.|+|.+|+.+|++|+++.+..           ....+....++.|+|.|+.++|++++|+.++++||
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~-----------~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL   73 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEG-----------EISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL   73 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-----------CCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhh-----------hccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHH
Confidence            5678899999999999999999999999954321           01123456899999999999999999999999999


Q ss_pred             hcCCCChhHHHHHHHHHHhc
Q 019054          292 RDGDDNVKALFRQGQAYMAL  311 (347)
Q Consensus       292 ~~~p~~~~a~~~~g~~~~~~  311 (347)
                      +++|++..++.+++.....+
T Consensus        74 ~l~P~~~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          74 ELDPEHQRANGNLKYFEYIM   93 (95)
T ss_dssp             HHCTTCHHHHHHHHHHHHHH
T ss_pred             HhCcCCHHHHHHHHHHHHHh
Confidence            99999999999998766544

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.6e-12  Score=115.13  Aligned_cols=118  Identities=17%  Similarity=0.172  Sum_probs=109.9

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+..+..+|..+++.|++++|+..|+++++                  ..|....++.++|.++..++++++|+..++++
T Consensus       236 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  297 (388)
T d1w3ba_         236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIE------------------LQPHFPDAYCNLANALKEKGSVAEAEDCYNTA  297 (388)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence            456678889999999999999999999998                  77888899999999999999999999999999


Q ss_pred             hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      +...|.+..+++.+|.++..+|++++|+..|+++++++|++..++..++.+...++
T Consensus       298 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  353 (388)
T d1w3ba_         298 LRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG  353 (388)
T ss_dssp             HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTT
T ss_pred             hccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999998876654

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=3e-12  Score=113.29  Aligned_cols=100  Identities=13%  Similarity=0.059  Sum_probs=95.7

Q ss_pred             HHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC
Q 019054          216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD  295 (347)
Q Consensus       216 ~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p  295 (347)
                      +..|..+++.|+|++|+..|+++++                  .+|....+|.++|.++..+|++++|+..++++++++|
T Consensus        23 ~~~g~~~~~~g~~~~A~~~~~~al~------------------~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p   84 (323)
T d1fcha_          23 FEEGLRRLQEGDLPNAVLLFEAAVQ------------------QDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP   84 (323)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH------------------SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc
Confidence            5689999999999999999999999                  8899999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 019054          296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG  333 (347)
Q Consensus       296 ~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~  333 (347)
                      ++..+++.+|.+|..+|++++|++.+++++.++|....
T Consensus        85 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~  122 (323)
T d1fcha_          85 DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAH  122 (323)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGG
T ss_pred             ccccccccccccccccccccccccchhhHHHhccchHH
Confidence            99999999999999999999999999999999997544

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.29  E-value=1.3e-11  Score=92.33  Aligned_cols=82  Identities=21%  Similarity=0.189  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (347)
Q Consensus       265 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  344 (347)
                      ...+++|.++++.|++++|+..++++++++|+++.+|+.+|.++..++++++|+.+|+++++++|.+..++..|+.+...
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~   96 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   96 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHH
Confidence            34578999999999999999999999999999999999999999999999999999999999999999999999988766


Q ss_pred             hc
Q 019054          345 VS  346 (347)
Q Consensus       345 ~~  346 (347)
                      ++
T Consensus        97 ~g   98 (112)
T d1hxia_          97 EH   98 (112)
T ss_dssp             HH
T ss_pred             CC
Confidence            53

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=2.7e-11  Score=91.38  Aligned_cols=80  Identities=21%  Similarity=0.172  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          267 FTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       267 ~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      +.+.|..+++.|+|++|+..|+++|+++|+++.+|+.+|.+|..+|++++|+.+|+++++++|++..++..++.+...++
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~   85 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN   85 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999887665

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=1.6e-11  Score=100.91  Aligned_cols=83  Identities=11%  Similarity=0.031  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (347)
Q Consensus       265 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  344 (347)
                      ..+.+.|.++++.|+|++|+..|++||.++|.++.+|+++|.+|..+|+|++|+.+|++|++++|++..++..++.+...
T Consensus         5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~   84 (201)
T d2c2la1           5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE   84 (201)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999877


Q ss_pred             hcC
Q 019054          345 VSR  347 (347)
Q Consensus       345 ~~~  347 (347)
                      +++
T Consensus        85 l~~   87 (201)
T d2c2la1          85 MES   87 (201)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            653

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=3e-11  Score=96.13  Aligned_cols=84  Identities=13%  Similarity=0.042  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (347)
Q Consensus       263 ~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  342 (347)
                      .+..+...|..|++.|+|++|+.+|++|++++|+++.+|+++|.+|..+|++++|+.+|+++++++|++..++..++.+.
T Consensus         9 ~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~   88 (159)
T d1a17a_           9 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN   88 (159)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHH
Confidence            34557788999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             HHhc
Q 019054          343 KKVS  346 (347)
Q Consensus       343 ~~~~  346 (347)
                      ..++
T Consensus        89 ~~~g   92 (159)
T d1a17a_          89 MALG   92 (159)
T ss_dssp             HHTT
T ss_pred             HHcC
Confidence            7665

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.24  E-value=6.7e-11  Score=96.12  Aligned_cols=121  Identities=15%  Similarity=0.096  Sum_probs=102.2

