Citrus Sinensis ID: 019059

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340------
Protein Sequence
MQGGSSGIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLEK
Secondary Structure (PSIPRED)
cccccccEEEEcccccEEEEEEEEcccccEEEEcccccccccEEEEEEcccccEEEEEEEEEcccccEEEEEEccccccEEEEEEccccEEEEEEccccccccccccccccEEEEEccccccEEEEEEEccccccEEEEEcccEEEEEEcccccccEEEEEcccccccccEEEEEEcccccEEEEEEcccEEEEEEccccccccEEEcccEEEEEEccccccEEEEEEccccEEEEEcccccccEEEcccccccEEEEEEccccccEEEEEEccccEEEEcccccccccccccccccccccccccccEEEccccccEEEEEEccccccEEEEEEccccEEEEEccc
Secondary Structure Prediction (SSPRO)
cccccccEEEcHHHHHHHHcccccccccEEEEEEEEEccccccEEEEEcccccccEEEEEEEcccccEEEEEEccccccEEEEEEccccccEEEEEEcccccccccccccccEEEEccccccEEEEEEccccccEEEEEccccEEEEEEcccccccccccccEEcccccEEEEEEEccccccEEEEccccEEEEEEccccccEEEccccEEEEEcccccccEEEEEEccccEEEEEEcccccccEEEEcccccHEEEEEEcccccEEEEEEccccEEEEEEccccccccccccccccccccccccHEEEEcccccEEEEEEEcccccEEEEEEccccEEEEEEccc
Coil and Loop (DISEMBL)
mqggssgigyglKYQARCISdvkadtdhtsfltgtlslkeenEVHLLRLssggteliceglfshpneiwdlsscpfdqrIFSTVFSTGESYGAAIWQipelygqlnspqLERIAALDAHVGKINCVLWWssgrhdklvsidEENIFLWSLDcsnknaqvqskqssgmlhylsggawdphdvnAVAATCESSVQFWDLrsmgktnsiehahvrnvdydtkkKHLLVTAADESGIHLWDLRmlkapiqelpghthwtwavccnpeydgfilsagtdstVNLWLVStsnhdelpseslvespnQRANSLLNsysdyedsvyglawssrepwiFASLSYdgrvrnhmlek
Flexible Loop (DISEMBL)
MQGGSSGIGYGLKYQARCISDVKADTDHTSFLtgtlslkeenEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELpseslvespNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLEK
Low Complexity Region (SEG)
MQGGSSGIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLEK
Disordered region (IsUnstruct)
*******IGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSN***********GMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVS*************************SYSDYEDSVYGLAWSSREPWIFASLSYDGR********
Disordered Region (DISOPRED)
*****SG**YGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELY********ERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNK*********SGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST*****************RANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLEK
Disordered Region (DISEMBL)
MQGGSSGIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKN*********GMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSN****************ANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLEK
Disordered Region (DISPRO)
****SSGIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTS****************RANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLEK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQGGSSGIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLEK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	346	2.2.26 [Sep-21-2011]
Q6NPN9	350	WD repeat-containing prot	no	no	0.976	0.965	0.784	1e-156
Q5XJP1	387	Protein TSSC1 OS=Danio re	yes	no	0.953	0.852	0.339	7e-50
Q5PPK9	386	Protein TSSC1 OS=Rattus n	yes	no	0.956	0.857	0.319	5e-48
Q3KPT3	387	Protein TSSC1 OS=Xenopus	N/A	no	0.950	0.850	0.314	7e-48
Q8K0G5	386	Protein TSSC1 OS=Mus musc	yes	no	0.956	0.857	0.314	1e-47
Q6DUZ9	387	Protein TSSC1 OS=Gecko ja	N/A	no	0.947	0.847	0.329	2e-47
Q53HC9	387	Protein TSSC1 OS=Homo sap	yes	no	0.947	0.847	0.332	9e-47
Q5M8I4	387	Protein TSSC1 OS=Xenopus	yes	no	0.947	0.847	0.318	1e-46
Q4R571	387	Protein TSSC1 OS=Macaca f	N/A	no	0.947	0.847	0.327	1e-45
Q86A97	400	Protein tssc1 homolog OS=	yes	no	0.924	0.8	0.303	1e-44

>sp|Q6NPN9|DWA2_ARATH WD repeat-containing protein DWA2 OS=Arabidopsis thaliana GN=DWA2 PE=1 SV=1

 Score =  550 bits (1418), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 266/339 (78%), Positives = 295/339 (87%), Gaps = 1/339 (0%)

Query: 1   MQGGSSGIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEG 60
           MQGGSSGIGYGLKYQARCISDVKAD DHTSFLTGTLSLKEENEVHLLRLSSGG+EL+CEG
Sbjct: 1   MQGGSSGIGYGLKYQARCISDVKADRDHTSFLTGTLSLKEENEVHLLRLSSGGSELLCEG 60

Query: 61  LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV 120
           LFSHPNEIWDL+S PFDQRIFSTVFSTG+SYGAAIWQIPE YGQ NS  LE +A+LDAHV
Sbjct: 61  LFSHPNEIWDLASSPFDQRIFSTVFSTGDSYGAAIWQIPEPYGQSNSSTLECVASLDAHV 120

Query: 121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD 180
           GKINCVLW  SG  DKL+S+DE+N+  WSLD S K+A+V SK+S+GM H LSGGAW+PHD
Sbjct: 121 GKINCVLWCPSGNSDKLISMDEQNLVFWSLDSSKKSAEVLSKESAGMRHSLSGGAWNPHD 180

Query: 181 VNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRM 240
           VN+VAAT ESS+QFWDLR+M K NSIE AHVRNVDY+ K++H+LV+A DESGIHLWDLR 
Sbjct: 181 VNSVAATSESSIQFWDLRTMKKNNSIERAHVRNVDYNLKREHILVSADDESGIHLWDLRK 240

Query: 241 LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPN 300
            K P+QELPGHTHWTWAV CNPEY+  ILS GTDS VNLW  S S+  +  SES VE+  
Sbjct: 241 TKFPVQELPGHTHWTWAVRCNPEYEELILSVGTDSAVNLWFASASSEHKT-SESPVEASR 299

Query: 301 QRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRV 339
           QR N LLNSY+DYEDSVYGLAWSSREPWIFASLSYDGRV
Sbjct: 300 QRVNPLLNSYTDYEDSVYGLAWSSREPWIFASLSYDGRV 338

Component of the CUL4-RBX1-DDB1-DWA1/DWA2 E3 ubiquitin-protein ligase complex that acts as negative regulator in abscisic acid (ABA) signaling. May function as the substrate recognition module within this complex leading to ABI5 degradation. Functionally redundant with DWA1.
Arabidopsis thaliana (taxid: 3702)

>sp|Q5XJP1|TSSC1_DANRE Protein TSSC1 OS=Danio rerio GN=tssc1 PE=2 SV=1

 Score =  197 bits (502), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 125/368 (33%), Positives = 206/368 (55%), Gaps = 38/368 (10%)

Query: 8   IGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNE 67
           + YGL++QAR ++   A+TD   FL GT SLK +N++H++        +    L     E
Sbjct: 7   VIYGLEFQARALTAQTAETDAIRFLVGTQSLKFDNQIHIIDFDDENNMINKSVLLHDAGE 66

Query: 68  IWDLSSCPFDQRIFSTVFS-TGESY---GAAIWQIPELY---------GQLNSPQ-LERI 113
           IW +S  P D+ + +T ++ T ES     AA+W++P  +            N+PQ LE +
Sbjct: 67  IWHISGSPADKAVLTTCYNKTSESRVLTCAAVWRMPPEWESGNHESPDDSSNNPQTLELL 126

Query: 114 AALD--AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK---QSSGML 168
             LD  AH G + CVLW   G   +++S+ E ++ LW L  S+  A + S    +  G L
Sbjct: 127 CHLDNSAH-GSMACVLWEPMGDGKRVISLAENHVLLWDLQESSAKATISSSATLEGKGQL 185

Query: 169 HYLSGGAWDPH-DVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLL 224
            + + G W PH +   +A   +++++ WDLRSM +   IE+AH   VR++D++  K++ L
Sbjct: 186 KF-TAGKWSPHHNCTQLATANDTAIRGWDLRSMSQIYCIENAHGQLVRDLDFNPNKQYYL 244

Query: 225 VTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLW-LVS 283
            +  D+  +  WD+R +  P++ L  H+HW W+V  N  +D  +L+A +DS V L  +VS
Sbjct: 245 ASCGDDCKVKFWDVRHISEPVKCLEEHSHWVWSVRYNHSHDQLLLTASSDSRVILSNMVS 304

Query: 284 TS--------NHDEL--PSESLVESPNQRA--NSLLNSYSDYEDSVYGLAWSSREPWIFA 331
            S        + D+L  P E+  E   +    +S++++Y ++EDSVY + WS+ +PW+FA
Sbjct: 305 ISSEPFGHLVDDDDLSDPEENQQEDKGKEPLQDSIISTYEEHEDSVYAVEWSAADPWLFA 364

Query: 332 SLSYDGRV 339
           SLSYDGR+
Sbjct: 365 SLSYDGRL 372

Danio rerio (taxid: 7955)

>sp|Q5PPK9|TSSC1_RAT Protein TSSC1 OS=Rattus norvegicus GN=Tssc1 PE=2 SV=1

 Score =  191 bits (486), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 117/366 (31%), Positives = 197/366 (53%), Gaps = 35/366 (9%)

Query: 8   IGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNE 67
           + YGL++QAR ++   A+TD   FL GT SLK +N++H++        +    L     E
Sbjct: 7   VIYGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQIHIIDFDDENNIINKNVLLHQAGE 66

Query: 68  IWDLSSCPFDQRIFSTVFS-TGESY---GAAIWQIPELY--GQLNSPQ--------LERI 113
           IW +S+ P D+ + +T ++ T +S     AA+W++P+    G   SP+        LE +
Sbjct: 67  IWHISASPADKGVLATCYNKTSDSRVQACAAVWRMPKELESGSHESPEDPASTAQTLELL 126

Query: 114 AALD-AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK---QSSGMLH 169
             LD    G + CV+W   G   K++S+ + +I LW L  S+  A + S    +  G L 
Sbjct: 127 CHLDNGAQGNVACVVWEPMGDGKKVISLADSHILLWDLQPSSSQAVLASSAALEGRGQLK 186

Query: 170 YLSGGAWDPH-DVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLV 225
           + SG  W PH +   VA   +++++ WD RSM +   IE+AH   VR++D++  K++ L 
Sbjct: 187 FTSG-RWSPHHNCTQVATASDTTLRGWDTRSMSQIYCIENAHGQLVRDLDFNPNKQYYLA 245

Query: 226 TAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTV---NLWLV 282
           +  D+  +  WD R +  P++ L  H+HW W+V  N  +D  +L+  +DS V   N+  +
Sbjct: 246 SCGDDCKVKFWDTRNVTEPVKTLEEHSHWVWSVRYNHSHDQLVLTGSSDSRVILSNMVSI 305

Query: 283 STSNHDELPSESLVESPNQR---------ANSLLNSYSDYEDSVYGLAWSSREPWIFASL 333
           S+     L  +  V  P +           ++++ +Y ++EDSVY + W+S +PW+FASL
Sbjct: 306 SSEPFGHLVDDDDVSDPEEHHTEKSKEPLQDNVIATYEEHEDSVYAVDWASADPWLFASL 365

Query: 334 SYDGRV 339
           SYDGR+
Sbjct: 366 SYDGRL 371

Rattus norvegicus (taxid: 10116)

>sp|Q3KPT3|TSSC1_XENLA Protein TSSC1 OS=Xenopus laevis GN=tssc1 PE=2 SV=1

 Score =  191 bits (485), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 116/369 (31%), Positives = 197/369 (53%), Gaps = 40/369 (10%)

Query: 8   IGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNE 67
           + YGL++QAR ++   A+TD   FL GT SL+ +N++H++        +    L  H  E
Sbjct: 7   VIYGLEFQARALTAQTAETDAIRFLVGTQSLRYDNQIHVIDFDDENNIINKNVLLHHAGE 66

Query: 68  IWDLSSCPFDQRIFSTVFS----TGESYGAAIWQIP-ELYG---------QLNSPQLERI 113
           IW + + P D+ + +T ++    +     AA+W+IP EL G           N+  LE +
Sbjct: 67  IWQIGASPADRNVLATCYNKISDSKVMTCAAVWRIPKELQGGNHESPDDTSSNAQSLELL 126

Query: 114 AALDAHV-GKINCVLWWSSGRHDKLVSIDEENIFLWSLD---CSNKNAQVQSKQSSGMLH 169
             LD+   G + CV W   G   KL+S+ +  + +W L      +  +   + +  G L 
Sbjct: 127 CHLDSTAHGNMACVTWEPLGDGKKLLSLADNYLLIWDLQESSTKSVLSSSATLEGKGQLR 186

Query: 170 YLSGGAWDPH-DVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLV 225
           + SG  W PH +   VA   +++++ WD+RSM +   IE+AH   VR++D++  K++ L 
Sbjct: 187 FTSG-KWSPHHNCTQVATANDTAIRGWDIRSMRQIYCIENAHGQLVRDLDFNPNKQYYLA 245

Query: 226 TAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTV---NLWLV 282
           +  D+  +  WD R +  P++ L  H+HW W+V  N  +D  +L+  +DS V   N+  +
Sbjct: 246 SCGDDCKVKFWDTRNIHEPVKTLEEHSHWVWSVRYNHSHDQLVLTGSSDSRVILSNMVSI 305

Query: 283 ST------------SNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIF 330
           S+            S+ ++ P E   + P Q  +S++ +Y ++EDSVY + WSS +PW+F
Sbjct: 306 SSEPFGHLVDDEDLSDQEDNPQEEKTKEPLQ--DSIIGTYEEHEDSVYAVEWSSADPWLF 363

Query: 331 ASLSYDGRV 339
           ASLSYDGR+
Sbjct: 364 ASLSYDGRL 372

Xenopus laevis (taxid: 8355)

>sp|Q8K0G5|TSSC1_MOUSE Protein TSSC1 OS=Mus musculus GN=Tssc1 PE=1 SV=2

 Score =  190 bits (482), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 115/366 (31%), Positives = 196/366 (53%), Gaps = 35/366 (9%)

Query: 8   IGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNE 67
           + YGL++QAR ++   A+TD   FL GT SLK +N++H++        +    L     E
Sbjct: 7   VIYGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQIHIIDFDDENNIINKNVLLHQAGE 66

Query: 68  IWDLSSCPFDQRIFSTVFS-TGESY---GAAIWQIPELY--GQLNSPQ--------LERI 113
           IW +S+ P D+ + +T ++ T +S     AA+W++P+    G   SP         LE +
Sbjct: 67  IWHISASPADKGVLATCYNKTTDSRVQACAAVWRMPKELESGSHESPDDPASTAQTLELL 126

Query: 114 AALDAHV-GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK---QSSGMLH 169
             LD    G + CV+W   G   K++S+ + +I LW L  S+  A + S    +  G L 
Sbjct: 127 CHLDNSAQGNVACVVWEPMGDGKKVISLADSHILLWDLQPSSSQAVLASSATLEGRGQLK 186

Query: 170 YLSGGAWDPH-DVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLV 225
           + + G W PH +   VA   +++++ WD RSM +   IE+AH   VR++D++  K++ L 
Sbjct: 187 F-TAGRWSPHHNCTQVATASDTTLRGWDTRSMSQIYCIENAHGQLVRDLDFNPNKQYYLA 245

Query: 226 TAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTV---NLWLV 282
           +  D+  +  WD R +  P++ L  H+HW W+V  N  +D  +L+  +DS V   N+  +
Sbjct: 246 SCGDDCKVKFWDTRNVTEPVKTLEEHSHWVWSVRYNHSHDQLVLTGSSDSRVILSNMVSI 305

Query: 283 STSNHDELPSESLVESPNQR---------ANSLLNSYSDYEDSVYGLAWSSREPWIFASL 333
           S+     L  +  +  P +           ++++ +Y ++EDSVY + W+S +PW+FASL
Sbjct: 306 SSEPFGHLVDDGDISDPEEHHAEKSKEPLQDNVIATYEEHEDSVYAVDWASADPWLFASL 365

Query: 334 SYDGRV 339
           SYDGR+
Sbjct: 366 SYDGRL 371

Mus musculus (taxid: 10090)

>sp|Q6DUZ9|TSSC1_GECJA Protein TSSC1 OS=Gecko japonicus GN=TSSC1 PE=2 SV=1

 Score =  190 bits (482), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 122/370 (32%), Positives = 201/370 (54%), Gaps = 42/370 (11%)

Query: 8   IGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNE 67
           + YGL++QAR ++   A+TD   FL GT SLK +N++H++        +    L     E
Sbjct: 7   VIYGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQIHIIDFDDENNIINKNVLLHQVGE 66

Query: 68  IWDLSSCPFDQRIFSTVFS-TGESY---GAAIWQIPELY--GQLNSPQ--------LERI 113
           IW +S+ P D+ + +T +S T +S     AA+W++P+    G   SP         LE +
Sbjct: 67  IWHISASPADKGVLATCYSKTSDSKVMTCAAVWRMPKELESGSHESPDDSSSNAQTLELL 126

Query: 114 AALD--AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK---QSSGML 168
             LD  AH G +  VLW   G   KL+S+ + ++ LW L  S+  A + +    +  G L
Sbjct: 127 CHLDNTAH-GNMAGVLWEPMGDGKKLISLADNHLLLWDLQESSSKAVLSNSAALEGKGQL 185

Query: 169 HYLSGGAWDPH-DVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLL 224
            + SG  W PH +   VA   +++++ WD+R+M +   IE AH   VR++D++  K++ L
Sbjct: 186 KFTSG-RWSPHHNCTQVATANDTAIRGWDIRTMSQIYCIESAHGQLVRDLDFNPNKQYYL 244

Query: 225 VTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTV---NLWL 281
            +  D+  +  WD R +  P++ L  H+HW W V  N  +D  +L+A +DS V   N+  
Sbjct: 245 ASCGDDCKVKFWDTRNVSDPVKTLEEHSHWVWNVRYNHSHDQLVLTASSDSRVILSNMVS 304

Query: 282 VST------------SNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWI 329
           +S+            S+ ++   E  ++ P Q  +S++ +Y ++EDSVY + WSS +PW+
Sbjct: 305 ISSEPFGHLVDDEELSDQEDQHQEDKIKEPLQ--DSIIATYEEHEDSVYAVEWSSADPWL 362

Query: 330 FASLSYDGRV 339
           FASLSYDGR+
Sbjct: 363 FASLSYDGRL 372

Gecko japonicus (taxid: 146911)

>sp|Q53HC9|TSSC1_HUMAN Protein TSSC1 OS=Homo sapiens GN=TSSC1 PE=1 SV=2

 Score =  187 bits (475), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 123/370 (33%), Positives = 198/370 (53%), Gaps = 42/370 (11%)

Query: 8   IGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNE 67
           + YGL++QAR ++   A+TD   FL GT SLK +N++H++        +    L     E
Sbjct: 7   VIYGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQIHIIDFDDENNIINKNVLLHQAGE 66

Query: 68  IWDLSSCPFDQRIFSTVFS-TGESY---GAAIWQIPELY--GQLNSPQ--------LERI 113
           IW +S+ P D+ + +T ++ T +S     AA+W++P+    G   SP         LE +
Sbjct: 67  IWHISASPADRGVLTTCYNRTSDSKVLTCAAVWRMPKELESGSHESPDDSSSTAQTLELL 126

Query: 114 AALD--AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQS---SGML 168
             LD  AH G + CV+W   G   K++S+ + +I LW L  S+  A + S  S    G L
Sbjct: 127 CHLDNTAH-GNMACVVWEPMGDGKKIISLADNHILLWDLQESSSQAVLASSASLEGKGQL 185

Query: 169 HYLSGGAWDP-HDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLL 224
            + S G W P H+   VA   +++++ WD RSM +   IE+AH   VR++D++  K++ L
Sbjct: 186 KFTS-GRWSPHHNCTQVATANDTTLRGWDTRSMSQIYCIENAHGQLVRDLDFNPNKQYYL 244

Query: 225 VTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTV---NLWL 281
            +  D+  +  WD R +  P++ L  H+HW W V  N  +D  +L+  +DS V   N+  
Sbjct: 245 ASCGDDCKVKFWDTRNVTEPVKTLEEHSHWVWNVRYNHSHDQLVLTGSSDSRVILSNMVS 304

Query: 282 VSTSNHDEL------------PSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWI 329
           +S+     L             SE   + P Q  ++++ +Y ++EDSVY + WSS +PW+
Sbjct: 305 ISSEPFGHLVDDDDISDQEDHRSEEKSKEPLQ--DNVIATYEEHEDSVYAVDWSSADPWL 362

Query: 330 FASLSYDGRV 339
           FASLSYDGR+
Sbjct: 363 FASLSYDGRL 372

Homo sapiens (taxid: 9606)

>sp|Q5M8I4|TSSC1_XENTR Protein TSSC1 OS=Xenopus tropicalis GN=tssc1 PE=2 SV=1

 Score =  187 bits (475), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 118/370 (31%), Positives = 197/370 (53%), Gaps = 42/370 (11%)

Query: 8   IGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNE 67
           + YGL++QAR ++   A+TD   FL GT SL+ +N++H++        +    L  H  E
Sbjct: 7   VIYGLEFQARALAAQTAETDAIRFLVGTQSLRYDNQIHVIDFDDENNIINKNILLHHAGE 66

Query: 68  IWDLSSCPFDQRIFSTVFSTGESYG----AAIWQIP-ELYG---------QLNSPQLERI 113
           IW +S+ P D+ + +T ++          AA+W+IP EL G           N+  LE +
Sbjct: 67  IWQISASPADRNVLATCYNKISDSKVLTCAAVWRIPKELQGGNHESPDDTSSNAQALELL 126

Query: 114 AALD--AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLD---CSNKNAQVQSKQSSGML 168
             LD  AH G + CV W   G   KL+S+ +  + +W L      +  +   + +  G L
Sbjct: 127 CHLDNTAH-GNMACVTWEPLGDGKKLLSLADNYLMIWDLQESSTKSVLSSSVTLEGKGQL 185

Query: 169 HYLSGGAWDP-HDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLL 224
            + S G W P H+   VA   +++++ WD+RSM +   IE+AH   VR++D++  K++ L
Sbjct: 186 RFTS-GKWSPHHNCTQVATANDTAIRGWDIRSMRQIYCIENAHGQLVRDLDFNPNKQYYL 244

Query: 225 VTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTV---NLWL 281
            +  D+  +  WD R +  P++ L  H+HW W+V  N  +D  +L+  +DS V   N+  
Sbjct: 245 ASCGDDCKVKFWDTRNIHEPVKTLEEHSHWVWSVRYNHSHDQLVLTGSSDSRVILSNMVS 304

Query: 282 VST------------SNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWI 329
           +S+            S+ ++   E   + P Q  +S++ +Y ++EDSVY + WSS +PW+
Sbjct: 305 ISSEPFGHLVDDEDLSDQEDNLQEEKTKEPLQ--DSVIATYEEHEDSVYAVEWSSADPWL 362

Query: 330 FASLSYDGRV 339
           FASLSYDGR+
Sbjct: 363 FASLSYDGRL 372

Xenopus tropicalis (taxid: 8364)

>sp|Q4R571|TSSC1_MACFA Protein TSSC1 OS=Macaca fascicularis GN=TSSC1 PE=2 SV=1

 Score =  184 bits (466), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 121/370 (32%), Positives = 197/370 (53%), Gaps = 42/370 (11%)

Query: 8   IGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNE 67
           + YGL++QAR ++   A+TD   FL GT SLK +N++H++        +    L     E
Sbjct: 7   VIYGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQIHIIDFDDENNIINKNVLLHQAGE 66

Query: 68  IWDLSSCPFDQRIFSTVFS-TGESY---GAAIWQIPELY--GQLNSPQ--------LERI 113
           IW +S+ P D+ + +T ++ T +S     AA+W++P+    G   SP         LE +
Sbjct: 67  IWHISASPADRGVLATCYNRTSDSKVLTCAAVWRMPKELESGSHESPDDSSSTAQTLELL 126

Query: 114 AALD--AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQS---SGML 168
             LD  AH   + CV+W   G   K++S+ + +I LW L  S+  A + S  S    G L
Sbjct: 127 CHLDNTAH-SNMACVVWEPMGDGKKIISLADNHILLWDLQESSSQAVLASSASLGGKGQL 185

Query: 169 HYLSGGAWDP-HDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLL 224
            + S G W P H+   VA   +++++ WD R+M +   IE+AH   VR++D++  K++ L
Sbjct: 186 KFTS-GRWSPHHNCTQVATANDTTLRGWDTRTMSQIYCIENAHGQLVRDLDFNPNKQYYL 244

Query: 225 VTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTV---NLWL 281
            +  D+  +  WD R +  P++ L  H+HW W V  N  +D  +L+  +DS V   N+  
Sbjct: 245 ASCGDDCKVKFWDTRNVTEPVKTLEEHSHWVWNVRYNHSHDQLVLTGSSDSRVILSNMVS 304

Query: 282 VSTSNHDEL------------PSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWI 329
           +S+     L             SE   + P Q  ++++ +Y ++EDSVY + WSS +PW+
Sbjct: 305 ISSEPFGHLVDDDDISDQEDHRSEEKSKEPLQ--DNVIATYEEHEDSVYAVDWSSADPWL 362

Query: 330 FASLSYDGRV 339
           FASLSYDGR+
Sbjct: 363 FASLSYDGRL 372

Macaca fascicularis (taxid: 9541)

>sp|Q86A97|TSSC1_DICDI Protein tssc1 homolog OS=Dictyostelium discoideum GN=tssc1 PE=1 SV=1

 Score =  180 bits (457), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 115/379 (30%), Positives = 194/379 (51%), Gaps = 59/379 (15%)

Query: 10  YGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIW 69
           YGL  + R +S + A+ D   FL GT +L+EENE+ LL  +  G  + C  +F HP EI 
Sbjct: 14  YGLSQKTRALSHITAEADVNRFLVGTTALREENEIALLE-AKEGEGVRCLSIFPHPKEIH 72

Query: 70  DLSSCPFDQRIFSTVFSTGES----------------------YGAAIWQIPELYGQLNS 107
            ++SCPFD  +F +V++T                         + +++W+I E     + 
Sbjct: 73  SITSCPFDSSLFFSVYNTSGGGNNNSNNTNNNDNTNNNTNNNDFKSSLWRINE-----SM 127

Query: 108 PQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGM 167
             +E +  L  H G I  +L   SG ++ ++S+D+ NI LWS    ++N     KQ  G 
Sbjct: 128 DSIEELFELKGHTGIIKPILCDPSGSNNFIISLDDSNIRLWS-KIDDQNEPTVIKQF-GN 185

Query: 168 LHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLL 224
           L  LS G+ +P+  N +A   + +++ WD R+  +T S++ AH   +R++D++  K + L
Sbjct: 186 LSKLSVGSINPNISNQLATANDVNIKGWDFRNAKETFSMDKAHSEQIRDIDFNPNKPYYL 245

Query: 225 VTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLW-LVS 283
           ++A D+  + +WD R  + P++   GH HW W+   N  +D  I+++ +D+TV LW L S
Sbjct: 246 LSAGDDCKLKIWDTRQTRDPVKIFSGHNHWIWSAKFNRYHDQLIITSSSDNTVKLWNLYS 305

Query: 284 TSNHDELPSESLVESPNQRA------------------------NSLLNSYSDYEDSVYG 319
            S+     +     +  Q +                        + L+ +Y ++EDSVY 
Sbjct: 306 LSSAFNSENNISNSNEQQHSQQPNEQQPQQPPQPVKQKKNKRNEDQLIKTYEEHEDSVYN 365

Query: 320 LAWSSREPWIFASLSYDGR 338
           ++WSS   ++FASLSYDGR
Sbjct: 366 ISWSSSN-FLFASLSYDGR 383

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	346
224086020	351	predicted protein [Populus trichocarpa]	0.979	0.965	0.849	1e-172
224061895	352	predicted protein [Populus trichocarpa]	0.979	0.963	0.829	1e-170
22329691	351	transducin/WD-40 repeat-containing prote	0.979	0.965	0.843	1e-169
297845020	351	transducin family protein [Arabidopsis l	0.979	0.965	0.843	1e-169
8778614	388	F5M15.14 [Arabidopsis thaliana]	0.979	0.873	0.826	1e-168
302141668	350	unnamed protein product [Vitis vinifera]	0.976	0.965	0.837	1e-168
359492258	351	PREDICTED: WD repeat-containing protein	0.976	0.962	0.835	1e-167
449452963	357	PREDICTED: WD repeat-containing protein	0.976	0.946	0.8	1e-159
255539184	340	nucleotide binding protein, putative [Ri	0.919	0.935	0.833	1e-159
356508796	350	PREDICTED: WD repeat-containing protein	0.976	0.965	0.781	1e-156

>gi|224086020|ref|XP_002307781.1| predicted protein [Populus trichocarpa] gi|222857230|gb|EEE94777.1| predicted protein [Populus trichocarpa]

 Score =  611 bits (1575), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 288/339 (84%), Positives = 312/339 (92%)

Query: 1   MQGGSSGIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEG 60
           MQGGSSGIGYGLKYQARCISDVKADTDHTSF+TGTLSL+EENEVHLLRLSSGGTELICEG
Sbjct: 1   MQGGSSGIGYGLKYQARCISDVKADTDHTSFITGTLSLREENEVHLLRLSSGGTELICEG 60

Query: 61  LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV 120
           LFSHPNEIWDLSSCPFDQRIFSTVFSTGES+GAA+WQIPELYGQLNSPQLERIA+LD HV
Sbjct: 61  LFSHPNEIWDLSSCPFDQRIFSTVFSTGESFGAAVWQIPELYGQLNSPQLERIASLDGHV 120

Query: 121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD 180
           GK+NC+LWW SGR+DKL+SIDEEN+FLWSLDCS K AQVQSK+S+GMLHYLSGGAWDPHD
Sbjct: 121 GKVNCILWWPSGRNDKLISIDEENLFLWSLDCSRKAAQVQSKESAGMLHYLSGGAWDPHD 180

Query: 181 VNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRM 240
           VNAVAATCESSVQFWDLR+M KT+SIE  HVRNVDYDT+K H+LVTA DESGIH+WDLRM
Sbjct: 181 VNAVAATCESSVQFWDLRTMKKTSSIECGHVRNVDYDTRKMHILVTAEDESGIHIWDLRM 240

Query: 241 LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPN 300
            K PI EL GH+HWTWAV CNPEYDG ILS GTDSTVNLW  ST+  DEL S S+V SP 
Sbjct: 241 PKVPINELRGHSHWTWAVTCNPEYDGLILSGGTDSTVNLWFASTTTSDELTSGSVVASPT 300

Query: 301 QRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRV 339
           Q+ + LL S++DYEDSVYGLAWSSREPWIFASLSYDGRV
Sbjct: 301 QKLDPLLYSFNDYEDSVYGLAWSSREPWIFASLSYDGRV 339

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224061895|ref|XP_002300652.1| predicted protein [Populus trichocarpa] gi|222842378|gb|EEE79925.1| predicted protein [Populus trichocarpa]

 Score =  602 bits (1552), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 282/340 (82%), Positives = 315/340 (92%), Gaps = 1/340 (0%)

Query: 1   MQGGSSGIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEG 60
           MQGGS+GIGYGLKYQARCISDVKADTDHTSF+TGTLSL+EENEVHLLRLS+GGTELICEG
Sbjct: 1   MQGGSTGIGYGLKYQARCISDVKADTDHTSFITGTLSLREENEVHLLRLSAGGTELICEG 60

Query: 61  LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV 120
           LFSHP EIW+LSSCPFDQR+FSTVFS+GES+GAA+WQIPELYGQLNSPQLERIA+LD HV
Sbjct: 61  LFSHPEEIWNLSSCPFDQRVFSTVFSSGESFGAAVWQIPELYGQLNSPQLERIASLDGHV 120

Query: 121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD 180
           GK+NCVLWW SGR+DKL+SID+ENIFLWSLDCS + AQVQSK+S+GMLHYLSGGAWDPHD
Sbjct: 121 GKLNCVLWWPSGRNDKLISIDQENIFLWSLDCSRQAAQVQSKESAGMLHYLSGGAWDPHD 180

Query: 181 VNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRM 240
           VNAVAATCESSVQFWDLR+M KTNSIE  HVRNVDYDT+KKH+LVTA DESGIH+WDLRM
Sbjct: 181 VNAVAATCESSVQFWDLRAMKKTNSIECGHVRNVDYDTRKKHILVTAEDESGIHIWDLRM 240

Query: 241 LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPN 300
            K P++EL GH+HWTWAV CNPEYDG ILS G+DSTVNLW  ST+  DEL SES+ +SP 
Sbjct: 241 PKVPVKELRGHSHWTWAVACNPEYDGLILSGGSDSTVNLWFASTTTSDELTSESVFKSPT 300

Query: 301 QRANS-LLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRV 339
           +  +S LLNS+SDY+DSVYGLAWSS+EPWIFASLSYDGRV
Sbjct: 301 RELDSMLLNSFSDYDDSVYGLAWSSQEPWIFASLSYDGRV 340

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22329691|ref|NP_173478.2| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gi|20260516|gb|AAM13156.1| unknown protein [Arabidopsis thaliana] gi|23198164|gb|AAN15609.1| unknown protein [Arabidopsis thaliana] gi|332191863|gb|AEE29984.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana]

 Score =  601 bits (1549), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 286/339 (84%), Positives = 310/339 (91%)

Query: 1   MQGGSSGIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEG 60
           MQGGSSGIGYGLKYQ+RCISDVKADTD+TSFLTGTLSLKEENEVHLLRLSSGG+ELICEG
Sbjct: 1   MQGGSSGIGYGLKYQSRCISDVKADTDYTSFLTGTLSLKEENEVHLLRLSSGGSELICEG 60

Query: 61  LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV 120
           LFSHPNEIWDL+SCPFDQRIFSTVFSTGES+GAAIWQIPELYGQLNSPQLER+A+LDAHV
Sbjct: 61  LFSHPNEIWDLASCPFDQRIFSTVFSTGESFGAAIWQIPELYGQLNSPQLERVASLDAHV 120

Query: 121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD 180
           GKINCVLWW SGR DKL+SIDE+NIFLWSLDCS K+A+V SK S+GMLH LSGGAWDPHD
Sbjct: 121 GKINCVLWWPSGRCDKLISIDEQNIFLWSLDCSKKSAEVLSKDSAGMLHSLSGGAWDPHD 180

Query: 181 VNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRM 240
           VNAVAAT ESSVQFWDLR+M K NSIEHAHVR VDY+ K++H+LVTA DESGIH+WDLR 
Sbjct: 181 VNAVAATGESSVQFWDLRTMKKVNSIEHAHVRGVDYNPKREHILVTAEDESGIHVWDLRK 240

Query: 241 LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPN 300
            K P+QELPGHTHWTWAV CNPEYDG ILSAGTDS VNLW  S ++ D+  SES VES  
Sbjct: 241 AKVPVQELPGHTHWTWAVRCNPEYDGLILSAGTDSVVNLWYASATSSDDKTSESPVESTR 300

Query: 301 QRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRV 339
           QR N LLNSY+DYEDSVYGLAWSSREPW+FASLSYDGRV
Sbjct: 301 QRVNPLLNSYTDYEDSVYGLAWSSREPWVFASLSYDGRV 339

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845020|ref|XP_002890391.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297336233|gb|EFH66650.1| transducin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  601 bits (1549), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 286/339 (84%), Positives = 309/339 (91%)

Query: 1   MQGGSSGIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEG 60
           MQGGSSGIGYGLKYQARCISDVKADTD+TSFLTGTLSLKEENEVHLLRLSSGG+ELICEG
Sbjct: 1   MQGGSSGIGYGLKYQARCISDVKADTDYTSFLTGTLSLKEENEVHLLRLSSGGSELICEG 60

Query: 61  LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV 120
           LFSHPNEIWDL+SCPFDQRIFSTVFSTGES+GAAIWQIPELYGQLNSPQLER+A+LDAHV
Sbjct: 61  LFSHPNEIWDLASCPFDQRIFSTVFSTGESFGAAIWQIPELYGQLNSPQLERVASLDAHV 120

Query: 121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD 180
           GKINCVLWW SGR DKL+SIDE+N+FLWSLDCS K+A+V SK S+GMLH LSGGAWDPHD
Sbjct: 121 GKINCVLWWPSGRCDKLISIDEQNLFLWSLDCSKKSAEVLSKDSAGMLHSLSGGAWDPHD 180

Query: 181 VNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRM 240
           VNAVAAT ESSVQFWDLR+M K  SIEHAHVR VDY+ K++H+LVTA DESGIH+WDLR 
Sbjct: 181 VNAVAATGESSVQFWDLRTMKKVKSIEHAHVRGVDYNPKREHILVTAEDESGIHVWDLRK 240

Query: 241 LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPN 300
            K P+QELPGHTHWTWAV CNPEYDG ILSAGTDS VNLW  S S+ D+  SES VES  
Sbjct: 241 AKVPVQELPGHTHWTWAVKCNPEYDGLILSAGTDSAVNLWFASASSSDDKTSESPVESTR 300

Query: 301 QRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRV 339
           QR N LLNSY+DYEDSVYGLAWSSREPW+FASLSYDGRV
Sbjct: 301 QRVNPLLNSYTDYEDSVYGLAWSSREPWVFASLSYDGRV 339

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8778614|gb|AAF79622.1|AC027665_23 F5M15.14 [Arabidopsis thaliana]

 Score =  597 bits (1539), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 286/346 (82%), Positives = 310/346 (89%), Gaps = 7/346 (2%)

Query: 1   MQGGSSGIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEV-------HLLRLSSGG 53
           MQGGSSGIGYGLKYQ+RCISDVKADTD+TSFLTGTLSLKEENEV       HLLRLSSGG
Sbjct: 29  MQGGSSGIGYGLKYQSRCISDVKADTDYTSFLTGTLSLKEENEVNPYAFKVHLLRLSSGG 88

Query: 54  TELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERI 113
           +ELICEGLFSHPNEIWDL+SCPFDQRIFSTVFSTGES+GAAIWQIPELYGQLNSPQLER+
Sbjct: 89  SELICEGLFSHPNEIWDLASCPFDQRIFSTVFSTGESFGAAIWQIPELYGQLNSPQLERV 148

Query: 114 AALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSG 173
           A+LDAHVGKINCVLWW SGR DKL+SIDE+NIFLWSLDCS K+A+V SK S+GMLH LSG
Sbjct: 149 ASLDAHVGKINCVLWWPSGRCDKLISIDEQNIFLWSLDCSKKSAEVLSKDSAGMLHSLSG 208

Query: 174 GAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGI 233
           GAWDPHDVNAVAAT ESSVQFWDLR+M K NSIEHAHVR VDY+ K++H+LVTA DESGI
Sbjct: 209 GAWDPHDVNAVAATGESSVQFWDLRTMKKVNSIEHAHVRGVDYNPKREHILVTAEDESGI 268

Query: 234 HLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSE 293
           H+WDLR  K P+QELPGHTHWTWAV CNPEYDG ILSAGTDS VNLW  S ++ D+  SE
Sbjct: 269 HVWDLRKAKVPVQELPGHTHWTWAVRCNPEYDGLILSAGTDSVVNLWYASATSSDDKTSE 328

Query: 294 SLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRV 339
           S VES  QR N LLNSY+DYEDSVYGLAWSSREPW+FASLSYDGRV
Sbjct: 329 SPVESTRQRVNPLLNSYTDYEDSVYGLAWSSREPWVFASLSYDGRV 374

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302141668|emb|CBI18871.3| unnamed protein product [Vitis vinifera]

 Score =  596 bits (1537), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 284/339 (83%), Positives = 312/339 (92%), Gaps = 1/339 (0%)

Query: 1   MQGGSSGIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEG 60
           MQGGSSGIGYGLKYQARCI+DVKADTDHTSF+TGTLSLKEENEVHL+RLSSGGTELICEG
Sbjct: 1   MQGGSSGIGYGLKYQARCIADVKADTDHTSFITGTLSLKEENEVHLIRLSSGGTELICEG 60

Query: 61  LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV 120
           LFSHPNEIWDL+SCP+DQR+FSTVFS+GESYGAA+WQIPELYGQLNSPQLERIA LDAH 
Sbjct: 61  LFSHPNEIWDLASCPYDQRVFSTVFSSGESYGAAVWQIPELYGQLNSPQLERIAVLDAHA 120

Query: 121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD 180
            KI C+LWW SGRHDKLVSID+EN+FLWSLD S K AQV SK+S+GMLHYLSGGAWDPHD
Sbjct: 121 CKIKCILWWPSGRHDKLVSIDDENLFLWSLDSSRKAAQVISKESAGMLHYLSGGAWDPHD 180

Query: 181 VNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRM 240
           VN+VA+TCE S+QFWDLR+M KTNSIEHAHVRNVDYDTKKKH+LVTA DESGI +WDLRM
Sbjct: 181 VNSVASTCEWSIQFWDLRTMKKTNSIEHAHVRNVDYDTKKKHILVTAEDESGICIWDLRM 240

Query: 241 LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPN 300
            K PI+ELPGHTHWTW V CNPEY G ILSAGTDS+VNLWL S S++D+L SES +ESP 
Sbjct: 241 PKVPIKELPGHTHWTWTVKCNPEY-GLILSAGTDSSVNLWLASMSSNDDLTSESPIESPT 299

Query: 301 QRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRV 339
           ++ + LLNSYSDYEDSVYGLAWSSREP IFASLSYDGRV
Sbjct: 300 RQVDPLLNSYSDYEDSVYGLAWSSREPSIFASLSYDGRV 338

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492258|ref|XP_002285928.2| PREDICTED: WD repeat-containing protein DWA2 [Vitis vinifera]

 Score =  592 bits (1526), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 284/340 (83%), Positives = 312/340 (91%), Gaps = 2/340 (0%)

Query: 1   MQGGSSGIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEG 60
           MQGGSSGIGYGLKYQARCI+DVKADTDHTSF+TGTLSLKEENEVHL+RLSSGGTELICEG
Sbjct: 1   MQGGSSGIGYGLKYQARCIADVKADTDHTSFITGTLSLKEENEVHLIRLSSGGTELICEG 60

Query: 61  LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV 120
           LFSHPNEIWDL+SCP+DQR+FSTVFS+GESYGAA+WQIPELYGQLNSPQLERIA LDAH 
Sbjct: 61  LFSHPNEIWDLASCPYDQRVFSTVFSSGESYGAAVWQIPELYGQLNSPQLERIAVLDAHA 120

Query: 121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD 180
            KI C+LWW SGRHDKLVSID+EN+FLWSLD S K AQV SK+S+GMLHYLSGGAWDPHD
Sbjct: 121 CKIKCILWWPSGRHDKLVSIDDENLFLWSLDSSRKAAQVISKESAGMLHYLSGGAWDPHD 180

Query: 181 VNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRM 240
           VN+VA+TCE S+QFWDLR+M KTNSIEHAHVRNVDYDTKKKH+LVTA DESGI +WDLRM
Sbjct: 181 VNSVASTCEWSIQFWDLRTMKKTNSIEHAHVRNVDYDTKKKHILVTAEDESGICIWDLRM 240

Query: 241 LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSE-SLVESP 299
            K PI+ELPGHTHWTW V CNPEY G ILSAGTDS+VNLWL S S++D+L SE S +ESP
Sbjct: 241 PKVPIKELPGHTHWTWTVKCNPEY-GLILSAGTDSSVNLWLASMSSNDDLTSESSPIESP 299

Query: 300 NQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRV 339
            ++ + LLNSYSDYEDSVYGLAWSSREP IFASLSYDGRV
Sbjct: 300 TRQVDPLLNSYSDYEDSVYGLAWSSREPSIFASLSYDGRV 339

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452963|ref|XP_004144228.1| PREDICTED: WD repeat-containing protein DWA2-like [Cucumis sativus] gi|449489307|ref|XP_004158274.1| PREDICTED: WD repeat-containing protein DWA2-like [Cucumis sativus]

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 272/340 (80%), Positives = 302/340 (88%), Gaps = 2/340 (0%)

Query: 1   MQGGSSGIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEG 60
           MQGGSSGIGYGLKYQARCI+DVKADTDHTSF+TGTLSLK+ENEVHL+RLSS G+ELICEG
Sbjct: 8   MQGGSSGIGYGLKYQARCIADVKADTDHTSFITGTLSLKDENEVHLIRLSSSGSELICEG 67

Query: 61  LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV 120
           LFSHPNEIWDL+SCPF+QRIFSTVFSTGE++GAAIWQIPELYG+LNSPQLER+ +LD H 
Sbjct: 68  LFSHPNEIWDLASCPFEQRIFSTVFSTGENFGAAIWQIPELYGELNSPQLERVTSLDEHA 127

Query: 121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD 180
            KINCV+WW SGRHDKL+SIDEENIFLWSLDCS K AQVQSK+S+GMLHY SGG WDPHD
Sbjct: 128 SKINCVIWWPSGRHDKLISIDEENIFLWSLDCSRKTAQVQSKESAGMLHYFSGGTWDPHD 187

Query: 181 VNAVAATCESSVQFWDLRSMGKTNSIE-HAHVRNVDYDTKKKHLLVTAADESGIHLWDLR 239
            NA+AAT ESSVQFWDLR+M KT+SI   A+VRNVDY+ KKKHLLVTA DE+GI +WDLR
Sbjct: 188 SNAIAATSESSVQFWDLRTMKKTDSIACSAYVRNVDYNPKKKHLLVTAEDETGISIWDLR 247

Query: 240 MLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESP 299
             K PIQ+LPGHTHWT AV CNPEYDG ILSAGTDS VNLWL S S+ DE  SE  V+S 
Sbjct: 248 RPKVPIQQLPGHTHWTSAVRCNPEYDGLILSAGTDSAVNLWLASMSD-DEPKSERKVDSS 306

Query: 300 NQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRV 339
            ++ + LL+SYSDYEDSVYGLAWS REPWIFASLSYDGRV
Sbjct: 307 PRQCDPLLHSYSDYEDSVYGLAWSFREPWIFASLSYDGRV 346

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539184|ref|XP_002510657.1| nucleotide binding protein, putative [Ricinus communis] gi|223551358|gb|EEF52844.1| nucleotide binding protein, putative [Ricinus communis]

 Score =  567 bits (1460), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 266/319 (83%), Positives = 294/319 (92%), Gaps = 1/319 (0%)

Query: 1   MQGGSSGIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEG 60
           MQGGSSGIGYG+KYQARCISDVKADTDHTSFLTGTLSL+EENEVHL+RLSSGG+ELICEG
Sbjct: 1   MQGGSSGIGYGVKYQARCISDVKADTDHTSFLTGTLSLREENEVHLIRLSSGGSELICEG 60

Query: 61  LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV 120
           LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAA+WQIPELYGQLNSPQLE+IA+LDAH 
Sbjct: 61  LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAVWQIPELYGQLNSPQLEKIASLDAHS 120

Query: 121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD 180
           G INCVLWW SGR+DKLVSIDEE++FLW+LDC+ K AQVQSK+S+GMLHYLSGGAWDPHD
Sbjct: 121 GNINCVLWWPSGRNDKLVSIDEESLFLWNLDCARKVAQVQSKESAGMLHYLSGGAWDPHD 180

Query: 181 VNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRM 240
           VN VAATCESS+QFWDLR+M KTNSI+ AHVRN+DYDTKKKH+LVTA DESGIH+WDLRM
Sbjct: 181 VNVVAATCESSIQFWDLRTMKKTNSIDCAHVRNIDYDTKKKHILVTAEDESGIHIWDLRM 240

Query: 241 LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSE-SLVESP 299
            K P++ELPGH HWTWA+ CNPEYDG ILS GTDSTVNLW  STS  D + SE SLVESP
Sbjct: 241 PKVPVKELPGHAHWTWAIACNPEYDGLILSGGTDSTVNLWFASTSTGDVMSSERSLVESP 300

Query: 300 NQRANSLLNSYSDYEDSVY 318
            Q+ + LLN++SDYEDSVY
Sbjct: 301 TQQVDPLLNTFSDYEDSVY 319

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508796|ref|XP_003523140.1| PREDICTED: WD repeat-containing protein DWA2-like [Glycine max]

 Score =  556 bits (1434), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 265/339 (78%), Positives = 295/339 (87%), Gaps = 1/339 (0%)

Query: 1   MQGGSSGIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEG 60
           MQ  SSGIGYGLKYQARCISDVKADTDHTSFL GTLSLKEENEVHL+RLSS GTEL CEG
Sbjct: 1   MQAASSGIGYGLKYQARCISDVKADTDHTSFLAGTLSLKEENEVHLIRLSSSGTELFCEG 60

Query: 61  LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV 120
           LFSHPNEIWDL SCPFDQRIFSTV+S GE+YGAAIWQIPELYG+LNSPQLERI +LD   
Sbjct: 61  LFSHPNEIWDLVSCPFDQRIFSTVYSNGETYGAAIWQIPELYGELNSPQLERITSLDTDS 120

Query: 121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD 180
           GKI C+LWW SGRHDKL+SI+EEN++LW+LD S K AQVQS+ S+GMLH LSGGAWDPHD
Sbjct: 121 GKIKCILWWPSGRHDKLISINEENLYLWNLDVSKKTAQVQSQDSAGMLHKLSGGAWDPHD 180

Query: 181 VNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRM 240
           V++VAATCES +QFWD+R+M KT SIE +HV +VDY  +K+H+LVTA  ESGIH+WDLR 
Sbjct: 181 VSSVAATCESYLQFWDVRTMKKTMSIECSHVCSVDYHPQKQHILVTAEHESGIHIWDLRK 240

Query: 241 LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPN 300
            K PIQELPGHTHWTW V CNPEYDG ILSAGTDSTVNLWL ST NHDEL +E  V+S  
Sbjct: 241 PKVPIQELPGHTHWTWTVKCNPEYDGMILSAGTDSTVNLWLAST-NHDELTTERQVDSSA 299

Query: 301 QRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRV 339
           +  + LLN+YSDYEDS+YGL WSSREPWIFASLSYDGRV
Sbjct: 300 RWVDPLLNTYSDYEDSIYGLTWSSREPWIFASLSYDGRV 338

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	346
TAIR|locus:2030387	351	AT1G20540 "AT1G20540" [Arabido	0.979	0.965	0.843	2.2e-160
TAIR|locus:2014629	350	DWA2 "AT1G76260" [Arabidopsis	0.976	0.965	0.784	1.3e-146
DICTYBASE|DDB_G0274279	400	tssc1 "WD40 repeat-containing	0.609	0.527	0.299	6.7e-43
ZFIN|ZDB-GENE-041010-167	387	tssc1 "tumor suppressing subtr	0.670	0.599	0.361	4.8e-39
MGI|MGI:1289332	386	Tssc1 "tumor suppressing subtr	0.661	0.593	0.32	2.4e-35
UNIPROTKB|E9PC52	416	RBBP7 "Histone-binding protein	0.794	0.661	0.233	7.8e-13
UNIPROTKB|K7GRD3	416	LOC100519001 "Uncharacterized	0.794	0.661	0.233	7.8e-13
DICTYBASE|DDB_G0278285	1005	copB2 "coatomer protein comple	0.497	0.171	0.316	8.6e-13
UNIPROTKB|Q3SWX8	425	RBBP7 "Histone-binding protein	0.592	0.482	0.237	2.4e-12
UNIPROTKB|E2RM49	425	RBBP7 "Uncharacterized protein	0.592	0.482	0.237	2.4e-12

TAIR|locus:2030387 AT1G20540 "AT1G20540" [Arabidopsis thaliana (taxid:3702)]

 Score = 1562 (554.9 bits), Expect = 2.2e-160, P = 2.2e-160
 Identities = 286/339 (84%), Positives = 310/339 (91%)

Query:     1 MQGGSSGIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEG 60
             MQGGSSGIGYGLKYQ+RCISDVKADTD+TSFLTGTLSLKEENEVHLLRLSSGG+ELICEG
Sbjct:     1 MQGGSSGIGYGLKYQSRCISDVKADTDYTSFLTGTLSLKEENEVHLLRLSSGGSELICEG 60

Query:    61 LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV 120
             LFSHPNEIWDL+SCPFDQRIFSTVFSTGES+GAAIWQIPELYGQLNSPQLER+A+LDAHV
Sbjct:    61 LFSHPNEIWDLASCPFDQRIFSTVFSTGESFGAAIWQIPELYGQLNSPQLERVASLDAHV 120

Query:   121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD 180
             GKINCVLWW SGR DKL+SIDE+NIFLWSLDCS K+A+V SK S+GMLH LSGGAWDPHD
Sbjct:   121 GKINCVLWWPSGRCDKLISIDEQNIFLWSLDCSKKSAEVLSKDSAGMLHSLSGGAWDPHD 180

Query:   181 VNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRM 240
             VNAVAAT ESSVQFWDLR+M K NSIEHAHVR VDY+ K++H+LVTA DESGIH+WDLR 
Sbjct:   181 VNAVAATGESSVQFWDLRTMKKVNSIEHAHVRGVDYNPKREHILVTAEDESGIHVWDLRK 240

Query:   241 LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPN 300
              K P+QELPGHTHWTWAV CNPEYDG ILSAGTDS VNLW  S ++ D+  SES VES  
Sbjct:   241 AKVPVQELPGHTHWTWAVRCNPEYDGLILSAGTDSVVNLWYASATSSDDKTSESPVESTR 300

Query:   301 QRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRV 339
             QR N LLNSY+DYEDSVYGLAWSSREPW+FASLSYDGRV
Sbjct:   301 QRVNPLLNSYTDYEDSVYGLAWSSREPWVFASLSYDGRV 339

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

TAIR|locus:2014629 DWA2 "AT1G76260" [Arabidopsis thaliana (taxid:3702)]

 Score = 1432 (509.1 bits), Expect = 1.3e-146, P = 1.3e-146
 Identities = 266/339 (78%), Positives = 295/339 (87%)

Query:     1 MQGGSSGIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEG 60
             MQGGSSGIGYGLKYQARCISDVKAD DHTSFLTGTLSLKEENEVHLLRLSSGG+EL+CEG
Sbjct:     1 MQGGSSGIGYGLKYQARCISDVKADRDHTSFLTGTLSLKEENEVHLLRLSSGGSELLCEG 60

Query:    61 LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV 120
             LFSHPNEIWDL+S PFDQRIFSTVFSTG+SYGAAIWQIPE YGQ NS  LE +A+LDAHV
Sbjct:    61 LFSHPNEIWDLASSPFDQRIFSTVFSTGDSYGAAIWQIPEPYGQSNSSTLECVASLDAHV 120

Query:   121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD 180
             GKINCVLW  SG  DKL+S+DE+N+  WSLD S K+A+V SK+S+GM H LSGGAW+PHD
Sbjct:   121 GKINCVLWCPSGNSDKLISMDEQNLVFWSLDSSKKSAEVLSKESAGMRHSLSGGAWNPHD 180

Query:   181 VNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRM 240
             VN+VAAT ESS+QFWDLR+M K NSIE AHVRNVDY+ K++H+LV+A DESGIHLWDLR 
Sbjct:   181 VNSVAATSESSIQFWDLRTMKKNNSIERAHVRNVDYNLKREHILVSADDESGIHLWDLRK 240

Query:   241 LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPN 300
              K P+QELPGHTHWTWAV CNPEY+  ILS GTDS VNLW  S S+  +  SES VE+  
Sbjct:   241 TKFPVQELPGHTHWTWAVRCNPEYEELILSVGTDSAVNLWFASASSEHKT-SESPVEASR 299

Query:   301 QRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRV 339
             QR N LLNSY+DYEDSVYGLAWSSREPWIFASLSYDGRV
Sbjct:   300 QRVNPLLNSYTDYEDSVYGLAWSSREPWIFASLSYDGRV 338

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0009788 "negative regulation of abscisic acid mediated signaling pathway" evidence=IMP

GO:0016567 "protein ubiquitination" evidence=IMP

GO:0006281 "DNA repair" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009749 "response to glucose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0010100 "negative regulation of photomorphogenesis" evidence=RCA

GO:0042732 "D-xylose metabolic process" evidence=RCA

GO:0048608 "reproductive structure development" evidence=RCA

DICTYBASE|DDB_G0274279 tssc1 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 296 (109.3 bits), Expect = 6.7e-43, Sum P(2) = 6.7e-43
 Identities = 67/224 (29%), Positives = 126/224 (56%)

Query:    86 STGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENI 145
             +    + +++W+I E    ++S  +E +  L  H G I  +L   SG ++ ++S+D+ NI
Sbjct:   111 TNNNDFKSSLWRINE---SMDS--IEELFELKGHTGIIKPILCDPSGSNNFIISLDDSNI 165

Query:   146 FLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNS 205
              LWS    ++N     KQ  G L  LS G+ +P+  N +A   + +++ WD R+  +T S
Sbjct:   166 RLWS-KIDDQNEPTVIKQF-GNLSKLSVGSINPNISNQLATANDVNIKGWDFRNAKETFS 223

Query:   206 IEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNP 262
             ++ AH   +R++D++  K + L++A D+  + +WD R  + P++   GH HW W+   N 
Sbjct:   224 MDKAHSEQIRDIDFNPNKPYYLLSAGDDCKLKIWDTRQTRDPVKIFSGHNHWIWSAKFNR 283

Query:   263 EYDGFILSAGTDSTVNLW-LVSTSNHDELPSESLVESPNQRANS 305
              +D  I+++ +D+TV LW L S S+     SE+ + + N++ +S
Sbjct:   284 YHDQLIITSSSDNTVKLWNLYSLSS--AFNSENNISNSNEQQHS 325

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

ZFIN|ZDB-GENE-041010-167 tssc1 "tumor suppressing subtransferable candidate 1" [Danio rerio (taxid:7955)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 93/257 (36%), Positives = 152/257 (59%)

Query:   106 NSPQ-LERIAALD--AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK 162
             N+PQ LE +  LD  AH G + CVLW   G   +++S+ E ++ LW L  S+  A + S 
Sbjct:   118 NNPQTLELLCHLDNSAH-GSMACVLWEPMGDGKRVISLAENHVLLWDLQESSAKATISSS 176

Query:   163 ---QSSGMLHYLSGGAWDPH-DVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVD 215
                +  G L + + G W PH +   +A   +++++ WDLRSM +   IE+AH   VR++D
Sbjct:   177 ATLEGKGQLKF-TAGKWSPHHNCTQLATANDTAIRGWDLRSMSQIYCIENAHGQLVRDLD 235

Query:   216 YDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDS 275
             ++  K++ L +  D+  +  WD+R +  P++ L  H+HW W+V  N  +D  +L+A +DS
Sbjct:   236 FNPNKQYYLASCGDDCKVKFWDVRHISEPVKCLEEHSHWVWSVRYNHSHDQLLLTASSDS 295

Query:   276 TVNLW-LVSTSN----H----DEL--PSESLVESPNQRA--NSLLNSYSDYEDSVYGLAW 322
              V L  +VS S+    H    D+L  P E+  E   +    +S++++Y ++EDSVY + W
Sbjct:   296 RVILSNMVSISSEPFGHLVDDDDLSDPEENQQEDKGKEPLQDSIISTYEEHEDSVYAVEW 355

Query:   323 SSREPWIFASLSYDGRV 339
             S+ +PW+FASLSYDGR+
Sbjct:   356 SAADPWLFASLSYDGRL 372

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

MGI|MGI:1289332 Tssc1 "tumor suppressing subtransferable candidate 1" [Mus musculus (taxid:10090)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 80/250 (32%), Positives = 137/250 (54%)

Query:   110 LERIAALDAHV-GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK---QSS 165
             LE +  LD    G + CV+W   G   K++S+ + +I LW L  S+  A + S    +  
Sbjct:   123 LELLCHLDNSAQGNVACVVWEPMGDGKKVISLADSHILLWDLQPSSSQAVLASSATLEGR 182

Query:   166 GMLHYLSGGAWDPH-DVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKK 221
             G L + + G W PH +   VA   +++++ WD RSM +   IE+AH   VR++D++  K+
Sbjct:   183 GQLKF-TAGRWSPHHNCTQVATASDTTLRGWDTRSMSQIYCIENAHGQLVRDLDFNPNKQ 241

Query:   222 HLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTV---N 278
             + L +  D+  +  WD R +  P++ L  H+HW W+V  N  +D  +L+  +DS V   N
Sbjct:   242 YYLASCGDDCKVKFWDTRNVTEPVKTLEEHSHWVWSVRYNHSHDQLVLTGSSDSRVILSN 301

Query:   279 LWLVSTSNHDELPSESLVESPNQR---------ANSLLNSYSDYEDSVYGLAWSSREPWI 329
             +  +S+     L  +  +  P +           ++++ +Y ++EDSVY + W+S +PW+
Sbjct:   302 MVSISSEPFGHLVDDGDISDPEEHHAEKSKEPLQDNVIATYEEHEDSVYAVDWASADPWL 361

Query:   330 FASLSYDGRV 339
             FASLSYDGR+
Sbjct:   362 FASLSYDGRL 371

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E9PC52 RBBP7 "Histone-binding protein RBBP7" [Homo sapiens (taxid:9606)]

 Score = 194 (73.4 bits), Expect = 7.8e-13, P = 7.8e-13
 Identities = 70/300 (23%), Positives = 127/300 (42%)

Query:    50 SSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGE----SYGAAIWQIPELYGQL 105
             S  G ++ CE   +H  E+      P +  I +T   + +     Y     + P+  G+ 
Sbjct:    99 SDKGGKIECEIKINHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAK-PDPSGEC 157

Query:   106 NSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI-DEENIFLWSLDCSNKNAQVQSKQS 164
             N P L     L  H  K    L W+S     L+S  D+  + LW ++   K  ++   ++
Sbjct:   158 N-PDLR----LRGHQ-KEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKA 211

Query:   165 --SGMLHYLSGGAWDP-HDVNAVAATCESSVQFWDLRS--MGKTNSIEHAHVRNVD---Y 216
               +G    +   AW   H+    +   +  +  WD RS    K + +  AH   V+   +
Sbjct:   212 IFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSF 271

Query:   217 DTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDST 276
             +   + +L T + +  + LWDLR LK  +     H    + V  +P  +  + S+GTD  
Sbjct:   272 NPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRR 331

Query:   277 VNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYD 336
             +N+W +S    +E  +E   + P +    LL  +  +   +   +W+  EPW+  S+S D
Sbjct:   332 LNVWDLSKIG-EEQSAEDAEDGPPE----LLFIHGGHTAKISDFSWNPNEPWVICSVSED 386

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|K7GRD3 LOC100519001 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 194 (73.4 bits), Expect = 7.8e-13, P = 7.8e-13
 Identities = 70/300 (23%), Positives = 127/300 (42%)

Query:    50 SSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGE----SYGAAIWQIPELYGQL 105
             S  G ++ CE   +H  E+      P +  I +T   + +     Y     + P+  G+ 
Sbjct:    99 SEKGGKIECEIKINHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAK-PDPSGEC 157

Query:   106 NSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI-DEENIFLWSLDCSNKNAQVQSKQS 164
             N P L     L  H  K    L W+S     L+S  D+  + LW ++   K  ++   ++
Sbjct:   158 N-PDLR----LRGHQ-KEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKA 211

Query:   165 --SGMLHYLSGGAWDP-HDVNAVAATCESSVQFWDLRS--MGKTNSIEHAHVRNVD---Y 216
               +G    +   AW   H+    +   +  +  WD RS    K + +  AH   V+   +
Sbjct:   212 IFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSF 271

Query:   217 DTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDST 276
             +   + +L T + +  + LWDLR LK  +     H    + V  +P  +  + S+GTD  
Sbjct:   272 NPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRR 331

Query:   277 VNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYD 336
             +N+W +S    +E  +E   + P +    LL  +  +   +   +W+  EPW+  S+S D
Sbjct:   332 LNVWDLSKIG-EEQSAEDAEDGPPE----LLFIHGGHTAKISDFSWNPNEPWVICSVSED 386

GO:0005634 "nucleus" evidence=IEA

DICTYBASE|DDB_G0278285 copB2 "coatomer protein complex beta 2 subunit (beta prime)" [Dictyostelium discoideum (taxid:44689)]

 Score = 204 (76.9 bits), Expect = 8.6e-13, Sum P(2) = 8.6e-13
 Identities = 58/183 (31%), Positives = 92/183 (50%)

Query:   106 NSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSS 165
             N   +E+I + +AH   I C++   +  +  L S D+  I LW  +    N QV      
Sbjct:    86 NYNTMEKIKSFEAHADYIRCIIVHPTLPYI-LSSSDDMFIKLWDYEKGWSNTQV----FE 140

Query:   166 GMLHYLSGGAWDPHDVNAVA-ATCESSVQFWDLRSMGKTNSIE-HAH-VRNVDYDTK-KK 221
             G  HY+   AW+P D N  A A+ + +V+ W + S     ++E H   + +V+Y +  +K
Sbjct:   141 GHSHYVMSIAWNPKDTNQFATASLDKTVKVWSINSPHPHFTLEGHEKGINSVEYFSGGEK 200

Query:   222 HLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWL 281
               L++ AD+  + +WD +  K  +Q L GH++    VC +PE    ILS   D TV LW 
Sbjct:   201 PYLISGADDKLVKIWDYQS-KTCVQTLEGHSNNVSVVCYHPELP-LILSGSEDGTVKLWH 258

Query:   282 VST 284
              ST
Sbjct:   259 SST 261

GO:0030117 "membrane coat" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=ISS

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0030663 "COPI-coated vesicle membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|Q3SWX8 RBBP7 "Histone-binding protein RBBP7" [Bos taurus (taxid:9913)]

 Score = 190 (71.9 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 52/219 (23%), Positives = 98/219 (44%)

Query:   127 LWWSSGRHDKLVSI-DEENIFLWSLDCSNKNAQVQSKQS--SGMLHYLSGGAWDP-HDVN 182
             L W+S     L+S  D+  + LW ++   K  ++   ++  +G    +   AW   H+  
Sbjct:   182 LSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESL 241

Query:   183 AVAATCESSVQFWDLRS--MGKTNSIEHAHVRNVD---YDTKKKHLLVTAADESGIHLWD 237
               +   +  +  WD RS    K + +  AH   V+   ++   + +L T + +  + LWD
Sbjct:   242 FGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 301

Query:   238 LRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVE 297
             LR LK  +     H    + V  +P  +  + S+GTD  +N+W +S    +E  +E   +
Sbjct:   302 LRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIG-EEQSAEDAED 360

Query:   298 SPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYD 336
              P +    LL  +  +   +   +W+  EPW+  S+S D
Sbjct:   361 GPPE----LLFIHGGHTAKISDFSWNPNEPWVICSVSED 395

GO:0016581 "NuRD complex" evidence=ISS

GO:0030308 "negative regulation of cell growth" evidence=ISS

GO:0070370 "cellular heat acclimation" evidence=ISS

GO:0035098 "ESC/E(Z) complex" evidence=ISS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

UNIPROTKB|E2RM49 RBBP7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 190 (71.9 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 52/219 (23%), Positives = 98/219 (44%)

Query:   127 LWWSSGRHDKLVSI-DEENIFLWSLDCSNKNAQVQSKQS--SGMLHYLSGGAWDP-HDVN 182
             L W+S     L+S  D+  + LW ++   K  ++   ++  +G    +   AW   H+  
Sbjct:   182 LSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESL 241

Query:   183 AVAATCESSVQFWDLRS--MGKTNSIEHAHVRNVD---YDTKKKHLLVTAADESGIHLWD 237
               +   +  +  WD RS    K + +  AH   V+   ++   + +L T + +  + LWD
Sbjct:   242 FGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 301

Query:   238 LRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVE 297
             LR LK  +     H    + V  +P  +  + S+GTD  +N+W +S    +E  +E   +
Sbjct:   302 LRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIG-EEQSAEDAED 360

Query:   298 SPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYD 336
              P +    LL  +  +   +   +W+  EPW+  S+S D
Sbjct:   361 GPPE----LLFIHGGHTAKISDFSWNPNEPWVICSVSED 395

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5M8I4	TSSC1_XENTR	No assigned EC number	0.3189	0.9479	0.8475	yes	no
Q6NPN9	DWA2_ARATH	No assigned EC number	0.7846	0.9768	0.9657	no	no
Q5PPK9	TSSC1_RAT	No assigned EC number	0.3196	0.9566	0.8575	yes	no
Q5XJP1	TSSC1_DANRE	No assigned EC number	0.3396	0.9537	0.8527	yes	no
Q8K0G5	TSSC1_MOUSE	No assigned EC number	0.3142	0.9566	0.8575	yes	no
Q53HC9	TSSC1_HUMAN	No assigned EC number	0.3324	0.9479	0.8475	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.V.2048.1 hypothetical protein (351 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	346
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-13
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-11
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-09
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-09
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	7e-06
smart00320	40	smart00320, WD40, WD40 repeats	0.003
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.003

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 69.7 bits (169), Expect = 4e-13
 Identities = 48/232 (20%), Positives = 89/232 (38%), Gaps = 25/232 (10%)

Query: 111 ERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHY 170
           + I  L+ H   +  + +   G+     S  +  I LW L  + K     +  +      
Sbjct: 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR-TGKPLSTLAGHTD----P 200

Query: 171 LSGGAWDPHDVNAVA-ATCESSVQFWDLRSMGKTNSIEHAHVRNVDYD-TKKKHLLVTAA 228
           +S  A+ P     +A  + + +++ WDL +     S    H  +V    +    LL + +
Sbjct: 201 VSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGS 260

Query: 229 DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHD 288
            +  I LWDLR   + ++ L GH+    +V  +P+    + S  +D TV LW + T    
Sbjct: 261 SDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGK-LLASGSSDGTVRLWDLETGKL- 318

Query: 289 ELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVR 340
                               +   +E  V  L++S     + +  S DG +R
Sbjct: 319 ----------------LSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIR 354

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 53/280 (18%), Positives = 103/280 (36%), Gaps = 46/280 (16%)

Query: 64  HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKI 123
           H   + D+++      +     S        +W         +    E +  L  H   +
Sbjct: 50  HTGPVRDVAASADGTYL----ASGSSDKTIRLW---------DLETGECVRTLTGHTSYV 96

Query: 124 NCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNA 183
           + V  +S        S  ++ I +W ++       ++              A+ P     
Sbjct: 97  SSVA-FSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVN-----SVAFSPDGTFV 150

Query: 184 VAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRM 240
            +++ + +++ WDLR+     ++   H   V +V +    + LL +++D   I LWDL  
Sbjct: 151 ASSSQDGTIKLWDLRTGKCVATLTG-HTGEVNSVAFSPDGEKLLSSSSD-GTIKLWDLST 208

Query: 241 LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPN 300
            K  +  L GH +   +V  +P+    + S   D T+ +W                   +
Sbjct: 209 GKC-LGTLRGHENGVNSVAFSPD-GYLLASGSEDGTIRVW-------------------D 247

Query: 301 QRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVR 340
            R    + + S + +SV  LAWS     + AS S DG +R
Sbjct: 248 LRTGECVQTLSGHTNSVTSLAWSPDGKRL-ASGSADGTIR 286

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 58.9 bits (141), Expect = 1e-09
 Identities = 47/255 (18%), Positives = 87/255 (34%), Gaps = 24/255 (9%)

Query: 42  NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPEL 101
             V L  LS+ G  +    L  H   +  L+  P  + + S     G      +W     
Sbjct: 134 GTVKLWDLSTPGKLIRT--LEGHSESVTSLAFSPDGKLLASGSSLDGTIK---LW----- 183

Query: 102 YGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQS 161
               +    + ++ L  H   ++ + +   G         +  I LW L          S
Sbjct: 184 ----DLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS 239

Query: 162 KQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDT 218
             S  ++      ++ P      + + + +++ WDLRS          H   V +V +  
Sbjct: 240 GHSDSVVS-----SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP 294

Query: 219 KKKHLLVTAADESGIHLWDLRMLKAPIQE-LPGHTHWTWAVCCNPEYDGFILSAGTDSTV 277
             K LL + + +  + LWDL   K      L GH     ++  +P+    +     D T+
Sbjct: 295 DGK-LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTI 353

Query: 278 NLWLVSTSNHDELPS 292
            LW + T    +   
Sbjct: 354 RLWDLRTGKPLKTLE 368

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 55/268 (20%), Positives = 105/268 (39%), Gaps = 37/268 (13%)

Query: 18  CISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFD 77
            + DV A  D T   +G+     +  + L  L +G  E +   L  H + +  ++  P D
Sbjct: 53  PVRDVAASADGTYLASGS----SDKTIRLWDLETG--ECVRT-LTGHTSYVSSVAFSP-D 104

Query: 78  QRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKL 137
            RI   + S+       +W +            + +  L  H   +N V +         
Sbjct: 105 GRI---LSSSSRDKTIKVWDVE---------TGKCLTTLRGHTDWVNSVAF---SPDGTF 149

Query: 138 VSI--DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFW 195
           V+    +  I LW L              +G    ++  A+ P     ++++ + +++ W
Sbjct: 150 VASSSQDGTIKLWDLRTGKCV-----ATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLW 204

Query: 196 DLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHT 252
           DL + GK       H   V +V +      LL + +++  I +WDLR     +Q L GHT
Sbjct: 205 DLST-GKCLGTLRGHENGVNSVAFSPDGY-LLASGSEDGTIRVWDLRT-GECVQTLSGHT 261

Query: 253 HWTWAVCCNPEYDGFILSAGTDSTVNLW 280
           +   ++  +P+    + S   D T+ +W
Sbjct: 262 NSVTSLAWSPDG-KRLASGSADGTIRIW 288

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 52.8 bits (125), Expect = 1e-07
 Identities = 37/172 (21%), Positives = 70/172 (40%), Gaps = 25/172 (14%)

Query: 175 AWDPHDVNAVAATCESSVQFWDLRSMGK-TNSIEHAH---VRNVDYDTKKKHLLVTAADE 230
           A+ P     ++ + + +++ WDL +  K   S+E  H   V  +   +   + ++ A+  
Sbjct: 72  AFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSS 131

Query: 231 SG--IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHD 288
               + LWDL      I+ L GH+    ++  +P+       +  D T+ LW + T    
Sbjct: 132 LDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG--- 188

Query: 289 ELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVR 340
                             L++ + + D V  LA+S     + AS S DG +R
Sbjct: 189 ----------------KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR 224

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 47.0 bits (110), Expect = 7e-06
 Identities = 31/177 (17%), Positives = 65/177 (36%), Gaps = 5/177 (2%)

Query: 111 ERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHY 170
             +  L  H   +  V +   G+        +  + LW L+     + +  K   G +  
Sbjct: 275 SLLRTLSGHSSSVLSVAFSPDGK-LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSS 333

Query: 171 LSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADE 230
           LS        +     + + +++ WDLR+     ++E          +    ++ + + +
Sbjct: 334 LSFSPD--GSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTD 391

Query: 231 SGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNH 287
             + LWDL      ++ L GHT    +          + S  +D+T+ LW + TS  
Sbjct: 392 GTVRLWDLSTGS-LLRNLDGHTSRVTS-LDFSPDGKSLASGSSDNTIRLWDLKTSLK 446

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 35.0 bits (81), Expect = 0.003
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 244 PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLW 280
            ++ L GHT    +V  +P+   ++ S   D T+ LW
Sbjct: 4   LLKTLKGHTGPVTSVAFSPD-GKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 34.6 bits (80), Expect = 0.003
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 244 PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLW 280
            ++ L GHT    +V  +P+    + S   D TV +W
Sbjct: 3   LLRTLKGHTGPVTSVAFSPD-GNLLASGSDDGTVRVW 38

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	346
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0772	641	consensus Uncharacterized conserved protein, conta	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0302	440	consensus Ribosome Assembly protein [General funct	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
PTZ00420	568	coronin; Provisional	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	100.0
KOG0973	942	consensus Histone transcription regulator HIRA, WD	100.0
PTZ00420	568	coronin; Provisional	99.98
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.98
KOG0641	350	consensus WD40 repeat protein [General function pr	99.98
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.97
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.97
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.97
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
KOG0296	399	consensus Angio-associated migratory cell protein	99.97
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.97
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.96
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.96
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.96
KOG0639	705	consensus Transducin-like enhancer of split protei	99.96
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.96
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.96
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.96
KOG0643	327	consensus Translation initiation factor 3, subunit	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.96
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.96
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.96
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.96
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.96
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.96
KOG2096	420	consensus WD40 repeat protein [General function pr	99.96
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.96
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.96
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.96
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.95
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG0646	476	consensus WD40 repeat protein [General function pr	99.95
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.95
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.95
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.95
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.95
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.95
KOG2055	514	consensus WD40 repeat protein [General function pr	99.95
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.94
KOG0267	825	consensus Microtubule severing protein katanin p80	99.94
KOG1539	910	consensus WD repeat protein [General function pred	99.94
KOG0267	825	consensus Microtubule severing protein katanin p80	99.94
KOG0639	705	consensus Transducin-like enhancer of split protei	99.94
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.94
KOG4328	498	consensus WD40 protein [Function unknown]	99.94
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.94
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.94
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.94
KOG1274	933	consensus WD40 repeat protein [General function pr	99.93
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.93
KOG0646	476	consensus WD40 repeat protein [General function pr	99.93
KOG2048	691	consensus WD40 repeat protein [General function pr	99.93
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.93
KOG1273	405	consensus WD40 repeat protein [General function pr	99.93
KOG2055	514	consensus WD40 repeat protein [General function pr	99.93
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.93
KOG2048	691	consensus WD40 repeat protein [General function pr	99.92
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.92
KOG1539	910	consensus WD repeat protein [General function pred	99.92
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.92
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.92
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.92
KOG1188	376	consensus WD40 repeat protein [General function pr	99.92
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.92
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.91
KOG4328	498	consensus WD40 protein [Function unknown]	99.91
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.91
KOG1274	933	consensus WD40 repeat protein [General function pr	99.91
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.91
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.9
KOG2096	420	consensus WD40 repeat protein [General function pr	99.9
KOG1273	405	consensus WD40 repeat protein [General function pr	99.9
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.9
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.9
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.9
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.9
PRK11028	330	6-phosphogluconolactonase; Provisional	99.89
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.89
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.89
KOG4227	609	consensus WD40 repeat protein [General function pr	99.89
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.89
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.89
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.89
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.89
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.88
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.88
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.87
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.86
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.86
KOG0649	325	consensus WD40 repeat protein [General function pr	99.85
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.84
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.84
COG2319	466	FOG: WD40 repeat [General function prediction only	99.84
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.82
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.82
COG2319	466	FOG: WD40 repeat [General function prediction only	99.82
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.82
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.81
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.81
PRK01742	429	tolB translocation protein TolB; Provisional	99.81
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.81
KOG1310	758	consensus WD40 repeat protein [General function pr	99.81
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.8
PRK11028	330	6-phosphogluconolactonase; Provisional	99.8
PRK01742	429	tolB translocation protein TolB; Provisional	99.8
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.8
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.8
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.8
KOG1334	559	consensus WD40 repeat protein [General function pr	99.8
KOG1188	376	consensus WD40 repeat protein [General function pr	99.8
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.8
KOG0649	325	consensus WD40 repeat protein [General function pr	99.8
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.8
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.79
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.79
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.79
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.78
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.78
PRK03629	429	tolB translocation protein TolB; Provisional	99.78
KOG1310	758	consensus WD40 repeat protein [General function pr	99.77
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.77
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.77
KOG2139	445	consensus WD40 repeat protein [General function pr	99.76
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.76
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.75
KOG1963	792	consensus WD40 repeat protein [General function pr	99.74
KOG2139	445	consensus WD40 repeat protein [General function pr	99.73
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.73
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.73
PRK05137	435	tolB translocation protein TolB; Provisional	99.72
PRK05137	435	tolB translocation protein TolB; Provisional	99.72
PRK03629	429	tolB translocation protein TolB; Provisional	99.72
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.72
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.72
PRK04922	433	tolB translocation protein TolB; Provisional	99.71
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.71
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.71
PRK04922	433	tolB translocation protein TolB; Provisional	99.7
PRK02889	427	tolB translocation protein TolB; Provisional	99.7
KOG2321	703	consensus WD40 repeat protein [General function pr	99.7
KOG1963	792	consensus WD40 repeat protein [General function pr	99.69
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.69
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.69
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.68
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.68
PRK02889	427	tolB translocation protein TolB; Provisional	99.68
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.68
KOG1334	559	consensus WD40 repeat protein [General function pr	99.67
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.67
KOG4227	609	consensus WD40 repeat protein [General function pr	99.66
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.66
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.65
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.65
PRK04792	448	tolB translocation protein TolB; Provisional	99.64
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.63
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.63
PRK01029	428	tolB translocation protein TolB; Provisional	99.6
PRK00178	430	tolB translocation protein TolB; Provisional	99.6
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.6
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.6
PRK04792	448	tolB translocation protein TolB; Provisional	99.59
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.58
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.57
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.56
PRK00178	430	tolB translocation protein TolB; Provisional	99.56
KOG2321	703	consensus WD40 repeat protein [General function pr	99.55
KOG2315	566	consensus Predicted translation initiation factor	99.51
PRK01029	428	tolB translocation protein TolB; Provisional	99.5
KOG4547	541	consensus WD40 repeat-containing protein [General	99.49
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.49
KOG2315	566	consensus Predicted translation initiation factor	99.48
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.48
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.46
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.45
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.43
KOG4547	541	consensus WD40 repeat-containing protein [General	99.42
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.41
PRK04043	419	tolB translocation protein TolB; Provisional	99.37
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.35
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.35
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.35
PRK04043	419	tolB translocation protein TolB; Provisional	99.34
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.34
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.33
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.32
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.31
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.31
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.3
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.3
COG4946	668	Uncharacterized protein related to the periplasmic	99.28
KOG2314	698	consensus Translation initiation factor 3, subunit	99.27
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.19
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	99.17
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.17
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.16
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.15
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.13
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.1
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.1
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.1
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.06
KOG2695	425	consensus WD40 repeat protein [General function pr	99.05
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.04
KOG1008	783	consensus Uncharacterized conserved protein, conta	99.04
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.03
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	99.01
KOG2695	425	consensus WD40 repeat protein [General function pr	98.99
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.99
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.97
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.96
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.94
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.88
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.87
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.87
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.87
COG4946	668	Uncharacterized protein related to the periplasmic	98.87
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.85
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.83
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.82
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.78
KOG2314	698	consensus Translation initiation factor 3, subunit	98.77
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.76
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.74
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.73
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.7
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.7
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.64
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.62
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.62
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.6
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.59
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.55
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.55
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.55
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.53
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.51
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.51
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.51
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.51
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.48
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.48
PRK02888	635	nitrous-oxide reductase; Validated	98.47
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.42
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.41
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.39
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.38
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.36
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.35
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.33
COG3391	381	Uncharacterized conserved protein [Function unknow	98.32
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.29
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.27
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.26
PRK02888	635	nitrous-oxide reductase; Validated	98.2
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.19
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.17
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.09
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.06
COG3391	381	Uncharacterized conserved protein [Function unknow	98.01
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.99
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.99
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.97
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.91
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.9
KOG2395	644	consensus Protein involved in vacuole import and d	97.9
KOG2444	238	consensus WD40 repeat protein [General function pr	97.83
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.81
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.79
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.78
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.78
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.77
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.76
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.74
KOG3621	726	consensus WD40 repeat-containing protein [General	97.73
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.72
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.7
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.69
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.69
KOG3621	726	consensus WD40 repeat-containing protein [General	97.64
PRK13616	591	lipoprotein LpqB; Provisional	97.61
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.55
KOG2395	644	consensus Protein involved in vacuole import and d	97.55
PRK10115	686	protease 2; Provisional	97.53
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.47
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.47
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.45
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.42
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.38
PRK13616	591	lipoprotein LpqB; Provisional	97.37
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.36
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.31
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.28
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.28
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.27
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.23
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	97.21
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.04
KOG2444	238	consensus WD40 repeat protein [General function pr	97.01
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.9
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.81
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.8
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	96.77
KOG2247	615	consensus WD40 repeat-containing protein [General	96.69
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.66
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.62
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.61
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.59
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.53
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.39
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.35
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.21
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.13
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.98
PHA02713	557	hypothetical protein; Provisional	95.87
PHA02713	557	hypothetical protein; Provisional	95.85
COG5167	776	VID27 Protein involved in vacuole import and degra	95.8
PRK10115	686	protease 2; Provisional	95.75
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.67
KOG2377	657	consensus Uncharacterized conserved protein [Funct	95.63
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.49
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.43
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.42
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	95.4
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	95.37
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.25
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	95.1
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.92
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.92
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.78
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.74
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.7
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.62
PHA03098	534	kelch-like protein; Provisional	94.53
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.43
KOG2377	657	consensus Uncharacterized conserved protein [Funct	94.31
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	94.17
COG5167	776	VID27 Protein involved in vacuole import and degra	93.98
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	93.93
PRK13684	334	Ycf48-like protein; Provisional	93.84
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	93.8
KOG2247	615	consensus WD40 repeat-containing protein [General	93.8
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	93.46
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	93.15
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.03
PHA03098	534	kelch-like protein; Provisional	92.98
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	92.83
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	92.66
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	92.53
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	92.31
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	92.09
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	91.84
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	91.83
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	91.62
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	91.54
COG4590	733	ABC-type uncharacterized transport system, permeas	91.52
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	91.49
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	91.47
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	91.18
PF13449	326	Phytase-like: Esterase-like activity of phytase	91.18
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	91.08
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	91.04
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	90.96
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	90.86
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	90.78
PHA02790	480	Kelch-like protein; Provisional	90.58
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	89.29
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	88.83
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	88.7
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	88.35
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	88.29
COG1770	682	PtrB Protease II [Amino acid transport and metabol	88.15
PF14727	418	PHTB1_N: PTHB1 N-terminus	88.14
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	87.88
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	87.77
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	87.61
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	87.54
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	87.39
COG4590	733	ABC-type uncharacterized transport system, permeas	86.89
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	86.64
PF14727	418	PHTB1_N: PTHB1 N-terminus	86.31
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	86.1
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	85.41
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	84.9
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	84.75
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	84.5
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	84.13
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	84.11
PF13449	326	Phytase-like: Esterase-like activity of phytase	84.1
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	83.94
PLN00033	398	photosystem II stability/assembly factor; Provisio	83.69
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	82.24
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	82.19
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	81.84
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	80.26

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=100.00  E-value=1.4e-46  Score=285.44  Aligned_cols=340  Identities=54%  Similarity=0.916  Sum_probs=283.9

Q ss_pred             CCcceeeecccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEE
Q 019059            3 GGSSGIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFS   82 (346)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~   82 (346)
                      |++.+++|||++++|+++....+.+..+|++|+.+++.+|+|.++++++++..+..+.++.|.++|+.++-+|..+.+++
T Consensus         1 ~~s~~liyGle~qAR~lT~qtad~d~icFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ila   80 (370)
T KOG1007|consen    1 GDSSGLIYGLEYQARCLTPQTADRDHICFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILA   80 (370)
T ss_pred             CCcccceeeeeeeeeecCccccCccceEEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEE
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeecCCc----ceEEEEecCcccCCCCCccceeeeeee-ccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCC-C
Q 019059           83 TVFSTGES----YGAAIWQIPELYGQLNSPQLERIAALD-AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNK-N  156 (346)
Q Consensus        83 ~~~~~~~d----~~i~vw~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~-~  156 (346)
                      +++..-.|    ..+.||.++++.+.....+.+.+..+. .+-+.|.|+.|.|++..  +++-.|..|.+|+++.+.. .
T Consensus        81 T~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~k--lasm~dn~i~l~~l~ess~~v  158 (370)
T KOG1007|consen   81 TVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDK--LASMDDNNIVLWSLDESSKIV  158 (370)
T ss_pred             EEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCe--eEEeccCceEEEEcccCcchh
Confidence            98763333    357899999887776666777777776 56679999999998884  5555699999999998765 3


Q ss_pred             ceeeecccCCCceeeEEEEeCC-CCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCe
Q 019059          157 AQVQSKQSSGMLHYLSGGAWDP-HDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESG  232 (346)
Q Consensus       157 ~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~  232 (346)
                      ..+......++....++-+|+| .....+.+..|+++..||+|+..+...+..+|   +..+.|+|+..++|+++++||.
T Consensus       159 aev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgy  238 (370)
T KOG1007|consen  159 AEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGY  238 (370)
T ss_pred             eeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCcc
Confidence            3444444445667888999999 33345555679999999999999998888777   9999999999999999999999


Q ss_pred             EEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCC-------CcccccCCcc---cc
Q 019059          233 IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDEL-------PSESLVESPN---QR  302 (346)
Q Consensus       233 i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-------~~~~~~~~~~---~~  302 (346)
                      |++||.|+.+.|+.++.+|..+|.+|.|+|...++|.+|+.|..|.+|....-..+..       .......+..   ..
T Consensus       239 vriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL  318 (370)
T KOG1007|consen  239 VRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPL  318 (370)
T ss_pred             EEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccc
Confidence            9999999999999999999999999999999889999999999999998876542211       0000011111   12


Q ss_pred             ccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059          303 ANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       303 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~  344 (346)
                      ....+.++..|...|++++|+.-.++++|+-+.||++.|=.+
T Consensus       319 ~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V  360 (370)
T KOG1007|consen  319 QDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSV  360 (370)
T ss_pred             cccccccccccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence            344567888999999999999999999999999999988654

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.9e-47  Score=303.81  Aligned_cols=280  Identities=21%  Similarity=0.339  Sum_probs=251.3

Q ss_pred             eeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCC--CCceEEEEeecCCcce
Q 019059           15 QARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPF--DQRIFSTVFSTGESYG   92 (346)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~~~~~~~d~~   92 (346)
                      ..|++..+.++.++..++.|+.    .|.+.+|.....+   ....+.+|.+.|.++.|+|.  +..++++    +.||+
T Consensus       174 d~rPis~~~fS~ds~~laT~sw----sG~~kvW~~~~~~---~~~~l~gH~~~v~~~~fhP~~~~~~lat~----s~Dgt  242 (459)
T KOG0272|consen  174 DTRPISGCSFSRDSKHLATGSW----SGLVKVWSVPQCN---LLQTLRGHTSRVGAAVFHPVDSDLNLATA----SADGT  242 (459)
T ss_pred             CCCcceeeEeecCCCeEEEeec----CCceeEeecCCcc---eeEEEeccccceeeEEEccCCCccceeee----ccCCc
Confidence            4688999999999999999864    5788999888762   34678899999999999997  3456554    79999


Q ss_pred             EEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeE
Q 019059           93 AAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLS  172 (346)
Q Consensus        93 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~  172 (346)
                      +++|+++         ...++..+.+|...|..++|+|+|++ +.+++.|.+-++||++++....     ...+|...|.
T Consensus       243 vklw~~~---------~e~~l~~l~gH~~RVs~VafHPsG~~-L~TasfD~tWRlWD~~tk~ElL-----~QEGHs~~v~  307 (459)
T KOG0272|consen  243 VKLWKLS---------QETPLQDLEGHLARVSRVAFHPSGKF-LGTASFDSTWRLWDLETKSELL-----LQEGHSKGVF  307 (459)
T ss_pred             eeeeccC---------CCcchhhhhcchhhheeeeecCCCce-eeecccccchhhcccccchhhH-----hhcccccccc
Confidence            9999998         56889999999999999999999995 6777899999999999765332     2357888999


Q ss_pred             EEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeec
Q 019059          173 GGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP  249 (346)
Q Consensus       173 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  249 (346)
                      +++|+|||..+++|+.|..-+|||+++++++..+. +|   |.+|+|+|+|- .++||+.|++++|||+|. ...+.++.
T Consensus       308 ~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~-gH~k~I~~V~fsPNGy-~lATgs~Dnt~kVWDLR~-r~~ly~ip  384 (459)
T KOG0272|consen  308 SIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLA-GHIKEILSVAFSPNGY-HLATGSSDNTCKVWDLRM-RSELYTIP  384 (459)
T ss_pred             eeEecCCCceeeccCccchhheeecccCcEEEEec-ccccceeeEeECCCce-EEeecCCCCcEEEeeecc-cccceecc
Confidence            99999999999999999999999999999999887 68   99999999996 999999999999999998 66799999


Q ss_pred             CCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcE
Q 019059          250 GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWI  329 (346)
Q Consensus       250 ~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  329 (346)
                      +|.+-|+.|+|+|....+|+|++.|++++||..++                   +.+++++.||.+.|.+++.+|++. .
T Consensus       385 AH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~-------------------~~~~ksLaGHe~kV~s~Dis~d~~-~  444 (459)
T KOG0272|consen  385 AHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRT-------------------WSPLKSLAGHEGKVISLDISPDSQ-A  444 (459)
T ss_pred             cccchhhheEecccCCeEEEEcccCcceeeecCCC-------------------cccchhhcCCccceEEEEeccCCc-e
Confidence            99999999999995549999999999999999998                   999999999999999999999998 8


Q ss_pred             EEEeecCCeEEEee
Q 019059          330 FASLSYDGRVRNHM  343 (346)
Q Consensus       330 l~s~~~d~~v~vw~  343 (346)
                      +++++.|+++++|.
T Consensus       445 i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  445 IATSSFDRTIKLWR  458 (459)
T ss_pred             EEEeccCceeeecc
Confidence            99999999999995

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.4e-44  Score=284.32  Aligned_cols=286  Identities=20%  Similarity=0.300  Sum_probs=243.0

Q ss_pred             ccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcc
Q 019059           12 LKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESY   91 (346)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~   91 (346)
                      +..+..++-++.++|++.+++.|.    .+..+++|++..+.+.   .+..+|...|.|++|+||++.|+++    +.||
T Consensus       111 ~~GH~e~Vl~~~fsp~g~~l~tGs----GD~TvR~WD~~TeTp~---~t~KgH~~WVlcvawsPDgk~iASG----~~dg  179 (480)
T KOG0271|consen  111 IAGHGEAVLSVQFSPTGSRLVTGS----GDTTVRLWDLDTETPL---FTCKGHKNWVLCVAWSPDGKKIASG----SKDG  179 (480)
T ss_pred             cCCCCCcEEEEEecCCCceEEecC----CCceEEeeccCCCCcc---eeecCCccEEEEEEECCCcchhhcc----ccCC
Confidence            344455667778888888998873    6788999998887543   4556899999999999999999984    6999


Q ss_pred             eEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeec-----CCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCC
Q 019059           92 GAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWS-----SGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG  166 (346)
Q Consensus        92 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~  166 (346)
                      .|++||...        ..+.-..+.+|...|++++|.|     ..+ .+++++.||.|+|||+..+...     ....+
T Consensus       180 ~I~lwdpkt--------g~~~g~~l~gH~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~~~~~-----~~lsg  245 (480)
T KOG0271|consen  180 SIRLWDPKT--------GQQIGRALRGHKKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKLGTCV-----RTLSG  245 (480)
T ss_pred             eEEEecCCC--------CCcccccccCcccceeEEeecccccCCCcc-ceecccCCCCEEEEEccCceEE-----EEecc
Confidence            999999762        2345567899999999999975     344 4667788999999999854422     22357


Q ss_pred             CceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeC-----------CCCC-----------
Q 019059          167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYD-----------TKKK-----------  221 (346)
Q Consensus       167 ~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~-----------~~~~-----------  221 (346)
                      |..+|+++.|--+ .++++++.|++|++|+...|.+.+.+. +|   |+.++.+           |.+.           
T Consensus       246 HT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lk-GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~  323 (480)
T KOG0271|consen  246 HTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELK-GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKK  323 (480)
T ss_pred             CccceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhc-ccchheeeeeccchhhhhccccccccccCCChHHHHHH
Confidence            8899999999753 578899999999999999999988887 55   8888877           2222           


Q ss_pred             -------------cEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCC
Q 019059          222 -------------HLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHD  288 (346)
Q Consensus       222 -------------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  288 (346)
                                   ..+++|++|.++.+|+....++++..+.+|..-|+.+.||||+ +++|++|.|.+|++||.++    
T Consensus       324 Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~-r~IASaSFDkSVkLW~g~t----  398 (480)
T KOG0271|consen  324 ALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDG-RYIASASFDKSVKLWDGRT----  398 (480)
T ss_pred             HHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCc-cEEEEeecccceeeeeCCC----
Confidence                         2599999999999999988788999999999999999999999 9999999999999999999    


Q ss_pred             CCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          289 ELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                                     ++.+.++.+|-.+|+.++|+.|.+ +|++||.|.++++|++.
T Consensus       399 ---------------Gk~lasfRGHv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V~  439 (480)
T KOG0271|consen  399 ---------------GKFLASFRGHVAAVYQVAWSADSR-LLVSGSKDSTLKVWDVR  439 (480)
T ss_pred             ---------------cchhhhhhhccceeEEEEeccCcc-EEEEcCCCceEEEEEee
Confidence                           999999999999999999999986 99999999999999985

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.8e-44  Score=282.63  Aligned_cols=285  Identities=19%  Similarity=0.306  Sum_probs=243.3

Q ss_pred             eecccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecC-----CCCceEEE
Q 019059            9 GYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCP-----FDQRIFST   83 (346)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-----~~~~l~~~   83 (346)
                      ++.++.+..|+.++.++|++.+++.|.    .+|.|.+|+  +......-+.+.+|...|++++|.|     ..++|++ 
T Consensus       150 ~~t~KgH~~WVlcvawsPDgk~iASG~----~dg~I~lwd--pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las-  222 (480)
T KOG0271|consen  150 LFTCKGHKNWVLCVAWSPDGKKIASGS----KDGSIRLWD--PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLAS-  222 (480)
T ss_pred             ceeecCCccEEEEEEECCCcchhhccc----cCCeEEEec--CCCCCcccccccCcccceeEEeecccccCCCccceec-
Confidence            455666778999999999999999885    689999995  3344456688999999999999976     3455555 


Q ss_pred             EeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecc
Q 019059           84 VFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQ  163 (346)
Q Consensus        84 ~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~  163 (346)
                         ++.||.++|||+.         .+.++..+.+|+.+|+|++|--+|  ++++++.|++|++|+...+.....+    
T Consensus       223 ---~skDg~vrIWd~~---------~~~~~~~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~~~r~l----  284 (480)
T KOG0271|consen  223 ---SSKDGSVRIWDTK---------LGTCVRTLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGKLCREL----  284 (480)
T ss_pred             ---ccCCCCEEEEEcc---------CceEEEEeccCccceEEEEEcCCc--eEEecCCCceEEEEEccchhHHHhh----
Confidence               4899999999998         678999999999999999997555  4888899999999999876543333    


Q ss_pred             cCCCceeeEEEEeC-----------CCCC-------------------------cEEEEecCCeEEEEEccCCC-cccee
Q 019059          164 SSGMLHYLSGGAWD-----------PHDV-------------------------NAVAATCESSVQFWDLRSMG-KTNSI  206 (346)
Q Consensus       164 ~~~~~~~v~~~~~~-----------~~~~-------------------------~l~~~~~d~~i~i~d~~~~~-~~~~~  206 (346)
                       .+|...|+.++.+           |.++                         .+++++.|.++.+|+....+ ++..+
T Consensus       285 -kGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rm  363 (480)
T KOG0271|consen  285 -KGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRM  363 (480)
T ss_pred             -cccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhh
Confidence             4566677777655           3333                         49999999999999987655 44444


Q ss_pred             eccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecC
Q 019059          207 EHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVS  283 (346)
Q Consensus       207 ~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~  283 (346)
                      . +|   |+.+.|+||+. ++++++.|+.|++||.++ ++.+.+|++|-..|+.++|+.|. ++|++||.|.++++||++
T Consensus       364 t-gHq~lVn~V~fSPd~r-~IASaSFDkSVkLW~g~t-Gk~lasfRGHv~~VYqvawsaDs-RLlVS~SkDsTLKvw~V~  439 (480)
T KOG0271|consen  364 T-GHQALVNHVSFSPDGR-YIASASFDKSVKLWDGRT-GKFLASFRGHVAAVYQVAWSADS-RLLVSGSKDSTLKVWDVR  439 (480)
T ss_pred             h-chhhheeeEEECCCcc-EEEEeecccceeeeeCCC-cchhhhhhhccceeEEEEeccCc-cEEEEcCCCceEEEEEee
Confidence            4 67   99999999999 999999999999999998 66899999999999999999999 999999999999999999


Q ss_pred             CCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEee
Q 019059          284 TSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHM  343 (346)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~  343 (346)
                      +                   .++...+.+|...|.+++|+|||. .+++|+.|+.+++|.
T Consensus       440 t-------------------kKl~~DLpGh~DEVf~vDwspDG~-rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  440 T-------------------KKLKQDLPGHADEVFAVDWSPDGQ-RVASGGKDKVLRLWR  479 (480)
T ss_pred             e-------------------eeecccCCCCCceEEEEEecCCCc-eeecCCCceEEEeec
Confidence            9                   889999999999999999999998 899999999999995

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2e-44  Score=286.62  Aligned_cols=243  Identities=20%  Similarity=0.299  Sum_probs=218.9

Q ss_pred             eccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCC-CCcEEEEe
Q 019059           62 FSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSG-RHDKLVSI  140 (346)
Q Consensus        62 ~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~  140 (346)
                      .+-..+|..+.|++++..++++    +-+|.++||+.+         +...+.++.+|.+.|.++.|+|.. ...+++++
T Consensus       172 ~gd~rPis~~~fS~ds~~laT~----swsG~~kvW~~~---------~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s  238 (459)
T KOG0272|consen  172 VGDTRPISGCSFSRDSKHLATG----SWSGLVKVWSVP---------QCNLLQTLRGHTSRVGAAVFHPVDSDLNLATAS  238 (459)
T ss_pred             ccCCCcceeeEeecCCCeEEEe----ecCCceeEeecC---------CcceeEEEeccccceeeEEEccCCCccceeeec
Confidence            3556899999999999998885    799999999998         788999999999999999999983 43477778


Q ss_pred             cCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeC
Q 019059          141 DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYD  217 (346)
Q Consensus       141 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~  217 (346)
                      .||++++|++.+....     ....+|...|..++|+|+|++|.+++.|.+-++||+++++.+.... +|   |.+++|+
T Consensus       239 ~Dgtvklw~~~~e~~l-----~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QE-GHs~~v~~iaf~  312 (459)
T KOG0272|consen  239 ADGTVKLWKLSQETPL-----QDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQE-GHSKGVFSIAFQ  312 (459)
T ss_pred             cCCceeeeccCCCcch-----hhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhc-ccccccceeEec
Confidence            9999999999865433     3345678899999999999999999999999999999998877655 77   9999999


Q ss_pred             CCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccC
Q 019059          218 TKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVE  297 (346)
Q Consensus       218 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  297 (346)
                      |+|. ++++|+.|..-+|||+|+ ..++..+.+|..+|.+|.|+|+| ..|||||.|++++|||++.             
T Consensus       313 ~DGS-L~~tGGlD~~~RvWDlRt-gr~im~L~gH~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~-------------  376 (459)
T KOG0272|consen  313 PDGS-LAATGGLDSLGRVWDLRT-GRCIMFLAGHIKEILSVAFSPNG-YHLATGSSDNTCKVWDLRM-------------  376 (459)
T ss_pred             CCCc-eeeccCccchhheeeccc-CcEEEEecccccceeeEeECCCc-eEEeecCCCCcEEEeeecc-------------
Confidence            9999 999999999999999998 66899999999999999999999 9999999999999999998             


Q ss_pred             CccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          298 SPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                            ..++.++.+|..-|+.|.|+|....+|++++.|++++||.-+
T Consensus       377 ------r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~  418 (459)
T KOG0272|consen  377 ------RSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTR  418 (459)
T ss_pred             ------cccceecccccchhhheEecccCCeEEEEcccCcceeeecCC
Confidence                  788999999999999999999666699999999999999754

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=4.5e-40  Score=250.31  Aligned_cols=287  Identities=16%  Similarity=0.227  Sum_probs=244.6

Q ss_pred             ccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcc
Q 019059           12 LKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESY   91 (346)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~   91 (346)
                      |+.+...|.++.+.++..+++.+    +.++.+.+|+....++.-.+.   -....|..++|+|.++.+++    ||-|.
T Consensus        51 LkGH~~Ki~~~~ws~Dsr~ivSa----SqDGklIvWDs~TtnK~haip---l~s~WVMtCA~sPSg~~VAc----GGLdN  119 (343)
T KOG0286|consen   51 LKGHLNKIYAMDWSTDSRRIVSA----SQDGKLIVWDSFTTNKVHAIP---LPSSWVMTCAYSPSGNFVAC----GGLDN  119 (343)
T ss_pred             ecccccceeeeEecCCcCeEEee----ccCCeEEEEEcccccceeEEe---cCceeEEEEEECCCCCeEEe----cCcCc
Confidence            34445567888899999888876    478999999988876543332   24578999999999988777    58999


Q ss_pred             eEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceee
Q 019059           92 GAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYL  171 (346)
Q Consensus        92 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v  171 (346)
                      ...||++..+..   ....+..+.+.+|++-+.|+.|-+|+.  +++++.|.+..+||++++++...+     .+|...|
T Consensus       120 ~Csiy~ls~~d~---~g~~~v~r~l~gHtgylScC~f~dD~~--ilT~SGD~TCalWDie~g~~~~~f-----~GH~gDV  189 (343)
T KOG0286|consen  120 KCSIYPLSTRDA---EGNVRVSRELAGHTGYLSCCRFLDDNH--ILTGSGDMTCALWDIETGQQTQVF-----HGHTGDV  189 (343)
T ss_pred             eeEEEecccccc---cccceeeeeecCccceeEEEEEcCCCc--eEecCCCceEEEEEcccceEEEEe-----cCCcccE
Confidence            999999984321   123356677899999999999999776  888888999999999987754433     4688899


Q ss_pred             EEEEeCC-CCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceee
Q 019059          172 SGGAWDP-HDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQE  247 (346)
Q Consensus       172 ~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  247 (346)
                      .++.++| +++.+++++.|+..++||+|.+.++.+|. +|   |+++.|.|+|. -|++|++|++.++||+|. .+.+..
T Consensus       190 ~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~-ghesDINsv~ffP~G~-afatGSDD~tcRlyDlRa-D~~~a~  266 (343)
T KOG0286|consen  190 MSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFE-GHESDINSVRFFPSGD-AFATGSDDATCRLYDLRA-DQELAV  266 (343)
T ss_pred             EEEecCCCCCCeEEecccccceeeeeccCcceeEeec-ccccccceEEEccCCC-eeeecCCCceeEEEeecC-CcEEee
Confidence            9999999 88999999999999999999999999998 67   99999999998 999999999999999997 555666


Q ss_pred             ecC--CCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCC
Q 019059          248 LPG--HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSR  325 (346)
Q Consensus       248 ~~~--~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  325 (346)
                      +..  -..+|++++||..| ++|++|..|..+.+||.-.                   ++.+..+.+|...|+++..+||
T Consensus       267 ys~~~~~~gitSv~FS~SG-RlLfagy~d~~c~vWDtlk-------------------~e~vg~L~GHeNRvScl~~s~D  326 (343)
T KOG0286|consen  267 YSHDSIICGITSVAFSKSG-RLLFAGYDDFTCNVWDTLK-------------------GERVGVLAGHENRVSCLGVSPD  326 (343)
T ss_pred             eccCcccCCceeEEEcccc-cEEEeeecCCceeEeeccc-------------------cceEEEeeccCCeeEEEEECCC
Confidence            652  33689999999999 9999999999999999988                   8999999999999999999999


Q ss_pred             CCcEEEEeecCCeEEEee
Q 019059          326 EPWIFASLSYDGRVRNHM  343 (346)
Q Consensus       326 ~~~~l~s~~~d~~v~vw~  343 (346)
                      |- .+++||+|.++|||.
T Consensus       327 G~-av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  327 GM-AVATGSWDSTLRIWA  343 (343)
T ss_pred             Cc-EEEecchhHheeecC
Confidence            97 999999999999995

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=100.00  E-value=3.4e-40  Score=265.06  Aligned_cols=310  Identities=21%  Similarity=0.349  Sum_probs=247.9

Q ss_pred             CcceEEEeecccC-CCCeEEEEEec--CC----------------------CCeEEEeeeeccccceEEeeecCCCCceE
Q 019059           27 DHTSFLTGTLSLK-EENEVHLLRLS--SG----------------------GTELICEGLFSHPNEIWDLSSCPFDQRIF   81 (346)
Q Consensus        27 ~~~~~~~g~~~~~-~~~~i~~~~~~--~~----------------------~~~~~~~~~~~h~~~v~~~~~~~~~~~l~   81 (346)
                      ..+||+.|+.+.+ .++.+.+-++.  ..                      ...+.....+.|.++|+.++..|+.+.++
T Consensus        61 ~~~rliLGthTs~~~~n~L~iA~v~lp~~~~~~~~~~~~~e~~e~~g~~~~~~~v~i~~~i~h~gEVnRaRymPQnp~iV  140 (422)
T KOG0264|consen   61 SKQRLILGTHTSGSEQNYLVIASVQLPTDDAQFEDKHYDEERGEFGGFGAVSGKVEISQKINHDGEVNRARYMPQNPNIV  140 (422)
T ss_pred             eeEEEEEEeecCCCCccEEEEEeecCCCcccccccccccccccccCCccccccceEEEEeccCCccchhhhhCCCCCcEE
Confidence            4579999999988 66777776532  10                      11455566788999999999999999999


Q ss_pred             EEEeecCCcceEEEEecCcccCCCC-CccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCC--ce
Q 019059           82 STVFSTGESYGAAIWQIPELYGQLN-SPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKN--AQ  158 (346)
Q Consensus        82 ~~~~~~~~d~~i~vw~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~--~~  158 (346)
                      ++   .+..+.|.|||..+...... .....+-.++.+|+..-++++|++.....+++++.|+.|++||+......  ..
T Consensus       141 At---~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~  217 (422)
T KOG0264|consen  141 AT---KTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVV  217 (422)
T ss_pred             Ee---cCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccc
Confidence            97   47778999999875422211 11445556888999888999999998877888899999999999865442  12


Q ss_pred             eeecccCCCceeeEEEEeCCCCCc-EEEEecCCeEEEEEccC--CCccceeeccc---eeEEEeCCCCCcEEEEecCCCe
Q 019059          159 VQSKQSSGMLHYLSGGAWDPHDVN-AVAATCESSVQFWDLRS--MGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESG  232 (346)
Q Consensus       159 ~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~i~d~~~--~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~  232 (346)
                      .......+|...|..++|++.... +.+++.|+.+.|||+|+  .++..... +|   ++|++|+|.+.++||+|+.|++
T Consensus       218 ~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~-ah~~~vn~~~fnp~~~~ilAT~S~D~t  296 (422)
T KOG0264|consen  218 DPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVK-AHSAEVNCVAFNPFNEFILATGSADKT  296 (422)
T ss_pred             cceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccc-ccCCceeEEEeCCCCCceEEeccCCCc
Confidence            222335678889999999996655 55667899999999995  33333333 55   9999999999999999999999


Q ss_pred             EEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccccc
Q 019059          233 IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD  312 (346)
Q Consensus       233 i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (346)
                      |.+||+|+...++.++.+|...|.+|.|+|.....||+++.|+.+.|||+.....+.. .+...    ....++++...|
T Consensus       297 V~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~-~eda~----dgppEllF~HgG  371 (422)
T KOG0264|consen  297 VALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS-PEDAE----DGPPELLFIHGG  371 (422)
T ss_pred             EEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccC-hhhhc----cCCcceeEEecC
Confidence            9999999999999999999999999999999989999999999999999987433322 11111    123678899999


Q ss_pred             ccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          313 YEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       313 ~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      |...|.++.|+|+.++.++++++|+.+.||.+.
T Consensus       372 H~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  372 HTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             cccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            999999999999999999999999999999864

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=7.7e-40  Score=243.71  Aligned_cols=264  Identities=13%  Similarity=0.259  Sum_probs=223.6

Q ss_pred             CCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeec
Q 019059           39 KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA  118 (346)
Q Consensus        39 ~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~  118 (346)
                      +.+..|++|+....   +...++....+.|+.+...|+++.|+++     ....|++||+..       ....++.++.+
T Consensus        17 ~YDhTIRfWqa~tG---~C~rTiqh~dsqVNrLeiTpdk~~LAaa-----~~qhvRlyD~~S-------~np~Pv~t~e~   81 (311)
T KOG0315|consen   17 GYDHTIRFWQALTG---ICSRTIQHPDSQVNRLEITPDKKDLAAA-----GNQHVRLYDLNS-------NNPNPVATFEG   81 (311)
T ss_pred             cCcceeeeeehhcC---eEEEEEecCccceeeEEEcCCcchhhhc-----cCCeeEEEEccC-------CCCCceeEEec
Confidence            56777877776654   3444444444899999999999999886     445899999982       34458899999


Q ss_pred             cCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEcc
Q 019059          119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLR  198 (346)
Q Consensus       119 ~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~  198 (346)
                      |...|.++.|..+|+. ++++++||.++|||++.......+      .+..+|+++..+|+...|+++..+|.|++||+.
T Consensus        82 h~kNVtaVgF~~dgrW-MyTgseDgt~kIWdlR~~~~qR~~------~~~spVn~vvlhpnQteLis~dqsg~irvWDl~  154 (311)
T KOG0315|consen   82 HTKNVTAVGFQCDGRW-MYTGSEDGTVKIWDLRSLSCQRNY------QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLG  154 (311)
T ss_pred             cCCceEEEEEeecCeE-EEecCCCceEEEEeccCcccchhc------cCCCCcceEEecCCcceEEeecCCCcEEEEEcc
Confidence            9999999999999996 888899999999999964332222      245699999999999999999999999999999


Q ss_pred             CCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCC-----cceeeecCCCcceEEEEeCCCCCcEEEE
Q 019059          199 SMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK-----APIQELPGHTHWTWAVCCNPEYDGFILS  270 (346)
Q Consensus       199 ~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~~~v~~v~~~~~~~~~l~s  270 (346)
                      +..+...+.++.   |.++...|+|. +++.+...|..++|++-...     .|+..++.|+.-+..+.+||++ ++||+
T Consensus       155 ~~~c~~~liPe~~~~i~sl~v~~dgs-ml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~-k~lat  232 (311)
T KOG0315|consen  155 ENSCTHELIPEDDTSIQSLTVMPDGS-MLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDV-KYLAT  232 (311)
T ss_pred             CCccccccCCCCCcceeeEEEcCCCc-EEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCC-cEEEe
Confidence            988877766444   99999999998 88888899999999986521     3778889999999999999999 99999


Q ss_pred             ecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          271 AGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       271 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      +|.|.+++||+...                  ..+.-..+.+|..++++.+||.++. +|++++.|+.+++|+++
T Consensus       233 ~ssdktv~iwn~~~------------------~~kle~~l~gh~rWvWdc~FS~dg~-YlvTassd~~~rlW~~~  288 (311)
T KOG0315|consen  233 CSSDKTVKIWNTDD------------------FFKLELVLTGHQRWVWDCAFSADGE-YLVTASSDHTARLWDLS  288 (311)
T ss_pred             ecCCceEEEEecCC------------------ceeeEEEeecCCceEEeeeeccCcc-EEEecCCCCceeecccc
Confidence            99999999999997                  1366677889999999999999997 99999999999999985

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=9.6e-39  Score=241.58  Aligned_cols=288  Identities=15%  Similarity=0.268  Sum_probs=230.4

Q ss_pred             cccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCC--eEEEeeeeccccceEEeeecCCCCceEEEEeecC
Q 019059           11 GLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGT--ELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTG   88 (346)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~   88 (346)
                      .++.+..++..+...+....+++.   ...+-.+.+|++..+..  ....+.+.+|...|..+..++++++.+++    +
T Consensus        10 tl~gh~d~Vt~la~~~~~~~~l~s---asrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~----s   82 (315)
T KOG0279|consen   10 TLEGHTDWVTALAIKIKNSDILVS---ASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSA----S   82 (315)
T ss_pred             eecCCCceEEEEEeecCCCceEEE---cccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEec----c
Confidence            355566777777766654444443   24567888999876532  23457889999999999999999998885    8


Q ss_pred             CcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCc
Q 019059           89 ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGML  168 (346)
Q Consensus        89 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  168 (346)
                      .|+++++||+.         .+++.+.|.+|...|.+++|++|+++ +++++.|.+|++|+.-... ..+.  .. ..+.
T Consensus        83 wD~~lrlWDl~---------~g~~t~~f~GH~~dVlsva~s~dn~q-ivSGSrDkTiklwnt~g~c-k~t~--~~-~~~~  148 (315)
T KOG0279|consen   83 WDGTLRLWDLA---------TGESTRRFVGHTKDVLSVAFSTDNRQ-IVSGSRDKTIKLWNTLGVC-KYTI--HE-DSHR  148 (315)
T ss_pred             ccceEEEEEec---------CCcEEEEEEecCCceEEEEecCCCce-eecCCCcceeeeeeecccE-EEEE--ec-CCCc
Confidence            99999999999         77899999999999999999999996 8888999999999987533 2222  21 1236


Q ss_pred             eeeEEEEeCCC--CCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCc
Q 019059          169 HYLSGGAWDPH--DVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA  243 (346)
Q Consensus       169 ~~v~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  243 (346)
                      ..|.++.|+|+  ...|+.++.|+++++||+++.+....+. +|   ++.++++|||. +.++|+.||.+.+||++. ++
T Consensus       149 ~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~-gh~~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~-~k  225 (315)
T KOG0279|consen  149 EWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFI-GHSGYVNTVTVSPDGS-LCASGGKDGEAMLWDLNE-GK  225 (315)
T ss_pred             CcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccc-cccccEEEEEECCCCC-EEecCCCCceEEEEEccC-Cc
Confidence            68999999998  6778899999999999999988777776 56   99999999998 999999999999999998 54


Q ss_pred             ceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccccc---------cc
Q 019059          244 PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD---------YE  314 (346)
Q Consensus       244 ~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~  314 (346)
                      .+..+. |...|.+++|+|+. ..|+.+. +..|+|||+.+                   ..++..+..         ..
T Consensus       226 ~lysl~-a~~~v~sl~fspnr-ywL~~at-~~sIkIwdl~~-------------------~~~v~~l~~d~~g~s~~~~~  283 (315)
T KOG0279|consen  226 NLYSLE-AFDIVNSLCFSPNR-YWLCAAT-ATSIKIWDLES-------------------KAVVEELKLDGIGPSSKAGD  283 (315)
T ss_pred             eeEecc-CCCeEeeEEecCCc-eeEeecc-CCceEEEeccc-------------------hhhhhhccccccccccccCC
Confidence            566664 78999999999997 5555554 55699999998                   444443321         12


Q ss_pred             ceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          315 DSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       315 ~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      -...+++|+++|. .|++|-.|+.|++|.+.
T Consensus       284 ~~clslaws~dG~-tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  284 PICLSLAWSADGQ-TLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             cEEEEEEEcCCCc-EEEeeecCCcEEEEEee
Confidence            2357889999998 88899999999999875

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9e-40  Score=244.05  Aligned_cols=281  Identities=22%  Similarity=0.322  Sum_probs=236.8

Q ss_pred             cceEEEeec---ccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCC
Q 019059           28 HTSFLTGTL---SLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQ  104 (346)
Q Consensus        28 ~~~~~~g~~---~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~  104 (346)
                      ..|+++++.   .+...+.++++++.+.++... -.-+.-.+.+.+++|++.....+.++   ..||.+++||+..    
T Consensus        21 ~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e-~~s~d~~D~LfdV~Wse~~e~~~~~a---~GDGSLrl~d~~~----   92 (311)
T KOG0277|consen   21 ENRLAVATAQHYGLAGNGRLFILEVTDPKGIQE-CQSYDTEDGLFDVAWSENHENQVIAA---SGDGSLRLFDLTM----   92 (311)
T ss_pred             cchhheeehhhcccccCceEEEEecCCCCCeEE-EEeeecccceeEeeecCCCcceEEEE---ecCceEEEeccCC----
Confidence            345555542   345679999999986544443 44455678999999999887777764   6899999999763    


Q ss_pred             CCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCc-E
Q 019059          105 LNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVN-A  183 (346)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l  183 (346)
                          ...+++.++.|+.+|.++.|++..++.+++++.|++|++|+...++....     ..+|...|+..+|+|.... +
T Consensus        93 ----~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~T-----f~gh~~~Iy~a~~sp~~~nlf  163 (311)
T KOG0277|consen   93 ----PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQT-----FNGHNSCIYQAAFSPHIPNLF  163 (311)
T ss_pred             ----CCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEe-----ecCCccEEEEEecCCCCCCeE
Confidence                55789999999999999999999888899999999999999986554333     4568889999999997655 5


Q ss_pred             EEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEe
Q 019059          184 VAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCC  260 (346)
Q Consensus       184 ~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~  260 (346)
                      ++++.|+++++||++.......+. .|   +.++.|+..++++++||+.|+.|+.||+|+.+.|+..+.+|.-.|..++|
T Consensus       164 as~Sgd~~l~lwdvr~~gk~~~i~-ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~  242 (311)
T KOG0277|consen  164 ASASGDGTLRLWDVRSPGKFMSIE-AHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKF  242 (311)
T ss_pred             EEccCCceEEEEEecCCCceeEEE-eccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEec
Confidence            666789999999999765555555 45   99999999998899999999999999999999999999999999999999


Q ss_pred             CCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEE
Q 019059          261 NPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVR  340 (346)
Q Consensus       261 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~  340 (346)
                      ||....+||+++.|=+++|||...                  ....+.+...|+.-|..++|++..+..+|+++.|..++
T Consensus       243 Sph~~~lLaSasYDmT~riw~~~~------------------~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~  304 (311)
T KOG0277|consen  243 SPHHASLLASASYDMTVRIWDPER------------------QDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLY  304 (311)
T ss_pred             CcchhhHhhhccccceEEeccccc------------------chhhhhhhhccceEEeccccccccCceeeeccccccee
Confidence            999888999999999999999986                  25667778889999999999998777999999999999


Q ss_pred             Eeee
Q 019059          341 NHML  344 (346)
Q Consensus       341 vw~~  344 (346)
                      ||+.
T Consensus       305 Vw~p  308 (311)
T KOG0277|consen  305 VWNP  308 (311)
T ss_pred             eecc
Confidence            9983

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=9.1e-41  Score=264.76  Aligned_cols=276  Identities=19%  Similarity=0.285  Sum_probs=234.9

Q ss_pred             EeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEe
Q 019059           18 CISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQ   97 (346)
Q Consensus        18 ~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~   97 (346)
                      .|..+.+.+++.|+++|+.    .|++.+|+...-   -....+..|..+|.++.|++++..+++    |+.+|.|++|+
T Consensus        98 ~V~~v~WtPeGRRLltgs~----SGEFtLWNg~~f---nFEtilQaHDs~Vr~m~ws~~g~wmiS----gD~gG~iKyWq  166 (464)
T KOG0284|consen   98 PVNVVRWTPEGRRLLTGSQ----SGEFTLWNGTSF---NFETILQAHDSPVRTMKWSHNGTWMIS----GDKGGMIKYWQ  166 (464)
T ss_pred             ceeeEEEcCCCceeEeecc----cccEEEecCcee---eHHHHhhhhcccceeEEEccCCCEEEE----cCCCceEEecc
Confidence            5666778999999999964    467777765332   223456689999999999999999998    48999999999


Q ss_pred             cCcccCCCCCccceeeeeeeccC-CceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEe
Q 019059           98 IPELYGQLNSPQLERIAALDAHV-GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAW  176 (346)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~  176 (346)
                      ..          ...++.+..|. ..|++++|+|.... ++++++||.|+|||....+....+     .+|--.|.+++|
T Consensus       167 pn----------mnnVk~~~ahh~eaIRdlafSpnDsk-F~t~SdDg~ikiWdf~~~kee~vL-----~GHgwdVksvdW  230 (464)
T KOG0284|consen  167 PN----------MNNVKIIQAHHAEAIRDLAFSPNDSK-FLTCSDDGTIKIWDFRMPKEERVL-----RGHGWDVKSVDW  230 (464)
T ss_pred             cc----------hhhhHHhhHhhhhhhheeccCCCCce-eEEecCCCeEEEEeccCCchhhee-----ccCCCCcceecc
Confidence            75          45556666664 89999999997774 888899999999999876544444     356668999999


Q ss_pred             CCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCc
Q 019059          177 DPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTH  253 (346)
Q Consensus       177 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  253 (346)
                      +|....+++++.|..|++||.++++++.++. +|   |..+.|+|+++ +|++++.|..++++|+|. .+.+..+++|+.
T Consensus       231 HP~kgLiasgskDnlVKlWDprSg~cl~tlh-~HKntVl~~~f~~n~N-~Llt~skD~~~kv~DiR~-mkEl~~~r~Hkk  307 (464)
T KOG0284|consen  231 HPTKGLIASGSKDNLVKLWDPRSGSCLATLH-GHKNTVLAVKFNPNGN-WLLTGSKDQSCKVFDIRT-MKELFTYRGHKK  307 (464)
T ss_pred             CCccceeEEccCCceeEeecCCCcchhhhhh-hccceEEEEEEcCCCC-eeEEccCCceEEEEehhH-hHHHHHhhcchh
Confidence            9999999999999999999999999999887 55   99999999996 999999999999999996 446889999999


Q ss_pred             ceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccc-cccccceeeEEEeCCCCCcEEEE
Q 019059          254 WTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNS-YSDYEDSVYGLAWSSREPWIFAS  332 (346)
Q Consensus       254 ~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s  332 (346)
                      .++++.|+|-.+.+|.+|+.||.|..|.+..                   .+++.. -.+|...|++++|+|-|. +|++
T Consensus       308 dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~-------------------~~p~~~i~~AHd~~iwsl~~hPlGh-il~t  367 (464)
T KOG0284|consen  308 DVTSLTWHPLNESLFTSGGSDGSVVHWVVGL-------------------EEPLGEIPPAHDGEIWSLAYHPLGH-ILAT  367 (464)
T ss_pred             hheeeccccccccceeeccCCCceEEEeccc-------------------cccccCCCcccccceeeeeccccce-eEee
Confidence            9999999999989999999999999999985                   334333 346999999999999996 9999


Q ss_pred             eecCCeEEEee
Q 019059          333 LSYDGRVRNHM  343 (346)
Q Consensus       333 ~~~d~~v~vw~  343 (346)
                      |+.|.++++|.
T Consensus       368 gsnd~t~rfw~  378 (464)
T KOG0284|consen  368 GSNDRTVRFWT  378 (464)
T ss_pred             cCCCcceeeec
Confidence            99999999995

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=4.5e-39  Score=243.38  Aligned_cols=254  Identities=17%  Similarity=0.268  Sum_probs=213.7

Q ss_pred             EEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCc
Q 019059           56 LICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHD  135 (346)
Q Consensus        56 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  135 (346)
                      .....+.+|++.|..++..+.+..++..   .+.|.++.+|++..    .+...+.+++.+++|...|..+..+++|++ 
T Consensus         6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~s---asrDk~ii~W~L~~----dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~-   77 (315)
T KOG0279|consen    6 VLRGTLEGHTDWVTALAIKIKNSDILVS---ASRDKTIIVWKLTS----DDIKYGVPVRRLTGHSHFVSDVVLSSDGNF-   77 (315)
T ss_pred             eeeeeecCCCceEEEEEeecCCCceEEE---cccceEEEEEEecc----CccccCceeeeeeccceEecceEEccCCce-
Confidence            3446788999999999999988877776   48999999999973    244567889999999999999999999995 


Q ss_pred             EEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeecc-c--ee
Q 019059          136 KLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA-H--VR  212 (346)
Q Consensus       136 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~--v~  212 (346)
                      +++++.|+.+++||+.+++....+     .+|...|.+++|+||.+.+++++.|.+|.+|+............. .  |.
T Consensus        78 alS~swD~~lrlWDl~~g~~t~~f-----~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVs  152 (315)
T KOG0279|consen   78 ALSASWDGTLRLWDLATGESTRRF-----VGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVS  152 (315)
T ss_pred             EEeccccceEEEEEecCCcEEEEE-----EecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEE
Confidence            778899999999999987654444     357789999999999999999999999999999855443333333 2  99


Q ss_pred             EEEeCCCC-CcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCC
Q 019059          213 NVDYDTKK-KHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELP  291 (346)
Q Consensus       213 ~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  291 (346)
                      |+.|+|+. +..+++++.|++|++||+++ -+....+.+|++.++.+++|||| .++++|+.||.+.+||++.       
T Consensus       153 cvrfsP~~~~p~Ivs~s~DktvKvWnl~~-~~l~~~~~gh~~~v~t~~vSpDG-slcasGgkdg~~~LwdL~~-------  223 (315)
T KOG0279|consen  153 CVRFSPNESNPIIVSASWDKTVKVWNLRN-CQLRTTFIGHSGYVNTVTVSPDG-SLCASGGKDGEAMLWDLNE-------  223 (315)
T ss_pred             EEEEcCCCCCcEEEEccCCceEEEEccCC-cchhhccccccccEEEEEECCCC-CEEecCCCCceEEEEEccC-------
Confidence            99999994 33899999999999999998 45778899999999999999999 9999999999999999998       


Q ss_pred             cccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeecC
Q 019059          292 SESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLEK  346 (346)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~~  346 (346)
                                  ++.+..+ +|...|.+++|+|+.- .| ....+..|+|||++.
T Consensus       224 ------------~k~lysl-~a~~~v~sl~fspnry-wL-~~at~~sIkIwdl~~  263 (315)
T KOG0279|consen  224 ------------GKNLYSL-EAFDIVNSLCFSPNRY-WL-CAATATSIKIWDLES  263 (315)
T ss_pred             ------------CceeEec-cCCCeEeeEEecCCce-eE-eeccCCceEEEeccc
Confidence                        7777766 4677899999999864 33 444456699999863

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=6e-40  Score=280.16  Aligned_cols=252  Identities=17%  Similarity=0.268  Sum_probs=218.0

Q ss_pred             eeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCccc----------C------------CCCCccceeeeeeec
Q 019059           61 LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELY----------G------------QLNSPQLERIAALDA  118 (346)
Q Consensus        61 ~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~----------~------------~~~~~~~~~~~~~~~  118 (346)
                      +..-...++|..|++++..++.    |-.|..|++|.+....          .            ..+.......+++.+
T Consensus       374 ~~nt~~~v~ca~fSddssmlA~----Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~G  449 (707)
T KOG0263|consen  374 FHNTYQGVTCAEFSDDSSMLAC----GFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYG  449 (707)
T ss_pred             EEEcCCcceeEeecCCcchhhc----cccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeec
Confidence            3334467999999999986666    4588899999998311          0            011122334456889


Q ss_pred             cCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEcc
Q 019059          119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLR  198 (346)
Q Consensus       119 ~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~  198 (346)
                      |.++|..+.|+|+.+. ++++++|+++++|.+.+......+     .+|..+|..+.|+|.|-++++++.|++-++|...
T Consensus       450 H~GPVyg~sFsPd~rf-LlScSED~svRLWsl~t~s~~V~y-----~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d  523 (707)
T KOG0263|consen  450 HSGPVYGCSFSPDRRF-LLSCSEDSSVRLWSLDTWSCLVIY-----KGHLAPVWDVQFAPRGYYFATASHDQTARLWSTD  523 (707)
T ss_pred             CCCceeeeeecccccc-eeeccCCcceeeeecccceeEEEe-----cCCCcceeeEEecCCceEEEecCCCceeeeeecc
Confidence            9999999999999994 888899999999999965433222     3688899999999999999999999999999999


Q ss_pred             CCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCC
Q 019059          199 SMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDS  275 (346)
Q Consensus       199 ~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~  275 (346)
                      ...+.+.+. +|   |.|+.|+|+.. ++++|+.|.+|++||+.+ +..++.|.+|.++|.+++|||+| ++|++|+.|+
T Consensus       524 ~~~PlRifa-ghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~-G~~VRiF~GH~~~V~al~~Sp~G-r~LaSg~ed~  599 (707)
T KOG0263|consen  524 HNKPLRIFA-GHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVST-GNSVRIFTGHKGPVTALAFSPCG-RYLASGDEDG  599 (707)
T ss_pred             cCCchhhhc-ccccccceEEECCccc-ccccCCCCceEEEEEcCC-CcEEEEecCCCCceEEEEEcCCC-ceEeecccCC
Confidence            988888777 77   99999999998 899999999999999998 66899999999999999999999 9999999999


Q ss_pred             eEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeecC
Q 019059          276 TVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLEK  346 (346)
Q Consensus       276 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~~  346 (346)
                      .|++||+..                   +.++..+.+|.+.|.++.|+.+|. +||+++.|.+|++||+.+
T Consensus       600 ~I~iWDl~~-------------------~~~v~~l~~Ht~ti~SlsFS~dg~-vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  600 LIKIWDLAN-------------------GSLVKQLKGHTGTIYSLSFSRDGN-VLASGGADNSVRLWDLTK  650 (707)
T ss_pred             cEEEEEcCC-------------------CcchhhhhcccCceeEEEEecCCC-EEEecCCCCeEEEEEchh
Confidence            999999998                   899999999999999999999997 999999999999999864

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.7e-38  Score=241.83  Aligned_cols=248  Identities=17%  Similarity=0.220  Sum_probs=215.7

Q ss_pred             eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEE
Q 019059           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV  138 (346)
Q Consensus        59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  138 (346)
                      +.+.+|.+.|.++.|+++.++++++    +.||.+.|||.-         +....+.++-....|..++|+|.|+. +++
T Consensus        49 r~LkGH~~Ki~~~~ws~Dsr~ivSa----SqDGklIvWDs~---------TtnK~haipl~s~WVMtCA~sPSg~~-VAc  114 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWSTDSRRIVSA----SQDGKLIVWDSF---------TTNKVHAIPLPSSWVMTCAYSPSGNF-VAC  114 (343)
T ss_pred             EEecccccceeeeEecCCcCeEEee----ccCCeEEEEEcc---------cccceeEEecCceeEEEEEECCCCCe-EEe
Confidence            7788999999999999999999996    799999999987         56677778778889999999999993 555


Q ss_pred             EecCCeEEEEEcCCCCC-CceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEE
Q 019059          139 SIDEENIFLWSLDCSNK-NAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNV  214 (346)
Q Consensus       139 ~~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~  214 (346)
                      ++-|+...||++.+... ..........+|...+.++.|.+ +.+|++++.|.+..+||+++++....+. +|   |.++
T Consensus       115 GGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~-GH~gDV~sl  192 (343)
T KOG0286|consen  115 GGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFH-GHTGDVMSL  192 (343)
T ss_pred             cCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEec-CCcccEEEE
Confidence            57899999999985421 12223344678899999999997 6679999999999999999999999887 78   9999


Q ss_pred             EeCC-CCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcc
Q 019059          215 DYDT-KKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSE  293 (346)
Q Consensus       215 ~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  293 (346)
                      +++| +++ .+++|+-|+..++||+|. ...+++|.+|+..|++|+|.|+| .-|++|++|++.++||++.         
T Consensus       193 sl~p~~~n-tFvSg~cD~~aklWD~R~-~~c~qtF~ghesDINsv~ffP~G-~afatGSDD~tcRlyDlRa---------  260 (343)
T KOG0286|consen  193 SLSPSDGN-TFVSGGCDKSAKLWDVRS-GQCVQTFEGHESDINSVRFFPSG-DAFATGSDDATCRLYDLRA---------  260 (343)
T ss_pred             ecCCCCCC-eEEecccccceeeeeccC-cceeEeecccccccceEEEccCC-CeeeecCCCceeEEEeecC---------
Confidence            9999 555 999999999999999998 57999999999999999999999 9999999999999999998         


Q ss_pred             cccCCccccccccccccccc--cceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          294 SLVESPNQRANSLLNSYSDY--EDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                                ...+..+...  ..+|++++||..|+ +|.+|..|.++.+||.-
T Consensus       261 ----------D~~~a~ys~~~~~~gitSv~FS~SGR-lLfagy~d~~c~vWDtl  303 (343)
T KOG0286|consen  261 ----------DQELAVYSHDSIICGITSVAFSKSGR-LLFAGYDDFTCNVWDTL  303 (343)
T ss_pred             ----------CcEEeeeccCcccCCceeEEEccccc-EEEeeecCCceeEeecc
Confidence                      6666666532  34799999999997 99999999999999963

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=9.4e-38  Score=266.81  Aligned_cols=299  Identities=18%  Similarity=0.311  Sum_probs=239.3

Q ss_pred             eeeecccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCC----------------------------CCeEEE
Q 019059            7 GIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSG----------------------------GTELIC   58 (346)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~----------------------------~~~~~~   58 (346)
                      -|.|..-.....+.+..++.+...++.|.    .+..|++|.+.+.                            ......
T Consensus       369 ic~YT~~nt~~~v~ca~fSddssmlA~Gf----~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~  444 (707)
T KOG0263|consen  369 ICMYTFHNTYQGVTCAEFSDDSSMLACGF----VDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTS  444 (707)
T ss_pred             EEEEEEEEcCCcceeEeecCCcchhhccc----cccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCcee
Confidence            35555555556677777888888777773    3557777777642                            122233


Q ss_pred             eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEE
Q 019059           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV  138 (346)
Q Consensus        59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  138 (346)
                      +.+.+|.++|..+.|+|+.++|+++    ++|+++++|.+.         +...+..+++|..+|+++.|+|-|-+ +++
T Consensus       445 ~~L~GH~GPVyg~sFsPd~rfLlSc----SED~svRLWsl~---------t~s~~V~y~GH~~PVwdV~F~P~GyY-Fat  510 (707)
T KOG0263|consen  445 RTLYGHSGPVYGCSFSPDRRFLLSC----SEDSSVRLWSLD---------TWSCLVIYKGHLAPVWDVQFAPRGYY-FAT  510 (707)
T ss_pred             EEeecCCCceeeeeecccccceeec----cCCcceeeeecc---------cceeEEEecCCCcceeeEEecCCceE-EEe
Confidence            6689999999999999999999995    799999999999         78888889999999999999999986 777


Q ss_pred             EecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEE
Q 019059          139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVD  215 (346)
Q Consensus       139 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~  215 (346)
                      ++.|++-++|..+.......     ..+|...|.++.|+|+..++++|+.|.++++||..+|..++.|. +|   |.+++
T Consensus       511 as~D~tArLWs~d~~~PlRi-----faghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~-GH~~~V~al~  584 (707)
T KOG0263|consen  511 ASHDQTARLWSTDHNKPLRI-----FAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT-GHKGPVTALA  584 (707)
T ss_pred             cCCCceeeeeecccCCchhh-----hcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEec-CCCCceEEEE
Confidence            78899999999886443222     34678899999999999999999999999999999999999887 77   99999


Q ss_pred             eCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCC--C--
Q 019059          216 YDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDEL--P--  291 (346)
Q Consensus       216 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~--~--  291 (346)
                      |+|+|. .|++|+.|+.|.+||+.. +.++..+.+|++.|.++.|+.+| ..||+|+.|++|++||+........  .  
T Consensus       585 ~Sp~Gr-~LaSg~ed~~I~iWDl~~-~~~v~~l~~Ht~ti~SlsFS~dg-~vLasgg~DnsV~lWD~~~~~~~~~~~~~~  661 (707)
T KOG0263|consen  585 FSPCGR-YLASGDEDGLIKIWDLAN-GSLVKQLKGHTGTIYSLSFSRDG-NVLASGGADNSVRLWDLTKVIELLNLGHIS  661 (707)
T ss_pred             EcCCCc-eEeecccCCcEEEEEcCC-CcchhhhhcccCceeEEEEecCC-CEEEecCCCCeEEEEEchhhcccccccccc
Confidence            999998 899999999999999998 66899999999999999999999 9999999999999999987533300  0  


Q ss_pred             -cccccCCccccccccccccccccceeeEEEeCCCCCcEEEEe
Q 019059          292 -SESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASL  333 (346)
Q Consensus       292 -~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  333 (346)
                       ..+....+......++..+.....+|..+.|...+ ..|+.|
T Consensus       662 ~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrN-l~L~~g  703 (707)
T KOG0263|consen  662 TSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRN-LLLAVG  703 (707)
T ss_pred             cccccccccCCCCcceeeeeeecCceEEEEEEeccc-eeEEec
Confidence             00011111112345566666677789999999865 355554

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=3.9e-39  Score=255.55  Aligned_cols=238  Identities=21%  Similarity=0.372  Sum_probs=211.0

Q ss_pred             cceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeE
Q 019059           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENI  145 (346)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i  145 (346)
                      ..|..++|.|+|+.|+++    +..|.+.+|+..         .......+..|+++|.++.|++++.+ ++++..+|.|
T Consensus        97 c~V~~v~WtPeGRRLltg----s~SGEFtLWNg~---------~fnFEtilQaHDs~Vr~m~ws~~g~w-miSgD~gG~i  162 (464)
T KOG0284|consen   97 CPVNVVRWTPEGRRLLTG----SQSGEFTLWNGT---------SFNFETILQAHDSPVRTMKWSHNGTW-MISGDKGGMI  162 (464)
T ss_pred             cceeeEEEcCCCceeEee----cccccEEEecCc---------eeeHHHHhhhhcccceeEEEccCCCE-EEEcCCCceE
Confidence            589999999999999996    588899999986         44555567899999999999999995 7777789999


Q ss_pred             EEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCc
Q 019059          146 FLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKH  222 (346)
Q Consensus       146 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~  222 (346)
                      ++|+..-.. .....    ..|...|++++|+|++..+++++.||+|+|||....+....+. +|   |.+++|+|... 
T Consensus       163 KyWqpnmnn-Vk~~~----ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~-GHgwdVksvdWHP~kg-  235 (464)
T KOG0284|consen  163 KYWQPNMNN-VKIIQ----AHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLR-GHGWDVKSVDWHPTKG-  235 (464)
T ss_pred             Eecccchhh-hHHhh----HhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheec-cCCCCcceeccCCccc-
Confidence            999987432 11111    1234689999999999999999999999999999988877775 66   99999999988 


Q ss_pred             EEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccc
Q 019059          223 LLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQR  302 (346)
Q Consensus       223 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  302 (346)
                      ++++|+.|..|++||.++ +.++.++..|+..|..+.|+|++ ++|+++|.|..++++|+++                  
T Consensus       236 LiasgskDnlVKlWDprS-g~cl~tlh~HKntVl~~~f~~n~-N~Llt~skD~~~kv~DiR~------------------  295 (464)
T KOG0284|consen  236 LIASGSKDNLVKLWDPRS-GSCLATLHGHKNTVLAVKFNPNG-NWLLTGSKDQSCKVFDIRT------------------  295 (464)
T ss_pred             eeEEccCCceeEeecCCC-cchhhhhhhccceEEEEEEcCCC-CeeEEccCCceEEEEehhH------------------
Confidence            999999999999999998 66899999999999999999999 9999999999999999997                  


Q ss_pred             ccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          303 ANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       303 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                       -+.++++.+|...|+++.|+|-...+|++|+.||.|..|.+.
T Consensus       296 -mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~  337 (464)
T KOG0284|consen  296 -MKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG  337 (464)
T ss_pred             -hHHHHHhhcchhhheeeccccccccceeeccCCCceEEEecc
Confidence             788999999999999999999887899999999999999864

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.4e-37  Score=247.21  Aligned_cols=286  Identities=16%  Similarity=0.249  Sum_probs=237.3

Q ss_pred             eeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEE
Q 019059           16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAI   95 (346)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~v   95 (346)
                      +..+--+.+++++..++.++    .+....+|.+..+.......++.+|..+|..+.||||.++|+++    |.+..+.+
T Consensus       224 tdEVWfl~FS~nGkyLAsaS----kD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaC----g~~e~~~l  295 (519)
T KOG0293|consen  224 TDEVWFLQFSHNGKYLASAS----KDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLAC----GFDEVLSL  295 (519)
T ss_pred             CCcEEEEEEcCCCeeEeecc----CCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEec----CchHheee
Confidence            34455577888888888764    56778889888887766778999999999999999999999996    67888999


Q ss_pred             EecCcccCCCCCccceeeeeee-ccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEE
Q 019059           96 WQIPELYGQLNSPQLERIAALD-AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGG  174 (346)
Q Consensus        96 w~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~  174 (346)
                      ||+.         ++.....+. ++...+.+++|.|||.+ +++|+.|+.+..||++.... ..-..    -....|.++
T Consensus       296 wDv~---------tgd~~~~y~~~~~~S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlDgn~~-~~W~g----vr~~~v~dl  360 (519)
T KOG0293|consen  296 WDVD---------TGDLRHLYPSGLGFSVSSCAWCPDGFR-FVTGSPDRTIIMWDLDGNIL-GNWEG----VRDPKVHDL  360 (519)
T ss_pred             ccCC---------cchhhhhcccCcCCCcceeEEccCCce-eEecCCCCcEEEecCCcchh-hcccc----cccceeEEE
Confidence            9998         666665553 23578999999999997 88889999999999985431 11100    011369999


Q ss_pred             EeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCc
Q 019059          175 AWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTH  253 (346)
Q Consensus       175 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  253 (346)
                      +..+||+++++.+.|..|++++..+......+...+ ++++..+.+++ ++++.-.+..+++||+.. ...++.+.+|..
T Consensus       361 ait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k-~~LvnL~~qei~LWDl~e-~~lv~kY~Ghkq  438 (519)
T KOG0293|consen  361 AITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGK-LALVNLQDQEIHLWDLEE-NKLVRKYFGHKQ  438 (519)
T ss_pred             EEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCc-EEEEEcccCeeEEeecch-hhHHHHhhcccc
Confidence            999999999999999999999999887776666555 99999999998 777888889999999996 668888999886


Q ss_pred             ceEE--EEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEE
Q 019059          254 WTWA--VCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFA  331 (346)
Q Consensus       254 ~v~~--v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  331 (346)
                      .-.-  -+|-.....++++||+|+.|+||+..+                   ++++.++.||...|++++|+|..+.++|
T Consensus       439 ~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~s-------------------gkll~~LsGHs~~vNcVswNP~~p~m~A  499 (519)
T KOG0293|consen  439 GHFIIRSCFGGGNDKFIASGSEDSKVYIWHRIS-------------------GKLLAVLSGHSKTVNCVSWNPADPEMFA  499 (519)
T ss_pred             cceEEEeccCCCCcceEEecCCCceEEEEEccC-------------------CceeEeecCCcceeeEEecCCCCHHHhh
Confidence            5333  345444448999999999999999999                   9999999999999999999999999999


Q ss_pred             EeecCCeEEEeeec
Q 019059          332 SLSYDGRVRNHMLE  345 (346)
Q Consensus       332 s~~~d~~v~vw~~~  345 (346)
                      ++|.||+||||.+.
T Consensus       500 SasDDgtIRIWg~~  513 (519)
T KOG0293|consen  500 SASDDGTIRIWGPS  513 (519)
T ss_pred             ccCCCCeEEEecCC
Confidence            99999999999764

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.5e-36  Score=231.98  Aligned_cols=282  Identities=17%  Similarity=0.279  Sum_probs=241.0

Q ss_pred             eeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEE
Q 019059           15 QARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAA   94 (346)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~   94 (346)
                      +...|..+.+.|++..|+.|    +.+.+|.+|++..+.++.  ..+.+|.++|..+.|.+++..++++    |.|.+|+
T Consensus        46 h~geI~~~~F~P~gs~~aSg----G~Dr~I~LWnv~gdceN~--~~lkgHsgAVM~l~~~~d~s~i~S~----gtDk~v~  115 (338)
T KOG0265|consen   46 HKGEIYTIKFHPDGSCFASG----GSDRAIVLWNVYGDCENF--WVLKGHSGAVMELHGMRDGSHILSC----GTDKTVR  115 (338)
T ss_pred             CcceEEEEEECCCCCeEeec----CCcceEEEEeccccccce--eeeccccceeEeeeeccCCCEEEEe----cCCceEE
Confidence            44566677888999999887    578999999976654433  3445999999999999999999996    7999999


Q ss_pred             EEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEE
Q 019059           95 IWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGG  174 (346)
Q Consensus        95 vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~  174 (346)
                      .||++         +++..+.++.|..-|+.+.-+.-|..++.+++.|+++++||+++......+..+.      +++++
T Consensus       116 ~wD~~---------tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~ky------qltAv  180 (338)
T KOG0265|consen  116 GWDAE---------TGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKY------QLTAV  180 (338)
T ss_pred             EEecc---------cceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccce------eEEEE
Confidence            99999         8999999999999999999777788655566889999999999766554444333      89999


Q ss_pred             EeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCC---cceeee
Q 019059          175 AWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK---APIQEL  248 (346)
Q Consensus       175 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~  248 (346)
                      .|..++..+++|+-|+.|++||++.......+. +|   |+.+..+|+|. .+.+-+-|.++++||+|...   +++..+
T Consensus       181 ~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~ls-Gh~DtIt~lsls~~gs-~llsnsMd~tvrvwd~rp~~p~~R~v~if  258 (338)
T KOG0265|consen  181 GFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLS-GHADTITGLSLSRYGS-FLLSNSMDNTVRVWDVRPFAPSQRCVKIF  258 (338)
T ss_pred             EecccccceeeccccCceeeeccccCcceEEee-cccCceeeEEeccCCC-ccccccccceEEEEEecccCCCCceEEEe
Confidence            999999999999999999999999999888887 77   99999999998 88899999999999998532   246667


Q ss_pred             cCCCc----ceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCC
Q 019059          249 PGHTH----WTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS  324 (346)
Q Consensus       249 ~~~~~----~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  324 (346)
                      .+|..    ....++|+|++ ..+.+|+.|..+++||...                   ...+..+.+|.+.|.+++|+|
T Consensus       259 ~g~~hnfeknlL~cswsp~~-~~i~ags~dr~vyvwd~~~-------------------r~~lyklpGh~gsvn~~~Fhp  318 (338)
T KOG0265|consen  259 QGHIHNFEKNLLKCSWSPNG-TKITAGSADRFVYVWDTTS-------------------RRILYKLPGHYGSVNEVDFHP  318 (338)
T ss_pred             ecchhhhhhhcceeeccCCC-CccccccccceEEEeeccc-------------------ccEEEEcCCcceeEEEeeecC
Confidence            66543    34577899999 9999999999999999998                   789999999999999999999


Q ss_pred             CCCcEEEEeecCCeEEEeee
Q 019059          325 REPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       325 ~~~~~l~s~~~d~~v~vw~~  344 (346)
                      ..+ +|.+++.|.+|++=.+
T Consensus       319 ~e~-iils~~sdk~i~lgei  337 (338)
T KOG0265|consen  319 TEP-IILSCSSDKTIYLGEI  337 (338)
T ss_pred             CCc-EEEEeccCceeEeecc
Confidence            998 9999999999987443

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2.8e-36  Score=243.44  Aligned_cols=279  Identities=19%  Similarity=0.336  Sum_probs=243.1

Q ss_pred             eeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEE
Q 019059           16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAI   95 (346)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~v   95 (346)
                      .+-++.+.++.++.-+++|.    .++.+++|+....    ....+..|.++|.++.|+..|.+|+++    +.|+++.+
T Consensus       235 nkdVT~L~Wn~~G~~LatG~----~~G~~riw~~~G~----l~~tl~~HkgPI~slKWnk~G~yilS~----~vD~ttil  302 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGTLLATGS----EDGEARIWNKDGN----LISTLGQHKGPIFSLKWNKKGTYILSG----GVDGTTIL  302 (524)
T ss_pred             cCCcceEEecCCCCeEEEee----cCcEEEEEecCch----hhhhhhccCCceEEEEEcCCCCEEEec----cCCccEEE
Confidence            35678888999999999885    6789999977664    346777899999999999999999995    89999999


Q ss_pred             EecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEE
Q 019059           96 WQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGA  175 (346)
Q Consensus        96 w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~  175 (346)
                      ||.-         .+...+.+..|..+-..+.|-.+..  +++++.|+.|+|+.+....+...+     .+|..+|.++.
T Consensus       303 wd~~---------~g~~~q~f~~~s~~~lDVdW~~~~~--F~ts~td~~i~V~kv~~~~P~~t~-----~GH~g~V~alk  366 (524)
T KOG0273|consen  303 WDAH---------TGTVKQQFEFHSAPALDVDWQSNDE--FATSSTDGCIHVCKVGEDRPVKTF-----IGHHGEVNALK  366 (524)
T ss_pred             Eecc---------CceEEEeeeeccCCccceEEecCce--EeecCCCceEEEEEecCCCcceee-----ecccCceEEEE
Confidence            9987         6778888888988888999988877  788888999999999865544333     34778999999


Q ss_pred             eCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCC--------cEEEEecCCCeEEEEEcccCCcc
Q 019059          176 WDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKK--------HLLVTAADESGIHLWDLRMLKAP  244 (346)
Q Consensus       176 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~--------~~l~~~~~dg~i~i~d~~~~~~~  244 (346)
                      |+|.+..|++++.|++++||.+........+. +|   |..+.|+|.++        ..+++++.|++|++||+.. ..+
T Consensus       367 ~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~-~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~-gv~  444 (524)
T KOG0273|consen  367 WNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ-AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES-GVP  444 (524)
T ss_pred             ECCCCceEEEecCCCeeEeeecCCCcchhhhh-hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC-Cce
Confidence            99999999999999999999999888888777 55   99999998764        3688999999999999997 679


Q ss_pred             eeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCC
Q 019059          245 IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS  324 (346)
Q Consensus       245 ~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  324 (346)
                      +..|..|+.+|++++|+|+| .++|+|+.||.|.||++++                   ++.++.+.+.. .|..++|+.
T Consensus       445 i~~f~kH~~pVysvafS~~g-~ylAsGs~dg~V~iws~~~-------------------~~l~~s~~~~~-~Ifel~Wn~  503 (524)
T KOG0273|consen  445 IHTLMKHQEPVYSVAFSPNG-RYLASGSLDGCVHIWSTKT-------------------GKLVKSYQGTG-GIFELCWNA  503 (524)
T ss_pred             eEeeccCCCceEEEEecCCC-cEEEecCCCCeeEeccccc-------------------hheeEeecCCC-eEEEEEEcC
Confidence            99999999999999999999 9999999999999999999                   88888887654 499999999


Q ss_pred             CCCcEEEEeecCCeEEEeeecC
Q 019059          325 REPWIFASLSYDGRVRNHMLEK  346 (346)
Q Consensus       325 ~~~~~l~s~~~d~~v~vw~~~~  346 (346)
                      +|. .|..+-.|+.+++-|+.+
T Consensus       504 ~G~-kl~~~~sd~~vcvldlr~  524 (524)
T KOG0273|consen  504 AGD-KLGACASDGSVCVLDLRK  524 (524)
T ss_pred             CCC-EEEEEecCCCceEEEecC
Confidence            997 788888899999998853

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.8e-37  Score=239.92  Aligned_cols=263  Identities=18%  Similarity=0.338  Sum_probs=231.0

Q ss_pred             CCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeec
Q 019059           39 KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA  118 (346)
Q Consensus        39 ~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~  118 (346)
                      .++..+++|++....  + ...+.+|.+.|.+++|+..|+.++++    +.|-.+++||.+.        ..++++.+.+
T Consensus       127 s~d~tikv~D~~tg~--~-e~~LrGHt~sv~di~~~a~Gk~l~tc----SsDl~~~LWd~~~--------~~~c~ks~~g  191 (406)
T KOG0295|consen  127 SEDATIKVFDTETGE--L-ERSLRGHTDSVFDISFDASGKYLATC----SSDLSAKLWDFDT--------FFRCIKSLIG  191 (406)
T ss_pred             cCCceEEEEEccchh--h-hhhhhccccceeEEEEecCccEEEec----CCccchhheeHHH--------HHHHHHHhcC
Confidence            467889999877643  3 67889999999999999999888885    6887899999983        3678888889


Q ss_pred             cCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEcc
Q 019059          119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLR  198 (346)
Q Consensus       119 ~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~  198 (346)
                      |+..|.+++|-|.|.+ +++++.|.+|+.|++.++.....+     .+|...+..++.+.||..+++++.|.+|++|-+.
T Consensus       192 h~h~vS~V~f~P~gd~-ilS~srD~tik~We~~tg~cv~t~-----~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~  265 (406)
T KOG0295|consen  192 HEHGVSSVFFLPLGDH-ILSCSRDNTIKAWECDTGYCVKTF-----PGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVA  265 (406)
T ss_pred             cccceeeEEEEecCCe-eeecccccceeEEecccceeEEec-----cCchHhEEEEEecCCeeEEEecCCCceEEEEEec
Confidence            9999999999999985 777789999999999987654443     4577789999999999999999999999999999


Q ss_pred             CCCccceee-ccc-eeEEEeCCCC--------------CcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCC
Q 019059          199 SMGKTNSIE-HAH-VRNVDYDTKK--------------KHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNP  262 (346)
Q Consensus       199 ~~~~~~~~~-~~~-v~~~~~~~~~--------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~  262 (346)
                      ++++...+. .+| |.+++|.|..              ..++.+++.|++|++||+.. ..++.++.+|.++|..++|+|
T Consensus       266 t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t-g~cL~tL~ghdnwVr~~af~p  344 (406)
T KOG0295|consen  266 TKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST-GMCLFTLVGHDNWVRGVAFSP  344 (406)
T ss_pred             cchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC-CeEEEEEecccceeeeeEEcC
Confidence            998777666 233 9999997741              13789999999999999998 668999999999999999999


Q ss_pred             CCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEe
Q 019059          263 EYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNH  342 (346)
Q Consensus       263 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw  342 (346)
                      .| +||+++.+|+++++||++.                   .++++++..|..-|++++|+.+.+ ++++|+-|..+++|
T Consensus       345 ~G-kyi~ScaDDktlrvwdl~~-------------------~~cmk~~~ah~hfvt~lDfh~~~p-~VvTGsVdqt~Kvw  403 (406)
T KOG0295|consen  345 GG-KYILSCADDKTLRVWDLKN-------------------LQCMKTLEAHEHFVTSLDFHKTAP-YVVTGSVDQTVKVW  403 (406)
T ss_pred             CC-eEEEEEecCCcEEEEEecc-------------------ceeeeccCCCcceeEEEecCCCCc-eEEeccccceeeee
Confidence            99 9999999999999999998                   899999999999999999999888 99999999999999


Q ss_pred             ee
Q 019059          343 ML  344 (346)
Q Consensus       343 ~~  344 (346)
                      .-
T Consensus       404 Ec  405 (406)
T KOG0295|consen  404 EC  405 (406)
T ss_pred             ec
Confidence            63

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=4.9e-36  Score=223.49  Aligned_cols=274  Identities=15%  Similarity=0.264  Sum_probs=227.3

Q ss_pred             CcceeeecccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEE
Q 019059            4 GSSGIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFST   83 (346)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~   83 (346)
                      -++.|...+..+..-+..+...++...++++     ....|+++++...+.. ....+.+|...|.++.|.-+|+.+.+ 
T Consensus        28 ~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa-----~~qhvRlyD~~S~np~-Pv~t~e~h~kNVtaVgF~~dgrWMyT-  100 (311)
T KOG0315|consen   28 LTGICSRTIQHPDSQVNRLEITPDKKDLAAA-----GNQHVRLYDLNSNNPN-PVATFEGHTKNVTAVGFQCDGRWMYT-  100 (311)
T ss_pred             hcCeEEEEEecCccceeeEEEcCCcchhhhc-----cCCeeEEEEccCCCCC-ceeEEeccCCceEEEEEeecCeEEEe-
Confidence            3456777777777777778888888888876     3568999999987654 44788899999999999999999888 


Q ss_pred             EeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecc
Q 019059           84 VFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQ  163 (346)
Q Consensus        84 ~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~  163 (346)
                         ||+||+++|||++         ...+.+.+ .|.++|+++..+|+... ++++..+|.|++||+.......++.+..
T Consensus       101 ---gseDgt~kIWdlR---------~~~~qR~~-~~~spVn~vvlhpnQte-Lis~dqsg~irvWDl~~~~c~~~liPe~  166 (311)
T KOG0315|consen  101 ---GSEDGTVKIWDLR---------SLSCQRNY-QHNSPVNTVVLHPNQTE-LISGDQSGNIRVWDLGENSCTHELIPED  166 (311)
T ss_pred             ---cCCCceEEEEecc---------Ccccchhc-cCCCCcceEEecCCcce-EEeecCCCcEEEEEccCCccccccCCCC
Confidence               5899999999998         44444444 67899999999999885 8888889999999999776555555433


Q ss_pred             cCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceee-----ccc---eeEEEeCCCCCcEEEEecCCCeEEE
Q 019059          164 SSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE-----HAH---VRNVDYDTKKKHLLVTAADESGIHL  235 (346)
Q Consensus       164 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-----~~~---v~~~~~~~~~~~~l~~~~~dg~i~i  235 (346)
                          ...+.++...|+|.+++++...|..++|++-+.+....+.     ..|   +..+.++|+++ +|++++.|.+++|
T Consensus       167 ----~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k-~lat~ssdktv~i  241 (311)
T KOG0315|consen  167 ----DTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVK-YLATCSSDKTVKI  241 (311)
T ss_pred             ----CcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCc-EEEeecCCceEEE
Confidence                2489999999999999999999999999998765332222     133   99999999998 8999999999999


Q ss_pred             EEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccc
Q 019059          236 WDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYED  315 (346)
Q Consensus       236 ~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (346)
                      |+....-+....+++|+.++..++||.+| .||++|+.|+.+++||+..                   ++.+....+|-.
T Consensus       242 wn~~~~~kle~~l~gh~rWvWdc~FS~dg-~YlvTassd~~~rlW~~~~-------------------~k~v~qy~gh~K  301 (311)
T KOG0315|consen  242 WNTDDFFKLELVLTGHQRWVWDCAFSADG-EYLVTASSDHTARLWDLSA-------------------GKEVRQYQGHHK  301 (311)
T ss_pred             EecCCceeeEEEeecCCceEEeeeeccCc-cEEEecCCCCceeeccccc-------------------CceeeecCCccc
Confidence            99987534566788999999999999999 9999999999999999998                   899999999988


Q ss_pred             eeeEEEeC
Q 019059          316 SVYGLAWS  323 (346)
Q Consensus       316 ~v~~~~~~  323 (346)
                      ...+++..
T Consensus       302 ~~vc~~ln  309 (311)
T KOG0315|consen  302 AAVCVALN  309 (311)
T ss_pred             ccEEEEee
Confidence            77777653

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=4.3e-37  Score=248.95  Aligned_cols=290  Identities=15%  Similarity=0.208  Sum_probs=243.4

Q ss_pred             eecccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecC
Q 019059            9 GYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTG   88 (346)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~   88 (346)
                      ++.+..++..++++.+-+-...|+++   .+.++.|++|++.++..  ..+++.+|..+|.+++|++++..++++    +
T Consensus       207 ~~~~~gH~kgvsai~~fp~~~hLlLS---~gmD~~vklW~vy~~~~--~lrtf~gH~k~Vrd~~~s~~g~~fLS~----s  277 (503)
T KOG0282|consen  207 SHNLSGHTKGVSAIQWFPKKGHLLLS---GGMDGLVKLWNVYDDRR--CLRTFKGHRKPVRDASFNNCGTSFLSA----S  277 (503)
T ss_pred             eeeccCCccccchhhhccceeeEEEe---cCCCceEEEEEEecCcc--eehhhhcchhhhhhhhccccCCeeeee----e
Confidence            34445556677777777744444443   25789999999999644  447889999999999999999999996    7


Q ss_pred             CcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCc
Q 019059           89 ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGML  168 (346)
Q Consensus        89 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  168 (346)
                      -|+.|++||++         +++++..+. ....++|+.|.|++.+++++|+.|+.|+.||+++++...++     ..|.
T Consensus       278 fD~~lKlwDtE---------TG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeY-----d~hL  342 (503)
T KOG0282|consen  278 FDRFLKLWDTE---------TGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEY-----DRHL  342 (503)
T ss_pred             cceeeeeeccc---------cceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHH-----Hhhh
Confidence            99999999999         888888883 35678999999999888999999999999999987744333     2366


Q ss_pred             eeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeecc--c-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCC--c
Q 019059          169 HYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA--H-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK--A  243 (346)
Q Consensus       169 ~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~  243 (346)
                      ..+..+.|-++++.+++++.|++++||+.+.+-.+..+...  | ..++..+|+++ .+++-+.|..|.+|.+...-  .
T Consensus       343 g~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~-~~~aQs~dN~i~ifs~~~~~r~n  421 (503)
T KOG0282|consen  343 GAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGK-WFAAQSMDNYIAIFSTVPPFRLN  421 (503)
T ss_pred             hheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCC-eehhhccCceEEEEecccccccC
Confidence            78999999999999999999999999999988776655433  3 88999999998 89999999999999876421  1


Q ss_pred             ceeeecCCC--cceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEE
Q 019059          244 PIQELPGHT--HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLA  321 (346)
Q Consensus       244 ~~~~~~~~~--~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  321 (346)
                      ..+.+++|.  +.-..+.||||| .+|++|+.||.+.+||.++                   .+++..++.|.+++..+.
T Consensus       422 kkK~feGh~vaGys~~v~fSpDG-~~l~SGdsdG~v~~wdwkt-------------------~kl~~~lkah~~~ci~v~  481 (503)
T KOG0282|consen  422 KKKRFEGHSVAGYSCQVDFSPDG-RTLCSGDSDGKVNFWDWKT-------------------TKLVSKLKAHDQPCIGVD  481 (503)
T ss_pred             HhhhhcceeccCceeeEEEcCCC-CeEEeecCCccEEEeechh-------------------hhhhhccccCCcceEEEE
Confidence            345577776  445678899999 9999999999999999999                   899999999999999999


Q ss_pred             eCCCCCcEEEEeecCCeEEEee
Q 019059          322 WSSREPWIFASLSYDGRVRNHM  343 (346)
Q Consensus       322 ~~~~~~~~l~s~~~d~~v~vw~  343 (346)
                      |+|.....+|+++.||.|++|+
T Consensus       482 wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  482 WHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             ecCCCcceeEecccCceeEecC
Confidence            9999888999999999999996

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.7e-35  Score=251.64  Aligned_cols=311  Identities=14%  Similarity=0.138  Sum_probs=247.8

Q ss_pred             ceeeecccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEe
Q 019059            6 SGIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVF   85 (346)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   85 (346)
                      ..++|.+......|..+.++..+..+++|+.   .-+++.+|+...+..   .....+|...+++++++|||+.+++   
T Consensus       297 f~lih~LSis~~~I~t~~~N~tGDWiA~g~~---klgQLlVweWqsEsY---VlKQQgH~~~i~~l~YSpDgq~iaT---  367 (893)
T KOG0291|consen  297 FNLIHSLSISDQKILTVSFNSTGDWIAFGCS---KLGQLLVWEWQSESY---VLKQQGHSDRITSLAYSPDGQLIAT---  367 (893)
T ss_pred             ceEEEEeecccceeeEEEecccCCEEEEcCC---ccceEEEEEeeccce---eeeccccccceeeEEECCCCcEEEe---
Confidence            4567777777778888889888999999863   467999999888643   2344589999999999999999888   


Q ss_pred             ecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccC
Q 019059           86 STGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSS  165 (346)
Q Consensus        86 ~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~  165 (346)
                       |++|+.|+|||..         .+-+..++..|++.|+.+.|+..++ .+++++-||+|+.||+........+..+.  
T Consensus       368 -G~eDgKVKvWn~~---------SgfC~vTFteHts~Vt~v~f~~~g~-~llssSLDGtVRAwDlkRYrNfRTft~P~--  434 (893)
T KOG0291|consen  368 -GAEDGKVKVWNTQ---------SGFCFVTFTEHTSGVTAVQFTARGN-VLLSSSLDGTVRAWDLKRYRNFRTFTSPE--  434 (893)
T ss_pred             -ccCCCcEEEEecc---------CceEEEEeccCCCceEEEEEEecCC-EEEEeecCCeEEeeeecccceeeeecCCC--
Confidence             4799999999988         7889999999999999999999998 47777889999999998766554444332  


Q ss_pred             CCceeeEEEEeCCCCCcEEEEecCC-eEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccC
Q 019059          166 GMLHYLSGGAWDPHDVNAVAATCES-SVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRML  241 (346)
Q Consensus       166 ~~~~~v~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  241 (346)
                        ..+..+++..|.|..+.+|+.|. .|++|++++|+.+-.+. +|   |.+++|+|.+. .|++++.|.+|++||+-..
T Consensus       435 --p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLs-GHEgPVs~l~f~~~~~-~LaS~SWDkTVRiW~if~s  510 (893)
T KOG0291|consen  435 --PIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILS-GHEGPVSGLSFSPDGS-LLASGSWDKTVRIWDIFSS  510 (893)
T ss_pred             --ceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhc-CCCCcceeeEEccccC-eEEeccccceEEEEEeecc
Confidence              33678999999999888888764 79999999999888777 77   99999999998 9999999999999999875


Q ss_pred             CcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCc-cccccccccccccccceeeEE
Q 019059          242 KAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESP-NQRANSLLNSYSDYEDSVYGL  320 (346)
Q Consensus       242 ~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~  320 (346)
                      ...+.++. +...+..++|.|+| ..||+++.||.|.+||.................+ .+................+.+
T Consensus       511 ~~~vEtl~-i~sdvl~vsfrPdG-~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti  588 (893)
T KOG0291|consen  511 SGTVETLE-IRSDVLAVSFRPDG-KELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTI  588 (893)
T ss_pred             CceeeeEe-eccceeEEEEcCCC-CeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEE
Confidence            55666665 67889999999999 9999999999999999987322211111100000 011112222222344678999


Q ss_pred             EeCCCCCcEEEEeecCCeEEEeeec
Q 019059          321 AWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       321 ~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      ++++||. .+++||..+.|++|++.
T Consensus       589 ~ySaDG~-~IlAgG~sn~iCiY~v~  612 (893)
T KOG0291|consen  589 CYSADGK-CILAGGESNSICIYDVP  612 (893)
T ss_pred             EEcCCCC-EEEecCCcccEEEEECc
Confidence            9999998 88999999999999974

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.4e-37  Score=240.58  Aligned_cols=246  Identities=19%  Similarity=0.256  Sum_probs=218.1

Q ss_pred             eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEE
Q 019059           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV  138 (346)
Q Consensus        59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  138 (346)
                      ..+.+|..+|+.+-|+|+...++++    +.|++|++||..         +++....+++|...+..++|+..|++ +++
T Consensus       102 ~~l~g~r~~vt~v~~hp~~~~v~~a----s~d~tikv~D~~---------tg~~e~~LrGHt~sv~di~~~a~Gk~-l~t  167 (406)
T KOG0295|consen  102 QKLAGHRSSVTRVIFHPSEALVVSA----SEDATIKVFDTE---------TGELERSLRGHTDSVFDISFDASGKY-LAT  167 (406)
T ss_pred             hhhhccccceeeeeeccCceEEEEe----cCCceEEEEEcc---------chhhhhhhhccccceeEEEEecCccE-EEe
Confidence            5567899999999999977666654    699999999998         78889999999999999999999984 666


Q ss_pred             EecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEE
Q 019059          139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVD  215 (346)
Q Consensus       139 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~  215 (346)
                      ++.|-.+++||.++....    .....+|...|.++.|-|.|.++++++.|.+|+.|++.++.++.++. +|   +..++
T Consensus       168 cSsDl~~~LWd~~~~~~c----~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~-~h~ewvr~v~  242 (406)
T KOG0295|consen  168 CSSDLSAKLWDFDTFFRC----IKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFP-GHSEWVRMVR  242 (406)
T ss_pred             cCCccchhheeHHHHHHH----HHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEecc-CchHhEEEEE
Confidence            677888999999853221    12234577799999999999999999999999999999999999998 55   99999


Q ss_pred             eCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCC--------------CcEEEEecCCCeEEEEe
Q 019059          216 YDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEY--------------DGFILSAGTDSTVNLWL  281 (346)
Q Consensus       216 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~--------------~~~l~s~~~d~~i~iwd  281 (346)
                      .+.||. ++++++.|.++++|-+.+ +++...++.|+.+|.+++|.|..              ..++.+++.|++|++||
T Consensus       243 v~~DGt-i~As~s~dqtl~vW~~~t-~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wd  320 (406)
T KOG0295|consen  243 VNQDGT-IIASCSNDQTLRVWVVAT-KQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWD  320 (406)
T ss_pred             ecCCee-EEEecCCCceEEEEEecc-chhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEe
Confidence            999998 999999999999999987 66788899999999999998732              25899999999999999


Q ss_pred             cCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          282 VSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      +.+                   +.++.++.+|..+|.+++|+|.|+ +|+++.+|+++++||+.
T Consensus       321 v~t-------------------g~cL~tL~ghdnwVr~~af~p~Gk-yi~ScaDDktlrvwdl~  364 (406)
T KOG0295|consen  321 VST-------------------GMCLFTLVGHDNWVRGVAFSPGGK-YILSCADDKTLRVWDLK  364 (406)
T ss_pred             ccC-------------------CeEEEEEecccceeeeeEEcCCCe-EEEEEecCCcEEEEEec
Confidence            999                   999999999999999999999997 99999999999999985

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=3.2e-36  Score=243.14  Aligned_cols=281  Identities=17%  Similarity=0.250  Sum_probs=227.3

Q ss_pred             eEeeeccCCCCcc-eEEEeecccCCCCeEEEEEecCCCCeEEE----e-------eeeccccceEEeeecCCCCceEEEE
Q 019059           17 RCISDVKADTDHT-SFLTGTLSLKEENEVHLLRLSSGGTELIC----E-------GLFSHPNEIWDLSSCPFDQRIFSTV   84 (346)
Q Consensus        17 ~~~~~~~~~~~~~-~~~~g~~~~~~~~~i~~~~~~~~~~~~~~----~-------~~~~h~~~v~~~~~~~~~~~l~~~~   84 (346)
                      ..+....++|... -++.|.    .+-..++|++.........    +       .-......|++++|+.+|..|+++ 
T Consensus       179 ~~V~~~~WnP~~~~llasg~----~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG-  253 (524)
T KOG0273|consen  179 SEVFICAWNPLRDGLLASGS----GDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATG-  253 (524)
T ss_pred             CceEEEecCchhhhhhhccC----CccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEe-
Confidence            3455556666665 444443    3344567776642111111    0       111123689999999999988884 


Q ss_pred             eecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeeccc
Q 019059           85 FSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQS  164 (346)
Q Consensus        85 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~  164 (346)
                         ..||.+++|+..          +..+.++..|+++|.++.|+..|++ +++++-|+++.+||..++.....+..   
T Consensus       254 ---~~~G~~riw~~~----------G~l~~tl~~HkgPI~slKWnk~G~y-ilS~~vD~ttilwd~~~g~~~q~f~~---  316 (524)
T KOG0273|consen  254 ---SEDGEARIWNKD----------GNLISTLGQHKGPIFSLKWNKKGTY-ILSGGVDGTTILWDAHTGTVKQQFEF---  316 (524)
T ss_pred             ---ecCcEEEEEecC----------chhhhhhhccCCceEEEEEcCCCCE-EEeccCCccEEEEeccCceEEEeeee---
Confidence               799999999985          6788899999999999999999997 77778899999999987664444333   


Q ss_pred             CCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccC
Q 019059          165 SGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRML  241 (346)
Q Consensus       165 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  241 (346)
                        |..+...+.|-. ...+++.+.|+.|+++.+....++.++. +|   |.++.|+|.+. +|++++.|++++||.... 
T Consensus       317 --~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~-GH~g~V~alk~n~tg~-LLaS~SdD~TlkiWs~~~-  390 (524)
T KOG0273|consen  317 --HSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFI-GHHGEVNALKWNPTGS-LLASCSDDGTLKIWSMGQ-  390 (524)
T ss_pred             --ccCCccceEEec-CceEeecCCCceEEEEEecCCCcceeee-cccCceEEEEECCCCc-eEEEecCCCeeEeeecCC-
Confidence              333446678874 4558888899999999999999999998 46   99999999998 999999999999999887 


Q ss_pred             CcceeeecCCCcceEEEEeCCCCC--------cEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccc
Q 019059          242 KAPIQELPGHTHWTWAVCCNPEYD--------GFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDY  313 (346)
Q Consensus       242 ~~~~~~~~~~~~~v~~v~~~~~~~--------~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (346)
                      ....+.+..|...|..+.|+|.|+        ..+++++.|++|++||+..                   +.+++++..|
T Consensus       391 ~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~-------------------gv~i~~f~kH  451 (524)
T KOG0273|consen  391 SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES-------------------GVPIHTLMKH  451 (524)
T ss_pred             CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC-------------------CceeEeeccC
Confidence            557889999999999999999773        5789999999999999999                   9999999999


Q ss_pred             cceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          314 EDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       314 ~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      +.+|.+++|+|+++ ++|+|+.||.|.+|++.
T Consensus       452 ~~pVysvafS~~g~-ylAsGs~dg~V~iws~~  482 (524)
T KOG0273|consen  452 QEPVYSVAFSPNGR-YLASGSLDGCVHIWSTK  482 (524)
T ss_pred             CCceEEEEecCCCc-EEEecCCCCeeEecccc
Confidence            99999999999997 99999999999999864

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.1e-36  Score=252.24  Aligned_cols=246  Identities=16%  Similarity=0.255  Sum_probs=219.9

Q ss_pred             eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEE
Q 019059           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV  138 (346)
Q Consensus        59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  138 (346)
                      +.+..+...|.++.++|..+.++++.    -.|.|.|||.+         +...++.+....-+|++..|-+..++ +++
T Consensus         7 rk~~~rSdRVKsVd~HPtePw~la~L----ynG~V~IWnye---------tqtmVksfeV~~~PvRa~kfiaRknW-iv~   72 (794)
T KOG0276|consen    7 RKFQSRSDRVKSVDFHPTEPWILAAL----YNGDVQIWNYE---------TQTMVKSFEVSEVPVRAAKFIARKNW-IVT   72 (794)
T ss_pred             hHhhccCCceeeeecCCCCceEEEee----ecCeeEEEecc---------cceeeeeeeecccchhhheeeeccce-EEE
Confidence            34455889999999999999999975    77899999998         77888899888999999999988886 888


Q ss_pred             EecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEE
Q 019059          139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVD  215 (346)
Q Consensus       139 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~  215 (346)
                      +++|..|++|+.++.++...+.     .|...+.+++.+|..+++++++.|-.|++||-+..-.......+|   |.+++
T Consensus        73 GsDD~~IrVfnynt~ekV~~Fe-----AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~  147 (794)
T KOG0276|consen   73 GSDDMQIRVFNYNTGEKVKTFE-----AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVA  147 (794)
T ss_pred             ecCCceEEEEecccceeeEEee-----ccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEE
Confidence            8999999999999887655443     477899999999999999999999999999998765444444477   99999


Q ss_pred             eCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCC-CcEEEEecCCCeEEEEecCCCCCCCCCccc
Q 019059          216 YDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEY-DGFILSAGTDSTVNLWLVSTSNHDELPSES  294 (346)
Q Consensus       216 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  294 (346)
                      |+|.+++.+++++-|++|++|.+.+ ..+..++++|...|+|+.+-+.| ..+|++|++|.+|+|||.++          
T Consensus       148 fnPkD~ntFaS~sLDrTVKVWslgs-~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt----------  216 (794)
T KOG0276|consen  148 FNPKDPNTFASASLDRTVKVWSLGS-PHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT----------  216 (794)
T ss_pred             ecCCCccceeeeeccccEEEEEcCC-CCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecch----------
Confidence            9999999999999999999999998 55899999999999999998765 36999999999999999999          


Q ss_pred             ccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059          295 LVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~  344 (346)
                               ..+++++.||...|..+.|+|.-+ ++++||+||+||||+-
T Consensus       217 ---------k~CV~TLeGHt~Nvs~v~fhp~lp-iiisgsEDGTvriWhs  256 (794)
T KOG0276|consen  217 ---------KSCVQTLEGHTNNVSFVFFHPELP-IIISGSEDGTVRIWNS  256 (794)
T ss_pred             ---------HHHHHHhhcccccceEEEecCCCc-EEEEecCCccEEEecC
Confidence                     899999999999999999999998 9999999999999974

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=2.1e-35  Score=232.46  Aligned_cols=284  Identities=19%  Similarity=0.321  Sum_probs=226.6

Q ss_pred             EeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCc---eEEEEeecCCcceEE
Q 019059           18 CISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQR---IFSTVFSTGESYGAA   94 (346)
Q Consensus        18 ~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~---l~~~~~~~~~d~~i~   94 (346)
                      |++++...  ...++.|    ..++.+++|+....    ....+.+|.++|.+++|.-.+..   ++++    +.|.+++
T Consensus       107 WVSsv~~~--~~~Iltg----sYDg~~riWd~~Gk----~~~~~~Ght~~ik~v~~v~~n~~~~~fvsa----s~Dqtl~  172 (423)
T KOG0313|consen  107 WVSSVKGA--SKWILTG----SYDGTSRIWDLKGK----SIKTIVGHTGPIKSVAWVIKNSSSCLFVSA----SMDQTLR  172 (423)
T ss_pred             hhhhhccc--CceEEEe----ecCCeeEEEecCCc----eEEEEecCCcceeeeEEEecCCccceEEEe----cCCceEE
Confidence            44444433  3344444    46788999977664    45677899999999998543333   5554    8999999


Q ss_pred             EEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCC-------------------
Q 019059           95 IWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNK-------------------  155 (346)
Q Consensus        95 vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~-------------------  155 (346)
                      +|.++....     ..+.+....+|...|-+++..++|.. +++++.|..|.+|+......                   
T Consensus       173 Lw~~~~~~~-----~~~~~~~~~GHk~~V~sVsv~~sgtr-~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~  246 (423)
T KOG0313|consen  173 LWKWNVGEN-----KVKALKVCRGHKRSVDSVSVDSSGTR-FCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKE  246 (423)
T ss_pred             EEEecCchh-----hhhHHhHhcccccceeEEEecCCCCe-EEeecccceeeecccCCCccccccccchhhhhhhhhhhc
Confidence            999873211     23344455699999999999999995 78889999999999332110                   


Q ss_pred             -CceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeE
Q 019059          156 -NAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGI  233 (346)
Q Consensus       156 -~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i  233 (346)
                       ..+.......+|..+|.++.|++ ...+++++.|.+|+.||+.++.....+.... +++++.+|... +|++|+.|..+
T Consensus       247 ~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~-Ll~~gssdr~i  324 (423)
T KOG0313|consen  247 GGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSK-LLASGSSDRHI  324 (423)
T ss_pred             ccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccc-eeeecCCCCce
Confidence             00011112468999999999997 7789999999999999999999998888666 99999999887 99999999999


Q ss_pred             EEEEcccCCc--ceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccc
Q 019059          234 HLWDLRMLKA--PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYS  311 (346)
Q Consensus       234 ~i~d~~~~~~--~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (346)
                      ++||.|+...  +.++|.+|++.|.++.|+|..+..|++++.|+++++||+|+                  ...++..+.
T Consensus       325 rl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS------------------~k~plydI~  386 (423)
T KOG0313|consen  325 RLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRS------------------TKAPLYDIA  386 (423)
T ss_pred             eecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEecc------------------CCCcceeec
Confidence            9999997543  55778899999999999999988999999999999999998                  244899999


Q ss_pred             cccceeeEEEeCCCCCcEEEEeecCCeEEEee
Q 019059          312 DYEDSVYGLAWSSREPWIFASLSYDGRVRNHM  343 (346)
Q Consensus       312 ~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~  343 (346)
                      +|...|.++.|+..+  ++++||.|.+|+++.
T Consensus       387 ~h~DKvl~vdW~~~~--~IvSGGaD~~l~i~~  416 (423)
T KOG0313|consen  387 GHNDKVLSVDWNEGG--LIVSGGADNKLRIFK  416 (423)
T ss_pred             cCCceEEEEeccCCc--eEEeccCcceEEEec
Confidence            999999999999743  799999999999985

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=3e-34  Score=234.76  Aligned_cols=291  Identities=17%  Similarity=0.224  Sum_probs=227.8

Q ss_pred             cceeeEeeeccCCCCc-ceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcc
Q 019059           13 KYQARCISDVKADTDH-TSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESY   91 (346)
Q Consensus        13 ~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~   91 (346)
                      ..+.|.+.++.+.|.. -|++.|    ++++.+.+++=++   ......+..|..-|+|++|+|||.+++++    |.|+
T Consensus       144 ~GhSr~ins~~~KpsRPfRi~T~----sdDn~v~ffeGPP---FKFk~s~r~HskFV~~VRysPDG~~Fat~----gsDg  212 (603)
T KOG0318|consen  144 TGHSRRINSVDFKPSRPFRIATG----SDDNTVAFFEGPP---FKFKSSFREHSKFVNCVRYSPDGSRFATA----GSDG  212 (603)
T ss_pred             eccceeEeeeeccCCCceEEEec----cCCCeEEEeeCCC---eeeeecccccccceeeEEECCCCCeEEEe----cCCc
Confidence            3456777777766644 455554    4667666664333   33446677899999999999999998887    7999


Q ss_pred             eEEEEecCcccCCCCCccceeeeeee---ccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeee-------
Q 019059           92 GAAIWQIPELYGQLNSPQLERIAALD---AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQS-------  161 (346)
Q Consensus        92 ~i~vw~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~-------  161 (346)
                      ++.+||=.         +++.+..+.   +|++.|++++|+||+++ +++++.|.+++|||+.+.....+...       
T Consensus       213 ki~iyDGk---------tge~vg~l~~~~aHkGsIfalsWsPDs~~-~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dq  282 (603)
T KOG0318|consen  213 KIYIYDGK---------TGEKVGELEDSDAHKGSIFALSWSPDSTQ-FLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQ  282 (603)
T ss_pred             cEEEEcCC---------CccEEEEecCCCCccccEEEEEECCCCce-EEEecCCceEEEEEeeccceEEEeecCCchhce
Confidence            99999976         677777776   89999999999999997 77777899999999987643221110       


Q ss_pred             -------------------------------cccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccce-----
Q 019059          162 -------------------------------KQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNS-----  205 (346)
Q Consensus       162 -------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-----  205 (346)
                                                     ....+|...|+++..+|++.+|++++.||.|.-||..++..-+.     
T Consensus       283 qvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h  362 (603)
T KOG0318|consen  283 QVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGH  362 (603)
T ss_pred             EEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccc
Confidence                                           12368899999999999999999999999999998765432100     


Q ss_pred             --------------------------e-------------e------------c--------------------------
Q 019059          206 --------------------------I-------------E------------H--------------------------  208 (346)
Q Consensus       206 --------------------------~-------------~------------~--------------------------  208 (346)
                                                +             .            .                          
T Consensus       363 ~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~  442 (603)
T KOG0318|consen  363 TNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPI  442 (603)
T ss_pred             cceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeecc
Confidence                                      0             0            0                          


Q ss_pred             cc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCC-cceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCC
Q 019059          209 AH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK-APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSN  286 (346)
Q Consensus       209 ~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~  286 (346)
                      +. ..+++++|++. .+++|+.|+.|++|.+.... .....+..|..+|+++++||++ .+||++...+.+.+||+.+  
T Consensus       443 ~y~~s~vAv~~~~~-~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~-~yla~~Da~rkvv~yd~~s--  518 (603)
T KOG0318|consen  443 GYESSAVAVSPDGS-EVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDG-AYLAAGDASRKVVLYDVAS--  518 (603)
T ss_pred             ccccceEEEcCCCC-EEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCC-cEEEEeccCCcEEEEEccc--
Confidence            00 56788899998 89999999999999988533 2333556799999999999999 9999999999999999998  


Q ss_pred             CCCCCcccccCCcccccccc-ccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeecC
Q 019059          287 HDELPSESLVESPNQRANSL-LNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLEK  346 (346)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~~  346 (346)
                                       .+. .....-|...|.+++|+|+.. ++|+|+.|..|.||++++
T Consensus       519 -----------------~~~~~~~w~FHtakI~~~aWsP~n~-~vATGSlDt~Viiysv~k  561 (603)
T KOG0318|consen  519 -----------------REVKTNRWAFHTAKINCVAWSPNNK-LVATGSLDTNVIIYSVKK  561 (603)
T ss_pred             -----------------CceecceeeeeeeeEEEEEeCCCce-EEEeccccceEEEEEccC
Confidence                             333 233345899999999999997 999999999999999874

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=6.3e-36  Score=233.82  Aligned_cols=243  Identities=17%  Similarity=0.279  Sum_probs=219.8

Q ss_pred             EeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEE
Q 019059           58 CEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKL  137 (346)
Q Consensus        58 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  137 (346)
                      .+.+.+|.+.|.|+++.|.++.+++    |+.|++++|||+.         +++...++.+|...|..+++|+-..| ++
T Consensus       144 ~rVi~gHlgWVr~vavdP~n~wf~t----gs~DrtikIwDla---------tg~LkltltGhi~~vr~vavS~rHpY-lF  209 (460)
T KOG0285|consen  144 YRVISGHLGWVRSVAVDPGNEWFAT----GSADRTIKIWDLA---------TGQLKLTLTGHIETVRGVAVSKRHPY-LF  209 (460)
T ss_pred             hhhhhhccceEEEEeeCCCceeEEe----cCCCceeEEEEcc---------cCeEEEeecchhheeeeeeecccCce-EE
Confidence            3678899999999999998777776    5899999999999         88999999999999999999999997 77


Q ss_pred             EEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEE
Q 019059          138 VSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNV  214 (346)
Q Consensus       138 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~  214 (346)
                      +++.|+.|+.||++.++....     ..+|...|++++.+|.-..|++++.|.++++||+++...+..+. +|   |.++
T Consensus       210 s~gedk~VKCwDLe~nkvIR~-----YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~-GH~~~V~~V  283 (460)
T KOG0285|consen  210 SAGEDKQVKCWDLEYNKVIRH-----YHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLS-GHTNPVASV  283 (460)
T ss_pred             EecCCCeeEEEechhhhhHHH-----hccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEec-CCCCcceeE
Confidence            778999999999996553333     35688899999999999999999999999999999999999887 77   9999


Q ss_pred             EeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCccc
Q 019059          215 DYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSES  294 (346)
Q Consensus       215 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  294 (346)
                      .+.|.++ .+++|+.|++|++||++. ++...++..|...|.+++.+|.. ..||+++.|. |+-|++..          
T Consensus       284 ~~~~~dp-qvit~S~D~tvrlWDl~a-gkt~~tlt~hkksvral~lhP~e-~~fASas~dn-ik~w~~p~----------  349 (460)
T KOG0285|consen  284 MCQPTDP-QVITGSHDSTVRLWDLRA-GKTMITLTHHKKSVRALCLHPKE-NLFASASPDN-IKQWKLPE----------  349 (460)
T ss_pred             EeecCCC-ceEEecCCceEEEeeecc-CceeEeeecccceeeEEecCCch-hhhhccCCcc-ceeccCCc----------
Confidence            9999888 899999999999999998 55778888899999999999998 8999999885 99999998          


Q ss_pred             ccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          295 LVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                               +..+..+.+|...|.+++.+.|+  ++++|++.|.+.+||.+
T Consensus       350 ---------g~f~~nlsgh~~iintl~~nsD~--v~~~G~dng~~~fwdwk  389 (460)
T KOG0285|consen  350 ---------GEFLQNLSGHNAIINTLSVNSDG--VLVSGGDNGSIMFWDWK  389 (460)
T ss_pred             ---------cchhhccccccceeeeeeeccCc--eEEEcCCceEEEEEecC
Confidence                     89999999999999999999987  68999999999999964

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=6.1e-34  Score=214.80  Aligned_cols=294  Identities=19%  Similarity=0.314  Sum_probs=225.7

Q ss_pred             cccceeeEeeeccCCCC-cceEEEeecccCCCCeEEEEEecCCCCeEEEee--eeccccceEEeeecCCCCceEEEEeec
Q 019059           11 GLKYQARCISDVKADTD-HTSFLTGTLSLKEENEVHLLRLSSGGTELICEG--LFSHPNEIWDLSSCPFDQRIFSTVFST   87 (346)
Q Consensus        11 ~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~~~~~~~   87 (346)
                      .++.+...+-.+.++|. +..|+.+    +.+..|++|..... ....++.  -.+|+..|.+++|+|.|++|+++    
T Consensus         9 ~~~gh~~r~W~~awhp~~g~ilAsc----g~Dk~vriw~~~~~-~s~~ck~vld~~hkrsVRsvAwsp~g~~La~a----   79 (312)
T KOG0645|consen    9 KLSGHKDRVWSVAWHPGKGVILASC----GTDKAVRIWSTSSG-DSWTCKTVLDDGHKRSVRSVAWSPHGRYLASA----   79 (312)
T ss_pred             eecCCCCcEEEEEeccCCceEEEee----cCCceEEEEecCCC-CcEEEEEeccccchheeeeeeecCCCcEEEEe----
Confidence            34444444555666666 3334333    57889999998852 2233332  24799999999999999988875    


Q ss_pred             CCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCC
Q 019059           88 GESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGM  167 (346)
Q Consensus        88 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~  167 (346)
                      +.|.++.||.-.       ....+++..+.+|...|.|++|+++|.+ +++++.|+.|-||.+..+....  ...-...|
T Consensus        80 SFD~t~~Iw~k~-------~~efecv~~lEGHEnEVK~Vaws~sG~~-LATCSRDKSVWiWe~deddEfe--c~aVL~~H  149 (312)
T KOG0645|consen   80 SFDATVVIWKKE-------DGEFECVATLEGHENEVKCVAWSASGNY-LATCSRDKSVWIWEIDEDDEFE--CIAVLQEH  149 (312)
T ss_pred             eccceEEEeecC-------CCceeEEeeeeccccceeEEEEcCCCCE-EEEeeCCCeEEEEEecCCCcEE--EEeeeccc
Confidence            799999999865       3467899999999999999999999995 7777899999999998544322  12234568


Q ss_pred             ceeeEEEEeCCCCCcEEEEecCCeEEEEEccCC---Cccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccC
Q 019059          168 LHYLSGGAWDPHDVNAVAATCESSVQFWDLRSM---GKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRML  241 (346)
Q Consensus       168 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  241 (346)
                      ...|..+.|+|....|++++.|.+|++|+-..+   .+..++. +|   |.+++|++.|. .++++++|++++||-... 
T Consensus       150 tqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~-g~~~TVW~~~F~~~G~-rl~s~sdD~tv~Iw~~~~-  226 (312)
T KOG0645|consen  150 TQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLD-GHENTVWSLAFDNIGS-RLVSCSDDGTVSIWRLYT-  226 (312)
T ss_pred             cccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEec-CccceEEEEEecCCCc-eEEEecCCcceEeeeecc-
Confidence            889999999999999999999999999987732   3566666 45   99999999997 899999999999998663 


Q ss_pred             CcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccc-ccccccceeeEE
Q 019059          242 KAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLN-SYSDYEDSVYGL  320 (346)
Q Consensus       242 ~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~  320 (346)
                      .  +.  ..|...++.+.|. +  ..|++++.|+.|++|.-....             ..+..+++. .-..|...|+++
T Consensus       227 ~--~~--~~~sr~~Y~v~W~-~--~~IaS~ggD~~i~lf~~s~~~-------------d~p~~~l~~~~~~aHe~dVNsV  286 (312)
T KOG0645|consen  227 D--LS--GMHSRALYDVPWD-N--GVIASGGGDDAIRLFKESDSP-------------DEPSWNLLAKKEGAHEVDVNSV  286 (312)
T ss_pred             C--cc--hhcccceEeeeec-c--cceEeccCCCEEEEEEecCCC-------------CCchHHHHHhhhcccccccceE
Confidence            1  11  1377899999999 4  589999999999999766410             011123332 445688899999


Q ss_pred             EeCCCCCcEEEEeecCCeEEEeeecC
Q 019059          321 AWSSREPWIFASLSYDGRVRNHMLEK  346 (346)
Q Consensus       321 ~~~~~~~~~l~s~~~d~~v~vw~~~~  346 (346)
                      .|+|..+.+|++++.||.|++|.++.
T Consensus       287 ~w~p~~~~~L~s~~DDG~v~~W~l~~  312 (312)
T KOG0645|consen  287 QWNPKVSNRLASGGDDGIVNFWELEI  312 (312)
T ss_pred             EEcCCCCCceeecCCCceEEEEEecC
Confidence            99996556899999999999999863

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=6.9e-34  Score=235.84  Aligned_cols=281  Identities=21%  Similarity=0.361  Sum_probs=232.4

Q ss_pred             ceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceE
Q 019059           14 YQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGA   93 (346)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i   93 (346)
                      .+...+..+.+++++..++++.    .++.+.+|++....   ....+..|...+..+.|+|+++.++++    +.++.|
T Consensus         7 ~h~~~i~~~~~~~~~~~l~~~~----~~g~i~i~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~----~~~~~i   75 (289)
T cd00200           7 GHTGGVTCVAFSPDGKLLATGS----GDGTIKVWDLETGE---LLRTLKGHTGPVRDVAASADGTYLASG----SSDKTI   75 (289)
T ss_pred             ccCCCEEEEEEcCCCCEEEEee----cCcEEEEEEeeCCC---cEEEEecCCcceeEEEECCCCCEEEEE----cCCCeE
Confidence            3456677888888888888774    47899999998754   234556788999999999999777775    679999