Q ss_pred             hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhcccc----CCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHH
Q 019054          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEK----EGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALL  285 (347)
Q Consensus       210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~  285 (347)
                      .....+...|+.+...|++++|+..|.+|+.+.+--...    ..-.......+.+....++.+++.++.++|++++|+.
T Consensus         9 ~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~   88 (179)
T d2ff4a2           9 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIA   88 (179)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHH
Confidence            356788999999999999999999999999975421110    1111233456788889999999999999999999999


Q ss_pred             HHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH-------HhhCCC
Q 019054          286 DTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKA-------LKLEPN  330 (347)
Q Consensus       286 ~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~a-------l~l~P~  330 (347)
                      +++++++++|.+..+|..++.+|..+|++.+|++.|+++       +-++|.
T Consensus        89 ~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~  140 (179)
T d2ff4a2          89 ELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG  140 (179)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence            999999999999999999999999999999999999998       446664

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=2e-11  Score=93.63  Aligned_cols=79  Identities=19%  Similarity=0.131  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054          264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (347)
Q Consensus       264 ~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  342 (347)
                      +..+.++|.+++..|+|++|+.+|+++|+++|+++.+++++|.+|..+|+|++|+.+|+++++++|.+...+..++.+.
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~   82 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            3457799999999999999999999999999999999999999999999999999999999999998877655555443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=9.4e-11  Score=110.67  Aligned_cols=114  Identities=8%  Similarity=-0.086  Sum_probs=83.9

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  291 (347)
                      +..+..+|..+.+.+++.+|+..|.+++.                  ..+  ..++.++|.++..+++|++|+.+|.+|+
T Consensus       120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~------------------~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~  179 (497)
T d1ya0a1         120 RVKSSQLGIISNKQTHTSAIVKPQSSSCS------------------YIC--QHCLVHLGDIARYRNQTSQAESYYRHAA  179 (497)
T ss_dssp             -----------------------CCHHHH------------------HHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHhCCCHHHHHHHHHHHhC------------------CCH--HHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            44566778888888888888888888877                  443  3688999999999999999999999999


Q ss_pred             hcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV  345 (347)
Q Consensus       292 ~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  345 (347)
                      .++|++..+|+.+|.++...|++.+|+..|.+|+.++|..+.++.+|..+..+.
T Consensus       180 ~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~  233 (497)
T d1ya0a1         180 QLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA  233 (497)
T ss_dssp             HHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred             HHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999876554

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.09  E-value=9.8e-11  Score=94.08  Aligned_cols=92  Identities=13%  Similarity=0.078  Sum_probs=84.0

Q ss_pred             HhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 019054          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (347)
Q Consensus       209 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~  288 (347)
                      ...+..+.++|..+++.|+|++|+..|+++|+                  ++|..+.+|+++|.+|..+|++++|+.+++
T Consensus        74 ~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~------------------~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~  135 (169)
T d1ihga1          74 PVALSCVLNIGACKLKMSDWQGAVDSCLEALE------------------IDPSNTKALYRRAQGWQGLKEYDQALADLK  135 (169)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------------------TCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhhcccchhhhhhhhhhh------------------hhhhhhhHHHhHHHHHHHccCHHHHHHHHH
Confidence            34566788899999999999999999999999                  899999999999999999999999999999


Q ss_pred             HHhhcCCCChhHHHHHHHHHHhcCCHHHHH
Q 019054          289 FAMRDGDDNVKALFRQGQAYMALNDVDAAV  318 (347)
Q Consensus       289 ~al~~~p~~~~a~~~~g~~~~~~~~~~~A~  318 (347)
                      +|++++|++..++..++.++..+..+.++.
T Consensus       136 ~al~l~p~n~~~~~~l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         136 KAQEIAPEDKAIQAELLKVKQKIKAQKDKE  165 (169)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999988777666654

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.04  E-value=3.4e-10  Score=90.84  Aligned_cols=97  Identities=13%  Similarity=0.120  Sum_probs=85.0

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+..+.++|.++++.++|.+|+..|++++.                  ++|.+..+++++|.|+..+|+|++|+.+|+++
T Consensus        63 ~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~------------------l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~a  124 (168)
T d1kt1a1          63 LLAAFLNLAMCYLKLREYTKAVECCDKALG------------------LDSANEKGLYRRGEAQLLMNEFESAKGDFEKV  124 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHhhhcccchhhhhhhhh------------------cccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            345677899999999999999999999999                  89999999999999999999999999999999


Q ss_pred             hhcCCCChhHHHHHHHHHHhcCCHHH-HHHHHHHHH
Q 019054          291 MRDGDDNVKALFRQGQAYMALNDVDA-AVESFEKAL  325 (347)
Q Consensus       291 l~~~p~~~~a~~~~g~~~~~~~~~~~-A~~~~~~al  325 (347)
                      +.++|++..++..++.+...++.+.+ ..+.|.+.+
T Consensus       125 l~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f  160 (168)
T d1kt1a1         125 LEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMF  160 (168)
T ss_dssp             HHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            99999999999999999888776654 334444333

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=4.2e-10  Score=90.51  Aligned_cols=89  Identities=18%  Similarity=0.120  Sum_probs=82.5