Q ss_pred             EEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEE
Q 019059           94 AIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSG  173 (346)
Q Consensus        94 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~  173 (346)
                      ++|++.         ..+.+..+..|...|.++.|++++. ++++++.++.|.+||+.+.+....+.     .|...+.+
T Consensus        76 ~i~~~~---------~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~i~~  140 (289)
T cd00200          76 RLWDLE---------TGECVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGKCLTTLR-----GHTDWVNS  140 (289)
T ss_pred             EEEEcC---------cccceEEEeccCCcEEEEEEcCCCC-EEEEecCCCeEEEEECCCcEEEEEec-----cCCCcEEE
Confidence            999998         4466777888988999999999966 35555559999999998554332222     35568999


Q ss_pred             EEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc--eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCC
Q 019059          174 GAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGH  251 (346)
Q Consensus       174 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  251 (346)
                      ++|+|++..+++++.++.|++||+++++....+....  +.++.|+|++. .+++++.++.|++||++. ..++..+..|
T Consensus       141 ~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~d~~~-~~~~~~~~~~  218 (289)
T cd00200         141 VAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGE-KLLSSSSDGTIKLWDLST-GKCLGTLRGH  218 (289)
T ss_pred             EEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcC-EEEEecCCCcEEEEECCC-Cceecchhhc
Confidence            9999998777777779999999999888777776322  99999999997 777788899999999987 5567777788


Q ss_pred             CcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEE
Q 019059          252 THWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFA  331 (346)
Q Consensus       252 ~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  331 (346)
                      ...+.++.|+|++ .++++++.|+.|++||+..                   +.....+..|...|.+++|+|+++ +|+
T Consensus       219 ~~~i~~~~~~~~~-~~~~~~~~~~~i~i~~~~~-------------------~~~~~~~~~~~~~i~~~~~~~~~~-~l~  277 (289)
T cd00200         219 ENGVNSVAFSPDG-YLLASGSEDGTIRVWDLRT-------------------GECVQTLSGHTNSVTSLAWSPDGK-RLA  277 (289)
T ss_pred             CCceEEEEEcCCC-cEEEEEcCCCcEEEEEcCC-------------------ceeEEEccccCCcEEEEEECCCCC-EEE
Confidence            9999999999997 8999998899999999997                   677788888988999999999987 899


Q ss_pred             EeecCCeEEEee
Q 019059          332 SLSYDGRVRNHM  343 (346)
Q Consensus       332 s~~~d~~v~vw~  343 (346)
                      +++.|+.+++|+
T Consensus       278 ~~~~d~~i~iw~  289 (289)
T cd00200         278 SGSADGTIRIWD  289 (289)
T ss_pred             EecCCCeEEecC
Confidence            999999999996

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=3.6e-35  Score=224.43  Aligned_cols=251  Identities=18%  Similarity=0.284  Sum_probs=210.0

Q ss_pred             EeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEE
Q 019059           58 CEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKL  137 (346)
Q Consensus        58 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  137 (346)
                      ...+.+|++.|+.+.|+|+|..+++    +|.|..|.+|+...        ..+....+++|.+.|..+.|.+|+.. ++
T Consensus        40 ~m~l~gh~geI~~~~F~P~gs~~aS----gG~Dr~I~LWnv~g--------dceN~~~lkgHsgAVM~l~~~~d~s~-i~  106 (338)
T KOG0265|consen   40 IMLLPGHKGEIYTIKFHPDGSCFAS----GGSDRAIVLWNVYG--------DCENFWVLKGHSGAVMELHGMRDGSH-IL  106 (338)
T ss_pred             hhhcCCCcceEEEEEECCCCCeEee----cCCcceEEEEeccc--------cccceeeeccccceeEeeeeccCCCE-EE
Confidence            3567899999999999999998888    58999999999752        45666678899999999999999995 77


Q ss_pred             EEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEE-EEecCCeEEEEEccCCCccceeeccc-eeEEE
Q 019059          138 VSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAV-AATCESSVQFWDLRSMGKTNSIEHAH-VRNVD  215 (346)
Q Consensus       138 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~-v~~~~  215 (346)
                      +++.|.+|+.||+++++...+.     .+|...++.+.-+.-|..++ +++.|+++++||+|+..+++++.... ++++.
T Consensus       107 S~gtDk~v~~wD~~tG~~~rk~-----k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~  181 (338)
T KOG0265|consen  107 SCGTDKTVRGWDAETGKRIRKH-----KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVG  181 (338)
T ss_pred             EecCCceEEEEecccceeeehh-----ccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEE
Confidence            7788999999999988765544     34666788887554455544 55679999999999999998887555 99999


Q ss_pred             eCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccc
Q 019059          216 YDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESL  295 (346)
Q Consensus       216 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  295 (346)
                      |..++. -+.+|+-|+.|++||+|+ ......+.+|..+|+.+..+|+| .++.+-+.|.++++||++....        
T Consensus       182 f~d~s~-qv~sggIdn~ikvWd~r~-~d~~~~lsGh~DtIt~lsls~~g-s~llsnsMd~tvrvwd~rp~~p--------  250 (338)
T KOG0265|consen  182 FKDTSD-QVISGGIDNDIKVWDLRK-NDGLYTLSGHADTITGLSLSRYG-SFLLSNSMDNTVRVWDVRPFAP--------  250 (338)
T ss_pred             eccccc-ceeeccccCceeeecccc-CcceEEeecccCceeeEEeccCC-CccccccccceEEEEEecccCC--------
Confidence            999998 789999999999999998 66899999999999999999999 9999999999999999996211        


Q ss_pred             cCCccccccccccccccccc----eeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          296 VESPNQRANSLLNSYSDYED----SVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                             ...++..+.+|..    .....+|+|++. .+.+|+.|+.+++||..
T Consensus       251 -------~~R~v~if~g~~hnfeknlL~cswsp~~~-~i~ags~dr~vyvwd~~  296 (338)
T KOG0265|consen  251 -------SQRCVKIFQGHIHNFEKNLLKCSWSPNGT-KITAGSADRFVYVWDTT  296 (338)
T ss_pred             -------CCceEEEeecchhhhhhhcceeeccCCCC-ccccccccceEEEeecc
Confidence                   1344666666543    356789999997 89999999999999964

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2e-34  Score=251.38  Aligned_cols=284  Identities=19%  Similarity=0.339  Sum_probs=235.7

Q ss_pred             eeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEE
Q 019059           16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAI   95 (346)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~v   95 (346)
                      .+.+..+.+.+++..++.+    ..++.+.+|....... .....+.+|...|.+++|+|++++++++    +.|++|++
T Consensus       159 ~~sv~~~~fs~~g~~l~~~----~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~~l~s~----s~D~tiri  229 (456)
T KOG0266|consen  159 CPSVTCVDFSPDGRALAAA----SSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGSYLLSG----SDDKTLRI  229 (456)
T ss_pred             cCceEEEEEcCCCCeEEEc----cCCCcEEEeecccccc-hhhccccccccceeeeEECCCCcEEEEe----cCCceEEE
Confidence            4667777788888776665    3567788888844332 2334557899999999999999988875    79999999


Q ss_pred             EecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEE
Q 019059           96 WQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGA  175 (346)
Q Consensus        96 w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~  175 (346)
                      ||+..        ....++++++|...|++++|+|++ .++++++.|++|++||+++++....+     .+|...|.+++
T Consensus       230 wd~~~--------~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l-----~~hs~~is~~~  295 (456)
T KOG0266|consen  230 WDLKD--------DGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKL-----KGHSDGISGLA  295 (456)
T ss_pred             eeccC--------CCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEee-----eccCCceEEEE
Confidence            99952        568889999999999999999999 46888899999999999975543333     45777999999


Q ss_pred             eCCCCCcEEEEecCCeEEEEEccCCC--ccceeeccc----eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeec
Q 019059          176 WDPHDVNAVAATCESSVQFWDLRSMG--KTNSIEHAH----VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP  249 (346)
Q Consensus       176 ~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~----v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  249 (346)
                      |++++..+++++.|+.|++||+.++.  +...+....    ++++.|+|++. +++++..|+.+++||++. ...+..+.
T Consensus       296 f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~-~ll~~~~d~~~~~w~l~~-~~~~~~~~  373 (456)
T KOG0266|consen  296 FSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGK-YLLSASLDRTLKLWDLRS-GKSVGTYT  373 (456)
T ss_pred             ECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCc-EEEEecCCCeEEEEEccC-Ccceeeec
Confidence            99999999999999999999999998  444444222    69999999998 899999999999999997 55778888


Q ss_pred             CCCcce---EEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccc-cceeeEEEeCCC
Q 019059          250 GHTHWT---WAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDY-EDSVYGLAWSSR  325 (346)
Q Consensus       250 ~~~~~v---~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~  325 (346)
                      +|...+   .+...++.+ .++++|+.|+.|++||+.+                   +..+..+.+| ...+..++|+|.
T Consensus       374 ~~~~~~~~~~~~~~~~~~-~~i~sg~~d~~v~~~~~~s-------------------~~~~~~l~~h~~~~~~~~~~~~~  433 (456)
T KOG0266|consen  374 GHSNLVRCIFSPTLSTGG-KLIYSGSEDGSVYVWDSSS-------------------GGILQRLEGHSKAAVSDLSSHPT  433 (456)
T ss_pred             ccCCcceeEecccccCCC-CeEEEEeCCceEEEEeCCc-------------------cchhhhhcCCCCCceeccccCCC
Confidence            888753   334456778 9999999999999999998                   8889999999 888999999999


Q ss_pred             CCcEEEEee--cCCeEEEeeec
Q 019059          326 EPWIFASLS--YDGRVRNHMLE  345 (346)
Q Consensus       326 ~~~~l~s~~--~d~~v~vw~~~  345 (346)
                      .+ ++++.+  .|+.+++|..+
T Consensus       434 ~~-~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  434 EN-LIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             cC-eeeecCcCCCceEEEecCC
Confidence            87 888888  79999999754

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5.4e-34  Score=242.57  Aligned_cols=281  Identities=13%  Similarity=0.230  Sum_probs=231.0

Q ss_pred             eEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEE
Q 019059           17 RCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIW   96 (346)
Q Consensus        17 ~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw   96 (346)
                      --+.+..+.+....+++|    ...+..+++.+++-+   ....+.--..+|..++|+..|..++.+   ++.-|.+-||
T Consensus       266 ~kvtaa~fH~~t~~lvvg----FssG~f~LyelP~f~---lih~LSis~~~I~t~~~N~tGDWiA~g---~~klgQLlVw  335 (893)
T KOG0291|consen  266 SKVTAAAFHKGTNLLVVG----FSSGEFGLYELPDFN---LIHSLSISDQKILTVSFNSTGDWIAFG---CSKLGQLLVW  335 (893)
T ss_pred             cceeeeeccCCceEEEEE----ecCCeeEEEecCCce---EEEEeecccceeeEEEecccCCEEEEc---CCccceEEEE
Confidence            345566667677667666    244667777777742   334444445689999999999999987   4677899999


Q ss_pred             ecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEe
Q 019059           97 QIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAW  176 (346)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~  176 (346)
                      ++.         ....+...++|...+.+++++|||+ +++++++||.|+|||...+-+...+     ..|...|+.+.|
T Consensus       336 eWq---------sEsYVlKQQgH~~~i~~l~YSpDgq-~iaTG~eDgKVKvWn~~SgfC~vTF-----teHts~Vt~v~f  400 (893)
T KOG0291|consen  336 EWQ---------SESYVLKQQGHSDRITSLAYSPDGQ-LIATGAEDGKVKVWNTQSGFCFVTF-----TEHTSGVTAVQF  400 (893)
T ss_pred             Eee---------ccceeeeccccccceeeEEECCCCc-EEEeccCCCcEEEEeccCceEEEEe-----ccCCCceEEEEE
Confidence            998         4456666779999999999999999 4777789999999999876544333     447889999999


Q ss_pred             CCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCC-eEEEEEcccCCcceeeecCCC
Q 019059          177 DPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADES-GIHLWDLRMLKAPIQELPGHT  252 (346)
Q Consensus       177 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~  252 (346)
                      +..++.+++.+-||+|+.||+...+..+++..+.   ..|++..|.|. ++++|+.|. .|.+|++++ ++.+..+.+|+
T Consensus       401 ~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGe-lV~AG~~d~F~IfvWS~qT-GqllDiLsGHE  478 (893)
T KOG0291|consen  401 TARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGE-LVCAGAQDSFEIFVWSVQT-GQLLDILSGHE  478 (893)
T ss_pred             EecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCC-EEEeeccceEEEEEEEeec-CeeeehhcCCC
Confidence            9999999999999999999999999999887555   88999999998 888888776 699999998 77899999999


Q ss_pred             cceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEE
Q 019059          253 HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFAS  332 (346)
Q Consensus       253 ~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  332 (346)
                      ++|.+++|+|.+ ..|+++|.|.+||+||+-.                  ....+.++. +.+.+..++|+|+|+ -|++
T Consensus       479 gPVs~l~f~~~~-~~LaS~SWDkTVRiW~if~------------------s~~~vEtl~-i~sdvl~vsfrPdG~-elaV  537 (893)
T KOG0291|consen  479 GPVSGLSFSPDG-SLLASGSWDKTVRIWDIFS------------------SSGTVETLE-IRSDVLAVSFRPDGK-ELAV  537 (893)
T ss_pred             CcceeeEEcccc-CeEEeccccceEEEEEeec------------------cCceeeeEe-eccceeEEEEcCCCC-eEEE
Confidence            999999999999 9999999999999999976                  122344443 455699999999998 8999


Q ss_pred             eecCCeEEEeeec
Q 019059          333 LSYDGRVRNHMLE  345 (346)
Q Consensus       333 ~~~d~~v~vw~~~  345 (346)
                      +..||.|.+||++
T Consensus       538 aTldgqItf~d~~  550 (893)
T KOG0291|consen  538 ATLDGQITFFDIK  550 (893)
T ss_pred             EEecceEEEEEhh
Confidence            9999999999974

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.8e-34  Score=243.70  Aligned_cols=279  Identities=18%  Similarity=0.277  Sum_probs=232.5

Q ss_pred             CCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccC
Q 019059           24 ADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYG  103 (346)
Q Consensus        24 ~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~  103 (346)
                      ..++...+++++.    ...++++++...    .+..+.+|.+.|.++....+|-.|++    ++.|.++++|.+++.  
T Consensus       332 lG~e~~~laVATN----s~~lr~y~~~~~----~c~ii~GH~e~vlSL~~~~~g~llat----~sKD~svilWr~~~~--  397 (775)
T KOG0319|consen  332 LGPEESHLAVATN----SPELRLYTLPTS----YCQIIPGHTEAVLSLDVWSSGDLLAT----GSKDKSVILWRLNNN--  397 (775)
T ss_pred             cCCccceEEEEeC----CCceEEEecCCC----ceEEEeCchhheeeeeecccCcEEEE----ecCCceEEEEEecCC--
Confidence            3455566666653    345666655553    34577899999999995555644444    489999999988421  


Q ss_pred             CCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeec----ccCCCceeeEEEEeCCC
Q 019059          104 QLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK----QSSGMLHYLSGGAWDPH  179 (346)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~  179 (346)
                         ....-++....+|...|.+++++..+..++++++.|.++++|++...+........    ....|...|++++.+|+
T Consensus       398 ---~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~n  474 (775)
T KOG0319|consen  398 ---CSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPN  474 (775)
T ss_pred             ---cchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCC
Confidence               11345666778999999999999888877777799999999999863322222111    23457789999999999


Q ss_pred             CCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceE
Q 019059          180 DVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTW  256 (346)
Q Consensus       180 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~  256 (346)
                      .+.+++++.|.+.++|+++......++. +|   +.++.|+|.+. ++++++.|++|+||.+.+ ..++++|.+|...|.
T Consensus       475 dkLiAT~SqDktaKiW~le~~~l~~vLs-GH~RGvw~V~Fs~~dq-~laT~SgD~TvKIW~is~-fSClkT~eGH~~aVl  551 (775)
T KOG0319|consen  475 DKLIATGSQDKTAKIWDLEQLRLLGVLS-GHTRGVWCVSFSKNDQ-LLATCSGDKTVKIWSIST-FSCLKTFEGHTSAVL  551 (775)
T ss_pred             CceEEecccccceeeecccCceEEEEee-CCccceEEEEeccccc-eeEeccCCceEEEEEecc-ceeeeeecCccceeE
Confidence            9999999999999999999888888887 77   99999999998 999999999999999998 559999999999999


Q ss_pred             EEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecC
Q 019059          257 AVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYD  336 (346)
Q Consensus       257 ~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  336 (346)
                      .+.|-.++ ..|++++.||-|++|++.+                   .+++.++..|...|++++-+|... ++++|+.|
T Consensus       552 ra~F~~~~-~qliS~~adGliKlWnikt-------------------~eC~~tlD~H~DrvWaL~~~~~~~-~~~tgg~D  610 (775)
T KOG0319|consen  552 RASFIRNG-KQLISAGADGLIKLWNIKT-------------------NECEMTLDAHNDRVWALSVSPLLD-MFVTGGGD  610 (775)
T ss_pred             eeeeeeCC-cEEEeccCCCcEEEEeccc-------------------hhhhhhhhhccceeEEEeecCccc-eeEecCCC
Confidence            99999999 9999999999999999999                   999999999999999999999997 99999999


Q ss_pred             CeEEEee
Q 019059          337 GRVRNHM  343 (346)
Q Consensus       337 ~~v~vw~  343 (346)
                      |.|.+|.
T Consensus       611 g~i~~wk  617 (775)
T KOG0319|consen  611 GRIIFWK  617 (775)
T ss_pred             eEEEEee
Confidence            9999994

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=5.8e-33  Score=259.37  Aligned_cols=294  Identities=13%  Similarity=0.226  Sum_probs=218.5

Q ss_pred             eeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCC---CCeE-EEeeeeccccceEEeeecCCCCceEEEEeecCCcc
Q 019059           16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSG---GTEL-ICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESY   91 (346)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~---~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~   91 (346)
                      ...+..+.+++++..+++|    +.++.|.+|++...   .... .......+...|.+++|+|.....+++   ++.|+
T Consensus       483 ~~~V~~i~fs~dg~~latg----g~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las---~~~Dg  555 (793)
T PLN00181        483 SNLVCAIGFDRDGEFFATA----GVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVAS---SNFEG  555 (793)
T ss_pred             CCcEEEEEECCCCCEEEEE----eCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEE---EeCCC
Confidence            3457778888888888876    46889999987531   1100 011122345689999999864444444   37899


Q ss_pred             eEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceee
Q 019059           92 GAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYL  171 (346)
Q Consensus        92 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v  171 (346)
                      .|++||+.         ..+.+..+..|...|++++|+|....++++++.|+.|++||+.++.....+..      ...+
T Consensus       556 ~v~lWd~~---------~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~------~~~v  620 (793)
T PLN00181        556 VVQVWDVA---------RSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT------KANI  620 (793)
T ss_pred             eEEEEECC---------CCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec------CCCe
Confidence            99999998         66788888999999999999974433577888899999999987654333321      2368


Q ss_pred             EEEEeC-CCCCcEEEEecCCeEEEEEccCCCc-cceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccC-----
Q 019059          172 SGGAWD-PHDVNAVAATCESSVQFWDLRSMGK-TNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRML-----  241 (346)
Q Consensus       172 ~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----  241 (346)
                      .++.|+ +++..+++++.|+.|++||+++.+. ...+. +|   |.++.|. ++. .+++++.|+.|++||++..     
T Consensus       621 ~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~-~h~~~V~~v~f~-~~~-~lvs~s~D~~ikiWd~~~~~~~~~  697 (793)
T PLN00181        621 CCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI-GHSKTVSYVRFV-DSS-TLVSSSTDNTLKLWDLSMSISGIN  697 (793)
T ss_pred             EEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEec-CCCCCEEEEEEe-CCC-EEEEEECCCEEEEEeCCCCccccC
Confidence            889995 5688899999999999999997763 33443 55   9999997 555 7999999999999999742     


Q ss_pred             CcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccc--cccccccceeeE
Q 019059          242 KAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLL--NSYSDYEDSVYG  319 (346)
Q Consensus       242 ~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~  319 (346)
                      ..++..+.+|...+.+++|+|++ .+|++|+.|+.|++|+........    .....    ....+  .....|...|.+
T Consensus       698 ~~~l~~~~gh~~~i~~v~~s~~~-~~lasgs~D~~v~iw~~~~~~~~~----s~~~~----~~~~~~~~~~~~~~~~V~~  768 (793)
T PLN00181        698 ETPLHSFMGHTNVKNFVGLSVSD-GYIATGSETNEVFVYHKAFPMPVL----SYKFK----TIDPVSGLEVDDASQFISS  768 (793)
T ss_pred             CcceEEEcCCCCCeeEEEEcCCC-CEEEEEeCCCEEEEEECCCCCceE----EEecc----cCCcccccccCCCCcEEEE
Confidence            24678899999999999999999 999999999999999987511000    00000    00000  112346678999


Q ss_pred             EEeCCCCCcEEEEeecCCeEEEeee
Q 019059          320 LAWSSREPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       320 ~~~~~~~~~~l~s~~~d~~v~vw~~  344 (346)
                      ++|+|++. +|++++.||.|+||++
T Consensus       769 v~ws~~~~-~lva~~~dG~I~i~~~  792 (793)
T PLN00181        769 VCWRGQSS-TLVAANSTGNIKILEM  792 (793)
T ss_pred             EEEcCCCC-eEEEecCCCcEEEEec
Confidence            99999997 8999999999999986

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.9e-33  Score=220.41  Aligned_cols=283  Identities=15%  Similarity=0.229  Sum_probs=229.3

Q ss_pred             ccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcc
Q 019059           12 LKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESY   91 (346)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~   91 (346)
                      +..++..+-++..+|+..-.+.|    +.+..-++|+.....   ..-.+.+|++.|.++.|+.++.+|++    |+-+|
T Consensus        60 F~~H~~svFavsl~P~~~l~aTG----GgDD~AflW~~~~ge---~~~eltgHKDSVt~~~FshdgtlLAT----GdmsG  128 (399)
T KOG0296|consen   60 FDKHTDSVFAVSLHPNNNLVATG----GGDDLAFLWDISTGE---FAGELTGHKDSVTCCSFSHDGTLLAT----GDMSG  128 (399)
T ss_pred             hhhcCCceEEEEeCCCCceEEec----CCCceEEEEEccCCc---ceeEecCCCCceEEEEEccCceEEEe----cCCCc
Confidence            44455666677777755444444    578899999998865   44667899999999999999988888    58999


Q ss_pred             eEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceee
Q 019059           92 GAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYL  171 (346)
Q Consensus        92 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v  171 (346)
                      .|+||...         ++.....+...-+.|.-+.|+|.+. ++++++.||.+.+|.+.+...     .+-..+|..++
T Consensus       129 ~v~v~~~s---------tg~~~~~~~~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~~~-----~kv~~Gh~~~c  193 (399)
T KOG0296|consen  129 KVLVFKVS---------TGGEQWKLDQEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQAL-----CKVMSGHNSPC  193 (399)
T ss_pred             cEEEEEcc---------cCceEEEeecccCceEEEEeccccc-EEEeecCCCcEEEEECCCcce-----eeEecCCCCCc
Confidence            99999998         5566566655567788899999776 688889999999999986422     22235688899


Q ss_pred             EEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeecc------------------------------------------
Q 019059          172 SGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA------------------------------------------  209 (346)
Q Consensus       172 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~------------------------------------------  209 (346)
                      ++-.|.|+|+.++++..||+|++|++.++++...+...                                          
T Consensus       194 t~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~  273 (399)
T KOG0296|consen  194 TCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNG  273 (399)
T ss_pred             ccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCC
Confidence            99999999999999999999999999998776554410                                          


Q ss_pred             --------c------eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCC
Q 019059          210 --------H------VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDS  275 (346)
Q Consensus       210 --------~------v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~  275 (346)
                              +      |..+.|+..-+ +.++|+-||+|.|||+.. . .++..-.|..+|..+.|-+ . .+|++++.||
T Consensus       274 ~~~~l~~~~e~~~esve~~~~ss~lp-L~A~G~vdG~i~iyD~a~-~-~~R~~c~he~~V~~l~w~~-t-~~l~t~c~~g  348 (399)
T KOG0296|consen  274 TVPELKPSQEELDESVESIPSSSKLP-LAACGSVDGTIAIYDLAA-S-TLRHICEHEDGVTKLKWLN-T-DYLLTACANG  348 (399)
T ss_pred             CCccccccchhhhhhhhhcccccccc-hhhcccccceEEEEeccc-c-hhheeccCCCceEEEEEcC-c-chheeeccCc
Confidence                    0      22223333334 778899999999999986 3 3445556999999999999 4 7899999999


Q ss_pred             eEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          276 TVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       276 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      .|+.||.++                   +++++++.+|...|.+++++|+.+ +++++|.|++.+||++.
T Consensus       349 ~v~~wDaRt-------------------G~l~~~y~GH~~~Il~f~ls~~~~-~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  349 KVRQWDART-------------------GQLKFTYTGHQMGILDFALSPQKR-LVVTVSDDNTALVFEVP  398 (399)
T ss_pred             eEEeeeccc-------------------cceEEEEecCchheeEEEEcCCCc-EEEEecCCCeEEEEecC
Confidence            999999999                   999999999999999999999997 99999999999999875

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.5e-34  Score=214.25  Aligned_cols=246  Identities=14%  Similarity=0.256  Sum_probs=198.8

Q ss_pred             EEeeecCCC-CceEEEE---eecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCe
Q 019059           69 WDLSSCPFD-QRIFSTV---FSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEEN  144 (346)
Q Consensus        69 ~~~~~~~~~-~~l~~~~---~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~  144 (346)
                      .++.|||-- .+|++++   +.=...|.+.|-++..      .+.......+ .-.+.+..++|++.....+++++.||.
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~------~~gi~e~~s~-d~~D~LfdV~Wse~~e~~~~~a~GDGS   84 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTD------PKGIQECQSY-DTEDGLFDVAWSENHENQVIAASGDGS   84 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCC------CCCeEEEEee-ecccceeEeeecCCCcceEEEEecCce
Confidence            467888842 2333322   1112356788888751      1123444444 346789999999999888888888999


Q ss_pred             EEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCC-cEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCC
Q 019059          145 IFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDV-NAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKK  220 (346)
Q Consensus       145 i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~  220 (346)
                      +++||+.....    .....+.|..+|.++.|++..+ .+++++-|++|++||...++.+.++. +|   |...+|+|..
T Consensus        85 Lrl~d~~~~s~----Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~-gh~~~Iy~a~~sp~~  159 (311)
T KOG0277|consen   85 LRLFDLTMPSK----PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFN-GHNSCIYQAAFSPHI  159 (311)
T ss_pred             EEEeccCCCCc----chhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeec-CCccEEEEEecCCCC
Confidence            99999664332    2233456888999999998554 46677789999999999999998887 66   9999999999


Q ss_pred             CcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcc
Q 019059          221 KHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPN  300 (346)
Q Consensus       221 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  300 (346)
                      ++++++++.|+++++||+|..++.+. +..|...+.++.|+...+..|+||+.|+.|++||++.                
T Consensus       160 ~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~----------------  222 (311)
T KOG0277|consen  160 PNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRN----------------  222 (311)
T ss_pred             CCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhh----------------
Confidence            98999999999999999998776555 8889999999999998889999999999999999998                


Q ss_pred             ccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          301 QRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       301 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                        ...++..+.+|.-.|+.++|||....+|++++.|-++||||.+
T Consensus       223 --~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~  265 (311)
T KOG0277|consen  223 --LRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPE  265 (311)
T ss_pred             --ccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccc
Confidence              3678899999999999999999887899999999999999986

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.7e-35  Score=251.08  Aligned_cols=246  Identities=18%  Similarity=0.277  Sum_probs=214.5

Q ss_pred             eeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEe
Q 019059           61 LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI  140 (346)
Q Consensus        61 ~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  140 (346)
                      +......|..++|+|..+.++++.    ..|.|++||..         -+.++..+..|+++|..++|+|+++ +++++|
T Consensus         5 fEskSsRvKglsFHP~rPwILtsl----HsG~IQlWDYR---------M~tli~rFdeHdGpVRgv~FH~~qp-lFVSGG   70 (1202)
T KOG0292|consen    5 FESKSSRVKGLSFHPKRPWILTSL----HSGVIQLWDYR---------MGTLIDRFDEHDGPVRGVDFHPTQP-LFVSGG   70 (1202)
T ss_pred             hhcccccccceecCCCCCEEEEee----cCceeeeehhh---------hhhHHhhhhccCCccceeeecCCCC-eEEecC
Confidence            334567899999999999999964    78899999998         7889999999999999999999999 577779


Q ss_pred             cCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeC
Q 019059          141 DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYD  217 (346)
Q Consensus       141 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~  217 (346)
                      +|..|++|+..+.+....+     .+|...|..+.|++.-+.+++++.|.+|+||+..+++++..+. +|   |.|..|+
T Consensus        71 DDykIkVWnYk~rrclftL-----~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavlt-GHnHYVMcAqFh  144 (1202)
T KOG0292|consen   71 DDYKIKVWNYKTRRCLFTL-----LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLT-GHNHYVMCAQFH  144 (1202)
T ss_pred             CccEEEEEecccceehhhh-----ccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEe-cCceEEEeeccC
Confidence            9999999999876554443     4688899999999999999999999999999999999998887 66   9999999


Q ss_pred             CCCCcEEEEecCCCeEEEEEcccCCc----------------------------ceeeecCCCcceEEEEeCCCCCcEEE
Q 019059          218 TKKKHLLVTAADESGIHLWDLRMLKA----------------------------PIQELPGHTHWTWAVCCNPEYDGFIL  269 (346)
Q Consensus       218 ~~~~~~l~~~~~dg~i~i~d~~~~~~----------------------------~~~~~~~~~~~v~~v~~~~~~~~~l~  269 (346)
                      |..+ ++++++-|.+||+||+.-.++                            ..+.+.+|...|+-++|+|.- .+|+
T Consensus       145 ptED-lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl-pliV  222 (1202)
T KOG0292|consen  145 PTED-LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL-PLIV  222 (1202)
T ss_pred             Cccc-eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc-ceEE
Confidence            9887 999999999999999752210                            124567899999999999999 8999


Q ss_pred             EecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeecC
Q 019059          270 SAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLEK  346 (346)
Q Consensus       270 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~~  346 (346)
                      +|++|..|++|.++..                 ..-.+.+..+|...|.++-|+|... ++++.|+|++|+|||+++
T Consensus       223 SG~DDRqVKlWrmnet-----------------KaWEvDtcrgH~nnVssvlfhp~q~-lIlSnsEDksirVwDm~k  281 (1202)
T KOG0292|consen  223 SGADDRQVKLWRMNET-----------------KAWEVDTCRGHYNNVSSVLFHPHQD-LILSNSEDKSIRVWDMTK  281 (1202)
T ss_pred             ecCCcceeeEEEeccc-----------------cceeehhhhcccCCcceEEecCccc-eeEecCCCccEEEEeccc
Confidence            9999999999999861                 1234567789999999999999876 999999999999999975

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.9e-34  Score=210.14  Aligned_cols=241  Identities=17%  Similarity=0.203  Sum_probs=205.5

Q ss_pred             eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEE
Q 019059           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV  138 (346)
Q Consensus        59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  138 (346)
                      ..+..|+++|.++.|+-+|++.+++    |+|.+|++|+.-         .+.+++++.+|..+|..++.+.|+.. +++
T Consensus        11 ~~l~~~qgaV~avryN~dGnY~ltc----GsdrtvrLWNp~---------rg~liktYsghG~EVlD~~~s~Dnsk-f~s   76 (307)
T KOG0316|consen   11 SILDCAQGAVRAVRYNVDGNYCLTC----GSDRTVRLWNPL---------RGALIKTYSGHGHEVLDAALSSDNSK-FAS   76 (307)
T ss_pred             eeecccccceEEEEEccCCCEEEEc----CCCceEEeeccc---------ccceeeeecCCCceeeeccccccccc-ccc
Confidence            4566799999999999999998885    899999999987         78999999999999999999999885 777


Q ss_pred             EecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCC--ccceeeccc--eeEE
Q 019059          139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG--KTNSIEHAH--VRNV  214 (346)
Q Consensus       139 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~--v~~~  214 (346)
                      ++.|..+.+||+++++...++     .+|...|+.++|+.+...+++++-|.++++||-++..  ++..+....  |.++
T Consensus        77 ~GgDk~v~vwDV~TGkv~Rr~-----rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si  151 (307)
T KOG0316|consen   77 CGGDKAVQVWDVNTGKVDRRF-----RGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSI  151 (307)
T ss_pred             CCCCceEEEEEcccCeeeeec-----ccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEE
Confidence            788999999999998765544     4578899999999999999999999999999998654  555555444  9999


Q ss_pred             EeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCccc
Q 019059          215 DYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSES  294 (346)
Q Consensus       215 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  294 (346)
                      ..+..   .+++|+.||+++.||+|. +.....+.  ..+|++++|++++ +....++.|+++++.|-.+          
T Consensus       152 ~v~~h---eIvaGS~DGtvRtydiR~-G~l~sDy~--g~pit~vs~s~d~-nc~La~~l~stlrLlDk~t----------  214 (307)
T KOG0316|consen  152 DVAEH---EIVAGSVDGTVRTYDIRK-GTLSSDYF--GHPITSVSFSKDG-NCSLASSLDSTLRLLDKET----------  214 (307)
T ss_pred             Eeccc---EEEeeccCCcEEEEEeec-ceeehhhc--CCcceeEEecCCC-CEEEEeeccceeeecccch----------
Confidence            88642   689999999999999997 44444444  4589999999999 9999999999999999999          


Q ss_pred             ccCCccccccccccccccccceee--EEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          295 LVESPNQRANSLLNSYSDYEDSVY--GLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                               ++++..+++|...=.  ..+++.... .+++|++||.|++|||.
T Consensus       215 ---------GklL~sYkGhkn~eykldc~l~qsdt-hV~sgSEDG~Vy~wdLv  257 (307)
T KOG0316|consen  215 ---------GKLLKSYKGHKNMEYKLDCCLNQSDT-HVFSGSEDGKVYFWDLV  257 (307)
T ss_pred             ---------hHHHHHhcccccceeeeeeeecccce-eEEeccCCceEEEEEec
Confidence                     999999999987544  344555554 89999999999999985

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.9e-33  Score=244.11  Aligned_cols=246  Identities=20%  Similarity=0.353  Sum_probs=206.1

Q ss_pred             eeeecc-ccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccce--eeeeeeccCCceEEEEeecCCCCc
Q 019059           59 EGLFSH-PNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLE--RIAALDAHVGKINCVLWWSSGRHD  135 (346)
Q Consensus        59 ~~~~~h-~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~  135 (346)
                      ..+..| ...|.++.|+|+|+.++++    +.++.+++|+..         ..+  ..+.+.+|...|.+++|+|++++ 
T Consensus       152 ~~~~~~~~~sv~~~~fs~~g~~l~~~----~~~~~i~~~~~~---------~~~~~~~~~l~~h~~~v~~~~fs~d~~~-  217 (456)
T KOG0266|consen  152 QTLAGHECPSVTCVDFSPDGRALAAA----SSDGLIRIWKLE---------GIKSNLLRELSGHTRGVSDVAFSPDGSY-  217 (456)
T ss_pred             eeecccccCceEEEEEcCCCCeEEEc----cCCCcEEEeecc---------cccchhhccccccccceeeeEECCCCcE-
Confidence            334344 6889999999999997775    689999999996         333  56667899999999999999994 


Q ss_pred             EEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---ee
Q 019059          136 KLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VR  212 (346)
Q Consensus       136 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~  212 (346)
                      +++++.|++|++||+.......+.    ..+|...|++++|+|+++.+++++.|++|++||++++++...+. +|   |+
T Consensus       218 l~s~s~D~tiriwd~~~~~~~~~~----l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~-~hs~~is  292 (456)
T KOG0266|consen  218 LLSGSDDKTLRIWDLKDDGRNLKT----LKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK-GHSDGIS  292 (456)
T ss_pred             EEEecCCceEEEeeccCCCeEEEE----ecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee-ccCCceE
Confidence            777788999999999533222222    24688899999999999999999999999999999999999888 55   99


Q ss_pred             EEEeCCCCCcEEEEecCCCeEEEEEcccCCc-ceeeecCCCcc--eEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCC
Q 019059          213 NVDYDTKKKHLLVTAADESGIHLWDLRMLKA-PIQELPGHTHW--TWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDE  289 (346)
Q Consensus       213 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~--v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~  289 (346)
                      +++|++++. ++++++.|+.|++||+.+... ++..+..+...  ++++.|+|++ .+|+++..|+.+++||++.     
T Consensus       293 ~~~f~~d~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~-~~ll~~~~d~~~~~w~l~~-----  365 (456)
T KOG0266|consen  293 GLAFSPDGN-LLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNG-KYLLSASLDRTLKLWDLRS-----  365 (456)
T ss_pred             EEEECCCCC-EEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCC-cEEEEecCCCeEEEEEccC-----
Confidence            999999998 899999999999999997332 35666666655  9999999999 9999999999999999998     


Q ss_pred             CCcccccCCccccccccccccccccce---eeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          290 LPSESLVESPNQRANSLLNSYSDYEDS---VYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                                    +..+..+.+|...   +.+...++.+. ++++++.|+.|++|++.
T Consensus       366 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~sg~~d~~v~~~~~~  409 (456)
T KOG0266|consen  366 --------------GKSVGTYTGHSNLVRCIFSPTLSTGGK-LIYSGSEDGSVYVWDSS  409 (456)
T ss_pred             --------------CcceeeecccCCcceeEecccccCCCC-eEEEEeCCceEEEEeCC
Confidence                          7888888888764   34445577786 89999999999999986

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=3e-33  Score=218.91  Aligned_cols=290  Identities=17%  Similarity=0.298  Sum_probs=239.4

Q ss_pred             ccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcc
Q 019059           12 LKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESY   91 (346)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~   91 (346)
                      ++.+..|+.++..+|...-|+.|+    .++.+.+|++....   ....+.+|-..|..+++|+-.++++++    +.|+
T Consensus       147 i~gHlgWVr~vavdP~n~wf~tgs----~DrtikIwDlatg~---LkltltGhi~~vr~vavS~rHpYlFs~----gedk  215 (460)
T KOG0285|consen  147 ISGHLGWVRSVAVDPGNEWFATGS----ADRTIKIWDLATGQ---LKLTLTGHIETVRGVAVSKRHPYLFSA----GEDK  215 (460)
T ss_pred             hhhccceEEEEeeCCCceeEEecC----CCceeEEEEcccCe---EEEeecchhheeeeeeecccCceEEEe----cCCC
Confidence            455678999999999999999884    68899999998853   335677899999999999999999996    7999


Q ss_pred             eEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceee
Q 019059           92 GAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYL  171 (346)
Q Consensus        92 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v  171 (346)
                      .|+-||++         ..+.++.+.+|-+.|.|++..|.-. .+++++.|..+++||+++.....     ...+|..+|
T Consensus       216 ~VKCwDLe---------~nkvIR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~~V~-----~l~GH~~~V  280 (460)
T KOG0285|consen  216 QVKCWDLE---------YNKVIRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRASVH-----VLSGHTNPV  280 (460)
T ss_pred             eeEEEech---------hhhhHHHhccccceeEEEeccccce-eEEecCCcceEEEeeecccceEE-----EecCCCCcc
Confidence            99999999         6788999999999999999999887 47778899999999999754332     235688899


Q ss_pred             EEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc--eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeec
Q 019059          172 SGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP  249 (346)
Q Consensus       172 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  249 (346)
                      ..+.+.|-+..+++++.|++|++||++.++...++....  +++++.+|... .|++++.| .|+-|++.. +..+..+.
T Consensus       281 ~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~-~fASas~d-nik~w~~p~-g~f~~nls  357 (460)
T KOG0285|consen  281 ASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKEN-LFASASPD-NIKQWKLPE-GEFLQNLS  357 (460)
T ss_pred             eeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchh-hhhccCCc-cceeccCCc-cchhhccc
Confidence            999999999999999999999999999999888877333  99999999986 89988886 799999987 55677799


Q ss_pred             CCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcE
Q 019059          250 GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWI  329 (346)
Q Consensus       250 ~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  329 (346)
                      +|..-|++++.+.|+  ++++|+++|.+.+||.+++........          ......+ .....|.+.+|...+. .
T Consensus       358 gh~~iintl~~nsD~--v~~~G~dng~~~fwdwksg~nyQ~~~t----------~vqpGSl-~sEagI~as~fDktg~-r  423 (460)
T KOG0285|consen  358 GHNAIINTLSVNSDG--VLVSGGDNGSIMFWDWKSGHNYQRGQT----------IVQPGSL-ESEAGIFASCFDKTGS-R  423 (460)
T ss_pred             cccceeeeeeeccCc--eEEEcCCceEEEEEecCcCcccccccc----------cccCCcc-ccccceeEEeecccCc-e
Confidence            999999999998886  889999999999999998322111000          0000011 1234689999999987 7


Q ss_pred             EEEeecCCeEEEeee
Q 019059          330 FASLSYDGRVRNHML  344 (346)
Q Consensus       330 l~s~~~d~~v~vw~~  344 (346)
                      |++|..|.+|++|.-
T Consensus       424 lit~eadKtIk~~ke  438 (460)
T KOG0285|consen  424 LITGEADKTIKMYKE  438 (460)
T ss_pred             EEeccCCcceEEEec
Confidence            899999999999963

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-33  Score=211.39  Aligned_cols=263  Identities=16%  Similarity=0.203  Sum_probs=214.8

Q ss_pred             eeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEE
Q 019059           60 GLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS  139 (346)
Q Consensus        60 ~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  139 (346)
                      .+.+|+.+++.+.++.+|..|+++    +.|.+..||-..         +++.+-++.+|++.|+|++.+-+.++ ++++
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFsc----aKD~~~~vw~s~---------nGerlGty~GHtGavW~~Did~~s~~-liTG   70 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSC----AKDSTPTVWYSL---------NGERLGTYDGHTGAVWCCDIDWDSKH-LITG   70 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEe----cCCCCceEEEec---------CCceeeeecCCCceEEEEEecCCcce-eeec
Confidence            456899999999999999999886    699999999876         68899999999999999999988885 8888


Q ss_pred             ecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec-----CCeEEEEEccC-------CCccceee
Q 019059          140 IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-----ESSVQFWDLRS-------MGKTNSIE  207 (346)
Q Consensus       140 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~i~d~~~-------~~~~~~~~  207 (346)
                      +.|.++++||+.++++........      +|..+.|++++..+++...     .+.|.++|++.       .++...+.
T Consensus        71 SAD~t~kLWDv~tGk~la~~k~~~------~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~  144 (327)
T KOG0643|consen   71 SADQTAKLWDVETGKQLATWKTNS------PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP  144 (327)
T ss_pred             cccceeEEEEcCCCcEEEEeecCC------eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec
Confidence            889999999999998766655433      8999999999988777654     47899999983       34455555


Q ss_pred             ccc--eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCC
Q 019059          208 HAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTS  285 (346)
Q Consensus       208 ~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~  285 (346)
                      ...  ++.+-|.|-++ .+++|.+||.|.+||+++....+..-+.|...|+.++++|+. .++++++.|.+-++||+++.
T Consensus       145 t~~skit~a~Wg~l~~-~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~-T~FiT~s~Dttakl~D~~tl  222 (327)
T KOG0643|consen  145 TPDSKITSALWGPLGE-TIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDR-TYFITGSKDTTAKLVDVRTL  222 (327)
T ss_pred             CCccceeeeeecccCC-EEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCc-ceEEecccCccceeeeccce
Confidence            333  99999999998 899999999999999998667777778899999999999999 99999999999999999876


Q ss_pred             CCCC-----CCcccccCCc----------------------cc---------cccccccccccccceeeEEEeCCCCCcE
Q 019059          286 NHDE-----LPSESLVESP----------------------NQ---------RANSLLNSYSDYEDSVYGLAWSSREPWI  329 (346)
Q Consensus       286 ~~~~-----~~~~~~~~~~----------------------~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~  329 (346)
                      ....     .+.......|                      ..         ...+.+..+++|-++|++++|+|+|+ .
T Consensus       223 ~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGk-s  301 (327)
T KOG0643|consen  223 EVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGK-S  301 (327)
T ss_pred             eeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCc-c
Confidence            3210     0000000000                      00         12244566789999999999999998 8


Q ss_pred             EEEeecCCeEEEeeec
Q 019059          330 FASLSYDGRVRNHMLE  345 (346)
Q Consensus       330 l~s~~~d~~v~vw~~~  345 (346)
                      .++|++||.||+...+
T Consensus       302 YsSGGEDG~VR~h~Fd  317 (327)
T KOG0643|consen  302 YSSGGEDGYVRLHHFD  317 (327)
T ss_pred             cccCCCCceEEEEEec
Confidence            9999999999998665

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=4e-34  Score=213.54  Aligned_cols=244  Identities=18%  Similarity=0.284  Sum_probs=210.5

Q ss_pred             EeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEE
Q 019059           58 CEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKL  137 (346)
Q Consensus        58 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  137 (346)
                      +-++.+|.+.|+......+....+++    ..|-+.+|||.-         ++..+.++ .|+..|.+++|+.|..+ ++
T Consensus        52 igtfeghkgavw~~~l~~na~~aasa----aadftakvw~a~---------tgdelhsf-~hkhivk~~af~~ds~~-ll  116 (334)
T KOG0278|consen   52 IGTFEGHKGAVWSATLNKNATRAASA----AADFTAKVWDAV---------TGDELHSF-EHKHIVKAVAFSQDSNY-LL  116 (334)
T ss_pred             EEeeeccCcceeeeecCchhhhhhhh----cccchhhhhhhh---------hhhhhhhh-hhhheeeeEEecccchh-hh
Confidence            46789999999999998866555553    689999999987         78888888 79999999999999986 88


Q ss_pred             EEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc-eeEEEe
Q 019059          138 VSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDY  216 (346)
Q Consensus       138 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~  216 (346)
                      +++.+..++|||++..+.    ...+..+|...|..+-|....+.+++++.|++||+||.++++.+..+...+ |+++..
T Consensus       117 tgg~ekllrvfdln~p~A----pp~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEv  192 (334)
T KOG0278|consen  117 TGGQEKLLRVFDLNRPKA----PPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEV  192 (334)
T ss_pred             ccchHHHhhhhhccCCCC----CchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceee
Confidence            888999999999985443    344456788899999999988999999999999999999999999998777 999999


Q ss_pred             CCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCccccc
Q 019059          217 DTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLV  296 (346)
Q Consensus       217 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  296 (346)
                      +++|+ + ++....+.|.+||..+.+ +++.+. -...|.+..++|+. ..+++|++|..++.||..+            
T Consensus       193 s~dG~-i-lTia~gssV~Fwdaksf~-~lKs~k-~P~nV~SASL~P~k-~~fVaGged~~~~kfDy~T------------  255 (334)
T KOG0278|consen  193 SQDGR-I-LTIAYGSSVKFWDAKSFG-LLKSYK-MPCNVESASLHPKK-EFFVAGGEDFKVYKFDYNT------------  255 (334)
T ss_pred             ccCCC-E-EEEecCceeEEecccccc-ceeecc-CccccccccccCCC-ceEEecCcceEEEEEeccC------------
Confidence            99997 4 444556799999999855 566665 35678899999999 9999999999999999999            


Q ss_pred             CCcccccccccccc-ccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          297 ESPNQRANSLLNSY-SDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       297 ~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                             ++.+..+ ++|.++|.++.|+|+|. +.++||+||+||+|...
T Consensus       256 -------geEi~~~nkgh~gpVhcVrFSPdGE-~yAsGSEDGTirlWQt~  297 (334)
T KOG0278|consen  256 -------GEEIGSYNKGHFGPVHCVRFSPDGE-LYASGSEDGTIRLWQTT  297 (334)
T ss_pred             -------CceeeecccCCCCceEEEEECCCCc-eeeccCCCceEEEEEec
Confidence                   7777775 89999999999999998 99999999999999763

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=100.00  E-value=4.2e-33  Score=227.70  Aligned_cols=302  Identities=17%  Similarity=0.288  Sum_probs=231.3

Q ss_pred             cccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEE-eeeec-cccceEEeeecCCCCceEEEEeecC
Q 019059           11 GLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELIC-EGLFS-HPNEIWDLSSCPFDQRIFSTVFSTG   88 (346)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~-h~~~v~~~~~~~~~~~l~~~~~~~~   88 (346)
                      .++..++.|+++..++.+.||+.|.    .++.+.+|+|......+.. +.+.. ....|++++|++.+..++++.    
T Consensus       162 ~l~hgtk~Vsal~~Dp~GaR~~sGs----~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvs----  233 (641)
T KOG0772|consen  162 QLKHGTKIVSALAVDPSGARFVSGS----LDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVS----  233 (641)
T ss_pred             eccCCceEEEEeeecCCCceeeecc----ccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEe----
Confidence            4555689999999999999999985    5789999999875432221 22222 225799999999999888873    


Q ss_pred             CcceEEEEecCccc-CCCCCcc--ceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeec-cc
Q 019059           89 ESYGAAIWQIPELY-GQLNSPQ--LERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK-QS  164 (346)
Q Consensus        89 ~d~~i~vw~~~~~~-~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~-~~  164 (346)
                      .....+|+|-+--. .+.....  ..-+...++|...++|.+|+|+.+..+++++.||++++||++..+...++... ..
T Consensus       234 g~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~  313 (641)
T KOG0772|consen  234 GSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA  313 (641)
T ss_pred             cCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccC
Confidence            44578888865100 0000000  01122346899999999999999999999999999999999876544444332 23


Q ss_pred             CCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCC--ccceeeccc-----eeEEEeCCCCCcEEEEecCCCeEEEEE
Q 019059          165 SGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG--KTNSIEHAH-----VRNVDYDTKKKHLLVTAADESGIHLWD  237 (346)
Q Consensus       165 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~-----v~~~~~~~~~~~~l~~~~~dg~i~i~d  237 (346)
                      .+..-.++.++|+|+++.+++++.||.|.+||.....  +...+..+|     |+||+|+++|+ .|++=+.|+++++||
T Consensus       314 ~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~-~LlSRg~D~tLKvWD  392 (641)
T KOG0772|consen  314 GGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN-YLLSRGFDDTLKVWD  392 (641)
T ss_pred             CCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccc-hhhhccCCCceeeee
Confidence            3445578999999999999999999999999986543  334444455     99999999998 899999999999999


Q ss_pred             cccCCcceeeecCCC--cceEEEEeCCCCCcEEEEecC------CCeEEEEecCCCCCCCCCcccccCCccccccccccc
Q 019059          238 LRMLKAPIQELPGHT--HWTWAVCCNPEYDGFILSAGT------DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNS  309 (346)
Q Consensus       238 ~~~~~~~~~~~~~~~--~~v~~v~~~~~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (346)
                      +|+.++++....+-.  .+-+.++|||+. ++|++|..      -|.+.+||..+                   .+.+..
T Consensus       393 Lrq~kkpL~~~tgL~t~~~~tdc~FSPd~-kli~TGtS~~~~~~~g~L~f~d~~t-------------------~d~v~k  452 (641)
T KOG0772|consen  393 LRQFKKPLNVRTGLPTPFPGTDCCFSPDD-KLILTGTSAPNGMTAGTLFFFDRMT-------------------LDTVYK  452 (641)
T ss_pred             ccccccchhhhcCCCccCCCCccccCCCc-eEEEecccccCCCCCceEEEEeccc-------------------eeeEEE
Confidence            999998888776543  455788999999 99999864      46899999998                   777777


Q ss_pred             cccccceeeEEEeCCCCCcEEEEeecCCeEEEe
Q 019059          310 YSDYEDSVYGLAWSSREPWIFASLSYDGRVRNH  342 (346)
Q Consensus       310 ~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw  342 (346)
                      +.-....|..+.|+|.-+ .+..++.||.+++|
T Consensus       453 i~i~~aSvv~~~WhpkLN-Qi~~gsgdG~~~vy  484 (641)
T KOG0772|consen  453 IDISTASVVRCLWHPKLN-QIFAGSGDGTAHVY  484 (641)
T ss_pred             ecCCCceEEEEeecchhh-heeeecCCCceEEE
Confidence            776677899999999876 67778889999876

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=6.2e-33  Score=235.54  Aligned_cols=264  Identities=20%  Similarity=0.330  Sum_probs=216.9

Q ss_pred             CCCeEEEEEecCCCCeEEEeeeeccccceEEeeec-CCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeec
Q 019059           40 EENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSC-PFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA  118 (346)
Q Consensus        40 ~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~  118 (346)
                      .++++.+++...   ....+.+.|..++|.+++|- |+.++|+++    .+.+.+++|++.         ...+ ..+.+
T Consensus       301 aeQnl~l~d~~~---l~i~k~ivG~ndEI~Dm~~lG~e~~~laVA----TNs~~lr~y~~~---------~~~c-~ii~G  363 (775)
T KOG0319|consen  301 AEQNLFLYDEDE---LTIVKQIVGYNDEILDMKFLGPEESHLAVA----TNSPELRLYTLP---------TSYC-QIIPG  363 (775)
T ss_pred             ccceEEEEEccc---cEEehhhcCCchhheeeeecCCccceEEEE----eCCCceEEEecC---------CCce-EEEeC
Confidence            466777774443   34557888999999999995 566777776    477899999887         2233 37889


Q ss_pred             cCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCC-cEEEEecCCeEEEEEc
Q 019059          119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDV-NAVAATCESSVQFWDL  197 (346)
Q Consensus       119 ~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~  197 (346)
                      |++.|.+++...+|. ++++++.|.++++|.++++. ..........+|...|.+++++..+. .+++++.|+++++|++
T Consensus       364 H~e~vlSL~~~~~g~-llat~sKD~svilWr~~~~~-~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l  441 (775)
T KOG0319|consen  364 HTEAVLSLDVWSSGD-LLATGSKDKSVILWRLNNNC-SKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDL  441 (775)
T ss_pred             chhheeeeeecccCc-EEEEecCCceEEEEEecCCc-chhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecC
Confidence            999999999666664 57777999999999995443 33344444578999999999976554 5778889999999999


Q ss_pred             cCCCcc---ce-----eeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCc
Q 019059          198 RSMGKT---NS-----IEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG  266 (346)
Q Consensus       198 ~~~~~~---~~-----~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~  266 (346)
                      ...+..   ..     ....|   |++++.+|++. +++||+.|++.++|++.+ .....++.+|+..|.+|.|+|.. +
T Consensus       442 ~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndk-LiAT~SqDktaKiW~le~-~~l~~vLsGH~RGvw~V~Fs~~d-q  518 (775)
T KOG0319|consen  442 PKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDK-LIATGSQDKTAKIWDLEQ-LRLLGVLSGHTRGVWCVSFSKND-Q  518 (775)
T ss_pred             CCcccccccceehhhHHHHhhcccccceEecCCCc-eEEecccccceeeecccC-ceEEEEeeCCccceEEEEecccc-c
Confidence            863211   11     12234   99999999998 999999999999999996 56889999999999999999999 9


Q ss_pred             EEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          267 FILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       267 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      .++|+|.|++|+||.+.+                   ..+++++.||+..|..+.|-.++. .|++++.||.+++|++.
T Consensus       519 ~laT~SgD~TvKIW~is~-------------------fSClkT~eGH~~aVlra~F~~~~~-qliS~~adGliKlWnik  577 (775)
T KOG0319|consen  519 LLATCSGDKTVKIWSIST-------------------FSCLKTFEGHTSAVLRASFIRNGK-QLISAGADGLIKLWNIK  577 (775)
T ss_pred             eeEeccCCceEEEEEecc-------------------ceeeeeecCccceeEeeeeeeCCc-EEEeccCCCcEEEEecc
Confidence            999999999999999999                   999999999999999999999997 89999999999999985

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.3e-32  Score=228.24  Aligned_cols=277  Identities=22%  Similarity=0.298  Sum_probs=233.7

Q ss_pred             eEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEE
Q 019059           17 RCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIW   96 (346)
Q Consensus        17 ~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw   96 (346)
                      ..+.++...|....++++-    .+|.+.+|++...   .+.+.+.-..-+|.+..|-+..+.+++    |+.|..|+||
T Consensus        14 dRVKsVd~HPtePw~la~L----ynG~V~IWnyetq---tmVksfeV~~~PvRa~kfiaRknWiv~----GsDD~~IrVf   82 (794)
T KOG0276|consen   14 DRVKSVDFHPTEPWILAAL----YNGDVQIWNYETQ---TMVKSFEVSEVPVRAAKFIARKNWIVT----GSDDMQIRVF   82 (794)
T ss_pred             CceeeeecCCCCceEEEee----ecCeeEEEecccc---eeeeeeeecccchhhheeeeccceEEE----ecCCceEEEE
Confidence            3466777888887777763    5789999988764   234555556679999999998888888    5799999999


Q ss_pred             ecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEe
Q 019059           97 QIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAW  176 (346)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~  176 (346)
                      ++.         +++.+..+..|.+-|++++.+|..++ ++++++|-.|++||.+..-    .......+|...|.+++|
T Consensus        83 nyn---------t~ekV~~FeAH~DyIR~iavHPt~P~-vLtsSDDm~iKlW~we~~w----a~~qtfeGH~HyVMqv~f  148 (794)
T KOG0276|consen   83 NYN---------TGEKVKTFEAHSDYIRSIAVHPTLPY-VLTSSDDMTIKLWDWENEW----ACEQTFEGHEHYVMQVAF  148 (794)
T ss_pred             ecc---------cceeeEEeeccccceeeeeecCCCCe-EEecCCccEEEEeeccCce----eeeeEEcCcceEEEEEEe
Confidence            998         89999999999999999999999996 8888999999999998543    233445688999999999


Q ss_pred             CCCC-CcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCC-cEEEEecCCCeEEEEEcccCCcceeeecCC
Q 019059          177 DPHD-VNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKK-HLLVTAADESGIHLWDLRMLKAPIQELPGH  251 (346)
Q Consensus       177 ~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  251 (346)
                      +|.+ +.+++++-|++|++|.+.+..+..++. +|   |+|+.|-+.|+ ..+++|++|.+|++||.++ +.+++++.+|
T Consensus       149 nPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~-gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt-k~CV~TLeGH  226 (794)
T KOG0276|consen  149 NPKDPNTFASASLDRTVKVWSLGSPHPNFTLE-GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT-KSCVQTLEGH  226 (794)
T ss_pred             cCCCccceeeeeccccEEEEEcCCCCCceeee-ccccCcceEEeccCCCcceEEecCCCceEEEeecch-HHHHHHhhcc
Confidence            9965 457788889999999999999999998 77   99999987652 2799999999999999998 7799999999


Q ss_pred             CcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEE
Q 019059          252 THWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFA  331 (346)
Q Consensus       252 ~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  331 (346)
                      ...|+.+.|+|.- ..+++|++||++|||+..+                   .++..++.-.-..|++++-.+.++ .++
T Consensus       227 t~Nvs~v~fhp~l-piiisgsEDGTvriWhs~T-------------------y~lE~tLn~gleRvW~I~~~k~~~-~i~  285 (794)
T KOG0276|consen  227 TNNVSFVFFHPEL-PIIISGSEDGTVRIWNSKT-------------------YKLEKTLNYGLERVWCIAAHKGDG-KIA  285 (794)
T ss_pred             cccceEEEecCCC-cEEEEecCCccEEEecCcc-------------------eehhhhhhcCCceEEEEeecCCCC-eEE
Confidence            9999999999999 8999999999999999998                   666677766667799999988776 678


Q ss_pred             EeecCCeEEE
Q 019059          332 SLSYDGRVRN  341 (346)
Q Consensus       332 s~~~d~~v~v  341 (346)
                      .|.++|.|.+
T Consensus       286 vG~Deg~i~v  295 (794)
T KOG0276|consen  286 VGFDEGSVTV  295 (794)
T ss_pred             EeccCCcEEE
Confidence            8877776643

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=5.5e-34  Score=222.40  Aligned_cols=260  Identities=16%  Similarity=0.284  Sum_probs=212.0

Q ss_pred             CCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeecc
Q 019059           40 EENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH  119 (346)
Q Consensus        40 ~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~  119 (346)
                      .++.|.+|+..+   ......+.+|.+.|.|+.|..  +.+++    |++|.+|+|||+.         +++++.++-.|
T Consensus       215 rDnTikiWD~n~---~~c~~~L~GHtGSVLCLqyd~--rviis----GSSDsTvrvWDv~---------tge~l~tlihH  276 (499)
T KOG0281|consen  215 RDNTIKIWDKNS---LECLKILTGHTGSVLCLQYDE--RVIVS----GSSDSTVRVWDVN---------TGEPLNTLIHH  276 (499)
T ss_pred             ccCceEEecccc---HHHHHhhhcCCCcEEeeeccc--eEEEe----cCCCceEEEEecc---------CCchhhHHhhh
Confidence            567777775554   234567889999999999964  34444    6899999999999         88999999999


Q ss_pred             CCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccC
Q 019059          120 VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRS  199 (346)
Q Consensus       120 ~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~  199 (346)
                      .+.|..+.|+..   .+++++.|.++.+||+....  ......-..+|...|+.+.|+  .+++++++.|.+|++|++.+
T Consensus       277 ceaVLhlrf~ng---~mvtcSkDrsiaVWdm~sps--~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st  349 (499)
T KOG0281|consen  277 CEAVLHLRFSNG---YMVTCSKDRSIAVWDMASPT--DITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTST  349 (499)
T ss_pred             cceeEEEEEeCC---EEEEecCCceeEEEeccCch--HHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccc
Confidence            999999999853   47888999999999998654  223333456788899999996  56999999999999999999


Q ss_pred             CCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCe
Q 019059          200 MGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDST  276 (346)
Q Consensus       200 ~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~  276 (346)
                      ++.++++. +|   |.|+.+.  ++ ++++|+.|.+|++||+.. +.+++.+++|+.-|.++.|..   +.+++|+.||+
T Consensus       350 ~efvRtl~-gHkRGIAClQYr--~r-lvVSGSSDntIRlwdi~~-G~cLRvLeGHEeLvRciRFd~---krIVSGaYDGk  421 (499)
T KOG0281|consen  350 CEFVRTLN-GHKRGIACLQYR--DR-LVVSGSSDNTIRLWDIEC-GACLRVLEGHEELVRCIRFDN---KRIVSGAYDGK  421 (499)
T ss_pred             eeeehhhh-cccccceehhcc--Ce-EEEecCCCceEEEEeccc-cHHHHHHhchHHhhhheeecC---ceeeeccccce
Confidence            99999987 77   7777664  44 899999999999999997 779999999999999999976   67999999999


Q ss_pred             EEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          277 VNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       277 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      |+|||+..+......          ...-++..+..|++.|..+.|..   ..+++++.|.+|.|||..
T Consensus       422 ikvWdl~aaldpra~----------~~~~Cl~~lv~hsgRVFrLQFD~---fqIvsssHddtILiWdFl  477 (499)
T KOG0281|consen  422 IKVWDLQAALDPRAP----------ASTLCLRTLVEHSGRVFRLQFDE---FQIISSSHDDTILIWDFL  477 (499)
T ss_pred             EEEEecccccCCccc----------ccchHHHhhhhccceeEEEeecc---eEEEeccCCCeEEEEEcC
Confidence            999999973211110          01235677778999999999965   478999999999999964

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1e-32  Score=238.62  Aligned_cols=279  Identities=19%  Similarity=0.354  Sum_probs=232.4

Q ss_pred             EeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEe
Q 019059           18 CISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQ   97 (346)
Q Consensus        18 ~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~   97 (346)
                      .+..+++.|....++++    -+.+.|.+|++--..   ....+.+|.++|..++|+|+.+.+++    ||.|..|+||+
T Consensus        11 RvKglsFHP~rPwILts----lHsG~IQlWDYRM~t---li~rFdeHdGpVRgv~FH~~qplFVS----GGDDykIkVWn   79 (1202)
T KOG0292|consen   11 RVKGLSFHPKRPWILTS----LHSGVIQLWDYRMGT---LIDRFDEHDGPVRGVDFHPTQPLFVS----GGDDYKIKVWN   79 (1202)
T ss_pred             cccceecCCCCCEEEEe----ecCceeeeehhhhhh---HHhhhhccCCccceeeecCCCCeEEe----cCCccEEEEEe
Confidence            45667788888777776    467889999876532   44778899999999999999988887    58999999999


Q ss_pred             cCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeC
Q 019059           98 IPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWD  177 (346)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~  177 (346)
                      +.         +.+++.++.+|-+-|..+.|++.-++ ++++++|.+|+||+..+.+....+     .+|...|.+.+|+
T Consensus        80 Yk---------~rrclftL~GHlDYVRt~~FHheyPW-IlSASDDQTIrIWNwqsr~~iavl-----tGHnHYVMcAqFh  144 (1202)
T KOG0292|consen   80 YK---------TRRCLFTLLGHLDYVRTVFFHHEYPW-ILSASDDQTIRIWNWQSRKCIAVL-----TGHNHYVMCAQFH  144 (1202)
T ss_pred             cc---------cceehhhhccccceeEEeeccCCCce-EEEccCCCeEEEEeccCCceEEEE-----ecCceEEEeeccC
Confidence            98         78999999999999999999999996 777789999999999976654333     4688899999999


Q ss_pred             CCCCcEEEEecCCeEEEEEccCCC----------------------------ccceeeccc---eeEEEeCCCCCcEEEE
Q 019059          178 PHDVNAVAATCESSVQFWDLRSMG----------------------------KTNSIEHAH---VRNVDYDTKKKHLLVT  226 (346)
Q Consensus       178 ~~~~~l~~~~~d~~i~i~d~~~~~----------------------------~~~~~~~~~---v~~~~~~~~~~~~l~~  226 (346)
                      |....+++++-|.+|++||+..-+                            .++.+-.+|   |+-++|+|.-+ ++++
T Consensus       145 ptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVS  223 (1202)
T KOG0292|consen  145 PTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVS  223 (1202)
T ss_pred             CccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-eEEe
Confidence            999999999999999999986311                            012222456   99999999998 9999


Q ss_pred             ecCCCeEEEEEcccCCc-ceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccc
Q 019059          227 AADESGIHLWDLRMLKA-PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANS  305 (346)
Q Consensus       227 ~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  305 (346)
                      |++|..|++|.+...+. .+.+..+|.+.|+++-|+|.. .++++.|+|++|+|||+..                   ..
T Consensus       224 G~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q-~lIlSnsEDksirVwDm~k-------------------Rt  283 (1202)
T KOG0292|consen  224 GADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQ-DLILSNSEDKSIRVWDMTK-------------------RT  283 (1202)
T ss_pred             cCCcceeeEEEeccccceeehhhhcccCCcceEEecCcc-ceeEecCCCccEEEEeccc-------------------cc
Confidence            99999999999875332 456678999999999999999 9999999999999999998                   78


Q ss_pred             cccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          306 LLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       306 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      .++++....+..+.++-+|..+ +++ ++.|+-+.||.++
T Consensus       284 ~v~tfrrendRFW~laahP~lN-LfA-AgHDsGm~VFkle  321 (1202)
T KOG0292|consen  284 SVQTFRRENDRFWILAAHPELN-LFA-AGHDSGMIVFKLE  321 (1202)
T ss_pred             ceeeeeccCCeEEEEEecCCcc-eee-eecCCceEEEEEc
Confidence            8888877667789999999987 555 4556667777664

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=9.7e-32  Score=222.93  Aligned_cols=243  Identities=23%  Similarity=0.378  Sum_probs=205.7

Q ss_pred             eeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEE
Q 019059           60 GLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS  139 (346)
Q Consensus        60 ~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  139 (346)
                      .+.+|.++|.+++|+|+++.++++    +.++.+.+|++.         ..+....+..|...+..+.|+|+++. ++++
T Consensus         4 ~~~~h~~~i~~~~~~~~~~~l~~~----~~~g~i~i~~~~---------~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~   69 (289)
T cd00200           4 TLKGHTGGVTCVAFSPDGKLLATG----SGDGTIKVWDLE---------TGELLRTLKGHTGPVRDVAASADGTY-LASG   69 (289)
T ss_pred             HhcccCCCEEEEEEcCCCCEEEEe----ecCcEEEEEEee---------CCCcEEEEecCCcceeEEEECCCCCE-EEEE
Confidence            455899999999999998888875    579999999998         45566777889999999999999964 6777


Q ss_pred             ecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEe
Q 019059          140 IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDY  216 (346)
Q Consensus       140 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~  216 (346)
                      +.++.|++|++.+++....+.     .|...+.++.|+|++..+++++.++.|++||+++++....+. .+   +.+++|
T Consensus        70 ~~~~~i~i~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~i~~~~~  143 (289)
T cd00200          70 SSDKTIRLWDLETGECVRTLT-----GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR-GHTDWVNSVAF  143 (289)
T ss_pred             cCCCeEEEEEcCcccceEEEe-----ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec-cCCCcEEEEEE
Confidence            779999999998754333332     345589999999997777777779999999999887777666 33   999999


Q ss_pred             CCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCccccc
Q 019059          217 DTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLV  296 (346)
Q Consensus       217 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  296 (346)
                      +|++. ++++++.++.|++||++. ..++..+..|...+.++.|+|++ ..+++++.|+.|++||++.            
T Consensus       144 ~~~~~-~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~------------  208 (289)
T cd00200         144 SPDGT-FVASSSQDGTIKLWDLRT-GKCVATLTGHTGEVNSVAFSPDG-EKLLSSSSDGTIKLWDLST------------  208 (289)
T ss_pred             cCcCC-EEEEEcCCCcEEEEEccc-cccceeEecCccccceEEECCCc-CEEEEecCCCcEEEEECCC------------
Confidence            99977 788888799999999986 55777888898999999999999 8899999899999999997            


Q ss_pred             CCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          297 ESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                             ++.+..+..|...+.++.|+|++. ++++++.|+.|++|++.
T Consensus       209 -------~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~i~~~~  249 (289)
T cd00200         209 -------GKCLGTLRGHENGVNSVAFSPDGY-LLASGSEDGTIRVWDLR  249 (289)
T ss_pred             -------CceecchhhcCCceEEEEEcCCCc-EEEEEcCCCcEEEEEcC
Confidence                   777788878888999999999975 88888889999999985

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=6.8e-32  Score=252.21  Aligned_cols=256  Identities=16%  Similarity=0.162  Sum_probs=201.8

Q ss_pred             eeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEe
Q 019059           61 LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI  140 (346)
Q Consensus        61 ~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  140 (346)
                      +..|.+.|.+++|+|++..++++    +.|+.|+||++........ ....+...+ .+...+.+++|++.....+++++
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latg----g~D~~I~iwd~~~~~~~~~-~~~~~~~~~-~~~~~v~~l~~~~~~~~~las~~  552 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATA----GVNKKIKIFECESIIKDGR-DIHYPVVEL-ASRSKLSGICWNSYIKSQVASSN  552 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEE----eCCCEEEEEECCccccccc-ccccceEEe-cccCceeeEEeccCCCCEEEEEe
Confidence            45689999999999999888775    7999999999762110000 001122333 34568999999986554577778


Q ss_pred             cCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCC-CCCcEEEEecCCeEEEEEccCCCccceeeccc-eeEEEeCC
Q 019059          141 DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDP-HDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDT  218 (346)
Q Consensus       141 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~  218 (346)
                      .|+.|++||+.+++....     ..+|...|.+++|+| ++..|++++.|+.|++||++++.....+.... +.++.|++
T Consensus       553 ~Dg~v~lWd~~~~~~~~~-----~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~  627 (793)
T PLN00181        553 FEGVVQVWDVARSQLVTE-----MKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPS  627 (793)
T ss_pred             CCCeEEEEECCCCeEEEE-----ecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeC
Confidence            899999999986543222     245777999999997 67889999999999999999988877776333 99999965


Q ss_pred             -CCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccC
Q 019059          219 -KKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVE  297 (346)
Q Consensus       219 -~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  297 (346)
                       ++. .+++|+.|+.|++||+++...++..+.+|...|.++.|. ++ .+|++++.|++|++||++.....         
T Consensus       628 ~~g~-~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~-~~lvs~s~D~~ikiWd~~~~~~~---------  695 (793)
T PLN00181        628 ESGR-SLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DS-STLVSSSTDNTLKLWDLSMSISG---------  695 (793)
T ss_pred             CCCC-EEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CC-CEEEEEECCCEEEEEeCCCCccc---------
Confidence             565 899999999999999997555677888999999999997 56 78999999999999999851100         


Q ss_pred             CccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059          298 SPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~  344 (346)
                          ....++..+.+|...+..++|+|+++ +|++|+.|+.|++|+.
T Consensus       696 ----~~~~~l~~~~gh~~~i~~v~~s~~~~-~lasgs~D~~v~iw~~  737 (793)
T PLN00181        696 ----INETPLHSFMGHTNVKNFVGLSVSDG-YIATGSETNEVFVYHK  737 (793)
T ss_pred             ----cCCcceEEEcCCCCCeeEEEEcCCCC-EEEEEeCCCEEEEEEC
Confidence                01356778889999999999999997 9999999999999985

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=3e-31  Score=200.30  Aligned_cols=247  Identities=18%  Similarity=0.342  Sum_probs=199.3

Q ss_pred             EEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeee-eccCCceEEEEeecCCCC
Q 019059           56 LICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL-DAHVGKINCVLWWSSGRH  134 (346)
Q Consensus        56 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~  134 (346)
                      +....+.+|++.++.++|+|-...++++   +|.|+.|++|+...      .....+...+ .+|+..|++++|+|.|++
T Consensus         5 ~~~~~~~gh~~r~W~~awhp~~g~ilAs---cg~Dk~vriw~~~~------~~s~~ck~vld~~hkrsVRsvAwsp~g~~   75 (312)
T KOG0645|consen    5 ILEQKLSGHKDRVWSVAWHPGKGVILAS---CGTDKAVRIWSTSS------GDSWTCKTVLDDGHKRSVRSVAWSPHGRY   75 (312)
T ss_pred             eeEEeecCCCCcEEEEEeccCCceEEEe---ecCCceEEEEecCC------CCcEEEEEeccccchheeeeeeecCCCcE
Confidence            4557778999999999999973345554   48999999999872      1134444444 478999999999999994


Q ss_pred             cEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCc---cceeeccc-
Q 019059          135 DKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGK---TNSIEHAH-  210 (346)
Q Consensus       135 ~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~-  210 (346)
                       +++++.|.++.||.-..+.-.  . .....+|...|.+++|+++|.+|++++.|..|-||.+..+..   ...++ +| 
T Consensus        76 -La~aSFD~t~~Iw~k~~~efe--c-v~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~-~Ht  150 (312)
T KOG0645|consen   76 -LASASFDATVVIWKKEDGEFE--C-VATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQ-EHT  150 (312)
T ss_pred             -EEEeeccceEEEeecCCCcee--E-EeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeec-ccc
Confidence             677788999999987644321  1 233567899999999999999999999999999999986543   33333 56 


Q ss_pred             --eeEEEeCCCCCcEEEEecCCCeEEEEEccc--CCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCC
Q 019059          211 --VRNVDYDTKKKHLLVTAADESGIHLWDLRM--LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSN  286 (346)
Q Consensus       211 --v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~  286 (346)
                        |..+.|+|... +|++++.|.+|++|+-..  .-.++.++.+|...|.+++|+|.| ..|++++.|++++||...+  
T Consensus       151 qDVK~V~WHPt~d-lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G-~rl~s~sdD~tv~Iw~~~~--  226 (312)
T KOG0645|consen  151 QDVKHVIWHPTED-LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIG-SRLVSCSDDGTVSIWRLYT--  226 (312)
T ss_pred             ccccEEEEcCCcc-eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCC-ceEEEecCCcceEeeeecc--
Confidence              99999999888 999999999999998652  124788999999999999999999 9999999999999998665  


Q ss_pred             CCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059          287 HDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~  344 (346)
                                       .-    -..|+..++.+.|. ++  .|++++.|+.|++|.-
T Consensus       227 -----------------~~----~~~~sr~~Y~v~W~-~~--~IaS~ggD~~i~lf~~  260 (312)
T KOG0645|consen  227 -----------------DL----SGMHSRALYDVPWD-NG--VIASGGGDDAIRLFKE  260 (312)
T ss_pred             -----------------Cc----chhcccceEeeeec-cc--ceEeccCCCEEEEEEe
Confidence                             11    12367789999999 44  7999999999999864

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=3.3e-33  Score=226.49  Aligned_cols=249  Identities=12%  Similarity=0.238  Sum_probs=206.7

Q ss_pred             EeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEE
Q 019059           58 CEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKL  137 (346)
Q Consensus        58 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  137 (346)
                      ...+.+|...|.++.|.|...+|+..   +|.|+.|+||++..        ...+++++.+|..+|.+++|+++|.. ++
T Consensus       207 ~~~~~gH~kgvsai~~fp~~~hLlLS---~gmD~~vklW~vy~--------~~~~lrtf~gH~k~Vrd~~~s~~g~~-fL  274 (503)
T KOG0282|consen  207 SHNLSGHTKGVSAIQWFPKKGHLLLS---GGMDGLVKLWNVYD--------DRRCLRTFKGHRKPVRDASFNNCGTS-FL  274 (503)
T ss_pred             eeeccCCccccchhhhccceeeEEEe---cCCCceEEEEEEec--------CcceehhhhcchhhhhhhhccccCCe-ee
Confidence            36788999999999999966666665   59999999999973        58999999999999999999999996 88


Q ss_pred             EEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCC-CcEEEEecCCeEEEEEccCCCccceeeccc---eeE
Q 019059          138 VSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD-VNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRN  213 (346)
Q Consensus       138 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~  213 (346)
                      +++.|+.|++||.++++....+....      .++++.|+|++ +.+++|+.|+.|+.||+++++.+..+. .|   |..
T Consensus       275 S~sfD~~lKlwDtETG~~~~~f~~~~------~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd-~hLg~i~~  347 (503)
T KOG0282|consen  275 SASFDRFLKLWDTETGQVLSRFHLDK------VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD-RHLGAILD  347 (503)
T ss_pred             eeecceeeeeeccccceEEEEEecCC------CceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH-hhhhheee
Confidence            88899999999999998766665433      78999999999 557777889999999999999888776 44   999


Q ss_pred             EEeCCCCCcEEEEecCCCeEEEEEcccCCcceeee-cCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCc
Q 019059          214 VDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL-PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPS  292 (346)
Q Consensus       214 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  292 (346)
                      +.|-+++. .+++.++|+.+++|+.+.+- ++... ..+.....++..+|++ .++++-+.|+.|.++.+...       
T Consensus       348 i~F~~~g~-rFissSDdks~riWe~~~~v-~ik~i~~~~~hsmP~~~~~P~~-~~~~aQs~dN~i~ifs~~~~-------  417 (503)
T KOG0282|consen  348 ITFVDEGR-RFISSSDDKSVRIWENRIPV-PIKNIADPEMHTMPCLTLHPNG-KWFAAQSMDNYIAIFSTVPP-------  417 (503)
T ss_pred             eEEccCCc-eEeeeccCccEEEEEcCCCc-cchhhcchhhccCcceecCCCC-CeehhhccCceEEEEecccc-------
Confidence            99999998 89999999999999998733 33332 2334566789999999 99999999999999987641       


Q ss_pred             ccccCCcccccccccccccccc--ceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          293 ESLVESPNQRANSLLNSYSDYE--DSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                               -.......+.+|.  +.-..+.|||||. +|++|+.||.+.+||..
T Consensus       418 ---------~r~nkkK~feGh~vaGys~~v~fSpDG~-~l~SGdsdG~v~~wdwk  462 (503)
T KOG0282|consen  418 ---------FRLNKKKRFEGHSVAGYSCQVDFSPDGR-TLCSGDSDGKVNFWDWK  462 (503)
T ss_pred             ---------cccCHhhhhcceeccCceeeEEEcCCCC-eEEeecCCccEEEeech
Confidence                     0123345566775  3457799999997 99999999999999853

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=3.2e-33  Score=218.19  Aligned_cols=228  Identities=19%  Similarity=0.345  Sum_probs=194.7

Q ss_pred             cccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCC
Q 019059           64 HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEE  143 (346)
Q Consensus        64 h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~  143 (346)
                      ....|.|+++.  +..+++    |..|.+|+|||..         ...+++.+.+|++.|.|+.|...   ++++|+.|.
T Consensus       196 ~skgVYClQYD--D~kiVS----GlrDnTikiWD~n---------~~~c~~~L~GHtGSVLCLqyd~r---viisGSSDs  257 (499)
T KOG0281|consen  196 NSKGVYCLQYD--DEKIVS----GLRDNTIKIWDKN---------SLECLKILTGHTGSVLCLQYDER---VIVSGSSDS  257 (499)
T ss_pred             cCCceEEEEec--chhhhc----ccccCceEEeccc---------cHHHHHhhhcCCCcEEeeeccce---EEEecCCCc
Confidence            34678999885  556766    5799999999988         78899999999999999999643   577888899


Q ss_pred             eEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCcc--ceeeccc---eeEEEeCC
Q 019059          144 NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKT--NSIEHAH---VRNVDYDT  218 (346)
Q Consensus       144 ~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~---v~~~~~~~  218 (346)
                      +|++||.++++....+.     .|...|..+.|+  ..++++++.|.++.+||+......  +..-.+|   |+.+.|+.
T Consensus       258 TvrvWDv~tge~l~tli-----hHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~  330 (499)
T KOG0281|consen  258 TVRVWDVNTGEPLNTLI-----HHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD  330 (499)
T ss_pred             eEEEEeccCCchhhHHh-----hhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc
Confidence            99999999988665554     366789999997  478999999999999999977632  2222366   99999964


Q ss_pred             CCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCC
Q 019059          219 KKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVES  298 (346)
Q Consensus       219 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~  298 (346)
                        + ++++++.|.+|++|++.+ ...++++.+|...|.|+.+  .+ +++++|+.|.+|++||+..              
T Consensus       331 --k-yIVsASgDRTikvW~~st-~efvRtl~gHkRGIAClQY--r~-rlvVSGSSDntIRlwdi~~--------------  389 (499)
T KOG0281|consen  331 --K-YIVSASGDRTIKVWSTST-CEFVRTLNGHKRGIACLQY--RD-RLVVSGSSDNTIRLWDIEC--------------  389 (499)
T ss_pred             --c-eEEEecCCceEEEEeccc-eeeehhhhcccccceehhc--cC-eEEEecCCCceEEEEeccc--------------
Confidence              3 899999999999999998 6689999999999999876  45 8999999999999999999              


Q ss_pred             ccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          299 PNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                           +.++..+.||..-|.++.|..  + .+++|+.||+|++||+.
T Consensus       390 -----G~cLRvLeGHEeLvRciRFd~--k-rIVSGaYDGkikvWdl~  428 (499)
T KOG0281|consen  390 -----GACLRVLEGHEELVRCIRFDN--K-RIVSGAYDGKIKVWDLQ  428 (499)
T ss_pred             -----cHHHHHHhchHHhhhheeecC--c-eeeeccccceEEEEecc
Confidence                 999999999999999999974  3 68999999999999985

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=4.5e-32  Score=203.73  Aligned_cols=247  Identities=15%  Similarity=0.245  Sum_probs=210.9

Q ss_pred             eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEE
Q 019059           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV  138 (346)
Q Consensus        59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  138 (346)
                      +.+.+|...|.+++|+-+|..|++    |+.|+++.+|+++.       .....-...++|.+.|-.++|+|....++++
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~las----gs~dktv~v~n~e~-------~r~~~~~~~~gh~~svdql~w~~~~~d~~at   82 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLAS----GSFDKTVSVWNLER-------DRFRKELVYRGHTDSVDQLCWDPKHPDLFAT   82 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeee----cccCCceEEEEecc-------hhhhhhhcccCCCcchhhheeCCCCCcceEE
Confidence            556789999999999999999998    47999999999982       1122223457899999999999998888888


Q ss_pred             EecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc-eeEEEeC
Q 019059          139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYD  217 (346)
Q Consensus       139 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~  217 (346)
                      ++.|..|++||++.++....+....      .-.-+.|+|+|.+++++..|..|.+.|.++.+.+...+... +..++|+
T Consensus        83 as~dk~ir~wd~r~~k~~~~i~~~~------eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~  156 (313)
T KOG1407|consen   83 ASGDKTIRIWDIRSGKCTARIETKG------ENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWN  156 (313)
T ss_pred             ecCCceEEEEEeccCcEEEEeeccC------cceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeec
Confidence            8889999999999887666655433      44567899999999999999999999999988777666444 9999999


Q ss_pred             CCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccC
Q 019059          218 TKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVE  297 (346)
Q Consensus       218 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  297 (346)
                      -++. +++.....|.|.|..... -+++..++.|.....||.|+|+| ++||+|+.|..+.+||+..             
T Consensus       157 ~~nd-~Fflt~GlG~v~ILsyps-Lkpv~si~AH~snCicI~f~p~G-ryfA~GsADAlvSLWD~~E-------------  220 (313)
T KOG1407|consen  157 NSND-LFFLTNGLGCVEILSYPS-LKPVQSIKAHPSNCICIEFDPDG-RYFATGSADALVSLWDVDE-------------  220 (313)
T ss_pred             CCCC-EEEEecCCceEEEEeccc-cccccccccCCcceEEEEECCCC-ceEeeccccceeeccChhH-------------
Confidence            7776 666666679999999887 44899999999999999999999 9999999999999999998             


Q ss_pred             CccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          298 SPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                            --++..+..+.=+|+.+.|+-+|+ +||++|+|..|-|-+++
T Consensus       221 ------LiC~R~isRldwpVRTlSFS~dg~-~lASaSEDh~IDIA~ve  261 (313)
T KOG1407|consen  221 ------LICERCISRLDWPVRTLSFSHDGR-MLASASEDHFIDIAEVE  261 (313)
T ss_pred             ------hhhheeeccccCceEEEEeccCcc-eeeccCccceEEeEecc
Confidence                  788888888888999999999997 99999999998776553

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.5e-30  Score=213.25  Aligned_cols=288  Identities=16%  Similarity=0.229  Sum_probs=235.8

Q ss_pred             ccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcc
Q 019059           12 LKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESY   91 (346)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~   91 (346)
                      ++.-+.+|.++.++.++.|+++..-  +.++..+++- |+.++  ..-.+.+|...|+++.|-|..++-+++   +++|+
T Consensus        99 f~v~aG~I~Di~Wd~ds~RI~avGE--Grerfg~~F~-~DSG~--SvGei~GhSr~ins~~~KpsRPfRi~T---~sdDn  170 (603)
T KOG0318|consen   99 FQVLAGPIKDISWDFDSKRIAAVGE--GRERFGHVFL-WDSGN--SVGEITGHSRRINSVDFKPSRPFRIAT---GSDDN  170 (603)
T ss_pred             eeecccccccceeCCCCcEEEEEec--CccceeEEEE-ecCCC--ccceeeccceeEeeeeccCCCceEEEe---ccCCC
Confidence            3344568889999999999987532  2333222222 23222  225567999999999999999988877   59999


Q ss_pred             eEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceee
Q 019059           92 GAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYL  171 (346)
Q Consensus        92 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v  171 (346)
                      .|.+|+=+         +.+...+++.|..-|.|+.|+|||.. +++.+.||.|.+||=.+++....+..  ..+|...|
T Consensus       171 ~v~ffeGP---------PFKFk~s~r~HskFV~~VRysPDG~~-Fat~gsDgki~iyDGktge~vg~l~~--~~aHkGsI  238 (603)
T KOG0318|consen  171 TVAFFEGP---------PFKFKSSFREHSKFVNCVRYSPDGSR-FATAGSDGKIYIYDGKTGEKVGELED--SDAHKGSI  238 (603)
T ss_pred             eEEEeeCC---------CeeeeecccccccceeeEEECCCCCe-EEEecCCccEEEEcCCCccEEEEecC--CCCccccE
Confidence            99999966         78888899999999999999999994 66668899999999988876665543  45788899


Q ss_pred             EEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc-----eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCccee
Q 019059          172 SGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-----VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQ  246 (346)
Q Consensus       172 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-----v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  246 (346)
                      ++++|+||+..+++++.|.+++|||..+.+++.++..+.     .-.+-|- .+  .|++.+.+|.|.+++..... +++
T Consensus       239 falsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq-kd--~lItVSl~G~in~ln~~d~~-~~~  314 (603)
T KOG0318|consen  239 FALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ-KD--HLITVSLSGTINYLNPSDPS-VLK  314 (603)
T ss_pred             EEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe-CC--eEEEEEcCcEEEEecccCCC-hhh
Confidence            999999999999999999999999999999888887544     3444555 33  68888999999999999855 899


Q ss_pred             eecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccc-ccccceeeEEEeCCC
Q 019059          247 ELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSY-SDYEDSVYGLAWSSR  325 (346)
Q Consensus       247 ~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~  325 (346)
                      .+.+|...|+++..+|++ .+|++|+.||.|.-|+..+                   +..-... .+|...|.+++-+..
T Consensus       315 ~i~GHnK~ITaLtv~~d~-~~i~SgsyDG~I~~W~~~~-------------------g~~~~~~g~~h~nqI~~~~~~~~  374 (603)
T KOG0318|consen  315 VISGHNKSITALTVSPDG-KTIYSGSYDGHINSWDSGS-------------------GTSDRLAGKGHTNQIKGMAASES  374 (603)
T ss_pred             eecccccceeEEEEcCCC-CEEEeeccCceEEEEecCC-------------------ccccccccccccceEEEEeecCC
Confidence            999999999999999999 9999999999999999998                   4443322 679999999999886


Q ss_pred             CCcEEEEeecCCeEEEeeec
Q 019059          326 EPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       326 ~~~~l~s~~~d~~v~vw~~~  345 (346)
                      +.  +++++.|.++++.++.
T Consensus       375 ~~--~~t~g~Dd~l~~~~~~  392 (603)
T KOG0318|consen  375 GE--LFTIGWDDTLRVISLK  392 (603)
T ss_pred             Cc--EEEEecCCeEEEEecc
Confidence            64  7899999999998764

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.3e-31  Score=231.17  Aligned_cols=251  Identities=16%  Similarity=0.203  Sum_probs=200.2

Q ss_pred             eee-ccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcc----------------------------cC-------
Q 019059           60 GLF-SHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPEL----------------------------YG-------  103 (346)
Q Consensus        60 ~~~-~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~----------------------------~~-------  103 (346)
                      .+. .|.+.|+++.||++|++|+++    |.|+.|+||.+-+.                            ..       
T Consensus       261 e~~~ah~gaIw~mKFS~DGKyLAsa----GeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~  336 (712)
T KOG0283|consen  261 EISNAHKGAIWAMKFSHDGKYLASA----GEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT  336 (712)
T ss_pred             ccccccCCcEEEEEeCCCCceeeec----CCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence            344 799999999999999999995    89999999998750                            00       


Q ss_pred             -----C-----------CCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCC
Q 019059          104 -----Q-----------LNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGM  167 (346)
Q Consensus       104 -----~-----------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~  167 (346)
                           .           ......++++.+.+|.+.|..+.|+.++-  |++++.|.+|++|++....+...+.      |
T Consensus       337 s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~f--LLSSSMDKTVRLWh~~~~~CL~~F~------H  408 (712)
T KOG0283|consen  337 SSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNF--LLSSSMDKTVRLWHPGRKECLKVFS------H  408 (712)
T ss_pred             cccccccCCccccCCCccccccccchhhhhccchhheecccccCCe--eEeccccccEEeecCCCcceeeEEe------c
Confidence                 0           00112355677889999999999998764  8888999999999998665443332      6


Q ss_pred             ceeeEEEEeCC-CCCcEEEEecCCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcce
Q 019059          168 LHYLSGGAWDP-HDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPI  245 (346)
Q Consensus       168 ~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  245 (346)
                      ...|++++|+| |.+++++|+-|+.|+||++...+.+.-..... |++++|.|+|+ ..++|+.+|.+++|+.+..+ ..
T Consensus       409 ndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk-~avIGt~~G~C~fY~t~~lk-~~  486 (712)
T KOG0283|consen  409 NDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGK-GAVIGTFNGYCRFYDTEGLK-LV  486 (712)
T ss_pred             CCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCc-eEEEEEeccEEEEEEccCCe-EE
Confidence            77999999999 67889999999999999999776654443223 99999999998 88999999999999988633 33


Q ss_pred             eeec---------CCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccc-
Q 019059          246 QELP---------GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYED-  315 (346)
Q Consensus       246 ~~~~---------~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  315 (346)
                      ..+.         .|. .|+.+.|.|..+..+++.+.|..|||||.+.                   ..++..++++.. 
T Consensus       487 ~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~-------------------~~lv~KfKG~~n~  546 (712)
T KOG0283|consen  487 SDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRD-------------------KDLVHKFKGFRNT  546 (712)
T ss_pred             EeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccc-------------------hhhhhhhcccccC
Confidence            2221         123 7999999998866688888899999999987                   788888887543 


Q ss_pred             -eeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          316 -SVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       316 -~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                       .-....|+.+|+ .|+++++|..|++|+++
T Consensus       547 ~SQ~~Asfs~Dgk-~IVs~seDs~VYiW~~~  576 (712)
T KOG0283|consen  547 SSQISASFSSDGK-HIVSASEDSWVYIWKND  576 (712)
T ss_pred             CcceeeeEccCCC-EEEEeecCceEEEEeCC
Confidence             235678999998 89999999999999974

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.8e-31  Score=222.38  Aligned_cols=259  Identities=17%  Similarity=0.232  Sum_probs=215.4

Q ss_pred             CCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeec-
Q 019059           40 EENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA-  118 (346)
Q Consensus        40 ~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~-  118 (346)
                      ....+++|+-....-...   ..-+.+.|+++.|+++|.+|+++    -.+|.|.|||..         +.+.+..+.. 
T Consensus       195 lg~~vylW~~~s~~v~~l---~~~~~~~vtSv~ws~~G~~LavG----~~~g~v~iwD~~---------~~k~~~~~~~~  258 (484)
T KOG0305|consen  195 LGQSVYLWSASSGSVTEL---CSFGEELVTSVKWSPDGSHLAVG----TSDGTVQIWDVK---------EQKKTRTLRGS  258 (484)
T ss_pred             ecceEEEEecCCCceEEe---EecCCCceEEEEECCCCCEEEEe----ecCCeEEEEehh---------hccccccccCC
Confidence            445788888776541111   11238899999999999999996    489999999998         6677778888 


Q ss_pred             cCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEcc
Q 019059          119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLR  198 (346)
Q Consensus       119 ~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~  198 (346)
                      |...|-+++|+..   .+.+++.++.|..+|++..+....    ...+|...|..++|++++.++++++.|+.+.|||..
T Consensus       259 h~~rvg~laW~~~---~lssGsr~~~I~~~dvR~~~~~~~----~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~  331 (484)
T KOG0305|consen  259 HASRVGSLAWNSS---VLSSGSRDGKILNHDVRISQHVVS----TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGL  331 (484)
T ss_pred             cCceeEEEeccCc---eEEEecCCCcEEEEEEecchhhhh----hhhcccceeeeeEECCCCCeeccCCCccceEeccCC
Confidence            9999999999832   467778899999999997665444    245688899999999999999999999999999998


Q ss_pred             CCCccceeeccc---eeEEEeCCCCCcEEEEec--CCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEe-c
Q 019059          199 SMGKTNSIEHAH---VRNVDYDTKKKHLLVTAA--DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSA-G  272 (346)
Q Consensus       199 ~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~-~  272 (346)
                      ...++..+. +|   |..++|+|-...+||+|+  .|+.|++||..+ +..+..+. ....|.+|.|++...+++.+- -
T Consensus       332 ~~~p~~~~~-~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~-g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~  408 (484)
T KOG0305|consen  332 SPEPKFTFT-EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNT-GARIDSVD-TGSQVCSLIWSKKYKELLSTHGY  408 (484)
T ss_pred             CccccEEEe-ccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCC-CcEecccc-cCCceeeEEEcCCCCEEEEecCC
Confidence            777777776 56   999999999888999865  689999999997 55566554 468899999999984444443 3


Q ss_pred             CCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059          273 TDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       273 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~  344 (346)
                      .++.|.||+..+                   .+++..+.+|...|..++++|+|. .+++++.|.++++|++
T Consensus       409 s~n~i~lw~~ps-------------------~~~~~~l~gH~~RVl~la~SPdg~-~i~t~a~DETlrfw~~  460 (484)
T KOG0305|consen  409 SENQITLWKYPS-------------------MKLVAELLGHTSRVLYLALSPDGE-TIVTGAADETLRFWNL  460 (484)
T ss_pred             CCCcEEEEeccc-------------------cceeeeecCCcceeEEEEECCCCC-EEEEecccCcEEeccc
Confidence            477999999998                   788999999999999999999997 8999999999999987

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.6e-31  Score=225.39  Aligned_cols=263  Identities=14%  Similarity=0.195  Sum_probs=221.1

Q ss_pred             CCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeecc
Q 019059           40 EENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH  119 (346)
Q Consensus        40 ~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~  119 (346)
                      ..+.+.+|+.....   .++++ . .+.+.+..|.|.+++++.+    ...|.+.++|+.         ....+.++++|
T Consensus       392 a~~SikiWn~~t~k---ciRTi-~-~~y~l~~~Fvpgd~~Iv~G----~k~Gel~vfdla---------S~~l~Eti~AH  453 (888)
T KOG0306|consen  392 AGESIKIWNRDTLK---CIRTI-T-CGYILASKFVPGDRYIVLG----TKNGELQVFDLA---------SASLVETIRAH  453 (888)
T ss_pred             CCCcEEEEEccCcc---eeEEe-c-cccEEEEEecCCCceEEEe----ccCCceEEEEee---------hhhhhhhhhcc
Confidence            45677777766532   12222 2 2378899999988888884    688999999998         67788888899


Q ss_pred             CCceEEEEeecCCCCcEEEEecCCeEEEEEcCCC-----CCCc--eeeecccCCCceeeEEEEeCCCCCcEEEEecCCeE
Q 019059          120 VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCS-----NKNA--QVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSV  192 (346)
Q Consensus       120 ~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~-----~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  192 (346)
                      ++.|..++.+||++. +++++.|.+|++||..--     .+..  .+.....-.....+.+++++||+++|+++--|.++
T Consensus       454 dgaIWsi~~~pD~~g-~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTV  532 (888)
T KOG0306|consen  454 DGAIWSISLSPDNKG-FVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTV  532 (888)
T ss_pred             ccceeeeeecCCCCc-eEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeE
Confidence            999999999999997 788888999999997521     1111  01000111224489999999999999999999999