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  291 (347)
                      +..+.++|.++++.|+|++|+..++++|+                  ++|.++.+++++|.||..+|+|++|+.+|++|+
T Consensus        62 ~~~~~nla~~y~k~~~~~~A~~~~~~al~------------------~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al  123 (170)
T d1p5qa1          62 LASHLNLAMCHLKLQAFSAAIESCNKALE------------------LDSNNEKGLSRRGEAHLAVNDFELARADFQKVL  123 (170)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcccccchhhhhhh------------------ccccchhhhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            44567899999999999999999999999                  899999999999999999999999999999999


Q ss_pred             hcCCCChhHHHHHHHHHHhcCCHHHHH
Q 019054          292 RDGDDNVKALFRQGQAYMALNDVDAAV  318 (347)
Q Consensus       292 ~~~p~~~~a~~~~g~~~~~~~~~~~A~  318 (347)
                      +++|++..+...++.++..++++.+..
T Consensus       124 ~l~P~n~~~~~~l~~~~~~~~~~~~~e  150 (170)
T d1p5qa1         124 QLYPNNKAAKTQLAVCQQRIRRQLARE  150 (170)
T ss_dssp             HHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988887776654

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.97  E-value=3.3e-10  Score=89.46  Aligned_cols=83  Identities=16%  Similarity=0.113  Sum_probs=76.6

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  291 (347)
                      +..+.++|..+++.|+|++|+..|+++|+                  .+|.+..+|+++|.++..+|++++|+.+|++++
T Consensus        67 ~~~~~Nla~~~~~l~~~~~Al~~~~~al~------------------~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al  128 (153)
T d2fbna1          67 ISCNLNLATCYNKNKDYPKAIDHASKVLK------------------IDKNNVKALYKLGVANMYFGFLEEAKENLYKAA  128 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHhcccchhhhhhhcccc------------------ccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHH
Confidence            45677899999999999999999999999                  899999999999999999999999999999999


Q ss_pred             hcCCCChhHHHHHHHHHHhcC
Q 019054          292 RDGDDNVKALFRQGQAYMALN  312 (347)
Q Consensus       292 ~~~p~~~~a~~~~g~~~~~~~  312 (347)
                      +++|++..+...++.+...++
T Consensus       129 ~l~P~n~~~~~~l~~~~~kl~  149 (153)
T d2fbna1         129 SLNPNNLDIRNSYELCVNKLK  149 (153)
T ss_dssp             HHSTTCHHHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHHH
Confidence            999999999888888766543

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.95  E-value=3.4e-09  Score=94.09  Aligned_cols=117  Identities=9%  Similarity=-0.018  Sum_probs=106.5

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCC--hHHHHHHHHH
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD--LKGALLDTEF  289 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~--~~~A~~~~~~  289 (347)
                      ...+...+..+...+++.+|+..|+++++                  ..|....++.++|.++..+++  +++|+..+++
T Consensus        73 l~~l~~~~~~~~~~~~~~~al~~~~~~l~------------------~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  134 (334)
T d1dcea1          73 LQHLETEKSPEESAALVKAELGFLESCLR------------------VNPKSYGTWHHRCWLLSRLPEPNWARELELCAR  134 (334)
T ss_dssp             HHHHHTTSCHHHHHHHHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHH
T ss_pred             HHHHhhhcchHHHHHHHHHHHHHHHHHHH------------------hCCCcHHHHHHhhHHHHHhccccHHHHHHHHHH
Confidence            35567778888999999999999999999                  899999999999999988875  8999999999


Q ss_pred             HhhcCCCChhHH-HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054          290 AMRDGDDNVKAL-FRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS  346 (347)
Q Consensus       290 al~~~p~~~~a~-~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (347)
                      +++++|.+..++ +.+|.++...+++++|+..++++++++|.+..++..++.+...++
T Consensus       135 al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~  192 (334)
T d1dcea1         135 FLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH  192 (334)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHS
T ss_pred             HHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence            999999998886 577899999999999999999999999999999999999887764

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=4.9e-10  Score=84.91  Aligned_cols=88  Identities=9%  Similarity=-0.034  Sum_probs=73.5

Q ss_pred             HHhhHHHHHHcCccccc---hhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHH
Q 019054          208 WMNAVDSIKVFGNEHYK---KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGAL  284 (347)
Q Consensus       208 ~~~~a~~~~~~g~~~~~---~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~  284 (347)
                      .+..+..+++.|..+++   .+++++|+..|++++..-                ..+....+++++|.+|.++|+|++|+
T Consensus        29 ~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~----------------~~~~~~~~~~~Lg~~y~~~g~~~~A~   92 (122)
T d1nzna_          29 GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG----------------SKEEQRDYVFYLAVGNYRLKEYEKAL   92 (122)
T ss_dssp             SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS----------------CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcc----------------CCchHHHHHHHHHHHHHHHhhhHHHH
Confidence            34456788999999975   678889999999999710                23445679999999999999999999


Q ss_pred             HHHHHHhhcCCCChhHHHHHHHHHHhc
Q 019054          285 LDTEFAMRDGDDNVKALFRQGQAYMAL  311 (347)
Q Consensus       285 ~~~~~al~~~p~~~~a~~~~g~~~~~~  311 (347)
                      .+++++|+++|++.+|...++.+...+
T Consensus        93 ~~~~~aL~~~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          93 KYVRGLLQTEPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence            999999999999999999888776553