Q ss_pred             EEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEE
Q 019059          193 QFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFIL  269 (346)
Q Consensus       193 ~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~  269 (346)
                      ++|-+.+.+-...+. +|   |.|+..+||+. +++||+.|+.|++|-+.- +.+-+.+.+|...|.++.|.|.. .++.
T Consensus       533 kVyflDtlKFflsLY-GHkLPV~smDIS~DSk-livTgSADKnVKiWGLdF-GDCHKS~fAHdDSvm~V~F~P~~-~~FF  608 (888)
T KOG0306|consen  533 KVYFLDTLKFFLSLY-GHKLPVLSMDISPDSK-LIVTGSADKNVKIWGLDF-GDCHKSFFAHDDSVMSVQFLPKT-HLFF  608 (888)
T ss_pred             EEEEecceeeeeeec-ccccceeEEeccCCcC-eEEeccCCCceEEecccc-chhhhhhhcccCceeEEEEcccc-eeEE
Confidence            999999999888887 77   99999999998 999999999999999885 66888999999999999999988 9999


Q ss_pred             EecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          270 SAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       270 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      ++|.|+.|+-||-..                   .+.++.+.+|...|++++.+|+|. +++++|.|.+||+|.-+
T Consensus       609 t~gKD~kvKqWDg~k-------------------Fe~iq~L~~H~~ev~cLav~~~G~-~vvs~shD~sIRlwE~t  664 (888)
T KOG0306|consen  609 TCGKDGKVKQWDGEK-------------------FEEIQKLDGHHSEVWCLAVSPNGS-FVVSSSHDKSIRLWERT  664 (888)
T ss_pred             EecCcceEEeechhh-------------------hhhheeeccchheeeeeEEcCCCC-eEEeccCCceeEeeecc
Confidence            999999999999998                   899999999999999999999997 99999999999999753

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=100.00  E-value=4.5e-31  Score=208.00  Aligned_cols=281  Identities=19%  Similarity=0.344  Sum_probs=211.5

Q ss_pred             eEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCC-------CCCccceeeeeeeccCCceEEEE
Q 019059           55 ELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQ-------LNSPQLERIAALDAHVGKINCVL  127 (346)
Q Consensus        55 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~-------~~~~~~~~~~~~~~~~~~i~~~~  127 (346)
                      +........|.+.++.+.-++.++..++++  -+..|.|+||++......       ......+++.++.+|...=++++
T Consensus       141 P~~~~~~i~h~g~~NRvr~~~~~~~~~~as--wse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~Ld  218 (440)
T KOG0302|consen  141 PQIEMKSIPHYGGINRVRVSRLGNEVLCAS--WSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLD  218 (440)
T ss_pred             ccccccccccccccceeeecccCCcceeee--ecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeee
Confidence            333455678999999999999876555554  367899999999754222       12235678889999999999999


Q ss_pred             eecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCc-EEEEecCCeEEEEEccCCCccce-
Q 019059          128 WWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVN-AVAATCESSVQFWDLRSMGKTNS-  205 (346)
Q Consensus       128 ~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~-  205 (346)
                      |||-...-++++---+.|++|...++  ...+......+|...|..++|+|.... +++++.|++|+|||+|.+..... 
T Consensus       219 WSp~~~g~LlsGDc~~~I~lw~~~~g--~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~  296 (440)
T KOG0302|consen  219 WSPIKTGRLLSGDCVKGIHLWEPSTG--SWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV  296 (440)
T ss_pred             cccccccccccCccccceEeeeeccC--ceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcccee
Confidence            99955443555533689999999874  355555566779999999999997665 55666799999999998843322 


Q ss_pred             eeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccC--CcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEE
Q 019059          206 IEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRML--KAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLW  280 (346)
Q Consensus       206 ~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iw  280 (346)
                      +...|   |+-|.|+..-+ +|++|+.||+++|||+|+.  ++|+..|+-|..+|++|.|+|.....|++++.|.+|.||
T Consensus       297 ~~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiW  375 (440)
T KOG0302|consen  297 STKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIW  375 (440)
T ss_pred             EeeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEE
Confidence            22355   99999999988 9999999999999999964  468889999999999999999887899999999999999


Q ss_pred             ecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEE
Q 019059          281 LVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRN  341 (346)
Q Consensus       281 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~v  341 (346)
                      |+..-..++.........-.....++++..++.. .+..+.|+++-+.++++.+.||.-.+
T Consensus       376 DlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQk-e~KevhWH~QiPG~lvsTa~dGfnVf  435 (440)
T KOG0302|consen  376 DLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQK-EVKEVHWHRQIPGLLVSTAIDGFNVF  435 (440)
T ss_pred             EeeccCChhhhccccccchhcCCceeEEEecchh-HhhhheeccCCCCeEEEecccceeEE
Confidence            9987433222221111111122345566555543 48999999998889999999995433

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=1.8e-30  Score=195.14  Aligned_cols=279  Identities=16%  Similarity=0.213  Sum_probs=228.2

Q ss_pred             eEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEE
Q 019059           17 RCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIW   96 (346)
Q Consensus        17 ~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw   96 (346)
                      ..+.++.++-++.+++.|.    .+..+.+|.+... .........+|.+.|-.++|+|..+.+++++   +.|.+|++|
T Consensus        21 ~~v~Sv~wn~~g~~lasgs----~dktv~v~n~e~~-r~~~~~~~~gh~~svdql~w~~~~~d~~ata---s~dk~ir~w   92 (313)
T KOG1407|consen   21 QKVHSVAWNCDGTKLASGS----FDKTVSVWNLERD-RFRKELVYRGHTDSVDQLCWDPKHPDLFATA---SGDKTIRIW   92 (313)
T ss_pred             hcceEEEEcccCceeeecc----cCCceEEEEecch-hhhhhhcccCCCcchhhheeCCCCCcceEEe---cCCceEEEE
Confidence            3455666777899999885    4678889988886 4445566789999999999999888777764   788899999


Q ss_pred             ecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEe
Q 019059           97 QIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAW  176 (346)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~  176 (346)
                      |+.         ..++...+....+. .-+.|+|+|.+ ++++..|..|...|.++.+.......      ...+..+.|
T Consensus        93 d~r---------~~k~~~~i~~~~en-i~i~wsp~g~~-~~~~~kdD~it~id~r~~~~~~~~~~------~~e~ne~~w  155 (313)
T KOG1407|consen   93 DIR---------SGKCTARIETKGEN-INITWSPDGEY-IAVGNKDDRITFIDARTYKIVNEEQF------KFEVNEISW  155 (313)
T ss_pred             Eec---------cCcEEEEeeccCcc-eEEEEcCCCCE-EEEecCcccEEEEEecccceeehhcc------cceeeeeee
Confidence            999         78888877554444 46789999997 77778899999999986553333322      237888999


Q ss_pred             CCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCc
Q 019059          177 DPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTH  253 (346)
Q Consensus       177 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  253 (346)
                      +-++..++.....|.|.|.....-+++..+. +|   +.||+|+|+|+ .|++|+.|-.+.+||+.. -.+++.+..+.-
T Consensus       156 ~~~nd~Fflt~GlG~v~ILsypsLkpv~si~-AH~snCicI~f~p~Gr-yfA~GsADAlvSLWD~~E-LiC~R~isRldw  232 (313)
T KOG1407|consen  156 NNSNDLFFLTNGLGCVEILSYPSLKPVQSIK-AHPSNCICIEFDPDGR-YFATGSADALVSLWDVDE-LICERCISRLDW  232 (313)
T ss_pred             cCCCCEEEEecCCceEEEEeccccccccccc-cCCcceEEEEECCCCc-eEeeccccceeeccChhH-hhhheeeccccC
Confidence            9777777777778999999999999999888 66   88999999999 899999999999999987 447888999999


Q ss_pred             ceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEe
Q 019059          254 WTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASL  333 (346)
Q Consensus       254 ~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  333 (346)
                      +|..+.|+.+| ++||++|+|..|-|=++++                   +..+..++ +.++...++|+|... +||-+
T Consensus       233 pVRTlSFS~dg-~~lASaSEDh~IDIA~vet-------------------Gd~~~eI~-~~~~t~tVAWHPk~~-LLAyA  290 (313)
T KOG1407|consen  233 PVRTLSFSHDG-RMLASASEDHFIDIAEVET-------------------GDRVWEIP-CEGPTFTVAWHPKRP-LLAYA  290 (313)
T ss_pred             ceEEEEeccCc-ceeeccCccceEEeEeccc-------------------CCeEEEee-ccCCceeEEecCCCc-eeeEE
Confidence            99999999999 9999999999999999998                   78777775 567789999999886 77776


Q ss_pred             ecC---------CeEEEeeec
Q 019059          334 SYD---------GRVRNHMLE  345 (346)
Q Consensus       334 ~~d---------~~v~vw~~~  345 (346)
                      ..|         |.|++|-+.
T Consensus       291 ~ddk~~d~~reag~vKiFG~~  311 (313)
T KOG1407|consen  291 CDDKDGDSNREAGTVKIFGLS  311 (313)
T ss_pred             ecCCCCccccccceeEEecCC
Confidence            654         567887653

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=1.7e-32  Score=218.25  Aligned_cols=259  Identities=17%  Similarity=0.252  Sum_probs=214.7

Q ss_pred             CCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeec
Q 019059           39 KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA  118 (346)
Q Consensus        39 ~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~  118 (346)
                      +.+..|.+|+....+. -....+.+..+.|+++.|.+++.+++++    +.|+.+++|+++         ..+...++.+
T Consensus       194 g~Dr~Ik~W~v~~~k~-~~~~tLaGs~g~it~~d~d~~~~~~iAa----s~d~~~r~Wnvd---------~~r~~~TLsG  259 (459)
T KOG0288|consen  194 GSDRIIKLWNVLGEKS-ELISTLAGSLGNITSIDFDSDNKHVIAA----SNDKNLRLWNVD---------SLRLRHTLSG  259 (459)
T ss_pred             chhhhhhhhhcccchh-hhhhhhhccCCCcceeeecCCCceEEee----cCCCceeeeecc---------chhhhhhhcc
Confidence            4677888888887653 3346777888999999999999999986    799999999999         7899999999


Q ss_pred             cCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEcc
Q 019059          119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLR  198 (346)
Q Consensus       119 ~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~  198 (346)
                      |++.|+++.|...... ++.++.|.+|++||+........+....      .+..+..+  ...++++..|++|++||.+
T Consensus       260 HtdkVt~ak~~~~~~~-vVsgs~DRtiK~WDl~k~~C~kt~l~~S------~cnDI~~~--~~~~~SgH~DkkvRfwD~R  330 (459)
T KOG0288|consen  260 HTDKVTAAKFKLSHSR-VVSGSADRTIKLWDLQKAYCSKTVLPGS------QCNDIVCS--ISDVISGHFDKKVRFWDIR  330 (459)
T ss_pred             cccceeeehhhccccc-eeeccccchhhhhhhhhhheeccccccc------cccceEec--ceeeeecccccceEEEecc
Confidence            9999999999887765 7777889999999999766555554432      56666665  3557777789999999999


Q ss_pred             CCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCC----CcceEEEEeCCCCCcEEEEecC
Q 019059          199 SMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGH----THWTWAVCCNPEYDGFILSAGT  273 (346)
Q Consensus       199 ~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~v~~v~~~~~~~~~l~s~~~  273 (346)
                      +..+...+..+. |+++..++++. -+.+.+.|.++.+.|++. ......+...    ....+.+.|||++ .|+++||.
T Consensus       331 s~~~~~sv~~gg~vtSl~ls~~g~-~lLsssRDdtl~viDlRt-~eI~~~~sA~g~k~asDwtrvvfSpd~-~YvaAGS~  407 (459)
T KOG0288|consen  331 SADKTRSVPLGGRVTSLDLSMDGL-ELLSSSRDDTLKVIDLRT-KEIRQTFSAEGFKCASDWTRVVFSPDG-SYVAAGSA  407 (459)
T ss_pred             CCceeeEeecCcceeeEeeccCCe-EEeeecCCCceeeeeccc-ccEEEEeeccccccccccceeEECCCC-ceeeeccC
Confidence            999999888555 99999999998 677779999999999997 4455555431    2347889999999 99999999


Q ss_pred             CCeEEEEecCCCCCCCCCcccccCCccccccccccccccccc--eeeEEEeCCCCCcEEEEeecCCeEEEee
Q 019059          274 DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYED--SVYGLAWSSREPWIFASLSYDGRVRNHM  343 (346)
Q Consensus       274 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~d~~v~vw~  343 (346)
                      ||.|+||++.+                   +++.+.+.....  .|++++|+|.|. .|++++.++.+.+|.
T Consensus       408 dgsv~iW~v~t-------------------gKlE~~l~~s~s~~aI~s~~W~~sG~-~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  408 DGSVYIWSVFT-------------------GKLEKVLSLSTSNAAITSLSWNPSGS-GLLSADKQKAVTLWT  459 (459)
T ss_pred             CCcEEEEEccC-------------------ceEEEEeccCCCCcceEEEEEcCCCc-hhhcccCCcceEecC
Confidence            99999999998                   787777765444  499999999997 788999999999994

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.3e-30  Score=191.90  Aligned_cols=275  Identities=14%  Similarity=0.193  Sum_probs=215.3

Q ss_pred             eEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEE
Q 019059           17 RCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIW   96 (346)
Q Consensus        17 ~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw   96 (346)
                      .++..+..+.++.-.+.    .+.+..+.+|+-   .....+++..+|..+|.+++.+.|+..+++    +|.|..+.+|
T Consensus        18 gaV~avryN~dGnY~lt----cGsdrtvrLWNp---~rg~liktYsghG~EVlD~~~s~Dnskf~s----~GgDk~v~vw   86 (307)
T KOG0316|consen   18 GAVRAVRYNVDGNYCLT----CGSDRTVRLWNP---LRGALIKTYSGHGHEVLDAALSSDNSKFAS----CGGDKAVQVW   86 (307)
T ss_pred             cceEEEEEccCCCEEEE----cCCCceEEeecc---cccceeeeecCCCceeeecccccccccccc----CCCCceEEEE
Confidence            34445555555544332    346667766643   334566889999999999999999999888    4899999999


Q ss_pred             ecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEe
Q 019059           97 QIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAW  176 (346)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~  176 (346)
                      |+.         +++..+.+.+|.+.|+.++|+.+.. ++++++.|..+++||.++...........   ....|.++..
T Consensus        87 DV~---------TGkv~Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQilde---a~D~V~Si~v  153 (307)
T KOG0316|consen   87 DVN---------TGKVDRRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQILDE---AKDGVSSIDV  153 (307)
T ss_pred             Ecc---------cCeeeeecccccceeeEEEecCcce-EEEeccccceeEEEEcccCCCCccchhhh---hcCceeEEEe
Confidence            999         8999999999999999999998887 46666889999999998654322222222   3447888887


Q ss_pred             CCCCCcEEEEecCCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcce
Q 019059          177 DPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWT  255 (346)
Q Consensus       177 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v  255 (346)
                      +  +..+++|+.||+++.||++.|+...... ++ |+++.|+++++ ..+.++-|+++++.|-.+ ++.+..+++|.+.-
T Consensus       154 ~--~heIvaGS~DGtvRtydiR~G~l~sDy~-g~pit~vs~s~d~n-c~La~~l~stlrLlDk~t-GklL~sYkGhkn~e  228 (307)
T KOG0316|consen  154 A--EHEIVAGSVDGTVRTYDIRKGTLSSDYF-GHPITSVSFSKDGN-CSLASSLDSTLRLLDKET-GKLLKSYKGHKNME  228 (307)
T ss_pred             c--ccEEEeeccCCcEEEEEeecceeehhhc-CCcceeEEecCCCC-EEEEeeccceeeecccch-hHHHHHhcccccce
Confidence            5  4678899999999999999998776665 66 99999999998 788889999999999887 66889999998765


Q ss_pred             EE--EEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccce-eeEEEeCCCCCcEEEE
Q 019059          256 WA--VCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDS-VYGLAWSSREPWIFAS  332 (346)
Q Consensus       256 ~~--v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~s  332 (346)
                      ..  .+++... ..+++|++||.|.+||+..                   ...+..+..+... |.+++++|.-..++ +
T Consensus       229 ykldc~l~qsd-thV~sgSEDG~Vy~wdLvd-------------------~~~~sk~~~~~~v~v~dl~~hp~~~~f~-~  287 (307)
T KOG0316|consen  229 YKLDCCLNQSD-THVFSGSEDGKVYFWDLVD-------------------ETQISKLSVVSTVIVTDLSCHPTMDDFI-T  287 (307)
T ss_pred             eeeeeeecccc-eeEEeccCCceEEEEEecc-------------------ceeeeeeccCCceeEEeeecccCcccee-E
Confidence            43  3455555 8999999999999999998                   7888888888877 89999999876444 4


Q ss_pred             eecCCeEEEe
Q 019059          333 LSYDGRVRNH  342 (346)
Q Consensus       333 ~~~d~~v~vw  342 (346)
                      +. ++.+..|
T Consensus       288 A~-~~~~~~~  296 (307)
T KOG0316|consen  288 AT-GHGDLFW  296 (307)
T ss_pred             ec-CCceece
Confidence            43 3445555

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=8.2e-30  Score=222.73  Aligned_cols=229  Identities=16%  Similarity=0.177  Sum_probs=164.5

Q ss_pred             eEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCc
Q 019059           43 EVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGK  122 (346)
Q Consensus        43 ~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (346)
                      .+.++.++..........+.+|.+.|.+++|+|+...++++   ++.|+.|+||++....... .....++..+.+|...
T Consensus        52 ~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLAS---gS~DgtIrIWDi~t~~~~~-~~i~~p~~~L~gH~~~  127 (568)
T PTZ00420         52 LIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILAS---GSEDLTIRVWEIPHNDESV-KEIKDPQCILKGHKKK  127 (568)
T ss_pred             ceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEE---EeCCCeEEEEECCCCCccc-cccccceEEeecCCCc
Confidence            34444444433333456778999999999999974444444   4799999999997311000 0011345567899999


Q ss_pred             eEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCc
Q 019059          123 INCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGK  202 (346)
Q Consensus       123 i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  202 (346)
                      |.+++|+|++..++++++.|+.|++||+.+++....+.      +...+.+++|+|+|..+++++.|+.|++||+++++.
T Consensus       128 V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~------~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~  201 (568)
T PTZ00420        128 ISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN------MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEI  201 (568)
T ss_pred             EEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe------cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcE
Confidence            99999999998756677889999999999765433221      234799999999999999999999999999999988


Q ss_pred             cceeeccc---e-----eEEEeCCCCCcEEEEecCC----CeEEEEEcccCCcceeeecCC--CcceEEEEeCCCCCcEE
Q 019059          203 TNSIEHAH---V-----RNVDYDTKKKHLLVTAADE----SGIHLWDLRMLKAPIQELPGH--THWTWAVCCNPEYDGFI  268 (346)
Q Consensus       203 ~~~~~~~~---v-----~~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~--~~~v~~v~~~~~~~~~l  268 (346)
                      +..+. +|   +     ....|++++. .+++++.|    +.|++||+++...++..+..+  .+.+......+++ .++
T Consensus       202 i~tl~-gH~g~~~s~~v~~~~fs~d~~-~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg-~l~  278 (568)
T PTZ00420        202 ASSFH-IHDGGKNTKNIWIDGLGGDDN-YILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTG-LIY  278 (568)
T ss_pred             EEEEe-cccCCceeEEEEeeeEcCCCC-EEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCC-CEE
Confidence            77765 44   2     2334568887 66666655    379999999766677665432  2333333334556 899


Q ss_pred             EEecCCCeEEEEecCC
Q 019059          269 LSAGTDSTVNLWLVST  284 (346)
Q Consensus       269 ~s~~~d~~i~iwd~~~  284 (346)
                      ++|+.|+.|++|++..
T Consensus       279 lsGkGD~tIr~~e~~~  294 (568)
T PTZ00420        279 LIGKGDGNCRYYQHSL  294 (568)
T ss_pred             EEEECCCeEEEEEccC
Confidence            9999999999999986

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=3.9e-31  Score=203.60  Aligned_cols=280  Identities=19%  Similarity=0.199  Sum_probs=209.8

Q ss_pred             CCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcc------cC---CCCCccceeeeeeeccCCc
Q 019059           52 GGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPEL------YG---QLNSPQLERIAALDAHVGK  122 (346)
Q Consensus        52 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~------~~---~~~~~~~~~~~~~~~~~~~  122 (346)
                      +........+..|+.++.+.+|+|||..+++    |+.|..|+|.|++..      .+   .........++++..|.++
T Consensus        99 e~~~yEt~ylt~HK~~cR~aafs~DG~lvAT----GsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~de  174 (430)
T KOG0640|consen   99 EPSEYETKYLTSHKSPCRAAAFSPDGSLVAT----GSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDE  174 (430)
T ss_pred             CCcccceEEEeecccceeeeeeCCCCcEEEc----cCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCc
Confidence            3344455677889999999999999987766    689999999999722      10   1111123567889999999


Q ss_pred             eEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCc
Q 019059          123 INCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGK  202 (346)
Q Consensus       123 i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  202 (346)
                      |+++.|+|... ++++++.|+.|++||+.+...........   ...+|.++.|+|.|.++++|.....+++||+++-++
T Consensus       175 vn~l~FHPre~-ILiS~srD~tvKlFDfsK~saKrA~K~~q---d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qc  250 (430)
T KOG0640|consen  175 VNDLDFHPRET-ILISGSRDNTVKLFDFSKTSAKRAFKVFQ---DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQC  250 (430)
T ss_pred             ccceeecchhh-eEEeccCCCeEEEEecccHHHHHHHHHhh---ccceeeeEeecCCCceEEEecCCCceeEEeccceeE
Confidence            99999999988 57777899999999997543211111111   233899999999999999999999999999999987


Q ss_pred             cceeec--cc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeec-CCC-cceEEEEeCCCCCcEEEEecCCC
Q 019059          203 TNSIEH--AH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP-GHT-HWTWAVCCNPEYDGFILSAGTDS  275 (346)
Q Consensus       203 ~~~~~~--~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~-~~v~~v~~~~~~~~~l~s~~~d~  275 (346)
                      ...-.+  +|   |+++.+++.++ +.++++.||.|++||--+ .+++.++. .|. ..|.+..|..++ +++++.+.|.
T Consensus       251 fvsanPd~qht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS-~rCv~t~~~AH~gsevcSa~Ftkn~-kyiLsSG~DS  327 (430)
T KOG0640|consen  251 FVSANPDDQHTGAITQVRYSSTGS-LYVTASKDGAIKLWDGVS-NRCVRTIGNAHGGSEVCSAVFTKNG-KYILSSGKDS  327 (430)
T ss_pred             eeecCcccccccceeEEEecCCcc-EEEEeccCCcEEeecccc-HHHHHHHHhhcCCceeeeEEEccCC-eEEeecCCcc
Confidence            655442  23   99999999998 999999999999999776 55777775 354 578999999999 9999999999


Q ss_pred             eEEEEecCCCCCCCC-------------------Cccc----------ccCCcccccccc-ccccccccceeeEEEeCCC
Q 019059          276 TVNLWLVSTSNHDEL-------------------PSES----------LVESPNQRANSL-LNSYSDYEDSVYGLAWSSR  325 (346)
Q Consensus       276 ~i~iwd~~~~~~~~~-------------------~~~~----------~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~  325 (346)
                      .+++|.+.++..-..                   ..+.          ..-.+....... ...-.+|.+.++.+.-+|.
T Consensus       328 ~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~  407 (430)
T KOG0640|consen  328 TVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPV  407 (430)
T ss_pred             eeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCC
Confidence            999999987521000                   0000          000001111111 1122479999999999999


Q ss_pred             CCcEEEEeecCCeEEEee
Q 019059          326 EPWIFASLSYDGRVRNHM  343 (346)
Q Consensus       326 ~~~~l~s~~~d~~v~vw~  343 (346)
                      ++ -+.+|+.|.++|+|-
T Consensus       408 ~p-~FmTcsdD~raRFWy  424 (430)
T KOG0640|consen  408 EP-AFMTCSDDFRARFWY  424 (430)
T ss_pred             CC-ceeeecccceeeeee
Confidence            98 899999999999994

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.5e-31  Score=209.61  Aligned_cols=280  Identities=16%  Similarity=0.220  Sum_probs=218.4

Q ss_pred             cccceeeEeeeccCCCCc-ceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCC
Q 019059           11 GLKYQARCISDVKADTDH-TSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGE   89 (346)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~   89 (346)
                      .|..+...+..+..+|.. ..++.|    +.+|++.+|++..-+   ....+..|.+.|..|++..  ..++++    |+
T Consensus        61 ~L~gHrdGV~~lakhp~~ls~~aSG----s~DG~VkiWnlsqR~---~~~~f~AH~G~V~Gi~v~~--~~~~tv----gd  127 (433)
T KOG0268|consen   61 SLDGHRDGVSCLAKHPNKLSTVASG----SCDGEVKIWNLSQRE---CIRTFKAHEGLVRGICVTQ--TSFFTV----GD  127 (433)
T ss_pred             hccccccccchhhcCcchhhhhhcc----ccCceEEEEehhhhh---hhheeecccCceeeEEecc--cceEEe----cC
Confidence            344444556666666655 344444    468999999998743   4567788999999999987  556664    79


Q ss_pred             cceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCce
Q 019059           90 SYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLH  169 (346)
Q Consensus        90 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~  169 (346)
                      |.+|+.|.++          +.+++++ ..++.+..++-+..+. .++++|  ..|.|||.........+....     .
T Consensus       128 DKtvK~wk~~----------~~p~~ti-lg~s~~~gIdh~~~~~-~FaTcG--e~i~IWD~~R~~Pv~smswG~-----D  188 (433)
T KOG0268|consen  128 DKTVKQWKID----------GPPLHTI-LGKSVYLGIDHHRKNS-VFATCG--EQIDIWDEQRDNPVSSMSWGA-----D  188 (433)
T ss_pred             Ccceeeeecc----------CCcceee-eccccccccccccccc-cccccC--ceeeecccccCCccceeecCC-----C
Confidence            9999999987          3466666 3356677777766665 244444  589999998766555555433     2


Q ss_pred             eeEEEEeCCCCCcEEEEe-cCCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceee
Q 019059          170 YLSGGAWDPHDVNAVAAT-CESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQE  247 (346)
Q Consensus       170 ~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  247 (346)
                      .+.++.|+|....+++++ .|+.|.+||+++.+++..+...- -+.|+|+|+.- .|++|++|..++.||+|....++..
T Consensus       189 ti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeaf-nF~~a~ED~nlY~~DmR~l~~p~~v  267 (433)
T KOG0268|consen  189 SISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAF-NFVAANEDHNLYTYDMRNLSRPLNV  267 (433)
T ss_pred             ceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCcccc-ceeeccccccceehhhhhhcccchh
Confidence            789999999877665555 89999999999999988877555 89999999664 8999999999999999999999999


Q ss_pred             ecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccc-cccceeeEEEeCCCC
Q 019059          248 LPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYS-DYEDSVYGLAWSSRE  326 (346)
Q Consensus       248 ~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~  326 (346)
                      +.+|.+.|.++.|||.| .-|++||.|.+|+||..+.                   +.....+. ..-..|.++.||.|.
T Consensus       268 ~~dhvsAV~dVdfsptG-~EfvsgsyDksIRIf~~~~-------------------~~SRdiYhtkRMq~V~~Vk~S~Ds  327 (433)
T KOG0268|consen  268 HKDHVSAVMDVDFSPTG-QEFVSGSYDKSIRIFPVNH-------------------GHSRDIYHTKRMQHVFCVKYSMDS  327 (433)
T ss_pred             hcccceeEEEeccCCCc-chhccccccceEEEeecCC-------------------CcchhhhhHhhhheeeEEEEeccc
Confidence            99999999999999999 9999999999999999987                   32222111 112349999999999


Q ss_pred             CcEEEEeecCCeEEEeee
Q 019059          327 PWIFASLSYDGRVRNHML  344 (346)
Q Consensus       327 ~~~l~s~~~d~~v~vw~~  344 (346)
                      + ++++||.|+.||+|.-
T Consensus       328 k-yi~SGSdd~nvRlWka  344 (433)
T KOG0268|consen  328 K-YIISGSDDGNVRLWKA  344 (433)
T ss_pred             c-EEEecCCCcceeeeec
Confidence            7 9999999999999963

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=3.2e-30  Score=228.15  Aligned_cols=300  Identities=16%  Similarity=0.219  Sum_probs=231.2

Q ss_pred             ccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCC---------CeEEEeeeeccccceEEeeecCCCCceEE
Q 019059           12 LKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGG---------TELICEGLFSHPNEIWDLSSCPFDQRIFS   82 (346)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~---------~~~~~~~~~~h~~~v~~~~~~~~~~~l~~   82 (346)
                      +......+-++...+++.+|+.|...  .++.+.+|+..+..         .+....+...|.+.|+|+.|+|||++|++
T Consensus         9 v~H~~~~IfSIdv~pdg~~~aTgGq~--~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAs   86 (942)
T KOG0973|consen    9 VNHNEKSIFSIDVHPDGVKFATGGQV--LDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLAS   86 (942)
T ss_pred             cccCCeeEEEEEecCCceeEecCCcc--ccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEee
Confidence            44455668888999999999998643  34445578765421         12233556789999999999999999998


Q ss_pred             EEeecCCcceEEEEecCcc---------cCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCC
Q 019059           83 TVFSTGESYGAAIWQIPEL---------YGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCS  153 (346)
Q Consensus        83 ~~~~~~~d~~i~vw~~~~~---------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~  153 (346)
                          |++|+.|.||.....         .+..+...++....+.+|+..|..++|+|++. ++++++.|++|.+|+..+-
T Consensus        87 ----GSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~-~lvS~s~DnsViiwn~~tF  161 (942)
T KOG0973|consen   87 ----GSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS-LLVSVSLDNSVIIWNAKTF  161 (942)
T ss_pred             ----ccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc-EEEEecccceEEEEccccc
Confidence                589999999998731         22344556788899999999999999999988 3666688999999999876


Q ss_pred             CCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc--------eeEEEeCCCCCcEEE
Q 019059          154 NKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--------VRNVDYDTKKKHLLV  225 (346)
Q Consensus       154 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--------v~~~~~~~~~~~~l~  225 (346)
                      +....     ..+|...|.++.|.|-|+++++-+.|++|++|++.+-...+.+....        ...+.|+|||. +|+
T Consensus       162 ~~~~v-----l~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~-~la  235 (942)
T KOG0973|consen  162 ELLKV-----LRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGH-HLA  235 (942)
T ss_pred             eeeee-----eecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcC-eec
Confidence            32222     24577899999999999999999999999999977655544443211        89999999999 666


Q ss_pred             EecC----CCeEEEEEcccCCcceeeecCCCcceEEEEeCCC--------C----Cc----EEEEecCCCeEEEEecCCC
Q 019059          226 TAAD----ESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPE--------Y----DG----FILSAGTDSTVNLWLVSTS  285 (346)
Q Consensus       226 ~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~--------~----~~----~l~s~~~d~~i~iwd~~~~  285 (346)
                      +...    -..+.|.+-.+ -..-..+-+|..++.+++|+|.        |    +.    .+|+|+.|++|.||.... 
T Consensus       236 s~nA~n~~~~~~~IieR~t-Wk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~-  313 (942)
T KOG0973|consen  236 SPNAVNGGKSTIAIIERGT-WKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL-  313 (942)
T ss_pred             chhhccCCcceeEEEecCC-ceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC-
Confidence            6432    23677877654 3456678899999999999982        1    11    678999999999999987 


Q ss_pred             CCCCCCcccccCCcccccccccccccc-ccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          286 NHDELPSESLVESPNQRANSLLNSYSD-YEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                                        .+++..... ....|.+++|+|||- .|.++|.||+|.+..++
T Consensus       314 ------------------~RPl~vi~~lf~~SI~DmsWspdG~-~LfacS~DGtV~~i~Fe  355 (942)
T KOG0973|consen  314 ------------------PRPLFVIHNLFNKSIVDMSWSPDGF-SLFACSLDGTVALIHFE  355 (942)
T ss_pred             ------------------CCchhhhhhhhcCceeeeeEcCCCC-eEEEEecCCeEEEEEcc
Confidence                              555554432 355699999999996 88999999999998875

>PTZ00420 coronin; Provisional

Probab=99.98  E-value=1.7e-29  Score=220.72  Aligned_cols=228  Identities=16%  Similarity=0.181  Sum_probs=173.0

Q ss_pred             cCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCce-e--eecc
Q 019059           87 TGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQ-V--QSKQ  163 (346)
Q Consensus        87 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~-~--~~~~  163 (346)
                      ||.++.|++|+..         ...++..+.+|.+.|.+++|+|+...++++++.|+.|++||+.++..... .  ....
T Consensus        50 GG~~gvI~L~~~~---------r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~  120 (568)
T PTZ00420         50 GGLIGAIRLENQM---------RKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCI  120 (568)
T ss_pred             CCceeEEEeeecC---------CCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEE
Confidence            6778899999987         44677788999999999999998554677889999999999986432111 0  0112


Q ss_pred             cCCCceeeEEEEeCCCCCcE-EEEecCCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccC
Q 019059          164 SSGMLHYLSGGAWDPHDVNA-VAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRML  241 (346)
Q Consensus       164 ~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  241 (346)
                      ..+|...|.+++|+|++..+ ++++.|+.|++||+++++....+.... |.+++|+|+|. +|++++.|+.|++||+++ 
T Consensus       121 L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rs-  198 (568)
T PTZ00420        121 LKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRK-  198 (568)
T ss_pred             eecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCC-EEEEEecCCEEEEEECCC-
Confidence            34677799999999998875 577889999999999998776665333 99999999998 889999999999999998 


Q ss_pred             CcceeeecCCCcceEE-----EEeCCCCCcEEEEecCCC----eEEEEecCCCCCCCCCcccccCCccccccccccccc-
Q 019059          242 KAPIQELPGHTHWTWA-----VCCNPEYDGFILSAGTDS----TVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYS-  311 (346)
Q Consensus       242 ~~~~~~~~~~~~~v~~-----v~~~~~~~~~l~s~~~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  311 (346)
                      ...+..+.+|.+.+..     ..|++++ .+|++++.|+    +|+|||++.                  ...++.... 
T Consensus       199 g~~i~tl~gH~g~~~s~~v~~~~fs~d~-~~IlTtG~d~~~~R~VkLWDlr~------------------~~~pl~~~~l  259 (568)
T PTZ00420        199 QEIASSFHIHDGGKNTKNIWIDGLGGDD-NYILSTGFSKNNMREMKLWDLKN------------------TTSALVTMSI  259 (568)
T ss_pred             CcEEEEEecccCCceeEEEEeeeEcCCC-CEEEEEEcCCCCccEEEEEECCC------------------CCCceEEEEe
Confidence            5577888899876543     3356888 7888877664    799999995                  134444433 


Q ss_pred             -cccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          312 -DYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       312 -~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                       .+.+.+......+++. ++++|+.|+.|++|++.
T Consensus       260 d~~~~~L~p~~D~~tg~-l~lsGkGD~tIr~~e~~  293 (568)
T PTZ00420        260 DNASAPLIPHYDESTGL-IYLIGKGDGNCRYYQHS  293 (568)
T ss_pred             cCCccceEEeeeCCCCC-EEEEEECCCeEEEEEcc
Confidence             2333333333344464 88999999999999974

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.98  E-value=3e-30  Score=203.52  Aligned_cols=250  Identities=18%  Similarity=0.325  Sum_probs=202.5

Q ss_pred             eEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEE-eeeeccccceEEeeecCCCCceEEEEeecCCcceEEE
Q 019059           17 RCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELIC-EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAI   95 (346)
Q Consensus        17 ~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~v   95 (346)
                      +.+.++..++...+|+.+    +.++.+++|.+......+.. ..-.||...|-+++..+++..++++    +.|..|.+
T Consensus       148 k~v~~v~~n~~~~~fvsa----s~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~Sg----S~D~~lki  219 (423)
T KOG0313|consen  148 KSVAWVIKNSSSCLFVSA----SMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSG----SWDTMLKI  219 (423)
T ss_pred             eeeEEEecCCccceEEEe----cCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEee----cccceeee
Confidence            344455566666677765    47889999999876543332 2234999999999999999988884    79999999


Q ss_pred             EecCccc----------------CCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCcee
Q 019059           96 WQIPELY----------------GQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQV  159 (346)
Q Consensus        96 w~~~~~~----------------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~  159 (346)
                      |+.+...                .........++.++.+|.++|.++.|++.+.  +++++.|.+|+.||+.+++....+
T Consensus       220 Ws~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v--~yS~SwDHTIk~WDletg~~~~~~  297 (423)
T KOG0313|consen  220 WSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATV--IYSVSWDHTIKVWDLETGGLKSTL  297 (423)
T ss_pred             cccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCc--eEeecccceEEEEEeecccceeee
Confidence            9933210                1123345677888999999999999998444  888899999999999998876666


Q ss_pred             eecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCC--ccceeeccc---eeEEEeCCCCCcEEEEecCCCeEE
Q 019059          160 QSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG--KTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIH  234 (346)
Q Consensus       160 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~  234 (346)
                      ....      .++++..+|....|++++.|..|++||.+++.  .+..-..+|   |.++.|+|...+.|++|+.|++++
T Consensus       298 ~~~k------sl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~k  371 (423)
T KOG0313|consen  298 TTNK------SLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVK  371 (423)
T ss_pred             ecCc------ceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEE
Confidence            5543      89999999999999999999999999999875  233223467   999999999999999999999999


Q ss_pred             EEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          235 LWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       235 i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      +||+|....|+..+.+|...|.++.|+..  .++++|+.|++|+|+.-..
T Consensus       372 lWDvRS~k~plydI~~h~DKvl~vdW~~~--~~IvSGGaD~~l~i~~~~~  419 (423)
T KOG0313|consen  372 LWDVRSTKAPLYDIAGHNDKVLSVDWNEG--GLIVSGGADNKLRIFKGSP  419 (423)
T ss_pred             EEEeccCCCcceeeccCCceEEEEeccCC--ceEEeccCcceEEEecccc
Confidence            99999977799999999999999999864  5899999999999987653

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.98  E-value=1.2e-28  Score=181.94  Aligned_cols=294  Identities=16%  Similarity=0.215  Sum_probs=221.6

Q ss_pred             eeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCC------------CCeEEEeeeeccccceEEeeecCCCCceEE
Q 019059           15 QARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSG------------GTELICEGLFSHPNEIWDLSSCPFDQRIFS   82 (346)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~   82 (346)
                      ..+++.++.+.|.+.-+++|+.+    ..++++.++..            .+.+.++.-..|.+.|.|.+|+|.|+.+++
T Consensus        31 dsqairav~fhp~g~lyavgsns----kt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliat  106 (350)
T KOG0641|consen   31 DSQAIRAVAFHPAGGLYAVGSNS----KTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIAT  106 (350)
T ss_pred             chhheeeEEecCCCceEEeccCC----ceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEe
Confidence            45677888899999999998643    34555544421            234555666789999999999999987777


Q ss_pred             EEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecC---CCCcEEEE-ecCCeEEEEEcCCCCCCce
Q 019059           83 TVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSS---GRHDKLVS-IDEENIFLWSLDCSNKNAQ  158 (346)
Q Consensus        83 ~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~-~~d~~i~vwd~~~~~~~~~  158 (346)
                          |++|.+|++..+.....   +.. ..-..+.-|++.|..++|..+   +..+++++ ..|..|++-|...++....
T Consensus       107 ----gsndk~ik~l~fn~dt~---~~~-g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a  178 (350)
T KOG0641|consen  107 ----GSNDKTIKVLPFNADTC---NAT-GHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHA  178 (350)
T ss_pred             ----cCCCceEEEEecccccc---ccc-CcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCccee
Confidence                58999999987763211   111 222356779999999999643   33334333 3467777777776654332


Q ss_pred             eeecccCCCceeeEEE-EeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---------eeEEEeCCCCCcEEEEec
Q 019059          159 VQSKQSSGMLHYLSGG-AWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---------VRNVDYDTKKKHLLVTAA  228 (346)
Q Consensus       159 ~~~~~~~~~~~~v~~~-~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---------v~~~~~~~~~~~~l~~~~  228 (346)
                      +     .+|...|.++ .|  ++-.+++++.|.+|++||++-..++.++....         |.+++..|.|+ +|++|.
T Consensus       179 ~-----sghtghilalysw--n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgr-ll~sg~  250 (350)
T KOG0641|consen  179 L-----SGHTGHILALYSW--NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGR-LLASGH  250 (350)
T ss_pred             e-----cCCcccEEEEEEe--cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcc-eeeecc
Confidence            2     3455556555 45  47788999999999999999888887665221         99999999999 999999


Q ss_pred             CCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccc
Q 019059          229 DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLN  308 (346)
Q Consensus       229 ~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (346)
                      .|....+||+|- +++++.+..|...|.|+.|+|.. .++.+++.|..|++=|++..   .            ...-++.
T Consensus       251 ~dssc~lydirg-~r~iq~f~phsadir~vrfsp~a-~yllt~syd~~ikltdlqgd---l------------a~el~~~  313 (350)
T KOG0641|consen  251 ADSSCMLYDIRG-GRMIQRFHPHSADIRCVRFSPGA-HYLLTCSYDMKIKLTDLQGD---L------------AHELPIM  313 (350)
T ss_pred             CCCceEEEEeeC-CceeeeeCCCccceeEEEeCCCc-eEEEEecccceEEEeecccc---h------------hhcCceE
Confidence            999999999996 77999999999999999999998 99999999999999999840   0            0012233


Q ss_pred             ccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeecC
Q 019059          309 SYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLEK  346 (346)
Q Consensus       309 ~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~~  346 (346)
                      ....|...+..+.|+|..- -+++.+.|.++.+|.+.+
T Consensus       314 vv~ehkdk~i~~rwh~~d~-sfisssadkt~tlwa~~~  350 (350)
T KOG0641|consen  314 VVAEHKDKAIQCRWHPQDF-SFISSSADKTATLWALNG  350 (350)
T ss_pred             EEEeccCceEEEEecCccc-eeeeccCcceEEEeccCC
Confidence            4456888888999999874 789999999999998764

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.97  E-value=2.1e-30  Score=208.87  Aligned_cols=278  Identities=17%  Similarity=0.282  Sum_probs=208.6

Q ss_pred             cCCCCeEEEeeeeccc--cceEEeeecCC--CC--------ceEEEEee-cCCcceEEEEecCcc--cC-----------
Q 019059           50 SSGGTELICEGLFSHP--NEIWDLSSCPF--DQ--------RIFSTVFS-TGESYGAAIWQIPEL--YG-----------  103 (346)
Q Consensus        50 ~~~~~~~~~~~~~~h~--~~v~~~~~~~~--~~--------~l~~~~~~-~~~d~~i~vw~~~~~--~~-----------  103 (346)
                      |..+.+..+..+..|.  -+-..+.|-|+  ..        +|+.+..+ ++....+.|=++.-+  ..           
T Consensus        23 WKkNtp~LYDlv~th~LeWPSLt~qWlPd~~~~~~~~~~~~rliLGthTs~~~~n~L~iA~v~lp~~~~~~~~~~~~~e~  102 (422)
T KOG0264|consen   23 WKKNTPFLYDLVITHALEWPSLTVQWLPDVTKPEEKDFSKQRLILGTHTSGSEQNYLVIASVQLPTDDAQFEDKHYDEER  102 (422)
T ss_pred             HhhcCcHHHHHhhhccccccceEEEEcCCcccccCCCceeEEEEEEeecCCCCccEEEEEeecCCCcccccccccccccc
Confidence            4555555666666666  56677889886  22        45554433 446777777764311  00           


Q ss_pred             -C-----CCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceee-----ecccCCCceeeE
Q 019059          104 -Q-----LNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQ-----SKQSSGMLHYLS  172 (346)
Q Consensus       104 -~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~-----~~~~~~~~~~v~  172 (346)
                       +     ......+... .-.|.+.|+.+.+.|+...++++.+..+.|.|||..+........     .....+|...-+
T Consensus       103 ~e~~g~~~~~~~v~i~~-~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~  181 (422)
T KOG0264|consen  103 GEFGGFGAVSGKVEISQ-KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGY  181 (422)
T ss_pred             cccCCccccccceEEEE-eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccccc
Confidence             0     0001112222 237899999999999999744444778999999987643322211     012345666788


Q ss_pred             EEEeCCCCC-cEEEEecCCeEEEEEccCCCc------cceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEccc-C
Q 019059          173 GGAWDPHDV-NAVAATCESSVQFWDLRSMGK------TNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRM-L  241 (346)
Q Consensus       173 ~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~------~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~  241 (346)
                      +++|++... .+++++.|+.|++||+.....      .+....+|   |..++|++....+|++++.|+.+.|||+|. .
T Consensus       182 glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~  261 (422)
T KOG0264|consen  182 GLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT  261 (422)
T ss_pred             ccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC
Confidence            899998654 477888899999999986543      23333466   999999999988999999999999999995 3


Q ss_pred             CcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEE
Q 019059          242 KAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLA  321 (346)
Q Consensus       242 ~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  321 (346)
                      .++.+...+|..+|+|++|+|.+..+||+||.|++|++||+|.                  ..+++.++.+|...|..|.
T Consensus       262 ~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRn------------------L~~~lh~~e~H~dev~~V~  323 (422)
T KOG0264|consen  262 SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRN------------------LNKPLHTFEGHEDEVFQVE  323 (422)
T ss_pred             CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechh------------------cccCceeccCCCcceEEEE
Confidence            5577778899999999999999989999999999999999998                  3678999999999999999


Q ss_pred             eCCCCCcEEEEeecCCeEEEeeecC
Q 019059          322 WSSREPWIFASLSYDGRVRNHMLEK  346 (346)
Q Consensus       322 ~~~~~~~~l~s~~~d~~v~vw~~~~  346 (346)
                      |+|+...+||+++.|+++.|||+.+
T Consensus       324 WSPh~etvLASSg~D~rl~vWDls~  348 (422)
T KOG0264|consen  324 WSPHNETVLASSGTDRRLNVWDLSR  348 (422)
T ss_pred             eCCCCCceeEecccCCcEEEEeccc
Confidence            9999888999999999999999864

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=9.2e-30  Score=221.35  Aligned_cols=233  Identities=16%  Similarity=0.230  Sum_probs=175.8

Q ss_pred             eeeccccceEEeeecC-CCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEE
Q 019059           60 GLFSHPNEIWDLSSCP-FDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV  138 (346)
Q Consensus        60 ~~~~h~~~v~~~~~~~-~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  138 (346)
                      .+.+|.+.|.+++|+| ++..|+++    +.|++|++||+.....  ......++..+.+|...|.+++|+|++..++++
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSg----S~DgtIkIWdi~~~~~--~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaS  143 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTA----SEDGTIMGWGIPEEGL--TQNISDPIVHLQGHTKKVGIVSFHPSAMNVLAS  143 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEE----eCCCEEEEEecCCCcc--ccccCcceEEecCCCCcEEEEEeCcCCCCEEEE
Confidence            4678999999999999 56666664    7999999999973210  001124567788999999999999987666778


Q ss_pred             EecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc----eeEE
Q 019059          139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH----VRNV  214 (346)
Q Consensus       139 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~----v~~~  214 (346)
                      ++.|+.|++||+.++.....     ..+|...|.+++|+|++..+++++.|+.|++||+++++.+..+. +|    ...+
T Consensus       144 gs~DgtVrIWDl~tg~~~~~-----l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~-~H~~~~~~~~  217 (493)
T PTZ00421        144 AGADMVVNVWDVERGKAVEV-----IKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE-AHASAKSQRC  217 (493)
T ss_pred             EeCCCEEEEEECCCCeEEEE-----EcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEe-cCCCCcceEE
Confidence            88899999999987653222     23466789999999999999999999999999999998877665 44    5577


Q ss_pred             EeCCCCCcEEEE-e---cCCCeEEEEEcccCCcceeeecCCC-cceEEEEeCCCCCcEEEEec-CCCeEEEEecCCCCCC
Q 019059          215 DYDTKKKHLLVT-A---ADESGIHLWDLRMLKAPIQELPGHT-HWTWAVCCNPEYDGFILSAG-TDSTVNLWLVSTSNHD  288 (346)
Q Consensus       215 ~~~~~~~~~l~~-~---~~dg~i~i~d~~~~~~~~~~~~~~~-~~v~~v~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~  288 (346)
                      .|.+++. .+++ |   +.|+.|++||+++...++.....+. ..+....|++++ .+|++++ .|+.|++||+..    
T Consensus       218 ~w~~~~~-~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~-~~L~lggkgDg~Iriwdl~~----  291 (493)
T PTZ00421        218 LWAKRKD-LIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDT-NLLYIGSKGEGNIRCFELMN----  291 (493)
T ss_pred             EEcCCCC-eEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCC-CEEEEEEeCCCeEEEEEeeC----
Confidence            8998887 4554 3   3578999999998666666554333 456667799999 7888777 599999999997    


Q ss_pred             CCCcccccCCcccccccccccccc-ccceeeEEEeCCC
Q 019059          289 ELPSESLVESPNQRANSLLNSYSD-YEDSVYGLAWSSR  325 (346)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~  325 (346)
                                     ++++..... +..++..++|.|.
T Consensus       292 ---------------~~~~~~~~~~s~~~~~g~~~~pk  314 (493)
T PTZ00421        292 ---------------ERLTFCSSYSSVEPHKGLCMMPK  314 (493)
T ss_pred             ---------------CceEEEeeccCCCCCcceEeccc
Confidence                           444443322 3345667777763

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=5.9e-31  Score=203.94  Aligned_cols=278  Identities=13%  Similarity=0.213  Sum_probs=237.9

Q ss_pred             eeccCCCCcceEEEeecccCCCCeEEEEEecCCC-----CeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEE
Q 019059           20 SDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGG-----TELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAA   94 (346)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~   94 (346)
                      .+..++|+++-++.|+    .++.+-+|++-..+     +......+.-+..+|.|+.|+.|...+++    |+.||.|+
T Consensus       217 EcA~FSPDgqyLvsgS----vDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAs----GsqDGkIK  288 (508)
T KOG0275|consen  217 ECARFSPDGQYLVSGS----VDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLAS----GSQDGKIK  288 (508)
T ss_pred             hheeeCCCCceEeecc----ccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhc----cCcCCcEE
Confidence            3445788998888874    57889999987643     22233456668899999999999888777    58999999


Q ss_pred             EEecCcccCCCCCccceeeeeee-ccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEE
Q 019059           95 IWQIPELYGQLNSPQLERIAALD-AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSG  173 (346)
Q Consensus        95 vw~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~  173 (346)
                      ||.+.         ++++++.+. .|...|+|+.|+.|+.+ +++++.|.++++.-+.+++...+     ..+|...|+.
T Consensus       289 vWri~---------tG~ClRrFdrAHtkGvt~l~FSrD~Sq-iLS~sfD~tvRiHGlKSGK~LKE-----frGHsSyvn~  353 (508)
T KOG0275|consen  289 VWRIE---------TGQCLRRFDRAHTKGVTCLSFSRDNSQ-ILSASFDQTVRIHGLKSGKCLKE-----FRGHSSYVNE  353 (508)
T ss_pred             EEEEe---------cchHHHHhhhhhccCeeEEEEccCcch-hhcccccceEEEeccccchhHHH-----hcCccccccc
Confidence            99999         899999986 89999999999999997 77778899999999998775443     4578889999


Q ss_pred             EEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc----eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeec
Q 019059          174 GAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH----VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP  249 (346)
Q Consensus       174 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~----v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  249 (346)
                      ..|.++|.++++++.||+|++|+..+.+++.++....    |+++-.-|.++..++++....+|.+.++.  ++.++.+.
T Consensus       354 a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q--GQvVrsfs  431 (508)
T KOG0275|consen  354 ATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ--GQVVRSFS  431 (508)
T ss_pred             eEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc--ceEEeeec
Confidence            9999999999999999999999999999999888554    88988888887788999999999999987  56777776


Q ss_pred             CC---CcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCC
Q 019059          250 GH---THWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSRE  326 (346)
Q Consensus       250 ~~---~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  326 (346)
                      ..   .+...+...+|.| .++++.++|+.++.|...+                   +++-.++.-|...|-.++-+|..
T Consensus       432 SGkREgGdFi~~~lSpkG-ewiYcigED~vlYCF~~~s-------------------G~LE~tl~VhEkdvIGl~HHPHq  491 (508)
T KOG0275|consen  432 SGKREGGDFINAILSPKG-EWIYCIGEDGVLYCFSVLS-------------------GKLERTLPVHEKDVIGLTHHPHQ  491 (508)
T ss_pred             cCCccCCceEEEEecCCC-cEEEEEccCcEEEEEEeec-------------------CceeeeeecccccccccccCccc
Confidence            32   2455666799999 9999999999999999998                   88889999999999999999988


Q ss_pred             CcEEEEeecCCeEEEee
Q 019059          327 PWIFASLSYDGRVRNHM  343 (346)
Q Consensus       327 ~~~l~s~~~d~~v~vw~  343 (346)
                      + ++|+-++||.+++|.
T Consensus       492 N-llAsYsEDgllKLWk  507 (508)
T KOG0275|consen  492 N-LLASYSEDGLLKLWK  507 (508)
T ss_pred             c-hhhhhcccchhhhcC
Confidence            6 999999999999995

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=7.4e-29  Score=215.72  Aligned_cols=252  Identities=13%  Similarity=0.156  Sum_probs=177.8

Q ss_pred             cceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCC-CCCccce---eeeeeeccCCceEEEEeec-CCCCcEEEEe
Q 019059           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQ-LNSPQLE---RIAALDAHVGKINCVLWWS-SGRHDKLVSI  140 (346)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~-~~~~~~~---~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~  140 (346)
                      ..|.....++++..++++    +.+.....|+......- .....++   ....+.+|.+.|.+++|+| ++. ++++++
T Consensus        21 ~~i~~~~~~~d~~~~~~~----n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~-~LaSgS   95 (493)
T PTZ00421         21 LNVTPSTALWDCSNTIAC----NDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ-KLFTAS   95 (493)
T ss_pred             eccccccccCCCCCcEeE----CCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC-EEEEEe
Confidence            445555566665666554    45555556654310000 0000111   1124678999999999999 555 577788


Q ss_pred             cCCeEEEEEcCCCCCCce--eeecccCCCceeeEEEEeCCCC-CcEEEEecCCeEEEEEccCCCccceeeccc---eeEE
Q 019059          141 DEENIFLWSLDCSNKNAQ--VQSKQSSGMLHYLSGGAWDPHD-VNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNV  214 (346)
Q Consensus       141 ~d~~i~vwd~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~  214 (346)
                      .|+.|++||+.+......  .......+|...|.+++|+|++ ..|++++.|+.|++||+++++....+. .|   |.++
T Consensus        96 ~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~-~h~~~V~sl  174 (493)
T PTZ00421         96 EDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIK-CHSDQITSL  174 (493)
T ss_pred             CCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc-CCCCceEEE
Confidence            999999999976432111  1112235678899999999986 578888999999999999998777765 44   9999


Q ss_pred             EeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcc-eEEEEeCCCCCcEEEEec----CCCeEEEEecCCCCCCC
Q 019059          215 DYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHW-TWAVCCNPEYDGFILSAG----TDSTVNLWLVSTSNHDE  289 (346)
Q Consensus       215 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-v~~v~~~~~~~~~l~s~~----~d~~i~iwd~~~~~~~~  289 (346)
                      +|+|++. +|++++.|+.|++||+++ ...+..+.+|... +..+.|.+++ ..+++++    .|+.|++||++..    
T Consensus       175 a~spdG~-lLatgs~Dg~IrIwD~rs-g~~v~tl~~H~~~~~~~~~w~~~~-~~ivt~G~s~s~Dr~VklWDlr~~----  247 (493)
T PTZ00421        175 EWNLDGS-LLCTTSKDKKLNIIDPRD-GTIVSSVEAHASAKSQRCLWAKRK-DLIITLGCSKSQQRQIMLWDTRKM----  247 (493)
T ss_pred             EEECCCC-EEEEecCCCEEEEEECCC-CcEEEEEecCCCCcceEEEEcCCC-CeEEEEecCCCCCCeEEEEeCCCC----
Confidence            9999998 999999999999999998 5577788888765 4567899988 5665543    4799999999861    


Q ss_pred             CCcccccCCccccccccccccccc-cceeeEEEeCCCCCcEEEEee-cCCeEEEeeec
Q 019059          290 LPSESLVESPNQRANSLLNSYSDY-EDSVYGLAWSSREPWIFASLS-YDGRVRNHMLE  345 (346)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~-~d~~v~vw~~~  345 (346)
                                    ..++.....+ ...+....|++++. +|++++ .|+.|++|++.
T Consensus       248 --------------~~p~~~~~~d~~~~~~~~~~d~d~~-~L~lggkgDg~Iriwdl~  290 (493)
T PTZ00421        248 --------------ASPYSTVDLDQSSALFIPFFDEDTN-LLYIGSKGEGNIRCFELM  290 (493)
T ss_pred             --------------CCceeEeccCCCCceEEEEEcCCCC-EEEEEEeCCCeEEEEEee
Confidence                          2233333222 33466678999997 666666 59999999986

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=2.3e-29  Score=201.77  Aligned_cols=281  Identities=19%  Similarity=0.261  Sum_probs=224.5

Q ss_pred             eeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEec
Q 019059           19 ISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQI   98 (346)
Q Consensus        19 ~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~   98 (346)
                      +.++...+.....++|    +.+..+.+++.+.+.   ....+.||...|+.+.++|+...++++    +.|..|+||..
T Consensus       222 i~ald~~~s~~~ilTG----G~d~~av~~d~~s~q---~l~~~~Gh~kki~~v~~~~~~~~v~~a----Sad~~i~vws~  290 (506)
T KOG0289|consen  222 ITALDIIPSSSKILTG----GEDKTAVLFDKPSNQ---ILATLKGHTKKITSVKFHKDLDTVITA----SADEIIRVWSV  290 (506)
T ss_pred             eeEEeecCCCCcceec----CCCCceEEEecchhh---hhhhccCcceEEEEEEeccchhheeec----CCcceEEeecc
Confidence            3344444443344443    455566677666542   446788999999999999988877774    78999999998


Q ss_pred             CcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCC
Q 019059           99 PELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDP  178 (346)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  178 (346)
                      .         ..........|.++|+.+..+|.|.| +++++.|+...+.|++++..........   ..-.+++.+|+|
T Consensus       291 ~---------~~s~~~~~~~h~~~V~~ls~h~tgeY-llsAs~d~~w~Fsd~~~g~~lt~vs~~~---s~v~~ts~~fHp  357 (506)
T KOG0289|consen  291 P---------LSSEPTSSRPHEEPVTGLSLHPTGEY-LLSASNDGTWAFSDISSGSQLTVVSDET---SDVEYTSAAFHP  357 (506)
T ss_pred             c---------cccCccccccccccceeeeeccCCcE-EEEecCCceEEEEEccCCcEEEEEeecc---ccceeEEeeEcC
Confidence            7         34455667799999999999999998 7777889999999999887655544321   223689999999


Q ss_pred             CCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecC-CCcc
Q 019059          179 HDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG-HTHW  254 (346)
Q Consensus       179 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~  254 (346)
                      ||..+.++..|+.|++||+..+..+..|. +|   |..++|+.+| |+++++.+|+.|++||+|+.. ...++.. ...+
T Consensus       358 DgLifgtgt~d~~vkiwdlks~~~~a~Fp-ght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~-n~kt~~l~~~~~  434 (506)
T KOG0289|consen  358 DGLIFGTGTPDGVVKIWDLKSQTNVAKFP-GHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKLK-NFKTIQLDEKKE  434 (506)
T ss_pred             CceEEeccCCCceEEEEEcCCccccccCC-CCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhhc-ccceeecccccc
Confidence            99999999999999999999999888887 57   9999999999 499999999999999999854 4555543 2347


Q ss_pred             eEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEee
Q 019059          255 TWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLS  334 (346)
Q Consensus       255 v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  334 (346)
                      +.++.|.+.| .+|+.++.|=+|++++-.+                 ..+.++..+..|.+..+.+.|....+ +++++|
T Consensus       435 v~s~~fD~SG-t~L~~~g~~l~Vy~~~k~~-----------------k~W~~~~~~~~~sg~st~v~Fg~~aq-~l~s~s  495 (506)
T KOG0289|consen  435 VNSLSFDQSG-TYLGIAGSDLQVYICKKKT-----------------KSWTEIKELADHSGLSTGVRFGEHAQ-YLASTS  495 (506)
T ss_pred             ceeEEEcCCC-CeEEeecceeEEEEEeccc-----------------ccceeeehhhhcccccceeeecccce-EEeecc
Confidence            9999999999 9999998887777776544                 23778888888998899999999886 999999


Q ss_pred             cCCeEEEeeec
Q 019059          335 YDGRVRNHMLE  345 (346)
Q Consensus       335 ~d~~v~vw~~~  345 (346)
                      .|..++++.++
T Consensus       496 md~~l~~~a~~  506 (506)
T KOG0289|consen  496 MDAILRLYALT  506 (506)
T ss_pred             chhheEEeecC
Confidence            99999998763

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=9.6e-30  Score=206.77  Aligned_cols=242  Identities=17%  Similarity=0.260  Sum_probs=205.8

Q ss_pred             eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEE
Q 019059           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV  138 (346)
Q Consensus        59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  138 (346)
                      +.+......|.++.|..||+.+++    |+..|.|+|+|+.         +...++.+.+|+.+|..+.|+|++..+++.
T Consensus        62 k~~srFk~~v~s~~fR~DG~Llaa----GD~sG~V~vfD~k---------~r~iLR~~~ah~apv~~~~f~~~d~t~l~s  128 (487)
T KOG0310|consen   62 KTFSRFKDVVYSVDFRSDGRLLAA----GDESGHVKVFDMK---------SRVILRQLYAHQAPVHVTKFSPQDNTMLVS  128 (487)
T ss_pred             hhHHhhccceeEEEeecCCeEEEc----cCCcCcEEEeccc---------cHHHHHHHhhccCceeEEEecccCCeEEEe
Confidence            445667789999999999987777    5899999999976         566788899999999999999999987777


Q ss_pred             EecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCC-cEEEEecCCeEEEEEccCC-Cccceeeccc-eeEEE
Q 019059          139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDV-NAVAATCESSVQFWDLRSM-GKTNSIEHAH-VRNVD  215 (346)
Q Consensus       139 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~-v~~~~  215 (346)
                      +++|+.+++||+.+..    . .....+|...|.+.+|+|... .+++|+.||.|++||++.. ..+.++..++ |..+.
T Consensus       129 ~sDd~v~k~~d~s~a~----v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl  203 (487)
T KOG0310|consen  129 GSDDKVVKYWDLSTAY----V-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVL  203 (487)
T ss_pred             cCCCceEEEEEcCCcE----E-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEE
Confidence            7889999999998654    1 334467888999999999766 5677788999999999987 6777777777 99999


Q ss_pred             eCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccc
Q 019059          216 YDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESL  295 (346)
Q Consensus       216 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  295 (346)
                      +-|.|. ++++++. ..|++||+-..++.+..+..|...|+|+++..++ ..|++++.|+.|++||+..           
T Consensus       204 ~lpsgs-~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~-~rLlS~sLD~~VKVfd~t~-----------  269 (487)
T KOG0310|consen  204 ALPSGS-LIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDS-TRLLSGSLDRHVKVFDTTN-----------  269 (487)
T ss_pred             EcCCCC-EEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCC-ceEeecccccceEEEEccc-----------
Confidence            999998 8888765 5899999997777777777799999999999999 9999999999999999877           


Q ss_pred             cCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEe
Q 019059          296 VESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNH  342 (346)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw  342 (346)
                              .+.++.+. ..++|.+++.+|+++ .++.|..+|.+.+=
T Consensus       270 --------~Kvv~s~~-~~~pvLsiavs~dd~-t~viGmsnGlv~~r  306 (487)
T KOG0310|consen  270 --------YKVVHSWK-YPGPVLSIAVSPDDQ-TVVIGMSNGLVSIR  306 (487)
T ss_pred             --------eEEEEeee-cccceeeEEecCCCc-eEEEecccceeeee
Confidence                    67777664 567899999999987 78889889987653

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=7e-30  Score=207.54  Aligned_cols=240  Identities=21%  Similarity=0.280  Sum_probs=195.9

Q ss_pred             cccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCC
Q 019059           64 HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEE  143 (346)
Q Consensus        64 h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~  143 (346)
                      ..+.|.+++|+|..++=++++    ..-.+.+|+..         .....+++...+..+++++|..||+ ++++|...|
T Consensus        25 e~~~vssl~fsp~~P~d~aVt----~S~rvqly~~~---------~~~~~k~~srFk~~v~s~~fR~DG~-LlaaGD~sG   90 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVT----SSVRVQLYSSV---------TRSVRKTFSRFKDVVYSVDFRSDGR-LLAAGDESG   90 (487)
T ss_pred             ccCcceeEecCCCCCCceEEe----cccEEEEEecc---------hhhhhhhHHhhccceeEEEeecCCe-EEEccCCcC
Confidence            447899999999988777664    44589999987         5667777777888999999999999 466667789


Q ss_pred             eEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEE-EEecCCeEEEEEccCCCccceeeccc---eeEEEeCCC
Q 019059          144 NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAV-AATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTK  219 (346)
Q Consensus       144 ~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~  219 (346)
                      .|++||+.+     +.......+|..++..+.|+|++..++ ++++|+.+++||+.+......+. +|   |+|.+|+|.
T Consensus        91 ~V~vfD~k~-----r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~-~htDYVR~g~~~~~  164 (487)
T KOG0310|consen   91 HVKVFDMKS-----RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELS-GHTDYVRCGDISPA  164 (487)
T ss_pred             cEEEecccc-----HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEec-CCcceeEeeccccC
Confidence            999999653     122223346788999999999877655 55567889999999888533444 66   999999999


Q ss_pred             CCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCc
Q 019059          220 KKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESP  299 (346)
Q Consensus       220 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  299 (346)
                      .+.++++|+.||.|++||+|.....+.++. |..+|..+.+-|.| ..+++++. ..|+|||+.+               
T Consensus       165 ~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsg-s~iasAgG-n~vkVWDl~~---------------  226 (487)
T KOG0310|consen  165 NDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSG-SLIASAGG-NSVKVWDLTT---------------  226 (487)
T ss_pred             CCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCC-CEEEEcCC-CeEEEEEecC---------------
Confidence            888999999999999999998655666664 99999999999999 89999885 4799999997               


Q ss_pred             cccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          300 NQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       300 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                         .++.+.....|...|+|+++..++. .|++++-|+.|++|++.
T Consensus       227 ---G~qll~~~~~H~KtVTcL~l~s~~~-rLlS~sLD~~VKVfd~t  268 (487)
T KOG0310|consen  227 ---GGQLLTSMFNHNKTVTCLRLASDST-RLLSGSLDRHVKVFDTT  268 (487)
T ss_pred             ---CceehhhhhcccceEEEEEeecCCc-eEeecccccceEEEEcc
Confidence               2566666666999999999999886 88999999999999964

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.1e-28  Score=190.37  Aligned_cols=266  Identities=14%  Similarity=0.197  Sum_probs=207.6

Q ss_pred             eEEEeecccCCCCeEEEEEecCCC-------Ce--EEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCc
Q 019059           30 SFLTGTLSLKEENEVHLLRLSSGG-------TE--LICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPE  100 (346)
Q Consensus        30 ~~~~g~~~~~~~~~i~~~~~~~~~-------~~--~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~  100 (346)
                      ++++|++    +..|+.+.+.++.       ++  ...-.+..|.+.|++++.+  ++++++    |+.|-+|+|||+. 
T Consensus         3 ~iIvGtY----E~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aS----GssDetI~IYDm~-   71 (362)
T KOG0294|consen    3 EIIVGTY----EHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVAS----GSSDETIHIYDMR-   71 (362)
T ss_pred             eEEEeee----eeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEec----cCCCCcEEEEecc-
Confidence            6777764    4556666666543       01  1123456788999999996  677777    5899999999998 


Q ss_pred             ccCCCCCccceeeeeeeccCCceEEEEeecCCC-CcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCC
Q 019059          101 LYGQLNSPQLERIAALDAHVGKINCVLWWSSGR-HDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPH  179 (346)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  179 (346)
                              ....+..+-.|.+.|+++.|.+.-. ..++++++||.|.+|+...-     .......+|...|+.++.+|.
T Consensus        72 --------k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W-----~~~~slK~H~~~Vt~lsiHPS  138 (362)
T KOG0294|consen   72 --------KRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW-----ELLKSLKAHKGQVTDLSIHPS  138 (362)
T ss_pred             --------chhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe-----EEeeeecccccccceeEecCC
Confidence                    6677777889999999999988753 12888899999999998742     223334567778999999999


Q ss_pred             CCcEEEEecCCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEE
Q 019059          180 DVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAV  258 (346)
Q Consensus       180 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v  258 (346)
                      ++..++.+.|+.+++|++-.++.-......+ .+.+.|+|.|. .++.+..+ .|-+|.+.+ ......+. ....+.++
T Consensus       139 ~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd-~F~v~~~~-~i~i~q~d~-A~v~~~i~-~~~r~l~~  214 (362)
T KOG0294|consen  139 GKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGD-HFVVSGRN-KIDIYQLDN-ASVFREIE-NPKRILCA  214 (362)
T ss_pred             CceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCC-EEEEEecc-EEEEEeccc-HhHhhhhh-ccccceee
Confidence            9999999999999999999998777666566 77799999999 56666653 788998886 33333333 23456777


Q ss_pred             EeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEe--CCCCCcEEEEeecC
Q 019059          259 CCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAW--SSREPWIFASLSYD  336 (346)
Q Consensus       259 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~s~~~d  336 (346)
                      .|-..  ..|++|+.|+.|++||...                   ..+...+.+|...|.++.+  .|++ .+|+++|.|
T Consensus       215 ~~l~~--~~L~vG~d~~~i~~~D~ds-------------------~~~~~~~~AH~~RVK~i~~~~~~~~-~~lvTaSSD  272 (362)
T KOG0294|consen  215 TFLDG--SELLVGGDNEWISLKDTDS-------------------DTPLTEFLAHENRVKDIASYTNPEH-EYLVTASSD  272 (362)
T ss_pred             eecCC--ceEEEecCCceEEEeccCC-------------------CccceeeecchhheeeeEEEecCCc-eEEEEeccC
Confidence            66543  6899999999999999998                   7889999999999999984  4555 499999999


Q ss_pred             CeEEEeeec
Q 019059          337 GRVRNHMLE  345 (346)
Q Consensus       337 ~~v~vw~~~  345 (346)
                      |.|+|||++
T Consensus       273 G~I~vWd~~  281 (362)
T KOG0294|consen  273 GFIKVWDID  281 (362)
T ss_pred             ceEEEEEcc
Confidence            999999985

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.7e-28  Score=189.64  Aligned_cols=244  Identities=15%  Similarity=0.183  Sum_probs=203.7

Q ss_pred             eeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEe
Q 019059           61 LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI  140 (346)
Q Consensus        61 ~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  140 (346)
                      +..-.+.|+++.|+++|..++++    +.|.+++|||..         .++.++++..++..+..++|...... ++.++
T Consensus        10 f~~~~~~i~sl~fs~~G~~lits----s~dDsl~LYd~~---------~g~~~~ti~skkyG~~~~~Fth~~~~-~i~sS   75 (311)
T KOG1446|consen   10 FRETNGKINSLDFSDDGLLLITS----SEDDSLRLYDSL---------SGKQVKTINSKKYGVDLACFTHHSNT-VIHSS   75 (311)
T ss_pred             cccCCCceeEEEecCCCCEEEEe----cCCCeEEEEEcC---------CCceeeEeecccccccEEEEecCCce-EEEcc
Confidence            33456899999999999999985    588899999998         78888999888888999999877665 44443


Q ss_pred             --cCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccceeEEEeCC
Q 019059          141 --DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDT  218 (346)
Q Consensus       141 --~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~v~~~~~~~  218 (346)
                        .|..|+..++.+++.     .....||...|.+++.+|-+..+++++.|++|++||++..++...+....-..++|+|
T Consensus        76 tk~d~tIryLsl~dNky-----lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp  150 (311)
T KOG1446|consen   76 TKEDDTIRYLSLHDNKY-----LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDP  150 (311)
T ss_pred             CCCCCceEEEEeecCce-----EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECC
Confidence              489999999986553     2345689999999999999999999999999999999988887777644466789999


Q ss_pred             CCCcEEEEecCCCeEEEEEcccC-CcceeeecCC---CcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCccc
Q 019059          219 KKKHLLVTAADESGIHLWDLRML-KAPIQELPGH---THWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSES  294 (346)
Q Consensus       219 ~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~---~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  294 (346)
                      +|- ++|++.....|++||+|.. +.|..++...   ....+.+.|||+| ++|+.+...+.+++.|.-.          
T Consensus       151 ~GL-ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dG-K~iLlsT~~s~~~~lDAf~----------  218 (311)
T KOG1446|consen  151 EGL-IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDG-KSILLSTNASFIYLLDAFD----------  218 (311)
T ss_pred             CCc-EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCC-CEEEEEeCCCcEEEEEccC----------
Confidence            997 8888887779999999986 4466666543   5678999999999 8998889999999999998          


Q ss_pred             ccCCccccccccccccccccce---eeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          295 LVESPNQRANSLLNSYSDYEDS---VYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                               +....++.++...   -.+..|.|+++ ++++|+.||+|.+|+++
T Consensus       219 ---------G~~~~tfs~~~~~~~~~~~a~ftPds~-Fvl~gs~dg~i~vw~~~  262 (311)
T KOG1446|consen  219 ---------GTVKSTFSGYPNAGNLPLSATFTPDSK-FVLSGSDDGTIHVWNLE  262 (311)
T ss_pred             ---------CcEeeeEeeccCCCCcceeEEECCCCc-EEEEecCCCcEEEEEcC
Confidence                     7787777776542   25788999998 89999999999999985

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=2.9e-28  Score=207.79  Aligned_cols=262  Identities=18%  Similarity=0.276  Sum_probs=214.7

Q ss_pred             CCCeEEEEEecCCCC------eEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceee
Q 019059           40 EENEVHLLRLSSGGT------ELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERI  113 (346)
Q Consensus        40 ~~~~i~~~~~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~  113 (346)
                      .+|.+..+.++...+      ......+.+|...|.++++|.+...+++     +..+.+++|+..         +.+++
T Consensus       342 ~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~S-----ga~~SikiWn~~---------t~kci  407 (888)
T KOG0306|consen  342 ANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLAS-----GAGESIKIWNRD---------TLKCI  407 (888)
T ss_pred             ecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeee-----cCCCcEEEEEcc---------Cccee
Confidence            345555555554211      2223557799999999999987765555     466799999998         78999


Q ss_pred             eeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEE
Q 019059          114 AALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQ  193 (346)
Q Consensus       114 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  193 (346)
                      +++...  .+.+..|.|.+++ ++.+...|.+.+||+.........     ..|...+.+++.+||+..+++++.|.+|+
T Consensus       408 RTi~~~--y~l~~~Fvpgd~~-Iv~G~k~Gel~vfdlaS~~l~Eti-----~AHdgaIWsi~~~pD~~g~vT~saDktVk  479 (888)
T KOG0306|consen  408 RTITCG--YILASKFVPGDRY-IVLGTKNGELQVFDLASASLVETI-----RAHDGAIWSISLSPDNKGFVTGSADKTVK  479 (888)
T ss_pred             EEeccc--cEEEEEecCCCce-EEEeccCCceEEEEeehhhhhhhh-----hccccceeeeeecCCCCceEEecCCcEEE
Confidence            988543  7899999999886 777888999999999865533333     24777999999999999999999999999


Q ss_pred             EEEccC-----CCcc--------ceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEE
Q 019059          194 FWDLRS-----MGKT--------NSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVC  259 (346)
Q Consensus       194 i~d~~~-----~~~~--------~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~  259 (346)
                      +||..-     +...        +++.... |.|++++||+. +++++--|.+|++|-+.+.+ -...+.+|.-||.|+.
T Consensus       480 fWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk-~LaVsLLdnTVkVyflDtlK-FflsLYGHkLPV~smD  557 (888)
T KOG0306|consen  480 FWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK-LLAVSLLDNTVKVYFLDTLK-FFLSLYGHKLPVLSMD  557 (888)
T ss_pred             EEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc-EEEEEeccCeEEEEEeccee-eeeeecccccceeEEe
Confidence            999752     2111        2222222 99999999999 89999999999999999855 5667889999999999


Q ss_pred             eCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeE
Q 019059          260 CNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRV  339 (346)
Q Consensus       260 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v  339 (346)
                      .+|++ .+++|||.|..|+||-+.-                   +.+-+.+.+|...|.++.|.|... ++.++|.|+.|
T Consensus       558 IS~DS-klivTgSADKnVKiWGLdF-------------------GDCHKS~fAHdDSvm~V~F~P~~~-~FFt~gKD~kv  616 (888)
T KOG0306|consen  558 ISPDS-KLIVTGSADKNVKIWGLDF-------------------GDCHKSFFAHDDSVMSVQFLPKTH-LFFTCGKDGKV  616 (888)
T ss_pred             ccCCc-CeEEeccCCCceEEecccc-------------------chhhhhhhcccCceeEEEEcccce-eEEEecCcceE
Confidence            99999 9999999999999999998                   999999999999999999999875 99999999999


Q ss_pred             EEeeecC
Q 019059          340 RNHMLEK  346 (346)
Q Consensus       340 ~vw~~~~  346 (346)
                      +-||-++
T Consensus       617 KqWDg~k  623 (888)
T KOG0306|consen  617 KQWDGEK  623 (888)
T ss_pred             Eeechhh
Confidence            9998553

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=7.2e-28  Score=177.88  Aligned_cols=262  Identities=15%  Similarity=0.216  Sum_probs=198.4

Q ss_pred             CeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCccc------CCCCCccceeeeeeeccCCceEEEE
Q 019059           54 TELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELY------GQLNSPQLERIAALDAHVGKINCVL  127 (346)
Q Consensus        54 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~------~~~~~~~~~~~~~~~~~~~~i~~~~  127 (346)
                      +......+......|.+++|+|.|...++    |++..+++|...+...      +....|+....+.-+.|++.|+|.+
T Consensus        21 ~~f~~i~~l~dsqairav~fhp~g~lyav----gsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~   96 (350)
T KOG0641|consen   21 KHFEAINILEDSQAIRAVAFHPAGGLYAV----GSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTA   96 (350)
T ss_pred             cceEEEEEecchhheeeEEecCCCceEEe----ccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEE
Confidence            33444455556678999999999887766    4788889888665331      1122222333344457899999999


Q ss_pred             eecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCC----CCcEEEEe-cCCeEEEEEccCCCc
Q 019059          128 WWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPH----DVNAVAAT-CESSVQFWDLRSMGK  202 (346)
Q Consensus       128 ~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~-~d~~i~i~d~~~~~~  202 (346)
                      |+|+|. ++++++.|..|++..++.......-...+...|...|..++|..+    +..|++++ .|..|++-|-..++.
T Consensus        97 ws~~ge-liatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~  175 (350)
T KOG0641|consen   97 WSPCGE-LIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQG  175 (350)
T ss_pred             ecCccC-eEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCc
Confidence            999999 466668899999987765433322223334557778999999643    34455555 488899999999998


Q ss_pred             cceeeccc---eeEE-EeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecC--C-----CcceEEEEeCCCCCcEEEEe
Q 019059          203 TNSIEHAH---VRNV-DYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG--H-----THWTWAVCCNPEYDGFILSA  271 (346)
Q Consensus       203 ~~~~~~~~---v~~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~-----~~~v~~v~~~~~~~~~l~s~  271 (346)
                      ...+. +|   |.++ .|+  +- ++++|+.|.+|++||+|- ..++.++..  |     ...|.+++..|.| ++|++|
T Consensus       176 ~~a~s-ghtghilalyswn--~~-m~~sgsqdktirfwdlrv-~~~v~~l~~~~~~~glessavaav~vdpsg-rll~sg  249 (350)
T KOG0641|consen  176 FHALS-GHTGHILALYSWN--GA-MFASGSQDKTIRFWDLRV-NSCVNTLDNDFHDGGLESSAVAAVAVDPSG-RLLASG  249 (350)
T ss_pred             ceeec-CCcccEEEEEEec--Cc-EEEccCCCceEEEEeeec-cceeeeccCcccCCCcccceeEEEEECCCc-ceeeec
Confidence            88776 55   5554 443  43 899999999999999997 445665532  2     2578999999999 999999


Q ss_pred             cCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeecC
Q 019059          272 GTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLEK  346 (346)
Q Consensus       272 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~~  346 (346)
                      -.|.+..+||++.                   +..++.+..|+..|.++.|+|.. .++.+++.|..|++=|+++
T Consensus       250 ~~dssc~lydirg-------------------~r~iq~f~phsadir~vrfsp~a-~yllt~syd~~ikltdlqg  304 (350)
T KOG0641|consen  250 HADSSCMLYDIRG-------------------GRMIQRFHPHSADIRCVRFSPGA-HYLLTCSYDMKIKLTDLQG  304 (350)
T ss_pred             cCCCceEEEEeeC-------------------CceeeeeCCCccceeEEEeCCCc-eEEEEecccceEEEeeccc
Confidence            9999999999998                   89999999999999999999977 4999999999999999875

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=4e-30  Score=228.67  Aligned_cols=278  Identities=18%  Similarity=0.325  Sum_probs=224.0

Q ss_pred             CCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCc---eEEEEeecCCcceEEEEecCcccCCCCCccceeeeeee
Q 019059           41 ENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQR---IFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD  117 (346)
Q Consensus        41 ~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~---l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~  117 (346)
                      .-+++.+++.+....+....-..-...-+.++|.+.+..   |+++   |.+||.|.+||....   ..+.....+.+..
T Consensus        40 slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaG---G~edG~I~ly~p~~~---~~~~~~~~la~~~  113 (1049)
T KOG0307|consen   40 SLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAG---GLEDGNIVLYDPASI---IANASEEVLATKS  113 (1049)
T ss_pred             ccceeeecccCccccccccccccccccceeeeecccCCCccceeec---cccCCceEEecchhh---ccCcchHHHhhhc
Confidence            344555555555433333333344467889999998877   4665   689999999998732   1233456777888


Q ss_pred             ccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCc-EEEEecCCeEEEEE
Q 019059          118 AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVN-AVAATCESSVQFWD  196 (346)
Q Consensus       118 ~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~i~d  196 (346)
                      .|++.|..++|++....++++|+.||.|.|||+.+.+.......   ......|.+++|+..-.+ |++++.+|.+.|||
T Consensus       114 ~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~---~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWD  190 (1049)
T KOG0307|consen  114 KHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGS---QAPPSEIKCLSWNRKVSHILASGSPSGRAVIWD  190 (1049)
T ss_pred             ccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCC---CCCcccceEeccchhhhHHhhccCCCCCceecc
Confidence            99999999999999987677778899999999997554444332   224558999999987666 45556688999999


Q ss_pred             ccCCCccceeeccc----eeEEEeCCCCCcEEEEecCCC---eEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEE
Q 019059          197 LRSMGKTNSIEHAH----VRNVDYDTKKKHLLVTAADES---GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFIL  269 (346)
Q Consensus       197 ~~~~~~~~~~~~~~----v~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~  269 (346)
                      ++..+++..+....    +..++|+|++...++++++|.   .|.+||+|....+++++++|...|.++.|++.++.+|+
T Consensus       191 lr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lll  270 (1049)
T KOG0307|consen  191 LRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLL  270 (1049)
T ss_pred             ccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhh
Confidence            99988777665221    889999999987788877664   69999999988899999999999999999999989999


Q ss_pred             EecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeecC
Q 019059          270 SAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLEK  346 (346)
Q Consensus       270 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~~  346 (346)
                      +++.|+.|.+|+.++                   ++.+..+.....++..+.|+|..+.+++..+-||.|.||++++
T Consensus       271 SsgkD~~ii~wN~~t-------------------gEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~  328 (1049)
T KOG0307|consen  271 SSGKDNRIICWNPNT-------------------GEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG  328 (1049)
T ss_pred             cccCCCCeeEecCCC-------------------ceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence            999999999999999                   9999999988899999999999988999999999999999864

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=6.4e-29  Score=198.13  Aligned_cols=248  Identities=19%  Similarity=0.264  Sum_probs=200.0

Q ss_pred             eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEE
Q 019059           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV  138 (346)
Q Consensus        59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  138 (346)
                      ..+..|.++|+-+.||++|++|+++    +.|.+..+|.+..      ....+..+++.+|..+|..+.||||.++ +++
T Consensus       218 qil~~htdEVWfl~FS~nGkyLAsa----SkD~Taiiw~v~~------d~~~kl~~tlvgh~~~V~yi~wSPDdry-Lla  286 (519)
T KOG0293|consen  218 QILQDHTDEVWFLQFSHNGKYLASA----SKDSTAIIWIVVY------DVHFKLKKTLVGHSQPVSYIMWSPDDRY-LLA  286 (519)
T ss_pred             hhHhhCCCcEEEEEEcCCCeeEeec----cCCceEEEEEEec------CcceeeeeeeecccCceEEEEECCCCCe-EEe
Confidence            4567899999999999999999996    7999999999863      1135678899999999999999999997 677


Q ss_pred             EecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeec---cceeEEE
Q 019059          139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH---AHVRNVD  215 (346)
Q Consensus       139 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~v~~~~  215 (346)
                      ++.+..+.+||+.++.....+..    ++...+.+++|.||+..+++|+.|+++..||+.... ......   +.|.+++
T Consensus       287 Cg~~e~~~lwDv~tgd~~~~y~~----~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dla  361 (519)
T KOG0293|consen  287 CGFDEVLSLWDVDTGDLRHLYPS----GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLA  361 (519)
T ss_pred             cCchHheeeccCCcchhhhhccc----CcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEE
Confidence            77788899999998875444432    234488999999999999999999999999998543 333331   1299999


Q ss_pred             eCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccc
Q 019059          216 YDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESL  295 (346)
Q Consensus       216 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  295 (346)
                      ..+||. .+++...|..|++++... ..... +..-..+|+++..|.++ +++.+.=.+..+++||+..           
T Consensus       362 it~Dgk-~vl~v~~d~~i~l~~~e~-~~dr~-lise~~~its~~iS~d~-k~~LvnL~~qei~LWDl~e-----------  426 (519)
T KOG0293|consen  362 ITYDGK-YVLLVTVDKKIRLYNREA-RVDRG-LISEEQPITSFSISKDG-KLALVNLQDQEIHLWDLEE-----------  426 (519)
T ss_pred             EcCCCc-EEEEEecccceeeechhh-hhhhc-cccccCceeEEEEcCCC-cEEEEEcccCeeEEeecch-----------
Confidence            999999 566666899999999875 32232 33346799999999999 8999888999999999998           


Q ss_pred             cCCccccccccccccccccce--eeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          296 VESPNQRANSLLNSYSDYEDS--VYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                              ...+..+.||...  +-.-+|-.....++++||+|+.|+||+..
T Consensus       427 --------~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~  470 (519)
T KOG0293|consen  427 --------NKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRI  470 (519)
T ss_pred             --------hhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEcc
Confidence                    8889999998754  33445655444599999999999999854

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=5e-30  Score=201.19  Aligned_cols=241  Identities=20%  Similarity=0.273  Sum_probs=199.0

Q ss_pred             eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEE
Q 019059           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV  138 (346)
Q Consensus        59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  138 (346)
                      ..+.+|.+.|.+++=+|.....+++   |+.||.|++||+.         +..+..++..|.+.|..+++.. +.  +++
T Consensus        60 ~~L~gHrdGV~~lakhp~~ls~~aS---Gs~DG~VkiWnls---------qR~~~~~f~AH~G~V~Gi~v~~-~~--~~t  124 (433)
T KOG0268|consen   60 GSLDGHRDGVSCLAKHPNKLSTVAS---GSCDGEVKIWNLS---------QRECIRTFKAHEGLVRGICVTQ-TS--FFT  124 (433)
T ss_pred             hhccccccccchhhcCcchhhhhhc---cccCceEEEEehh---------hhhhhheeecccCceeeEEecc-cc--eEE
Confidence            4568999999999999977444444   6899999999999         7889999999999999999987 33  788


Q ss_pred             EecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc--eeEEEe
Q 019059          139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--VRNVDY  216 (346)
Q Consensus       139 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--v~~~~~  216 (346)
                      ++.|.+|+.|.++..  +......     ...+.++.-+..+..++++|.  .|.|||.+...++..+.-+.  +.++.|
T Consensus       125 vgdDKtvK~wk~~~~--p~~tilg-----~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkf  195 (433)
T KOG0268|consen  125 VGDDKTVKQWKIDGP--PLHTILG-----KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKF  195 (433)
T ss_pred             ecCCcceeeeeccCC--cceeeec-----cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEec
Confidence            889999999998752  2222211     124566665555555665553  59999999988998888666  999999


Q ss_pred             CCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCccccc
Q 019059          217 DTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLV  296 (346)
Q Consensus       217 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  296 (346)
                      +|....+|+++..|+.|.+||+|. ..|++.+. ....-+.|+|+|.. ..|.+|++|..++.||++.            
T Consensus       196 NpvETsILas~~sDrsIvLyD~R~-~~Pl~KVi-~~mRTN~IswnPea-fnF~~a~ED~nlY~~DmR~------------  260 (433)
T KOG0268|consen  196 NPVETSILASCASDRSIVLYDLRQ-ASPLKKVI-LTMRTNTICWNPEA-FNFVAANEDHNLYTYDMRN------------  260 (433)
T ss_pred             CCCcchheeeeccCCceEEEeccc-CCccceee-eeccccceecCccc-cceeeccccccceehhhhh------------
Confidence            999988999999999999999998 55776654 34556889999977 8899999999999999998            


Q ss_pred             CCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          297 ESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                            ...++..+.+|.+.|.+++|||.|+ -+++||.|.+||||.+.
T Consensus       261 ------l~~p~~v~~dhvsAV~dVdfsptG~-EfvsgsyDksIRIf~~~  302 (433)
T KOG0268|consen  261 ------LSRPLNVHKDHVSAVMDVDFSPTGQ-EFVSGSYDKSIRIFPVN  302 (433)
T ss_pred             ------hcccchhhcccceeEEEeccCCCcc-hhccccccceEEEeecC
Confidence                  4788899999999999999999998 89999999999999864

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=1.4e-28  Score=214.31  Aligned_cols=253  Identities=21%  Similarity=0.330  Sum_probs=211.4

Q ss_pred             CCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeecc
Q 019059           40 EENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH  119 (346)
Q Consensus        40 ~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~  119 (346)
                      .++.+.+|+...  .......+.+|.+.|+++++..-+..|++    |+.|.++++||..         ++++...+.+|
T Consensus       226 ~~~tl~~~~~~~--~~~i~~~l~GH~g~V~~l~~~~~~~~lvs----gS~D~t~rvWd~~---------sg~C~~~l~gh  290 (537)
T KOG0274|consen  226 DDSTLHLWDLNN--GYLILTRLVGHFGGVWGLAFPSGGDKLVS----GSTDKTERVWDCS---------TGECTHSLQGH  290 (537)
T ss_pred             CCceeEEeeccc--ceEEEeeccCCCCCceeEEEecCCCEEEE----EecCCcEEeEecC---------CCcEEEEecCC
Confidence            456676775555  34454559999999999999875556666    4789999999988         89999999999


Q ss_pred             CCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccC
Q 019059          120 VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRS  199 (346)
Q Consensus       120 ~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~  199 (346)
                      .+.|.++...+.   .++.++.|.+|++|++.++......     .+|..+|.++..+  +..+++++.|++|++||+.+
T Consensus       291 ~stv~~~~~~~~---~~~sgs~D~tVkVW~v~n~~~l~l~-----~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~  360 (537)
T KOG0274|consen  291 TSSVRCLTIDPF---LLVSGSRDNTVKVWDVTNGACLNLL-----RGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRT  360 (537)
T ss_pred             CceEEEEEccCc---eEeeccCCceEEEEeccCcceEEEe-----ccccccEEEEEec--CCEEEEEecCceEEEEEhhh
Confidence            999999987654   2555688999999999966533222     2377799999997  78899999999999999999


Q ss_pred             CCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCe
Q 019059          200 MGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDST  276 (346)
Q Consensus       200 ~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~  276 (346)
                      ++++..+. +|   |.++.+.+. . .+++|+.|++|++||+++..+++.++.+|..-+..+.+.  + ++|++++.|++
T Consensus       361 ~~cl~sl~-gH~~~V~sl~~~~~-~-~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~--~-~~Lvs~~aD~~  434 (537)
T KOG0274|consen  361 GKCLKSLS-GHTGRVYSLIVDSE-N-RLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLR--D-NFLVSSSADGT  434 (537)
T ss_pred             ceeeeeec-CCcceEEEEEecCc-c-eEEeeeeccceEeecCCchhhhhhhhcCCcccccccccc--c-ceeEecccccc
Confidence            99999998 57   999988876 4 799999999999999998437899999999999776654  4 78999999999


Q ss_pred             EEEEecCCCCCCCCCcccccCCcccccccccccccc-ccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          277 VNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD-YEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       277 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      |++||...                   ++++.++.+ |...|+.+++.  .. .+++.+.|+.+++||+.
T Consensus       435 Ik~WD~~~-------------------~~~~~~~~~~~~~~v~~l~~~--~~-~il~s~~~~~~~l~dl~  482 (537)
T KOG0274|consen  435 IKLWDAEE-------------------GECLRTLEGRHVGGVSALALG--KE-EILCSSDDGSVKLWDLR  482 (537)
T ss_pred             EEEeeccc-------------------CceeeeeccCCcccEEEeecC--cc-eEEEEecCCeeEEEecc
Confidence            99999998                   899999988 66789988887  22 68889999999999985

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.97  E-value=8.5e-29  Score=194.40  Aligned_cols=243  Identities=16%  Similarity=0.314  Sum_probs=192.0

Q ss_pred             EeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEE
Q 019059           58 CEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKL  137 (346)
Q Consensus        58 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  137 (346)
                      ...+..|.+.|.+++.+| ...++++   ||.|....||++.         ++.....+.+|++.|.++.|+.+|.+ ++
T Consensus        57 ~~tF~~H~~svFavsl~P-~~~l~aT---GGgDD~AflW~~~---------~ge~~~eltgHKDSVt~~~Fshdgtl-LA  122 (399)
T KOG0296|consen   57 LVTFDKHTDSVFAVSLHP-NNNLVAT---GGGDDLAFLWDIS---------TGEFAGELTGHKDSVTCCSFSHDGTL-LA  122 (399)
T ss_pred             eeehhhcCCceEEEEeCC-CCceEEe---cCCCceEEEEEcc---------CCcceeEecCCCCceEEEEEccCceE-EE
Confidence            367788999999999999 4455555   6888899999998         67788899999999999999999993 55


Q ss_pred             EEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEE
Q 019059          138 VSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNV  214 (346)
Q Consensus       138 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~  214 (346)
                      ++.-+|.|+||+..++.....+..     ....+.-+.|+|.+..+++|+.||.+-+|.+.++...+.+. +|   +++=
T Consensus       123 TGdmsG~v~v~~~stg~~~~~~~~-----e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~-Gh~~~ct~G  196 (399)
T KOG0296|consen  123 TGDMSGKVLVFKVSTGGEQWKLDQ-----EVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMS-GHNSPCTCG  196 (399)
T ss_pred             ecCCCccEEEEEcccCceEEEeec-----ccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEec-CCCCCcccc
Confidence            556799999999998776555541     23378888999999999999999999999999876655555 66   9999


Q ss_pred             EeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecC--------------------------------------------
Q 019059          215 DYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG--------------------------------------------  250 (346)
Q Consensus       215 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--------------------------------------------  250 (346)
                      .|.|+|+ .++++..||+|++|++.+ .+|+..+..                                            
T Consensus       197 ~f~pdGK-r~~tgy~dgti~~Wn~kt-g~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~  274 (399)
T KOG0296|consen  197 EFIPDGK-RILTGYDDGTIIVWNPKT-GQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGT  274 (399)
T ss_pred             cccCCCc-eEEEEecCceEEEEecCC-CceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCC
Confidence            9999998 899999999999999987 445544431                                            


Q ss_pred             -------CCcceEEEEe---CCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEE
Q 019059          251 -------HTHWTWAVCC---NPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGL  320 (346)
Q Consensus       251 -------~~~~v~~v~~---~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  320 (346)
                             +...+.+|.+   +..- .+.|+|+.||+|.|||+..                   ..+.+ .-.|..+|..+
T Consensus       275 ~~~l~~~~e~~~esve~~~~ss~l-pL~A~G~vdG~i~iyD~a~-------------------~~~R~-~c~he~~V~~l  333 (399)
T KOG0296|consen  275 VPELKPSQEELDESVESIPSSSKL-PLAACGSVDGTIAIYDLAA-------------------STLRH-ICEHEDGVTKL  333 (399)
T ss_pred             Cccccccchhhhhhhhhccccccc-chhhcccccceEEEEeccc-------------------chhhe-eccCCCceEEE
Confidence                   1111222222   2233 5678899999999999987                   44443 44688889999


Q ss_pred             EeCCCCCcEEEEeecCCeEEEeeec
Q 019059          321 AWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       321 ~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      .|-+ .. +|++++.+|.|+.||..
T Consensus       334 ~w~~-t~-~l~t~c~~g~v~~wDaR  356 (399)
T KOG0296|consen  334 KWLN-TD-YLLTACANGKVRQWDAR  356 (399)
T ss_pred             EEcC-cc-hheeeccCceEEeeecc
Confidence            9999 44 78899999999999964

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.97  E-value=1e-27  Score=183.14  Aligned_cols=307  Identities=16%  Similarity=0.249  Sum_probs=228.9

Q ss_pred             eeecccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCC----CceEEE
Q 019059            8 IGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFD----QRIFST   83 (346)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----~~l~~~   83 (346)
                      +-|.-.++.-++.|........|+++|++.-...|.|.++.+..+...+....-+.|+-+++.+.|.|+.    +.|+++
T Consensus        39 y~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLAT  118 (364)
T KOG0290|consen   39 YTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLAT  118 (364)
T ss_pred             EEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhc
Confidence            3445555556666776666789999999988888999999999988888877778999999999999975    356664


Q ss_pred             EeecCCcceEEEEecCcccCCCCCccceeeeee-----eccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCce
Q 019059           84 VFSTGESYGAAIWQIPELYGQLNSPQLERIAAL-----DAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQ  158 (346)
Q Consensus        84 ~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~  158 (346)
                           .+..+++|.+.....     ...+...+     ..+..++++..|+.-...++.+++-|.+..|||++++..  .
T Consensus       119 -----s~D~LRlWri~~ee~-----~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~--~  186 (364)
T KOG0290|consen  119 -----SSDFLRLWRIGDEES-----RVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS--G  186 (364)
T ss_pred             -----ccCeEEEEeccCcCC-----ceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccc--c
Confidence                 334899999873211     11221122     234678999999998888777778899999999998622  1