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.91  E-value=2.4e-09  Score=93.42  Aligned_cols=108  Identities=17%  Similarity=0.146  Sum_probs=87.2

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+..+...|+.+...++|++|++.|.+|+.+....            ...+....+|.++|.||.+++++++|+..++++
T Consensus        36 Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~------------~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a  103 (290)
T d1qqea_          36 AADLCVQAATIYRLRKELNLAGDSFLKAADYQKKA------------GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENA  103 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc------------CCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHh
Confidence            46678888999999999999999999999854322            123456788999999999999999999999999


Q ss_pred             hhcCCCC------hhHHHHHHHHHHh-cCCHHHHHHHHHHHHhhCCC
Q 019054          291 MRDGDDN------VKALFRQGQAYMA-LNDVDAAVESFEKALKLEPN  330 (347)
Q Consensus       291 l~~~p~~------~~a~~~~g~~~~~-~~~~~~A~~~~~~al~l~P~  330 (347)
                      +++.+..      ..++.++|.+|.. ++++++|+..|++++++.+.
T Consensus       104 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~  150 (290)
T d1qqea_         104 IQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQ  150 (290)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             hHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHh
Confidence            8876544      5678888888855 68999999999999887553

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.84  E-value=1.5e-09  Score=84.81  Aligned_cols=95  Identities=17%  Similarity=0.039  Sum_probs=78.9

Q ss_pred             hHHHHhhHHHHHHcCccccc----------hhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHH
Q 019054          205 LSWWMNAVDSIKVFGNEHYK----------KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACK  274 (347)
Q Consensus       205 ~~~~~~~a~~~~~~g~~~~~----------~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~  274 (347)
                      +...++.+..+..+|.+++.          .+++++|+..|++|++                  ++|....+|+++|.+|
T Consensus        24 l~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~------------------l~P~~~~a~~~lG~~y   85 (145)
T d1zu2a1          24 YKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL------------------IDPKKDEAVWCIGNAY   85 (145)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHH
T ss_pred             HhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH------------------hcchhhHHHhhHHHHH
Confidence            44455667888899988875          4566899999999999                  9999999999999999


Q ss_pred             HHcCC-----------hHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHH
Q 019054          275 LKLGD-----------LKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAA  317 (347)
Q Consensus       275 ~~l~~-----------~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A  317 (347)
                      ..+|+           |++|+.++++|++++|++..++..++.+....+.+.++
T Consensus        86 ~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~  139 (145)
T d1zu2a1          86 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEA  139 (145)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHH
T ss_pred             HHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            88764           79999999999999999999998888886555444443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.80  E-value=8.6e-09  Score=89.76  Aligned_cols=111  Identities=11%  Similarity=-0.056  Sum_probs=92.6

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHH-cCChHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK-LGDLKGALLDTEF  289 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-l~~~~~A~~~~~~  289 (347)
                      .+..+.+.|+.+.+.|++++|+..|.+++++....            ........++.++|.+|.. ++++++|+..+++
T Consensus        76 ~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~------------~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~  143 (290)
T d1qqea_          76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR------------GQFRRGANFKFELGEILENDLHDYAKAIDCYEL  143 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhc------------ccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHH
Confidence            46788999999999999999999999999965322            1223446778999988855 7999999999999


Q ss_pred             HhhcCCC------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 019054          290 AMRDGDD------NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG  333 (347)
Q Consensus       290 al~~~p~------~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~  333 (347)
                      |+.+.+.      ...++.++|.++..+|+|++|+..|+++++..|.+..
T Consensus       144 A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~  193 (290)
T d1qqea_         144 AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL  193 (290)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred             HHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchh
Confidence            9977432      2567999999999999999999999999999987653

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.75  E-value=3.8e-08  Score=73.22  Aligned_cols=83  Identities=12%  Similarity=0.063  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHHHcC---ChHHHHHHHHHHhhcCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 019054          264 SQIFTNSSACKLKLG---DLKGALLDTEFAMRDGDDN-VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELA  339 (347)
Q Consensus       264 ~~~~~nla~~~~~l~---~~~~A~~~~~~al~~~p~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~  339 (347)
                      ....++.|.|..+-.   +.++|+..++.+++.+|.+ ..++|.+|.+|..+|+|++|.+.++++++++|.+..+.....
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence            457788888888654   4679999999999999876 589999999999999999999999999999999999999999


Q ss_pred             HHHHHhc
Q 019054          340 VAKKKVS  346 (347)
Q Consensus       340 ~~~~~~~  346 (347)
                      .+++++.
T Consensus       115 ~Ie~~~~  121 (124)
T d2pqrb1         115 MVEDKIQ  121 (124)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9988765

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.65  E-value=3.2e-08  Score=84.89  Aligned_cols=96  Identities=11%  Similarity=0.016  Sum_probs=78.4

Q ss_pred             CccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCh
Q 019054          219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNV  298 (347)
Q Consensus       219 g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~  298 (347)
                      +..+++.|++++|+..|+++++                  .+|.+..++.+++.++...|++++|+..++++++++|++.
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~------------------~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~   64 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIK------------------ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL   64 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHH------------------TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcH
Confidence            3456789999999999999999                  9999999999999999999999999999999999988876


Q ss_pred             hHHHHH-----------------------------------HHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 019054          299 KALFRQ-----------------------------------GQAYMALNDVDAAVESFEKALKLEPNDG  332 (347)
Q Consensus       299 ~a~~~~-----------------------------------g~~~~~~~~~~~A~~~~~~al~l~P~~~  332 (347)
                      .++..+                                   +.++...|++++|.+.++++.++.|..+
T Consensus        65 ~~~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~  133 (264)
T d1zbpa1          65 PGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG  133 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred             HHHHHHHHHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence            555444                                   4445556666677777777776666544

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.54  E-value=5e-07  Score=79.59  Aligned_cols=98  Identities=12%  Similarity=-0.006  Sum_probs=84.6

Q ss_pred             hHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCC----------hHHHHHHHHHHhhcCCC
Q 019054          227 DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD----------LKGALLDTEFAMRDGDD  296 (347)
Q Consensus       227 ~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~----------~~~A~~~~~~al~~~p~  296 (347)
                      .+++|++.|+++|+                  .+|....+|+.++.++..++.          +.+|+..++++++.+|+
T Consensus        44 ~~~~al~~~~~~l~------------------~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk  105 (334)
T d1dcea1          44 LDESVLELTSQILG------------------ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK  105 (334)
T ss_dssp             CSHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             ccHHHHHHHHHHHH------------------HCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC
Confidence            34899999999999                  889999998888877766544          78999999999999999


Q ss_pred             ChhHHHHHHHHHHhcCC--HHHHHHHHHHHHhhCCCCHHHHHH-HHHHH
Q 019054          297 NVKALFRQGQAYMALND--VDAAVESFEKALKLEPNDGGIKKE-LAVAK  342 (347)
Q Consensus       297 ~~~a~~~~g~~~~~~~~--~~~A~~~~~~al~l~P~~~~~~~~-l~~~~  342 (347)
                      +..+|+.+|.++..+++  +++|+..++++++++|.+..+... +..+.
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~  154 (334)
T d1dcea1         106 SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAA  154 (334)
T ss_dssp             CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHH
Confidence            99999999999988875  899999999999999998887643 33443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.53  E-value=8.5e-08  Score=75.31  Aligned_cols=83  Identities=18%  Similarity=0.091  Sum_probs=65.2

Q ss_pred             HHHHHHH--HHHHHHcCChHHHHHHHHHHhhcCCCC------------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 019054          264 SQIFTNS--SACKLKLGDLKGALLDTEFAMRDGDDN------------VKALFRQGQAYMALNDVDAAVESFEKALKLEP  329 (347)
Q Consensus       264 ~~~~~nl--a~~~~~l~~~~~A~~~~~~al~~~p~~------------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P  329 (347)
                      ..++.++  |..++..|+|++|+..|++||++.|..            +.+|.++|.+|..+|+|++|+.++++++++.|
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~   86 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   86 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence            3445544  888889999999999999999988764            36899999999999999999999999999865


Q ss_pred             CC-----------HHHHHHHHHHHHHhc
Q 019054          330 ND-----------GGIKKELAVAKKKVS  346 (347)
Q Consensus       330 ~~-----------~~~~~~l~~~~~~~~  346 (347)
                      ..           ..+...++.+...++
T Consensus        87 ~~~~~~~~~~~~~~~a~~~~g~~~~~lg  114 (156)
T d2hr2a1          87 RRGELNQDEGKLWISAVYSRALALDGLG  114 (156)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccccccccccchhHHHHhhhHHHHHHHH
Confidence            31           124455666655544

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.52  E-value=1.7e-07  Score=81.77  Aligned_cols=106  Identities=16%  Similarity=0.038  Sum_probs=88.0

Q ss_pred             hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      .+....-.|..++..|++++|+..|+++++..+..             ..+....++.++|.+|..+|++++|+..++++
T Consensus        11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~-------------~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   77 (366)
T d1hz4a_          11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPG-------------WFYSRIVATSVLGEVLHCKGELTRSLALMQQT   77 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT-------------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCC-------------CcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            45555667889999999999999999999843211             23345678999999999999999999999999


Q ss_pred             hhcCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 019054          291 MRDGDDN------VKALFRQGQAYMALNDVDAAVESFEKALKLEP  329 (347)
Q Consensus       291 l~~~p~~------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P  329 (347)
                      +++.+..      ..+++.++.++...+++..|...+.+++.+.+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~  122 (366)
T d1hz4a_          78 EQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLIN  122 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            9875432      56889999999999999999999999998753

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=3.6e-08  Score=92.53  Aligned_cols=86  Identities=13%  Similarity=0.033  Sum_probs=52.9

Q ss_pred             HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 019054          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (347)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l  338 (347)
                      +++....++.++|.++.+.+++++|+..+.+++.++|  ..+++++|.++..+++|++|+.+|++|++++|++..+...|
T Consensus       115 l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~L  192 (497)
T d1ya0a1         115 VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQL  192 (497)
T ss_dssp             ----------------------------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHH
T ss_pred             CChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHH
Confidence            6778888999999999999999999999999998775  57899999999999999999999999999999999999999