Q ss_pred             eeecccCCCceeeEEEEeCCCCCc-EEEEecCCeEEEEEccCCCccceeecc---c--eeEEEeCCCCCcEEEEecCC-C
Q 019059          159 VQSKQSSGMLHYLSGGAWDPHDVN-AVAATCESSVQFWDLRSMGKTNSIEHA---H--VRNVDYDTKKKHLLVTAADE-S  231 (346)
Q Consensus       159 ~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~---~--v~~~~~~~~~~~~l~~~~~d-g  231 (346)
                      ......-.|..+|+.++|...+.. +++.+.||.+|++|+|..+....+...   +  ...++|+++..+++++-..| .
T Consensus       187 ~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~  266 (364)
T KOG0290|consen  187 TVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSN  266 (364)
T ss_pred             ceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCc
Confidence            111122347779999999986654 667788999999999987654444322   2  88999999998888876554 5


Q ss_pred             eEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccc
Q 019059          232 GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYS  311 (346)
Q Consensus       232 ~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (346)
                      .|.+.|+|.+..++..+++|.+.|+.++|.|.....|++++.|.++.|||+..-..             .....++..+.
T Consensus       267 ~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~-------------~~~~dPilay~  333 (364)
T KOG0290|consen  267 KVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR-------------ENGEDPILAYT  333 (364)
T ss_pred             eEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccc-------------cCCCCchhhhh
Confidence            79999999999999999999999999999999989999999999999999987211             01123333343


Q ss_pred             cccceeeEEEeCCCCCcEEEEeecCCeEEE
Q 019059          312 DYEDSVYGLAWSSREPWIFASLSYDGRVRN  341 (346)
Q Consensus       312 ~~~~~v~~~~~~~~~~~~l~s~~~d~~v~v  341 (346)
                       -.+.|..+.|+|..+..++.+. ++.+.+
T Consensus       334 -a~~EVNqi~Ws~~~~Dwiai~~-~kklei  361 (364)
T KOG0290|consen  334 -AGGEVNQIQWSSSQPDWIAICF-GKKLEI  361 (364)
T ss_pred             -ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence             3456999999986655666655 444444

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=3.7e-28  Score=194.87  Aligned_cols=236  Identities=19%  Similarity=0.274  Sum_probs=198.9

Q ss_pred             cceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeE
Q 019059           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENI  145 (346)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i  145 (346)
                      ..+.++...|....+++    ||.|..+.++|.+         ..+.+..+++|.-.|+.+.++++... +++++.|..|
T Consensus       220 pgi~ald~~~s~~~ilT----GG~d~~av~~d~~---------s~q~l~~~~Gh~kki~~v~~~~~~~~-v~~aSad~~i  285 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILT----GGEDKTAVLFDKP---------SNQILATLKGHTKKITSVKFHKDLDT-VITASADEII  285 (506)
T ss_pred             CCeeEEeecCCCCccee----cCCCCceEEEecc---------hhhhhhhccCcceEEEEEEeccchhh-eeecCCcceE
Confidence            46788888887566666    6899999999988         77899999999999999999999884 6666779999


Q ss_pred             EEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeecc-c---eeEEEeCCCCC
Q 019059          146 FLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA-H---VRNVDYDTKKK  221 (346)
Q Consensus       146 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~---v~~~~~~~~~~  221 (346)
                      ++|...........     ..|..+|+.+..+|.+.++++++.|++..+.|++++..+...... .   +++.+|+|||-
T Consensus       286 ~vws~~~~s~~~~~-----~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL  360 (506)
T KOG0289|consen  286 RVWSVPLSSEPTSS-----RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL  360 (506)
T ss_pred             EeeccccccCcccc-----ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce
Confidence            99998765533322     236669999999999999999999999999999999987766642 2   99999999997


Q ss_pred             cEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccc
Q 019059          222 HLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQ  301 (346)
Q Consensus       222 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  301 (346)
                       +|.+|..|+.|++||+.+.. .+..|.+|.++|..++|+.+| .+|+++.+|+.|++||+|.                 
T Consensus       361 -ifgtgt~d~~vkiwdlks~~-~~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRK-----------------  420 (506)
T KOG0289|consen  361 -IFGTGTPDGVVKIWDLKSQT-NVAKFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRK-----------------  420 (506)
T ss_pred             -EEeccCCCceEEEEEcCCcc-ccccCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehh-----------------
Confidence             99999999999999999844 788899999999999999999 9999999999999999998                 


Q ss_pred             ccccccccccccc-ceeeEEEeCCCCCcEEEEeecCCeEEEee
Q 019059          302 RANSLLNSYSDYE-DSVYGLAWSSREPWIFASLSYDGRVRNHM  343 (346)
Q Consensus       302 ~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~d~~v~vw~  343 (346)
                        .+...++.-.. ..|.++.|.+.|. +|+.++.|=+|+++.
T Consensus       421 --l~n~kt~~l~~~~~v~s~~fD~SGt-~L~~~g~~l~Vy~~~  460 (506)
T KOG0289|consen  421 --LKNFKTIQLDEKKEVNSLSFDQSGT-YLGIAGSDLQVYICK  460 (506)
T ss_pred             --hcccceeeccccccceeEEEcCCCC-eEEeecceeEEEEEe
Confidence              45555554322 3699999999997 788887776666654

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=5.1e-29  Score=212.98  Aligned_cols=241  Identities=17%  Similarity=0.274  Sum_probs=192.3

Q ss_pred             ceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEE
Q 019059           67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIF  146 (346)
Q Consensus        67 ~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~  146 (346)
                      .+.++.|......+++++   +..|.|.+||+...      ...+.+..+..|+..+++++|++...+++++|+.||.|+
T Consensus        89 S~~DVkW~~~~~NlIAT~---s~nG~i~vWdlnk~------~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK  159 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATC---STNGVISVWDLNKS------IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVK  159 (839)
T ss_pred             ehhhcccccchhhhheee---cCCCcEEEEecCcc------ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEE
Confidence            466788987666777764   78899999999821      123555678899999999999999999999999999999


Q ss_pred             EEEcCCCCCCceeeecccCCCceeeEEEEeCCCCC-cEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCc
Q 019059          147 LWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDV-NAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKH  222 (346)
Q Consensus       147 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~  222 (346)
                      +||++..........     ....|..++|+|... .++++...|.+++||+|..........+|   |.|+.|+|++. 
T Consensus       160 ~~DlR~~~S~~t~~~-----nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~-  233 (839)
T KOG0269|consen  160 CWDLRSKKSKSTFRS-----NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNRE-  233 (839)
T ss_pred             EEeeecccccccccc-----cchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCc-
Confidence            999997665444433     344899999999654 46666678999999999876443333366   99999999887 


Q ss_pred             EEEEecCCCeEEEEEcccCC-cceeeecCCCcceEEEEeCCCCCcEEEEecC--CCeEEEEecCCCCCCCCCcccccCCc
Q 019059          223 LLVTAADESGIHLWDLRMLK-APIQELPGHTHWTWAVCCNPEYDGFILSAGT--DSTVNLWLVSTSNHDELPSESLVESP  299 (346)
Q Consensus       223 ~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~  299 (346)
                      +||+|+.|+.|+|||+.... .++.++. ...+|.+|+|-|..+..||+++.  |-.|+|||++.               
T Consensus       234 ~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR---------------  297 (839)
T KOG0269|consen  234 WLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRR---------------  297 (839)
T ss_pred             eeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeecc---------------
Confidence            99999999999999988533 2444443 46789999999999788888775  77999999997               


Q ss_pred             cccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEE
Q 019059          300 NQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRN  341 (346)
Q Consensus       300 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~v  341 (346)
                         ..-+..++..|...++.++|.......+.+++.|++|..
T Consensus       298 ---PYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~q  336 (839)
T KOG0269|consen  298 ---PYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQ  336 (839)
T ss_pred             ---ccccceeeeccCccccceeccCCCceeeEeecCccHHHH
Confidence               356778899999999999998755568899999998753

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.1e-26  Score=179.67  Aligned_cols=278  Identities=16%  Similarity=0.202  Sum_probs=217.0

Q ss_pred             eeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEE
Q 019059           16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAI   95 (346)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~v   95 (346)
                      ...+.++.++.++..+++.    .++..+.+++.....   ..+.+..++-.|..++|-.....++.+.  ...|.+|+.
T Consensus        14 ~~~i~sl~fs~~G~~lits----s~dDsl~LYd~~~g~---~~~ti~skkyG~~~~~Fth~~~~~i~sS--tk~d~tIry   84 (311)
T KOG1446|consen   14 NGKINSLDFSDDGLLLITS----SEDDSLRLYDSLSGK---QVKTINSKKYGVDLACFTHHSNTVIHSS--TKEDDTIRY   84 (311)
T ss_pred             CCceeEEEecCCCCEEEEe----cCCCeEEEEEcCCCc---eeeEeecccccccEEEEecCCceEEEcc--CCCCCceEE
Confidence            4567788889999888885    366788888877653   3355556667888999976666666542  245889999


Q ss_pred             EecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEE
Q 019059           96 WQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGA  175 (346)
Q Consensus        96 w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~  175 (346)
                      -++.         +.+.++.+.+|...|..++.+|-+. .+++++.|++|++||++..+....+...       .-..++
T Consensus        85 Lsl~---------dNkylRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~cqg~l~~~-------~~pi~A  147 (311)
T KOG1446|consen   85 LSLH---------DNKYLRYFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKKCQGLLNLS-------GRPIAA  147 (311)
T ss_pred             EEee---------cCceEEEcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCCCceEEecC-------CCccee
Confidence            9998         7799999999999999999999987 4888899999999999965544333321       334568


Q ss_pred             eCCCCCcEEEEecCCeEEEEEccCC--Cccceeecc---c--eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeee
Q 019059          176 WDPHDVNAVAATCESSVQFWDLRSM--GKTNSIEHA---H--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL  248 (346)
Q Consensus       176 ~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~---~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  248 (346)
                      |.|+|-.+|++.....|++||+|.-  .+..++...   +  .+.|.|+|+|+ .++.+...+.+++.|.-. +....++
T Consensus       148 fDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK-~iLlsT~~s~~~~lDAf~-G~~~~tf  225 (311)
T KOG1446|consen  148 FDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGK-SILLSTNASFIYLLDAFD-GTVKSTF  225 (311)
T ss_pred             ECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCC-EEEEEeCCCcEEEEEccC-CcEeeeE
Confidence            9999988888887779999999964  344444433   2  99999999999 566667778999999887 5577777


Q ss_pred             cCCCcce---EEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccccc-ccceeeEEEeCC
Q 019059          249 PGHTHWT---WAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD-YEDSVYGLAWSS  324 (346)
Q Consensus       249 ~~~~~~v---~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~  324 (346)
                      ..+...-   ....|+|++ +++++|+.||+|.+|++++                   +..+..+.+ +.+++.++.|+|
T Consensus       226 s~~~~~~~~~~~a~ftPds-~Fvl~gs~dg~i~vw~~~t-------------------g~~v~~~~~~~~~~~~~~~fnP  285 (311)
T KOG1446|consen  226 SGYPNAGNLPLSATFTPDS-KFVLSGSDDGTIHVWNLET-------------------GKKVAVLRGPNGGPVSCVRFNP  285 (311)
T ss_pred             eeccCCCCcceeEEECCCC-cEEEEecCCCcEEEEEcCC-------------------CcEeeEecCCCCCCccccccCC
Confidence            7665433   567899999 9999999999999999998                   888888888 688899999999


Q ss_pred             CCCcEEEEeecCCeEEEeee
Q 019059          325 REPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       325 ~~~~~l~s~~~d~~v~vw~~  344 (346)
                      .-. +++++  +..+.+|-.
T Consensus       286 ~~~-mf~sa--~s~l~fw~p  302 (311)
T KOG1446|consen  286 RYA-MFVSA--SSNLVFWLP  302 (311)
T ss_pred             cee-eeeec--CceEEEEec
Confidence            764 55544  467777754

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=1.1e-28  Score=191.44  Aligned_cols=253  Identities=10%  Similarity=0.127  Sum_probs=206.0

Q ss_pred             eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEE
Q 019059           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV  138 (346)
Q Consensus        59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  138 (346)
                      ...++...-+.|..|+||+++|++    |+.||-|.|||.....-.+ .-..+....+.-++.+|.|++|+.|.. .+++
T Consensus       207 ~IKFg~KSh~EcA~FSPDgqyLvs----gSvDGFiEVWny~~GKlrK-DLkYQAqd~fMMmd~aVlci~FSRDsE-MlAs  280 (508)
T KOG0275|consen  207 SIKFGQKSHVECARFSPDGQYLVS----GSVDGFIEVWNYTTGKLRK-DLKYQAQDNFMMMDDAVLCISFSRDSE-MLAS  280 (508)
T ss_pred             heecccccchhheeeCCCCceEee----ccccceeeeehhccchhhh-hhhhhhhcceeecccceEEEeecccHH-Hhhc
Confidence            335667788899999999999998    5899999999987211000 001122223445788999999999988 4666


Q ss_pred             EecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEE
Q 019059          139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVD  215 (346)
Q Consensus       139 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~  215 (346)
                      ++.||.|++|.+.++.+..++..    .|...|+++.|+.|+..+++++.|.++++.-+.+|++++.+. +|   |+...
T Consensus       281 GsqDGkIKvWri~tG~ClRrFdr----AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr-GHsSyvn~a~  355 (508)
T KOG0275|consen  281 GSQDGKIKVWRIETGQCLRRFDR----AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR-GHSSYVNEAT  355 (508)
T ss_pred             cCcCCcEEEEEEecchHHHHhhh----hhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhc-CccccccceE
Confidence            68899999999999887666543    467789999999999999999999999999999999999998 77   99999


Q ss_pred             eCCCCCcEEEEecCCCeEEEEEcccCCcceeeecC--CCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcc
Q 019059          216 YDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG--HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSE  293 (346)
Q Consensus       216 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  293 (346)
                      |.++|. .+++++.||+|++|+.++ ..++.+++.  ...+|+++-.-|.++..++.+...++|.|.+++          
T Consensus       356 ft~dG~-~iisaSsDgtvkvW~~Kt-teC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q----------  423 (508)
T KOG0275|consen  356 FTDDGH-HIISASSDGTVKVWHGKT-TECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ----------  423 (508)
T ss_pred             EcCCCC-eEEEecCCccEEEecCcc-hhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc----------
Confidence            999998 899999999999999997 667877764  446789999999888999999999999999998          


Q ss_pred             cccCCccccccccccccccc---cceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          294 SLVESPNQRANSLLNSYSDY---EDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                                ++.+..+...   .+...+...+|.|. .+...++|+.++.|.+.
T Consensus       424 ----------GQvVrsfsSGkREgGdFi~~~lSpkGe-wiYcigED~vlYCF~~~  467 (508)
T KOG0275|consen  424 ----------GQVVRSFSSGKREGGDFINAILSPKGE-WIYCIGEDGVLYCFSVL  467 (508)
T ss_pred             ----------ceEEeeeccCCccCCceEEEEecCCCc-EEEEEccCcEEEEEEee
Confidence                      4777666532   23456778999998 67788899999988763

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=2.6e-27  Score=181.76  Aligned_cols=269  Identities=17%  Similarity=0.235  Sum_probs=208.4

Q ss_pred             eeeEeeeccCCCCcceEE-EeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceE
Q 019059           15 QARCISDVKADTDHTSFL-TGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGA   93 (346)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i   93 (346)
                      +...|..+.++|...-++ .|    +-++.|++|++...+ ....+....|.++|.+++|+.+|..++++    +.|+.+
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~----SWD~tVR~wevq~~g-~~~~ka~~~~~~PvL~v~WsddgskVf~g----~~Dk~~   96 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAG----SWDGTVRIWEVQNSG-QLVPKAQQSHDGPVLDVCWSDDGSKVFSG----GCDKQA   96 (347)
T ss_pred             cccchheeEeccccCceEEec----ccCCceEEEEEecCC-cccchhhhccCCCeEEEEEccCCceEEee----ccCCce
Confidence            345677888888554444 44    358999999999873 34447778899999999999999888874    799999


Q ss_pred             EEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCC-cEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeE
Q 019059           94 AIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRH-DKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLS  172 (346)
Q Consensus        94 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~  172 (346)
                      ++||+.         +. .+..+..|.++|.++.|-+...+ +++++++|.+|+.||.+.......+...+      .++
T Consensus        97 k~wDL~---------S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe------RvY  160 (347)
T KOG0647|consen   97 KLWDLA---------SG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE------RVY  160 (347)
T ss_pred             EEEEcc---------CC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc------eee
Confidence            999998         45 44566799999999999876553 46667999999999999766555554433      666


Q ss_pred             EEEeCCCCCcEEEEecCCeEEEEEccCCCccc-eeec--cc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCC-cceee
Q 019059          173 GGAWDPHDVNAVAATCESSVQFWDLRSMGKTN-SIEH--AH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK-APIQE  247 (346)
Q Consensus       173 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~--~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~  247 (346)
                      ++..-  ...++++..+..|.+|+++.+.... .+..  .. ++||+..++.+ ..+.|+-+|.+.+..+.... ..-.+
T Consensus       161 a~Dv~--~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~-~~alGsiEGrv~iq~id~~~~~~nFt  237 (347)
T KOG0647|consen  161 AADVL--YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKD-GFALGSIEGRVAIQYIDDPNPKDNFT  237 (347)
T ss_pred             ehhcc--CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCC-ceEeeeecceEEEEecCCCCccCcee
Confidence            66543  4678888889999999998765332 2221  11 99999999988 67999999999999887632 22334


Q ss_pred             ecCCC---------cceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceee
Q 019059          248 LPGHT---------HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVY  318 (346)
Q Consensus       248 ~~~~~---------~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  318 (346)
                      |+.|.         ..|++|+|+|.. ..|+|++.||++.+||-..                   ...++....|..+|+
T Consensus       238 FkCHR~~~~~~~~VYaVNsi~FhP~h-gtlvTaGsDGtf~FWDkda-------------------r~kLk~s~~~~qpIt  297 (347)
T KOG0647|consen  238 FKCHRSTNSVNDDVYAVNSIAFHPVH-GTLVTAGSDGTFSFWDKDA-------------------RTKLKTSETHPQPIT  297 (347)
T ss_pred             EEEeccCCCCCCceEEecceEeeccc-ceEEEecCCceEEEecchh-------------------hhhhhccCcCCCccc
Confidence            45454         257889999988 8999999999999999987                   777888888999999


Q ss_pred             EEEeCCCCCcEEEE
Q 019059          319 GLAWSSREPWIFAS  332 (346)
Q Consensus       319 ~~~~~~~~~~~l~s  332 (346)
                      +.+|+.+|. ++|-
T Consensus       298 cc~fn~~G~-ifaY  310 (347)
T KOG0647|consen  298 CCSFNRNGS-IFAY  310 (347)
T ss_pred             eeEecCCCC-EEEE
Confidence            999999998 5543

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.2e-28  Score=207.05  Aligned_cols=286  Identities=16%  Similarity=0.286  Sum_probs=220.6

Q ss_pred             eccCCCCcce-EEEeecccCCCCeEEEEEecCCCCe---EEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEE
Q 019059           21 DVKADTDHTS-FLTGTLSLKEENEVHLLRLSSGGTE---LICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIW   96 (346)
Q Consensus        21 ~~~~~~~~~~-~~~g~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw   96 (346)
                      .+..+....+ |..|    +.++.|.+|.+......   .....+..|.+.|+++....+++.|+++    +.|.+|++|
T Consensus        29 ~Lq~da~~~ryLfTg----GRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~----SsDtTVK~W  100 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTG----GRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISA----SSDTTVKVW  100 (735)
T ss_pred             hccccCCCCceEEec----CCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEe----cCCceEEEe
Confidence            3444444555 4443    67899999998876542   2245677899999999999999999886    799999999


Q ss_pred             ecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCC-----CceeeecccC-CCcee
Q 019059           97 QIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNK-----NAQVQSKQSS-GMLHY  170 (346)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~-----~~~~~~~~~~-~~~~~  170 (346)
                      +...       ...-++.++..|++-|.|+++-.....+++++|-|+.|.+||++++..     .......... ++...
T Consensus       101 ~~~~-------~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~s  173 (735)
T KOG0308|consen  101 NAHK-------DNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDS  173 (735)
T ss_pred             eccc-------CcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccc
Confidence            9872       112577788999999999999444444566668899999999997632     1111112222 77889


Q ss_pred             eEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceee
Q 019059          171 LSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQE  247 (346)
Q Consensus       171 v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  247 (346)
                      +++++.++.+..+++|+..+.|++||.++.+.+..+. +|   |+.+..+++|. .+++++.||+|++||+.. .+++.+
T Consensus       174 iYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLr-GHTdNVr~ll~~dDGt-~~ls~sSDgtIrlWdLgq-QrCl~T  250 (735)
T KOG0308|consen  174 IYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR-GHTDNVRVLLVNDDGT-RLLSASSDGTIRLWDLGQ-QRCLAT  250 (735)
T ss_pred             eeeeecCCcceEEEecCcccceEEeccccccceeeee-ccccceEEEEEcCCCC-eEeecCCCceEEeeeccc-cceeee
Confidence            9999999999888999999999999999999999998 88   99999999998 899999999999999998 668999


Q ss_pred             ecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCC
Q 019059          248 LPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREP  327 (346)
Q Consensus       248 ~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  327 (346)
                      +..|...|+++..+|+- ..+++|+.|+.|..=|++.                   ......+-....+|..+..+.+..
T Consensus       251 ~~vH~e~VWaL~~~~sf-~~vYsG~rd~~i~~Tdl~n-------------------~~~~tlick~daPv~~l~~~~~~~  310 (735)
T KOG0308|consen  251 YIVHKEGVWALQSSPSF-THVYSGGRDGNIYRTDLRN-------------------PAKSTLICKEDAPVLKLHLHEHDN  310 (735)
T ss_pred             EEeccCceEEEeeCCCc-ceEEecCCCCcEEecccCC-------------------chhheEeecCCCchhhhhhccccC
Confidence            99999999999999998 9999999999999999987                   222222222334566666654333


Q ss_pred             cEEEEeecCCeEEEeeec
Q 019059          328 WIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       328 ~~l~s~~~d~~v~vw~~~  345 (346)
                       -+-++..|+.|+-|.++
T Consensus       311 -~~WvtTtds~I~rW~~~  327 (735)
T KOG0308|consen  311 -SVWVTTTDSSIKRWKLE  327 (735)
T ss_pred             -CceeeeccccceecCCc
Confidence             23455667777777543

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=4.2e-28  Score=180.83  Aligned_cols=253  Identities=21%  Similarity=0.328  Sum_probs=195.1

Q ss_pred             eeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeec--CCCCcEEE
Q 019059           61 LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWS--SGRHDKLV  138 (346)
Q Consensus        61 ~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~  138 (346)
                      ...|.+.|.++...-.|++|+++    ++|++|+|+..+.      +...+++.++.+|.++|..++|..  .|. ++++
T Consensus         7 dt~H~D~IHda~lDyygkrlATc----sSD~tVkIf~v~~------n~~s~ll~~L~Gh~GPVwqv~wahPk~G~-iLAS   75 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATC----SSDGTVKIFEVRN------NGQSKLLAELTGHSGPVWKVAWAHPKFGT-ILAS   75 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeee----cCCccEEEEEEcC------CCCceeeeEecCCCCCeeEEeecccccCc-EeeE
Confidence            34688999998888789999886    6999999999983      122478889999999999999975  565 4566


Q ss_pred             EecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCC--CcEEEEecCCeEEEEEccCC--Cccceeeccc---e
Q 019059          139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD--VNAVAATCESSVQFWDLRSM--GKTNSIEHAH---V  211 (346)
Q Consensus       139 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~---v  211 (346)
                      ++.||.|.||.-+++. ..+  ......|...|++++|.|.+  -.|++++.||.|.+.+.+..  -....+...|   |
T Consensus        76 csYDgkVIiWke~~g~-w~k--~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~Gv  152 (299)
T KOG1332|consen   76 CSYDGKVIIWKEENGR-WTK--AYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGV  152 (299)
T ss_pred             eecCceEEEEecCCCc-hhh--hhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccccc
Confidence            6889999999987663 222  23345688899999999864  55788889999999988754  2334444566   9


Q ss_pred             eEEEeCCC---C----------CcEEEEecCCCeEEEEEcccCC-cceeeecCCCcceEEEEeCCCC---CcEEEEecCC
Q 019059          212 RNVDYDTK---K----------KHLLVTAADESGIHLWDLRMLK-APIQELPGHTHWTWAVCCNPEY---DGFILSAGTD  274 (346)
Q Consensus       212 ~~~~~~~~---~----------~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~v~~~~~~---~~~l~s~~~d  274 (346)
                      ++++|.|.   |          .+.|++|+.|..|+||+..+.. ..-+++.+|...|+.++|.|.-   ..+||+++.|
T Consensus       153 nsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqD  232 (299)
T KOG1332|consen  153 NSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQD  232 (299)
T ss_pred             ceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCC
Confidence            99999986   3          1259999999999999988632 2334588999999999999964   3689999999


Q ss_pred             CeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059          275 STVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       275 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~  344 (346)
                      |++.||..+. +.++            -..+++.   .....++.+.||+.|. +|+.++.|+.|.+|.-
T Consensus       233 g~viIwt~~~-e~e~------------wk~tll~---~f~~~~w~vSWS~sGn-~LaVs~GdNkvtlwke  285 (299)
T KOG1332|consen  233 GTVIIWTKDE-EYEP------------WKKTLLE---EFPDVVWRVSWSLSGN-ILAVSGGDNKVTLWKE  285 (299)
T ss_pred             CcEEEEEecC-ccCc------------ccccccc---cCCcceEEEEEecccc-EEEEecCCcEEEEEEe
Confidence            9999998774 1000            0022333   3456799999999997 8999999999999953

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.96  E-value=3.8e-28  Score=198.41  Aligned_cols=264  Identities=16%  Similarity=0.179  Sum_probs=215.4

Q ss_pred             CCCeEEEEEecCCCCeEEEeee--eccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeee
Q 019059           40 EENEVHLLRLSSGGTELICEGL--FSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD  117 (346)
Q Consensus        40 ~~~~i~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~  117 (346)
                      ..+-|.+|++...+.+.....+  .....-|.++..+||++.|++    ||.-.++.|||+..       ++......+.
T Consensus       438 GkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLiv----GGeastlsiWDLAa-------pTprikaelt  506 (705)
T KOG0639|consen  438 GKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIV----GGEASTLSIWDLAA-------PTPRIKAELT  506 (705)
T ss_pred             CCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEe----ccccceeeeeeccC-------CCcchhhhcC
Confidence            3567899999865443333332  234478999999999999999    47888999999983       3444444555


Q ss_pred             ccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEc
Q 019059          118 AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDL  197 (346)
Q Consensus       118 ~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~  197 (346)
                      ...-...+++.+||.+ +.++++.||.|.|||+.+..     ....+.+|...+.++..+++|..|-+|+-|++|+.||+
T Consensus       507 ssapaCyALa~spDak-vcFsccsdGnI~vwDLhnq~-----~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDl  580 (705)
T KOG0639|consen  507 SSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQT-----LVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDL  580 (705)
T ss_pred             CcchhhhhhhcCCccc-eeeeeccCCcEEEEEcccce-----eeecccCCCCCceeEEecCCCceeecCCCccceeehhh
Confidence            5455678899999998 57777889999999998533     33445678889999999999999999999999999999


Q ss_pred             cCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCe
Q 019059          198 RSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDST  276 (346)
Q Consensus       198 ~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~  276 (346)
                      ++++.+....... |.++.++|.++ ++++|.+++.+.+.....  .....+..|+..|.++.|.+.| +++++.+.|+.
T Consensus       581 regrqlqqhdF~SQIfSLg~cP~~d-WlavGMens~vevlh~sk--p~kyqlhlheScVLSlKFa~cG-kwfvStGkDnl  656 (705)
T KOG0639|consen  581 REGRQLQQHDFSSQIFSLGYCPTGD-WLAVGMENSNVEVLHTSK--PEKYQLHLHESCVLSLKFAYCG-KWFVSTGKDNL  656 (705)
T ss_pred             hhhhhhhhhhhhhhheecccCCCcc-ceeeecccCcEEEEecCC--ccceeecccccEEEEEEecccC-ceeeecCchhh
Confidence            9998776554334 99999999999 899999999998888764  3456677799999999999999 99999999999


Q ss_pred             EEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          277 VNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       277 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      +..|.+..                   +..++..+.. +.|.+.+.+.+++ ++++|+.|....||.+.
T Consensus       657 LnawrtPy-------------------GasiFqskE~-SsVlsCDIS~ddk-yIVTGSGdkkATVYeV~  704 (705)
T KOG0639|consen  657 LNAWRTPY-------------------GASIFQSKES-SSVLSCDISFDDK-YIVTGSGDKKATVYEVI  704 (705)
T ss_pred             hhhccCcc-------------------ccceeecccc-CcceeeeeccCce-EEEecCCCcceEEEEEe
Confidence            99999988                   7778777654 4599999999987 99999999999998763

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.96  E-value=6.2e-29  Score=185.90  Aligned_cols=201  Identities=19%  Similarity=0.320  Sum_probs=173.3

Q ss_pred             eeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEe
Q 019059           61 LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI  140 (346)
Q Consensus        61 ~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  140 (346)
                      .+.|..-|.+++|+.|..+|++    ||.+..++|+|++.        ...+...+.+|.+.|..+-|....+. +++++
T Consensus        96 sf~hkhivk~~af~~ds~~llt----gg~ekllrvfdln~--------p~App~E~~ghtg~Ir~v~wc~eD~~-iLSSa  162 (334)
T KOG0278|consen   96 SFEHKHIVKAVAFSQDSNYLLT----GGQEKLLRVFDLNR--------PKAPPKEISGHTGGIRTVLWCHEDKC-ILSSA  162 (334)
T ss_pred             hhhhhheeeeEEecccchhhhc----cchHHHhhhhhccC--------CCCCchhhcCCCCcceeEEEeccCce-EEeec
Confidence            3568889999999999999998    58999999999983        23455678899999999999987775 77778


Q ss_pred             cCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc-eeEEEeCCC
Q 019059          141 DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTK  219 (346)
Q Consensus       141 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~  219 (346)
                      +|+.|++||.+++.....+....      +|+++..+++|++ ++....+.|.+||..+-..++.+..+. |.+.+++|+
T Consensus       163 dd~tVRLWD~rTgt~v~sL~~~s------~VtSlEvs~dG~i-lTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~  235 (334)
T KOG0278|consen  163 DDKTVRLWDHRTGTEVQSLEFNS------PVTSLEVSQDGRI-LTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPK  235 (334)
T ss_pred             cCCceEEEEeccCcEEEEEecCC------CCcceeeccCCCE-EEEecCceeEEeccccccceeeccCccccccccccCC
Confidence            89999999999988766665433      8999999998874 555567889999999999988888666 999999999


Q ss_pred             CCcEEEEecCCCeEEEEEcccCCcceeee-cCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          220 KKHLLVTAADESGIHLWDLRMLKAPIQEL-PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       220 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      .. .+++|++|..++.||..+ +..+..+ ++|.++|.|+.|+|+| .+.++||+||+|+||.+..
T Consensus       236 k~-~fVaGged~~~~kfDy~T-geEi~~~nkgh~gpVhcVrFSPdG-E~yAsGSEDGTirlWQt~~  298 (334)
T KOG0278|consen  236 KE-FFVAGGEDFKVYKFDYNT-GEEIGSYNKGHFGPVHCVRFSPDG-ELYASGSEDGTIRLWQTTP  298 (334)
T ss_pred             Cc-eEEecCcceEEEEEeccC-CceeeecccCCCCceEEEEECCCC-ceeeccCCCceEEEEEecC
Confidence            97 999999999999999998 4455554 8999999999999999 9999999999999999876

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.96  E-value=8.1e-28  Score=196.96  Aligned_cols=254  Identities=16%  Similarity=0.277  Sum_probs=187.6

Q ss_pred             eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeee-ccCCceEEEEeecCCCCcEE
Q 019059           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD-AHVGKINCVLWWSSGRHDKL  137 (346)
Q Consensus        59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~  137 (346)
                      ..+.+|...|.++++.|.|.++++    |+-|..|++||+.....     ..+..+.+. .....|.++.|++.+..+++
T Consensus       161 i~l~hgtk~Vsal~~Dp~GaR~~s----Gs~Dy~v~~wDf~gMda-----s~~~fr~l~P~E~h~i~sl~ys~Tg~~iLv  231 (641)
T KOG0772|consen  161 IQLKHGTKIVSALAVDPSGARFVS----GSLDYTVKFWDFQGMDA-----SMRSFRQLQPCETHQINSLQYSVTGDQILV  231 (641)
T ss_pred             EeccCCceEEEEeeecCCCceeee----ccccceEEEEecccccc-----cchhhhccCcccccccceeeecCCCCeEEE
Confidence            456678899999999999999998    58999999999973211     111122222 22457999999999997555


Q ss_pred             EEecCCeEEEEEcCCCCCCceeee--------cccCCCceeeEEEEeCCCCCc-EEEEecCCeEEEEEccCCCcc-ceee
Q 019059          138 VSIDEENIFLWSLDCSNKNAQVQS--------KQSSGMLHYLSGGAWDPHDVN-AVAATCESSVQFWDLRSMGKT-NSIE  207 (346)
Q Consensus       138 ~~~~d~~i~vwd~~~~~~~~~~~~--------~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~-~~~~  207 (346)
                      ++ .....+++|-+... ..+...        ....+|...+++.+|+|+.+. +++++.||++++||+...+.. ..+.
T Consensus       232 vs-g~aqakl~DRdG~~-~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik  309 (641)
T KOG0772|consen  232 VS-GSAQAKLLDRDGFE-IVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIK  309 (641)
T ss_pred             Ee-cCcceeEEccCCce-eeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEe
Confidence            54 47889999966322 222221        224689999999999997654 778888999999999866532 2232


Q ss_pred             c----cc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCc-c-eeeecCCCc--ceEEEEeCCCCCcEEEEecCCCe
Q 019059          208 H----AH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA-P-IQELPGHTH--WTWAVCCNPEYDGFILSAGTDST  276 (346)
Q Consensus       208 ~----~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~-~~~~~~~~~--~v~~v~~~~~~~~~l~s~~~d~~  276 (346)
                      .    +.   ++.++|+|+++ ++++|+.||.|.+|+.+.... + ...-..|..  .|+||.||++| ++|++-+.|++
T Consensus       310 ~k~~~g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg-~~LlSRg~D~t  387 (641)
T KOG0772|consen  310 TKPAGGKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDG-NYLLSRGFDDT  387 (641)
T ss_pred             eccCCCcccCceeeecCCCcc-hhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecccc-chhhhccCCCc
Confidence            1    11   99999999999 899999999999999865321 2 233346776  89999999999 99999999999


Q ss_pred             EEEEecCCCCCCCCCcccccCCcccccccccccccccc--ceeeEEEeCCCCCcEEEEeec------CCeEEEeee
Q 019059          277 VNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYE--DSVYGLAWSSREPWIFASLSY------DGRVRNHML  344 (346)
Q Consensus       277 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~s~~~------d~~v~vw~~  344 (346)
                      +++||++.                  ..+++.+..+-.  -+-+.++|||+.+ ++++|..      .+.+.+||-
T Consensus       388 LKvWDLrq------------------~kkpL~~~tgL~t~~~~tdc~FSPd~k-li~TGtS~~~~~~~g~L~f~d~  444 (641)
T KOG0772|consen  388 LKVWDLRQ------------------FKKPLNVRTGLPTPFPGTDCCFSPDDK-LILTGTSAPNGMTAGTLFFFDR  444 (641)
T ss_pred             eeeeeccc------------------cccchhhhcCCCccCCCCccccCCCce-EEEecccccCCCCCceEEEEec
Confidence            99999997                  356666655532  2357899999997 8888763      455777663

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=2.3e-27  Score=182.10  Aligned_cols=243  Identities=17%  Similarity=0.234  Sum_probs=186.6

Q ss_pred             cccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCC
Q 019059           64 HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEE  143 (346)
Q Consensus        64 h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~  143 (346)
                      -.+.|.+|+|||....++++   ++.|++||+|+++..      ....+ +....|.++|.+++|+.||.. +++++-|+
T Consensus        26 P~DsIS~l~FSP~~~~~~~A---~SWD~tVR~wevq~~------g~~~~-ka~~~~~~PvL~v~Wsddgsk-Vf~g~~Dk   94 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAA---GSWDGTVRIWEVQNS------GQLVP-KAQQSHDGPVLDVCWSDDGSK-VFSGGCDK   94 (347)
T ss_pred             cccchheeEeccccCceEEe---cccCCceEEEEEecC------Ccccc-hhhhccCCCeEEEEEccCCce-EEeeccCC
Confidence            45789999999977777766   689999999999831      11222 445678999999999999985 67777799


Q ss_pred             eEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCC--cEEEEecCCeEEEEEccCCCccceeeccc-eeEEEeCCCC
Q 019059          144 NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDV--NAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKK  220 (346)
Q Consensus       144 ~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~  220 (346)
                      .+++||+.+++ ...+.     .|..+|..+.|-+...  .|++|+.|.+|+.||+|...++.++..+. +.++..-  .
T Consensus        95 ~~k~wDL~S~Q-~~~v~-----~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~--~  166 (347)
T KOG0647|consen   95 QAKLWDLASGQ-VSQVA-----AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVL--Y  166 (347)
T ss_pred             ceEEEEccCCC-eeeee-----ecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhcc--C
Confidence            99999999874 33333     3667899999977555  68999999999999999999998887665 7777654  3


Q ss_pred             CcEEEEecCCCeEEEEEcccCCcceeeec-CCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCc
Q 019059          221 KHLLVTAADESGIHLWDLRMLKAPIQELP-GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESP  299 (346)
Q Consensus       221 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  299 (346)
                      + +++++..+..|.+|++++.....+... .....+.||+..++. ...+.|+-+|.+.|..+..+.             
T Consensus       167 p-m~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~-~~~alGsiEGrv~iq~id~~~-------------  231 (347)
T KOG0647|consen  167 P-MAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDK-DGFALGSIEGRVAIQYIDDPN-------------  231 (347)
T ss_pred             c-eeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecC-CceEeeeecceEEEEecCCCC-------------
Confidence            3 788888899999999986332222221 223457899988888 667999999999999998611             


Q ss_pred             cccccccccccccccc---------eeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          300 NQRANSLLNSYSDYED---------SVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       300 ~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                          .+.-++++.|+.         .|++|+|+|... .|+++|.||++.+||-+
T Consensus       232 ----~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg-tlvTaGsDGtf~FWDkd  281 (347)
T KOG0647|consen  232 ----PKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG-TLVTAGSDGTFSFWDKD  281 (347)
T ss_pred             ----ccCceeEEEeccCCCCCCceEEecceEeecccc-eEEEecCCceEEEecch
Confidence                133344555552         578999999876 89999999999999853

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=1.3e-26  Score=178.51  Aligned_cols=266  Identities=16%  Similarity=0.184  Sum_probs=207.1

Q ss_pred             eeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEE
Q 019059           16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAI   95 (346)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~v   95 (346)
                      ...|+.+.+++....|++++    -++.+.++++...    .....+.|..++.+++|.+ ...+++    |+.|+.|++
T Consensus        13 ~d~IS~v~f~~~~~~LLvss----WDgslrlYdv~~~----~l~~~~~~~~plL~c~F~d-~~~~~~----G~~dg~vr~   79 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSS----WDGSLRLYDVPAN----SLKLKFKHGAPLLDCAFAD-ESTIVT----GGLDGQVRR   79 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEe----ccCcEEEEeccch----hhhhheecCCceeeeeccC-CceEEE----eccCceEEE
Confidence            45678888888888888875    4688889988775    3355667999999999998 445555    579999999


Q ss_pred             EecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEE
Q 019059           96 WQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGA  175 (346)
Q Consensus        96 w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~  175 (346)
                      +|+.         . .....+..|...|.|+.+++... .++++++|+.|++||.+..........      ...|.++.
T Consensus        80 ~Dln---------~-~~~~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~~~~~~d~------~kkVy~~~  142 (323)
T KOG1036|consen   80 YDLN---------T-GNEDQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKVVVGTFDQ------GKKVYCMD  142 (323)
T ss_pred             EEec---------C-CcceeeccCCCceEEEEeeccCC-eEEEcccCccEEEEecccccccccccc------CceEEEEe
Confidence            9997         2 33345668999999999997655 489999999999999986332222221      22677776


Q ss_pred             eCCCCCcEEEEecCCeEEEEEccCCCccceeeccc----eeEEEeCCCCCcEEEEecCCCeEEEEEcccCC---cceeee
Q 019059          176 WDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH----VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK---APIQEL  248 (346)
Q Consensus       176 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~----v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~  248 (346)
                      ..  +..|++|+.+..+.+||+++.....+.....    ++|+++-|++. -+++++-||.|.+=.+....   .....|
T Consensus       143 v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~e-Gy~~sSieGRVavE~~d~s~~~~skkyaF  219 (323)
T KOG1036|consen  143 VS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGE-GYVVSSIEGRVAVEYFDDSEEAQSKKYAF  219 (323)
T ss_pred             cc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCC-ceEEEeecceEEEEccCCchHHhhhceeE
Confidence            64  6789999999999999999887655443222    99999999877 78889999998876655421   123344


Q ss_pred             cCCC---------cceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeE
Q 019059          249 PGHT---------HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYG  319 (346)
Q Consensus       249 ~~~~---------~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  319 (346)
                      +.|.         .+|++++|+|-. ..|+||+.||.|.+||+..                   .+.+..+......|.+
T Consensus       220 kCHr~~~~~~~~~yPVNai~Fhp~~-~tfaTgGsDG~V~~Wd~~~-------------------rKrl~q~~~~~~SI~s  279 (323)
T KOG1036|consen  220 KCHRLSEKDTEIIYPVNAIAFHPIH-GTFATGGSDGIVNIWDLFN-------------------RKRLKQLAKYETSISS  279 (323)
T ss_pred             EeeecccCCceEEEEeceeEecccc-ceEEecCCCceEEEccCcc-------------------hhhhhhccCCCCceEE
Confidence            4443         479999999998 8999999999999999998                   7888888887778999


Q ss_pred             EEeCCCCCcEEEEeec
Q 019059          320 LAWSSREPWIFASLSY  335 (346)
Q Consensus       320 ~~~~~~~~~~l~s~~~  335 (346)
                      ++|+.+|. +||.++.
T Consensus       280 lsfs~dG~-~LAia~s  294 (323)
T KOG1036|consen  280 LSFSMDGS-LLAIASS  294 (323)
T ss_pred             EEeccCCC-eEEEEec
Confidence            99999997 7887763

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.96  E-value=3.3e-27  Score=178.25  Aligned_cols=246  Identities=13%  Similarity=0.203  Sum_probs=195.5

Q ss_pred             cccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCc
Q 019059           11 GLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGES   90 (346)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d   90 (346)
                      .|..+.|+++.+..+.++.-+..    ...+....+|.-.+.+   ..-+..+|.+.|+++...-+.+++++    |+.|
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFs----caKD~~~~vw~s~nGe---rlGty~GHtGavW~~Did~~s~~liT----GSAD   73 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFS----CAKDSTPTVWYSLNGE---RLGTYDGHTGAVWCCDIDWDSKHLIT----GSAD   73 (327)
T ss_pred             ccccCccccceEEecCCCcEEEE----ecCCCCceEEEecCCc---eeeeecCCCceEEEEEecCCcceeee----cccc
Confidence            35557899999998888866643    3566777777654432   34677899999999999999999988    5799


Q ss_pred             ceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEE----ecCCeEEEEEcCCCC-------CCcee
Q 019059           91 YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS----IDEENIFLWSLDCSN-------KNAQV  159 (346)
Q Consensus        91 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----~~d~~i~vwd~~~~~-------~~~~~  159 (346)
                      .++++||++         .++.+..++ ...+|..+.|+++|+.++++.    +..+.|.++|++...       ...++
T Consensus        74 ~t~kLWDv~---------tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI  143 (327)
T KOG0643|consen   74 QTAKLWDVE---------TGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKI  143 (327)
T ss_pred             ceeEEEEcC---------CCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEe
Confidence            999999999         889988884 467899999999999533333    235789999998432       11122


Q ss_pred             eecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEE
Q 019059          160 QSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLW  236 (346)
Q Consensus       160 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~  236 (346)
                      .     .+...++.+-|.|.++.|+++..||.|..||+++++....-...|   |+.+.++|+.. ++++++.|.+-++|
T Consensus       144 ~-----t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T-~FiT~s~Dttakl~  217 (327)
T KOG0643|consen  144 P-----TPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRT-YFITGSKDTTAKLV  217 (327)
T ss_pred             c-----CCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcc-eEEecccCccceee
Confidence            1     233578899999999999999999999999999987665554455   99999999998 99999999999999


Q ss_pred             EcccCC------------------------------------------------------cceeeecCCCcceEEEEeCC
Q 019059          237 DLRMLK------------------------------------------------------APIQELPGHTHWTWAVCCNP  262 (346)
Q Consensus       237 d~~~~~------------------------------------------------------~~~~~~~~~~~~v~~v~~~~  262 (346)
                      |.++..                                                      +.+..+++|-++|++|+|+|
T Consensus       218 D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhP  297 (327)
T KOG0643|consen  218 DVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHP  297 (327)
T ss_pred             eccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECC
Confidence            987542                                                      01223367999999999999


Q ss_pred             CCCcEEEEecCCCeEEEEecCC
Q 019059          263 EYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       263 ~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      +| ...++|++||.|++.-...
T Consensus       298 dG-ksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  298 DG-KSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             CC-cccccCCCCceEEEEEecc
Confidence            99 9999999999999986654

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=6.7e-29  Score=197.91  Aligned_cols=245  Identities=16%  Similarity=0.259  Sum_probs=202.4

Q ss_pred             eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEE
Q 019059           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV  138 (346)
Q Consensus        59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  138 (346)
                      ..+..|.+.+.++.|-++...|++    +|.|..|++|+..       ........++.+..+.|+.++|.+++.+ +++
T Consensus       169 ~~ld~h~gev~~v~~l~~sdtlat----gg~Dr~Ik~W~v~-------~~k~~~~~tLaGs~g~it~~d~d~~~~~-~iA  236 (459)
T KOG0288|consen  169 FVLDAHEGEVHDVEFLRNSDTLAT----GGSDRIIKLWNVL-------GEKSELISTLAGSLGNITSIDFDSDNKH-VIA  236 (459)
T ss_pred             hhhhccccccceeEEccCcchhhh----cchhhhhhhhhcc-------cchhhhhhhhhccCCCcceeeecCCCce-EEe
Confidence            445679999999999998788877    5899999999987       2234566778888899999999999997 777


Q ss_pred             EecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc-eeEEEeC
Q 019059          139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYD  217 (346)
Q Consensus       139 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~  217 (346)
                      ++.|+.+++|+++..+...     ...+|...|+++.|......+++++.|.+|++||+....+.+++.... +..|..+
T Consensus       237 as~d~~~r~Wnvd~~r~~~-----TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~  311 (459)
T KOG0288|consen  237 ASNDKNLRLWNVDSLRLRH-----TLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS  311 (459)
T ss_pred             ecCCCceeeeeccchhhhh-----hhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec
Confidence            7889999999998655332     235688899999998766668999999999999999999988887666 8888877


Q ss_pred             CCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccC
Q 019059          218 TKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVE  297 (346)
Q Consensus       218 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  297 (346)
                      +  . .+++|..|++|++||+|. ..+......+. .|+++..++++ ..|.+.+.|.++.+.|+++             
T Consensus       312 ~--~-~~~SgH~DkkvRfwD~Rs-~~~~~sv~~gg-~vtSl~ls~~g-~~lLsssRDdtl~viDlRt-------------  372 (459)
T KOG0288|consen  312 I--S-DVISGHFDKKVRFWDIRS-ADKTRSVPLGG-RVTSLDLSMDG-LELLSSSRDDTLKVIDLRT-------------  372 (459)
T ss_pred             c--e-eeeecccccceEEEeccC-CceeeEeecCc-ceeeEeeccCC-eEEeeecCCCceeeeeccc-------------
Confidence            3  2 789999999999999997 55677777654 99999999999 8888889999999999998             


Q ss_pred             Ccccccccccccccc----ccceeeEEEeCCCCCcEEEEeecCCeEEEeeecC
Q 019059          298 SPNQRANSLLNSYSD----YEDSVYGLAWSSREPWIFASLSYDGRVRNHMLEK  346 (346)
Q Consensus       298 ~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~~  346 (346)
                            .+..+.+..    ..+..+.+.|||++. ++++||.||.|+||++.+
T Consensus       373 ------~eI~~~~sA~g~k~asDwtrvvfSpd~~-YvaAGS~dgsv~iW~v~t  418 (459)
T KOG0288|consen  373 ------KEIRQTFSAEGFKCASDWTRVVFSPDGS-YVAAGSADGSVYIWSVFT  418 (459)
T ss_pred             ------ccEEEEeeccccccccccceeEECCCCc-eeeeccCCCcEEEEEccC
Confidence                  555544432    122378999999997 999999999999999753

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=6.9e-28  Score=186.46  Aligned_cols=252  Identities=22%  Similarity=0.381  Sum_probs=207.6

Q ss_pred             EEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcE
Q 019059           57 ICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDK  136 (346)
Q Consensus        57 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  136 (346)
                      ..+.+.+|.+.|+.++.....+ ++.+   .+.|.+.+||.++         .+.++.++.+|.+.|+++.|++.+. ++
T Consensus       140 lvre~~GHkDGiW~Vaa~~tqp-i~gt---ASADhTA~iWs~E---------sg~CL~~Y~GH~GSVNsikfh~s~~-L~  205 (481)
T KOG0300|consen  140 LVRELEGHKDGIWHVAADSTQP-ICGT---ASADHTARIWSLE---------SGACLATYTGHTGSVNSIKFHNSGL-LL  205 (481)
T ss_pred             ehhhhcccccceeeehhhcCCc-ceee---cccccceeEEeec---------cccceeeecccccceeeEEeccccc-eE
Confidence            3467889999999999876555 4443   3789999999999         8999999999999999999999888 56


Q ss_pred             EEEecCCeEEEEEcC------CCC-----------------------------CCceeeecccCCCceeeEEEEeCCCCC
Q 019059          137 LVSIDEENIFLWSLD------CSN-----------------------------KNAQVQSKQSSGMLHYLSGGAWDPHDV  181 (346)
Q Consensus       137 ~~~~~d~~i~vwd~~------~~~-----------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~  181 (346)
                      ++++.|++-.||...      ...                             ...........+|...|.+..|...++
T Consensus       206 lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~  285 (481)
T KOG0300|consen  206 LTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQ  285 (481)
T ss_pred             EEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcc
Confidence            777789999999721      100                             011112223456778888889999999


Q ss_pred             cEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEE
Q 019059          182 NAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAV  258 (346)
Q Consensus       182 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v  258 (346)
                      .+++++.|.+-.+||+++++.+..+. +|   .+.++-+|..+ ++++.+.|.+.++||+|..-..+..|++|...|+++
T Consensus       286 Q~vTaSWDRTAnlwDVEtge~v~~Lt-GHd~ELtHcstHptQr-LVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~  363 (481)
T KOG0300|consen  286 QMVTASWDRTANLWDVETGEVVNILT-GHDSELTHCSTHPTQR-LVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSV  363 (481)
T ss_pred             eeeeeeccccceeeeeccCceecccc-CcchhccccccCCcce-EEEEeccCceeEeccchhhcceeeeecccccceeEE
Confidence            99999999999999999999988887 66   88888899988 999999999999999997666788999999999999


Q ss_pred             EeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCe
Q 019059          259 CCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGR  338 (346)
Q Consensus       259 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~  338 (346)
                      .|..+.  .+++|+.|.+|+|||++.                  ...++.++.- .++++.++.+..++ +++.--..+.
T Consensus       364 vF~~dd--~vVSgSDDrTvKvWdLrN------------------MRsplATIRt-dS~~NRvavs~g~~-iIAiPhDNRq  421 (481)
T KOG0300|consen  364 VFNTDD--RVVSGSDDRTVKVWDLRN------------------MRSPLATIRT-DSPANRVAVSKGHP-IIAIPHDNRQ  421 (481)
T ss_pred             EEecCC--ceeecCCCceEEEeeecc------------------ccCcceeeec-CCccceeEeecCCc-eEEeccCCce
Confidence            999875  689999999999999997                  2455666543 45689999998776 8888888889


Q ss_pred             EEEeeecC
Q 019059          339 VRNHMLEK  346 (346)
Q Consensus       339 v~vw~~~~  346 (346)
                      |++||+.|
T Consensus       422 vRlfDlnG  429 (481)
T KOG0300|consen  422 VRLFDLNG  429 (481)
T ss_pred             EEEEecCC
Confidence            99999875

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=5.7e-28  Score=202.93  Aligned_cols=248  Identities=18%  Similarity=0.294  Sum_probs=200.6

Q ss_pred             cccceE---EeeecCC-CCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEE
Q 019059           64 HPNEIW---DLSSCPF-DQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS  139 (346)
Q Consensus        64 h~~~v~---~~~~~~~-~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  139 (346)
                      |...|.   .+..++. +++|++    ||.||.|++|++.......   ....+..+..|.+.|+.+....+++. ++++
T Consensus        20 n~~~v~~~~~Lq~da~~~ryLfT----gGRDg~i~~W~~~~d~~~~---s~~~~asme~HsDWVNDiiL~~~~~t-lIS~   91 (735)
T KOG0308|consen   20 NRNGVNITKALQLDAPNGRYLFT----GGRDGIIRLWSVTQDSNEP---STPYIASMEHHSDWVNDIILCGNGKT-LISA   91 (735)
T ss_pred             ccccccchhhccccCCCCceEEe----cCCCceEEEeccccccCCc---ccchhhhhhhhHhHHhhHHhhcCCCc-eEEe
Confidence            444455   5555544 455776    5899999999998433221   22246778899999999999999874 7888


Q ss_pred             ecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEe-CCCCCcEEEEecCCeEEEEEccCCCc--cceee--------c
Q 019059          140 IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAW-DPHDVNAVAATCESSVQFWDLRSMGK--TNSIE--------H  208 (346)
Q Consensus       140 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~--------~  208 (346)
                      +.|-+|++|+...+..   ........|...|.++++ .++...+++|+-|+.|.+||++++..  +..+.        .
T Consensus        92 SsDtTVK~W~~~~~~~---~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~s  168 (735)
T KOG0308|consen   92 SSDTTVKVWNAHKDNT---FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGS  168 (735)
T ss_pred             cCCceEEEeecccCcc---hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCC
Confidence            8899999999986541   122223447789999999 77778888888999999999998732  22221        1


Q ss_pred             cc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCC
Q 019059          209 AH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTS  285 (346)
Q Consensus       209 ~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~  285 (346)
                      ++   |++++.++.+. ++++|+.++.+++||.++ ...+..+++|+..|..+..+++| ..++++|.||+|++||+.. 
T Consensus       169 G~k~siYSLA~N~t~t-~ivsGgtek~lr~wDprt-~~kimkLrGHTdNVr~ll~~dDG-t~~ls~sSDgtIrlWdLgq-  244 (735)
T KOG0308|consen  169 GPKDSIYSLAMNQTGT-IIVSGGTEKDLRLWDPRT-CKKIMKLRGHTDNVRVLLVNDDG-TRLLSASSDGTIRLWDLGQ-  244 (735)
T ss_pred             CCccceeeeecCCcce-EEEecCcccceEEecccc-ccceeeeeccccceEEEEEcCCC-CeEeecCCCceEEeeeccc-
Confidence            33   99999999996 999999999999999998 55677888999999999999999 9999999999999999998 


Q ss_pred             CCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          286 NHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                                        ..+++++..|...|+++..+|+-. .+.+|+.||.|..=|+.
T Consensus       245 ------------------QrCl~T~~vH~e~VWaL~~~~sf~-~vYsG~rd~~i~~Tdl~  285 (735)
T KOG0308|consen  245 ------------------QRCLATYIVHKEGVWALQSSPSFT-HVYSGGRDGNIYRTDLR  285 (735)
T ss_pred             ------------------cceeeeEEeccCceEEEeeCCCcc-eEEecCCCCcEEecccC
Confidence                              899999999999999999999886 89999999999876663

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=9.1e-27  Score=188.23  Aligned_cols=284  Identities=18%  Similarity=0.285  Sum_probs=211.0

Q ss_pred             eeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCe----------------EEEeeeeccccceEEeeecCCCC
Q 019059           15 QARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTE----------------LICEGLFSHPNEIWDLSSCPFDQ   78 (346)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~----------------~~~~~~~~h~~~v~~~~~~~~~~   78 (346)
                      +.+.+.++...++..+...+    +.++.|.-|++......                +.... .+|...|.+++.++|++
T Consensus       141 H~~s~~~vals~d~~~~fsa----sk~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r-~~h~keil~~avS~Dgk  215 (479)
T KOG0299|consen  141 HQLSVTSVALSPDDKRVFSA----SKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR-KGHVKEILTLAVSSDGK  215 (479)
T ss_pred             ccCcceEEEeeccccceeec----CCCcceeeeehhcCcccccccccchhhhhccCCCCccc-ccccceeEEEEEcCCCc
Confidence            44556666666666555443    45566666665543211                11111 37889999999999999


Q ss_pred             ceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCce
Q 019059           79 RIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQ  158 (346)
Q Consensus        79 ~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~  158 (346)
                      +|++    |+.|..|.||+.+         +.+.++.+.+|.+.|.+++|-.... -+++++.|+.|++|+++.....  
T Consensus       216 ylat----gg~d~~v~Iw~~~---------t~ehv~~~~ghr~~V~~L~fr~gt~-~lys~s~Drsvkvw~~~~~s~v--  279 (479)
T KOG0299|consen  216 YLAT----GGRDRHVQIWDCD---------TLEHVKVFKGHRGAVSSLAFRKGTS-ELYSASADRSVKVWSIDQLSYV--  279 (479)
T ss_pred             EEEe----cCCCceEEEecCc---------ccchhhcccccccceeeeeeecCcc-ceeeeecCCceEEEehhHhHHH--
Confidence            9998    5899999999999         7889999999999999999976544 4888889999999999854322  


Q ss_pred             eeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEE
Q 019059          159 VQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWD  237 (346)
Q Consensus       159 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d  237 (346)
                         ....+|...|.++....-.+.+-+++.|+++++|++.....+.....+. +.|++|-.+.  .+++|+.+|.|.+|+
T Consensus       280 ---etlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~--HfvsGSdnG~IaLWs  354 (479)
T KOG0299|consen  280 ---ETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDE--HFVSGSDNGSIALWS  354 (479)
T ss_pred             ---HHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEeccc--ceeeccCCceEEEee
Confidence               2345688899999887767766667799999999996544433322222 9999998776  489999999999999


Q ss_pred             cccCCcceeeec-CC-----------CcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccc
Q 019059          238 LRMLKAPIQELP-GH-----------THWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANS  305 (346)
Q Consensus       238 ~~~~~~~~~~~~-~~-----------~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  305 (346)
                      +.+ ++|+.+.. .|           ..+|++++..|.. .++|+|+.+|.|++|-+...-.               .-.
T Consensus       355 ~~K-Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~s-dL~asGS~~G~vrLW~i~~g~r---------------~i~  417 (479)
T KOG0299|consen  355 LLK-KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGS-DLLASGSWSGCVRLWKIEDGLR---------------AIN  417 (479)
T ss_pred             ecc-cCceeEeeccccccCCccccccccceeeeEecccC-ceEEecCCCCceEEEEecCCcc---------------ccc
Confidence            987 55665543 12           2389999999999 9999999999999999987100               024


Q ss_pred             cccccccccceeeEEEeCCCCCcEEEEeecCCeEEEe
Q 019059          306 LLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNH  342 (346)
Q Consensus       306 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw  342 (346)
                      ++..+. -.+.|++++|+++|+++++..+....+--|
T Consensus       418 ~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW  453 (479)
T KOG0299|consen  418 LLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRW  453 (479)
T ss_pred             eeeecc-cccEEEEEEEccCCCEEEEeccccccccee
Confidence            444444 456799999999998788877776665555

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.96  E-value=2.9e-27  Score=181.12  Aligned_cols=284  Identities=14%  Similarity=0.221  Sum_probs=202.2

Q ss_pred             CeEEEEEecCCCCeEEEeeeeccccceEEeeecCCC-CceEEEEeecCCcceEEEEecCcccC-CCCCccceeee-----
Q 019059           42 NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFD-QRIFSTVFSTGESYGAAIWQIPELYG-QLNSPQLERIA-----  114 (346)
Q Consensus        42 ~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~~~~~d~~i~vw~~~~~~~-~~~~~~~~~~~-----  114 (346)
                      ..|.-+.++++..     ....|.+.|+++...+.. +++++    |+.||.|.|||++.... +.+.-..+.+.     
T Consensus        25 rRil~L~Ln~d~d-----~~r~HgGsvNsL~id~tegrymlS----Ggadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~   95 (397)
T KOG4283|consen   25 RRILSLQLNNDKD-----FVRPHGGSVNSLQIDLTEGRYMLS----GGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQ   95 (397)
T ss_pred             hhhheeeccCCcc-----eeccCCCccceeeeccccceEEee----cCCCccEEEEEeccccchhhccceeheeeecccc
Confidence            3455566666533     234699999999998864 45555    68999999999984321 11111111111     


Q ss_pred             eeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCC---cEEEEecCCe
Q 019059          115 ALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDV---NAVAATCESS  191 (346)
Q Consensus       115 ~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~d~~  191 (346)
                      .-.+|+-.|..+.|-|-...++.+++.|.++++||.++.+....+...      ..|++.+++|-..   .++++..+-.
T Consensus        96 h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me------~~VYshamSp~a~sHcLiA~gtr~~~  169 (397)
T KOG4283|consen   96 HENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKME------GKVYSHAMSPMAMSHCLIAAGTRDVQ  169 (397)
T ss_pred             CCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecC------ceeehhhcChhhhcceEEEEecCCCc
Confidence            124678899999999999887888899999999999976644443332      2788888988543   4566667889


Q ss_pred             EEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceee--------------ecCCCcc
Q 019059          192 VQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQE--------------LPGHTHW  254 (346)
Q Consensus       192 i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--------------~~~~~~~  254 (346)
                      |++.|+.+|...+.+. +|   |.++.|+|..+++|++|+.||.|++||+|....+...              -..|.+.
T Consensus       170 VrLCDi~SGs~sH~Ls-GHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gk  248 (397)
T KOG4283|consen  170 VRLCDIASGSFSHTLS-GHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGK  248 (397)
T ss_pred             EEEEeccCCcceeeec-cccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccce
Confidence            9999999999999888 77   9999999999999999999999999999975333322              2357788


Q ss_pred             eEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCC--------------------c--------ccccccc
Q 019059          255 TWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVES--------------------P--------NQRANSL  306 (346)
Q Consensus       255 v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~--------------------~--------~~~~~~~  306 (346)
                      ++.++|+.++ .++++.+.|..+++|+...+...+.........                    |        ....+..
T Consensus       249 vngla~tSd~-~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~  327 (397)
T KOG4283|consen  249 VNGLAWTSDA-RYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSF  327 (397)
T ss_pred             eeeeeecccc-hhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceE
Confidence            9999999999 999999999999999998864332211110000                    0        0123444


Q ss_pred             ccccccccceeeEEEeCCCCCcEEEEeecCCeEEEee
Q 019059          307 LNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHM  343 (346)
Q Consensus       307 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~  343 (346)
                      +..+..|-..|.+..+.|+-+ ...++..|+.+..|.
T Consensus       328 ir~l~~h~k~i~c~~~~~~fq-~~~tg~~d~ni~~w~  363 (397)
T KOG4283|consen  328 VRRLSTHLKRINCAAYRPDFE-QCFTGDMNGNIYMWS  363 (397)
T ss_pred             EEeeecccceeeEEeecCchh-hhhccccCCcccccc
Confidence            555666666677777777665 566777777777774

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.96  E-value=7.2e-27  Score=197.68  Aligned_cols=253  Identities=17%  Similarity=0.279  Sum_probs=207.7

Q ss_pred             CCCCeEEEEEecCCCCeEEEeeeeccccceEE-eeecCCCC-ceEEEEeecCCcceEEEEecCcccCCCCCccceeeeee
Q 019059           39 KEENEVHLLRLSSGGTELICEGLFSHPNEIWD-LSSCPFDQ-RIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL  116 (346)
Q Consensus        39 ~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~-~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~  116 (346)
                      +.++.+.+|.--. +..+....+.+|.+-|.. +++-+..+ .++.    |+.|..+.+|...         ...++.++
T Consensus        32 sRd~t~~vw~~~~-~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~----g~~D~~i~v~~~~---------~~~P~~~L   97 (745)
T KOG0301|consen   32 SRDGTVKVWAKKG-KQYLETHAFEGPKGFIANSICYAESDKGRLVV----GGMDTTIIVFKLS---------QAEPLYTL   97 (745)
T ss_pred             CCCCceeeeeccC-cccccceecccCcceeeccceeccccCcceEe----ecccceEEEEecC---------CCCchhhh
Confidence            4577777775433 233444567778888887 88876444 4555    5899999999998         78899999


Q ss_pred             eccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEE
Q 019059          117 DAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWD  196 (346)
Q Consensus       117 ~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d  196 (346)
                      ++|+..|++++...++.  ++++++|.++++|........       ..+|...|.+++.-|++ .+++|+.|.+|++|.
T Consensus        98 kgH~snVC~ls~~~~~~--~iSgSWD~TakvW~~~~l~~~-------l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk  167 (745)
T KOG0301|consen   98 KGHKSNVCSLSIGEDGT--LISGSWDSTAKVWRIGELVYS-------LQGHTASVWAVASLPEN-TYVTGSADKTIKLWK  167 (745)
T ss_pred             hccccceeeeecCCcCc--eEecccccceEEecchhhhcc-------cCCcchheeeeeecCCC-cEEeccCcceeeecc
Confidence            99999999999888887  899999999999998743211       45788899999999977 799999999999997


Q ss_pred             ccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecC
Q 019059          197 LRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGT  273 (346)
Q Consensus       197 ~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~  273 (346)
                      -  ++.++++. +|   |+.+++-+++.  |++++.||.|++|++.  +..+.++.+|+.-+.++...+++ ..++++++
T Consensus       168 ~--~~~l~tf~-gHtD~VRgL~vl~~~~--flScsNDg~Ir~w~~~--ge~l~~~~ghtn~vYsis~~~~~-~~Ivs~gE  239 (745)
T KOG0301|consen  168 G--GTLLKTFS-GHTDCVRGLAVLDDSH--FLSCSNDGSIRLWDLD--GEVLLEMHGHTNFVYSISMALSD-GLIVSTGE  239 (745)
T ss_pred             C--Cchhhhhc-cchhheeeeEEecCCC--eEeecCCceEEEEecc--CceeeeeeccceEEEEEEecCCC-CeEEEecC
Confidence            5  66777777 78   99999999875  8899999999999995  56889999999999999977777 89999999


Q ss_pred             CCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeecC
Q 019059          274 DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLEK  346 (346)
Q Consensus       274 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~~  346 (346)
                      |++++||+..                     ++.+.+.-....|+++.+-++|.  +++|+.||.||||..++
T Consensus       240 DrtlriW~~~---------------------e~~q~I~lPttsiWsa~~L~NgD--Ivvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  240 DRTLRIWKKD---------------------ECVQVITLPTTSIWSAKVLLNGD--IVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             CceEEEeecC---------------------ceEEEEecCccceEEEEEeeCCC--EEEeccCceEEEEEecc
Confidence            9999999886                     34555544455699999999987  78888999999998763

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=5.9e-26  Score=174.83  Aligned_cols=270  Identities=17%  Similarity=0.263  Sum_probs=196.3

Q ss_pred             eccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecC--CCCcEEEE
Q 019059           62 FSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSS--GRHDKLVS  139 (346)
Q Consensus        62 ~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~  139 (346)
                      .+|.+-|+++.|.+.|++++++    +.|++++|||.+.     ...+..+....+.|.+.|..+.|.+-  |+ +++++
T Consensus        10 s~h~DlihdVs~D~~GRRmAtC----SsDq~vkI~d~~~-----~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq-vvA~c   79 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATC----SSDQTVKIWDSTS-----DSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ-VVATC   79 (361)
T ss_pred             cCCcceeeeeeecccCceeeec----cCCCcEEEEeccC-----CCCceEEeeeEEecCCcEEEEEecCccccc-eEEEE
Confidence            4788999999999999999985    7999999999752     34467888889999999999999643  44 45566


Q ss_pred             ecCCeEEEEEcCCCCC----CceeeecccCCCceeeEEEEeCCC--CCcEEEEecCCeEEEEEccCCCccc------eee
Q 019059          140 IDEENIFLWSLDCSNK----NAQVQSKQSSGMLHYLSGGAWDPH--DVNAVAATCESSVQFWDLRSMGKTN------SIE  207 (346)
Q Consensus       140 ~~d~~i~vwd~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~------~~~  207 (346)
                      +.|+++.||.-.....    ..-............|+.+.|.|.  |-.+++++.||.||||+....-.+.      .+.
T Consensus        80 S~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~  159 (361)
T KOG2445|consen   80 SYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQ  159 (361)
T ss_pred             ecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhh
Confidence            8999999998632111    011112223344568999999985  4568888899999999876543222      221


Q ss_pred             -----cc--c--eeEEEeCCCC--CcEEEEecCC-----CeEEEEEcccCC---cceeeecCCCcceEEEEeCCCCC---
Q 019059          208 -----HA--H--VRNVDYDTKK--KHLLVTAADE-----SGIHLWDLRMLK---APIQELPGHTHWTWAVCCNPEYD---  265 (346)
Q Consensus       208 -----~~--~--v~~~~~~~~~--~~~l~~~~~d-----g~i~i~d~~~~~---~~~~~~~~~~~~v~~v~~~~~~~---  265 (346)
                           ++  +  ..|+.|+|..  +.+|+.|+.+     +.+.||......   ..+.++.+|+.+|+.++|.|+-.   
T Consensus       160 ~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y  239 (361)
T KOG2445|consen  160 NVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSY  239 (361)
T ss_pred             hccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCce
Confidence                 11  1  7899998753  2378888776     478899766533   24556779999999999999742   


Q ss_pred             cEEEEecCCCeEEEEecCCCCCCCCCcc-cccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEee
Q 019059          266 GFILSAGTDSTVNLWLVSTSNHDELPSE-SLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHM  343 (346)
Q Consensus       266 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~  343 (346)
                      .+||+++.|| |+||.+.......+..+ .......+..-+.+..+..|.+.|+.+.|+-.|. +|++.|.||.||+|.
T Consensus       240 ~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGt-iLsStGdDG~VRLWk  316 (361)
T KOG2445|consen  240 HLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGT-ILSSTGDDGCVRLWK  316 (361)
T ss_pred             eeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeee-EEeecCCCceeeehh
Confidence            6899999999 99999986322211111 1111122234566777889999999999999996 999999999999995

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=2e-26  Score=177.49  Aligned_cols=239  Identities=15%  Similarity=0.174  Sum_probs=188.8

Q ss_pred             ccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCe
Q 019059           65 PNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEEN  144 (346)
Q Consensus        65 ~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~  144 (346)
                      .+.|.++.|+|....|+++    +.||.+++|+++         .......+ .|..++.+++|.++.+  +++++-||.
T Consensus        13 ~d~IS~v~f~~~~~~LLvs----sWDgslrlYdv~---------~~~l~~~~-~~~~plL~c~F~d~~~--~~~G~~dg~   76 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVS----SWDGSLRLYDVP---------ANSLKLKF-KHGAPLLDCAFADEST--IVTGGLDGQ   76 (323)
T ss_pred             hhceeeEEEcCcCCcEEEE----eccCcEEEEecc---------chhhhhhe-ecCCceeeeeccCCce--EEEeccCce
Confidence            4789999999999999986    599999999998         33343344 7899999999998766  788888999


Q ss_pred             EEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcE
Q 019059          145 IFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHL  223 (346)
Q Consensus       145 i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~  223 (346)
                      |+.+|+.+++.. .+     ..|...+.++.+++....+++|+.|++|++||.+.......+..+. |.++...-  + .
T Consensus        77 vr~~Dln~~~~~-~i-----gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g--~-~  147 (323)
T KOG1036|consen   77 VRRYDLNTGNED-QI-----GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSG--N-R  147 (323)
T ss_pred             EEEEEecCCcce-ee-----ccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccC--C-E
Confidence            999999976532 22     2366699999999988899999999999999999877777776555 88888763  3 6


Q ss_pred             EEEecCCCeEEEEEcccCCcceeeec-CCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccc
Q 019059          224 LVTAADESGIHLWDLRMLKAPIQELP-GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQR  302 (346)
Q Consensus       224 l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  302 (346)
                      |++|+.+..|.+||+|+...+.+... .-+-.+.||++-|++ .-+++++-||.|.+=.+...  ++             
T Consensus       148 LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~-eGy~~sSieGRVavE~~d~s--~~-------------  211 (323)
T KOG1036|consen  148 LVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNG-EGYVVSSIEGRVAVEYFDDS--EE-------------  211 (323)
T ss_pred             EEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCC-CceEEEeecceEEEEccCCc--hH-------------
Confidence            88889999999999998776553322 345678999999977 77888999999988666651  00             


Q ss_pred             ccccccccccccc---------eeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          303 ANSLLNSYSDYED---------SVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       303 ~~~~~~~~~~~~~---------~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      .......++.|..         +|++|+|+|-.+ .|+||+.||.|.+||+.
T Consensus       212 ~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~-tfaTgGsDG~V~~Wd~~  262 (323)
T KOG1036|consen  212 AQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG-TFATGGSDGIVNIWDLF  262 (323)
T ss_pred             HhhhceeEEeeecccCCceEEEEeceeEeccccc-eEEecCCCceEEEccCc
Confidence            0133344555542         799999999876 89999999999999974

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.3e-26  Score=179.27  Aligned_cols=274  Identities=11%  Similarity=0.145  Sum_probs=190.1

Q ss_pred             EEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCc
Q 019059           56 LICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHD  135 (346)
Q Consensus        56 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  135 (346)
                      +....+.+|.+.|++++|+.+|+.|+++    +.|+.|++|++++-..    ...+.++.- ..-+.-+.+.|+||.+.+
T Consensus        77 l~~~~LKgH~~~vt~~~FsSdGK~lat~----~~Dr~Ir~w~~~DF~~----~eHr~~R~n-ve~dhpT~V~FapDc~s~  147 (420)
T KOG2096|consen   77 LNVSVLKGHKKEVTDVAFSSDGKKLATI----SGDRSIRLWDVRDFEN----KEHRCIRQN-VEYDHPTRVVFAPDCKSV  147 (420)
T ss_pred             hhhhhhhccCCceeeeEEcCCCceeEEE----eCCceEEEEecchhhh----hhhhHhhcc-ccCCCceEEEECCCcceE
Confidence            3346678999999999999999999997    4899999999983110    011111111 112345789999999976


Q ss_pred             EEEEecCCeEEEEEcCCCCCCc---eee-ec---ccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeec
Q 019059          136 KLVSIDEENIFLWSLDCSNKNA---QVQ-SK---QSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH  208 (346)
Q Consensus       136 ~~~~~~d~~i~vwd~~~~~~~~---~~~-~~---~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  208 (346)
                      +++.-....+++|.+...+.-.   ... ..   ....|.-.+..+-....+.+|++++.|..|.+||++ |+.+..+..
T Consensus       148 vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idt  226 (420)
T KOG2096|consen  148 VVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDT  226 (420)
T ss_pred             EEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecc
Confidence            6666667899999886433211   100 00   122344456666777778899999999999999999 888877764


Q ss_pred             cc--eeEEEeCCCCCcEEEEecCCCeEEEEEcccCC-------cceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEE
Q 019059          209 AH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK-------APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNL  279 (346)
Q Consensus       209 ~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~i  279 (346)
                      ..  -+..+.+|+|+ ++++++..-.|++|.+--.+       ..+..+++|...|..++|+++. ..+++.|.||+++|
T Consensus       227 nq~~n~~aavSP~GR-Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S-~r~vtvSkDG~wri  304 (420)
T KOG2096|consen  227 NQSSNYDAAVSPDGR-FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSS-TRAVTVSKDGKWRI  304 (420)
T ss_pred             ccccccceeeCCCCc-EEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCc-ceeEEEecCCcEEE
Confidence            44  77889999999 78888888899999864211       2456788999999999999999 99999999999999


Q ss_pred             EecCCCCCCCCCcc----------cccCCccc-----------------------ccccccccc-ccccceeeEEEeCCC
Q 019059          280 WLVSTSNHDELPSE----------SLVESPNQ-----------------------RANSLLNSY-SDYEDSVYGLAWSSR  325 (346)
Q Consensus       280 wd~~~~~~~~~~~~----------~~~~~~~~-----------------------~~~~~~~~~-~~~~~~v~~~~~~~~  325 (346)
                      ||+.-.-.......          .....+.+                       ..++....+ ..|...|.+++|+++
T Consensus       305 wdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~  384 (420)
T KOG2096|consen  305 WDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSD  384 (420)
T ss_pred             eeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCC
Confidence            99865311100000          00000000                       011111111 247788999999999


Q ss_pred             CCcEEEEeecCCeEEEee
Q 019059          326 EPWIFASLSYDGRVRNHM  343 (346)
Q Consensus       326 ~~~~l~s~~~d~~v~vw~  343 (346)
                      |+ ++++++ |+.+++..
T Consensus       385 g~-~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  385 GK-YIATCG-DRYVRVIR  400 (420)
T ss_pred             Cc-EEeeec-ceeeeeec
Confidence            97 888888 78888764

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=9.6e-27  Score=180.18  Aligned_cols=269  Identities=16%  Similarity=0.298  Sum_probs=212.5

Q ss_pred             CCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEec------CcccC----------
Q 019059           40 EENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQI------PELYG----------  103 (346)
Q Consensus        40 ~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~------~~~~~----------  103 (346)
                      .+....+|.+....   ...+..+|.+.|+++.|++.+..++++    +.|++..||..      +.+..          
T Consensus       168 ADhTA~iWs~Esg~---CL~~Y~GH~GSVNsikfh~s~~L~lTa----SGD~taHIW~~av~~~vP~~~a~~~hSsEeE~  240 (481)
T KOG0300|consen  168 ADHTARIWSLESGA---CLATYTGHTGSVNSIKFHNSGLLLLTA----SGDETAHIWKAAVNWEVPSNNAPSDHSSEEEE  240 (481)
T ss_pred             cccceeEEeecccc---ceeeecccccceeeEEeccccceEEEc----cCCcchHHHHHhhcCcCCCCCCCCCCCchhhh
Confidence            34456677666643   345677999999999999988777664    68889999973      21100          


Q ss_pred             --------------CCCCcc-ceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCc
Q 019059          104 --------------QLNSPQ-LERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGML  168 (346)
Q Consensus       104 --------------~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  168 (346)
                                    ..+.+. ..++..+.+|.+.|.+..|-..|++ ++++++|.+..+||++++.....     ..+|.
T Consensus       241 e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q-~vTaSWDRTAnlwDVEtge~v~~-----LtGHd  314 (481)
T KOG0300|consen  241 EHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQ-MVTASWDRTANLWDVETGEVVNI-----LTGHD  314 (481)
T ss_pred             hcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcce-eeeeeccccceeeeeccCceecc-----ccCcc
Confidence                          011112 3467788999999999999999986 88889999999999998764333     35678


Q ss_pred             eeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcce
Q 019059          169 HYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPI  245 (346)
Q Consensus       169 ~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  245 (346)
                      ..++.++-+|..+.+++++.|.+.++||++..-.......+|   |+++.|..+.+  +++|++|.+|++||+++.+.++
T Consensus       315 ~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~--vVSgSDDrTvKvWdLrNMRspl  392 (481)
T KOG0300|consen  315 SELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR--VVSGSDDRTVKVWDLRNMRSPL  392 (481)
T ss_pred             hhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc--eeecCCCceEEEeeeccccCcc
Confidence            899999999999999999999999999999654444444577   99999998875  8999999999999999988899


Q ss_pred             eeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccc-----ccccccceeeEE
Q 019059          246 QELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLN-----SYSDYEDSVYGL  320 (346)
Q Consensus       246 ~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~  320 (346)
                      .++. ...+++.++.+..+ ..|+.--.+..|++||++.                    ..+.     .-.+|...|+|.
T Consensus       393 ATIR-tdS~~NRvavs~g~-~iIAiPhDNRqvRlfDlnG--------------------~RlaRlPrtsRqgHrRMV~c~  450 (481)
T KOG0300|consen  393 ATIR-TDSPANRVAVSKGH-PIIAIPHDNRQVRLFDLNG--------------------NRLARLPRTSRQGHRRMVTCC  450 (481)
T ss_pred             eeee-cCCccceeEeecCC-ceEEeccCCceEEEEecCC--------------------CccccCCcccccccceeeeee
Confidence            8887 47889999999887 8888888889999999985                    3333     335799999999


Q ss_pred             EeCCCCC-cEEEEeecCCeEEEeeec
Q 019059          321 AWSSREP-WIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       321 ~~~~~~~-~~l~s~~~d~~v~vw~~~  345 (346)
                      +|..+.+ .-|++++.|+.+.=|++.
T Consensus       451 AW~eehp~cnLftcGFDR~v~gW~in  476 (481)
T KOG0300|consen  451 AWLEEHPACNLFTCGFDRMVAGWKIN  476 (481)
T ss_pred             eccccCcccccccccccceeeeeEec
Confidence            9986433 137899999999999874

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.4e-26  Score=185.09  Aligned_cols=278  Identities=14%  Similarity=0.193  Sum_probs=200.6

Q ss_pred             CeEEEEEecCCCCeEEEeeeeccccceEEeeecCC-------CCceEEEEeecCCcceEEEEecCcccCCCC--------
Q 019059           42 NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPF-------DQRIFSTVFSTGESYGAAIWQIPELYGQLN--------  106 (346)
Q Consensus        42 ~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-------~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~--------  106 (346)
                      ..+-++-+.+....+....-+--+....|++|...       |++++.    |..|..|.|||++-......        
T Consensus       150 s~LEvYVyn~~e~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAi----Gtmdp~IeIWDLDI~d~v~P~~~LGs~~  225 (463)
T KOG0270|consen  150 SYLEVYVYNEEEENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAI----GTMDPEIEIWDLDIVDAVLPCVTLGSKA  225 (463)
T ss_pred             eEEEEEEEcCCCcceeEecceeccCcchhhhhhhcCCCCCCCcceEEE----eccCceeEEeccccccccccceeechhh
Confidence            44555555555443433221112234457777432       345555    46899999999973311100        


Q ss_pred             ----CccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCC-C
Q 019059          107 ----SPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD-V  181 (346)
Q Consensus       107 ----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~  181 (346)
                          ...++.-....+|++.|.+++|+..-++++++++.|.+|++||+.+++....+.     .|...|.+++|+|.. .
T Consensus       226 sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~-----~~~k~Vq~l~wh~~~p~  300 (463)
T KOG0270|consen  226 SKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT-----HHGKKVQTLEWHPYEPS  300 (463)
T ss_pred             hhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehh-----hcCCceeEEEecCCCce
Confidence                001111112346899999999999988877777899999999999987654443     255589999999965 4


Q ss_pred             cEEEEecCCeEEEEEccCCCcc-ceeec-cceeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEE
Q 019059          182 NAVAATCESSVQFWDLRSMGKT-NSIEH-AHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVC  259 (346)
Q Consensus       182 ~l~~~~~d~~i~i~d~~~~~~~-~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~  259 (346)
                      .|++|+.|+++.+.|.|..... ..++. +.|..++|+|...+.++++..||+|+-+|+|+.++++.+++.|..+|.+|+
T Consensus       301 ~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~  380 (463)
T KOG0270|consen  301 VLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLS  380 (463)
T ss_pred             EEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEE
Confidence            5778889999999999953322 22332 239999999999988999999999999999998899999999999999999


Q ss_pred             eCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeE
Q 019059          260 CNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRV  339 (346)
Q Consensus       260 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v  339 (346)
                      +++.-+.++++++.|+.|++|++...                 .+..+....-.-+...|+++.|+-...++.|+..+.+
T Consensus       381 ~n~~~p~~l~t~s~d~~Vklw~~~~~-----------------~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~  443 (463)
T KOG0270|consen  381 VNIQTPGLLSTASTDKVVKLWKFDVD-----------------SPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVL  443 (463)
T ss_pred             ecCCCCcceeeccccceEEEEeecCC-----------------CCcccccccccccceeecccCCCcceEEEecCccceE
Confidence            99998899999999999999999861                 0111111111112367889999888889999999999


Q ss_pred             EEeeec
Q 019059          340 RNHMLE  345 (346)
Q Consensus       340 ~vw~~~  345 (346)
                      +|||+-
T Consensus       444 ~vwd~~  449 (463)
T KOG0270|consen  444 RVWDIF  449 (463)
T ss_pred             EEeecc
Confidence            999974

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=9.4e-27  Score=197.87  Aligned_cols=242  Identities=14%  Similarity=0.193  Sum_probs=198.8

Q ss_pred             cccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecC--CCCcEEEEec
Q 019059           64 HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSS--GRHDKLVSID  141 (346)
Q Consensus        64 h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~  141 (346)
                      -...+.+++.+|++++|++    |..-|.++||++.         ....+..+..|+.+|.|+.|+..  +..++++++.
T Consensus       458 ~r~G~R~~~vSp~gqhLAs----GDr~GnlrVy~Lq---------~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasr  524 (1080)
T KOG1408|consen  458 SRFGFRALAVSPDGQHLAS----GDRGGNLRVYDLQ---------ELEYTCFMEAHESEILCLEYSFPVLTNKLLASASR  524 (1080)
T ss_pred             cccceEEEEECCCcceecc----cCccCceEEEEeh---------hhhhhhheecccceeEEEeecCchhhhHhhhhccC
Confidence            3457899999999999998    5788999999998         67888889999999999999843  3345555688


Q ss_pred             CCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCC--CcEEEEecCCeEEEEEccCCCccceeec-----cc--ee
Q 019059          142 EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD--VNAVAATCESSVQFWDLRSMGKTNSIEH-----AH--VR  212 (346)
Q Consensus       142 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~-----~~--v~  212 (346)
                      |..|.|||+...-..    .....+|...|+++.|...|  ..+++++.|..|.+--.+.......+..     .+  ++
T Consensus       525 dRlIHV~Dv~rny~l----~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlY  600 (1080)
T KOG1408|consen  525 DRLIHVYDVKRNYDL----VQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLY  600 (1080)
T ss_pred             CceEEEEecccccch----hhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEE
Confidence            999999999854332    23345688899999998877  6688888898776533332111122221     22  99


Q ss_pred             EEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecC---CCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCC
Q 019059          213 NVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG---HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDE  289 (346)
Q Consensus       213 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~  289 (346)
                      .++..|... ++++++.|..|+|||+.+ ++..+.|++   |.+..-.+...|.| .||++...|.++.++|..+     
T Consensus       601 Dm~Vdp~~k-~v~t~cQDrnirif~i~s-gKq~k~FKgs~~~eG~lIKv~lDPSg-iY~atScsdktl~~~Df~s-----  672 (1080)
T KOG1408|consen  601 DMAVDPTSK-LVVTVCQDRNIRIFDIES-GKQVKSFKGSRDHEGDLIKVILDPSG-IYLATSCSDKTLCFVDFVS-----  672 (1080)
T ss_pred             EeeeCCCcc-eEEEEecccceEEEeccc-cceeeeecccccCCCceEEEEECCCc-cEEEEeecCCceEEEEecc-----
Confidence            999999998 899999999999999998 556777774   66778889999999 9999999999999999999     


Q ss_pred             CCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          290 LPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                                    ++++.+..+|...|+.+.|.+|-+ .|++.+.||.|.||.+.
T Consensus       673 --------------gEcvA~m~GHsE~VTG~kF~nDCk-HlISvsgDgCIFvW~lp  713 (1080)
T KOG1408|consen  673 --------------GECVAQMTGHSEAVTGVKFLNDCK-HLISVSGDGCIFVWKLP  713 (1080)
T ss_pred             --------------chhhhhhcCcchheeeeeecccch-hheeecCCceEEEEECc
Confidence                          999999999999999999999997 88999999999999873

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=1.9e-26  Score=186.37  Aligned_cols=252  Identities=16%  Similarity=0.214  Sum_probs=201.1

Q ss_pred             EeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCC-CCc-------cceeeeee-eccCCceEEEEe
Q 019059           58 CEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQL-NSP-------QLERIAAL-DAHVGKINCVLW  128 (346)
Q Consensus        58 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~-~~~-------~~~~~~~~-~~~~~~i~~~~~  128 (346)
                      ......|.-.|.+++++|++++.+.+    +.+++|.-|++....... ..+       .+.+...- +.|...+.+++.
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsa----sk~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~av  210 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSA----SKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAV  210 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeec----CCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEE
Confidence            35566799999999999999999986    689999999987432210 000       11111112 388899999999


Q ss_pred             ecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeec
Q 019059          129 WSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH  208 (346)
Q Consensus       129 ~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  208 (346)
                      ++||++ +++++.|..|.||+.++.+....     ..+|...|.+++|-.....+++++.|..+++|++.....+.++. 
T Consensus       211 S~Dgky-latgg~d~~v~Iw~~~t~ehv~~-----~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetly-  283 (479)
T KOG0299|consen  211 SSDGKY-LATGGRDRHVQIWDCDTLEHVKV-----FKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLY-  283 (479)
T ss_pred             cCCCcE-EEecCCCceEEEecCcccchhhc-----ccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHh-
Confidence            999996 77778899999999998765433     45688899999999888889999999999999999988888777 


Q ss_pred             cc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCC
Q 019059          209 AH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTS  285 (346)
Q Consensus       209 ~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~  285 (346)
                      +|   |.+|.-..-.+ .+.+|+.|+++++|++..  .....+.+|.+.+-|++|-.+  ..|++|+.||.|.+|++.. 
T Consensus       284 GHqd~v~~IdaL~reR-~vtVGgrDrT~rlwKi~e--esqlifrg~~~sidcv~~In~--~HfvsGSdnG~IaLWs~~K-  357 (479)
T KOG0299|consen  284 GHQDGVLGIDALSRER-CVTVGGRDRTVRLWKIPE--ESQLIFRGGEGSIDCVAFIND--EHFVSGSDNGSIALWSLLK-  357 (479)
T ss_pred             CCccceeeechhcccc-eEEeccccceeEEEeccc--cceeeeeCCCCCeeeEEEecc--cceeeccCCceEEEeeecc-
Confidence            66   88888877776 777788999999999964  345567789999999999766  5799999999999999987 


Q ss_pred             CCCCCCcccccCCccccccccccccc------------cccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          286 NHDELPSESLVESPNQRANSLLNSYS------------DYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                                        .+++++..            .+..+|++++..|... ++++|+.+|.|++|.++
T Consensus       358 ------------------Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sd-L~asGS~~G~vrLW~i~  410 (479)
T KOG0299|consen  358 ------------------KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSD-LLASGSWSGCVRLWKIE  410 (479)
T ss_pred             ------------------cCceeEeeccccccCCccccccccceeeeEecccCc-eEEecCCCCceEEEEec
Confidence                              33433321            1224899999999886 99999999999999875

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=1.4e-26  Score=201.93  Aligned_cols=230  Identities=21%  Similarity=0.328  Sum_probs=195.5

Q ss_pred             cccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeee-eeccCCceEEEEeecCCCCcEEEEecC
Q 019059           64 HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAA-LDAHVGKINCVLWWSSGRHDKLVSIDE  142 (346)
Q Consensus        64 h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~d  142 (346)
                      +...+.+..|.  +.++++    +..+.+|++|+..         ++..+.. +.+|.+.|.++++.. +..++++++.|
T Consensus       207 ~~~~~~~~q~~--~~~~~~----~s~~~tl~~~~~~---------~~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D  270 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKS----GSDDSTLHLWDLN---------NGYLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTD  270 (537)
T ss_pred             Ccchhhhheee--cCeEEe----cCCCceeEEeecc---------cceEEEeeccCCCCCceeEEEec-CCCEEEEEecC
Confidence            55778888888  456666    4789999999988         6666666 999999999999987 44468888899


Q ss_pred             CeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCC
Q 019059          143 ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTK  219 (346)
Q Consensus       143 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~  219 (346)
                      .++++||..+++....+.     +|...+.++...+  ..+++|+.|.+|++|++.++..+..+. +|   |+++..+  
T Consensus       271 ~t~rvWd~~sg~C~~~l~-----gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~l~~-~h~~~V~~v~~~--  340 (537)
T KOG0274|consen  271 KTERVWDCSTGECTHSLQ-----GHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLNLLR-GHTGPVNCVQLD--  340 (537)
T ss_pred             CcEEeEecCCCcEEEEec-----CCCceEEEEEccC--ceEeeccCCceEEEEeccCcceEEEec-cccccEEEEEec--
Confidence            999999999887655553     5777888887653  567777899999999999999998887 36   9999998  


Q ss_pred             CCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCc
Q 019059          220 KKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESP  299 (346)
Q Consensus       220 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  299 (346)
                      ++ ++++|+.|++|++||++. .++++.+.+|...|.++.+.+.  ..+++|+.|++|++||+++               
T Consensus       341 ~~-~lvsgs~d~~v~VW~~~~-~~cl~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~---------------  401 (537)
T KOG0274|consen  341 EP-LLVSGSYDGTVKVWDPRT-GKCLKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRT---------------  401 (537)
T ss_pred             CC-EEEEEecCceEEEEEhhh-ceeeeeecCCcceEEEEEecCc--ceEEeeeeccceEeecCCc---------------
Confidence            54 899999999999999997 6799999999999999988775  5799999999999999998               


Q ss_pred             ccccc-ccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          300 NQRAN-SLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       300 ~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                          . +++.++.+|.+-|.++.+.  ++ +|++++.|+.|++||.+
T Consensus       402 ----~~~c~~tl~~h~~~v~~l~~~--~~-~Lvs~~aD~~Ik~WD~~  441 (537)
T KOG0274|consen  402 ----KRKCIHTLQGHTSLVSSLLLR--DN-FLVSSSADGTIKLWDAE  441 (537)
T ss_pred             ----hhhhhhhhcCCcccccccccc--cc-eeEeccccccEEEeecc
Confidence                6 8999999999988777665  43 89999999999999874

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.95  E-value=3.2e-26  Score=192.11  Aligned_cols=284  Identities=18%  Similarity=0.253  Sum_probs=200.8

Q ss_pred             CCCcceEEEeecccCCCCeEEEEEecCCCCe---EEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcc
Q 019059           25 DTDHTSFLTGTLSLKEENEVHLLRLSSGGTE---LICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPEL  101 (346)
Q Consensus        25 ~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~  101 (346)
                      ....+.|+++    .+++.|.+.+.....-.   ........|.+.|.++.|.|-...|+++    +.|.++++||+.  
T Consensus        61 ~n~eHiLava----dE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsa----sGDsT~r~Wdvk--  130 (720)
T KOG0321|consen   61 PNKEHILAVA----DEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSA----SGDSTIRPWDVK--  130 (720)
T ss_pred             CCccceEEEe----cCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEc----cCCceeeeeeec--
Confidence            3455666665    46677777655432211   1124566899999999999944455554    678899999998  


Q ss_pred             cCCCCCccceeeee--eeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCc-------------------e--
Q 019059          102 YGQLNSPQLERIAA--LDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNA-------------------Q--  158 (346)
Q Consensus       102 ~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~-------------------~--  158 (346)
                             .......  +.+|.+.|.+++|.+.++.++++|+.||.|.|||++......                   +  
T Consensus       131 -------~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~  203 (720)
T KOG0321|consen  131 -------TSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPL  203 (720)
T ss_pred             -------cceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchh
Confidence                   3444433  779999999999999999888888999999999987443000                   0  


Q ss_pred             -eeecccCCCceeeEE---EEeCCCCCcEEEEec-CCeEEEEEccCCCccceee---------c---cc-eeEEEeCCCC
Q 019059          159 -VQSKQSSGMLHYLSG---GAWDPHDVNAVAATC-ESSVQFWDLRSMGKTNSIE---------H---AH-VRNVDYDTKK  220 (346)
Q Consensus       159 -~~~~~~~~~~~~v~~---~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~---------~---~~-v~~~~~~~~~  220 (346)
                       -.......+...+.+   +.+..|...|++++. |+.|+|||++.........         .   .+ +.++..+..|
T Consensus       204 ~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG  283 (720)
T KOG0321|consen  204 KKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG  283 (720)
T ss_pred             hccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCC
Confidence             000011122223333   444557788888886 9999999999765432221         0   11 8888888889


Q ss_pred             CcEEEEecCCCeEEEEEcccCCc-ceeeecCCCcce--EEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccC
Q 019059          221 KHLLVTAADESGIHLWDLRMLKA-PIQELPGHTHWT--WAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVE  297 (346)
Q Consensus       221 ~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v--~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  297 (346)
                      .+++|.+ .|+.|++|+++.... ++..+.++...-  ..-..+|++ .++++|+.|...++|.+..             
T Consensus       284 t~L~AsC-tD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~-~~l~SgSsd~~ayiw~vs~-------------  348 (720)
T KOG0321|consen  284 TYLFASC-TDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDD-CSLLSGSSDEQAYIWVVSS-------------  348 (720)
T ss_pred             CeEEEEe-cCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCC-ceEeccCCCcceeeeeecC-------------
Confidence            8555555 599999999986543 455555443221  122478999 9999999999999999998             


Q ss_pred             CccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          298 SPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                           .......+.+|.-.|++++|.|..-.-++++++|.++++|++.
T Consensus       349 -----~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~  391 (720)
T KOG0321|consen  349 -----PEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLS  391 (720)
T ss_pred             -----ccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEecc
Confidence                 3556677889999999999998654458889999999999974

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.95  E-value=2e-25  Score=186.92  Aligned_cols=263  Identities=11%  Similarity=0.122  Sum_probs=183.4

Q ss_pred             CCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeec
Q 019059           39 KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA  118 (346)
Q Consensus        39 ~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~  118 (346)
                      ..++.+.+|++...+   ....+..+ ..+.+++|+|+++.++++   ++.++.|.+||+.         ..+.+..+..
T Consensus         8 ~~d~~v~~~d~~t~~---~~~~~~~~-~~~~~l~~~~dg~~l~~~---~~~~~~v~~~d~~---------~~~~~~~~~~   71 (300)
T TIGR03866         8 EKDNTISVIDTATLE---VTRTFPVG-QRPRGITLSKDGKLLYVC---ASDSDTIQVIDLA---------TGEVIGTLPS   71 (300)
T ss_pred             cCCCEEEEEECCCCc---eEEEEECC-CCCCceEECCCCCEEEEE---ECCCCeEEEEECC---------CCcEEEeccC
Confidence            457889999876543   12333333 447789999999887665   3678899999987         4555555544