Q ss_pred             HHHHHHhc
Q 019054          339 AVAKKKVS  346 (347)
Q Consensus       339 ~~~~~~~~  346 (347)
                      +.+....+
T Consensus       193 g~~~~~~~  200 (497)
T d1ya0a1         193 AILASSKG  200 (497)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHcC
Confidence            99876543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.39  E-value=2.1e-06  Score=68.87  Aligned_cols=89  Identities=16%  Similarity=0.058  Sum_probs=79.0

Q ss_pred             HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC----------------------hhHHHHHHHHHHhcCCHHH
Q 019054          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN----------------------VKALFRQGQAYMALNDVDA  316 (347)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~----------------------~~a~~~~g~~~~~~~~~~~  316 (347)
                      .+-.....+.+.|......|++++|+..|.+||.+.+..                      ..++..++.++..+|++++
T Consensus         6 ~D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~   85 (179)
T d2ff4a2           6 CDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASA   85 (179)
T ss_dssp             BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchH
Confidence            556677889999999999999999999999999987644                      2588999999999999999


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHhcC
Q 019054          317 AVESFEKALKLEPNDGGIKKELAVAKKKVSR  347 (347)
Q Consensus       317 A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  347 (347)
                      |+.+++++++++|.+..++..+..+...+++
T Consensus        86 Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr  116 (179)
T d2ff4a2          86 VIAELEALTFEHPYREPLWTQLITAYYLSDR  116 (179)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHhCCccHHHHHHHHHHHHHhcC
Confidence            9999999999999999999998888766543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.36  E-value=6.5e-07  Score=76.54  Aligned_cols=72  Identities=19%  Similarity=0.054  Sum_probs=66.2

Q ss_pred             HHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 019054          272 ACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK  343 (347)
Q Consensus       272 ~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  343 (347)
                      .-.++.|++++|+..++++++.+|+++.++..+|.+|...|++++|++.|+++++++|++..+...+..+..
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~   75 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK   75 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            345678999999999999999999999999999999999999999999999999999999998887776643

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.32  E-value=3.7e-07  Score=79.52  Aligned_cols=104  Identities=18%  Similarity=0.041  Sum_probs=85.9

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  291 (347)
                      +..+...|..+...+++++|...|.++++...              ...+.....+.++|.++..+|++++|+..+++++
T Consensus       213 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  278 (366)
T d1hz4a_         213 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEF--------------ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELN  278 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCC--------------TTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc--------------ccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            44566678888889999999999998876211              1233445678899999999999999999999998


Q ss_pred             h------cCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 019054          292 R------DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP  329 (347)
Q Consensus       292 ~------~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P  329 (347)
                      .      ..|....++..+|.+|..+|++++|++.|++|+++.+
T Consensus       279 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         279 ENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN  322 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence            4      3466688999999999999999999999999999865

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.32  E-value=1.3e-06  Score=64.65  Aligned_cols=79  Identities=9%  Similarity=0.037  Sum_probs=64.5

Q ss_pred             HHHHHHcCcccc---chhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhh-HHHHHHHHHHHHHHcCChHHHHHHH
Q 019054          212 VDSIKVFGNEHY---KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKT-KSQIFTNSSACKLKLGDLKGALLDT  287 (347)
Q Consensus       212 a~~~~~~g~~~~---~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~nla~~~~~l~~~~~A~~~~  287 (347)
                      ++..++.|..+.   ...+..+|+..++.+++                  .+|. ...+++++|.+|.++|+|++|+.++
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~------------------~~p~~~rd~lY~Lav~yyklgdy~~A~~~~   96 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYK------------------EAESRRRECLYYLTIGCYKLGEYSMAKRYV   96 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH------------------HCGGGHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHh------------------cCchhHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            445666776665   35677889999999887                  5554 4589999999999999999999999


Q ss_pred             HHHhhcCCCChhHHHHHHHHH
Q 019054          288 EFAMRDGDDNVKALFRQGQAY  308 (347)
Q Consensus       288 ~~al~~~p~~~~a~~~~g~~~  308 (347)
                      +++|+++|++..|...+-.+.
T Consensus        97 ~~~L~ieP~n~qA~~L~~~Ie  117 (124)
T d2pqrb1          97 DTLFEHERNNKQVGALKSMVE  117 (124)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHccCCCcHHHHHHHHHHH
Confidence            999999999999877665544

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.11  E-value=9.2e-06  Score=70.52  Aligned_cols=111  Identities=13%  Similarity=0.068  Sum_probs=82.8

Q ss_pred             HHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHH-cCChHHHHHHHHHHhhc
Q 019054          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK-LGDLKGALLDTEFAMRD  293 (347)
Q Consensus       215 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-l~~~~~A~~~~~~al~~  293 (347)
                      +...++...+.++++.|...|.++++                  ..|.....+...|..... .++.+.|...+++++..
T Consensus       137 w~~~~~~~~~~~~~~~ar~i~~~al~------------------~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~  198 (308)
T d2onda1         137 YIQYMKFARRAEGIKSGRMIFKKARE------------------DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK  198 (308)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHT------------------STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHH------------------hCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            34555666667778888888888877                  556666677777766544 57888888888888888


Q ss_pred             CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHH
Q 019054          294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG----IKKELAVAKK  343 (347)
Q Consensus       294 ~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~----~~~~l~~~~~  343 (347)
                      .|+++..+...+..+...|++++|...|++|++..|.++.    ++......+.
T Consensus       199 ~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~  252 (308)
T d2onda1         199 YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFES  252 (308)
T ss_dssp             HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence            8888888888888888888998888889998888775443    5554444433

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.09  E-value=2.8e-05  Score=67.28  Aligned_cols=105  Identities=11%  Similarity=-0.027  Sum_probs=55.2

Q ss_pred             cCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC
Q 019054          218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN  297 (347)
Q Consensus       218 ~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~  297 (347)
                      .|......+.+++|...|++|+..                 ..|....++...+..+..+|++++|...+++++...|.+
T Consensus        70 ~~~~~~~~~~~~~a~~i~~ral~~-----------------~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~  132 (308)
T d2onda1          70 KGDMNNAKLFSDEAANIYERAIST-----------------LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID  132 (308)
T ss_dssp             TSCCHHHHHHHHHHHHHHHHHHTT-----------------TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSC
T ss_pred             HHHHhhcccchHHHHHHHHHHHHH-----------------cCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCC
Confidence            344444555666677777777652                 123333445555555555555555555555555555543


Q ss_pred             h-hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 019054          298 V-KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELA  339 (347)
Q Consensus       298 ~-~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~  339 (347)
                      . .+|...+......++++.|.+.|+++++..|.+..+....+
T Consensus       133 ~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a  175 (308)
T d2onda1         133 PTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAA  175 (308)
T ss_dssp             THHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            2 34455555555555555555555555555555554444433

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.90  E-value=5e-05  Score=63.84  Aligned_cols=96  Identities=20%  Similarity=0.197  Sum_probs=82.6

Q ss_pred             HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHH----cCChHHHHHHH
Q 019054          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK----LGDLKGALLDT  287 (347)
Q Consensus       212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----l~~~~~A~~~~  287 (347)
                      +.++..+|..++++++|.+|+.+|++|.+                  .  .+..++.++|.+|..    ..++..|..++
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~------------------~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~   61 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACD------------------L--KENSGCFNLGVLYYQGQGVEKNLKKAASFY   61 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------T--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------C--CCHHHHHHHHHHHHcCCCcchhHHHHHHhh
Confidence            56789999999999999999999999976                  2  456789999999998    77999999999


Q ss_pred             HHHhhcCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCC
Q 019054          288 EFAMRDGDDNVKALFRQGQAYMA----LNDVDAAVESFEKALKLEP  329 (347)
Q Consensus       288 ~~al~~~p~~~~a~~~~g~~~~~----~~~~~~A~~~~~~al~l~P  329 (347)
                      ..+....  ++.+.+.+|..+..    ..+.+.|...++++.+..+
T Consensus        62 ~~a~~~~--~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~  105 (265)
T d1ouva_          62 AKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKY  105 (265)
T ss_dssp             HHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             ccccccc--ccchhhccccccccccccchhhHHHHHHHhhhhhhhh
Confidence            9988764  78888888888775    5688999999999988754

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.78  E-value=0.00011  Score=55.08  Aligned_cols=82  Identities=18%  Similarity=0.090  Sum_probs=68.3

Q ss_pred             hhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHH----cCChHHHHHHHHHHhhcCCCChhH
Q 019054          225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK----LGDLKGALLDTEFAMRDGDDNVKA  300 (347)
Q Consensus       225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----l~~~~~A~~~~~~al~~~p~~~~a  300 (347)
                      ..++++|+.+|+++.+                    ...+.+++++|.+|..    ..++.+|+.+++++.+.  .++.+
T Consensus        36 ~~~~~~a~~~~~~aa~--------------------~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a   93 (133)
T d1klxa_          36 QINKQKLFQYLSKACE--------------------LNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDG   93 (133)
T ss_dssp             TSCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHH
T ss_pred             ccCHHHHHHHHhhhhc--------------------ccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchH
Confidence            4567788888887755                    3566788999999986    56799999999999886  47899


Q ss_pred             HHHHHHHHHh----cCCHHHHHHHHHHHHhhC
Q 019054          301 LFRQGQAYMA----LNDVDAAVESFEKALKLE  328 (347)
Q Consensus       301 ~~~~g~~~~~----~~~~~~A~~~~~~al~l~  328 (347)
                      .+++|.+|..    ..++++|+.+|++|.++.
T Consensus        94 ~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          94 CLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            9999999987    568999999999999875

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.71  E-value=4.1e-05  Score=64.39  Aligned_cols=80  Identities=24%  Similarity=0.142  Sum_probs=66.9

Q ss_pred             hhHHHHHHHHHHHHHH----cCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCH
Q 019054          261 KTKSQIFTNSSACKLK----LGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMA----LNDVDAAVESFEKALKLEPNDG  332 (347)
Q Consensus       261 ~~~~~~~~nla~~~~~----l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~----~~~~~~A~~~~~~al~l~P~~~  332 (347)
                      ..+..+++++|.+|..    .+++++|+.+++++.+..  ++.+++++|.+|..    .+++++|+.+|++|..+.  +.
T Consensus       175 ~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g--~~  250 (265)
T d1ouva_         175 LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG--AK  250 (265)
T ss_dssp             TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT--CH
T ss_pred             ccccccccchhhhcccCcccccchhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc--CH
Confidence            4467899999999998    779999999999999884  79999999999986    458999999999999885  56