Q ss_pred             cCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCC-eEEEEEc
Q 019059          119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCES-SVQFWDL  197 (346)
Q Consensus       119 ~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~i~d~  197 (346)
                      +.. +..++|+|+++.++++++.++.+++||+.+.+....+..      ...+.+++|+|++..++++..++ .+.+||.
T Consensus        72 ~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~------~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~  144 (300)
T TIGR03866        72 GPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV------GVEPEGMAVSPDGKIVVNTSETTNMAHFIDT  144 (300)
T ss_pred             CCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC------CCCcceEEECCCCCEEEEEecCCCeEEEEeC
Confidence            433 567899999986444556689999999986543222211      12467899999999998888764 5778899


Q ss_pred             cCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCC-------cceEEEEeCCCCCcEE-
Q 019059          198 RSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHT-------HWTWAVCCNPEYDGFI-  268 (346)
Q Consensus       198 ~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------~~v~~v~~~~~~~~~l-  268 (346)
                      ++++....+.... +.+++|+|++..+++++..++.|++||+++ .+.+..+..+.       .....++|+|++ .++ 
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg-~~~~  222 (300)
T TIGR03866       145 KTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVAT-RKVIKKITFEIPGVHPEAVQPVGIKLTKDG-KTAF  222 (300)
T ss_pred             CCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCc-ceeeeeeeecccccccccCCccceEECCCC-CEEE
Confidence            8877665554344 888999999984445666789999999987 33444443221       123468899999 654 


Q ss_pred             EEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeecC
Q 019059          269 LSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLEK  346 (346)
Q Consensus       269 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~~  346 (346)
                      ++.+.++.+.+||+++                   ++.+..+. +...+.+++|+|+++.++++.+.++.|++||+++
T Consensus       223 ~~~~~~~~i~v~d~~~-------------------~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~  280 (300)
T TIGR03866       223 VALGPANRVAVVDAKT-------------------YEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA  280 (300)
T ss_pred             EEcCCCCeEEEEECCC-------------------CcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence            4445577899999987                   55554432 3346899999999984444446799999999863

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=2.3e-26  Score=203.93  Aligned_cols=252  Identities=17%  Similarity=0.272  Sum_probs=198.8

Q ss_pred             cccceEEeeecCCCCceEEEEeecC--CcceEEEEecCcccCCC---CCccceeeeeeeccCCceEEEEeecCCCCcEEE
Q 019059           64 HPNEIWDLSSCPFDQRIFSTVFSTG--ESYGAAIWQIPELYGQL---NSPQLERIAALDAHVGKINCVLWWSSGRHDKLV  138 (346)
Q Consensus        64 h~~~v~~~~~~~~~~~l~~~~~~~~--~d~~i~vw~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  138 (346)
                      +...|.++..+|++..++++    |  .|+.+.+|+.+.-....   +..-.+.+.+...|.+.|.|+.|+|||++ +++
T Consensus        12 ~~~~IfSIdv~pdg~~~aTg----Gq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~-lAs   86 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVKFATG----GQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSY-LAS   86 (942)
T ss_pred             CCeeEEEEEecCCceeEecC----CccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCe-Eee
Confidence            34679999999999988884    5  78888999987442211   11123566778899999999999999996 777


Q ss_pred             EecCCeEEEEEcCCCCCCcee--------------eecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccc
Q 019059          139 SIDEENIFLWSLDCSNKNAQV--------------QSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN  204 (346)
Q Consensus       139 ~~~d~~i~vwd~~~~~~~~~~--------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  204 (346)
                      |++|+.|.||+.... .....              ......+|...|..++|+|++.++++++.|++|.+|+.++.+...
T Consensus        87 GSDD~~v~iW~~~~~-~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~  165 (942)
T KOG0973|consen   87 GSDDRLVMIWERAEI-GSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLK  165 (942)
T ss_pred             ccCcceEEEeeeccc-CCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeee
Confidence            789999999998731 00000              111245688899999999999999999999999999999998777


Q ss_pred             eeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCC------CcceEEEEeCCCCCcEEEEecC--
Q 019059          205 SIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGH------THWTWAVCCNPEYDGFILSAGT--  273 (346)
Q Consensus       205 ~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~~v~~v~~~~~~~~~l~s~~~--  273 (346)
                      .+. +|   |..+.|+|-|+ +|++-+.|++|++|.+.+.+ ..+.+..+      ..-+..+.||||| .+|++...  
T Consensus       166 vl~-~H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~dw~-i~k~It~pf~~~~~~T~f~RlSWSPDG-~~las~nA~n  241 (942)
T KOG0973|consen  166 VLR-GHQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSDWG-IEKSITKPFEESPLTTFFLRLSWSPDG-HHLASPNAVN  241 (942)
T ss_pred             eee-cccccccceEECCccC-eeeeecCCceEEEEEcccce-eeEeeccchhhCCCcceeeecccCCCc-Ceecchhhcc
Confidence            777 66   99999999999 89999999999999976532 34444332      2456889999999 99988643  


Q ss_pred             --CCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCC--------CCc--------EEEEeec
Q 019059          274 --DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSR--------EPW--------IFASLSY  335 (346)
Q Consensus       274 --d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------~~~--------~l~s~~~  335 (346)
                        -.++.|.+..+                   .+.-..+-||.+++..++|+|.        |..        ++|+||.
T Consensus       242 ~~~~~~~IieR~t-------------------Wk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSq  302 (942)
T KOG0973|consen  242 GGKSTIAIIERGT-------------------WKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQ  302 (942)
T ss_pred             CCcceeEEEecCC-------------------ceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecC
Confidence              23788888887                   7888889999999999999981        111        7899999


Q ss_pred             CCeEEEeee
Q 019059          336 DGRVRNHML  344 (346)
Q Consensus       336 d~~v~vw~~  344 (346)
                      |++|-||..
T Consensus       303 DrSlSVW~T  311 (942)
T KOG0973|consen  303 DRSLSVWNT  311 (942)
T ss_pred             CccEEEEec
Confidence            999999974

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.4e-26  Score=187.44  Aligned_cols=248  Identities=16%  Similarity=0.233  Sum_probs=202.4

Q ss_pred             CeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCC
Q 019059           42 NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVG  121 (346)
Q Consensus        42 ~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~  121 (346)
                      ..+.+|.+.+...   .....--+++|.+++-+|.|.+|+++    +..+.|.+|.+.         ++..+..+.+|-.
T Consensus        61 p~l~vw~i~k~~~---~~q~~v~Pg~v~al~s~n~G~~l~ag----~i~g~lYlWels---------sG~LL~v~~aHYQ  124 (476)
T KOG0646|consen   61 PLLHVWEILKKDQ---VVQYIVLPGPVHALASSNLGYFLLAG----TISGNLYLWELS---------SGILLNVLSAHYQ  124 (476)
T ss_pred             ccccccccCchhh---hhhhcccccceeeeecCCCceEEEee----cccCcEEEEEec---------cccHHHHHHhhcc
Confidence            3666676655322   12334467899999999999888873    588899999999         8999999999999


Q ss_pred             ceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCC----CceeeecccCCCceeeEEEEeCCC--CCcEEEEecCCeEEEE
Q 019059          122 KINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNK----NAQVQSKQSSGMLHYLSGGAWDPH--DVNAVAATCESSVQFW  195 (346)
Q Consensus       122 ~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~  195 (346)
                      .|+|+.|+.||.+ +++++.||.|.+|.+..--.    ..........+|..+|+++...+-  ...+++++.|.++++|
T Consensus       125 ~ITcL~fs~dgs~-iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~w  203 (476)
T KOG0646|consen  125 SITCLKFSDDGSH-IITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLW  203 (476)
T ss_pred             ceeEEEEeCCCcE-EEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEE
Confidence            9999999999995 88889999999999753211    111222335678889999988764  3569999999999999


Q ss_pred             EccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCC---------------cceeeecCCCc--ceEE
Q 019059          196 DLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK---------------APIQELPGHTH--WTWA  257 (346)
Q Consensus       196 d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---------------~~~~~~~~~~~--~v~~  257 (346)
                      |+..+..+.++..+. +.+++.+|.+. .+++|+.+|.|.+.++.+..               ..+..+.+|.+  .|+|
T Consensus       204 dlS~g~LLlti~fp~si~av~lDpae~-~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITc  282 (476)
T KOG0646|consen  204 DLSLGVLLLTITFPSSIKAVALDPAER-VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITC  282 (476)
T ss_pred             EeccceeeEEEecCCcceeEEEccccc-EEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeE
Confidence            999999988887666 99999999998 89999999999988876432               13456678888  9999


Q ss_pred             EEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCC
Q 019059          258 VCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREP  327 (346)
Q Consensus       258 v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  327 (346)
                      ++.+-|| .+|++|+.||.|+|||+.+                   .++++++....++|+.+.+.|-.+
T Consensus       283 Lais~Dg-tlLlSGd~dg~VcvWdi~S-------------------~Q~iRtl~~~kgpVtnL~i~~~~~  332 (476)
T KOG0646|consen  283 LAISTDG-TLLLSGDEDGKVCVWDIYS-------------------KQCIRTLQTSKGPVTNLQINPLER  332 (476)
T ss_pred             EEEecCc-cEEEeeCCCCCEEEEecch-------------------HHHHHHHhhhccccceeEeecccc
Confidence            9999999 9999999999999999998                   888888877778899999866543

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=3.1e-26  Score=198.19  Aligned_cols=242  Identities=16%  Similarity=0.256  Sum_probs=193.7

Q ss_pred             eeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCC----------------------------C------------
Q 019059           15 QARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGG----------------------------T------------   54 (346)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~----------------------------~------------   54 (346)
                      +..+|.++++++++.-++.|    ++|+.|++|.+-..+                            .            
T Consensus       266 h~gaIw~mKFS~DGKyLAsa----GeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~  341 (712)
T KOG0283|consen  266 HKGAIWAMKFSHDGKYLASA----GEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK  341 (712)
T ss_pred             cCCcEEEEEeCCCCceeeec----CCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence            34678889999999999887    689999999886600                            0            


Q ss_pred             -----------------eEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeee
Q 019059           55 -----------------ELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD  117 (346)
Q Consensus        55 -----------------~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~  117 (346)
                                       ......+.+|.+.|.+|.||.+ .+|+++    +.|.+|+||++.         ...+++.| 
T Consensus       342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSS----SMDKTVRLWh~~---------~~~CL~~F-  406 (712)
T KOG0283|consen  342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSS----SMDKTVRLWHPG---------RKECLKVF-  406 (712)
T ss_pred             ccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEec----cccccEEeecCC---------CcceeeEE-
Confidence                             0000347899999999999984 577775    799999999998         67888888 


Q ss_pred             ccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEc
Q 019059          118 AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDL  197 (346)
Q Consensus       118 ~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~  197 (346)
                      .|.+-|+|++|+|-....+++|+-|+.|+||++...+..   ...   ....-|++++|.|+|+..++|+.+|.+++|+.
T Consensus       407 ~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv---~W~---Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t  480 (712)
T KOG0283|consen  407 SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVV---DWN---DLRDLITAVCYSPDGKGAVIGTFNGYCRFYDT  480 (712)
T ss_pred             ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeE---eeh---hhhhhheeEEeccCCceEEEEEeccEEEEEEc
Confidence            899999999999988877999999999999999854321   111   12348999999999999999999999999999


Q ss_pred             cCCCccceee---------ccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcc--eEEEEeCCCCC
Q 019059          198 RSMGKTNSIE---------HAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHW--TWAVCCNPEYD  265 (346)
Q Consensus       198 ~~~~~~~~~~---------~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--v~~v~~~~~~~  265 (346)
                      ...+....+.         .++ |+.+.|.|.....+++.+.|..|+|+|.+. ..++..|+++...  -....|+.+| 
T Consensus       481 ~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~-~~lv~KfKG~~n~~SQ~~Asfs~Dg-  558 (712)
T KOG0283|consen  481 EGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRD-KDLVHKFKGFRNTSSQISASFSSDG-  558 (712)
T ss_pred             cCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccc-hhhhhhhcccccCCcceeeeEccCC-
Confidence            8766543332         122 999999987765688888999999999986 5678888875532  3456799999 


Q ss_pred             cEEEEecCCCeEEEEecC
Q 019059          266 GFILSAGTDSTVNLWLVS  283 (346)
Q Consensus       266 ~~l~s~~~d~~i~iwd~~  283 (346)
                      ++|+++++|..|+||+..
T Consensus       559 k~IVs~seDs~VYiW~~~  576 (712)
T KOG0283|consen  559 KHIVSASEDSWVYIWKND  576 (712)
T ss_pred             CEEEEeecCceEEEEeCC
Confidence            999999999999999973

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.95  E-value=2.8e-26  Score=176.92  Aligned_cols=242  Identities=15%  Similarity=0.279  Sum_probs=191.6

Q ss_pred             ccCCCCcceEEEeecccCCCCeEEEEEecC---------------CCCeEEEeeeeccccceEEeeecCCCCceEEEEee
Q 019059           22 VKADTDHTSFLTGTLSLKEENEVHLLRLSS---------------GGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFS   86 (346)
Q Consensus        22 ~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~---------------~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~   86 (346)
                      ..+++++.-++.|+    .+..|.++++..               ......+++++.|.++|+++.|+|....|++    
T Consensus       118 aafs~DG~lvATGs----aD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS----  189 (430)
T KOG0640|consen  118 AAFSPDGSLVATGS----ADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILIS----  189 (430)
T ss_pred             eeeCCCCcEEEccC----CcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEe----
Confidence            44677888787774    456778877661               1122455889999999999999998877777    


Q ss_pred             cCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCC
Q 019059           87 TGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG  166 (346)
Q Consensus        87 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~  166 (346)
                      ++.|++|+++|+.+       +..+.....-....+|.++.|+|.|.. ++++.+...+++||+++-+......  ....
T Consensus       190 ~srD~tvKlFDfsK-------~saKrA~K~~qd~~~vrsiSfHPsGef-llvgTdHp~~rlYdv~T~Qcfvsan--Pd~q  259 (430)
T KOG0640|consen  190 GSRDNTVKLFDFSK-------TSAKRAFKVFQDTEPVRSISFHPSGEF-LLVGTDHPTLRLYDVNTYQCFVSAN--PDDQ  259 (430)
T ss_pred             ccCCCeEEEEeccc-------HHHHHHHHHhhccceeeeEeecCCCce-EEEecCCCceeEEeccceeEeeecC--cccc
Confidence            48999999999982       122222222234578999999999994 6677778899999999866443333  3456


Q ss_pred             CceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc----eeEEEeCCCCCcEEEEecCCCeEEEEEcccCC
Q 019059          167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH----VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK  242 (346)
Q Consensus       167 ~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~----v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  242 (346)
                      |...|+++.+++.++..++++.||.|++||--+++++.++..+|    |.+..|..+++ ++++.+.|..+++|.+.+.+
T Consensus       260 ht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~k-yiLsSG~DS~vkLWEi~t~R  338 (430)
T KOG0640|consen  260 HTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGK-YILSSGKDSTVKLWEISTGR  338 (430)
T ss_pred             cccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCe-EEeecCCcceeeeeeecCCc
Confidence            88899999999999999999999999999999999999999888    99999999999 78888999999999987633


Q ss_pred             cceeee-------------------------------------------------cCCCcceEEEEeCCCCCcEEEEecC
Q 019059          243 APIQEL-------------------------------------------------PGHTHWTWAVCCNPEYDGFILSAGT  273 (346)
Q Consensus       243 ~~~~~~-------------------------------------------------~~~~~~v~~v~~~~~~~~~l~s~~~  273 (346)
                       ++..+                                                 .+|.+.+..+.-+|.+ ..+++++.
T Consensus       339 -~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~-p~FmTcsd  416 (430)
T KOG0640|consen  339 -MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVE-PAFMTCSD  416 (430)
T ss_pred             -eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCC-Cceeeecc
Confidence             22222                                                 2578888888889998 88999999


Q ss_pred             CCeEEEEecCC
Q 019059          274 DSTVNLWLVST  284 (346)
Q Consensus       274 d~~i~iwd~~~  284 (346)
                      |-.+|+|-.+.
T Consensus       417 D~raRFWyrr~  427 (430)
T KOG0640|consen  417 DFRARFWYRRV  427 (430)
T ss_pred             cceeeeeeecc
Confidence            99999997653

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=9.9e-26  Score=189.88  Aligned_cols=238  Identities=18%  Similarity=0.321  Sum_probs=192.6

Q ss_pred             eEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeec-cccceEEeeecCCCCceEEEEeecCCcceEEE
Q 019059           17 RCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFS-HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAI   95 (346)
Q Consensus        17 ~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~v   95 (346)
                      ..++++.+++++.-|++|+    .++.+.+|+....+.   ...+.+ |...|-+++|.   ..++++   |+.++.|..
T Consensus       218 ~~vtSv~ws~~G~~LavG~----~~g~v~iwD~~~~k~---~~~~~~~h~~rvg~laW~---~~~lss---Gsr~~~I~~  284 (484)
T KOG0305|consen  218 ELVTSVKWSPDGSHLAVGT----SDGTVQIWDVKEQKK---TRTLRGSHASRVGSLAWN---SSVLSS---GSRDGKILN  284 (484)
T ss_pred             CceEEEEECCCCCEEEEee----cCCeEEEEehhhccc---cccccCCcCceeEEEecc---CceEEE---ecCCCcEEE
Confidence            4566777888999999996    578999998877542   344555 99999999998   344454   689999999


Q ss_pred             EecCcccCCCCCccceee-eeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEE
Q 019059           96 WQIPELYGQLNSPQLERI-AALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGG  174 (346)
Q Consensus        96 w~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~  174 (346)
                      +|+..         .+.. ..+.+|...|..++|++|+.+ +++++.|+.+.|||.........+.     .|...|..+
T Consensus       285 ~dvR~---------~~~~~~~~~~H~qeVCgLkws~d~~~-lASGgnDN~~~Iwd~~~~~p~~~~~-----~H~aAVKA~  349 (484)
T KOG0305|consen  285 HDVRI---------SQHVVSTLQGHRQEVCGLKWSPDGNQ-LASGGNDNVVFIWDGLSPEPKFTFT-----EHTAAVKAL  349 (484)
T ss_pred             EEEec---------chhhhhhhhcccceeeeeEECCCCCe-eccCCCccceEeccCCCccccEEEe-----ccceeeeEe
Confidence            99982         2222 248899999999999999995 6666889999999996544433333     377799999


Q ss_pred             EeCCCCCc-EEEEe--cCCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEE-ecCCCeEEEEEcccCCcceeeec
Q 019059          175 AWDPHDVN-AVAAT--CESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVT-AADESGIHLWDLRMLKAPIQELP  249 (346)
Q Consensus       175 ~~~~~~~~-l~~~~--~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~  249 (346)
                      +|+|-... ||+|+  .|+.|++||..++..+..+..+. |.+|.|++..+.++.+ |..+..|.||+..+ ..++..+.
T Consensus       350 awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps-~~~~~~l~  428 (484)
T KOG0305|consen  350 AWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS-MKLVAELL  428 (484)
T ss_pred             eeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc-cceeeeec
Confidence            99996555 55554  49999999999999999888666 9999999998744444 44567899999988 44788899


Q ss_pred             CCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          250 GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       250 ~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      +|...|..++++|+| ..+++|+.|.++++|++-.
T Consensus       429 gH~~RVl~la~SPdg-~~i~t~a~DETlrfw~~f~  462 (484)
T KOG0305|consen  429 GHTSRVLYLALSPDG-ETIVTGAADETLRFWNLFD  462 (484)
T ss_pred             CCcceeEEEEECCCC-CEEEEecccCcEEeccccC
Confidence            999999999999999 9999999999999999976

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=3.4e-25  Score=171.20  Aligned_cols=218  Identities=19%  Similarity=0.312  Sum_probs=182.1

Q ss_pred             CCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCC--ceEEEEeecCCcceEEEEecCcccCCCCCccceeeeee
Q 019059           39 KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQ--RIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL  116 (346)
Q Consensus        39 ~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~  116 (346)
                      +.+..|+++++....   ....+..|.+.|+++.|.+.-.  +|+++    +.||.|.+|+..         .+..+.++
T Consensus        60 ssDetI~IYDm~k~~---qlg~ll~HagsitaL~F~~~~S~shLlS~----sdDG~i~iw~~~---------~W~~~~sl  123 (362)
T KOG0294|consen   60 SSDETIHIYDMRKRK---QLGILLSHAGSITALKFYPPLSKSHLLSG----SDDGHIIIWRVG---------SWELLKSL  123 (362)
T ss_pred             CCCCcEEEEeccchh---hhcceeccccceEEEEecCCcchhheeee----cCCCcEEEEEcC---------CeEEeeee
Confidence            567889999887643   3456678999999999998765  88885    799999999998         89999999


Q ss_pred             eccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEE
Q 019059          117 DAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWD  196 (346)
Q Consensus       117 ~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d  196 (346)
                      ++|.+.|+.++.+|.++ +.++.+.|+.+++||+-.++.........      ..+.+.|+|.|.+++.++.+ .|-+|.
T Consensus       124 K~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr~a~v~~L~~------~at~v~w~~~Gd~F~v~~~~-~i~i~q  195 (362)
T KOG0294|consen  124 KAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGRVAFVLNLKN------KATLVSWSPQGDHFVVSGRN-KIDIYQ  195 (362)
T ss_pred             cccccccceeEecCCCc-eEEEEcCCceeeeehhhcCccceeeccCC------cceeeEEcCCCCEEEEEecc-EEEEEe
Confidence            99999999999999999 56666899999999999876544433322      34558999999988888765 589999


Q ss_pred             ccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEe--CCCCCcEEEEecC
Q 019059          197 LRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCC--NPEYDGFILSAGT  273 (346)
Q Consensus       197 ~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~--~~~~~~~l~s~~~  273 (346)
                      +.+......+..+. +.++.|...+  .+++|.+|+.|++||... ..+...+.+|+..|-.+.+  .|++ .+|+++|.
T Consensus       196 ~d~A~v~~~i~~~~r~l~~~~l~~~--~L~vG~d~~~i~~~D~ds-~~~~~~~~AH~~RVK~i~~~~~~~~-~~lvTaSS  271 (362)
T KOG0294|consen  196 LDNASVFREIENPKRILCATFLDGS--ELLVGGDNEWISLKDTDS-DTPLTEFLAHENRVKDIASYTNPEH-EYLVTASS  271 (362)
T ss_pred             cccHhHhhhhhccccceeeeecCCc--eEEEecCCceEEEeccCC-CccceeeecchhheeeeEEEecCCc-eEEEEecc
Confidence            99888777776555 8888887655  688999999999999987 6689999999999999884  5667 89999999


Q ss_pred             CCeEEEEecCC
Q 019059          274 DSTVNLWLVST  284 (346)
Q Consensus       274 d~~i~iwd~~~  284 (346)
                      ||.|+|||++.
T Consensus       272 DG~I~vWd~~~  282 (362)
T KOG0294|consen  272 DGFIKVWDIDM  282 (362)
T ss_pred             CceEEEEEccc
Confidence            99999999987

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.4e-26  Score=198.19  Aligned_cols=230  Identities=15%  Similarity=0.205  Sum_probs=190.2

Q ss_pred             CCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeec
Q 019059           39 KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA  118 (346)
Q Consensus        39 ~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~  118 (346)
                      ...+.|.+|++...........+..|...|+++.|++..+.++.+   |++||.|++||++         ..+...++.+
T Consensus       107 s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliS---GSQDg~vK~~DlR---------~~~S~~t~~~  174 (839)
T KOG0269|consen  107 STNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILIS---GSQDGTVKCWDLR---------SKKSKSTFRS  174 (839)
T ss_pred             cCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEe---cCCCceEEEEeee---------cccccccccc
Confidence            467889999998854444446678899999999999999998887   6999999999998         4555566777


Q ss_pred             cCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEcc
Q 019059          119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLR  198 (346)
Q Consensus       119 ~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~  198 (346)
                      ..+.|..+.|+|...+.++++.+.|.+++||++.....    ......|..+|.++.|+|+..+|++|+.|+.|+|||+.
T Consensus       175 nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~----~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t  250 (839)
T KOG0269|consen  175 NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRC----EKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMT  250 (839)
T ss_pred             cchhhhceeeccCCCceEEEecCCceEEEeeccCchhH----HHHhhcccCceEEEeecCCCceeeecCCCccEEEEecc
Confidence            88899999999988776777788899999999964432    22345688899999999999999999999999999998


Q ss_pred             CCCc--cceeeccc-eeEEEeCCCCCcEEEEec--CCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecC
Q 019059          199 SMGK--TNSIEHAH-VRNVDYDTKKKHLLVTAA--DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGT  273 (346)
Q Consensus       199 ~~~~--~~~~~~~~-v~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~  273 (346)
                      +.+.  ..++.... +..++|-|..++.|++++  .|-.|+|||++.+--|..++..|...++.++|.......|.+++.
T Consensus       251 ~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sK  330 (839)
T KOG0269|consen  251 DSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSK  330 (839)
T ss_pred             CCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecC
Confidence            7654  34444344 999999999998888876  567899999998777889999999999999998755578999999


Q ss_pred             CCeEEEEecCC
Q 019059          274 DSTVNLWLVST  284 (346)
Q Consensus       274 d~~i~iwd~~~  284 (346)
                      |++|..-.++.
T Consensus       331 D~tv~qh~~kn  341 (839)
T KOG0269|consen  331 DGTVLQHLFKN  341 (839)
T ss_pred             ccHHHHhhhhc
Confidence            99887665554

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=4.4e-25  Score=178.64  Aligned_cols=286  Identities=12%  Similarity=0.125  Sum_probs=222.7

Q ss_pred             eeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEE
Q 019059           16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAI   95 (346)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~v   95 (346)
                      .+.+.++.+.|...-++++    +.++.+.++.++...++.. ..+.--..+|.+++|.|+|...+++   +|....+..
T Consensus       213 ~~~I~sv~FHp~~plllva----G~d~~lrifqvDGk~N~~l-qS~~l~~fPi~~a~f~p~G~~~i~~---s~rrky~ys  284 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVA----GLDGTLRIFQVDGKVNPKL-QSIHLEKFPIQKAEFAPNGHSVIFT---SGRRKYLYS  284 (514)
T ss_pred             cCCceEEEecCCCceEEEe----cCCCcEEEEEecCccChhh-eeeeeccCccceeeecCCCceEEEe---cccceEEEE
Confidence            3567788889888888876    5689999999998766544 3444456799999999999944444   478889999


Q ss_pred             EecCcccCCCCCccceeeeeeeccC-CceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEE
Q 019059           96 WQIPELYGQLNSPQLERIAALDAHV-GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGG  174 (346)
Q Consensus        96 w~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~  174 (346)
                      ||+.+.       ....+....++. ..+.....+++++. ++..|..|.|.+....+++....+....      .+..+
T Consensus       285 yDle~a-------k~~k~~~~~g~e~~~~e~FeVShd~~f-ia~~G~~G~I~lLhakT~eli~s~KieG------~v~~~  350 (514)
T KOG2055|consen  285 YDLETA-------KVTKLKPPYGVEEKSMERFEVSHDSNF-IAIAGNNGHIHLLHAKTKELITSFKIEG------VVSDF  350 (514)
T ss_pred             eecccc-------ccccccCCCCcccchhheeEecCCCCe-EEEcccCceEEeehhhhhhhhheeeecc------EEeeE
Confidence            999832       233444444543 45777888999994 5555779999999998877655555432      89999


Q ss_pred             EeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccC-----Cccee
Q 019059          175 AWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRML-----KAPIQ  246 (346)
Q Consensus       175 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~  246 (346)
                      .|+.+++.|++.+.+|.|.+||++...+++.+....   -++++.++++. +||+|+..|.|.|||..+.     .+|+.
T Consensus       351 ~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~-ylA~GS~~GiVNIYd~~s~~~s~~PkPik  429 (514)
T KOG2055|consen  351 TFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGS-YLATGSDSGIVNIYDGNSCFASTNPKPIK  429 (514)
T ss_pred             EEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCc-eEEeccCcceEEEeccchhhccCCCCchh
Confidence            999999999999999999999999999888887443   67788889998 9999999999999996532     34777


Q ss_pred             eecCCCcceEEEEeCCCCCcEEEEecC--CCeEEEEecCCCCCCCCCcccccCCcccccccccccccc---ccceeeEEE
Q 019059          247 ELPGHTHWTWAVCCNPEYDGFILSAGT--DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD---YEDSVYGLA  321 (346)
Q Consensus       247 ~~~~~~~~v~~v~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~  321 (346)
                      .+..-...|+++.|+|+. ++||.+|.  +..+++-.+.+                   ......++.   .-+.|+|++
T Consensus       430 ~~dNLtt~Itsl~Fn~d~-qiLAiaS~~~knalrLVHvPS-------------------~TVFsNfP~~n~~vg~vtc~a  489 (514)
T KOG2055|consen  430 TVDNLTTAITSLQFNHDA-QILAIASRVKKNALRLVHVPS-------------------CTVFSNFPTSNTKVGHVTCMA  489 (514)
T ss_pred             hhhhhheeeeeeeeCcch-hhhhhhhhccccceEEEeccc-------------------eeeeccCCCCCCcccceEEEE
Confidence            787778899999999999 89888875  66899888776                   222222221   223489999


Q ss_pred             eCCCCCcEEEEeecCCeEEEeeec
Q 019059          322 WSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       322 ~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      |+|.+. +||.|-.+|+|.+|.|.
T Consensus       490 FSP~sG-~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  490 FSPNSG-YLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             ecCCCc-eEEeecCCCceeeEeec
Confidence            999987 99999999999999874

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.94  E-value=7.1e-26  Score=178.85  Aligned_cols=211  Identities=16%  Similarity=0.297  Sum_probs=165.8

Q ss_pred             eccCCceEEEEeecCCCCcEEEE-ecCCeEEEEEcCCCCCC-------ce----eeecccCCCceeeEEEEeCCCCCc-E
Q 019059          117 DAHVGKINCVLWWSSGRHDKLVS-IDEENIFLWSLDCSNKN-------AQ----VQSKQSSGMLHYLSGGAWDPHDVN-A  183 (346)
Q Consensus       117 ~~~~~~i~~~~~~~~~~~~~~~~-~~d~~i~vwd~~~~~~~-------~~----~~~~~~~~~~~~v~~~~~~~~~~~-l  183 (346)
                      ..|.+.++.+.-++-++..++++ ++.|.|+||++...-..       ..    -......+|...-+++.|+|-..- +
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L  227 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL  227 (440)
T ss_pred             cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence            46788888888888876656666 78899999998632100       00    001123466677899999994333 6


Q ss_pred             EEEecCCeEEEEEccCCCcc---ceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccC-CcceeeecCCCcceE
Q 019059          184 VAATCESSVQFWDLRSMGKT---NSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRML-KAPIQELPGHTHWTW  256 (346)
Q Consensus       184 ~~~~~d~~i~i~d~~~~~~~---~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~v~  256 (346)
                      ++|..-+.|++|...++.-.   ..+. +|   |..+.|+|....+|++++-||+|+|||+|.. +++....+.|.+.|+
T Consensus       228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~-gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVN  306 (440)
T KOG0302|consen  228 LSGDCVKGIHLWEPSTGSWKVDQRPFT-GHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVN  306 (440)
T ss_pred             ccCccccceEeeeeccCceeecCcccc-ccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCcee
Confidence            77767788999999887532   1222 35   9999999998889999999999999999974 223444578999999


Q ss_pred             EEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecC
Q 019059          257 AVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYD  336 (346)
Q Consensus       257 ~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  336 (346)
                      .|.|+..- .+||+|+.||+++|||++..                ..++++..++-|..+|++|.|+|.....|+++|.|
T Consensus       307 VISWnr~~-~lLasG~DdGt~~iwDLR~~----------------~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D  369 (440)
T KOG0302|consen  307 VISWNRRE-PLLASGGDDGTLSIWDLRQF----------------KSGQPVATFKYHKAPITSIEWHPHEDSVIAASGED  369 (440)
T ss_pred             eEEccCCc-ceeeecCCCceEEEEEhhhc----------------cCCCcceeEEeccCCeeEEEeccccCceEEeccCC
Confidence            99999998 69999999999999999972                12578889999999999999999887799999999


Q ss_pred             CeEEEeeec
Q 019059          337 GRVRNHMLE  345 (346)
Q Consensus       337 ~~v~vw~~~  345 (346)
                      .+|.+|||.
T Consensus       370 ~QitiWDls  378 (440)
T KOG0302|consen  370 NQITIWDLS  378 (440)
T ss_pred             CcEEEEEee
Confidence            999999984

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=3.1e-27  Score=200.74  Aligned_cols=233  Identities=18%  Similarity=0.310  Sum_probs=199.0

Q ss_pred             eeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEE
Q 019059           60 GLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS  139 (346)
Q Consensus        60 ~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  139 (346)
                      .+..|...|.++..-...+.++.    ||.|..+.+|.+.         ....+..+.+|..+|.++.|+++.. ++.++
T Consensus        23 ~~~~hsaav~~lk~~~s~r~~~~----Gg~~~k~~L~~i~---------kp~~i~S~~~hespIeSl~f~~~E~-Llaag   88 (825)
T KOG0267|consen   23 EFVAHSAAVGCLKIRKSSRSLVT----GGEDEKVNLWAIG---------KPNAITSLTGHESPIESLTFDTSER-LLAAG   88 (825)
T ss_pred             hhhhhhhhhceeeeeccceeecc----CCCceeecccccc---------CCchhheeeccCCcceeeecCcchh-hhccc
Confidence            34568888999888555555555    6899999999988         4455667899999999999999887 57777


Q ss_pred             ecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEe
Q 019059          140 IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDY  216 (346)
Q Consensus       140 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~  216 (346)
                      +.+|.|++||++..+...     ...+|...+..+.|+|-+.+.+.++.|+.+.+||.+...+...+. +|   +..+.|
T Consensus        89 sasgtiK~wDleeAk~vr-----tLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~-s~~~vv~~l~l  162 (825)
T KOG0267|consen   89 SASGTIKVWDLEEAKIVR-----TLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYK-SHTRVVDVLRL  162 (825)
T ss_pred             ccCCceeeeehhhhhhhh-----hhhccccCcceeeeccceEEeccccccccceehhhhccCceeeec-CCcceeEEEee
Confidence            889999999999655333     334677789999999999999999999999999999888888887 46   999999


Q ss_pred             CCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCccccc
Q 019059          217 DTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLV  296 (346)
Q Consensus       217 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  296 (346)
                      +|+|. +++.+++|..+++||+.. +.....|..|+..+..+.|+|.. .++++|+.|+++++||+++            
T Consensus       163 sP~Gr-~v~~g~ed~tvki~d~~a-gk~~~ef~~~e~~v~sle~hp~e-~Lla~Gs~d~tv~f~dlet------------  227 (825)
T KOG0267|consen  163 SPDGR-WVASGGEDNTVKIWDLTA-GKLSKEFKSHEGKVQSLEFHPLE-VLLAPGSSDRTVRFWDLET------------  227 (825)
T ss_pred             cCCCc-eeeccCCcceeeeecccc-cccccccccccccccccccCchh-hhhccCCCCceeeeeccce------------
Confidence            99998 899999999999999987 66888999999999999999998 9999999999999999998            


Q ss_pred             CCccccccccccccccccceeeEEEeCCCCCcEEEEeec
Q 019059          297 ESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSY  335 (346)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  335 (346)
                             .+.+.........|.+.+|+|++. .+.+|..
T Consensus       228 -------fe~I~s~~~~~~~v~~~~fn~~~~-~~~~G~q  258 (825)
T KOG0267|consen  228 -------FEVISSGKPETDGVRSLAFNPDGK-IVLSGEQ  258 (825)
T ss_pred             -------eEEeeccCCccCCceeeeecCCce-eeecCch
Confidence                   677777777777899999999996 6666544

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.94  E-value=2.9e-24  Score=185.53  Aligned_cols=293  Identities=17%  Similarity=0.280  Sum_probs=226.9

Q ss_pred             ceeeecccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccc-cceEEeeecCCCCceEEEE
Q 019059            6 SGIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHP-NEIWDLSSCPFDQRIFSTV   84 (346)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~~~~   84 (346)
                      +..+|..+..-..|+++...|--..+++|.    .+|+|.++++..++-.   .. +.|. ++|+.++|.-||..++++ 
T Consensus       192 ~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~----~~G~ViifNlK~dkil---~s-Fk~d~g~VtslSFrtDG~p~las-  262 (910)
T KOG1539|consen  192 GKVVYTFQEFFSRITAIEQSPALDVVAIGL----ENGTVIIFNLKFDKIL---MS-FKQDWGRVTSLSFRTDGNPLLAS-  262 (910)
T ss_pred             CcEEEEecccccceeEeccCCcceEEEEec----cCceEEEEEcccCcEE---EE-EEccccceeEEEeccCCCeeEEe-
Confidence            466777776666788888888888888885    6789999998876422   22 3354 999999999999999887 


Q ss_pred             eecCCcceEEEEecCcccCCCCCccceeeeee-eccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCc------
Q 019059           85 FSTGESYGAAIWQIPELYGQLNSPQLERIAAL-DAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNA------  157 (346)
Q Consensus        85 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~------  157 (346)
                        ++..|.+.+||++         ..+....+ ..|.+.|....|.|... ++++++.|+.+++|=.+++.-..      
T Consensus       263 --~~~~G~m~~wDLe---------~kkl~~v~~nah~~sv~~~~fl~~ep-Vl~ta~~DnSlk~~vfD~~dg~pR~LR~R  330 (910)
T KOG1539|consen  263 --GRSNGDMAFWDLE---------KKKLINVTRNAHYGSVTGATFLPGEP-VLVTAGADNSLKVWVFDSGDGVPRLLRSR  330 (910)
T ss_pred             --ccCCceEEEEEcC---------CCeeeeeeeccccCCcccceecCCCc-eEeeccCCCceeEEEeeCCCCcchheeec
Confidence              4777999999998         33333333 47878888888888766 45555777777777544210000      


Q ss_pred             --------------------------------------------e-----------------------------------
Q 019059          158 --------------------------------------------Q-----------------------------------  158 (346)
Q Consensus       158 --------------------------------------------~-----------------------------------  158 (346)
                                                                  .                                   
T Consensus       331 ~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~  410 (910)
T KOG1539|consen  331 GGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKE  410 (910)
T ss_pred             cCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhh
Confidence                                                        0                                   


Q ss_pred             ----------------------------e------------------------------------------ee---cccC
Q 019059          159 ----------------------------V------------------------------------------QS---KQSS  165 (346)
Q Consensus       159 ----------------------------~------------------------------------------~~---~~~~  165 (346)
                                                  +                                          ..   ...+
T Consensus       411 W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~  490 (910)
T KOG1539|consen  411 WDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSP  490 (910)
T ss_pred             hcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCc
Confidence                                        0                                          00   0013


Q ss_pred             CCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcc
Q 019059          166 GMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAP  244 (346)
Q Consensus       166 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  244 (346)
                      .|..+|++++...-++.+++++.+|.+.+||.........+..++ +.++..+.... +++.+.+|-.|+++|..+ .+.
T Consensus       491 ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~-l~a~~~ddf~I~vvD~~t-~kv  568 (910)
T KOG1539|consen  491 AHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSD-LLAIALDDFSIRVVDVVT-RKV  568 (910)
T ss_pred             cccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhh-hhhhhcCceeEEEEEchh-hhh
Confidence            456677777776666778888888889999998888777777677 88999998887 899999999999999997 668


Q ss_pred             eeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCC
Q 019059          245 IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS  324 (346)
Q Consensus       245 ~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  324 (346)
                      ++.|.+|.+.|+.++|||+| ++|++++.|++|++||+.+                   +.++-.+. -..+.+++.|+|
T Consensus       569 vR~f~gh~nritd~~FS~Dg-rWlisasmD~tIr~wDlpt-------------------~~lID~~~-vd~~~~sls~SP  627 (910)
T KOG1539|consen  569 VREFWGHGNRITDMTFSPDG-RWLISASMDSTIRTWDLPT-------------------GTLIDGLL-VDSPCTSLSFSP  627 (910)
T ss_pred             hHHhhccccceeeeEeCCCC-cEEEEeecCCcEEEEeccC-------------------cceeeeEe-cCCcceeeEECC
Confidence            99999999999999999999 9999999999999999998                   77766553 356789999999


Q ss_pred             CCCcEEEEeecC-CeEEEee
Q 019059          325 REPWIFASLSYD-GRVRNHM  343 (346)
Q Consensus       325 ~~~~~l~s~~~d-~~v~vw~  343 (346)
                      +|. +||+...| .-|++|.
T Consensus       628 ngD-~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  628 NGD-FLATVHVDQNGIYLWS  646 (910)
T ss_pred             CCC-EEEEEEecCceEEEEE
Confidence            998 89999888 6699995

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=3.6e-27  Score=200.35  Aligned_cols=213  Identities=21%  Similarity=0.398  Sum_probs=186.1

Q ss_pred             CCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCC
Q 019059           88 GESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGM  167 (346)
Q Consensus        88 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~  167 (346)
                      ..+..+++|+..               .+..|...+.++..-..++ .++.+++|..+-+|.+........     ..+|
T Consensus        11 ~~~t~Lr~~~~~---------------~~~~hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~S-----~~~h   69 (825)
T KOG0267|consen   11 KRATKLRVWDTR---------------EFVAHSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAITS-----LTGH   69 (825)
T ss_pred             eeeeccccccch---------------hhhhhhhhhceeeeeccce-eeccCCCceeeccccccCCchhhe-----eecc
Confidence            355577788865               2346888888888755555 477778888999999876544333     3568


Q ss_pred             ceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcc
Q 019059          168 LHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAP  244 (346)
Q Consensus       168 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  244 (346)
                      ..+|.++.|++....|++|+.+|+|++||+...+.++++. +|   +.++.|+|.+. +++.|+.|+.+++||++. ..+
T Consensus        70 espIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLt-gh~~~~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk-~Gc  146 (825)
T KOG0267|consen   70 ESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLT-GHLLNITSVDFHPYGE-FFASGSTDTDLKIWDIRK-KGC  146 (825)
T ss_pred             CCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhh-ccccCcceeeeccceE-Eeccccccccceehhhhc-cCc
Confidence            8899999999999999999999999999999999999887 66   99999999998 789999999999999997 448


Q ss_pred             eeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCC
Q 019059          245 IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS  324 (346)
Q Consensus       245 ~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  324 (346)
                      .+.+.+|...+..++|+|+| ++++++++|.+++|||...                   ++.+..|..|...+.++.|+|
T Consensus       147 ~~~~~s~~~vv~~l~lsP~G-r~v~~g~ed~tvki~d~~a-------------------gk~~~ef~~~e~~v~sle~hp  206 (825)
T KOG0267|consen  147 SHTYKSHTRVVDVLRLSPDG-RWVASGGEDNTVKIWDLTA-------------------GKLSKEFKSHEGKVQSLEFHP  206 (825)
T ss_pred             eeeecCCcceeEEEeecCCC-ceeeccCCcceeeeecccc-------------------cccccccccccccccccccCc
Confidence            99999999999999999999 9999999999999999998                   999999999999999999999


Q ss_pred             CCCcEEEEeecCCeEEEeeec
Q 019059          325 REPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       325 ~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      ..- ++++||.|++|++||++
T Consensus       207 ~e~-Lla~Gs~d~tv~f~dle  226 (825)
T KOG0267|consen  207 LEV-LLAPGSSDRTVRFWDLE  226 (825)
T ss_pred             hhh-hhccCCCCceeeeeccc
Confidence            884 99999999999999997

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.94  E-value=8.9e-26  Score=184.68  Aligned_cols=245  Identities=14%  Similarity=0.215  Sum_probs=199.2

Q ss_pred             eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeec--cCCceEEEEeecCCCCcE
Q 019059           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA--HVGKINCVLWWSSGRHDK  136 (346)
Q Consensus        59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~  136 (346)
                      .....|..-|.++..|...+++.++     ..|-|+|||+....      ...++..+..  ...-|.++...|||+. +
T Consensus       413 ~~tL~HGEvVcAvtIS~~trhVyTg-----GkgcVKVWdis~pg------~k~PvsqLdcl~rdnyiRSckL~pdgrt-L  480 (705)
T KOG0639|consen  413 INTLAHGEVVCAVTISNPTRHVYTG-----GKGCVKVWDISQPG------NKSPVSQLDCLNRDNYIRSCKLLPDGRT-L  480 (705)
T ss_pred             hhhhccCcEEEEEEecCCcceeEec-----CCCeEEEeeccCCC------CCCccccccccCcccceeeeEecCCCce-E
Confidence            3456788999999999988888873     56789999998432      2233333332  3567899999999996 8


Q ss_pred             EEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeE
Q 019059          137 LVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRN  213 (346)
Q Consensus       137 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~  213 (346)
                      +++++-.++.|||+.......+.....   .--.++.++.+||.+..++++.||.|.|||+.+...++.++ +|   +.|
T Consensus       481 ivGGeastlsiWDLAapTprikaelts---sapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq-GhtDGasc  556 (705)
T KOG0639|consen  481 IVGGEASTLSIWDLAAPTPRIKAELTS---SAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ-GHTDGASC  556 (705)
T ss_pred             EeccccceeeeeeccCCCcchhhhcCC---cchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeeccc-CCCCCcee
Confidence            888888999999998765443333222   11267889999999999999999999999999999999998 77   999


Q ss_pred             EEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcc
Q 019059          214 VDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSE  293 (346)
Q Consensus       214 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  293 (346)
                      |..+++|. .|-+|+-|.+||.||+|... .+.... ....|.++..+|++ .+|+.|-+++.+.|.....         
T Consensus       557 Idis~dGt-klWTGGlDntvRcWDlregr-qlqqhd-F~SQIfSLg~cP~~-dWlavGMens~vevlh~sk---------  623 (705)
T KOG0639|consen  557 IDISKDGT-KLWTGGLDNTVRCWDLREGR-QLQQHD-FSSQIFSLGYCPTG-DWLAVGMENSNVEVLHTSK---------  623 (705)
T ss_pred             EEecCCCc-eeecCCCccceeehhhhhhh-hhhhhh-hhhhheecccCCCc-cceeeecccCcEEEEecCC---------
Confidence            99999998 89999999999999999844 333322 35789999999999 9999999999999888874         


Q ss_pred             cccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059          294 SLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~  344 (346)
                                 .....+..|.+-|.++.|.+.|+ .+++.+.|..+..|..
T Consensus       624 -----------p~kyqlhlheScVLSlKFa~cGk-wfvStGkDnlLnawrt  662 (705)
T KOG0639|consen  624 -----------PEKYQLHLHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRT  662 (705)
T ss_pred             -----------ccceeecccccEEEEEEecccCc-eeeecCchhhhhhccC
Confidence                       56677788999999999999998 7899999999998864

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.94  E-value=2.5e-25  Score=170.56  Aligned_cols=224  Identities=18%  Similarity=0.281  Sum_probs=175.2

Q ss_pred             eccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCC--C--------ceeeecccCCCceeeEEEEeCCCCCcEEEE
Q 019059          117 DAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNK--N--------AQVQSKQSSGMLHYLSGGAWDPHDVNAVAA  186 (346)
Q Consensus       117 ~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~--~--------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  186 (346)
                      +.|.+.|+++...+...+.+++++.||.|.+||++....  .        ..+......+|...|..+.|-|-+.-+++.
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            468899999999887666688888999999999985431  1        111223356788899999999976665555


Q ss_pred             -ecCCeEEEEEccCCCccceeeccc-eeEEEeCCCCC--cEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCC
Q 019059          187 -TCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKK--HLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNP  262 (346)
Q Consensus       187 -~~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~  262 (346)
                       +-|.++++||..+.+....+..+. |.+-+++|-..  -++++|..+-.|++.|+.. +..-+.+.+|...|.+|.|+|
T Consensus       120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S-Gs~sH~LsGHr~~vlaV~Wsp  198 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS-GSFSHTLSGHRDGVLAVEWSP  198 (397)
T ss_pred             ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccC-CcceeeeccccCceEEEEecc
Confidence             569999999999999888888666 88888888542  3788888999999999998 668899999999999999999


Q ss_pred             CCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEe
Q 019059          263 EYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNH  342 (346)
Q Consensus       263 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw  342 (346)
                      ..+..|++|+.||.|++||++...+-........    ....+.+++-..|.+.|.+++|..++. .+++++.|..+++|
T Consensus       199 ~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn----~k~~p~~~~n~ah~gkvngla~tSd~~-~l~~~gtd~r~r~w  273 (397)
T KOG4283|consen  199 SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHN----TKRPPILKTNTAHYGKVNGLAWTSDAR-YLASCGTDDRIRVW  273 (397)
T ss_pred             CceeEEEecCCCceEEEEEeecccceeEEeeccc----CccCccccccccccceeeeeeecccch-hhhhccCccceEEe
Confidence            9988899999999999999997422110000000    011233344567899999999999997 89999999999999


Q ss_pred             eecC
Q 019059          343 MLEK  346 (346)
Q Consensus       343 ~~~~  346 (346)
                      +.++
T Consensus       274 n~~~  277 (397)
T KOG4283|consen  274 NMES  277 (397)
T ss_pred             eccc
Confidence            9764

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.94  E-value=1.2e-24  Score=175.90  Aligned_cols=259  Identities=14%  Similarity=0.188  Sum_probs=193.2

Q ss_pred             eeeeccccceEEeeecCCCC-ceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEE
Q 019059           59 EGLFSHPNEIWDLSSCPFDQ-RIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKL  137 (346)
Q Consensus        59 ~~~~~h~~~v~~~~~~~~~~-~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  137 (346)
                      ....-+.+.|++++|+|... .++++   |+..|.|-+||+...     .+...-+..+..|..+|.++.|+|.+...++
T Consensus       180 ~v~kv~~~Rit~l~fHPt~~~~lva~---GdK~G~VG~Wn~~~~-----~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~  251 (498)
T KOG4328|consen  180 NVAKVTDRRITSLAFHPTENRKLVAV---GDKGGQVGLWNFGTQ-----EKDKDGVYLFTPHSGPVSGLKFSPANTSQIY  251 (498)
T ss_pred             ceeEecccceEEEEecccCcceEEEE---ccCCCcEEEEecCCC-----CCccCceEEeccCCccccceEecCCChhhee
Confidence            33445789999999999877 67776   688899999999521     1133455567789999999999999888799


Q ss_pred             EEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEE
Q 019059          138 VSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNV  214 (346)
Q Consensus       138 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~  214 (346)
                      +++.||+|++-|+++......+...   .....+.++.|+.+...++++..=|...+||++++........-|   |+++
T Consensus       252 ssSyDGtiR~~D~~~~i~e~v~s~~---~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv  328 (498)
T KOG4328|consen  252 SSSYDGTIRLQDFEGNISEEVLSLD---TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSV  328 (498)
T ss_pred             eeccCceeeeeeecchhhHHHhhcC---ccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhccccee
Confidence            9999999999999865422222111   123367888999988889988877799999999877533222233   9999


Q ss_pred             EeCCCCCcEEEEecCCCeEEEEEcccCCc---ceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCC
Q 019059          215 DYDTKKKHLLVTAADESGIHLWDLRMLKA---PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELP  291 (346)
Q Consensus       215 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  291 (346)
                      +++|..++++++++.|++++|||+|+...   |+.....|...|.+..|||.+ -.|++.+.|..|+|||..-....   
T Consensus       329 ~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~-gtl~TT~~D~~IRv~dss~~sa~---  404 (498)
T KOG4328|consen  329 ALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSG-GTLLTTCQDNEIRVFDSSCISAK---  404 (498)
T ss_pred             ecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCC-CceEeeccCCceEEeeccccccc---
Confidence            99999999999999999999999997532   233445699999999999999 55999999999999999521000   


Q ss_pred             cccccCCcccccccccccccc---ccc--eeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          292 SESLVESPNQRANSLLNSYSD---YED--SVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~---~~~--~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                                  .++..++..   +..  .....+|.|+.. +++.|-.-..|-|+|-+
T Consensus       405 ------------~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~-li~vg~~~r~IDv~~~~  450 (498)
T KOG4328|consen  405 ------------DEPLGTIPHNNRTGRWLTPFKAAWDPDYN-LIVVGRYPRPIDVFDGN  450 (498)
T ss_pred             ------------CCccceeeccCcccccccchhheeCCCcc-EEEEeccCcceeEEcCC
Confidence                        233332221   111  234578999886 88888888888888754

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.94  E-value=9.5e-25  Score=184.95  Aligned_cols=240  Identities=16%  Similarity=0.250  Sum_probs=195.7

Q ss_pred             EEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEE-EEeecCCCCc
Q 019059           57 ICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINC-VLWWSSGRHD  135 (346)
Q Consensus        57 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~  135 (346)
                      ....+.+|...|..+++.+.. .+++    ++.|+++++|+-.       .........+.+|.+-|.. ++|.+..+..
T Consensus         6 ls~~l~gH~~DVr~v~~~~~~-~i~s----~sRd~t~~vw~~~-------~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~   73 (745)
T KOG0301|consen    6 LSHELEGHKSDVRAVAVTDGV-CIIS----GSRDGTVKVWAKK-------GKQYLETHAFEGPKGFIANSICYAESDKGR   73 (745)
T ss_pred             eEEEeccCccchheeEecCCe-EEee----cCCCCceeeeecc-------CcccccceecccCcceeeccceeccccCcc
Confidence            346778999999999877643 4555    4789999999964       1234444567778887777 8888755555


Q ss_pred             EEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---ee
Q 019059          136 KLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VR  212 (346)
Q Consensus       136 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~  212 (346)
                      ++.++.|..|.+|...+......     ..+|...|.++....++. +++++.|.++++|-...  +...+. +|   |.
T Consensus        74 l~~g~~D~~i~v~~~~~~~P~~~-----LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~--l~~~l~-gH~asVW  144 (745)
T KOG0301|consen   74 LVVGGMDTTIIVFKLSQAEPLYT-----LKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE--LVYSLQ-GHTASVW  144 (745)
T ss_pred             eEeecccceEEEEecCCCCchhh-----hhccccceeeeecCCcCc-eEecccccceEEecchh--hhcccC-Ccchhee
Confidence            88889999999999986654333     346888999999877666 99999999999997643  444454 67   99


Q ss_pred             EEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCc
Q 019059          213 NVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPS  292 (346)
Q Consensus       213 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  292 (346)
                      +++.-|++  .+++|+.|++|++|.-   +..+++|.+|...|+.+++-+++  .|++++.||.|++|++.         
T Consensus       145 Av~~l~e~--~~vTgsaDKtIklWk~---~~~l~tf~gHtD~VRgL~vl~~~--~flScsNDg~Ir~w~~~---------  208 (745)
T KOG0301|consen  145 AVASLPEN--TYVTGSADKTIKLWKG---GTLLKTFSGHTDCVRGLAVLDDS--HFLSCSNDGSIRLWDLD---------  208 (745)
T ss_pred             eeeecCCC--cEEeccCcceeeeccC---CchhhhhccchhheeeeEEecCC--CeEeecCCceEEEEecc---------
Confidence            99999988  5899999999999985   44789999999999999999874  58999999999999995         


Q ss_pred             ccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          293 ESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                                 ++++.++.+|+.-|.+++..++++ +++++++|++++||+.+
T Consensus       209 -----------ge~l~~~~ghtn~vYsis~~~~~~-~Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  209 -----------GEVLLEMHGHTNFVYSISMALSDG-LIVSTGEDRTLRIWKKD  249 (745)
T ss_pred             -----------CceeeeeeccceEEEEEEecCCCC-eEEEecCCceEEEeecC
Confidence                       699999999999999999776665 89999999999999853

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.94  E-value=2.9e-24  Score=166.71  Aligned_cols=253  Identities=14%  Similarity=0.170  Sum_probs=187.4

Q ss_pred             ceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCC--Ccc-ceeeeeee-ccCCceEEEEee-------cCCCCc
Q 019059           67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLN--SPQ-LERIAALD-AHVGKINCVLWW-------SSGRHD  135 (346)
Q Consensus        67 ~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~--~~~-~~~~~~~~-~~~~~i~~~~~~-------~~~~~~  135 (346)
                      -...+.|+|||..+++.    +.|..+++|+++...-...  .+. .+....++ .....|...+|-       |+.. +
T Consensus        51 f~kgckWSPDGSciL~~----sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~-l  125 (406)
T KOG2919|consen   51 FLKGCKWSPDGSCILSL----SEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTN-L  125 (406)
T ss_pred             hhccceeCCCCceEEee----cccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccc-e
Confidence            44578999999999996    6899999999974322111  111 11111121 234567777775       4444 5


Q ss_pred             EEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEc-cCCCcc---ceeec---
Q 019059          136 KLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDL-RSMGKT---NSIEH---  208 (346)
Q Consensus       136 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~---~~~~~---  208 (346)
                      +++++.+.-|.+||.-+++....+..-.+........+++|+|||..|++|- ...|+++|+ |.|...   .++..   
T Consensus       126 ~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~  204 (406)
T KOG2919|consen  126 FAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKF  204 (406)
T ss_pred             eeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccc
Confidence            7777889999999999887666555444333334568899999999988874 678999999 555422   12222   


Q ss_pred             cc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecC-CCeEEEEecCC
Q 019059          209 AH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGT-DSTVNLWLVST  284 (346)
Q Consensus       209 ~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~-d~~i~iwd~~~  284 (346)
                      +.   +.+++|+|.....+++|+...++-|+.-.. ..|+..+.+|.+.|+.++|.++| +.|++|+. |..|..||++.
T Consensus       205 gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~-~~pl~llggh~gGvThL~~~edG-n~lfsGaRk~dkIl~WDiR~  282 (406)
T KOG2919|consen  205 GQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG-RRPLQLLGGHGGGVTHLQWCEDG-NKLFSGARKDDKILCWDIRY  282 (406)
T ss_pred             cccceeeeeeccCCCCcceeeecccceeeeEecCC-CCceeeecccCCCeeeEEeccCc-CeecccccCCCeEEEEeehh
Confidence            11   999999999887899999888888887665 56899999999999999999999 78888776 67899999997


Q ss_pred             CCCCCCCcccccCCccccccccccccccccc---eeeEEEeCCCCCcEEEEeecCCeEEEeeecC
Q 019059          285 SNHDELPSESLVESPNQRANSLLNSYSDYED---SVYGLAWSSREPWIFASLSYDGRVRNHMLEK  346 (346)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~~  346 (346)
                                        ...++..+..|..   .-.-+...|.++ +|++|+.||.|++||+.+
T Consensus       283 ------------------~~~pv~~L~rhv~~TNQRI~FDld~~~~-~LasG~tdG~V~vwdlk~  328 (406)
T KOG2919|consen  283 ------------------SRDPVYALERHVGDTNQRILFDLDPKGE-ILASGDTDGSVRVWDLKD  328 (406)
T ss_pred             ------------------ccchhhhhhhhccCccceEEEecCCCCc-eeeccCCCccEEEEecCC
Confidence                              4677777777755   222356678887 999999999999999864

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=2.5e-24  Score=160.76  Aligned_cols=245  Identities=17%  Similarity=0.279  Sum_probs=188.0

Q ss_pred             cCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeec-CCCCceEEEEeecCCcceEEEEecCcc
Q 019059           23 KADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSC-PFDQRIFSTVFSTGESYGAAIWQIPEL  101 (346)
Q Consensus        23 ~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~~~~~~~~~d~~i~vw~~~~~  101 (346)
                      ..+=.+.|++..    +.++.|.++.+.+.+.......+.+|.++|+.++|. |.-..+++.   ++.|+.|.||.-+  
T Consensus        18 ~lDyygkrlATc----sSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAS---csYDgkVIiWke~--   88 (299)
T KOG1332|consen   18 QLDYYGKRLATC----SSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILAS---CSYDGKVIIWKEE--   88 (299)
T ss_pred             hhhhhcceeeee----cCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeE---eecCceEEEEecC--
Confidence            344456777764    478999999999887756678999999999999995 544444444   3799999999976  


Q ss_pred             cCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEE-ecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCC-
Q 019059          102 YGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS-IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPH-  179 (346)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-  179 (346)
                           ++..........|...|++++|.|.+-.+++++ +.||.|.|.+.+.....  ........|.-.|++++|.|. 
T Consensus        89 -----~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w--~t~ki~~aH~~GvnsVswapa~  161 (299)
T KOG1332|consen   89 -----NGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGW--TTSKIVFAHEIGVNSVSWAPAS  161 (299)
T ss_pred             -----CCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCc--cchhhhhccccccceeeecCcC
Confidence                 345666777889999999999999987777766 77999999999865211  112223457778999999986 


Q ss_pred             --C-----------CcEEEEecCCeEEEEEccCCCccc-eeeccc---eeEEEeCCCCC---cEEEEecCCCeEEEEEcc
Q 019059          180 --D-----------VNAVAATCESSVQFWDLRSMGKTN-SIEHAH---VRNVDYDTKKK---HLLVTAADESGIHLWDLR  239 (346)
Q Consensus       180 --~-----------~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~---v~~~~~~~~~~---~~l~~~~~dg~i~i~d~~  239 (346)
                        |           +.|++++.|..|+||+...++-.. ....+|   |+.++|.|.-.   ..+++++.||++.||-.+
T Consensus       162 ~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~  241 (299)
T KOG1332|consen  162 APGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD  241 (299)
T ss_pred             CCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEec
Confidence              3           459999999999999999875322 112366   99999999752   369999999999999877


Q ss_pred             cCCc--ceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          240 MLKA--PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       240 ~~~~--~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      ....  ....++.....+..+.||+.| +.|+.++.|+.|.+|.-+.
T Consensus       242 ~e~e~wk~tll~~f~~~~w~vSWS~sG-n~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  242 EEYEPWKKTLLEEFPDVVWRVSWSLSG-NILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             CccCcccccccccCCcceEEEEEeccc-cEEEEecCCcEEEEEEeCC
Confidence            4322  223344456789999999999 9999999999999997664

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=5.9e-24  Score=185.55  Aligned_cols=240  Identities=16%  Similarity=0.261  Sum_probs=193.3

Q ss_pred             eccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEec
Q 019059           62 FSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSID  141 (346)
Q Consensus        62 ~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  141 (346)
                      +.|...-+.++|.|+|.+|+++    |.|+.|++|+...        ..+...++..+...|.+++-...  + +++++.
T Consensus        10 yaht~G~t~i~~d~~gefi~tc----gsdg~ir~~~~~s--------d~e~P~ti~~~g~~v~~ia~~s~--~-f~~~s~   74 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTC----GSDGDIRKWKTNS--------DEEEPETIDISGELVSSIACYSN--H-FLTGSE   74 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEe----cCCCceEEeecCC--------cccCCchhhccCceeEEEeeccc--c-eEEeec
Confidence            4788899999999999977775    8999999999762        11223344347777888776543  3 888889


Q ss_pred             CCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCC
Q 019059          142 EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDT  218 (346)
Q Consensus       142 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~  218 (346)
                      ++.|.+|.+..++....+...     .-++..++++.+|.++++|+.|-.|++.++........+. +|   |.++.|+|
T Consensus        75 ~~tv~~y~fps~~~~~iL~Rf-----tlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr-gh~apVl~l~~~p  148 (933)
T KOG1274|consen   75 QNTVLRYKFPSGEEDTILARF-----TLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR-GHDAPVLQLSYDP  148 (933)
T ss_pred             cceEEEeeCCCCCccceeeee-----eccceEEEEecCCcEEEeecCceeEEEEeccccchheeec-ccCCceeeeeEcC
Confidence            999999999877654333332     2388999999999999999999999999999888877776 55   99999999


Q ss_pred             CCCcEEEEecCCCeEEEEEcccCCcceeeecC--------CCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCC
Q 019059          219 KKKHLLVTAADESGIHLWDLRMLKAPIQELPG--------HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDEL  290 (346)
Q Consensus       219 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--------~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  290 (346)
                      ++. +|++.+-||.|++||+.. +....++.+        ....+..++|+|++ ..|+..+.|+.|++|+...      
T Consensus       149 ~~~-fLAvss~dG~v~iw~~~~-~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~-g~la~~~~d~~Vkvy~r~~------  219 (933)
T KOG1274|consen  149 KGN-FLAVSSCDGKVQIWDLQD-GILSKTLTGVDKDNEFILSRICTRLAWHPKG-GTLAVPPVDNTVKVYSRKG------  219 (933)
T ss_pred             CCC-EEEEEecCceEEEEEccc-chhhhhcccCCccccccccceeeeeeecCCC-CeEEeeccCCeEEEEccCC------
Confidence            998 999999999999999986 434444332        13456789999998 7778888899999999998      


Q ss_pred             CcccccCCcccccccccccccc--ccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          291 PSESLVESPNQRANSLLNSYSD--YEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                                   ++..+.+..  +...+.++.|+|.|. +||+++.||.|.|||++
T Consensus       220 -------------we~~f~Lr~~~~ss~~~~~~wsPnG~-YiAAs~~~g~I~vWnv~  262 (933)
T KOG1274|consen  220 -------------WELQFKLRDKLSSSKFSDLQWSPNGK-YIAASTLDGQILVWNVD  262 (933)
T ss_pred             -------------ceeheeecccccccceEEEEEcCCCc-EEeeeccCCcEEEEecc
Confidence                         777776654  444599999999997 99999999999999987

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.93  E-value=2.2e-24  Score=179.94  Aligned_cols=258  Identities=16%  Similarity=0.175  Sum_probs=188.0

Q ss_pred             eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEE
Q 019059           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV  138 (346)
Q Consensus        59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  138 (346)
                      ..+.+|.+.|.+|...|.|..|++    |+.||+|+||.+.         ++.+++++ ...+.|.|++|+|.+..-+++
T Consensus       394 lvyrGHtg~Vr~iSvdp~G~wlas----GsdDGtvriWEi~---------TgRcvr~~-~~d~~I~~vaw~P~~~~~vLA  459 (733)
T KOG0650|consen  394 LVYRGHTGLVRSISVDPSGEWLAS----GSDDGTVRIWEIA---------TGRCVRTV-QFDSEIRSVAWNPLSDLCVLA  459 (733)
T ss_pred             eeEeccCCeEEEEEecCCcceeee----cCCCCcEEEEEee---------cceEEEEE-eecceeEEEEecCCCCceeEE
Confidence            557799999999999999988888    5899999999999         88998888 456799999999998866666


Q ss_pred             EecCCeEEEEEcCCCCCCce---------e-----------ee------------cccCCCceeeEEEEeCCCCCcEEEE
Q 019059          139 SIDEENIFLWSLDCSNKNAQ---------V-----------QS------------KQSSGMLHYLSGGAWDPHDVNAVAA  186 (346)
Q Consensus       139 ~~~d~~i~vwd~~~~~~~~~---------~-----------~~------------~~~~~~~~~v~~~~~~~~~~~l~~~  186 (346)
                      .+....+.+.+..-+.....         .           ..            ...-.|...|..+.|+..|.+|++.
T Consensus       460 vA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV  539 (733)
T KOG0650|consen  460 VAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATV  539 (733)
T ss_pred             EEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEe
Confidence            65555565555332210000         0           00            0001234466777777777777766


Q ss_pred             ecC---Ce-----------------------------------------EEEEEccCCCccceeeccc--eeEEEeCCCC
Q 019059          187 TCE---SS-----------------------------------------VQFWDLRSMGKTNSIEHAH--VRNVDYDTKK  220 (346)
Q Consensus       187 ~~d---~~-----------------------------------------i~i~d~~~~~~~~~~~~~~--v~~~~~~~~~  220 (346)
                      ..+   ..                                         |++||+.....++.+..+.  |..++.+|.|
T Consensus       540 ~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~G  619 (733)
T KOG0650|consen  540 MPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNG  619 (733)
T ss_pred             ccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCC
Confidence            542   23                                         4455554444444443333  8899999999


Q ss_pred             CcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcc
Q 019059          221 KHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPN  300 (346)
Q Consensus       221 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  300 (346)
                      . -|+.|+.|+.+..||+.-..++.+++..|...+++|+|++.- .+|++|+.||++.|+.-.-.+.-.          +
T Consensus       620 D-nli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ry-PLfas~sdDgtv~Vfhg~VY~Dl~----------q  687 (733)
T KOG0650|consen  620 D-NLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRY-PLFASGSDDGTVIVFHGMVYNDLL----------Q  687 (733)
T ss_pred             C-eEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcccc-ceeeeecCCCcEEEEeeeeehhhh----------c
Confidence            8 677889999999999998778999999999999999999999 999999999999998543210000          0


Q ss_pred             ccccccccccccccce----eeEEEeCCCCCcEEEEeecCCeEEEee
Q 019059          301 QRANSLLNSYSDYEDS----VYGLAWSSREPWIFASLSYDGRVRNHM  343 (346)
Q Consensus       301 ~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~l~s~~~d~~v~vw~  343 (346)
                      .+.--++..+.+|...    |.+..|+|..+ .|++++.||+|++|.
T Consensus       688 npliVPlK~L~gH~~~~~~gVLd~~wHP~qp-WLfsAGAd~tirlfT  733 (733)
T KOG0650|consen  688 NPLIVPLKRLRGHEKTNDLGVLDTIWHPRQP-WLFSAGADGTIRLFT  733 (733)
T ss_pred             CCceEeeeeccCceeecccceEeecccCCCc-eEEecCCCceEEeeC
Confidence            0113456778888765    88999999998 677888899999983

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.3e-23  Score=170.49  Aligned_cols=278  Identities=15%  Similarity=0.205  Sum_probs=198.1

Q ss_pred             CCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeec
Q 019059           39 KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA  118 (346)
Q Consensus        39 ~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~  118 (346)
                      .+...+.+|++......+..+.-.  ...-.++..- .+.+++++.   -.-..+.+|.+..         .........
T Consensus        15 ~d~~~~~~~dl~TGt~~~~ykg~~--~a~~~sl~~l-~~~yllsaq---~~rp~l~vw~i~k---------~~~~~q~~v   79 (476)
T KOG0646|consen   15 FDPINCIVWDLRTGTSLLQYKGSY--LAQAASLTAL-NNEYLLSAQ---LKRPLLHVWEILK---------KDQVVQYIV   79 (476)
T ss_pred             CCCcceeEEecCCCceeEEecCcc--cccchhhhhh-chhheeeec---ccCccccccccCc---------hhhhhhhcc
Confidence            344557788887765544433221  1111112211 236777763   4455899999872         222222334


Q ss_pred             cCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEcc
Q 019059          119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLR  198 (346)
Q Consensus       119 ~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~  198 (346)
                      -.++|.++.-+|+|.+ +++++..+.|++|.+.++......     .+|=..|+++.|+-|+.++++++.||.|.+|++.
T Consensus        80 ~Pg~v~al~s~n~G~~-l~ag~i~g~lYlWelssG~LL~v~-----~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~  153 (476)
T KOG0646|consen   80 LPGPVHALASSNLGYF-LLAGTISGNLYLWELSSGILLNVL-----SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLT  153 (476)
T ss_pred             cccceeeeecCCCceE-EEeecccCcEEEEEeccccHHHHH-----HhhccceeEEEEeCCCcEEEecCCCccEEEEEEE
Confidence            5678999999999984 555558999999999988755444     2355689999999999999999999999999874


Q ss_pred             C---------CCccceeeccc---eeEEEeCCCCC-cEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCC
Q 019059          199 S---------MGKTNSIEHAH---VRNVDYDTKKK-HLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYD  265 (346)
Q Consensus       199 ~---------~~~~~~~~~~~---v~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~  265 (346)
                      .         .++...+. .|   |+++...+.+. ..+++++.|.++++||+.. ...+.++. ....+.+++.+|-. 
T Consensus       154 ~lv~a~~~~~~~p~~~f~-~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~-g~LLlti~-fp~si~av~lDpae-  229 (476)
T KOG0646|consen  154 DLVSADNDHSVKPLHIFS-DHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL-GVLLLTIT-FPSSIKAVALDPAE-  229 (476)
T ss_pred             eecccccCCCccceeeec-cCcceeEEEEecCCCccceEEEecCCceEEEEEecc-ceeeEEEe-cCCcceeEEEcccc-
Confidence            2         22334443 56   88888876532 2799999999999999987 54555554 57889999999999 


Q ss_pred             cEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccc--eeeEEEeCCCCCcEEEEeecCCeEEEee
Q 019059          266 GFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYED--SVYGLAWSSREPWIFASLSYDGRVRNHM  343 (346)
Q Consensus       266 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~d~~v~vw~  343 (346)
                      +.++.|+.+|.|.+.++.....+.........   ...+..+..+.+|..  .|+|++.+-||. +|++|+.||.|+|||
T Consensus       230 ~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~---~~~~t~~~~~~Gh~~~~~ITcLais~Dgt-lLlSGd~dg~VcvWd  305 (476)
T KOG0646|consen  230 RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGR---HEENTQINVLVGHENESAITCLAISTDGT-LLLSGDEDGKVCVWD  305 (476)
T ss_pred             cEEEecCCcceEEeeehhcCCccccccccccc---ccccceeeeeccccCCcceeEEEEecCcc-EEEeeCCCCCEEEEe
Confidence            99999999999999988874432211100000   012455667788887  999999999997 999999999999999


Q ss_pred             ec
Q 019059          344 LE  345 (346)
Q Consensus       344 ~~  345 (346)
                      +.
T Consensus       306 i~  307 (476)
T KOG0646|consen  306 IY  307 (476)
T ss_pred             cc
Confidence            85

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=5.1e-23  Score=174.13  Aligned_cols=282  Identities=14%  Similarity=0.184  Sum_probs=221.1

Q ss_pred             eeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccc-cceEEeeecCCCCceEEEEeecCCcceEE
Q 019059           16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHP-NEIWDLSSCPFDQRIFSTVFSTGESYGAA   94 (346)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~~~~~~~~~d~~i~   94 (346)
                      .+.|.++..+....+++++.    .++.|-+|++..  .......+.+++ ..|.+++|++ +.+|++.    +-+|.|.
T Consensus        25 Ps~I~slA~s~kS~~lAvsR----t~g~IEiwN~~~--~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~----g~sg~i~   93 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSR----TDGNIEIWNLSN--NWFLEPVIHGPEDRSIESLAWAE-GGRLFSS----GLSGSIT   93 (691)
T ss_pred             ccceEEEEEeccCCceeeec----cCCcEEEEccCC--CceeeEEEecCCCCceeeEEEcc-CCeEEee----cCCceEE
Confidence            34566677777777787774    568899998877  455566777766 6899999995 6678885    6899999


Q ss_pred             EEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEE
Q 019059           95 IWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGG  174 (346)
Q Consensus        95 vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~  174 (346)
                      -||+-         +++++..+....+.|++++.+|.++. ++.+++||.+..++...+.......   .......+.++
T Consensus        94 EwDl~---------~lk~~~~~d~~gg~IWsiai~p~~~~-l~IgcddGvl~~~s~~p~~I~~~r~---l~rq~sRvLsl  160 (691)
T KOG2048|consen   94 EWDLH---------TLKQKYNIDSNGGAIWSIAINPENTI-LAIGCDDGVLYDFSIGPDKITYKRS---LMRQKSRVLSL  160 (691)
T ss_pred             EEecc---------cCceeEEecCCCcceeEEEeCCccce-EEeecCCceEEEEecCCceEEEEee---cccccceEEEE
Confidence            99998         78888889888999999999999984 7778899977777776543222222   22234589999


Q ss_pred             EeCCCCCcEEEEecCCeEEEEEccCCCccceee-------c-cc--eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcc
Q 019059          175 AWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE-------H-AH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAP  244 (346)
Q Consensus       175 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-------~-~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  244 (346)
                      +|+|++..++.|+.||.|++||...+..+....       . ..  |.++.|-.++  .+++|..-|+|.+||... ...
T Consensus       161 sw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~-gTL  237 (691)
T KOG2048|consen  161 SWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIF-GTL  237 (691)
T ss_pred             EecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccC-cch
Confidence            999999999999999999999999988665221       1 11  8888888776  699999999999999987 668


Q ss_pred             eeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCC
Q 019059          245 IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS  324 (346)
Q Consensus       245 ~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  324 (346)
                      ++.+..|...|.+++..+++ ..+++++.|+.|--|...+...               ..........|...|.+++..+
T Consensus       238 iqS~~~h~adVl~Lav~~~~-d~vfsaGvd~~ii~~~~~~~~~---------------~wv~~~~r~~h~hdvrs~av~~  301 (691)
T KOG2048|consen  238 IQSHSCHDADVLALAVADNE-DRVFSAGVDPKIIQYSLTTNKS---------------EWVINSRRDLHAHDVRSMAVIE  301 (691)
T ss_pred             hhhhhhhhcceeEEEEcCCC-CeEEEccCCCceEEEEecCCcc---------------ceeeeccccCCcccceeeeeec
Confidence            88999999999999999998 8999999999998888776111               0223333456777799999987


Q ss_pred             CCCcEEEEeecCCeEEEee
Q 019059          325 REPWIFASLSYDGRVRNHM  343 (346)
Q Consensus       325 ~~~~~l~s~~~d~~v~vw~  343 (346)
                      +   .+++|+.|..+.+-.
T Consensus       302 ~---~l~sgG~d~~l~i~~  317 (691)
T KOG2048|consen  302 N---ALISGGRDFTLAICS  317 (691)
T ss_pred             c---eEEecceeeEEEEcc
Confidence            5   688999999887643

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.93  E-value=1.2e-22  Score=166.46  Aligned_cols=260  Identities=13%  Similarity=0.139  Sum_probs=195.3

Q ss_pred             CCeEEEEEecCCCCeEEEeeeeccc-cceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeecc
Q 019059           41 ENEVHLLRLSSGGTELICEGLFSHP-NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH  119 (346)
Q Consensus        41 ~~~i~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~  119 (346)
                      .+.++.|......-......+..+. .-|.|++|.+++. +++    |.++|.|.||+..         ..+..+....|
T Consensus       221 k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viT----gDS~G~i~Iw~~~---------~~~~~k~~~aH  286 (626)
T KOG2106|consen  221 KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VIT----GDSGGNILIWSKG---------TNRISKQVHAH  286 (626)
T ss_pred             CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEe----ecCCceEEEEeCC---------CceEEeEeeec
Confidence            3566777554433222222233332 6799999999875 444    4789999999987         55566666699


Q ss_pred             CCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeee------------------------------------cc
Q 019059          120 VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQS------------------------------------KQ  163 (346)
Q Consensus       120 ~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~------------------------------------~~  163 (346)
                      .+.|.+++...+|.  +++++.|..|..||-+ -+....+..                                    ..
T Consensus       287 ~ggv~~L~~lr~Gt--llSGgKDRki~~Wd~~-y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~  363 (626)
T KOG2106|consen  287 DGGVFSLCMLRDGT--LLSGGKDRKIILWDDN-YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLT  363 (626)
T ss_pred             CCceEEEEEecCcc--EeecCccceEEecccc-ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEE
Confidence            99999999999998  7888999999999932 111111000                                    01


Q ss_pred             cCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCC
Q 019059          164 SSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK  242 (346)
Q Consensus       164 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  242 (346)
                      ..+|......++.+|+.+.+++++.|+.+++|+  ..+...+...+. +.|+.|+|.|  .++.|...|...+.|.++ .
T Consensus       364 v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~-~  438 (626)
T KOG2106|consen  364 VQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG--VVAVGTATGRWFVLDTET-Q  438 (626)
T ss_pred             EEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc--eEEEeeccceEEEEeccc-c
Confidence            235666788899999999999999999999999  444444444344 9999999999  689999999999999987 5


Q ss_pred             cceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccc-cccceeeEEE
Q 019059          243 APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYS-DYEDSVYGLA  321 (346)
Q Consensus       243 ~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~  321 (346)
                      ..+..... ..++++++|+|+| .+||.|+.|+.|+||-+..                  .+....... .+.++|+.++
T Consensus       439 ~lv~~~~d-~~~ls~v~ysp~G-~~lAvgs~d~~iyiy~Vs~------------------~g~~y~r~~k~~gs~ithLD  498 (626)
T KOG2106|consen  439 DLVTIHTD-NEQLSVVRYSPDG-AFLAVGSHDNHIYIYRVSA------------------NGRKYSRVGKCSGSPITHLD  498 (626)
T ss_pred             eeEEEEec-CCceEEEEEcCCC-CEEEEecCCCeEEEEEECC------------------CCcEEEEeeeecCceeEEee
Confidence            44544444 8899999999999 9999999999999999886                  233333322 2347899999


Q ss_pred             eCCCCCcEEEEeecCCeEEEee
Q 019059          322 WSSREPWIFASLSYDGRVRNHM  343 (346)
Q Consensus       322 ~~~~~~~~l~s~~~d~~v~vw~  343 (346)
                      |++|++ ++.+.+.|-.|..|.
T Consensus       499 wS~Ds~-~~~~~S~d~eiLyW~  519 (626)
T KOG2106|consen  499 WSSDSQ-FLVSNSGDYEILYWK  519 (626)
T ss_pred             ecCCCc-eEEeccCceEEEEEc
Confidence            999998 899999999999994

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1e-23  Score=163.15  Aligned_cols=279  Identities=14%  Similarity=0.245  Sum_probs=214.3

Q ss_pred             eeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecC
Q 019059           20 SDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIP   99 (346)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~   99 (346)
                      ..+.+++.+.-+++|.    .+|.+.+|++..-+   ..+.+.+|-.+|.+++||++|+.|+++    +.|..+.+||+.
T Consensus        27 ~~~~Fs~~G~~lAvGc----~nG~vvI~D~~T~~---iar~lsaH~~pi~sl~WS~dgr~Llts----S~D~si~lwDl~   95 (405)
T KOG1273|consen   27 ECCQFSRWGDYLAVGC----ANGRVVIYDFDTFR---IARMLSAHVRPITSLCWSRDGRKLLTS----SRDWSIKLWDLL   95 (405)
T ss_pred             ceEEeccCcceeeeec----cCCcEEEEEccccc---hhhhhhccccceeEEEecCCCCEeeee----cCCceeEEEecc
Confidence            3466788888899885    57999999998754   446778999999999999999999996    799999999998


Q ss_pred             cccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCC-ceeeEEEEeCC
Q 019059          100 ELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGM-LHYLSGGAWDP  178 (346)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~  178 (346)
                               .+.+++.+ ...++|..+.|+|.....++++-.+..-.+-++..+  ...+......+. .....+..|.+
T Consensus        96 ---------~gs~l~ri-rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~--~h~~Lp~d~d~dln~sas~~~fdr  163 (405)
T KOG1273|consen   96 ---------KGSPLKRI-RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP--KHSVLPKDDDGDLNSSASHGVFDR  163 (405)
T ss_pred             ---------CCCceeEE-EccCccceeeeccccCCeEEEEEecCCcEEEEecCC--ceeeccCCCccccccccccccccC
Confidence                     66788777 467899999999998887888755555666666542  223333222221 11233446899


Q ss_pred             CCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCc--------ceee
Q 019059          179 HDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA--------PIQE  247 (346)
Q Consensus       179 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--------~~~~  247 (346)
                      .|+++++|...|.+.++|..+.+++..++...   |..+.++..|+ .|+.-+.|..||.|+++....        +.+.
T Consensus       164 ~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~-~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K  242 (405)
T KOG1273|consen  164 RGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGR-FLIINTSDRVIRTYEISDIDDEGRDGEVEPEHK  242 (405)
T ss_pred             CCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCc-EEEEecCCceEEEEehhhhcccCccCCcChhHH
Confidence            99999999999999999999999887776332   99999999998 888999999999999873211        1122


Q ss_pred             ecC--CCcceEEEEeCCCCCcEEEEecC-CCeEEEEecCCCCCCCCCcccccCCcccccccccccccccc-ceeeEEEeC
Q 019059          248 LPG--HTHWTWAVCCNPEYDGFILSAGT-DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYE-DSVYGLAWS  323 (346)
Q Consensus       248 ~~~--~~~~v~~v~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~  323 (346)
                      ++.  ....-.+++|+.+| .|++.++. -..++||....                   +.+++.+.|.. ....++.|+
T Consensus       243 ~qDvVNk~~Wk~ccfs~dg-eYv~a~s~~aHaLYIWE~~~-------------------GsLVKILhG~kgE~l~DV~wh  302 (405)
T KOG1273|consen  243 LQDVVNKLQWKKCCFSGDG-EYVCAGSARAHALYIWEKSI-------------------GSLVKILHGTKGEELLDVNWH  302 (405)
T ss_pred             HHHHHhhhhhhheeecCCc-cEEEeccccceeEEEEecCC-------------------cceeeeecCCchhheeecccc
Confidence            211  12234678899999 77766664 45899999998                   99999998877 567899999


Q ss_pred             CCCCcEEEEeecCCeEEEeee
Q 019059          324 SREPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       324 ~~~~~~l~s~~~d~~v~vw~~  344 (346)
                      |-.+ .+++. ..|.|++|..
T Consensus       303 p~rp-~i~si-~sg~v~iw~~  321 (405)
T KOG1273|consen  303 PVRP-IIASI-ASGVVYIWAV  321 (405)
T ss_pred             ccee-eeeec-cCCceEEEEe
Confidence            9876 67776 6899999975

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.1e-23  Score=170.70  Aligned_cols=248  Identities=10%  Similarity=0.147  Sum_probs=195.2

Q ss_pred             cceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeE
Q 019059           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENI  145 (346)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i  145 (346)
                      +.|+++.|+|..+.++++    |.|+++++|.++       ......++.+.-...+|.+.+|.|+|...+++++.....
T Consensus       214 ~~I~sv~FHp~~plllva----G~d~~lrifqvD-------Gk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~  282 (514)
T KOG2055|consen  214 GGITSVQFHPTAPLLLVA----GLDGTLRIFQVD-------GKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYL  282 (514)
T ss_pred             CCceEEEecCCCceEEEe----cCCCcEEEEEec-------CccChhheeeeeccCccceeeecCCCceEEEecccceEE
Confidence            789999999988888875    899999999998       223345666666688999999999999668888888999


Q ss_pred             EEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEE
Q 019059          146 FLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLL  224 (346)
Q Consensus       146 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l  224 (346)
                      +.||+.+.+.. ++..... -....+.....+|++++|+..+..|.|.+....+++.+..+.... +..+.|+.++. .|
T Consensus       283 ysyDle~ak~~-k~~~~~g-~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk-~l  359 (514)
T KOG2055|consen  283 YSYDLETAKVT-KLKPPYG-VEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSK-EL  359 (514)
T ss_pred             EEeeccccccc-cccCCCC-cccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCc-EE
Confidence            99999876532 2222111 113367778899999999999999999999999999999888655 99999999998 66


Q ss_pred             EEecCCCeEEEEEcccCCcceeeecCCCcce--EEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccc
Q 019059          225 VTAADESGIHLWDLRMLKAPIQELPGHTHWT--WAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQR  302 (346)
Q Consensus       225 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v--~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  302 (346)
                      ++.+.+|.|.+||++. ..+++.+.. .+.|  ++++.++++ .+||+|+..|.|.|||.++-..             ..
T Consensus       360 ~~~~~~GeV~v~nl~~-~~~~~rf~D-~G~v~gts~~~S~ng-~ylA~GS~~GiVNIYd~~s~~~-------------s~  423 (514)
T KOG2055|consen  360 LASGGTGEVYVWNLRQ-NSCLHRFVD-DGSVHGTSLCISLNG-SYLATGSDSGIVNIYDGNSCFA-------------ST  423 (514)
T ss_pred             EEEcCCceEEEEecCC-cceEEEEee-cCccceeeeeecCCC-ceEEeccCcceEEEeccchhhc-------------cC
Confidence            6777789999999998 457777763 3333  567788999 8999999999999999775111             11


Q ss_pred             ccccccccccccceeeEEEeCCCCCcEEEEeec--CCeEEEeee
Q 019059          303 ANSLLNSYSDYEDSVYGLAWSSREPWIFASLSY--DGRVRNHML  344 (346)
Q Consensus       303 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~--d~~v~vw~~  344 (346)
                      ..++++.+..-...|+++.|+|+.+ +||.+|.  +..+|+-.+
T Consensus       424 ~PkPik~~dNLtt~Itsl~Fn~d~q-iLAiaS~~~knalrLVHv  466 (514)
T KOG2055|consen  424 NPKPIKTVDNLTTAITSLQFNHDAQ-ILAIASRVKKNALRLVHV  466 (514)
T ss_pred             CCCchhhhhhhheeeeeeeeCcchh-hhhhhhhccccceEEEec
Confidence            3577788877778899999999998 8777763  556666544

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.93  E-value=6.1e-24  Score=173.77  Aligned_cols=268  Identities=14%  Similarity=0.211  Sum_probs=201.0

Q ss_pred             CCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccC
Q 019059           41 ENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV  120 (346)
Q Consensus        41 ~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~  120 (346)
                      ...+.+|+++.....-........ -.+.++.|+.... |+++.  .+.|..+++|.-...     .++...+....+. 
T Consensus        11 gd~~kl~D~s~~~~~~~~~~~t~~-pg~~s~~w~~~n~-lvvas--~~gdk~~~~~~K~g~-----~~~Vp~~~k~~gd-   80 (673)
T KOG4378|consen   11 GDKTKLSDFSDLETKSEYVHQTAE-PGDFSFNWQRRNF-LVVAS--MAGDKVMRIKEKDGK-----TPEVPRVRKLTGD-   80 (673)
T ss_pred             CCceEEeecccccCccccccCCCC-Ccceeeeccccce-EEEee--cCCceeEEEecccCC-----CCccceeeccccc-
Confidence            346888998876443222211111 3489999987554 44432  577889999986521     1122233333222 


Q ss_pred             CceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCC
Q 019059          121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSM  200 (346)
Q Consensus       121 ~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  200 (346)
                       .-.|++......+ +++++..+.|+|||++..     +.-....+|...|+++.++-.+.+|++++..|.|.|..+.++
T Consensus        81 -~~~Cv~~~s~S~y-~~sgG~~~~Vkiwdl~~k-----l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~  153 (673)
T KOG4378|consen   81 -NAFCVACASQSLY-EISGGQSGCVKIWDLRAK-----LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTK  153 (673)
T ss_pred             -hHHHHhhhhccee-eeccCcCceeeehhhHHH-----HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccC
Confidence             3344444444454 667788999999999832     223334568889999999999999999999999999999999


Q ss_pred             Cccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeE
Q 019059          201 GKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTV  277 (346)
Q Consensus       201 ~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i  277 (346)
                      .....+..+.   ++-+.|+|..+++|.+++.+|.|.+||+........-...|..+...|+|+|..+.+|++.+.|..|
T Consensus       154 ~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki  233 (673)
T KOG4378|consen  154 QKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKI  233 (673)
T ss_pred             ccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceE
Confidence            8888777554   8899999999989999999999999999874444445568999999999999998999999999999


Q ss_pred             EEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeecC
Q 019059          278 NLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLEK  346 (346)
Q Consensus       278 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~~  346 (346)
                      .+||.+.                   ......+. ...+...++|+++|- +|+.|...|.|..||+.+
T Consensus       234 ~~yD~~s-------------------~~s~~~l~-y~~Plstvaf~~~G~-~L~aG~s~G~~i~YD~R~  281 (673)
T KOG4378|consen  234 NIYDIRS-------------------QASTDRLT-YSHPLSTVAFSECGT-YLCAGNSKGELIAYDMRS  281 (673)
T ss_pred             EEeeccc-------------------ccccceee-ecCCcceeeecCCce-EEEeecCCceEEEEeccc
Confidence            9999997                   44444443 355689999999996 999999999999999863

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.2e-22  Score=171.91  Aligned_cols=239  Identities=17%  Similarity=0.214  Sum_probs=190.9

Q ss_pred             cccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeecc-CCceEEEEeecCCCCcEEEEecC
Q 019059           64 HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH-VGKINCVLWWSSGRHDKLVSIDE  142 (346)
Q Consensus        64 h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~d  142 (346)
                      .+.+|.+++|+.+.+.|+++    -.+|.|.+|++..        ..-....+.++ +..|.+++|++.++  +++.+.+
T Consensus        24 ~Ps~I~slA~s~kS~~lAvs----Rt~g~IEiwN~~~--------~w~~~~vi~g~~drsIE~L~W~e~~R--LFS~g~s   89 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQLAVS----RTDGNIEIWNLSN--------NWFLEPVIHGPEDRSIESLAWAEGGR--LFSSGLS   89 (691)
T ss_pred             eccceEEEEEeccCCceeee----ccCCcEEEEccCC--------CceeeEEEecCCCCceeeEEEccCCe--EEeecCC
Confidence            45789999999999998885    5899999999983        34444556555 66899999998777  7888889


Q ss_pred             CeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCcccee--ecc--ceeEEEeCC
Q 019059          143 ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSI--EHA--HVRNVDYDT  218 (346)
Q Consensus       143 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~--~v~~~~~~~  218 (346)
                      |.|.-||+.+.++.......     -..+.+++.+|.+..++.++.||.+..++...++.....  ...  .+.+++|+|
T Consensus        90 g~i~EwDl~~lk~~~~~d~~-----gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~  164 (691)
T KOG2048|consen   90 GSITEWDLHTLKQKYNIDSN-----GGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNP  164 (691)
T ss_pred             ceEEEEecccCceeEEecCC-----CcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecC
Confidence            99999999987654444332     238999999999999999999998877777766543322  222  299999999


Q ss_pred             CCCcEEEEecCCCeEEEEEcccCCcceee-------ecC-CCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCC
Q 019059          219 KKKHLLVTAADESGIHLWDLRMLKAPIQE-------LPG-HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDEL  290 (346)
Q Consensus       219 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~-~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  290 (346)
                      ++. .+++|+.||.|++||..... .+..       +.. -..-|++|.|-.++  .|++|..-|+|.+||...      
T Consensus       165 ~~~-~i~~Gs~Dg~Iriwd~~~~~-t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~------  234 (691)
T KOG2048|consen  165 TGT-KIAGGSIDGVIRIWDVKSGQ-TLHIITMQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIF------  234 (691)
T ss_pred             Ccc-EEEecccCceEEEEEcCCCc-eEEEeeecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccC------
Confidence            997 79999999999999998744 3331       111 22346777777664  799999999999999998      


Q ss_pred             CcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          291 PSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                                   +.+++.+..|.+.|.+++-.+++. .+++++.|+.|..|...
T Consensus       235 -------------gTLiqS~~~h~adVl~Lav~~~~d-~vfsaGvd~~ii~~~~~  275 (691)
T KOG2048|consen  235 -------------GTLIQSHSCHDADVLALAVADNED-RVFSAGVDPKIIQYSLT  275 (691)
T ss_pred             -------------cchhhhhhhhhcceeEEEEcCCCC-eEEEccCCCceEEEEec
Confidence                         899999999999999999999987 88999999999887654

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=6.4e-25  Score=195.87  Aligned_cols=253  Identities=18%  Similarity=0.307  Sum_probs=189.1

Q ss_pred             EeeecCCCCceEEE-Eeec------CCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCC---cEEEE
Q 019059           70 DLSSCPFDQRIFST-VFST------GESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRH---DKLVS  139 (346)
Q Consensus        70 ~~~~~~~~~~l~~~-~~~~------~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~  139 (346)
                      .++|+|.+..++++ ...+      +.+.++.+|.+......   .+.+++..+ ......+.++|.+.+..   +++.|
T Consensus        11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~---~dlk~~~s~-~s~~rF~kL~W~~~g~~~~GlIaGG   86 (1049)
T KOG0307|consen   11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDES---SDLKPVGSL-QSSNRFNKLAWGSYGSHSHGLIAGG   86 (1049)
T ss_pred             eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcc---ccccccccc-cccccceeeeecccCCCccceeecc
Confidence            46899988733332 2111      23556778877632221   112344444 23567889999988876   35556


Q ss_pred             ecCCeEEEEEcCCC-CCCceeeecccCCCceeeEEEEeCCCCC-cEEEEecCCeEEEEEccCCCccceeec---cc-eeE
Q 019059          140 IDEENIFLWSLDCS-NKNAQVQSKQSSGMLHYLSGGAWDPHDV-NAVAATCESSVQFWDLRSMGKTNSIEH---AH-VRN  213 (346)
Q Consensus       140 ~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~-v~~  213 (346)
                      .+||.|.+||...- .............|...|.++.|++... .|++|++||.|.|||+...+.......   .. |.+
T Consensus        87 ~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~  166 (1049)
T KOG0307|consen   87 LEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKC  166 (1049)
T ss_pred             ccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceE
Confidence            88999999998752 1111222233456888999999999877 678888899999999998665444421   12 999


Q ss_pred             EEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCc--ceEEEEeCCCCCcEEEEecCCC---eEEEEecCCCCCC
Q 019059          214 VDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTH--WTWAVCCNPEYDGFILSAGTDS---TVNLWLVSTSNHD  288 (346)
Q Consensus       214 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~v~~v~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~  288 (346)
                      ++|+..-..+|++++.+|.+.|||+|. ++++..+..+..  .+..++|+|+....|++++.|.   .|.+||+|.    
T Consensus       167 lsWNrkvqhILAS~s~sg~~~iWDlr~-~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~----  241 (1049)
T KOG0307|consen  167 LSWNRKVSHILASGSPSGRAVIWDLRK-KKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRF----  241 (1049)
T ss_pred             eccchhhhHHhhccCCCCCceeccccC-CCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccc----
Confidence            999998887999999999999999998 567777766554  4678999999988888888765   799999997    


Q ss_pred             CCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          289 ELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                                    ...+++.+.+|...|.++.|++.+.++|++++.|++|.+|+.+
T Consensus       242 --------------assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~  284 (1049)
T KOG0307|consen  242 --------------ASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPN  284 (1049)
T ss_pred             --------------cCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCC
Confidence                          3677888899999999999999987799999999999999975

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.92  E-value=5.2e-22  Score=171.82  Aligned_cols=296  Identities=12%  Similarity=0.177  Sum_probs=207.8

Q ss_pred             CCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccC
Q 019059           24 ADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYG  103 (346)
Q Consensus        24 ~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~  103 (346)
                      .++.-.++++|.    .++.+.+|++...+   ...++.++...|+++.=+|-=..++.    |-.+|+|.++|+.    
T Consensus       168 P~TYLNKIvvGs----~~G~lql~Nvrt~K---~v~~f~~~~s~IT~ieqsPaLDVVai----G~~~G~ViifNlK----  232 (910)
T KOG1539|consen  168 PSTYLNKIVVGS----SQGRLQLWNVRTGK---VVYTFQEFFSRITAIEQSPALDVVAI----GLENGTVIIFNLK----  232 (910)
T ss_pred             chhheeeEEEee----cCCcEEEEEeccCc---EEEEecccccceeEeccCCcceEEEE----eccCceEEEEEcc----
Confidence            444556677763    67889999988753   34567788899999999996655555    4689999999998    


Q ss_pred             CCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeec---------------------
Q 019059          104 QLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK---------------------  162 (346)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~---------------------  162 (346)
                           ..+.+.+++...+.|+.++|..||..++++++..|.+.+||++..+....+...                     
T Consensus       233 -----~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~  307 (910)
T KOG1539|consen  233 -----FDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAG  307 (910)
T ss_pred             -----cCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeecc
Confidence                 778888996556999999999999987777777899999999865433222210                     


Q ss_pred             ---------------------ccCCCceeeEEEEeC-CCCCcEEEEecCCeEE---------------------------
Q 019059          163 ---------------------QSSGMLHYLSGGAWD-PHDVNAVAATCESSVQ---------------------------  193 (346)
Q Consensus       163 ---------------------~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~---------------------------  193 (346)
                                           ...+|..+..++.|. .++..+.+++.|++++                           
T Consensus       308 ~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~  387 (910)
T KOG1539|consen  308 ADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNV  387 (910)
T ss_pred             CCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccc
Confidence                                 012344444445444 3344444444444322                           


Q ss_pred             --------------------------------------EEEccCCCc-cceeecc-----c--eeEEEeCCCCCcEEEEe
Q 019059          194 --------------------------------------FWDLRSMGK-TNSIEHA-----H--VRNVDYDTKKKHLLVTA  227 (346)
Q Consensus       194 --------------------------------------i~d~~~~~~-~~~~~~~-----~--v~~~~~~~~~~~~l~~~  227 (346)
                                                            .|+.+.... ...+.+.     .  +++++.++-|+ +.+.|
T Consensus       388 ~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGN-F~~IG  466 (910)
T KOG1539|consen  388 FSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGN-FVFIG  466 (910)
T ss_pred             cchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCc-eEEEe
Confidence                                                  222222211 0111111     1  77888888887 78889


Q ss_pred             cCCCeEEEEEcccCCcceeee---cCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCc-----
Q 019059          228 ADESGIHLWDLRMLKAPIQEL---PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESP-----  299 (346)
Q Consensus       228 ~~dg~i~i~d~~~~~~~~~~~---~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-----  299 (346)
                      ...|.|-+|++++ +.....+   ..|..+|+.++....+ +.+++++.+|.+++||.......  ..-....+.     
T Consensus       467 ~S~G~Id~fNmQS-Gi~r~sf~~~~ah~~~V~gla~D~~n-~~~vsa~~~Gilkfw~f~~k~l~--~~l~l~~~~~~iv~  542 (910)
T KOG1539|consen  467 YSKGTIDRFNMQS-GIHRKSFGDSPAHKGEVTGLAVDGTN-RLLVSAGADGILKFWDFKKKVLK--KSLRLGSSITGIVY  542 (910)
T ss_pred             ccCCeEEEEEccc-CeeecccccCccccCceeEEEecCCC-ceEEEccCcceEEEEecCCccee--eeeccCCCcceeee
Confidence            9999999999997 5455666   4799999999999888 99999999999999999874310  000000000     


Q ss_pred             -------------------cccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          300 -------------------NQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       300 -------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                                         .....+.+..+.+|...|++++|||+|+ .|++++.|++||+||+-
T Consensus       543 hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~Dgr-WlisasmD~tIr~wDlp  606 (910)
T KOG1539|consen  543 HRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGR-WLISASMDSTIRTWDLP  606 (910)
T ss_pred             eehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCc-EEEEeecCCcEEEEecc
Confidence                               0123345677889999999999999997 78999999999999974

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=4.3e-23  Score=166.44  Aligned_cols=234  Identities=17%  Similarity=0.289  Sum_probs=183.8

Q ss_pred             CcceEEEeecccCCCCeEEEEEecCCCCeEEEe------------------eeeccccceEEeeecCCCCceEEEEeecC
Q 019059           27 DHTSFLTGTLSLKEENEVHLLRLSSGGTELICE------------------GLFSHPNEIWDLSSCPFDQRIFSTVFSTG   88 (346)
Q Consensus        27 ~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~------------------~~~~h~~~v~~~~~~~~~~~l~~~~~~~~   88 (346)
                      .+.-+++|++    +..|.+|+++-....+...                  ...+|.+.|.+++|+..-+.+++.   |+
T Consensus       191 ~gNyvAiGtm----dp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaS---gs  263 (463)
T KOG0270|consen  191 AGNYVAIGTM----DPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLAS---GS  263 (463)
T ss_pred             CcceEEEecc----CceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEe---cC
Confidence            3457788875    4589999987432222111                  123699999999999998888887   69


Q ss_pred             CcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCc
Q 019059           89 ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGML  168 (346)
Q Consensus        89 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  168 (346)
                      .|.+|++||+.         .+++..++..|...|.++.|+|.....+++|+.|++|.+.|.+..........     ..
T Consensus       264 aD~TV~lWD~~---------~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-----~~  329 (463)
T KOG0270|consen  264 ADKTVKLWDVD---------TGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-----FD  329 (463)
T ss_pred             CCceEEEEEcC---------CCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-----ec
Confidence            99999999999         88999999889999999999999998888999999999999995332222211     23


Q ss_pred             eeeEEEEeCCCCCcEE-EEecCCeEEEEEccCC-Cccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCc
Q 019059          169 HYLSGGAWDPHDVNAV-AATCESSVQFWDLRSM-GKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA  243 (346)
Q Consensus       169 ~~v~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~-~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  243 (346)
                      ..|..++|+|.....+ ++..||+|+-+|+|.. +++.++. +|   |.+|++++.-++++++++.|+.|++|++.... 
T Consensus       330 g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~-AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~-  407 (463)
T KOG0270|consen  330 GEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLK-AHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS-  407 (463)
T ss_pred             cceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEE-eccCCcceEEecCCCCcceeeccccceEEEEeecCCC-
Confidence            3799999999877644 5557999999999977 6777776 66   99999999999899999999999999987522 


Q ss_pred             ceeeecCCC---cceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          244 PIQELPGHT---HWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       244 ~~~~~~~~~---~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      +.. ...|.   +...|.++.|+-+..++.|+..+.++|||+.+
T Consensus       408 ~~~-v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~  450 (463)
T KOG0270|consen  408 PKS-VKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFT  450 (463)
T ss_pred             Ccc-cccccccccceeecccCCCcceEEEecCccceEEEeeccc
Confidence            221 11222   34677888888878889999999999999987

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.92  E-value=6.4e-22  Score=167.98  Aligned_cols=306  Identities=19%  Similarity=0.267  Sum_probs=217.1

Q ss_pred             eeeecccceeeEeeeccCCCCcc-eEEEeecccCCCCeEEEEEecCCC--C---------------e-EEE---------
Q 019059            7 GIGYGLKYQARCISDVKADTDHT-SFLTGTLSLKEENEVHLLRLSSGG--T---------------E-LIC---------   58 (346)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~i~~~~~~~~~--~---------------~-~~~---------   58 (346)
                      ...-.++.+..+|.++.+..-.. .+.+.  +.+.+..|++|++....  .               . ...         
T Consensus       182 ~~v~el~GH~DWIrsl~f~~~~~~~~~la--S~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~  259 (764)
T KOG1063|consen  182 ARVAELEGHTDWIRSLAFARLGGDDLLLA--SSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISF  259 (764)
T ss_pred             eEEEEeeccchhhhhhhhhccCCCcEEEE--ecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEeh
Confidence            44445666677777777544332 33332  23578899999876432  0               0 000         


Q ss_pred             -eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeee---eccCCceEEEEeecCCCC
Q 019059           59 -EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL---DAHVGKINCVLWWSSGRH  134 (346)
Q Consensus        59 -~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~  134 (346)
                       ..+.+|.+.|.++.|+|.+..|+++    +.|.++.+|.-++.     +.-......+   .+.........|+|++. 
T Consensus       260 eall~GHeDWV~sv~W~p~~~~LLSA----SaDksmiiW~pd~~-----tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~-  329 (764)
T KOG1063|consen  260 EALLMGHEDWVYSVWWHPEGLDLLSA----SADKSMIIWKPDEN-----TGIWVDVVRLGEVGGSAGGFWGGLWSPNSN-  329 (764)
T ss_pred             hhhhcCcccceEEEEEccchhhheec----ccCcceEEEecCCc-----cceEEEEEEeecccccccceeeEEEcCCCC-
Confidence             2245999999999999999888886    69999999987621     0112222222   23345688999999997 


Q ss_pred             cEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCC-------------
Q 019059          135 DKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG-------------  201 (346)
Q Consensus       135 ~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-------------  201 (346)
                      .+++.+..|..++|...  ....-.......+|...|.+++|+|.|.+|++++.|.+-|++-.-..+             
T Consensus       330 ~ii~~g~~Gg~hlWkt~--d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHG  407 (764)
T KOG1063|consen  330 VIIAHGRTGGFHLWKTK--DKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHG  407 (764)
T ss_pred             EEEEecccCcEEEEecc--CccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeeccccccc
Confidence            46666889999999932  222223334457899999999999999999999999887775321000             


Q ss_pred             ----------------------ccceee----------------------------------------------------
Q 019059          202 ----------------------KTNSIE----------------------------------------------------  207 (346)
Q Consensus       202 ----------------------~~~~~~----------------------------------------------------  207 (346)
                                            .++.+.                                                    
T Consensus       408 yDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~  487 (764)
T KOG1063|consen  408 YDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAV  487 (764)
T ss_pred             ccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccce
Confidence                                  000000                                                    


Q ss_pred             ----------------------------------ccc---eeEEEeCCCCCcEEEEecCC-----CeEEEEEcccCCcce
Q 019059          208 ----------------------------------HAH---VRNVDYDTKKKHLLVTAADE-----SGIHLWDLRMLKAPI  245 (346)
Q Consensus       208 ----------------------------------~~~---v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~  245 (346)
                                                        -+|   |.+++.+|+++ ++++++..     ..|++|+..+. ..+
T Consensus       488 ~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gn-liASaCKS~~~ehAvI~lw~t~~W-~~~  565 (764)
T KOG1063|consen  488 CAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGN-LIASACKSSLKEHAVIRLWNTANW-LQV  565 (764)
T ss_pred             eeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCC-EEeehhhhCCccceEEEEEeccch-hhh
Confidence                                              013   88999999998 88887754     35889998874 456


Q ss_pred             eeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCC
Q 019059          246 QELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSR  325 (346)
Q Consensus       246 ~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  325 (346)
                      ..+.+|.-.|+.++|||++ ++|++.+.|.++.+|........+               ......+.|+.-|++.+|+|+
T Consensus       566 ~~L~~HsLTVT~l~FSpdg-~~LLsvsRDRt~sl~~~~~~~~~e---------------~~fa~~k~HtRIIWdcsW~pd  629 (764)
T KOG1063|consen  566 QELEGHSLTVTRLAFSPDG-RYLLSVSRDRTVSLYEVQEDIKDE---------------FRFACLKAHTRIIWDCSWSPD  629 (764)
T ss_pred             heecccceEEEEEEECCCC-cEEEEeecCceEEeeeeecccchh---------------hhhccccccceEEEEcccCcc
Confidence            7899999999999999999 999999999999999886511111               112336789999999999999


Q ss_pred             CCcEEEEeecCCeEEEeeec
Q 019059          326 EPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       326 ~~~~l~s~~~d~~v~vw~~~  345 (346)
                      +. .++|+|.|.+|++|.+.
T Consensus       630 e~-~FaTaSRDK~VkVW~~~  648 (764)
T KOG1063|consen  630 EK-YFATASRDKKVKVWEEP  648 (764)
T ss_pred             cc-eeEEecCCceEEEEecc
Confidence            97 79999999999999875

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.92  E-value=9.4e-22  Score=161.31  Aligned_cols=307  Identities=13%  Similarity=0.193  Sum_probs=209.1

Q ss_pred             eEeeeccCCCCcceEEEeeccc----CCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcce
Q 019059           17 RCISDVKADTDHTSFLTGTLSL----KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYG   92 (346)
Q Consensus        17 ~~~~~~~~~~~~~~~~~g~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~   92 (346)
                      ..+..+...|+..+++.|....    .....+++|+--....   ...+-.....|.+++|++-+.--..+..+.+.+..
T Consensus       105 ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~T---L~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~  181 (626)
T KOG2106|consen  105 DDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLST---LHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHM  181 (626)
T ss_pred             CceEEEeecCCceeeccCcccccCCCcCCCeeeeccccccee---eeeeccccccceeeeecccCCCceEEEecCCCccc
Confidence            3566777888888888774432    1234566664332221   22222455689999999854332222335677888


Q ss_pred             EEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeE
Q 019059           93 AAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLS  172 (346)
Q Consensus        93 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~  172 (346)
                      +.|||..         ........+...+.|....|+|.++.++++.+ .+.+.+|+.+++....+.-..+... ...|.
T Consensus       182 lSVWdWq---------k~~~~~~vk~sne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~e-kk~Vl  250 (626)
T KOG2106|consen  182 LSVWDWQ---------KKAKLGPVKTSNEVVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKRE-KKFVL  250 (626)
T ss_pred             cchhhch---------hhhccCcceeccceEEEEEeccCCCcEEEEeC-CceEEEEEccCCceEEEeecccccc-ceEEE
Confidence            9999998         45555556666788999999999997555554 7999999998776444433322222 36899


Q ss_pred             EEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCc------
Q 019059          173 GGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA------  243 (346)
Q Consensus       173 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------  243 (346)
                      +++|.+++. ++++.++|.|.||+..+.+..+... .|   |.++..-.+|.  |++|+.|..|..||-. .++      
T Consensus       251 ~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~Gt--llSGgKDRki~~Wd~~-y~k~r~~el  325 (626)
T KOG2106|consen  251 CVTFLENGD-VITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRDGT--LLSGGKDRKIILWDDN-YRKLRETEL  325 (626)
T ss_pred             EEEEcCCCC-EEeecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecCcc--EeecCccceEEecccc-ccccccccC
Confidence            999999876 8899999999999998877666666 66   99999999996  6669999999999832 110      


Q ss_pred             -----cee-----------------------------eecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCC---
Q 019059          244 -----PIQ-----------------------------ELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSN---  286 (346)
Q Consensus       244 -----~~~-----------------------------~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~---  286 (346)
                           +++                             ...+|......++.+|+. .++++++.|+.+++|+-....   
T Consensus       326 Pe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~-~q~~T~gqdk~v~lW~~~k~~wt~  404 (626)
T KOG2106|consen  326 PEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSK-NQLLTCGQDKHVRLWNDHKLEWTK  404 (626)
T ss_pred             chhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCCh-hheeeccCcceEEEccCCceeEEE
Confidence                 111                             123577778889999999 999999999999999922210   


Q ss_pred             CCCCCcccccCCccc----------------cccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          287 HDELPSESLVESPNQ----------------RANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       287 ~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      ..+.+.......|..                .....+..... ..+++.++|+|+|. +||.|+.|+.|+||.++
T Consensus       405 ~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~-~lAvgs~d~~iyiy~Vs  477 (626)
T KOG2106|consen  405 IIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGA-FLAVGSHDNHIYIYRVS  477 (626)
T ss_pred             EecCceeEeeccCcceEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCC-EEEEecCCCeEEEEEEC
Confidence            001111111111100                11122222222 66899999999997 99999999999999874

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=3.3e-23  Score=161.93  Aligned_cols=245  Identities=12%  Similarity=0.171  Sum_probs=183.1

Q ss_pred             CCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecC-CCCcEEEEecCCeEEEEEcCCCCCCceeeecccCC
Q 019059           88 GESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSS-GRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG  166 (346)
Q Consensus        88 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~  166 (346)
                      -+.+.|++||..         +++.+..++++...++.+.|..+ +.+.+++++.||.|++||++...+.........+ 
T Consensus        47 lSngsv~lyd~~---------tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~-  116 (376)
T KOG1188|consen   47 LSNGSVRLYDKG---------TGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS-  116 (376)
T ss_pred             ecCCeEEEEecc---------chhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC-
Confidence            477899999998         78899999999999999999875 6677888888999999999987655555444322 


Q ss_pred             CceeeEEEEeCCCCCcEEEEec----CCeEEEEEccCCCc-cceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEc
Q 019059          167 MLHYLSGGAWDPHDVNAVAATC----ESSVQFWDLRSMGK-TNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDL  238 (346)
Q Consensus       167 ~~~~v~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~-~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~  238 (346)
                       ..+..+++.+-.++.++++..    +..|.+||.|..+. ++.+...|   |+++.|+|..+++|++|+.||-|.+||+
T Consensus       117 -~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~  195 (376)
T KOG1188|consen  117 -GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT  195 (376)
T ss_pred             -CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence             235667776656666666653    67899999998876 77777777   9999999999999999999999999999


Q ss_pred             ccCCc--ceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCccc-ccCC----------------c
Q 019059          239 RMLKA--PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSES-LVES----------------P  299 (346)
Q Consensus       239 ~~~~~--~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~----------------~  299 (346)
                      .....  ++...-.|...|.++.|..++-..|.+-+...+..+|+++.+......... ....                +
T Consensus       196 ~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~  275 (376)
T KOG1188|consen  196 KKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSP  275 (376)
T ss_pred             CCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccC
Confidence            86432  333444578889999999887567999999999999999876421100000 0000                0


Q ss_pred             -------------------------ccccccccccccc-ccceeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059          300 -------------------------NQRANSLLNSYSD-YEDSVYGLAWSSREPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       300 -------------------------~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~  344 (346)
                                               .....+.+..+.+ |...|+++.|...+. ++.+||+||.+.+|..
T Consensus       276 ~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~-~l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  276 GDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKND-VLYTGGEDGLLQAWKV  345 (376)
T ss_pred             CCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccc-eeeccCCCceEEEEec
Confidence                                     0011222333444 666788899987776 9999999999999984

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.92  E-value=4.3e-23  Score=168.86  Aligned_cols=218  Identities=16%  Similarity=0.212  Sum_probs=179.0

Q ss_pred             EEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEE
Q 019059           69 WDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLW  148 (346)
Q Consensus        69 ~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vw  148 (346)
                      .|++......++++    ||..+.|+|||+.         ...+.+.++.|++.|+++.++....+ +++.+..|.|.|.
T Consensus        83 ~Cv~~~s~S~y~~s----gG~~~~Vkiwdl~---------~kl~hr~lkdh~stvt~v~YN~~Dey-iAsvs~gGdiiih  148 (673)
T KOG4378|consen   83 FCVACASQSLYEIS----GGQSGCVKIWDLR---------AKLIHRFLKDHQSTVTYVDYNNTDEY-IASVSDGGDIIIH  148 (673)
T ss_pred             HHHhhhhcceeeec----cCcCceeeehhhH---------HHHHhhhccCCcceeEEEEecCCcce-eEEeccCCcEEEE
Confidence            44444444567766    5899999999998         55666778999999999999988886 5555778999999


Q ss_pred             EcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEE-EEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEE
Q 019059          149 SLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAV-AATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLL  224 (346)
Q Consensus       149 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l  224 (346)
                      .+.++.....+....    ...+.-+.|+|..++++ +++.+|.|.+||.....+...+...|   ...|+|+|..+.+|
T Consensus       149 ~~~t~~~tt~f~~~s----gqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~  224 (673)
T KOG4378|consen  149 GTKTKQKTTTFTIDS----GQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALL  224 (673)
T ss_pred             ecccCccccceecCC----CCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceE
Confidence            998876554443321    22677899999887755 55678999999999998888887777   88999999999889


Q ss_pred             EEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccc
Q 019059          225 VTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRAN  304 (346)
Q Consensus       225 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  304 (346)
                      ++.+.|+.|.+||++. +.....+. ...+.+.++|.++| .+|+.|+..|.|..||++.                  ..
T Consensus       225 vsVG~Dkki~~yD~~s-~~s~~~l~-y~~Plstvaf~~~G-~~L~aG~s~G~~i~YD~R~------------------~k  283 (673)
T KOG4378|consen  225 VSVGYDKKINIYDIRS-QASTDRLT-YSHPLSTVAFSECG-TYLCAGNSKGELIAYDMRS------------------TK  283 (673)
T ss_pred             EEecccceEEEeeccc-ccccceee-ecCCcceeeecCCc-eEEEeecCCceEEEEeccc------------------CC
Confidence            9999999999999996 44454444 46789999999999 9999999999999999998                  47


Q ss_pred             ccccccccccceeeEEEeCCC
Q 019059          305 SLLNSYSDYEDSVYGLAWSSR  325 (346)
Q Consensus       305 ~~~~~~~~~~~~v~~~~~~~~  325 (346)
                      .++.++..|...|++++|.|.
T Consensus       284 ~Pv~v~sah~~sVt~vafq~s  304 (673)
T KOG4378|consen  284 APVAVRSAHDASVTRVAFQPS  304 (673)
T ss_pred             CCceEeeecccceeEEEeeec
Confidence            788999999999999999885

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.91  E-value=5.6e-22  Score=168.32  Aligned_cols=278  Identities=19%  Similarity=0.267  Sum_probs=198.2

Q ss_pred             CeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCC-ceEEEEeecCCcceEEEEecCcccCCC------------CCc
Q 019059           42 NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQ-RIFSTVFSTGESYGAAIWQIPELYGQL------------NSP  108 (346)
Q Consensus        42 ~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~~~~~d~~i~vw~~~~~~~~~------------~~~  108 (346)
                      ..+.+.... ..+......+.+|.+.|.+++|...+. .++.+.  +++|..|+||.+.......            +.+
T Consensus       169 ~~v~~~s~~-~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS--~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~  245 (764)
T KOG1063|consen  169 FVVDLYSSS-ADSFARVAELEGHTDWIRSLAFARLGGDDLLLAS--SSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLP  245 (764)
T ss_pred             eEEEEeccC-CcceeEEEEeeccchhhhhhhhhccCCCcEEEEe--cCCceEEEEEEEEecCCccccccccccccccCCc
Confidence            334444333 224445577899999999999987655 333332  6999999999986332110            111


Q ss_pred             cceeee----------eeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCce--eeecccCCCceeeEEEEe
Q 019059          109 QLERIA----------ALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQ--VQSKQSSGMLHYLSGGAW  176 (346)
Q Consensus       109 ~~~~~~----------~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~--~~~~~~~~~~~~v~~~~~  176 (346)
                      ......          .+.+|++.|+++.|+|.+.. +++++.|.++.+|..++..-...  .......+......+..|
T Consensus       246 ~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~-LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw  324 (764)
T KOG1063|consen  246 VFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLD-LLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLW  324 (764)
T ss_pred             eeeeeeeEEEEEehhhhhcCcccceEEEEEccchhh-heecccCcceEEEecCCccceEEEEEEeecccccccceeeEEE
Confidence            111111          13489999999999999964 77777899999999876532222  222223333446788999


Q ss_pred             CCCCCcEEEEecCCeEEEEEccCCC--ccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcc----------cC
Q 019059          177 DPHDVNAVAATCESSVQFWDLRSMG--KTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLR----------ML  241 (346)
Q Consensus       177 ~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~----------~~  241 (346)
                      +|++..+++-+..|..++|-.....  .......+|   |++++|+|.|+ +|++.+.|-+-|+|-.-          .+
T Consensus       325 ~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGe-flLsvs~DQTTRlFa~wg~q~~wHEiaRP  403 (764)
T KOG1063|consen  325 SPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGE-FLLSVSLDQTTRLFARWGRQQEWHEIARP  403 (764)
T ss_pred             cCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCC-EEEEeccccceeeecccccccceeeeccc
Confidence            9999999999999999999833221  112223466   99999999998 67777777666654211          00


Q ss_pred             C-------------------------------------------------------------------------------
Q 019059          242 K-------------------------------------------------------------------------------  242 (346)
Q Consensus       242 ~-------------------------------------------------------------------------------  242 (346)
                      .                                                                               
T Consensus       404 QiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~  483 (764)
T KOG1063|consen  404 QIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGG  483 (764)
T ss_pred             ccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccccccc
Confidence            0                                                                               


Q ss_pred             --------------------------------cceeeecCCCcceEEEEeCCCCCcEEEEecCC-----CeEEEEecCCC
Q 019059          243 --------------------------------APIQELPGHTHWTWAVCCNPEYDGFILSAGTD-----STVNLWLVSTS  285 (346)
Q Consensus       243 --------------------------------~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d-----~~i~iwd~~~~  285 (346)
                                                      ..++.+.+|...|.+++.+|++ +++|++...     ..|++|+..+ 
T Consensus       484 ~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~g-nliASaCKS~~~ehAvI~lw~t~~-  561 (764)
T KOG1063|consen  484 EAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTG-NLIASACKSSLKEHAVIRLWNTAN-  561 (764)
T ss_pred             ccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCC-CEEeehhhhCCccceEEEEEeccc-
Confidence                                            0123346788999999999999 999998864     3699999998 


Q ss_pred             CCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          286 NHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                                        ...++.+.+|+-.|+.++||||++ +|++++.|+++.+|...
T Consensus       562 ------------------W~~~~~L~~HsLTVT~l~FSpdg~-~LLsvsRDRt~sl~~~~  602 (764)
T KOG1063|consen  562 ------------------WLQVQELEGHSLTVTRLAFSPDGR-YLLSVSRDRTVSLYEVQ  602 (764)
T ss_pred             ------------------hhhhheecccceEEEEEEECCCCc-EEEEeecCceEEeeeee
Confidence                              888889999999999999999997 89999999999999864

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.91  E-value=2.8e-23  Score=168.17  Aligned_cols=218  Identities=14%  Similarity=0.170  Sum_probs=168.9

Q ss_pred             cceeeeeeeccCCceEEEEeecCCC-CcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCC-CcEEEE
Q 019059          109 QLERIAALDAHVGKINCVLWWSSGR-HDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD-VNAVAA  186 (346)
Q Consensus       109 ~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~  186 (346)
                      .......++.+.++|++++|+|..+ .++++|...|+|-+||+.+.+... ........|..+|.++.|+|.. ..+++.
T Consensus       175 ~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~-d~v~~f~~hs~~Vs~l~F~P~n~s~i~ss  253 (498)
T KOG4328|consen  175 DYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDK-DGVYLFTPHSGPVSGLKFSPANTSQIYSS  253 (498)
T ss_pred             cceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCcc-CceEEeccCCccccceEecCCChhheeee
Confidence            3445556778899999999999987 555566678999999996332211 1112234577799999999965 568888


Q ss_pred             ecCCeEEEEEccCCCccceeec--cc--eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCC
Q 019059          187 TCESSVQFWDLRSMGKTNSIEH--AH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNP  262 (346)
Q Consensus       187 ~~d~~i~i~d~~~~~~~~~~~~--~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~  262 (346)
                      +.||+|++-|++.......+..  ..  +.++.|+.+.. .++.+..=|...+||+|..+.....+..|...|++|+++|
T Consensus       254 SyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~-~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP  332 (498)
T KOG4328|consen  254 SYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESR-SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNP  332 (498)
T ss_pred             ccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCc-cEEEeecccceEEEEeecCCccchhhhhhhcccceeecCC
Confidence            8999999999997753332222  23  88899998888 5666666679999999997776777888999999999999


Q ss_pred             CCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEe
Q 019059          263 EYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNH  342 (346)
Q Consensus       263 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw  342 (346)
                      ..+.+|||+|.|++.+|||++......               .++.....|...|.+..|||.+. .|++.+.|..|+||
T Consensus       333 ~~p~~laT~s~D~T~kIWD~R~l~~K~---------------sp~lst~~HrrsV~sAyFSPs~g-tl~TT~~D~~IRv~  396 (498)
T KOG4328|consen  333 VCPWFLATASLDQTAKIWDLRQLRGKA---------------SPFLSTLPHRRSVNSAYFSPSGG-TLLTTCQDNEIRVF  396 (498)
T ss_pred             CCchheeecccCcceeeeehhhhcCCC---------------CcceecccccceeeeeEEcCCCC-ceEeeccCCceEEe
Confidence            999999999999999999999722111               12233346888999999999997 58999999999999


Q ss_pred             ee
Q 019059          343 ML  344 (346)
Q Consensus       343 ~~  344 (346)
                      |.
T Consensus       397 ds  398 (498)
T KOG4328|consen  397 DS  398 (498)
T ss_pred             ec
Confidence            86

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.91  E-value=1.3e-21  Score=152.17  Aligned_cols=277  Identities=16%  Similarity=0.222  Sum_probs=200.7

Q ss_pred             EeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCC----------eEEEeeeeccccceEEeeec-------CCCCce
Q 019059           18 CISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGT----------ELICEGLFSHPNEIWDLSSC-------PFDQRI   80 (346)
Q Consensus        18 ~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~----------~~~~~~~~~h~~~v~~~~~~-------~~~~~l   80 (346)
                      .+..+.++|++..+++.    .+++.+.+|.++.+..          ......-......|.+.+|-       |+...+
T Consensus        51 f~kgckWSPDGSciL~~----sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~  126 (406)
T KOG2919|consen   51 FLKGCKWSPDGSCILSL----SEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLF  126 (406)
T ss_pred             hhccceeCCCCceEEee----cccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCcccee
Confidence            44456788999888775    4788899999875411          11111122234667777774       444444


Q ss_pred             EEEEeecCCcceEEEEecCcccCCCCCccceeeeeee--ccCCc---eEEEEeecCCCCcEEEEecCCeEEEEEcCC-CC
Q 019059           81 FSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD--AHVGK---INCVLWWSSGRHDKLVSIDEENIFLWSLDC-SN  154 (346)
Q Consensus        81 ~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~--~~~~~---i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~-~~  154 (346)
                      ++    .+.+.-|++||.-         +++....+.  .|.+.   ..+++|+|||.+ +++ +....|+++|+.. +.
T Consensus       127 a~----ssr~~PIh~wdaf---------tG~lraSy~~ydh~de~taAhsL~Fs~DGeq-lfa-GykrcirvFdt~RpGr  191 (406)
T KOG2919|consen  127 AV----SSRDQPIHLWDAF---------TGKLRASYRAYDHQDEYTAAHSLQFSPDGEQ-LFA-GYKRCIRVFDTSRPGR  191 (406)
T ss_pred             ee----ccccCceeeeecc---------ccccccchhhhhhHHhhhhheeEEecCCCCe-Eee-cccceEEEeeccCCCC
Confidence            44    4789999999987         555555543  34333   468999999995 444 4689999999943 33


Q ss_pred             CCc--eeeecccCCCceeeEEEEeCCCCC-cEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEec
Q 019059          155 KNA--QVQSKQSSGMLHYLSGGAWDPHDV-NAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAA  228 (346)
Q Consensus       155 ~~~--~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~  228 (346)
                      ...  ....+...+...-+.+++|+|... .++.++....+-||.-..+.+...+. +|   |+.+.|.++|+ .|++|.
T Consensus       192 ~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg-gh~gGvThL~~~edGn-~lfsGa  269 (406)
T KOG2919|consen  192 DCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG-GHGGGVTHLQWCEDGN-KLFSGA  269 (406)
T ss_pred             CCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeec-ccCCCeeeEEeccCcC-eecccc
Confidence            222  122222334456789999999665 68888888888888877777776665 66   99999999999 666665


Q ss_pred             -CCCeEEEEEcccCCcceeeecCCCc-ceEEE--EeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccc
Q 019059          229 -DESGIHLWDLRMLKAPIQELPGHTH-WTWAV--CCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRAN  304 (346)
Q Consensus       229 -~dg~i~i~d~~~~~~~~~~~~~~~~-~v~~v--~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  304 (346)
                       .|-.|-.||+|..+.++..+..|.. .-..|  ...|++ ++|++|+.||.|++||++.                  .+
T Consensus       270 Rk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~-~~LasG~tdG~V~vwdlk~------------------~g  330 (406)
T KOG2919|consen  270 RKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKG-EILASGDTDGSVRVWDLKD------------------LG  330 (406)
T ss_pred             cCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCC-ceeeccCCCccEEEEecCC------------------CC
Confidence             5678999999998888888888776 33334  456888 9999999999999999997                  36


Q ss_pred             ccccccccccceeeEEEeCCCCCcEEEEeec
Q 019059          305 SLLNSYSDYEDSVYGLAWSSREPWIFASLSY  335 (346)
Q Consensus       305 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  335 (346)
                      ..+..+..|+..++.++++|.-+ ++|+++.
T Consensus       331 n~~sv~~~~sd~vNgvslnP~mp-ilatssG  360 (406)
T KOG2919|consen  331 NEVSVTGNYSDTVNGVSLNPIMP-ILATSSG  360 (406)
T ss_pred             CcccccccccccccceecCcccc-eeeeccC
Confidence            67778888899999999999876 7777764

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=2.1e-21  Score=169.78  Aligned_cols=255  Identities=15%  Similarity=0.218  Sum_probs=191.4

Q ss_pred             eeeccCCCCcceEEEeecccCCCCeEEEEEecCC-CCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEe
Q 019059           19 ISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSG-GTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQ   97 (346)
Q Consensus        19 ~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~   97 (346)
                      .+.+..++++. |++.   .+.++.|..|+...+ ..+   ..+..+...|.+++...  .+++++    +.+++|.+|.
T Consensus        16 ~t~i~~d~~ge-fi~t---cgsdg~ir~~~~~sd~e~P---~ti~~~g~~v~~ia~~s--~~f~~~----s~~~tv~~y~   82 (933)
T KOG1274|consen   16 LTLICYDPDGE-FICT---CGSDGDIRKWKTNSDEEEP---ETIDISGELVSSIACYS--NHFLTG----SEQNTVLRYK   82 (933)
T ss_pred             eEEEEEcCCCC-EEEE---ecCCCceEEeecCCcccCC---chhhccCceeEEEeecc--cceEEe----eccceEEEee
Confidence            44555666665 4432   367888999886654 221   22222778888887654  466664    6999999999


Q ss_pred             cCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeC
Q 019059           98 IPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWD  177 (346)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~  177 (346)
                      ++         .++.-..+...+-++.+++|+.+|++ ++++++|-.|++.++........+     .+|..+|.++.|+
T Consensus        83 fp---------s~~~~~iL~Rftlp~r~~~v~g~g~~-iaagsdD~~vK~~~~~D~s~~~~l-----rgh~apVl~l~~~  147 (933)
T KOG1274|consen   83 FP---------SGEEDTILARFTLPIRDLAVSGSGKM-IAAGSDDTAVKLLNLDDSSQEKVL-----RGHDAPVLQLSYD  147 (933)
T ss_pred             CC---------CCCccceeeeeeccceEEEEecCCcE-EEeecCceeEEEEeccccchheee-----cccCCceeeeeEc
Confidence            98         44444445556778999999999995 777788999999999876543333     3577799999999


Q ss_pred             CCCCcEEEEecCCeEEEEEccCCCccceeec---------cc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceee
Q 019059          178 PHDVNAVAATCESSVQFWDLRSMGKTNSIEH---------AH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQE  247 (346)
Q Consensus       178 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---------~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  247 (346)
                      |++.+|++.+.||.|++||+.++....++..         .. +..++|+|++. .++....|+.|++|+.... .+...
T Consensus       148 p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g-~la~~~~d~~Vkvy~r~~w-e~~f~  225 (933)
T KOG1274|consen  148 PKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGG-TLAVPPVDNTVKVYSRKGW-ELQFK  225 (933)
T ss_pred             CCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCC-eEEeeccCCeEEEEccCCc-eehee
Confidence            9999999999999999999999887665541         11 78899999987 5677778899999998763 34444


Q ss_pred             ec--CCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCC
Q 019059          248 LP--GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSR  325 (346)
Q Consensus       248 ~~--~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  325 (346)
                      +.  .+...+..+.|+|+| .|||+++.||.|.|||..+                   -+.    ......|.+++|.|+
T Consensus       226 Lr~~~~ss~~~~~~wsPnG-~YiAAs~~~g~I~vWnv~t-------------------~~~----~~~~~~Vc~~aw~p~  281 (933)
T KOG1274|consen  226 LRDKLSSSKFSDLQWSPNG-KYIAASTLDGQILVWNVDT-------------------HER----HEFKRAVCCEAWKPN  281 (933)
T ss_pred             ecccccccceEEEEEcCCC-cEEeeeccCCcEEEEeccc-------------------chh----ccccceeEEEecCCC
Confidence            43  244559999999999 9999999999999999996                   221    122446999999998


Q ss_pred             CC
Q 019059          326 EP  327 (346)
Q Consensus       326 ~~  327 (346)
                      .+
T Consensus       282 ~n  283 (933)
T KOG1274|consen  282 AN  283 (933)
T ss_pred             CC
Confidence            87

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.91  E-value=4.3e-22  Score=167.80  Aligned_cols=137  Identities=23%  Similarity=0.385  Sum_probs=115.1

Q ss_pred             CCeEEEEEccCCCcc-----ceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCC------cceeeecCCCcceE
Q 019059          189 ESSVQFWDLRSMGKT-----NSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK------APIQELPGHTHWTW  256 (346)
Q Consensus       189 d~~i~i~d~~~~~~~-----~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~~v~  256 (346)
                      .|.|-||+++..-.+     ..+..+. |+.+.|+|.+...|+++++||.|++|.+...+      .+...+..|...|+
T Consensus       602 gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~  681 (1012)
T KOG1445|consen  602 GGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKIT  681 (1012)
T ss_pred             CceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEE
Confidence            344677777643321     2222333 99999999988899999999999999987533      35677889999999


Q ss_pred             EEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecC
Q 019059          257 AVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYD  336 (346)
Q Consensus       257 ~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  336 (346)
                      ++.|+|--...|++++.|-+|++||+++                   .+....+.+|.+.|.+++|||+|+ .+|+.+.|
T Consensus       682 slRfHPLAadvLa~asyd~Ti~lWDl~~-------------------~~~~~~l~gHtdqIf~~AWSpdGr-~~AtVcKD  741 (1012)
T KOG1445|consen  682 SLRFHPLAADVLAVASYDSTIELWDLAN-------------------AKLYSRLVGHTDQIFGIAWSPDGR-RIATVCKD  741 (1012)
T ss_pred             EEEecchhhhHhhhhhccceeeeeehhh-------------------hhhhheeccCcCceeEEEECCCCc-ceeeeecC
Confidence            9999998878999999999999999998                   888889999999999999999997 89999999


Q ss_pred             CeEEEeeec
Q 019059          337 GRVRNHMLE  345 (346)
Q Consensus       337 ~~v~vw~~~  345 (346)
                      |+|++|+..
T Consensus       742 g~~rVy~Pr  750 (1012)
T KOG1445|consen  742 GTLRVYEPR  750 (1012)
T ss_pred             ceEEEeCCC
Confidence            999999754

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.90  E-value=1.2e-21  Score=150.19  Aligned_cols=258  Identities=16%  Similarity=0.268  Sum_probs=187.2

Q ss_pred             eccccceEEeeec--CCCC-ceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCC----C
Q 019059           62 FSHPNEIWDLSSC--PFDQ-RIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGR----H  134 (346)
Q Consensus        62 ~~h~~~v~~~~~~--~~~~-~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~  134 (346)
                      +.-+-.+.++.|+  |+.+ +|+.+.+.......|.|-.+.+.     ..+.....++ .|.-+++.+.|.|+..    .
T Consensus        41 Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~-----s~e~~~~a~f-d~~YP~tK~~wiPd~~g~~pd  114 (364)
T KOG0290|consen   41 YNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDED-----SGELVEDANF-DHPYPVTKLMWIPDSKGVYPD  114 (364)
T ss_pred             ecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccC-----CCceeccCCC-CCCCCccceEecCCccccCcc
Confidence            3445678889998  3434 44444333334567888777631     1122222333 7888999999999873    2


Q ss_pred             cEEEEecCCeEEEEEcCCCCCCcee----eecccCCCceeeEEEEeCCCCCcE-EEEecCCeEEEEEccCCCc--cceee
Q 019059          135 DKLVSIDEENIFLWSLDCSNKNAQV----QSKQSSGMLHYLSGGAWDPHDVNA-VAATCESSVQFWDLRSMGK--TNSIE  207 (346)
Q Consensus       135 ~~~~~~~d~~i~vwd~~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~--~~~~~  207 (346)
                       +++++ +..+++|.+.........    .......+..+++++.|+.-...+ .+.+-|.+..|||++++..  +++.-
T Consensus       115 -lLATs-~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQL  192 (364)
T KOG0290|consen  115 -LLATS-SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQL  192 (364)
T ss_pred             -hhhcc-cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEE
Confidence             34443 469999998743221111    112233455689999999866554 4555699999999999743  33333


Q ss_pred             ccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecC--CCcceEEEEeCCCCCcEEEEecCCC-eEEEEe
Q 019059          208 HAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG--HTHWTWAVCCNPEYDGFILSAGTDS-TVNLWL  281 (346)
Q Consensus       208 ~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~v~~v~~~~~~~~~l~s~~~d~-~i~iwd  281 (346)
                      .+|   |..|+|...+..+|++.+.||.||+||+|......-.++.  ...+...++|+++.++++|+-..|. .|.|.|
T Consensus       193 IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLD  272 (364)
T KOG0290|consen  193 IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILD  272 (364)
T ss_pred             EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEE
Confidence            355   9999999988889999999999999999975543333332  2467889999999989999877765 799999


Q ss_pred             cCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          282 VSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      ++.                  ...++..+.+|.+.|+.++|.|..+..+++++.|..+.+||++
T Consensus       273 iR~------------------P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~  318 (364)
T KOG0290|consen  273 IRV------------------PCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQ  318 (364)
T ss_pred             ecC------------------CCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecc
Confidence            998                  4788999999999999999999888899999999999999985

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=3.4e-22  Score=155.08  Aligned_cols=212  Identities=17%  Similarity=0.274  Sum_probs=157.9

Q ss_pred             eeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCC--CceeeecccCCCceeeEEEEeCCCCCcEEEEec-CC
Q 019059          114 AALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNK--NAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-ES  190 (346)
Q Consensus       114 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~  190 (346)
                      ..+++|...|++++|+.||++ +++.+.|+.|++|+++.-..  ...+...-..+   ..+.++|.||.+.+++... ..
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~-lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~d---hpT~V~FapDc~s~vv~~~~g~  155 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKK-LATISGDRSIRLWDVRDFENKEHRCIRQNVEYD---HPTRVVFAPDCKSVVVSVKRGN  155 (420)
T ss_pred             hhhhccCCceeeeEEcCCCce-eEEEeCCceEEEEecchhhhhhhhHhhccccCC---CceEEEECCCcceEEEEEccCC
Confidence            357899999999999999996 66667899999999875211  11111111112   4578899999988777664 56


Q ss_pred             eEEEEEccCCC---ccc--------eeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceE
Q 019059          191 SVQFWDLRSMG---KTN--------SIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTW  256 (346)
Q Consensus       191 ~i~i~d~~~~~---~~~--------~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~  256 (346)
                      ++++|-+...+   ...        .+...|   +..+-....+. ++++++.|..|.+|+++  ++.+..+......-+
T Consensus       156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k-~imsas~dt~i~lw~lk--Gq~L~~idtnq~~n~  232 (420)
T KOG2096|consen  156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAK-YIMSASLDTKICLWDLK--GQLLQSIDTNQSSNY  232 (420)
T ss_pred             EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCce-EEEEecCCCcEEEEecC--Cceeeeecccccccc
Confidence            89999876332   111        122223   55566666666 89999999999999998  667777777777778


Q ss_pred             EEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecC
Q 019059          257 AVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYD  336 (346)
Q Consensus       257 ~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  336 (346)
                      ..+.||+| +++++++.---|++|..-..+....           +.-..++.+++|++.|..++|+++.. .+++.|.|
T Consensus       233 ~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~f-----------qev~rvf~LkGH~saV~~~aFsn~S~-r~vtvSkD  299 (420)
T KOG2096|consen  233 DAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTF-----------QEVKRVFSLKGHQSAVLAAAFSNSST-RAVTVSKD  299 (420)
T ss_pred             ceeeCCCC-cEEEEecCCCCceEEEEEeccCcch-----------hhhhhhheeccchhheeeeeeCCCcc-eeEEEecC
Confidence            88999999 9999999888899998754221111           11355778899999999999999986 89999999


Q ss_pred             CeEEEeeec
Q 019059          337 GRVRNHMLE  345 (346)
Q Consensus       337 ~~v~vw~~~  345 (346)
                      |+++|||.+
T Consensus       300 G~wriwdtd  308 (420)
T KOG2096|consen  300 GKWRIWDTD  308 (420)
T ss_pred             CcEEEeecc
Confidence            999999974

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=6.1e-22  Score=153.43  Aligned_cols=248  Identities=15%  Similarity=0.165  Sum_probs=180.5

Q ss_pred             ccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecC
Q 019059           63 SHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDE  142 (346)
Q Consensus        63 ~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d  142 (346)
                      .|+. ..|+.|++.|.+|+++    ..+|.|-+||+.         +....+.+.+|..+|.+++||++|+. +++++.|
T Consensus        22 d~~~-a~~~~Fs~~G~~lAvG----c~nG~vvI~D~~---------T~~iar~lsaH~~pi~sl~WS~dgr~-LltsS~D   86 (405)
T KOG1273|consen   22 DNPL-AECCQFSRWGDYLAVG----CANGRVVIYDFD---------TFRIARMLSAHVRPITSLCWSRDGRK-LLTSSRD   86 (405)
T ss_pred             cCCc-cceEEeccCcceeeee----ccCCcEEEEEcc---------ccchhhhhhccccceeEEEecCCCCE-eeeecCC
Confidence            3444 7899999999999886    499999999998         67778889999999999999999994 8888899


Q ss_pred             CeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEe-cCCeEEEEEccCCC--ccceeeccc----eeEEE
Q 019059          143 ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT-CESSVQFWDLRSMG--KTNSIEHAH----VRNVD  215 (346)
Q Consensus       143 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~--~~~~~~~~~----v~~~~  215 (346)
                      ..|.+||+..+....++..      ..+|..+.|+|.....+.++ -+..-.+.++..++  .+..-..+.    ..+..
T Consensus        87 ~si~lwDl~~gs~l~rirf------~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~  160 (405)
T KOG1273|consen   87 WSIKLWDLLKGSPLKRIRF------DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGV  160 (405)
T ss_pred             ceeEEEeccCCCceeEEEc------cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccccccccccc
Confidence            9999999998886655554      33899999999877766655 23334455554422  111111111    44557


Q ss_pred             eCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCC-cceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCccc
Q 019059          216 YDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHT-HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSES  294 (346)
Q Consensus       216 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  294 (346)
                      |++.|+ ++++|...|.+.++|..+. +++..++... ..|..+.++..| +.|+.-+.|..||.|+++.......    
T Consensus       161 fdr~g~-yIitGtsKGkllv~~a~t~-e~vas~rits~~~IK~I~~s~~g-~~liiNtsDRvIR~ye~~di~~~~r----  233 (405)
T KOG1273|consen  161 FDRRGK-YIITGTSKGKLLVYDAETL-ECVASFRITSVQAIKQIIVSRKG-RFLIINTSDRVIRTYEISDIDDEGR----  233 (405)
T ss_pred             ccCCCC-EEEEecCcceEEEEecchh-eeeeeeeechheeeeEEEEeccC-cEEEEecCCceEEEEehhhhcccCc----
Confidence            899998 8999999999999999984 5777777655 789999999999 9999999999999999884111100    


Q ss_pred             ccCCcccccccccccccc--ccceeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059          295 LVESPNQRANSLLNSYSD--YEDSVYGLAWSSREPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~  344 (346)
                            ....++.+.++.  ...+-.++.|+.+|.+++++...-..++||.-
T Consensus       234 ------~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~  279 (405)
T KOG1273|consen  234 ------DGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEK  279 (405)
T ss_pred             ------cCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEec
Confidence                  000122222221  22234678899999855555555667999963

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.90  E-value=3e-21  Score=161.62  Aligned_cols=220  Identities=12%  Similarity=0.066  Sum_probs=156.7

Q ss_pred             cCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCC
Q 019059           87 TGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG  166 (346)
Q Consensus        87 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~  166 (346)
                      ++.|+.+.+||+.         +.+.+..+..+. .+.+++|+|+++.++++++.++.|++||..+++....+..     
T Consensus         7 ~~~d~~v~~~d~~---------t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-----   71 (300)
T TIGR03866         7 NEKDNTISVIDTA---------TLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS-----   71 (300)
T ss_pred             ecCCCEEEEEECC---------CCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC-----
Confidence            4789999999987         556667776554 4678999999986445566789999999987653322211     


Q ss_pred             CceeeEEEEeCCCCCcEEEEe-cCCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCC-eEEEEEcccCCc
Q 019059          167 MLHYLSGGAWDPHDVNAVAAT-CESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADES-GIHLWDLRMLKA  243 (346)
Q Consensus       167 ~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~  243 (346)
                      + ..+..++|+|+++.+++++ .++.|++||+++.+.+..+..+. +.+++|+|++. +++++..++ .+.+||.++ ..
T Consensus        72 ~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~d~~~-~~  148 (300)
T TIGR03866        72 G-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGK-IVVNTSETTNMAHFIDTKT-YE  148 (300)
T ss_pred             C-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCC-EEEEEecCCCeEEEEeCCC-Ce
Confidence            1 1346789999999887665 58999999999887776665444 88999999998 677766654 577889876 33


Q ss_pred             ceeeecCCCcceEEEEeCCCCCcEE-EEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccc-------cc
Q 019059          244 PIQELPGHTHWTWAVCCNPEYDGFI-LSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDY-------ED  315 (346)
Q Consensus       244 ~~~~~~~~~~~v~~v~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~  315 (346)
                      ....+. ....+..+.|+|++ .+| +++..++.|++||+++                   ++.+..+..+       ..
T Consensus       149 ~~~~~~-~~~~~~~~~~s~dg-~~l~~~~~~~~~v~i~d~~~-------------------~~~~~~~~~~~~~~~~~~~  207 (300)
T TIGR03866       149 IVDNVL-VDQRPRFAEFTADG-KELWVSSEIGGTVSVIDVAT-------------------RKVIKKITFEIPGVHPEAV  207 (300)
T ss_pred             EEEEEE-cCCCccEEEECCCC-CEEEEEcCCCCEEEEEEcCc-------------------ceeeeeeeecccccccccC
Confidence            333332 23455789999999 666 4555699999999997                   4443332211       11


Q ss_pred             eeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          316 SVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       316 ~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      ....++|+|+++.++++.+.++.+.+||++
T Consensus       208 ~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~  237 (300)
T TIGR03866       208 QPVGIKLTKDGKTAFVALGPANRVAVVDAK  237 (300)
T ss_pred             CccceEECCCCCEEEEEcCCCCeEEEEECC
Confidence            235688999998555666667889999975

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.90  E-value=9.1e-22  Score=150.68  Aligned_cols=229  Identities=12%  Similarity=0.212  Sum_probs=170.3

Q ss_pred             CcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEec---C----CeEEEEEcCCCCCCceeee
Q 019059           89 ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSID---E----ENIFLWSLDCSNKNAQVQS  161 (346)
Q Consensus        89 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---d----~~i~vwd~~~~~~~~~~~~  161 (346)
                      .|..|.+..++...      ..-....+..|.+.|..++-+|-.+.++.++..   |    ..+.||.+...........
T Consensus        38 ~dNqVhll~~d~e~------s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~t  111 (370)
T KOG1007|consen   38 EDNQVHLLRLDSEG------SELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSST  111 (370)
T ss_pred             CcceeEEEEecCcc------chhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccch
Confidence            46778888776311      112223455678899999999998875555532   1    3467999876543311111


Q ss_pred             -----cccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCc-cceee----c--cc-eeEEEeCC--CCCcEEEE
Q 019059          162 -----KQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGK-TNSIE----H--AH-VRNVDYDT--KKKHLLVT  226 (346)
Q Consensus       162 -----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~----~--~~-v~~~~~~~--~~~~~l~~  226 (346)
                           .-...+...+.++.|.|++..+++-. |..|.+|++..... +..+.    .  .+ .++-+|+|  ++. .+++
T Consensus       112 lE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn-qv~t  189 (370)
T KOG1007|consen  112 LECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN-QVAT  189 (370)
T ss_pred             hhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc-eEEE
Confidence                 11123445889999999988887765 88999999997765 33222    1  12 88889998  343 4554


Q ss_pred             ecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccc
Q 019059          227 AADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSL  306 (346)
Q Consensus       227 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  306 (346)
                       ..|+++..||+|+.++....-..|...|..+.|+|+...+|++++.||.|+|||.+.                  ...+
T Consensus       190 -t~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~------------------tk~p  250 (370)
T KOG1007|consen  190 -TSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRK------------------TKFP  250 (370)
T ss_pred             -eCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccC------------------CCcc
Confidence             457899999999866545555579999999999999988999999999999999998                  4788


Q ss_pred             ccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059          307 LNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       307 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~  344 (346)
                      ++.+.+|..+|+++.|+|....++.++|.|..|.+|..
T Consensus       251 v~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca  288 (370)
T KOG1007|consen  251 VQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCA  288 (370)
T ss_pred             ccccCCCceEEEEEEecCccceEEEecCCCceeEEEec
Confidence            99999999999999999976669999999999999864

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=1.2e-20  Score=145.88  Aligned_cols=257  Identities=18%  Similarity=0.261  Sum_probs=187.6

Q ss_pred             EeeeccCCCCcceEEEeecccCCCCeEEEEEecC-CCCeEEEeeeeccccceEEeeec-CCCCceEEEEeecCCcceEEE
Q 019059           18 CISDVKADTDHTSFLTGTLSLKEENEVHLLRLSS-GGTELICEGLFSHPNEIWDLSSC-PFDQRIFSTVFSTGESYGAAI   95 (346)
Q Consensus        18 ~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~~~~~~~~~d~~i~v   95 (346)
                      -+.++.++..+.|++.+    ..++.+.+|++.+ .++.-.......|.+.|..+.|. |.-..+++++   +.|+++.|
T Consensus        15 lihdVs~D~~GRRmAtC----SsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~c---S~Drtv~i   87 (361)
T KOG2445|consen   15 LIHDVSFDFYGRRMATC----SSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATC---SYDRTVSI   87 (361)
T ss_pred             eeeeeeecccCceeeec----cCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEE---ecCCceee
Confidence            46677888899999887    4688999999654 44555556778899999999994 5555555553   79999999


Q ss_pred             EecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEE-ecCCeEEEEEcCCCCCCce--------eeecccCC
Q 019059           96 WQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS-IDEENIFLWSLDCSNKNAQ--------VQSKQSSG  166 (346)
Q Consensus        96 w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~d~~i~vwd~~~~~~~~~--------~~~~~~~~  166 (346)
                      |.-.....+..........++....+.|+.++|.|....+.+++ +.||.++||+.-.......        ........
T Consensus        88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~  167 (361)
T KOG2445|consen   88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK  167 (361)
T ss_pred             eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc
Confidence            98643233333345667778888889999999999877766666 7799999999764322111        11112234


Q ss_pred             CceeeEEEEeCCCC---CcEEEEecC-----CeEEEEEccCCC----ccceeeccc---eeEEEeCCCCC---cEEEEec
Q 019059          167 MLHYLSGGAWDPHD---VNAVAATCE-----SSVQFWDLRSMG----KTNSIEHAH---VRNVDYDTKKK---HLLVTAA  228 (346)
Q Consensus       167 ~~~~v~~~~~~~~~---~~l~~~~~d-----~~i~i~d~~~~~----~~~~~~~~~---v~~~~~~~~~~---~~l~~~~  228 (346)
                      +..+..++.|+|..   +.|++++.+     +.+.||......    .+.++. ++   |++|+|.|+-.   +++++++
T Consensus       168 ~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~-d~~dpI~di~wAPn~Gr~y~~lAvA~  246 (361)
T KOG2445|consen  168 NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP-DHTDPIRDISWAPNIGRSYHLLAVAT  246 (361)
T ss_pred             ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcC-CCCCcceeeeeccccCCceeeEEEee
Confidence            55678999999742   456666644     478888766443    223333 44   99999999742   3799999


Q ss_pred             CCCeEEEEEcccCC-------------------cceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          229 DESGIHLWDLRMLK-------------------APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       229 ~dg~i~i~d~~~~~-------------------~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      .|| |+||.++...                   ..+..+..|...|..+.|+-.| ..|++.|.||.||+|....
T Consensus       247 kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG-tiLsStGdDG~VRLWkany  319 (361)
T KOG2445|consen  247 KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG-TILSSTGDDGCVRLWKANY  319 (361)
T ss_pred             cCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee-eEEeecCCCceeeehhhhh
Confidence            999 9999987311                   1344567899999999999999 9999999999999998765

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.90  E-value=2.1e-21  Score=155.12  Aligned_cols=292  Identities=17%  Similarity=0.248  Sum_probs=209.0

Q ss_pred             eEeeeccCCCCcc-eEEEeecccCCCCeEEEEEecCC---C---CeEEEeeeeccccceEEeeecCCCCceEEEEeecCC
Q 019059           17 RCISDVKADTDHT-SFLTGTLSLKEENEVHLLRLSSG---G---TELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGE   89 (346)
Q Consensus        17 ~~~~~~~~~~~~~-~~~~g~~~~~~~~~i~~~~~~~~---~---~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~   89 (346)
                      .++..+.+..+.. +++.|    +.+..|++|.+...   +   .......+..|...|+++.|+|+|..|++    |+.
T Consensus        14 ~pv~s~dfq~n~~~~laT~----G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLAS----g~D   85 (434)
T KOG1009|consen   14 EPVYSVDFQKNSLNKLATA----GGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLAS----GGD   85 (434)
T ss_pred             CceEEEEeccCcccceecc----cCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeee----cCC
Confidence            3555566655555 66665    46788999988643   2   22334667889999999999999988887    479


Q ss_pred             cceEEEEecCcc-------cCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeec
Q 019059           90 SYGAAIWQIPEL-------YGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK  162 (346)
Q Consensus        90 d~~i~vw~~~~~-------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~  162 (346)
                      ++.|.+|.....       ......+.+...+.+.+|...|..++|+|++.. +++++-|+.+++||+..+......   
T Consensus        86 ~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~-l~s~s~dns~~l~Dv~~G~l~~~~---  161 (434)
T KOG1009|consen   86 GGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNF-LVSGSVDNSVRLWDVHAGQLLAIL---  161 (434)
T ss_pred             CceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCce-eeeeeccceEEEEEeccceeEeec---
Confidence            999999986621       112223346677788899999999999999994 667778999999999977543322   


Q ss_pred             ccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceee--------------------ccc-----eeEEEeC
Q 019059          163 QSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE--------------------HAH-----VRNVDYD  217 (346)
Q Consensus       163 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--------------------~~~-----v~~~~~~  217 (346)
                        .+|...+..++|.|.++++++-+.|...+.+++...+......                    ...     ...++|+
T Consensus       162 --~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfT  239 (434)
T KOG1009|consen  162 --DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFT  239 (434)
T ss_pred             --cccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccC
Confidence              3466799999999999999998888877666655433221111                    011     6678999


Q ss_pred             CCCCcEEEEecC----C-----CeEEEEEcccCCcceeeecCCCcceEEEEeCC------------------CCCcEEEE
Q 019059          218 TKKKHLLVTAAD----E-----SGIHLWDLRMLKAPIQELPGHTHWTWAVCCNP------------------EYDGFILS  270 (346)
Q Consensus       218 ~~~~~~l~~~~~----d-----g~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~------------------~~~~~l~s  270 (346)
                      |+|. ++++...    .     ...++|+-...++|+..+.....+...+.|+|                  .+ ..+|.
T Consensus       240 PdG~-llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyr-lvfai  317 (434)
T KOG1009|consen  240 PDGS-LLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYR-LVFAI  317 (434)
T ss_pred             CCCc-EEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccc-eEEEE
Confidence            9998 7776432    1     24467776665667777776667777777665                  22 34555


Q ss_pred             ecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccc-ccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          271 AGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSY-SDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       271 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      ++. +.|.|||.++                   ..++... .-|-..|++++|+++|. .|+..|.||...+-.++
T Consensus       318 At~-~svyvydtq~-------------------~~P~~~v~nihy~~iTDiaws~dg~-~l~vSS~DGyCS~vtfe  372 (434)
T KOG1009|consen  318 ATK-NSVYVYDTQT-------------------LEPLAVVDNIHYSAITDIAWSDDGS-VLLVSSTDGFCSLVTFE  372 (434)
T ss_pred             eec-ceEEEecccc-------------------ccceEEEeeeeeeeecceeecCCCc-EEEEeccCCceEEEEEc
Confidence            554 5799999998                   5665554 34888999999999997 88888999987776554

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.89  E-value=9.6e-20  Score=154.23  Aligned_cols=277  Identities=14%  Similarity=0.184  Sum_probs=176.9

Q ss_pred             CCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeec
Q 019059           39 KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA  118 (346)
Q Consensus        39 ~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~  118 (346)
                      ..++.|.+|++...+ .+.......+.+....++++|++++|+++.   ..++.|.+|+++.      ......+.... 
T Consensus         9 ~~~~~I~~~~~~~~g-~l~~~~~~~~~~~~~~l~~spd~~~lyv~~---~~~~~i~~~~~~~------~g~l~~~~~~~-   77 (330)
T PRK11028          9 PESQQIHVWNLNHEG-ALTLLQVVDVPGQVQPMVISPDKRHLYVGV---RPEFRVLSYRIAD------DGALTFAAESP-   77 (330)
T ss_pred             CCCCCEEEEEECCCC-ceeeeeEEecCCCCccEEECCCCCEEEEEE---CCCCcEEEEEECC------CCceEEeeeec-
Confidence            456889999996433 333333334556788899999999888763   4578899999862      01122233322 


Q ss_pred             cCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEe-cCCeEEEEEc
Q 019059          119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT-CESSVQFWDL  197 (346)
Q Consensus       119 ~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~  197 (346)
                      .......+.++|+++.++++...++.|.+|++++........... . .......++++|++++++++. .++.|.+||+
T Consensus        78 ~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~  155 (330)
T PRK11028         78 LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-E-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTL  155 (330)
T ss_pred             CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-c-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEE
Confidence            233567899999999655554558999999997543222211110 1 112467788999999987766 4699999999


Q ss_pred             cCCCccc-------eeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCC---cceeeecCC------CcceEEEEe
Q 019059          198 RSMGKTN-------SIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK---APIQELPGH------THWTWAVCC  260 (346)
Q Consensus       198 ~~~~~~~-------~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~------~~~v~~v~~  260 (346)
                      .+...+.       ....+. +..++|+|++++++++...++.|.+||+....   ..+..+..+      ......+.+
T Consensus       156 ~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~  235 (330)
T PRK11028        156 SDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHI  235 (330)
T ss_pred             CCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEE
Confidence            8643221       112233 78999999999444444448999999997421   122232211      122346889


Q ss_pred             CCCCCcEEEEecC-CCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeE
Q 019059          261 NPEYDGFILSAGT-DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRV  339 (346)
Q Consensus       261 ~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v  339 (346)
                      +|++ ++++++.. ++.|.+|++.....               ..+.+..... ......+.++|+|++++++...+++|
T Consensus       236 ~pdg-~~lyv~~~~~~~I~v~~i~~~~~---------------~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v  298 (330)
T PRK11028        236 TPDG-RHLYACDRTASLISVFSVSEDGS---------------VLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHI  298 (330)
T ss_pred             CCCC-CEEEEecCCCCeEEEEEEeCCCC---------------eEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcE
Confidence            9999 87877754 78999999975100               0111121111 12356799999998666666669999


Q ss_pred             EEeeec
Q 019059          340 RNHMLE  345 (346)
Q Consensus       340 ~vw~~~  345 (346)
                      .+|+++
T Consensus       299 ~v~~~~  304 (330)
T PRK11028        299 SVYEID  304 (330)
T ss_pred             EEEEEc
Confidence            999874

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.89  E-value=6.8e-21  Score=165.28  Aligned_cols=227  Identities=19%  Similarity=0.245  Sum_probs=175.9

Q ss_pred             ceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCC-ceeeecccCCCce
Q 019059           91 YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKN-AQVQSKQSSGMLH  169 (346)
Q Consensus        91 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~  169 (346)
                      +.+.||++..        +..+...+ .....|.+++|+|....+++.|..+|+|.+||+..+... ..........|..
T Consensus       222 ~~~~vW~~~~--------p~~Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~  292 (555)
T KOG1587|consen  222 GVLLVWSLKN--------PNTPELVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSE  292 (555)
T ss_pred             ceEEEEecCC--------CCCceEEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCc
Confidence            4789999983        24454455 446789999999999987888888999999999977653 2223333456788


Q ss_pred             eeEEEEeCCCCCc--EEEEecCCeEEEEEccCCCccc------ee-------eccc-eeEEEeCCCCCcEEEEecCCCeE
Q 019059          170 YLSGGAWDPHDVN--AVAATCESSVQFWDLRSMGKTN------SI-------EHAH-VRNVDYDTKKKHLLVTAADESGI  233 (346)
Q Consensus       170 ~v~~~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~------~~-------~~~~-v~~~~~~~~~~~~l~~~~~dg~i  233 (346)
                      ++..+.|..+...  +++++.||.|..|+++.-....      ..       .... +++++|.+..++.+++|+++|.|
T Consensus       293 ~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v  372 (555)
T KOG1587|consen  293 PVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKV  372 (555)
T ss_pred             CeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEE
Confidence            9999999776555  9999999999999987543211      11       1112 99999999999899999999998


Q ss_pred             EEEEcccCC-------cceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccc
Q 019059          234 HLWDLRMLK-------APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSL  306 (346)
Q Consensus       234 ~i~d~~~~~-------~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  306 (346)
                      .--+.....       +....+..|.++|+++.++|-++..|.+++ |.+++||....                  ...+
T Consensus       373 ~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~------------------~~~P  433 (555)
T KOG1587|consen  373 YKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDV------------------IASP  433 (555)
T ss_pred             EEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccC------------------CCCc
Confidence            774322211       124456678899999999999966777777 99999999883                  1677


Q ss_pred             ccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          307 LNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       307 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      +..+..+...|++++|||..+.+|+++..||.+.+|||.
T Consensus       434 l~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl  472 (555)
T KOG1587|consen  434 LLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLL  472 (555)
T ss_pred             chhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhh
Confidence            888888888899999999988899999999999999984

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.89  E-value=5e-21  Score=161.22  Aligned_cols=259  Identities=15%  Similarity=0.192  Sum_probs=183.5

Q ss_pred             eeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEE
Q 019059           16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAI   95 (346)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~v   95 (346)
                      -.++-++.+-+...+|+.    ...+..+++|++.... ..-.....+|.+.|.+++|.|.++.++++   ||.|+.|.|
T Consensus       100 ~nAifDl~wapge~~lVs----asGDsT~r~Wdvk~s~-l~G~~~~~GH~~SvkS~cf~~~n~~vF~t---GgRDg~ill  171 (720)
T KOG0321|consen  100 KNAIFDLKWAPGESLLVS----ASGDSTIRPWDVKTSR-LVGGRLNLGHTGSVKSECFMPTNPAVFCT---GGRDGEILL  171 (720)
T ss_pred             cceeEeeccCCCceeEEE----ccCCceeeeeeeccce-eecceeecccccccchhhhccCCCcceee---ccCCCcEEE
Confidence            345666666664444443    2467789999988753 12223578999999999999999999988   799999999


Q ss_pred             EecCcccC---------------C---CCCccceeeeeeeccCCceEE---EEeecCCCCcEEEE-ecCCeEEEEEcCCC
Q 019059           96 WQIPELYG---------------Q---LNSPQLERIAALDAHVGKINC---VLWWSSGRHDKLVS-IDEENIFLWSLDCS  153 (346)
Q Consensus        96 w~~~~~~~---------------~---~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~~~~~~~-~~d~~i~vwd~~~~  153 (346)
                      ||+.....               .   ...+..+.+.....+...|..   +.+..|... ++++ ..|+.|+|||+++.
T Consensus       172 WD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~t-laSaga~D~~iKVWDLRk~  250 (720)
T KOG0321|consen  172 WDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDEST-LASAGAADSTIKVWDLRKN  250 (720)
T ss_pred             EEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccce-eeeccCCCcceEEEeeccc
Confidence            99974321               1   111111222233455555665   556666664 5554 44999999999976


Q ss_pred             CCCceeeecc------cCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCc--cceeeccc-----eeEEEeCCCC
Q 019059          154 NKNAQVQSKQ------SSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGK--TNSIEHAH-----VRNVDYDTKK  220 (346)
Q Consensus       154 ~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~-----v~~~~~~~~~  220 (346)
                      ..........      .......+.++.....|.+|++.+.|+.|++|++.+...  +..+. ++     -..-..+|++
T Consensus       251 ~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~s-g~~~~sf~vks~lSpd~  329 (720)
T KOG0321|consen  251 YTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFS-GKLNSSFYVKSELSPDD  329 (720)
T ss_pred             ccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhcc-CcccceeeeeeecCCCC
Confidence            5433322211      111133567777777889999999999999999986542  22222 22     2223457899


Q ss_pred             CcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCC
Q 019059          221 KHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTS  285 (346)
Q Consensus       221 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~  285 (346)
                      . .+++|+.|...++|.+.+...+...+.+|...|++++|.|..-.-++++++|..++||++...
T Consensus       330 ~-~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  330 C-SLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             c-eEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence            8 899999999999999999888888999999999999999876566888899999999999653

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=8.5e-22  Score=157.05  Aligned_cols=277  Identities=13%  Similarity=0.135  Sum_probs=194.7

Q ss_pred             CeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeee-ccCCceEEEEeecCC
Q 019059           54 TELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD-AHVGKINCVLWWSSG  132 (346)
Q Consensus        54 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~  132 (346)
                      .++..+.+.+|.+.|+++.|+.+++.|++    ||.|..++||+++......   ..+++.... .|.+.|.|++|...+
T Consensus        45 R~~~qKD~~~H~GCiNAlqFS~N~~~L~S----GGDD~~~~~W~~de~~~~k---~~KPI~~~~~~H~SNIF~L~F~~~N  117 (609)
T KOG4227|consen   45 RPFCQKDVREHTGCINALQFSHNDRFLAS----GGDDMHGRVWNVDELMVRK---TPKPIGVMEHPHRSNIFSLEFDLEN  117 (609)
T ss_pred             cchhhhhhhhhccccceeeeccCCeEEee----cCCcceeeeechHHHHhhc---CCCCceeccCccccceEEEEEccCC
Confidence            34455678899999999999999888887    5899999999997432111   224443332 356899999999877


Q ss_pred             CCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCC-ccceeeccc-
Q 019059          133 RHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG-KTNSIEHAH-  210 (346)
Q Consensus       133 ~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~-  210 (346)
                      + .+++++.+++|...|+++.+......   .......|+.+..+|..+.+++.+.++.|.+||.+..+ ....+..+. 
T Consensus       118 ~-~~~SG~~~~~VI~HDiEt~qsi~V~~---~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~  193 (609)
T KOG4227|consen  118 R-FLYSGERWGTVIKHDIETKQSIYVAN---ENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANS  193 (609)
T ss_pred             e-eEecCCCcceeEeeecccceeeeeec---ccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCC
Confidence            7 47778889999999999765433322   22334489999999999999999999999999999766 333222222 


Q ss_pred             ---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeec--------------------------------------
Q 019059          211 ---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP--------------------------------------  249 (346)
Q Consensus       211 ---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------------------------------------  249 (346)
                         ...+.|+|..+.+|++.+..+-+.+||.|....++....                                      
T Consensus       194 ~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~  273 (609)
T KOG4227|consen  194 GKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDF  273 (609)
T ss_pred             CccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeee
Confidence               889999999998999999999999999986542221110                                      


Q ss_pred             ----------CCC-------cceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCC--Cccc-ccCCc-ccccccccc
Q 019059          250 ----------GHT-------HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDEL--PSES-LVESP-NQRANSLLN  308 (346)
Q Consensus       250 ----------~~~-------~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~--~~~~-~~~~~-~~~~~~~~~  308 (346)
                                .|.       ..+.+++|..+  .-+++|+.+-.|++|.+......--  .... ....+ .....+.+.
T Consensus       274 ~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D--~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~  351 (609)
T KOG4227|consen  274 ISQRCFVLKSDHNPNGYCNIKTIKSMTFIDD--YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELT  351 (609)
T ss_pred             ecccceeEeccCCCCcceeeeeeeeeeeecc--eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeE
Confidence                      011       11233444433  3588999999999998875321100  0000 00001 011234566


Q ss_pred             ccccccceeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059          309 SYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       309 ~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~  344 (346)
                      .+.+|.+.+..+.|+|... +|++.+-+..+++|.-
T Consensus       352 VLrGHRSv~NQVRF~~H~~-~l~SSGVE~~~KlWS~  386 (609)
T KOG4227|consen  352 VLRGHRSVPNQVRFSQHNN-LLVSSGVENSFKLWSD  386 (609)
T ss_pred             EEecccccccceeecCCcc-eEeccchhhheecccc
Confidence            7889999999999999885 9999999999999974

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.89  E-value=2.2e-20  Score=162.19  Aligned_cols=275  Identities=15%  Similarity=0.222  Sum_probs=197.0

Q ss_pred             eEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCc
Q 019059           43 EVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGK  122 (346)
Q Consensus        43 ~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (346)
                      .+++|++.+...   ......-+.+|.++.|+|..+.++++   |..+|.|.+||+.....   .+..........|..+
T Consensus       223 ~~~vW~~~~p~~---Pe~~~~~~s~v~~~~f~p~~p~ll~g---G~y~GqV~lWD~~~~~~---~~~s~ls~~~~sh~~~  293 (555)
T KOG1587|consen  223 VLLVWSLKNPNT---PELVLESPSEVTCLKFCPFDPNLLAG---GCYNGQVVLWDLRKGSD---TPPSGLSALEVSHSEP  293 (555)
T ss_pred             eEEEEecCCCCC---ceEEEecCCceeEEEeccCCcceEEe---eccCceEEEEEccCCCC---CCCcccccccccCCcC
Confidence            678888877632   23344567899999999999999997   68899999999983211   1111112233468899


Q ss_pred             eEEEEeecCCCC-cEEEEecCCeEEEEEcCCCCCCceeeecccC-------CCceeeEEEEeCCCCC-cEEEEecCCeEE
Q 019059          123 INCVLWWSSGRH-DKLVSIDEENIFLWSLDCSNKNAQVQSKQSS-------GMLHYLSGGAWDPHDV-NAVAATCESSVQ  193 (346)
Q Consensus       123 i~~~~~~~~~~~-~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~-~l~~~~~d~~i~  193 (346)
                      +..+.|..+-.. -+++++.||.|..|+++.-..+.........       .....++.++|.+... .+++|+.+|.|.
T Consensus       294 v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~  373 (555)
T KOG1587|consen  294 VTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVY  373 (555)
T ss_pred             eEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEE
Confidence            999999754321 2677777999999998754332222221111       1223678899988654 467777889888


Q ss_pred             EEEccCCCccc----e---eeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCC
Q 019059          194 FWDLRSMGKTN----S---IEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPE  263 (346)
Q Consensus       194 i~d~~~~~~~~----~---~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~  263 (346)
                      .-+....+.-.    .   ....|   |+++.++|.+..++++++ |.+++||.......|+..+..+...+++++|||.
T Consensus       374 ~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSpt  452 (555)
T KOG1587|consen  374 KGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPT  452 (555)
T ss_pred             EEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCc
Confidence            74444322211    1   11122   999999999985666665 8999999988446688888888888999999999


Q ss_pred             CCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEee
Q 019059          264 YDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHM  343 (346)
Q Consensus       264 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~  343 (346)
                      .+..|+++..||.|.|||+..                 ....++....-+....+.+.|++.|+ +|+.|...|++.+|+
T Consensus       453 rpavF~~~d~~G~l~iWDLl~-----------------~~~~Pv~s~~~~~~~l~~~~~s~~g~-~lavGd~~G~~~~~~  514 (555)
T KOG1587|consen  453 RPAVFATVDGDGNLDIWDLLQ-----------------DDEEPVLSQKVCSPALTRVRWSPNGK-LLAVGDANGTTHILK  514 (555)
T ss_pred             CceEEEEEcCCCceehhhhhc-----------------cccCCcccccccccccceeecCCCCc-EEEEecCCCcEEEEE
Confidence            989999999999999999986                 12344444444456678889999897 999999999999999


Q ss_pred             ec
Q 019059          344 LE  345 (346)
Q Consensus       344 ~~  345 (346)
                      +.
T Consensus       515 l~  516 (555)
T KOG1587|consen  515 LS  516 (555)
T ss_pred             cC
Confidence            84

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=5.2e-22  Score=164.85  Aligned_cols=257  Identities=20%  Similarity=0.238  Sum_probs=196.0

Q ss_pred             eeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEE
Q 019059           60 GLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS  139 (346)
Q Consensus        60 ~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  139 (346)
                      ++..|.+.|.+++|.|..+.++++    +.|+++++|++.. .........+++.++++|.++|.|+++.+.+.+ .+++
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~----sed~~lk~WnLqk-~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~-~ysg  362 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITA----SEDGTLKLWNLQK-AKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEH-CYSG  362 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEe----ccccchhhhhhcc-cCCccccceeeeEEEecccCceEEEEecCCceE-EEee
Confidence            667899999999999999999886    7999999999953 223334467899999999999999999999996 8888


Q ss_pred             ecCCeEEEEEcCCCCCC-----ceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceee--ccc--
Q 019059          140 IDEENIFLWSLDCSNKN-----AQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE--HAH--  210 (346)
Q Consensus       140 ~~d~~i~vwd~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~--  210 (346)
                      +.||.|+.|++......     .........||...+..+++++....|++++.||+++.|+.....+ .++.  ..+  
T Consensus       363 g~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~  441 (577)
T KOG0642|consen  363 GIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGY  441 (577)
T ss_pred             ccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCC
Confidence            89999999977632211     1223344578899999999999999999999999999999887666 2222  122  


Q ss_pred             eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecC-------CCcceEEEEeCCCCCcEEEEecCCCeEEEEecC
Q 019059          211 VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG-------HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVS  283 (346)
Q Consensus       211 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~  283 (346)
                      ..++++-....-..++...-+.-.++++.. ...+..+..       -...+..+.++|.+ .+.+++..|+.|+++|..
T Consensus       442 Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev-~s~~~~~~s~~~~~~~~~~~in~vVs~~~~-~~~~~~hed~~Ir~~dn~  519 (577)
T KOG0642|consen  442 PLSVDRTSSRPAHSLASFRFGYTSIDDMEV-VSDLLIFESSASPGPRRYPQINKVVSHPTA-DITFTAHEDRSIRFFDNK  519 (577)
T ss_pred             cceEeeccchhHhhhhhcccccccchhhhh-hhheeeccccCCCcccccCccceEEecCCC-CeeEecccCCceeccccc
Confidence            777777655431222222223333333332 112222221       12346778899999 899999999999999999


Q ss_pred             CCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          284 TSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      +                   +.+++....|...++++++.|+|. +|++++.|+.+++|.++
T Consensus       520 ~-------------------~~~l~s~~a~~~svtslai~~ng~-~l~s~s~d~sv~l~kld  561 (577)
T KOG0642|consen  520 T-------------------GKILHSMVAHKDSVTSLAIDPNGP-YLMSGSHDGSVRLWKLD  561 (577)
T ss_pred             c-------------------cccchheeeccceecceeecCCCc-eEEeecCCceeehhhcc
Confidence            9                   899999999999999999999998 89999999999999874

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.89  E-value=1.2e-21  Score=167.21  Aligned_cols=245  Identities=13%  Similarity=0.192  Sum_probs=194.1

Q ss_pred             eeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCC--CCceEEEEeecCCcceEEEE
Q 019059           19 ISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPF--DQRIFSTVFSTGESYGAAIW   96 (346)
Q Consensus        19 ~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~~~~~~~d~~i~vw   96 (346)
                      +.++..+|+++.++.|.    ..+.++++++.....   ...+..|..+|.|+.|+..  +..|++.   ++.|+.|+|+
T Consensus       462 ~R~~~vSp~gqhLAsGD----r~GnlrVy~Lq~l~~---~~~~eAHesEilcLeyS~p~~~~kLLAS---asrdRlIHV~  531 (1080)
T KOG1408|consen  462 FRALAVSPDGQHLASGD----RGGNLRVYDLQELEY---TCFMEAHESEILCLEYSFPVLTNKLLAS---ASRDRLIHVY  531 (1080)
T ss_pred             eEEEEECCCcceecccC----ccCceEEEEehhhhh---hhheecccceeEEEeecCchhhhHhhhh---ccCCceEEEE
Confidence            34566788888888874    457889998887542   2445689999999999852  3445554   4899999999


Q ss_pred             ecCcccCCCCCccceeeeeeeccCCceEEEEeecCC-CCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEE
Q 019059           97 QIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSG-RHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGA  175 (346)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~  175 (346)
                      |+..        +..++.++.+|...|+++.|...| +..+++++.|..|.+--..+......+...........++.++
T Consensus       532 Dv~r--------ny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~  603 (1080)
T KOG1408|consen  532 DVKR--------NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMA  603 (1080)
T ss_pred             eccc--------ccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEee
Confidence            9974        567888999999999999998776 2236777778776543333222122222222222344789999


Q ss_pred             eCCCCCcEEEEecCCeEEEEEccCCCccceeeccc-----eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecC
Q 019059          176 WDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-----VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG  250 (346)
Q Consensus       176 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-----v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  250 (346)
                      ..|..+++++++.|..|+|||+.+++..+.|+..+     .-.+...|.|. ++++.+.|+++.++|.-+ +.++.++.+
T Consensus       604 Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgi-Y~atScsdktl~~~Df~s-gEcvA~m~G  681 (1080)
T KOG1408|consen  604 VDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGI-YLATSCSDKTLCFVDFVS-GECVAQMTG  681 (1080)
T ss_pred             eCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCcc-EEEEeecCCceEEEEecc-chhhhhhcC
Confidence            99999999999999999999999999999998444     77888999998 899999999999999997 678999999


Q ss_pred             CCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          251 HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       251 ~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      |...|+.+.|.+|- +.|++.+.||.|.||.+..
T Consensus       682 HsE~VTG~kF~nDC-kHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  682 HSEAVTGVKFLNDC-KHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             cchheeeeeecccc-hhheeecCCceEEEEECch
Confidence            99999999999999 9999999999999998764

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.89  E-value=3.2e-21  Score=150.19  Aligned_cols=265  Identities=15%  Similarity=0.174  Sum_probs=191.0

Q ss_pred             CCeEEEEEecCCCC--eEEEeeeeccccceEEeeecCC----CCceEEEEeecCCcceEEEEecCcccCCCCCccceeee
Q 019059           41 ENEVHLLRLSSGGT--ELICEGLFSHPNEIWDLSSCPF----DQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIA  114 (346)
Q Consensus        41 ~~~i~~~~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~----~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~  114 (346)
                      .+.+.++....+..  .+....-..|+..-.-++|+=+    ++++++    +|.-|.|+|.|+.         +.+...
T Consensus        63 ~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~----~G~~GvIrVid~~---------~~~~~~  129 (385)
T KOG1034|consen   63 GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA----GGYLGVIRVIDVV---------SGQCSK  129 (385)
T ss_pred             CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe----ecceeEEEEEecc---------hhhhcc
Confidence            46677777776652  2221222246677778888643    334554    4789999999998         788888


Q ss_pred             eeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEE
Q 019059          115 ALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQF  194 (346)
Q Consensus       115 ~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  194 (346)
                      .+.+|...|+.+.+.|+..+++++++.|..|++|++++...  ........+|...|.++.|++++..+++++.|.+|.+
T Consensus       130 ~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~C--v~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~  207 (385)
T KOG1034|consen  130 NYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVC--VAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKL  207 (385)
T ss_pred             ceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeE--EEEecccccccCcEEEEEEcCCCCeeeccCCcceEEE
Confidence            99999999999999999999888899999999999997653  3445566789999999999999999999999999999


Q ss_pred             EEccCCCccceee---------------------------ccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcc
Q 019059          195 WDLRSMGKTNSIE---------------------------HAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAP  244 (346)
Q Consensus       195 ~d~~~~~~~~~~~---------------------------~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  244 (346)
                      |++...+....+.                           .-|   |-|+.|-  |+ ++++-+-++.|..|-..+....
T Consensus       208 W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd-~ilSkscenaI~~w~pgkl~e~  284 (385)
T KOG1034|consen  208 WRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GD-FILSKSCENAIVCWKPGKLEES  284 (385)
T ss_pred             EecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hh-heeecccCceEEEEecchhhhh
Confidence            9998433111110                           001   4444443  44 7788788889999987322222


Q ss_pred             -------------eeeecCCCcceEEE--EeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccc--c
Q 019059          245 -------------IQELPGHTHWTWAV--CCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSL--L  307 (346)
Q Consensus       245 -------------~~~~~~~~~~v~~v--~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~  307 (346)
                                   +.++.-....|.-+  +|.|.+ ..||.|...|.|.+||++.                   .++  .
T Consensus       285 ~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~-~~la~gnq~g~v~vwdL~~-------------------~ep~~~  344 (385)
T KOG1034|consen  285 IHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQ-KMLALGNQSGKVYVWDLDN-------------------NEPPKC  344 (385)
T ss_pred             hhccCCCccceeeeeEeccCccceEEEEEeecHHH-HHHhhccCCCcEEEEECCC-------------------CCCccC
Confidence                         12222223344444  456777 8999999999999999997                   222  1


Q ss_pred             cccc--cccceeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059          308 NSYS--DYEDSVYGLAWSSREPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       308 ~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~  344 (346)
                      .++.  .....|...+|+.++. +|+...+|++|--||-
T Consensus       345 ttl~~s~~~~tVRQ~sfS~dgs-~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  345 TTLTHSKSGSTVRQTSFSRDGS-ILVLVCDDGTVWRWDR  382 (385)
T ss_pred             ceEEeccccceeeeeeecccCc-EEEEEeCCCcEEEEEe
Confidence            1221  2235699999999997 8888999999999984

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.88  E-value=5.8e-21  Score=161.96  Aligned_cols=272  Identities=14%  Similarity=0.214  Sum_probs=207.6

Q ss_pred             eeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEE
Q 019059           16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAI   95 (346)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~v   95 (346)
                      ..++..+.+.|++..+++.     .++.+++++.++.+   ....+.+|.+.|.+++|+.+|+.+++    |+.|..|.+
T Consensus        12 ~hci~d~afkPDGsqL~lA-----Ag~rlliyD~ndG~---llqtLKgHKDtVycVAys~dGkrFAS----G~aDK~VI~   79 (1081)
T KOG1538|consen   12 EHCINDIAFKPDGTQLILA-----AGSRLLVYDTSDGT---LLQPLKGHKDTVYCVAYAKDGKRFAS----GSADKSVII   79 (1081)
T ss_pred             ccchheeEECCCCceEEEe-----cCCEEEEEeCCCcc---cccccccccceEEEEEEccCCceecc----CCCceeEEE
Confidence            3478888899999988875     46788888887754   34677899999999999999999888    589999999


Q ss_pred             EecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEE
Q 019059           96 WQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGA  175 (346)
Q Consensus        96 w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~  175 (346)
                      |+-.          .+-+..+ .|.+.|.|+.|+|-... +++++ =...-+|..+... ..+..      ....+.+.+
T Consensus        80 W~~k----------lEG~LkY-SH~D~IQCMsFNP~~h~-LasCs-LsdFglWS~~qK~-V~K~k------ss~R~~~Cs  139 (1081)
T KOG1538|consen   80 WTSK----------LEGILKY-SHNDAIQCMSFNPITHQ-LASCS-LSDFGLWSPEQKS-VSKHK------SSSRIICCS  139 (1081)
T ss_pred             eccc----------ccceeee-ccCCeeeEeecCchHHH-hhhcc-hhhccccChhhhh-HHhhh------hheeEEEee
Confidence            9854          3333334 79999999999999884 44443 3456678876322 11111      233789999


Q ss_pred             eCCCCCcEEEEecCCeEEEEEccCCCccceeec-cc----eeEEEeCCCCC----cEEEEecCCCeEEEEEcccCCccee
Q 019059          176 WDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH-AH----VRNVDYDTKKK----HLLVTAADESGIHLWDLRMLKAPIQ  246 (346)
Q Consensus       176 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~----v~~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~  246 (346)
                      |..||++++.|-.+|+|.+-+- ++++...+.. +.    |.+++|+|...    ..+++.....++.++.+.  ++.+.
T Consensus       140 WtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls--G~~Ig  216 (1081)
T KOG1538|consen  140 WTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS--GKQIG  216 (1081)
T ss_pred             ecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec--ceeec
Confidence            9999999999999999998754 4554444443 21    99999998743    256667777777777765  33343


Q ss_pred             eecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCC
Q 019059          247 ELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSRE  326 (346)
Q Consensus       247 ~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  326 (346)
                      .-+.-.-...|+.+.++| .++..|+.|+.+++|-..                    +-.+.++.....+|+.+...|++
T Consensus       217 k~r~L~FdP~CisYf~NG-Ey~LiGGsdk~L~~fTR~--------------------GvrLGTvg~~D~WIWtV~~~PNs  275 (1081)
T KOG1538|consen  217 KDRALNFDPCCISYFTNG-EYILLGGSDKQLSLFTRD--------------------GVRLGTVGEQDSWIWTVQAKPNS  275 (1081)
T ss_pred             ccccCCCCchhheeccCC-cEEEEccCCCceEEEeec--------------------CeEEeeccccceeEEEEEEccCC
Confidence            333344566889999999 999999999999999765                    57788888888999999999999


Q ss_pred             CcEEEEeecCCeEEEeee
Q 019059          327 PWIFASLSYDGRVRNHML  344 (346)
Q Consensus       327 ~~~l~s~~~d~~v~vw~~  344 (346)
                      + .++.|..||+|..|++
T Consensus       276 Q-~v~~GCqDGTiACyNl  292 (1081)
T KOG1538|consen  276 Q-YVVVGCQDGTIACYNL  292 (1081)
T ss_pred             c-eEEEEEccCeeehhhh
Confidence            8 8899999999998876

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.88  E-value=1e-20  Score=150.78  Aligned_cols=231  Identities=16%  Similarity=0.277  Sum_probs=177.6

Q ss_pred             CCCeEEEEEecCCCC-eEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeec
Q 019059           40 EENEVHLLRLSSGGT-ELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA  118 (346)
Q Consensus        40 ~~~~i~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~  118 (346)
                      ..+...++.+...++ ......+.+|.++|.+++|+|.+...+++   |++|.+|.||.+++...  ..+-.+++..+.+
T Consensus        55 gGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIAS---gSeD~~v~vW~IPe~~l--~~~ltepvv~L~g  129 (472)
T KOG0303|consen   55 GGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIAS---GSEDTKVMVWQIPENGL--TRDLTEPVVELYG  129 (472)
T ss_pred             CCcceeecccccccccCCCCCCccCccccccccccCccCCceeec---CCCCceEEEEECCCccc--ccCcccceEEEee
Confidence            344555555544321 11224567999999999999998888887   69999999999985432  2223477888999


Q ss_pred             cCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEcc
Q 019059          119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLR  198 (346)
Q Consensus       119 ~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~  198 (346)
                      |...|--+.|+|....++++++.|..|.+|++.+++....+.      |...|+++.|+.+|..+++++.|..|+|||.+
T Consensus       130 H~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~------hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr  203 (472)
T KOG0303|consen  130 HQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD------HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPR  203 (472)
T ss_pred             cceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC------CCCeEEEEEeccCCceeeeecccceeEEEcCC
Confidence            999999999999999888888889999999999887554432      67799999999999999999999999999999


Q ss_pred             CCCccceeeccc----eeEEEeCCCCCcEEEEec---CCCeEEEEEcccCCcceeeec-CCCcceEEEEeCCCCCcEEE-
Q 019059          199 SMGKTNSIEHAH----VRNVDYDTKKKHLLVTAA---DESGIHLWDLRMLKAPIQELP-GHTHWTWAVCCNPEYDGFIL-  269 (346)
Q Consensus       199 ~~~~~~~~~~~~----v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~v~~~~~~~~~l~-  269 (346)
                      +++.+..-. +|    ...+.|-.++. ++.+|-   .+..+-+||..+...++.... ...+.|.---|.|+. ..++ 
T Consensus       204 ~~~~v~e~~-~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt-~ivYl  280 (472)
T KOG0303|consen  204 RGTVVSEGV-AHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDT-SIVYL  280 (472)
T ss_pred             CCcEeeecc-cccCCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCC-CEEEE
Confidence            999877663 44    66677777886 555543   467899999888776643322 245667777788888 6665 


Q ss_pred             EecCCCeEEEEecCC
Q 019059          270 SAGTDSTVNLWLVST  284 (346)
Q Consensus       270 s~~~d~~i~iwd~~~  284 (346)
                      +|-.|+.||-|.+..
T Consensus       281 ~GKGD~~IRYyEit~  295 (472)
T KOG0303|consen  281 CGKGDSSIRYFEITN  295 (472)
T ss_pred             EecCCcceEEEEecC
Confidence            555699999999876

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.87  E-value=2.1e-20  Score=149.02  Aligned_cols=245  Identities=10%  Similarity=0.175  Sum_probs=175.9

Q ss_pred             CCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCC
Q 019059           76 FDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNK  155 (346)
Q Consensus        76 ~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~  155 (346)
                      -++.+++....++..|...|--+.+...     --...-.+.+|+++|..++|+|.+.+.++++++|.+|.||.+..+..
T Consensus        42 vNPkfiAvi~easgGgaf~ViPl~k~Gr-----~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l  116 (472)
T KOG0303|consen   42 VNPKFVAVIIEASGGGAFLVIPLVKTGR-----MDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGL  116 (472)
T ss_pred             cCCceEEEEEecCCCcceeecccccccc-----cCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCccc
Confidence            3445555544445555666655542110     01112245799999999999999998677779999999999987654


Q ss_pred             Cceee--ecccCCCceeeEEEEeCCCCCc-EEEEecCCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCC
Q 019059          156 NAQVQ--SKQSSGMLHYLSGGAWDPHDVN-AVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADES  231 (346)
Q Consensus       156 ~~~~~--~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg  231 (346)
                      ...+.  .....+|...|-.++|+|.... |++++.|.+|.+|++.+++.+.++.+.. |.++.|+.+|. ++++.+.|+
T Consensus       117 ~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs-~l~TtckDK  195 (472)
T KOG0303|consen  117 TRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGS-LLCTTCKDK  195 (472)
T ss_pred             ccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCc-eeeeecccc
Confidence            44333  3346789999999999997654 7778889999999999999888887444 99999999998 999999999


Q ss_pred             eEEEEEcccCCcceeeecCCCc-ceEEEEeCCCCCcEEEEec---CCCeEEEEecCCCCCCCCCcccccCCccccccccc
Q 019059          232 GIHLWDLRMLKAPIQELPGHTH-WTWAVCCNPEYDGFILSAG---TDSTVNLWLVSTSNHDELPSESLVESPNQRANSLL  307 (346)
Q Consensus       232 ~i~i~d~~~~~~~~~~~~~~~~-~v~~v~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (346)
                      .|+|||.|. +..+..-.+|.+ .-..+.|-.++ .++-||-   .+.++.+||......                +-..
T Consensus       196 kvRv~dpr~-~~~v~e~~~heG~k~~Raifl~~g-~i~tTGfsr~seRq~aLwdp~nl~e----------------P~~~  257 (472)
T KOG0303|consen  196 KVRVIDPRR-GTVVSEGVAHEGAKPARAIFLASG-KIFTTGFSRMSERQIALWDPNNLEE----------------PIAL  257 (472)
T ss_pred             eeEEEcCCC-CcEeeecccccCCCcceeEEeccC-ceeeeccccccccceeccCcccccC----------------ccee
Confidence            999999998 556776667764 33455677888 6444442   367899999876210                1112


Q ss_pred             cccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          308 NSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       308 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      ..+.. ++.|.---|.|+.+-+.+.|-.|+.||.|.++
T Consensus       258 ~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit  294 (472)
T KOG0303|consen  258 QELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEIT  294 (472)
T ss_pred             EEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEec
Confidence            23333 33466566888887556677789999999875

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.86  E-value=1.2e-20  Score=142.85  Aligned_cols=246  Identities=15%  Similarity=0.150  Sum_probs=177.5

Q ss_pred             eeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeee-ccCCceEEEEeecCCCCcEEEE
Q 019059           61 LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD-AHVGKINCVLWWSSGRHDKLVS  139 (346)
Q Consensus        61 ~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~  139 (346)
                      +.+|.+.|+++.|..+++ |++    |...|.|.+|++.         ....+..++ .+...|+.+.-.|++.  +.+-
T Consensus        10 LRp~~~~v~s~~fqa~~r-L~s----g~~~G~V~~w~lq---------t~r~~~~~r~~g~~~it~lq~~p~d~--l~tq   73 (323)
T KOG0322|consen   10 LRPHSSSVTSVLFQANER-LMS----GLSVGIVKMWVLQ---------TERDLPLIRLFGRLFITNLQSIPNDS--LDTQ   73 (323)
T ss_pred             eccccchheehhhccchh-hhc----ccccceEEEEEee---------cCccchhhhhhccceeeceeecCCcc--hhhc
Confidence            348999999999998765 666    4688999999998         455555666 5677899999888866  6666


Q ss_pred             ecCCeEEEEEcCCCCCC--------------cee----------ee------------------------cccCCCceee
Q 019059          140 IDEENIFLWSLDCSNKN--------------AQV----------QS------------------------KQSSGMLHYL  171 (346)
Q Consensus       140 ~~d~~i~vwd~~~~~~~--------------~~~----------~~------------------------~~~~~~~~~v  171 (346)
                      +.|..+.+|++.-+...              ..+          ..                        ....+....+
T Consensus        74 gRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsv  153 (323)
T KOG0322|consen   74 GRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSV  153 (323)
T ss_pred             CCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCce
Confidence            88999999998752100              000          00                        0000111233


Q ss_pred             EEEEeCC-CCC-c-EEEEecCCeEEEEEccCCCccceeec---------cc---eeEEEeCCCCCcEEEEecCCCeEEEE
Q 019059          172 SGGAWDP-HDV-N-AVAATCESSVQFWDLRSMGKTNSIEH---------AH---VRNVDYDTKKKHLLVTAADESGIHLW  236 (346)
Q Consensus       172 ~~~~~~~-~~~-~-l~~~~~d~~i~i~d~~~~~~~~~~~~---------~~---v~~~~~~~~~~~~l~~~~~dg~i~i~  236 (346)
                      .+..+.- ++. . +++|-.+|.+.+||+.++.....++.         .|   +.++.+.+.-. .=++|+.+..+..|
T Consensus       154 mc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~-rGisgga~dkl~~~  232 (323)
T KOG0322|consen  154 MCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCD-RGISGGADDKLVMY  232 (323)
T ss_pred             eeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhc-CCcCCCccccceee
Confidence            4433321 222 2 44555799999999999754433321         22   88999987655 45667777788899