Q ss_pred             HHHHHHHHHHHH
Q 019054          333 GIKKELAVAKKK  344 (347)
Q Consensus       333 ~~~~~l~~~~~~  344 (347)
                      .+...|..++.+
T Consensus       251 ~A~~~l~~l~~~  262 (265)
T d1ouva_         251 GACDILKQLKIK  262 (265)
T ss_dssp             HHHHHHHTCCCC
T ss_pred             HHHHHHHHHHHH
Confidence            666666655443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.56  E-value=0.00049  Score=51.43  Aligned_cols=92  Identities=21%  Similarity=0.085  Sum_probs=74.1

Q ss_pred             hhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHH
Q 019054          225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQ  304 (347)
Q Consensus       225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~  304 (347)
                      +.++++|+.+|+++.+                  .  ....++++++.  ....++++|+.+++++.+.  .++.+++.+
T Consensus         6 ~kd~~~A~~~~~kaa~------------------~--g~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~L   61 (133)
T d1klxa_           6 KKDLKKAIQYYVKACE------------------L--NEMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFL   61 (133)
T ss_dssp             HHHHHHHHHHHHHHHH------------------T--TCTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHH------------------C--CChhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhH
Confidence            5799999999999987                  2  23445666653  4567899999999999876  589999999


Q ss_pred             HHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054          305 GQAYMA----LNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (347)
Q Consensus       305 g~~~~~----~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  342 (347)
                      |..|..    ..++++|+++|+++.+.  .++.+...|+.+.
T Consensus        62 g~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y  101 (133)
T d1klxa_          62 GDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQ  101 (133)
T ss_dssp             HHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred             HHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHH
Confidence            999986    56899999999999986  4677777777654

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.01  E-value=0.32  Score=32.98  Aligned_cols=39  Identities=18%  Similarity=0.081  Sum_probs=33.0

Q ss_pred             HHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhcc
Q 019054          208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW  246 (347)
Q Consensus       208 ~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~  246 (347)
                      .+..|..+...|..+-+.|+|++|+.+|.+|++++..+.
T Consensus        11 ~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~   49 (93)
T d1wfda_          11 DSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVL   49 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence            344677888889999999999999999999999876653

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.48  E-value=0.13  Score=33.62  Aligned_cols=39  Identities=21%  Similarity=0.216  Sum_probs=33.5

Q ss_pred             HhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccc
Q 019054          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE  247 (347)
Q Consensus       209 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~  247 (347)
                      ++.|..+-..+..+.+.|+|++||+++++|..++.++..
T Consensus         5 LN~AH~~~RrAer~l~~~rydeAIech~kA~~yl~eA~k   43 (83)
T d2crba1           5 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAMK   43 (83)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence            456777888899999999999999999999998876644

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.59  E-value=1.1  Score=38.00  Aligned_cols=41  Identities=24%  Similarity=0.193  Sum_probs=27.4

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054          302 FRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (347)
Q Consensus       302 ~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  342 (347)
                      --.-..|...|.+++.+..++.++.+.+.+..+...+..+.
T Consensus       103 ~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~ly  143 (336)
T d1b89a_         103 EELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILY  143 (336)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHH
Confidence            34456666777777777777777777777776666665543

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.01  E-value=1.6  Score=28.22  Aligned_cols=27  Identities=15%  Similarity=0.063  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054          264 SQIFTNSSACKLKLGDLKGALLDTEFA  290 (347)
Q Consensus       264 ~~~~~nla~~~~~l~~~~~A~~~~~~a  290 (347)
                      +..+-.+|.-+++.|+|++||++.++|
T Consensus         8 AH~~~RrAer~l~~~rydeAIech~kA   34 (83)
T d2crba1           8 AHQQSRRADRLLAAGKYEEAISCHRKA   34 (83)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            344555555566666666666554443

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.28  E-value=0.5  Score=30.71  Aligned_cols=40  Identities=18%  Similarity=0.239  Sum_probs=32.9

Q ss_pred             HHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccc
Q 019054          208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE  247 (347)
Q Consensus       208 ~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~  247 (347)
                      .++.|..+...|..+-+.|+|.+|+.+|..|++++.....
T Consensus         7 ~l~~A~~l~~~Av~~D~~~~y~~A~~~Y~~a~~~l~~~l~   46 (77)
T d1wr0a1           7 NLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVK   46 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence            4456778888888888999999999999999998765533

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=80.23  E-value=2.8  Score=36.65  Aligned_cols=56  Identities=13%  Similarity=0.066  Sum_probs=45.0

Q ss_pred             HHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 019054          271 SACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALK  326 (347)
Q Consensus       271 a~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~  326 (347)
                      +...+..+++..+...+...-......++..|.+|.++..+|+.++|...|..+.+
T Consensus       292 ~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~  347 (450)
T d1qsaa1         292 VRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (450)
T ss_dssp             HHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence            33456678999998888765443334588999999999999999999999999875