Q ss_pred             EcccCCc--ce-eeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccc
Q 019059          237 DLRMLKA--PI-QELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDY  313 (346)
Q Consensus       237 d~~~~~~--~~-~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (346)
                      .+.....  ++ ..+....-.|..+..-||+ +.+|+++.|+.||||..++                   ..++..++-|
T Consensus       233 Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~-KIlATAGWD~RiRVyswrt-------------------l~pLAVLkyH  292 (323)
T KOG0322|consen  233 SLNHSTGSLQIRKEITLKNPGVSGVRIRPDG-KILATAGWDHRIRVYSWRT-------------------LNPLAVLKYH  292 (323)
T ss_pred             eeccccCcccccceEEecCCCccceEEccCC-cEEeecccCCcEEEEEecc-------------------CCchhhhhhh
Confidence            8875321  11 1222234578889999999 9999999999999999999                   8999999999


Q ss_pred             cceeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059          314 EDSVYGLAWSSREPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       314 ~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~  344 (346)
                      +..|.+++|+|+.+ ++|+++.|++|.+|++
T Consensus       293 sagvn~vAfspd~~-lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  293 SAGVNAVAFSPDCE-LMAAASKDARISLWKL  322 (323)
T ss_pred             hcceeEEEeCCCCc-hhhhccCCceEEeeec
Confidence            99999999999976 9999999999999997

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.86  E-value=2.9e-20  Score=144.93  Aligned_cols=224  Identities=14%  Similarity=0.256  Sum_probs=161.5

Q ss_pred             CCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeee---e
Q 019059           41 ENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL---D  117 (346)
Q Consensus        41 ~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~---~  117 (346)
                      -|.|+++++...   .....+.+|...|+.+.+.|+...|+.+   ++.|..|++|++.         +..++..+   .
T Consensus       114 ~GvIrVid~~~~---~~~~~~~ghG~sINeik~~p~~~qlvls---~SkD~svRlwnI~---------~~~Cv~VfGG~e  178 (385)
T KOG1034|consen  114 LGVIRVIDVVSG---QCSKNYRGHGGSINEIKFHPDRPQLVLS---ASKDHSVRLWNIQ---------TDVCVAVFGGVE  178 (385)
T ss_pred             eeEEEEEecchh---hhccceeccCccchhhhcCCCCCcEEEE---ecCCceEEEEecc---------CCeEEEEecccc
Confidence            345666655543   3557788999999999999999888887   4899999999999         66777665   6


Q ss_pred             ccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeee-----------------------cccCCCceeeEEE
Q 019059          118 AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQS-----------------------KQSSGMLHYLSGG  174 (346)
Q Consensus       118 ~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~-----------------------~~~~~~~~~v~~~  174 (346)
                      +|.+.|.+++|+++|.+ ++++|.|.++++|++...+-...+..                       ....-|...|-++
T Consensus       179 gHrdeVLSvD~~~~gd~-i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCv  257 (385)
T KOG1034|consen  179 GHRDEVLSVDFSLDGDR-IASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCV  257 (385)
T ss_pred             cccCcEEEEEEcCCCCe-eeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHH
Confidence            79999999999999995 77778899999999984321111000                       0112355566667


Q ss_pred             EeCCCCCcEEEEecCCeEEEEEc-cCCCcccee-------------eccc--ee--EEEeCCCCCcEEEEecCCCeEEEE
Q 019059          175 AWDPHDVNAVAATCESSVQFWDL-RSMGKTNSI-------------EHAH--VR--NVDYDTKKKHLLVTAADESGIHLW  236 (346)
Q Consensus       175 ~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~-------------~~~~--v~--~~~~~~~~~~~l~~~~~dg~i~i~  236 (346)
                      .|-  |.++++-+.++.|..|.. +-++....+             .-..  +.  -.+|+|-.+ +|+.|...|.|.+|
T Consensus       258 rw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~-~la~gnq~g~v~vw  334 (385)
T KOG1034|consen  258 RWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK-MLALGNQSGKVYVW  334 (385)
T ss_pred             HHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHH-HHhhccCCCcEEEE
Confidence            774  578888888999999987 222221111             1111  33  345677777 89999999999999


Q ss_pred             EcccCCcc-eeeec--CCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          237 DLRMLKAP-IQELP--GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       237 d~~~~~~~-~~~~~--~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      |+++...+ ..++.  .....|...+|+.++ .+|+...+|++|.-||..+
T Consensus       335 dL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dg-s~lv~vcdd~~Vwrwdrv~  384 (385)
T KOG1034|consen  335 DLDNNEPPKCTTLTHSKSGSTVRQTSFSRDG-SILVLVCDDGTVWRWDRVS  384 (385)
T ss_pred             ECCCCCCccCceEEeccccceeeeeeecccC-cEEEEEeCCCcEEEEEeec
Confidence            99975432 22222  123578899999999 8999999999999998653

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=3.1e-19  Score=133.79  Aligned_cols=243  Identities=14%  Similarity=0.206  Sum_probs=172.1

Q ss_pred             cceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccc-eeeeeeeccCCceEEEEeecCCCCcEEEEecCCe
Q 019059           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQL-ERIAALDAHVGKINCVLWWSSGRHDKLVSIDEEN  144 (346)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~  144 (346)
                      ..|.+-+|+|.+++|+++    +.+|.|.+..+.........+++ .++...++|+++|+.++|..+   ++++++ ||.
T Consensus        11 ~tvf~qa~sp~~~~l~ag----n~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~---~Lls~g-dG~   82 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAG----NLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD---FLLSGG-DGL   82 (325)
T ss_pred             HHHHHHhhCCcceEEEEe----cCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh---heeecc-Cce
Confidence            346677899999998884    79999999999866544444444 345556899999999999833   355554 799


Q ss_pred             EEEEEcCCCCC------Cceeeeccc--CCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeE
Q 019059          145 IFLWSLDCSNK------NAQVQSKQS--SGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRN  213 (346)
Q Consensus       145 i~vwd~~~~~~------~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~  213 (346)
                      |+=|..+....      ..+...+..  ......|+++...|..+.++.++.|+.++-||+++|+..+++. +|   +.+
T Consensus        83 V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r-GHtDYvH~  161 (325)
T KOG0649|consen   83 VYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR-GHTDYVHS  161 (325)
T ss_pred             EEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc-CCcceeee
Confidence            99998764322      111111111  1123368899999999999999999999999999999888887 77   999


Q ss_pred             EEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecC---------C-CcceEEEEeCCCCCcEEEEecCCCeEEEEecC
Q 019059          214 VDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG---------H-THWTWAVCCNPEYDGFILSAGTDSTVNLWLVS  283 (346)
Q Consensus       214 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------~-~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~  283 (346)
                      ++--.... -+++|++||++|+||.++ .+.+..+..         | ..+|.+++-+.   .++++|+. ..+.+|.++
T Consensus       162 vv~R~~~~-qilsG~EDGtvRvWd~kt-~k~v~~ie~yk~~~~lRp~~g~wigala~~e---dWlvCGgG-p~lslwhLr  235 (325)
T KOG0649|consen  162 VVGRNANG-QILSGAEDGTVRVWDTKT-QKHVSMIEPYKNPNLLRPDWGKWIGALAVNE---DWLVCGGG-PKLSLWHLR  235 (325)
T ss_pred             eeecccCc-ceeecCCCccEEEEeccc-cceeEEeccccChhhcCcccCceeEEEeccC---ceEEecCC-CceeEEecc
Confidence            88844443 589999999999999998 445555542         1 23466666544   56776664 469999999


Q ss_pred             CCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeecC
Q 019059          284 TSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLEK  346 (346)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~~  346 (346)
                      .                   .++...+.- ...+..+.|..+   .+++++..+.|.-|.+.|
T Consensus       236 s-------------------se~t~vfpi-pa~v~~v~F~~d---~vl~~G~g~~v~~~~l~G  275 (325)
T KOG0649|consen  236 S-------------------SESTCVFPI-PARVHLVDFVDD---CVLIGGEGNHVQSYTLNG  275 (325)
T ss_pred             C-------------------CCceEEEec-ccceeEeeeecc---eEEEeccccceeeeeecc
Confidence            8                   555544432 334777888754   567778777888887654

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=9.5e-20  Score=151.58  Aligned_cols=258  Identities=14%  Similarity=0.194  Sum_probs=183.3

Q ss_pred             cccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecC-----CCCeEEEeeeeccccceEEeeecCCCCceEEEEe
Q 019059           11 GLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSS-----GGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVF   85 (346)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   85 (346)
                      .+..+..++..+.+.+....++.+    ..++.+.+|++..     .......-++.+|.++|.|+++.+++.++++   
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~----sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ys---  361 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITA----SEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYS---  361 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEe----ccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEe---
Confidence            334444566667777777777665    4678899999932     2234445678999999999999999998888   


Q ss_pred             ecCCcceEEEEecCcccCCCC-CccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeeccc
Q 019059           86 STGESYGAAIWQIPELYGQLN-SPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQS  164 (346)
Q Consensus        86 ~~~~d~~i~vw~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~  164 (346)
                       ||-||+|+.|+++......+ .........+.+|.+.|+.+++++...+ ++.++.||+++.|+...... ..+.....
T Consensus       362 -gg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~-Llscs~DgTvr~w~~~~~~~-~~f~~~~e  438 (577)
T KOG0642|consen  362 -GGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDR-LLSCSSDGTVRLWEPTEESP-CTFGEPKE  438 (577)
T ss_pred             -eccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccc-eeeecCCceEEeeccCCcCc-cccCCccc
Confidence             58999999999873322211 1123455678899999999999998775 77777899999999875543 22221111


Q ss_pred             CCCceeeEEEEeCCCC-CcEEEEecCCeEEEEEccCCCccceeec---------cceeEEEeCCCCCcEEEEecCCCeEE
Q 019059          165 SGMLHYLSGGAWDPHD-VNAVAATCESSVQFWDLRSMGKTNSIEH---------AHVRNVDYDTKKKHLLVTAADESGIH  234 (346)
Q Consensus       165 ~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~---------~~v~~~~~~~~~~~~l~~~~~dg~i~  234 (346)
                      .+   ....+.+-... .+.++...-+.-.++++.....+..+..         .++.-+.++|..+ +.+++..|+.|+
T Consensus       439 ~g---~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~-~~~~~hed~~Ir  514 (577)
T KOG0642|consen  439 HG---YPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTAD-ITFTAHEDRSIR  514 (577)
T ss_pred             cC---CcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCC-eeEecccCCcee
Confidence            12   23444443322 2222322333333444444443333321         1188899999998 999999999999


Q ss_pred             EEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          235 LWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       235 i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      ++|..+ ..++.....|...++++++.|+| .+|++++.|+.+++|.+..
T Consensus       515 ~~dn~~-~~~l~s~~a~~~svtslai~~ng-~~l~s~s~d~sv~l~kld~  562 (577)
T KOG0642|consen  515 FFDNKT-GKILHSMVAHKDSVTSLAIDPNG-PYLMSGSHDGSVRLWKLDV  562 (577)
T ss_pred             cccccc-cccchheeeccceecceeecCCC-ceEEeecCCceeehhhccc
Confidence            999987 66888899999999999999999 9999999999999999976

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=7.6e-19  Score=156.19  Aligned_cols=248  Identities=14%  Similarity=0.154  Sum_probs=180.3

Q ss_pred             ceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeecc---CCceEEEEee-cCCCCcEEEEecC
Q 019059           67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH---VGKINCVLWW-SSGRHDKLVSIDE  142 (346)
Q Consensus        67 ~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~-~~~~~~~~~~~~d  142 (346)
                      +-..+.|+|-.+.++++    +..-.|+|||.+         ..+.+..+..+   ...|+.+.+- .+...++++++.|
T Consensus      1066 ~pk~~~~hpf~p~i~~a----d~r~~i~vwd~e---------~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~d 1132 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAA----DDRERIRVWDWE---------KGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSD 1132 (1387)
T ss_pred             CCceeeecCCCceeEEc----CCcceEEEEecc---------cCceeccccCCCCCCCccceeeeecccchhheeeeccC
Confidence            35568889988888886    445589999998         55565555443   4568888875 4455578888889


Q ss_pred             CeEEEEEcCCCC-CCceeeecc------cCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---ee
Q 019059          143 ENIFLWSLDCSN-KNAQVQSKQ------SSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VR  212 (346)
Q Consensus       143 ~~i~vwd~~~~~-~~~~~~~~~------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~  212 (346)
                      |.|+||+--... ...++...-      ..+....-.-+.|.....+|+++|.-..|+|||....+....+..+.   ++
T Consensus      1133 GvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vT 1212 (1387)
T KOG1517|consen 1133 GVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVT 1212 (1387)
T ss_pred             ceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccce
Confidence            999999855332 222222211      11111122345788878888888888899999999888887776444   88


Q ss_pred             EEEeCCCCCcEEEEecCCCeEEEEEcccCCc--ceeeecCCCcc--eEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCC
Q 019059          213 NVDYDTKKKHLLVTAADESGIHLWDLRMLKA--PIQELPGHTHW--TWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHD  288 (346)
Q Consensus       213 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~--v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  288 (346)
                      ++.-+..+.+++++|..||.|++||.|....  .+...+.|...  |..+.+.+.|-..|++|+.||.|++||++...  
T Consensus      1213 aLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~-- 1290 (1387)
T KOG1517|consen 1213 ALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSS-- 1290 (1387)
T ss_pred             eecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCc--
Confidence            8877655544999999999999999986443  67778889877  99999999885569999999999999999810  


Q ss_pred             CCCcccccCCcccccccccccccccc--c-eeeEEEeCCCCCcEEEEeecCCeEEEeeecC
Q 019059          289 ELPSESLVESPNQRANSLLNSYSDYE--D-SVYGLAWSSREPWIFASLSYDGRVRNHMLEK  346 (346)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~~  346 (346)
                                     .+-..+...|.  + ..+++..+++.+ ++|+|+. +.|+||++.|
T Consensus      1291 ---------------~e~~~~iv~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G 1334 (1387)
T KOG1517|consen 1291 ---------------KETFLTIVAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSG 1334 (1387)
T ss_pred             ---------------ccccceeeeccccCccceeeeeccCCC-eeeecCc-ceEEEEecCh
Confidence                           11111222232  2 489999999997 8999998 9999999865

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.84  E-value=5.2e-17  Score=142.47  Aligned_cols=284  Identities=22%  Similarity=0.376  Sum_probs=200.4

Q ss_pred             EeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccc-cceEEeee-cCCCCceEEEEeecCCcceEEE
Q 019059           18 CISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHP-NEIWDLSS-CPFDQRIFSTVFSTGESYGAAI   95 (346)
Q Consensus        18 ~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~-~~~~~~l~~~~~~~~~d~~i~v   95 (346)
                      .+..+........+..+.    .++.+.+|+.....  .....+..+. ..+..+.+ ++++..++...  +..|+.+.+
T Consensus        67 ~i~~~~~~~~~~~~~~~~----~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~~~~  138 (466)
T COG2319          67 SITSIAFSPDGELLLSGS----SDGTIKLWDLDNGE--KLIKSLEGLHDSSVSKLALSSPDGNSILLAS--SSLDGTVKL  138 (466)
T ss_pred             eEEEEEECCCCcEEEEec----CCCcEEEEEcCCCc--eeEEEEeccCCCceeeEEEECCCcceEEecc--CCCCccEEE
Confidence            344444555555555443    56778888877754  1223333433 36777777 78777444432  345899999


Q ss_pred             EecCcccCCCCCcc-ceeeeeeeccCCceEEEEeecCCCCcEEEEec-CCeEEEEEcCCCCCCceeeecccCCCceeeEE
Q 019059           96 WQIPELYGQLNSPQ-LERIAALDAHVGKINCVLWWSSGRHDKLVSID-EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSG  173 (346)
Q Consensus        96 w~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~  173 (346)
                      |+..         . ......+..|...|..++|+|++.. +++++. ++.+++|++.........     .+|...+.+
T Consensus       139 ~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~  203 (466)
T COG2319         139 WDLS---------TPGKLIRTLEGHSESVTSLAFSPDGKL-LASGSSLDGTIKLWDLRTGKPLSTL-----AGHTDPVSS  203 (466)
T ss_pred             EEec---------CCCeEEEEEecCcccEEEEEECCCCCE-EEecCCCCCceEEEEcCCCceEEee-----ccCCCceEE
Confidence            9997         4 5777788899999999999999983 555554 999999999863322222     226678999


Q ss_pred             EEeCCCCCcEEEE-ecCCeEEEEEccCCCccceeeccc--eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecC
Q 019059          174 GAWDPHDVNAVAA-TCESSVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG  250 (346)
Q Consensus       174 ~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  250 (346)
                      ++|+|++..++++ +.|+.|++||...+.........|  .....|+|++. .+++++.|+.+++|+++.....+..+..
T Consensus       204 ~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~  282 (466)
T COG2319         204 LAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGS-LLASGSSDGTIRLWDLRSSSSLLRTLSG  282 (466)
T ss_pred             EEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCC-EEEEecCCCcEEEeeecCCCcEEEEEec
Confidence            9999998844444 789999999988666665222244  22337999996 7889999999999999975543444467


Q ss_pred             CCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccc--cccceeeEEEeCCCCCc
Q 019059          251 HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYS--DYEDSVYGLAWSSREPW  328 (346)
Q Consensus       251 ~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~  328 (346)
                      |...+.++.|+|++ ..+++++.|+.+++||...                   ........  .|...+..+.|.+++..
T Consensus       283 ~~~~v~~~~~~~~~-~~~~~~~~d~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (466)
T COG2319         283 HSSSVLSVAFSPDG-KLLASGSSDGTVRLWDLET-------------------GKLLSSLTLKGHEGPVSSLSFSPDGSL  342 (466)
T ss_pred             CCccEEEEEECCCC-CEEEEeeCCCcEEEEEcCC-------------------CceEEEeeecccCCceEEEEECCCCCE
Confidence            88999999999988 7777788899999998887                   44343333  67777899999433243


Q ss_pred             EEEEeecCCeEEEeeec
Q 019059          329 IFASLSYDGRVRNHMLE  345 (346)
Q Consensus       329 ~l~s~~~d~~v~vw~~~  345 (346)
                      ++..+..|+.+++|++.
T Consensus       343 ~~~~~~~d~~~~~~~~~  359 (466)
T COG2319         343 LVSGGSDDGTIRLWDLR  359 (466)
T ss_pred             EEEeecCCCcEEeeecC
Confidence            44444688999999875

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.82  E-value=1.9e-17  Score=131.36  Aligned_cols=234  Identities=17%  Similarity=0.177  Sum_probs=168.5

Q ss_pred             cceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEe-cCCe
Q 019059           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI-DEEN  144 (346)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~d~~  144 (346)
                      ..++.+.|..+...|..    |+.| ..++++.+         +.............|.-+-|+.+  .+++++- .-+.
T Consensus         6 ~ti~~~~~Nqd~~~lsv----Gs~~-Gyk~~~~~---------~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~   69 (391)
T KOG2110|consen    6 PTINFIGFNQDSTLLSV----GSKD-GYKIFSCS---------PFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRK   69 (391)
T ss_pred             cceeeeeeccceeEEEc----cCCC-ceeEEecC---------chHHhhcccCCCeEEEEeecccc--eeEEEecCCCce
Confidence            45666778876654444    3455 46888876         22222222233445666777654  1233332 2356


Q ss_pred             EEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeecc--c---eeEEEeCCC
Q 019059          145 IFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA--H---VRNVDYDTK  219 (346)
Q Consensus       145 i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~---v~~~~~~~~  219 (346)
                      +++++.........+...      .+|.++.++.  +.|++.-.+ .|+|||+++.+.+.++..-  +   +.+++.++.
T Consensus        70 Lkv~~~Kk~~~ICe~~fp------t~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~  140 (391)
T KOG2110|consen   70 LKVVHFKKKTTICEIFFP------TSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNA  140 (391)
T ss_pred             EEEEEcccCceEEEEecC------CceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCC
Confidence            889998866554444432      3899999975  445555544 4999999999998887643  3   677777777


Q ss_pred             CCcEEEEec-CCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCC-eEEEEecCCCCCCCCCcccccC
Q 019059          220 KKHLLVTAA-DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDS-TVNLWLVSTSNHDELPSESLVE  297 (346)
Q Consensus       220 ~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~  297 (346)
                      +.++.+-++ ..|.|.+||..+ -+++..+..|.+.+.+++|+++| .+|||+|+.| .|||+.+..             
T Consensus       141 n~ylAyp~s~t~GdV~l~d~~n-l~~v~~I~aH~~~lAalafs~~G-~llATASeKGTVIRVf~v~~-------------  205 (391)
T KOG2110|consen  141 NCYLAYPGSTTSGDVVLFDTIN-LQPVNTINAHKGPLAALAFSPDG-TLLATASEKGTVIRVFSVPE-------------  205 (391)
T ss_pred             CceEEecCCCCCceEEEEEccc-ceeeeEEEecCCceeEEEECCCC-CEEEEeccCceEEEEEEcCC-------------
Confidence            764444344 358999999998 45889999999999999999999 9999999999 589999998             


Q ss_pred             Ccccccccccccccccc--ceeeEEEeCCCCCcEEEEeecCCeEEEeeecC
Q 019059          298 SPNQRANSLLNSYSDYE--DSVYGLAWSSREPWIFASLSYDGRVRNHMLEK  346 (346)
Q Consensus       298 ~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~~  346 (346)
                            ++.+..+....  ..|.+++|+|+++ +|++.|..++|++|.|++
T Consensus       206 ------G~kl~eFRRG~~~~~IySL~Fs~ds~-~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  206 ------GQKLYEFRRGTYPVSIYSLSFSPDSQ-FLAASSNTETVHIFKLEK  249 (391)
T ss_pred             ------ccEeeeeeCCceeeEEEEEEECCCCC-eEEEecCCCeEEEEEecc
Confidence                  88888776432  3589999999998 899999999999999874

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.82  E-value=4.6e-18  Score=132.38  Aligned_cols=204  Identities=13%  Similarity=0.176  Sum_probs=159.6

Q ss_pred             cccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCcc-ceeeeeeeccCCceEEEEeecCCCCcEEEEecC
Q 019059           64 HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQ-LERIAALDAHVGKINCVLWWSSGRHDKLVSIDE  142 (346)
Q Consensus        64 h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d  142 (346)
                      -..+|+|.+|+++...++.+    -+...|.||....       .+ .++.+++..|...|++++|+|..++ +++++.|
T Consensus         9 ~~~pitchAwn~drt~iAv~----~~~~evhiy~~~~-------~~~w~~~htls~Hd~~vtgvdWap~snr-Ivtcs~d   76 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVS----PNNHEVHIYSMLG-------ADLWEPAHTLSEHDKIVTGVDWAPKSNR-IVTCSHD   76 (361)
T ss_pred             ccCceeeeeecCCCceEEec----cCCceEEEEEecC-------CCCceeceehhhhCcceeEEeecCCCCc-eeEccCC
Confidence            34789999999999988886    4677899998762       23 6888999999999999999999986 8888899


Q ss_pred             CeEEEEEcCCCCCC-ceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCc---cceeeccc---eeEEE
Q 019059          143 ENIFLWSLDCSNKN-AQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGK---TNSIEHAH---VRNVD  215 (346)
Q Consensus       143 ~~i~vwd~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~---v~~~~  215 (346)
                      ..-++|....+... ..+...   .+....+++.|+|.++.+++++....|.||-++....   .+.+..+.   |++++
T Consensus        77 rnayVw~~~~~~~WkptlvLl---RiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sld  153 (361)
T KOG1523|consen   77 RNAYVWTQPSGGTWKPTLVLL---RINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLD  153 (361)
T ss_pred             CCccccccCCCCeeccceeEE---EeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeee
Confidence            99999998443322 222222   2455899999999999999999999999998875432   12222222   99999


Q ss_pred             eCCCCCcEEEEecCCCeEEEEEccc-----C------------CcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEE
Q 019059          216 YDTKKKHLLVTAADESGIHLWDLRM-----L------------KAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVN  278 (346)
Q Consensus       216 ~~~~~~~~l~~~~~dg~i~i~d~~~-----~------------~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~  278 (346)
                      |+|++- ++++|+.|+..++|..--     .            +..+.++....+.+..+.|+|+| ..|+-.+.|..+.
T Consensus       154 WhpnnV-LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG-~~lawv~Hds~v~  231 (361)
T KOG1523|consen  154 WHPNNV-LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSG-NRLAWVGHDSTVS  231 (361)
T ss_pred             ccCCcc-eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCC-CEeeEecCCCceE
Confidence            999997 999999999999996421     0            01233443456889999999999 9999999999999


Q ss_pred             EEecCC
Q 019059          279 LWLVST  284 (346)
Q Consensus       279 iwd~~~  284 (346)
                      +-|...
T Consensus       232 ~~da~~  237 (361)
T KOG1523|consen  232 FVDAAG  237 (361)
T ss_pred             EeecCC
Confidence            999876

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.82  E-value=2.6e-17  Score=144.42  Aligned_cols=244  Identities=23%  Similarity=0.371  Sum_probs=186.4

Q ss_pred             eeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccce-eeeeeeccC-CceEEEEe-ecCCCCcE
Q 019059           60 GLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLE-RIAALDAHV-GKINCVLW-WSSGRHDK  136 (346)
Q Consensus        60 ~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~-~~~~~~~~~-~~i~~~~~-~~~~~~~~  136 (346)
                      ....|...+..+.+.+.+..++..    +.|+.+.+|+..         ... ....+..+. ..+..+.+ ++++...+
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~----~~d~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSG----SSDGTIKLWDLD---------NGEKLIKSLEGLHDSSVSKLALSSPDGNSIL  126 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEe----cCCCcEEEEEcC---------CCceeEEEEeccCCCceeeEEEECCCcceEE
Confidence            456789999999999999888875    579999999987         232 555555533 36777777 77776334


Q ss_pred             EEEe-cCCeEEEEEcCC-CCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec-CCeEEEEEccCCCccceeeccc---
Q 019059          137 LVSI-DEENIFLWSLDC-SNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-ESSVQFWDLRSMGKTNSIEHAH---  210 (346)
Q Consensus       137 ~~~~-~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~---  210 (346)
                      +..+ .|+.+.+|+... ......     ...|...+..++|+|++..+++++. ++.+++|++..+.....+. .|   
T Consensus       127 ~~~~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  200 (466)
T COG2319         127 LASSSLDGTVKLWDLSTPGKLIRT-----LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLA-GHTDP  200 (466)
T ss_pred             eccCCCCccEEEEEecCCCeEEEE-----EecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeec-cCCCc
Confidence            4434 489999999986 221111     2345668889999999998888875 9999999999877776666 34   


Q ss_pred             eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCccee-eecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCC
Q 019059          211 VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQ-ELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDE  289 (346)
Q Consensus       211 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~  289 (346)
                      +.+++|+|++..++++++.|+.|++||.+. ...+. .+..|.... ...|+|++ .++++++.|+.+++|+++.     
T Consensus       201 v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~-----  272 (466)
T COG2319         201 VSSLAFSPDGGLLIASGSSDGTIRLWDLST-GKLLRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRS-----  272 (466)
T ss_pred             eEEEEEcCCcceEEEEecCCCcEEEEECCC-CcEEeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecC-----
Confidence            999999999873445558999999998884 44555 577888775 44899999 8999999999999999997     


Q ss_pred             CCcccccCCcccccccc-ccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          290 LPSESLVESPNQRANSL-LNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       290 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                                    ... +..+.+|...|.++.|+|++. .+++++.|+.+++|+++
T Consensus       273 --------------~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~d~~~~~~~~~  314 (466)
T COG2319         273 --------------SSSLLRTLSGHSSSVLSVAFSPDGK-LLASGSSDGTVRLWDLE  314 (466)
T ss_pred             --------------CCcEEEEEecCCccEEEEEECCCCC-EEEEeeCCCcEEEEEcC
Confidence                          222 333367788899999999776 66668888889999865

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.82  E-value=3.3e-18  Score=143.51  Aligned_cols=201  Identities=15%  Similarity=0.280  Sum_probs=158.8

Q ss_pred             eeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEE
Q 019059           60 GLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS  139 (346)
Q Consensus        60 ~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  139 (346)
                      ....|...|..+.|+..|.+|++++-+ +....|.|+++.         ......-|+...+.|.++.|+|...++++++
T Consensus       516 ~~I~~~k~i~~vtWHrkGDYlatV~~~-~~~~~VliHQLS---------K~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT  585 (733)
T KOG0650|consen  516 IVIKHPKSIRQVTWHRKGDYLATVMPD-SGNKSVLIHQLS---------KRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT  585 (733)
T ss_pred             EEEecCCccceeeeecCCceEEEeccC-CCcceEEEEecc---------cccccCchhhcCCceeEEEecCCCceEEEEe
Confidence            456788999999999999999988633 334578899988         3344445656678899999999999755555


Q ss_pred             ecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCC-ccceeeccc---eeEEE
Q 019059          140 IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG-KTNSIEHAH---VRNVD  215 (346)
Q Consensus       140 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~---v~~~~  215 (346)
                        ...|++||+.......++..     ....+..++.+|.|..|+.++.|+.+..+|+.-.. +.+++. -|   +++++
T Consensus       586 --q~~vRiYdL~kqelvKkL~t-----g~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr-~H~~avr~Va  657 (733)
T KOG0650|consen  586 --QRSVRIYDLSKQELVKKLLT-----GSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLR-LHEKAVRSVA  657 (733)
T ss_pred             --ccceEEEehhHHHHHHHHhc-----CCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhh-hhhhhhhhhh
Confidence              58999999986544444433     23478999999999999999999999999998664 444444 44   99999


Q ss_pred             eCCCCCcEEEEecCCCeEEEEEcccC--------CcceeeecCCCcc----eEEEEeCCCCCcEEEEecCCCeEEEE
Q 019059          216 YDTKKKHLLVTAADESGIHLWDLRML--------KAPIQELPGHTHW----TWAVCCNPEYDGFILSAGTDSTVNLW  280 (346)
Q Consensus       216 ~~~~~~~~l~~~~~dg~i~i~d~~~~--------~~~~~~~~~~~~~----v~~v~~~~~~~~~l~s~~~d~~i~iw  280 (346)
                      |++.-+ ++++|+.||++.||.-.-.        -.|+..+.+|...    |..+.|+|.. .+|++++.||+|++|
T Consensus       658 ~H~ryP-Lfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~q-pWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  658 FHKRYP-LFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQ-PWLFSAGADGTIRLF  732 (733)
T ss_pred             hccccc-eeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCC-ceEEecCCCceEEee
Confidence            999998 9999999999998853211        1266778888765    8899999999 899999999999998

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.81  E-value=8.8e-18  Score=130.81  Aligned_cols=223  Identities=13%  Similarity=0.124  Sum_probs=171.1

Q ss_pred             eeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEE
Q 019059          116 LDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFW  195 (346)
Q Consensus       116 ~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~  195 (346)
                      +..-..+|+|.+|++|.+. ++.+.....|.||.....+....  ......|...++++.|+|..+.|++++.|..-++|
T Consensus         6 ~~~~~~pitchAwn~drt~-iAv~~~~~evhiy~~~~~~~w~~--~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw   82 (361)
T KOG1523|consen    6 FHRLLEPITCHAWNSDRTQ-IAVSPNNHEVHIYSMLGADLWEP--AHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVW   82 (361)
T ss_pred             eeeccCceeeeeecCCCce-EEeccCCceEEEEEecCCCCcee--ceehhhhCcceeEEeecCCCCceeEccCCCCcccc
Confidence            3334678999999999995 56666678999999876542222  23345677899999999999999999999999999


Q ss_pred             EccC-CC--ccceeecc-c-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCc---ceeeecCCCcceEEEEeCCCCCcE
Q 019059          196 DLRS-MG--KTNSIEHA-H-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA---PIQELPGHTHWTWAVCCNPEYDGF  267 (346)
Q Consensus       196 d~~~-~~--~~~~~~~~-~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~v~~v~~~~~~~~~  267 (346)
                      .... ++  +...+..- . .+++.|+|..+ .|++|+.-..|.+|-++....   ..+.-+.+...|+++.|+|++ -+
T Consensus        83 ~~~~~~~WkptlvLlRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn-VL  160 (361)
T KOG1523|consen   83 TQPSGGTWKPTLVLLRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN-VL  160 (361)
T ss_pred             ccCCCCeeccceeEEEeccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc-ce
Confidence            9943 33  22222211 2 99999999997 999999999999998875332   112334567889999999999 99


Q ss_pred             EEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          268 ILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       268 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      |++|+.|+..||+..-- +.-++......+....+.++++.++....++|..+.|+|+|. .|+-.+.|..+.+-|-.
T Consensus       161 laaGs~D~k~rVfSayI-K~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~-~lawv~Hds~v~~~da~  236 (361)
T KOG1523|consen  161 LAAGSTDGKCRVFSAYI-KGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN-RLAWVGHDSTVSFVDAA  236 (361)
T ss_pred             ecccccCcceeEEEEee-eccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC-EeeEecCCCceEEeecC
Confidence            99999999999998765 233333445555556667888888877778999999999998 89999999999887643

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.81  E-value=1.3e-18  Score=147.17  Aligned_cols=244  Identities=15%  Similarity=0.183  Sum_probs=170.3

Q ss_pred             cCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCC
Q 019059           74 CPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCS  153 (346)
Q Consensus        74 ~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~  153 (346)
                      +.+..++++-.  .|..|.|-||++.++..   -+.+ .+-.+ .....|+.+.|.|-...-++++++||.|++|.+..+
T Consensus       588 can~~rvAVPL--~g~gG~iai~el~~PGr---LPDg-v~p~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~  660 (1012)
T KOG1445|consen  588 CANNKRVAVPL--AGSGGVIAIYELNEPGR---LPDG-VMPGL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTAN  660 (1012)
T ss_pred             eeccceEEEEe--cCCCceEEEEEcCCCCC---CCcc-ccccc-ccCceeeecccCCCChHHeeecccCceEEEEEeccC
Confidence            33344444432  46678999999984211   1111 11222 245679999999987776888899999999999865


Q ss_pred             CCCcee--eecccCCCceeeEEEEeCCCC-CcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEe
Q 019059          154 NKNAQV--QSKQSSGMLHYLSGGAWDPHD-VNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTA  227 (346)
Q Consensus       154 ~~~~~~--~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~  227 (346)
                      ......  .......|...|+++.|+|-. ..|++++.|.+|++||+++++....+. +|   |.+++|+|+|+ .+++.
T Consensus       661 gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~-gHtdqIf~~AWSpdGr-~~AtV  738 (1012)
T KOG1445|consen  661 GLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLV-GHTDQIFGIAWSPDGR-RIATV  738 (1012)
T ss_pred             CCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheec-cCcCceeEEEECCCCc-ceeee
Confidence            433222  222345678899999999964 557788899999999999998877777 66   99999999999 99999


Q ss_pred             cCCCeEEEEEcccCCcceeeecCCC-cceEEEEeCCCCCcEEEEecCCC----eEEEEecCCCCCCCCCcccccCCcccc
Q 019059          228 ADESGIHLWDLRMLKAPIQELPGHT-HWTWAVCCNPEYDGFILSAGTDS----TVNLWLVSTSNHDELPSESLVESPNQR  302 (346)
Q Consensus       228 ~~dg~i~i~d~~~~~~~~~~~~~~~-~~v~~v~~~~~~~~~l~s~~~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~  302 (346)
                      +.||+|++|..++..+++..-.+.. ..--.|.|.-+| +++++.+.|.    +|.+||.++..                
T Consensus       739 cKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdg-r~viv~Gfdk~SeRQv~~Y~Aq~l~----------------  801 (1012)
T KOG1445|consen  739 CKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDG-RIVIVVGFDKSSERQVQMYDAQTLD----------------  801 (1012)
T ss_pred             ecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecC-cEEEEecccccchhhhhhhhhhhcc----------------
Confidence            9999999999998666666544322 223457788899 8887777664    68889887621                


Q ss_pred             cccccccccccc-ceeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059          303 ANSLLNSYSDYE-DSVYGLAWSSREPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       303 ~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~  344 (346)
                       ..++.+..-.. -.+.--.+.+|...++++|-.|..|.+|.+
T Consensus       802 -~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv  843 (1012)
T KOG1445|consen  802 -LRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEV  843 (1012)
T ss_pred             -CCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEe
Confidence             12222211100 012223456677678899999999999986

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.81  E-value=1.1e-17  Score=146.11  Aligned_cols=211  Identities=10%  Similarity=0.087  Sum_probs=141.2

Q ss_pred             cceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEec--CCeEEEEEcCCCCCCceeeecccCCC
Q 019059           90 SYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSID--EENIFLWSLDCSNKNAQVQSKQSSGM  167 (346)
Q Consensus        90 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~  167 (346)
                      +..|.+||.+          +...+.+..|...+...+|+|||+++++++..  +..|++||+.+++.. .+.  ...+ 
T Consensus       183 ~~~i~i~d~d----------g~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~-~l~--~~~g-  248 (429)
T PRK01742        183 PYEVRVADYD----------GFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK-VVA--SFRG-  248 (429)
T ss_pred             eEEEEEECCC----------CCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE-EEe--cCCC-
Confidence            5789999986          22245566788889999999999975555532  347999999865422 111  1122 


Q ss_pred             ceeeEEEEeCCCCCcEEEEe-cCCeEEE--EEccCCCccceeeccc--eeEEEeCCCCCcEEEEecCCCeEEEEEcccCC
Q 019059          168 LHYLSGGAWDPHDVNAVAAT-CESSVQF--WDLRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK  242 (346)
Q Consensus       168 ~~~v~~~~~~~~~~~l~~~~-~d~~i~i--~d~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  242 (346)
                        ....++|+||++.|+.+. .++.+.|  ||+.+++. ..+....  +....|+|+|+.+++++..++...+|++....
T Consensus       249 --~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~  325 (429)
T PRK01742        249 --HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASG  325 (429)
T ss_pred             --ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCC
Confidence              234689999999888775 5776554  56665543 3333222  78899999998555566677888899876533


Q ss_pred             cceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEe
Q 019059          243 APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAW  322 (346)
Q Consensus       243 ~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  322 (346)
                      .....+ .+..  ..+.|+|+| .+|+..+.++ +.+||+.+                   ++.......+  ...++.|
T Consensus       326 ~~~~~l-~~~~--~~~~~SpDG-~~ia~~~~~~-i~~~Dl~~-------------------g~~~~lt~~~--~~~~~~~  379 (429)
T PRK01742        326 GGASLV-GGRG--YSAQISADG-KTLVMINGDN-VVKQDLTS-------------------GSTEVLSSTF--LDESPSI  379 (429)
T ss_pred             CCeEEe-cCCC--CCccCCCCC-CEEEEEcCCC-EEEEECCC-------------------CCeEEecCCC--CCCCceE
Confidence            333333 3333  457899999 8888777665 55699887                   3322111111  1356789


Q ss_pred             CCCCCcEEEEeecCCeEEEeee
Q 019059          323 SSREPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       323 ~~~~~~~l~s~~~d~~v~vw~~  344 (346)
                      +|+|+ +|+.++.++...+|.+
T Consensus       380 sPdG~-~i~~~s~~g~~~~l~~  400 (429)
T PRK01742        380 SPNGI-MIIYSSTQGLGKVLQL  400 (429)
T ss_pred             CCCCC-EEEEEEcCCCceEEEE
Confidence            99997 7888888888887764

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.81  E-value=1.2e-15  Score=129.27  Aligned_cols=294  Identities=11%  Similarity=0.133  Sum_probs=193.7

Q ss_pred             EEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccc
Q 019059           31 FLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQL  110 (346)
Q Consensus        31 ~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~  110 (346)
                      +++|+++.+..+.|++++++.+...+.......-.....-++++|+++.|.++...+..++.|..|.+...     ....
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~-----~g~L   76 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPD-----TGTL   76 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETT-----TTEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCC-----ccee
Confidence            67888877778999999998887777766555555667789999999888887511115789999998731     1234


Q ss_pred             eeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeee-cc--------cCCCceeeEEEEeCCCCC
Q 019059          111 ERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQS-KQ--------SSGMLHYLSGGAWDPHDV  181 (346)
Q Consensus       111 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~-~~--------~~~~~~~v~~~~~~~~~~  181 (346)
                      +.+.+..........++++|++++++++...+|.|.++++........... ..        .........++.++|+++
T Consensus        77 ~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~  156 (345)
T PF10282_consen   77 TLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGR  156 (345)
T ss_dssp             EEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSS
T ss_pred             EEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCC
Confidence            555555434455678999999997555556699999999987533333211 00        001123467889999999


Q ss_pred             cEEEEec-CCeEEEEEccCCCc-c---ce--eeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcc---eeeecC
Q 019059          182 NAVAATC-ESSVQFWDLRSMGK-T---NS--IEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAP---IQELPG  250 (346)
Q Consensus       182 ~l~~~~~-d~~i~i~d~~~~~~-~---~~--~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~  250 (346)
                      ++++... ...|.+|++..... +   ..  +..+. .+.++|+|++++++++.-.++.|.++++......   +..+..
T Consensus       157 ~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~  236 (345)
T PF10282_consen  157 FVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIST  236 (345)
T ss_dssp             EEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES
T ss_pred             EEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeee
Confidence            9888763 56899999987652 1   12  22233 9999999999977777778899999998832211   111211


Q ss_pred             ------CCcceEEEEeCCCCCcEEEEe-cCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeC
Q 019059          251 ------HTHWTWAVCCNPEYDGFILSA-GTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWS  323 (346)
Q Consensus       251 ------~~~~v~~v~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  323 (346)
                            .......|+++|+| ++|+++ ..+++|.+|++.....               ..+.+..+.......+.++++
T Consensus       237 ~~~~~~~~~~~~~i~ispdg-~~lyvsnr~~~sI~vf~~d~~~g---------------~l~~~~~~~~~G~~Pr~~~~s  300 (345)
T PF10282_consen  237 LPEGFTGENAPAEIAISPDG-RFLYVSNRGSNSISVFDLDPATG---------------TLTLVQTVPTGGKFPRHFAFS  300 (345)
T ss_dssp             CETTSCSSSSEEEEEE-TTS-SEEEEEECTTTEEEEEEECTTTT---------------TEEEEEEEEESSSSEEEEEE-
T ss_pred             ccccccccCCceeEEEecCC-CEEEEEeccCCEEEEEEEecCCC---------------ceEEEEEEeCCCCCccEEEEe
Confidence                  11257889999999 666554 4577999999953000               012223333223347999999


Q ss_pred             CCCCcEEEEeecCCeEEEeeec
Q 019059          324 SREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       324 ~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      |+|++++++...++.|.+|+++
T Consensus       301 ~~g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  301 PDGRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             TTSSEEEEEETTTTEEEEEEEE
T ss_pred             CCCCEEEEEecCCCeEEEEEEe
Confidence            9999777777788899999874

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=1.9e-18  Score=143.73  Aligned_cols=224  Identities=14%  Similarity=0.188  Sum_probs=156.7

Q ss_pred             eeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCC--CCcEEEEecCCe
Q 019059          114 AALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPH--DVNAVAATCESS  191 (346)
Q Consensus       114 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~  191 (346)
                      +.+.+|++.|+|+.|+.+|. ++++|++|-.+.|||.-..+...    .-..+|...|.++.|-|.  .+.+++++.|..
T Consensus        44 ~eL~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllh----sI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~  118 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLH----SISTGHTANIFSVKFVPYTNNRIVLSGAGDKL  118 (758)
T ss_pred             hhhccccceecceeecCCCC-EEeecCCcceEEeecchhcceee----eeecccccceeEEeeeccCCCeEEEeccCcce
Confidence            46789999999999999999 47777889999999988443222    223578889999999884  456778888999


Q ss_pred             EEEEEccCCC----------ccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeee---------c
Q 019059          192 VQFWDLRSMG----------KTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL---------P  249 (346)
Q Consensus       192 i~i~d~~~~~----------~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---------~  249 (346)
                      |+++|+...+          ....+. .|   |..|+-.|++++.+.++++||+|+-+|+|.+..+-...         .
T Consensus       119 i~lfdl~~~~~~~~d~~~~~~~~~~~-cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~  197 (758)
T KOG1310|consen  119 IKLFDLDSSKEGGMDHGMEETTRCWS-CHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYN  197 (758)
T ss_pred             EEEEecccccccccccCccchhhhhh-hhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhc
Confidence            9999998522          111121 33   88999999998899999999999999999744322211         1


Q ss_pred             CCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccc-cccc-----------cee
Q 019059          250 GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSY-SDYE-----------DSV  317 (346)
Q Consensus       250 ~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----------~~v  317 (346)
                      ..--...++..+|..+.+|++|+.|-..++||.+.-.............+++. ..++.-+ .+|.           ..+
T Consensus       198 ~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~-~~cv~yf~p~hlkn~~gn~~~~~~~~  276 (758)
T KOG1310|consen  198 PQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKD-CRCVRYFSPGHLKNSQGNLDRYITCC  276 (758)
T ss_pred             hhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcc-cchhheecCccccCcccccccceeee
Confidence            11234578999999999999999999999999665322222222222222211 1112111 1111           125


Q ss_pred             eEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          318 YGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       318 ~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      +-+.|+|+|..+|++-+.+ .|+++++.
T Consensus       277 t~vtfnpNGtElLvs~~gE-hVYlfdvn  303 (758)
T KOG1310|consen  277 TYVTFNPNGTELLVSWGGE-HVYLFDVN  303 (758)
T ss_pred             EEEEECCCCcEEEEeeCCe-EEEEEeec
Confidence            6789999998777777754 68888874

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.80  E-value=3.4e-18  Score=145.40  Aligned_cols=233  Identities=10%  Similarity=0.191  Sum_probs=174.4

Q ss_pred             ceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEE
Q 019059           67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIF  146 (346)
Q Consensus        67 ~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~  146 (346)
                      .|..++|-|||..|+.+     .+..+.+||..         .+..+.++++|++.|+|++|+.+|+. +++++.|..|.
T Consensus        14 ci~d~afkPDGsqL~lA-----Ag~rlliyD~n---------dG~llqtLKgHKDtVycVAys~dGkr-FASG~aDK~VI   78 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILA-----AGSRLLVYDTS---------DGTLLQPLKGHKDTVYCVAYAKDGKR-FASGSADKSVI   78 (1081)
T ss_pred             chheeEECCCCceEEEe-----cCCEEEEEeCC---------CcccccccccccceEEEEEEccCCce-eccCCCceeEE
Confidence            79999999999999987     44589999988         78899999999999999999999994 66778899999


Q ss_pred             EEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccceeEEEeCCCCCcEEEE
Q 019059          147 LWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVT  226 (346)
Q Consensus       147 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  226 (346)
                      +|...-.    -+..   ..|...|.++.|+|-...+++++- ...-+|........+.-....+.+.+|..||. +++.
T Consensus        79 ~W~~klE----G~Lk---YSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V~K~kss~R~~~CsWtnDGq-ylal  149 (1081)
T KOG1538|consen   79 IWTSKLE----GILK---YSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQ-YLAL  149 (1081)
T ss_pred             Eeccccc----ceee---eccCCeeeEeecCchHHHhhhcch-hhccccChhhhhHHhhhhheeEEEeeecCCCc-EEEE
Confidence            9986522    1222   236779999999998888887763 23567887654433222212299999999998 8999


Q ss_pred             ecCCCeEEEEEcccCCcce--eeecCCCcceEEEEeCCCC----CcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcc
Q 019059          227 AADESGIHLWDLRMLKAPI--QELPGHTHWTWAVCCNPEY----DGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPN  300 (346)
Q Consensus       227 ~~~dg~i~i~d~~~~~~~~--~~~~~~~~~v~~v~~~~~~----~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  300 (346)
                      |..+|+|.+-+-.. ...+  ..-.+...+|.+++|+|..    ...+++.....++.+|.+..                
T Consensus       150 G~~nGTIsiRNk~g-Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG----------------  212 (1081)
T KOG1538|consen  150 GMFNGTISIRNKNG-EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG----------------  212 (1081)
T ss_pred             eccCceEEeecCCC-CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc----------------
Confidence            99999999886432 2122  2222467899999999975    24677777778888887763                


Q ss_pred             ccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          301 QRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       301 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                          +.+..-..-.-...++.+.|+|. ++..|+.|+.+.+|.-+
T Consensus       213 ----~~Igk~r~L~FdP~CisYf~NGE-y~LiGGsdk~L~~fTR~  252 (1081)
T KOG1538|consen  213 ----KQIGKDRALNFDPCCISYFTNGE-YILLGGSDKQLSLFTRD  252 (1081)
T ss_pred             ----eeecccccCCCCchhheeccCCc-EEEEccCCCceEEEeec
Confidence                44432222222357899999998 77788889999988644

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.80  E-value=8.3e-17  Score=136.32  Aligned_cols=233  Identities=12%  Similarity=0.135  Sum_probs=150.3

Q ss_pred             cCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCC
Q 019059           87 TGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG  166 (346)
Q Consensus        87 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~  166 (346)
                      ...++.|.+|++..      ....+.+..+. +.+....+.++|+++.+++++..++.|.+|+++.............. 
T Consensus         8 ~~~~~~I~~~~~~~------~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~-   79 (330)
T PRK11028          8 SPESQQIHVWNLNH------EGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLP-   79 (330)
T ss_pred             cCCCCCEEEEEECC------CCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCC-
Confidence            36789999999962      11334555553 34567789999999965455456899999999732222111111111 


Q ss_pred             CceeeEEEEeCCCCCcEEEEec-CCeEEEEEccCCC-c---cceeec-cceeEEEeCCCCCcEEEEecCCCeEEEEEccc
Q 019059          167 MLHYLSGGAWDPHDVNAVAATC-ESSVQFWDLRSMG-K---TNSIEH-AHVRNVDYDTKKKHLLVTAADESGIHLWDLRM  240 (346)
Q Consensus       167 ~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~-~---~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  240 (346)
                        .....++++|+++.+++++. ++.|.+||+.+.. .   ...+.. .++.+++++|++++++++...++.|.+||+.+
T Consensus        80 --~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~  157 (330)
T PRK11028         80 --GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSD  157 (330)
T ss_pred             --CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECC
Confidence              24568999999999988874 8899999997432 2   222221 12788899999986667777789999999976


Q ss_pred             CCcce----eeec-CCCcceEEEEeCCCCCcEEEEecC-CCeEEEEecCCCCCCCCCcccccCCcccccccccccccc--
Q 019059          241 LKAPI----QELP-GHTHWTWAVCCNPEYDGFILSAGT-DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD--  312 (346)
Q Consensus       241 ~~~~~----~~~~-~~~~~v~~v~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  312 (346)
                      .+...    .... ........+.|+|++ ++++++.. +++|.+|++......               .+.+..+..  
T Consensus       158 ~g~l~~~~~~~~~~~~g~~p~~~~~~pdg-~~lyv~~~~~~~v~v~~~~~~~~~---------------~~~~~~~~~~p  221 (330)
T PRK11028        158 DGHLVAQEPAEVTTVEGAGPRHMVFHPNQ-QYAYCVNELNSSVDVWQLKDPHGE---------------IECVQTLDMMP  221 (330)
T ss_pred             CCcccccCCCceecCCCCCCceEEECCCC-CEEEEEecCCCEEEEEEEeCCCCC---------------EEEEEEEecCC
Confidence            33211    0011 123446789999999 78877765 899999999741100               111111111  


Q ss_pred             ----ccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          313 ----YEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       313 ----~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                          +......+.++|++++++++...++.|.+|+++
T Consensus       222 ~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~  258 (330)
T PRK11028        222 ADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVS  258 (330)
T ss_pred             CcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEe
Confidence                112345689999998555554568899999874

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.80  E-value=1e-17  Score=146.12  Aligned_cols=240  Identities=11%  Similarity=0.113  Sum_probs=156.3

Q ss_pred             CCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccC
Q 019059           41 ENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV  120 (346)
Q Consensus        41 ~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~  120 (346)
                      +..+++++++..+.    ..+..|...+.+++|+|+++.|+.+.. .+.+..|.+||+..       ...+.+..+.+| 
T Consensus       183 ~~~i~i~d~dg~~~----~~lt~~~~~v~~p~wSPDG~~la~~s~-~~~~~~i~i~dl~t-------g~~~~l~~~~g~-  249 (429)
T PRK01742        183 PYEVRVADYDGFNQ----FIVNRSSQPLMSPAWSPDGSKLAYVSF-ENKKSQLVVHDLRS-------GARKVVASFRGH-  249 (429)
T ss_pred             eEEEEEECCCCCCc----eEeccCCCccccceEcCCCCEEEEEEe-cCCCcEEEEEeCCC-------CceEEEecCCCc-
Confidence            35677777655432    344567888999999999999987642 12345799999871       122233334333 


Q ss_pred             CceEEEEeecCCCCcEEEEecCCeEEEE--EcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEe-cCCeEEEEEc
Q 019059          121 GKINCVLWWSSGRHDKLVSIDEENIFLW--SLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT-CESSVQFWDL  197 (346)
Q Consensus       121 ~~i~~~~~~~~~~~~~~~~~~d~~i~vw--d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~  197 (346)
                        ...++|+|||+.++++...++.+.||  |+.++. ...+.     .+...+....|+||++.++.++ .++...+|++
T Consensus       250 --~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt-----~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~  321 (429)
T PRK01742        250 --NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLT-----SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRM  321 (429)
T ss_pred             --cCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeec-----cCCCCcCCEEECCCCCEEEEEECCCCCceEEEE
Confidence              44689999999755555567766655  554432 22211     1233577889999999887766 4678888877


Q ss_pred             cCCCc-cceeeccceeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCe
Q 019059          198 RSMGK-TNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDST  276 (346)
Q Consensus       198 ~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~  276 (346)
                      ..... ...+... -....|+|+++ .++..+.++ +.+||+.+.. . ..+... .....+.|+|+| ++|+.++.++.
T Consensus       322 ~~~~~~~~~l~~~-~~~~~~SpDG~-~ia~~~~~~-i~~~Dl~~g~-~-~~lt~~-~~~~~~~~sPdG-~~i~~~s~~g~  394 (429)
T PRK01742        322 SASGGGASLVGGR-GYSAQISADGK-TLVMINGDN-VVKQDLTSGS-T-EVLSST-FLDESPSISPNG-IMIIYSSTQGL  394 (429)
T ss_pred             ECCCCCeEEecCC-CCCccCCCCCC-EEEEEcCCC-EEEEECCCCC-e-EEecCC-CCCCCceECCCC-CEEEEEEcCCC
Confidence            54322 2222111 24578999998 666665554 5569987632 2 222222 233567899999 89999888998


Q ss_pred             EEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCC
Q 019059          277 VNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSR  325 (346)
Q Consensus       277 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  325 (346)
                      +.+|++..                 ..+.....+..|.+.+...+|+|-
T Consensus       395 ~~~l~~~~-----------------~~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        395 GKVLQLVS-----------------ADGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             ceEEEEEE-----------------CCCCceEEccCCCCCCCCcccCCC
Confidence            88887632                 026677778888888999999985

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.80  E-value=2.4e-17  Score=146.90  Aligned_cols=272  Identities=19%  Similarity=0.167  Sum_probs=176.5

Q ss_pred             CCCeEEEEEecCCCCeEEEeeeeccccceEEeeecC-CCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeee-
Q 019059           40 EENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCP-FDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD-  117 (346)
Q Consensus        40 ~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~-  117 (346)
                      ....|.+|++......-....-......|+++.+-. ++..|+.+   ++.||.|+||+-.....    .+.+.+..+. 
T Consensus      1084 ~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLt---as~dGvIRIwk~y~~~~----~~~eLVTaw~~ 1156 (1387)
T KOG1517|consen 1084 DRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLT---ASSDGVIRIWKDYADKW----KKPELVTAWSS 1156 (1387)
T ss_pred             CcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheee---eccCceEEEeccccccc----CCceeEEeecc
Confidence            346677887766432111111112236788888854 33344444   37999999997542110    1223333221 


Q ss_pred             ------ccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCC-CCCcEEEEecCC
Q 019059          118 ------AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDP-HDVNAVAATCES  190 (346)
Q Consensus       118 ------~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~  190 (346)
                            +..+.-.-++|.....+ ++++|+-..|+|||.........+...    ....++++.-+. .|+.+++|..||
T Consensus      1157 Ls~~~~~~r~~~~v~dWqQ~~G~-Ll~tGd~r~IRIWDa~~E~~~~diP~~----s~t~vTaLS~~~~~gn~i~AGfaDG 1231 (1387)
T KOG1517|consen 1157 LSDQLPGARGTGLVVDWQQQSGH-LLVTGDVRSIRIWDAHKEQVVADIPYG----SSTLVTALSADLVHGNIIAAGFADG 1231 (1387)
T ss_pred             ccccCccCCCCCeeeehhhhCCe-EEecCCeeEEEEEecccceeEeecccC----CCccceeecccccCCceEEEeecCC
Confidence                  11222245678777665 666666789999999865433333222    233566665433 357788888999


Q ss_pred             eEEEEEccCCCc--cceeeccc-----eeEEEeCCCCCcEEEEecCCCeEEEEEcccC-CcceeeecCCC---cceEEEE
Q 019059          191 SVQFWDLRSMGK--TNSIEHAH-----VRNVDYDTKKKHLLVTAADESGIHLWDLRML-KAPIQELPGHT---HWTWAVC  259 (346)
Q Consensus       191 ~i~i~d~~~~~~--~~~~~~~~-----v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~---~~v~~v~  259 (346)
                      .|++||.+...+  .......|     |..+.+.+.|-.-+++|+.+|.|++||+|.. .....++..|-   +..+++.
T Consensus      1232 svRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~ 1311 (1387)
T KOG1517|consen 1232 SVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALT 1311 (1387)
T ss_pred             ceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeee
Confidence            999999986543  22222344     8889998877645999999999999999973 22222222222   2489999


Q ss_pred             eCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccccc-------ccceeeEEEeCCCCCcEEEE
Q 019059          260 CNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD-------YEDSVYGLAWSSREPWIFAS  332 (346)
Q Consensus       260 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~s  332 (346)
                      .+++. ..+|+|+. +.|+||++..                    +.+..+..       ..+.+.+++|+|... ++|+
T Consensus      1312 VH~ha-piiAsGs~-q~ikIy~~~G--------------------~~l~~~k~n~~F~~q~~gs~scL~FHP~~~-llAa 1368 (1387)
T KOG1517|consen 1312 VHEHA-PIIASGSA-QLIKIYSLSG--------------------EQLNIIKYNPGFMGQRIGSVSCLAFHPHRL-LLAA 1368 (1387)
T ss_pred             eccCC-CeeeecCc-ceEEEEecCh--------------------hhhcccccCcccccCcCCCcceeeecchhH-hhhh
Confidence            99999 89999998 9999999984                    33322221       234579999999875 8999


Q ss_pred             eecCCeEEEeeecC
Q 019059          333 LSYDGRVRNHMLEK  346 (346)
Q Consensus       333 ~~~d~~v~vw~~~~  346 (346)
                      |+.|.+|.||..++
T Consensus      1369 G~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1369 GSADSTVSIYSCEK 1382 (1387)
T ss_pred             ccCCceEEEeecCC
Confidence            99999999998764

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.80  E-value=1.5e-17  Score=130.08  Aligned_cols=245  Identities=14%  Similarity=0.195  Sum_probs=169.9

Q ss_pred             eeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEe
Q 019059           61 LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI  140 (346)
Q Consensus        61 ~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  140 (346)
                      ++.--+.|.-+.|..+..+++++.   ..++.|.+|++.         +.+-...+......+.+++|+|||++++.++.
T Consensus        44 lf~cldki~yieW~ads~~ilC~~---yk~~~vqvwsl~---------Qpew~ckIdeg~agls~~~WSPdgrhiL~tse  111 (447)
T KOG4497|consen   44 LFLCLDKIVYIEWKADSCHILCVA---YKDPKVQVWSLV---------QPEWYCKIDEGQAGLSSISWSPDGRHILLTSE  111 (447)
T ss_pred             HHHHHHHhhheeeeccceeeeeee---eccceEEEEEee---------cceeEEEeccCCCcceeeeECCCcceEeeeec
Confidence            333347788899999999999885   678899999998         45555677777889999999999999888888


Q ss_pred             cCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec-C------------------------------
Q 019059          141 DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-E------------------------------  189 (346)
Q Consensus       141 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d------------------------------  189 (346)
                      .+-.|.+|.+.+........      ....+..++|+|+|++.+..+. |                              
T Consensus       112 F~lriTVWSL~t~~~~~~~~------pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~Dltgie  185 (447)
T KOG4497|consen  112 FDLRITVWSLNTQKGYLLPH------PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIE  185 (447)
T ss_pred             ceeEEEEEEeccceeEEecc------cccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCce
Confidence            89999999998654221111      1225678889999887766543 2                              


Q ss_pred             -----CeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCC---------------------
Q 019059          190 -----SSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK---------------------  242 (346)
Q Consensus       190 -----~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---------------------  242 (346)
                           ..+.+||.--.-.+.....+- +..++|+|.++ ++++|+.|+.+|+.+--+.+                     
T Consensus       186 WsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~q-flavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~k  264 (447)
T KOG4497|consen  186 WSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQ-FLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEK  264 (447)
T ss_pred             ECCCCcEEEEecchhhheeeeeeeccceeEEEeccccc-eEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhh
Confidence                 124555543332322333223 89999999998 99999999988855321110                     


Q ss_pred             --------------------------------------cceeeec------CCCcceEEEEeCCCCCcEEEEecC--CCe
Q 019059          243 --------------------------------------APIQELP------GHTHWTWAVCCNPEYDGFILSAGT--DST  276 (346)
Q Consensus       243 --------------------------------------~~~~~~~------~~~~~v~~v~~~~~~~~~l~s~~~--d~~  276 (346)
                                                            ..++.++      ...-.+.-++|++|. .++++-.+  -+.
T Consensus       265 e~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds-~y~aTrnd~~Pna  343 (447)
T KOG4497|consen  265 ETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDS-TYAATRNDKYPNA  343 (447)
T ss_pred             hhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCc-eEEeeecCCCCce
Confidence                                                  0001111      122345678999999 88888664  357


Q ss_pred             EEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeecC
Q 019059          277 VNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLEK  346 (346)
Q Consensus       277 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~~  346 (346)
                      +-+||++.                   .+ ++..-....+|....|+|..+ .|+.+....++++|...+
T Consensus       344 lW~Wdlq~-------------------l~-l~avLiQk~piraf~WdP~~p-rL~vctg~srLY~W~psg  392 (447)
T KOG4497|consen  344 LWLWDLQN-------------------LK-LHAVLIQKHPIRAFEWDPGRP-RLVVCTGKSRLYFWAPSG  392 (447)
T ss_pred             EEEEechh-------------------hh-hhhhhhhccceeEEEeCCCCc-eEEEEcCCceEEEEcCCC
Confidence            99999997                   33 444444566799999999887 455565567799998653

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.80  E-value=1.8e-17  Score=132.85  Aligned_cols=169  Identities=18%  Similarity=0.296  Sum_probs=131.1

Q ss_pred             ccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCe
Q 019059           65 PNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEEN  144 (346)
Q Consensus        65 ~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~  144 (346)
                      ..+|..+.|.++....+++   +|.|..|++|-+............+.+..+..|...|+++.|+|+|. ++++++++|.
T Consensus        13 ~~pv~s~dfq~n~~~~laT---~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~ge-lLASg~D~g~   88 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLAT---AGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGE-LLASGGDGGE   88 (434)
T ss_pred             CCceEEEEeccCcccceec---ccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcC-eeeecCCCce
Confidence            3689999999987734444   58999999999875444433345667778899999999999999999 3555578899


Q ss_pred             EEEEEcCCC------C-----CCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---
Q 019059          145 IFLWSLDCS------N-----KNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---  210 (346)
Q Consensus       145 i~vwd~~~~------~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---  210 (346)
                      |.+|.....      .     ...-.......+|...++.++|+|++.++++++.|..+++||+..++....+. +|   
T Consensus        89 v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~-dh~~y  167 (434)
T KOG1009|consen   89 VFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD-DHEHY  167 (434)
T ss_pred             EEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecc-ccccc
Confidence            999987621      0     11112223345688899999999999999999999999999999998877665 44   


Q ss_pred             eeEEEeCCCCCcEEEEecCCCeEEEEEcc
Q 019059          211 VRNVDYDTKKKHLLVTAADESGIHLWDLR  239 (346)
Q Consensus       211 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  239 (346)
                      +..++|.|-+. .+++-+.|...+.+++.
T Consensus       168 vqgvawDpl~q-yv~s~s~dr~~~~~~~~  195 (434)
T KOG1009|consen  168 VQGVAWDPLNQ-YVASKSSDRHPEGFSAK  195 (434)
T ss_pred             cceeecchhhh-hhhhhccCcccceeeee
Confidence            99999999998 78887888766666654

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=1.9e-18  Score=141.59  Aligned_cols=298  Identities=16%  Similarity=0.219  Sum_probs=223.8

Q ss_pred             eecccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCC--CceEEEEee
Q 019059            9 GYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFD--QRIFSTVFS   86 (346)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~~~~~~   86 (346)
                      -+.|+.+..++..+.++..+..++.|+    .+.++.+|+.......+  ....+|...|....|.|..  +.++.    
T Consensus       135 ~~kL~~H~GcVntV~FN~~Gd~l~SgS----DD~~vv~WdW~~~~~~l--~f~SGH~~NvfQaKFiP~s~d~ti~~----  204 (559)
T KOG1334|consen  135 QKKLNKHKGCVNTVHFNQRGDVLASGS----DDLQVVVWDWVSGSPKL--SFESGHCNNVFQAKFIPFSGDRTIVT----  204 (559)
T ss_pred             hhcccCCCCccceeeecccCceeeccC----ccceEEeehhhccCccc--ccccccccchhhhhccCCCCCcCcee----
Confidence            456677788999999999999988773    67789999988765544  4446899999999998853  34444    


Q ss_pred             cCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccC-
Q 019059           87 TGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSS-  165 (346)
Q Consensus        87 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-  165 (346)
                      ++.||.+++=.+..      ....+....+..|.++|.-++.-|+..+.+++++.|+.+.-+|++.+.....+...... 
T Consensus       205 ~s~dgqvr~s~i~~------t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~  278 (559)
T KOG1334|consen  205 SSRDGQVRVSEILE------TGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADE  278 (559)
T ss_pred             ccccCceeeeeecc------ccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCC
Confidence            47999999988763      11223345677899999999999999998999999999999999987655555433211 


Q ss_pred             CCceeeEEEEeCCCCC-cEEEEecCCeEEEEEccCCCc------cceeeccc--------eeEEEeCCCCCcEEEEecCC
Q 019059          166 GMLHYLSGGAWDPHDV-NAVAATCESSVQFWDLRSMGK------TNSIEHAH--------VRNVDYDTKKKHLLVTAADE  230 (346)
Q Consensus       166 ~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~------~~~~~~~~--------v~~~~~~~~~~~~l~~~~~d  230 (346)
                      ...-..+.++.+|... .+++++.|..+++||.+.-..      +..+.+.|        |++++|+.++..+ ++...|
T Consensus       279 ~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sEl-LaSYnD  357 (559)
T KOG1334|consen  279 KERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSEL-LASYND  357 (559)
T ss_pred             ccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccce-eeeecc
Confidence            1123678899999776 577788899999999875322      23333222        9999999887744 455566


Q ss_pred             CeEEEEEcccC-C----------ccee-eecCCCc--ceEEEE-eCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccc
Q 019059          231 SGIHLWDLRML-K----------APIQ-ELPGHTH--WTWAVC-CNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESL  295 (346)
Q Consensus       231 g~i~i~d~~~~-~----------~~~~-~~~~~~~--~v~~v~-~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  295 (346)
                      -.|++|.-... +          ..+. .+++|..  .|..+- |-|.. .++++|+.=|.|.||+-.+           
T Consensus       358 e~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrs-EyVvSGSDCGhIFiW~K~t-----------  425 (559)
T KOG1334|consen  358 EDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRS-EYVVSGSDCGHIFIWDKKT-----------  425 (559)
T ss_pred             cceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCcc-ceEEecCccceEEEEecch-----------
Confidence            78999843221 1          1222 3778874  455665 45667 9999999999999999998           


Q ss_pred             cCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059          296 VESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~  344 (346)
                              ++.+..+.+-...|+||.=+|.-+ +||+.|-|.-|+||..
T Consensus       426 --------~eii~~MegDr~VVNCLEpHP~~P-vLAsSGid~DVKIWTP  465 (559)
T KOG1334|consen  426 --------GEIIRFMEGDRHVVNCLEPHPHLP-VLASSGIDHDVKIWTP  465 (559)
T ss_pred             --------hHHHHHhhcccceEeccCCCCCCc-hhhccCCccceeeecC
Confidence                    899988888777899999999998 9999999999999975

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=6.7e-18  Score=132.50  Aligned_cols=188  Identities=19%  Similarity=0.324  Sum_probs=140.5

Q ss_pred             EEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCC--CCcEEEEecCCeEEEEEccCCCccceeeccc---
Q 019059          136 KLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPH--DVNAVAATCESSVQFWDLRSMGKTNSIEHAH---  210 (346)
Q Consensus       136 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---  210 (346)
                      ++++...|.|++||..+++....+.     ++...++.++|..+  ...+++++.||+|++||+|.......+....   
T Consensus        43 vav~lSngsv~lyd~~tg~~l~~fk-----~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~  117 (376)
T KOG1188|consen   43 VAVSLSNGSVRLYDKGTGQLLEEFK-----GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSG  117 (376)
T ss_pred             EEEEecCCeEEEEeccchhhhheec-----CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCC
Confidence            6666668999999999866544443     34446777787653  4457888899999999999877655544222   


Q ss_pred             --eeEEEeCCCCCcEEEEecC----CCeEEEEEcccCCcceeee-cCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecC
Q 019059          211 --VRNVDYDTKKKHLLVTAAD----ESGIHLWDLRMLKAPIQEL-PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVS  283 (346)
Q Consensus       211 --v~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~-~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~  283 (346)
                        ..+++.+-.+. ++++|..    +-.|.+||+|+..+++..+ ..|...|++++|+|..+++|++||.||-|.|||+.
T Consensus       118 ~~f~~ld~nck~~-ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~  196 (376)
T KOG1188|consen  118 TPFICLDLNCKKN-IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTK  196 (376)
T ss_pred             CcceEeeccCcCC-eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecC
Confidence              66777765665 7777753    5579999999877656554 47999999999999999999999999999999998


Q ss_pred             CCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          284 TSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      ....+               ..++.++ .|.+.|..+.|...+=..+.+.+......+|+++
T Consensus       197 ~d~Ee---------------DaL~~vi-N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele  242 (376)
T KOG1188|consen  197 KDNEE---------------DALLHVI-NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELE  242 (376)
T ss_pred             CCcch---------------hhHHHhh-cccceeeeeeeecCCcceEEEEEccCceeEEEcc
Confidence            72111               2334444 4667799999998772247778888999999986

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.80  E-value=6.1e-17  Score=126.10  Aligned_cols=233  Identities=15%  Similarity=0.121  Sum_probs=162.0

Q ss_pred             eEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecC-----
Q 019059           68 IWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDE-----  142 (346)
Q Consensus        68 v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d-----  142 (346)
                      ...++|..|...++++     .|...++|+.+         +.+.......+.+.+.-+..---.+++++++|.+     
T Consensus         8 ~lsvs~NQD~ScFava-----~~~Gfriyn~~---------P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~   73 (346)
T KOG2111|consen    8 TLSVSFNQDHSCFAVA-----TDTGFRIYNCD---------PFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYP   73 (346)
T ss_pred             eeEEEEccCCceEEEE-----ecCceEEEecC---------chhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCC
Confidence            3458999988877775     66679999998         3333333322332222222222334456666433     


Q ss_pred             -CeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEcc-CCCccceeecc---c-eeEEEe
Q 019059          143 -ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLR-SMGKTNSIEHA---H-VRNVDY  216 (346)
Q Consensus       143 -~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~---~-v~~~~~  216 (346)
                       +.|.|||-.......++..      ..+|.++.+.++  .+++. ..+.|+||... +.+..+.+...   . ..++.-
T Consensus        74 pNkviIWDD~k~~~i~el~f------~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~  144 (346)
T KOG2111|consen   74 PNKVIIWDDLKERCIIELSF------NSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCP  144 (346)
T ss_pred             CceEEEEecccCcEEEEEEe------ccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecC
Confidence             6799999544333333332      338999998763  34444 46789999988 55555555422   2 555554


Q ss_pred             CCCCCcEEE-EecCCCeEEEEEcccCCc-ceeeecCCCcceEEEEeCCCCCcEEEEecCCCe-EEEEecCCCCCCCCCcc
Q 019059          217 DTKKKHLLV-TAADESGIHLWDLRMLKA-PIQELPGHTHWTWAVCCNPEYDGFILSAGTDST-VNLWLVSTSNHDELPSE  293 (346)
Q Consensus       217 ~~~~~~~l~-~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~  293 (346)
                      ..+.. +|+ -|-.-|.|.|-|+..... +...+..|...|.|++++-+| .++||+|..|+ |||||..+         
T Consensus       145 ~~~k~-~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~G-t~vATaStkGTLIRIFdt~~---------  213 (346)
T KOG2111|consen  145 TSNKS-LLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQG-TLVATASTKGTLIRIFDTED---------  213 (346)
T ss_pred             CCCce-EEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCc-cEEEEeccCcEEEEEEEcCC---------
Confidence            44444 444 456679999999987443 357788999999999999999 99999999995 89999998         


Q ss_pred             cccCCccccccccccccccc--cceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          294 SLVESPNQRANSLLNSYSDY--EDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                                ++++..+...  ...|.+++|||+.. +||+.|+.|++.|+.+.
T Consensus       214 ----------g~~l~E~RRG~d~A~iy~iaFSp~~s-~LavsSdKgTlHiF~l~  256 (346)
T KOG2111|consen  214 ----------GTLLQELRRGVDRADIYCIAFSPNSS-WLAVSSDKGTLHIFSLR  256 (346)
T ss_pred             ----------CcEeeeeecCCchheEEEEEeCCCcc-EEEEEcCCCeEEEEEee
Confidence                      8888777542  34699999999997 89999999999999875

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=2.3e-16  Score=118.48  Aligned_cols=273  Identities=15%  Similarity=0.194  Sum_probs=183.7

Q ss_pred             eccCCCCcceEEEeecccCCCCeEEEEEecCC-------CCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceE
Q 019059           21 DVKADTDHTSFLTGTLSLKEENEVHLLRLSSG-------GTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGA   93 (346)
Q Consensus        21 ~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i   93 (346)
                      ...++|..+-|++|.    ..+.|.+..+...       +.+...-...+|.++|..++|.  ..+|+++     .||.|
T Consensus        15 ~qa~sp~~~~l~agn----~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~-----gdG~V   83 (325)
T KOG0649|consen   15 AQAISPSKQYLFAGN----LFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSG-----GDGLV   83 (325)
T ss_pred             HHhhCCcceEEEEec----CCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeec-----cCceE
Confidence            344566666677763    4577888777631       2233334457899999999998  4567764     56999


Q ss_pred             EEEecCcccCCCCCccceeeee--eecc-----CCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCC
Q 019059           94 AIWQIPELYGQLNSPQLERIAA--LDAH-----VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG  166 (346)
Q Consensus        94 ~vw~~~~~~~~~~~~~~~~~~~--~~~~-----~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~  166 (346)
                      +=|...+..+..   ..+++-.  ..-|     --.|+++...|....+++++ .|+.++-||+++++-..     ...+
T Consensus        84 ~gw~W~E~~es~---~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r-----~~rG  154 (325)
T KOG0649|consen   84 YGWEWNEEEESL---ATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG-GDGVIYQVDLEDGRIQR-----EYRG  154 (325)
T ss_pred             EEeeehhhhhhc---cchhhhhhcCccccCcccCCccceeEeccCCCcEEEec-CCeEEEEEEecCCEEEE-----EEcC
Confidence            999887432211   0111111  1112     24689999999888766666 59999999999875332     2356


Q ss_pred             CceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeecc--------c----eeEEEeCCCCCcEEEEecCCCeEE
Q 019059          167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA--------H----VRNVDYDTKKKHLLVTAADESGIH  234 (346)
Q Consensus       167 ~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--------~----v~~~~~~~~~~~~l~~~~~dg~i~  234 (346)
                      |...+.+++--.....+++|+.||++++||.++++++..+...        +    |.+++-+.+   .+++|+. ..+.
T Consensus       155 HtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed---WlvCGgG-p~ls  230 (325)
T KOG0649|consen  155 HTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED---WLVCGGG-PKLS  230 (325)
T ss_pred             CcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc---eEEecCC-Ccee
Confidence            8889999988555677999999999999999999988776521        1    566665543   6666654 6899


Q ss_pred             EEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccccccc
Q 019059          235 LWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYE  314 (346)
Q Consensus       235 i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (346)
                      +|.++. ..+...+. -...+..+.|..   ..+++++..+.|.-|.+..                    .+-...+..+
T Consensus       231 lwhLrs-se~t~vfp-ipa~v~~v~F~~---d~vl~~G~g~~v~~~~l~G--------------------vl~a~ip~~s  285 (325)
T KOG0649|consen  231 LWHLRS-SESTCVFP-IPARVHLVDFVD---DCVLIGGEGNHVQSYTLNG--------------------VLQANIPVES  285 (325)
T ss_pred             EEeccC-CCceEEEe-cccceeEeeeec---ceEEEeccccceeeeeecc--------------------EEEEeccCCc
Confidence            999997 55666665 456777788865   4578888788899998873                    4444444434


Q ss_pred             ceeeEEEeCCCCCcEEEEeecCCeEEEe
Q 019059          315 DSVYGLAWSSREPWIFASLSYDGRVRNH  342 (346)
Q Consensus       315 ~~v~~~~~~~~~~~~l~s~~~d~~v~vw  342 (346)
                      ...++..|+-.--.++..++..+.+.|+
T Consensus       286 ~~c~s~s~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  286 TACYSASWQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             cceeeecccCCceEEEEecccceeeeee
Confidence            4466666654433356666667777665

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.80  E-value=9.7e-18  Score=139.07  Aligned_cols=245  Identities=11%  Similarity=0.142  Sum_probs=167.0

Q ss_pred             ceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEe-----ecCCCCcEEEEec
Q 019059           67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLW-----WSSGRHDKLVSID  141 (346)
Q Consensus        67 ~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~~~~~~~~  141 (346)
                      .+....++-.+.+|+..     ....+.+|++....     ....++....-......|=+|     .+.+-. ++.+-.
T Consensus       125 ~~~~~~~~~~gd~lcFn-----vg~~lyv~~~~g~~-----~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~d-llIGf~  193 (636)
T KOG2394|consen  125 IVTNTNQSGKGDRLCFN-----VGRELYVYSYRGAA-----DLSKPIDKREYKGTSPTCHDFNSFTATPKGLD-LLIGFT  193 (636)
T ss_pred             ceeeccccCCCCEEEEe-----cCCeEEEEEccCcc-----hhccchhhhcccCCCCceecccccccCCCCcc-eEEeec
Confidence            34455556667777764     33467888876200     011121111111112233334     244444 667766


Q ss_pred             CCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEe-cCCeEEEEEccCC--------------C-----
Q 019059          142 EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT-CESSVQFWDLRSM--------------G-----  201 (346)
Q Consensus       142 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~--------------~-----  201 (346)
                      -|.|++.|... ....++......-....++++.|-|.+..++.++ .+|.+++||..-.              .     
T Consensus       194 tGqvq~idp~~-~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~  272 (636)
T KOG2394|consen  194 TGQVQLIDPIN-FEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAIL  272 (636)
T ss_pred             cCceEEecchh-hHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEe
Confidence            78999888765 2233322222222335899999999777766555 6899999976410              0     


Q ss_pred             ---------ccceeeccc--eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEE
Q 019059          202 ---------KTNSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILS  270 (346)
Q Consensus       202 ---------~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s  270 (346)
                               ++..+....  |+.++|+|||. .||+.+.||.+||||..+ ...+-.++.--+...|++||||| ++|++
T Consensus       273 t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~-~LA~VSqDGfLRvF~fdt-~eLlg~mkSYFGGLLCvcWSPDG-KyIvt  349 (636)
T KOG2394|consen  273 TSKSKKTRNPVARWHIGEGSINEFAFSPDGK-YLATVSQDGFLRIFDFDT-QELLGVMKSYFGGLLCVCWSPDG-KYIVT  349 (636)
T ss_pred             eeeccccCCccceeEeccccccceeEcCCCc-eEEEEecCceEEEeeccH-HHHHHHHHhhccceEEEEEcCCc-cEEEe
Confidence                     111111111  89999999998 899999999999999986 44555555566789999999999 99999


Q ss_pred             ecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCC-------------------------
Q 019059          271 AGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSR-------------------------  325 (346)
Q Consensus       271 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------------------------  325 (346)
                      |++|.-|.||.+..                   .+.+..-++|.++|..|+|.|-                         
T Consensus       350 GGEDDLVtVwSf~e-------------------rRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~  410 (636)
T KOG2394|consen  350 GGEDDLVTVWSFEE-------------------RRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFE  410 (636)
T ss_pred             cCCcceEEEEEecc-------------------ceEEEeccccccceeeEeecccccccccccccccccccccchhcccc
Confidence            99999999999998                   8889999999999999999831                         


Q ss_pred             ----------------------CCcEEEEeecCCeEEEeeec
Q 019059          326 ----------------------EPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       326 ----------------------~~~~l~s~~~d~~v~vw~~~  345 (346)
                                            -.+.|.+++.|..+.+||++
T Consensus       411 ~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlt  452 (636)
T KOG2394|consen  411 IRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLT  452 (636)
T ss_pred             cccCCCCCcCCCcccccccccceEEEeecccccceEEEEecc
Confidence                                  12457889999999999985

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=4.1e-18  Score=137.29  Aligned_cols=193  Identities=12%  Similarity=0.149  Sum_probs=144.5

Q ss_pred             EEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCcc
Q 019059          124 NCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKT  203 (346)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  203 (346)
                      .+++|+.+|.. +.+++.||.+|+|+.........     ...|...|.++.|+||++.|++.+.| ..+||+.+++.++
T Consensus       148 k~vaf~~~gs~-latgg~dg~lRv~~~Ps~~t~l~-----e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~  220 (398)
T KOG0771|consen  148 KVVAFNGDGSK-LATGGTDGTLRVWEWPSMLTILE-----EIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAAL  220 (398)
T ss_pred             eEEEEcCCCCE-eeeccccceEEEEecCcchhhhh-----hHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchh
Confidence            78999999883 77778999999999764432222     23466699999999999999999999 8999999999666


Q ss_pred             ceeecc-c---eeEEEeCCCC---Cc-EEEEecCCCeEEEEEcccCCc----ceeeecCCCcceEEEEeCCCCCcEEEEe
Q 019059          204 NSIEHA-H---VRNVDYDTKK---KH-LLVTAADESGIHLWDLRMLKA----PIQELPGHTHWTWAVCCNPEYDGFILSA  271 (346)
Q Consensus       204 ~~~~~~-~---v~~~~~~~~~---~~-~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~v~~v~~~~~~~~~l~s~  271 (346)
                      ....+. .   ...+.|+.++   .. +++....-+.|+.||+.....    +.++...-...|++++.+++| +++|.|
T Consensus       221 a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dG-kf~AlG  299 (398)
T KOG0771|consen  221 ARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDG-KFLALG  299 (398)
T ss_pred             hhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCC-cEEEEe
Confidence            554421 1   7778887766   32 233333446777777654332    222222234579999999999 999999


Q ss_pred             cCCCeEEEEecCCCCCCCCCcccccCCcccccccccccc-ccccceeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059          272 GTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSY-SDYEDSVYGLAWSSREPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       272 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~  344 (346)
                      +.||.|.|++..+                   -+.++-. ..|...|+.+.|+|+.+ .+++.+.|....|..+
T Consensus       300 T~dGsVai~~~~~-------------------lq~~~~vk~aH~~~VT~ltF~Pdsr-~~~svSs~~~~~v~~l  353 (398)
T KOG0771|consen  300 TMDGSVAIYDAKS-------------------LQRLQYVKEAHLGFVTGLTFSPDSR-YLASVSSDNEAAVTKL  353 (398)
T ss_pred             ccCCcEEEEEece-------------------eeeeEeehhhheeeeeeEEEcCCcC-cccccccCCceeEEEE
Confidence            9999999999987                   4544433 46888999999999986 8888999988888765

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=3.2e-18  Score=137.91  Aligned_cols=196  Identities=12%  Similarity=0.158  Sum_probs=147.0

Q ss_pred             EEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEE
Q 019059           69 WDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLW  148 (346)
Q Consensus        69 ~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vw  148 (346)
                      ..++|+++|..+++    ++.||++|||+++         ....+.....|...|.++.|+|||+. +++-+.| ..+||
T Consensus       148 k~vaf~~~gs~lat----gg~dg~lRv~~~P---------s~~t~l~e~~~~~eV~DL~FS~dgk~-lasig~d-~~~VW  212 (398)
T KOG0771|consen  148 KVVAFNGDGSKLAT----GGTDGTLRVWEWP---------SMLTILEEIAHHAEVKDLDFSPDGKF-LASIGAD-SARVW  212 (398)
T ss_pred             eEEEEcCCCCEeee----ccccceEEEEecC---------cchhhhhhHhhcCccccceeCCCCcE-EEEecCC-ceEEE
Confidence            67899999988888    5899999999988         66777777899999999999999993 3333667 99999


Q ss_pred             EcCCCCCCceeeecccCCCceeeEEEEeCCCC---CcEEEEe--cCCeEEEEEccCCCc-----cceeeccc--eeEEEe
Q 019059          149 SLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD---VNAVAAT--CESSVQFWDLRSMGK-----TNSIEHAH--VRNVDY  216 (346)
Q Consensus       149 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~--~d~~i~i~d~~~~~~-----~~~~~~~~--v~~~~~  216 (346)
                      +.+++.......+.   +-......+.|+.++   .+.+++.  ..+.|+.||+.....     .++....+  |.+++.
T Consensus       213 ~~~~g~~~a~~t~~---~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~V  289 (398)
T KOG0771|consen  213 SVNTGAALARKTPF---SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAV  289 (398)
T ss_pred             EeccCchhhhcCCc---ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEE
Confidence            99988544333322   122356667787665   3333332  356777777654332     11111122  999999


Q ss_pred             CCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          217 DTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       217 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      +++|+ +++.|+.||.|.+++..+.......-+.|...|+.+.|+|+. +++++.+.|....|..+..
T Consensus       290 S~dGk-f~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pds-r~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  290 SDDGK-FLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDS-RYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             cCCCc-EEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCc-CcccccccCCceeEEEEee
Confidence            99998 999999999999999987554444456799999999999999 9999999999999887764

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.79  E-value=5.7e-19  Score=143.77  Aligned_cols=228  Identities=12%  Similarity=0.189  Sum_probs=181.8

Q ss_pred             ceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEE
Q 019059           67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIF  146 (346)
Q Consensus        67 ~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~  146 (346)
                      .-..+.++.+|++|+.    ||..|.|..+|+.         +.+....+. -...|.++.|-.+.+  +++......++
T Consensus       131 GPY~~~ytrnGrhlll----gGrKGHlAa~Dw~---------t~~L~~Ei~-v~Etv~Dv~~LHneq--~~AVAQK~y~y  194 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLL----GGRKGHLAAFDWV---------TKKLHFEIN-VMETVRDVTFLHNEQ--FFAVAQKKYVY  194 (545)
T ss_pred             CCeeeeecCCccEEEe----cCCccceeeeecc---------cceeeeeee-hhhhhhhhhhhcchH--HHHhhhhceEE
Confidence            3456888999999999    5899999999988         666666663 356799999998887  55555688999


Q ss_pred             EEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc--eeEEEeCCCCCcEE
Q 019059          147 LWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKHLL  224 (346)
Q Consensus       147 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--v~~~~~~~~~~~~l  224 (346)
                      |||-.. ....-+..      ...+..+.|.|..-.|++++..|.++--|+.+|+.+..+..+.  +..+.-+|-+. ++
T Consensus       195 vYD~~G-tElHClk~------~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~Na-Vi  266 (545)
T KOG1272|consen  195 VYDNNG-TELHCLKR------HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNA-VI  266 (545)
T ss_pred             EecCCC-cEEeehhh------cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccc-eE
Confidence            999653 22222211      2278889999988888888899999999999999998887555  88888999887 88


Q ss_pred             EEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccc
Q 019059          225 VTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRAN  304 (346)
Q Consensus       225 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  304 (346)
                      -+|...|+|.+|.... ..|+..+..|.++|.+|++.++| +|++|.+.|..++|||++.                   .
T Consensus       267 h~GhsnGtVSlWSP~s-kePLvKiLcH~g~V~siAv~~~G-~YMaTtG~Dr~~kIWDlR~-------------------~  325 (545)
T KOG1272|consen  267 HLGHSNGTVSLWSPNS-KEPLVKILCHRGPVSSIAVDRGG-RYMATTGLDRKVKIWDLRN-------------------F  325 (545)
T ss_pred             EEcCCCceEEecCCCC-cchHHHHHhcCCCcceEEECCCC-cEEeecccccceeEeeecc-------------------c
Confidence            9999999999999887 66888888899999999999999 9999999999999999998                   4


Q ss_pred             ccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEee
Q 019059          305 SLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHM  343 (346)
Q Consensus       305 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~  343 (346)
                      ..+.++.. ..+...+++|..|  +| +.+....|.||.
T Consensus       326 ~ql~t~~t-p~~a~~ls~Sqkg--lL-A~~~G~~v~iw~  360 (545)
T KOG1272|consen  326 YQLHTYRT-PHPASNLSLSQKG--LL-ALSYGDHVQIWK  360 (545)
T ss_pred             cccceeec-CCCcccccccccc--ce-eeecCCeeeeeh
Confidence            55554443 3456788898765  34 445556788884

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.78  E-value=4.6e-17  Score=130.04  Aligned_cols=253  Identities=15%  Similarity=0.164  Sum_probs=181.6

Q ss_pred             eccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEec
Q 019059           62 FSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSID  141 (346)
Q Consensus        62 ~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  141 (346)
                      ......|..++|.-+++.=+...  .+.+..+....+.+..-   .+....+........+|..++.. ++.  ++++-.
T Consensus        52 ~~~~~ris~l~~~~d~~tevl~~--r~~~~~~~~~~~~E~~~---~s~~~~~~~~~l~~~~I~gl~~~-dg~--Litc~~  123 (412)
T KOG3881|consen   52 VDELDRISSLLFGVDGETEVLNA--RSADDDLPKFVIEEFEI---SSSLDDAKTVSLGTKSIKGLKLA-DGT--LITCVS  123 (412)
T ss_pred             cchhhhhhhheeecCCceeEeec--cccCcccccccccCCcc---ccccccccccccccccccchhhc-CCE--EEEEec
Confidence            34456788889976554322221  24555677777662111   00111122334456677777765 455  777767


Q ss_pred             CCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEE-EecC--CeEEEEEccCCCccceeeccc--------
Q 019059          142 EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVA-ATCE--SSVQFWDLRSMGKTNSIEHAH--------  210 (346)
Q Consensus       142 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d--~~i~i~d~~~~~~~~~~~~~~--------  210 (346)
                      +|.+.+|....+.........-..+  ..+..+.-++..+++++ |+..  ..+.+||+.+.+++..-....        
T Consensus       124 sG~l~~~~~k~~d~hss~l~~la~g--~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrV  201 (412)
T KOG3881|consen  124 SGNLQVRHDKSGDLHSSKLIKLATG--PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRV  201 (412)
T ss_pred             CCcEEEEeccCCccccccceeeecC--CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCcccccee
Confidence            8999999988443211111111111  25677777777777776 6666  789999999875543322111        


Q ss_pred             ---eeEEEeCCCC-CcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCC
Q 019059          211 ---VRNVDYDTKK-KHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSN  286 (346)
Q Consensus       211 ---v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~  286 (346)
                         ++++.|-+.. .+.|+++..-+.+++||.+..++|+..+.--+.+++++...|.+ +++++|..-+.+..||++.  
T Consensus       202 PvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~g-n~Iy~gn~~g~l~~FD~r~--  278 (412)
T KOG3881|consen  202 PVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSG-NFIYTGNTKGQLAKFDLRG--  278 (412)
T ss_pred             eeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCC-cEEEEecccchhheecccC--
Confidence               7888888761 24899999999999999999889999999889999999999999 9999999999999999998  


Q ss_pred             CCCCCcccccCCccccccccccc-cccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          287 HDELPSESLVESPNQRANSLLNS-YSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                                       ++.... +.+-.+.|++|..+|..+ +++++|-|+.|||+|++
T Consensus       279 -----------------~kl~g~~~kg~tGsirsih~hp~~~-~las~GLDRyvRIhD~k  320 (412)
T KOG3881|consen  279 -----------------GKLLGCGLKGITGSIRSIHCHPTHP-VLASCGLDRYVRIHDIK  320 (412)
T ss_pred             -----------------ceeeccccCCccCCcceEEEcCCCc-eEEeeccceeEEEeecc
Confidence                             666665 888899999999999998 99999999999999986

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.78  E-value=5.7e-19  Score=153.38  Aligned_cols=237  Identities=17%  Similarity=0.258  Sum_probs=187.5

Q ss_pred             eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEE
Q 019059           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV  138 (346)
Q Consensus        59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  138 (346)
                      +.+.+|...|.|+.|...|.++++    |+.|..++||..+         +..++..+++|.+.|+.++.+..+. ++++
T Consensus       184 krLlgH~naVyca~fDrtg~~Iit----gsdd~lvKiwS~e---------t~~~lAs~rGhs~ditdlavs~~n~-~iaa  249 (1113)
T KOG0644|consen  184 KRLLGHRNAVYCAIFDRTGRYIIT----GSDDRLVKIWSME---------TARCLASCRGHSGDITDLAVSSNNT-MIAA  249 (1113)
T ss_pred             HHHHhhhhheeeeeeccccceEee----cCccceeeeeecc---------chhhhccCCCCccccchhccchhhh-hhhh
Confidence            557899999999999999999998    5799999999988         7889999999999999999988776 3555


Q ss_pred             EecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCcc-----ceeeccc-ee
Q 019059          139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKT-----NSIEHAH-VR  212 (346)
Q Consensus       139 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-----~~~~~~~-v~  212 (346)
                      ++.|..|++|.+..+.....+     .+|...|++++|+|-.    +.+.||++++||.+-....     ..+.... +.
T Consensus       250 aS~D~vIrvWrl~~~~pvsvL-----rghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~  320 (1113)
T KOG0644|consen  250 ASNDKVIRVWRLPDGAPVSVL-----RGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVD  320 (1113)
T ss_pred             cccCceEEEEecCCCchHHHH-----hccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCccccccee
Confidence            688999999999877644333     3577799999999943    7778999999999821111     1112122 77


Q ss_pred             EEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCc
Q 019059          213 NVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPS  292 (346)
Q Consensus       213 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  292 (346)
                      ++-|...+. -+++++.|+.-..|.+...       ..+...+.-+.++.+-..+.+++-.+..+.+|++.+        
T Consensus       321 s~~~~~~~~-~f~Tgs~d~ea~n~e~~~l-------~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~--------  384 (1113)
T KOG0644|consen  321 SILFENNGD-RFLTGSRDGEARNHEFEQL-------AWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYT--------  384 (1113)
T ss_pred             eeecccccc-ccccccCCcccccchhhHh-------hhhccceEEEeccccccccceeeeeeeEeeeeeccc--------
Confidence            888888887 8999999998888876531       122333333333334335677777788999999998        


Q ss_pred             ccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          293 ESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                                 +.+.+.+.+|...+..+.++|.++++..+++.||...|||+-
T Consensus       385 -----------g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~  426 (1113)
T KOG0644|consen  385 -----------GQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIW  426 (1113)
T ss_pred             -----------chhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecc
Confidence                       899999999999999999999998888999999999999974

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.78  E-value=1.9e-16  Score=137.94  Aligned_cols=239  Identities=13%  Similarity=0.133  Sum_probs=153.9

Q ss_pred             CeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCC
Q 019059           42 NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVG  121 (346)
Q Consensus        42 ~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~  121 (346)
                      .++++++++..+.    ..+..+...+...+|+|+|+.|+.+... +.+..|.+|++..       ...+.+..+   .+
T Consensus       179 ~~l~~~d~dg~~~----~~lt~~~~~~~~p~wSPDG~~la~~s~~-~g~~~i~i~dl~~-------G~~~~l~~~---~~  243 (429)
T PRK03629        179 YELRVSDYDGYNQ----FVVHRSPQPLMSPAWSPDGSKLAYVTFE-SGRSALVIQTLAN-------GAVRQVASF---PR  243 (429)
T ss_pred             eeEEEEcCCCCCC----EEeecCCCceeeeEEcCCCCEEEEEEec-CCCcEEEEEECCC-------CCeEEccCC---CC
Confidence            4677776665432    2233466789999999999998876422 2345789999871       122233333   33


Q ss_pred             ceEEEEeecCCCCcEEEEecCC--eEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecC-C--eEEEEE
Q 019059          122 KINCVLWWSSGRHDKLVSIDEE--NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE-S--SVQFWD  196 (346)
Q Consensus       122 ~i~~~~~~~~~~~~~~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~--~i~i~d  196 (346)
                      .+..+.|+|||+.++++...++  .|++||+.++.. ..+..     +...+....|+|+++.|+.++.+ +  .|+++|
T Consensus       244 ~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~-~~lt~-----~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d  317 (429)
T PRK03629        244 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTD-----GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVN  317 (429)
T ss_pred             CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCE-EEccC-----CCCCcCceEECCCCCEEEEEeCCCCCceEEEEE
Confidence            3456899999997666554444  588999986542 22211     12256788999999998877753 3  455567


Q ss_pred             ccCCCccceeeccc-eeEEEeCCCCCcEEEEecCC--CeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecC
Q 019059          197 LRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADE--SGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGT  273 (346)
Q Consensus       197 ~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~  273 (346)
                      +.+++.......+. .....|+|+|+.+++++..+  ..|.+||+....  ...+.. ........|+|+| ..|+.++.
T Consensus       318 ~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~--~~~Lt~-~~~~~~p~~SpDG-~~i~~~s~  393 (429)
T PRK03629        318 INGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG--VQVLTD-TFLDETPSIAPNG-TMVIYSSS  393 (429)
T ss_pred             CCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCC--eEEeCC-CCCCCCceECCCC-CEEEEEEc
Confidence            76664432222223 67899999998444444443  358888987532  344442 2234567899999 88887777


Q ss_pred             CCe---EEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCC
Q 019059          274 DST---VNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSR  325 (346)
Q Consensus       274 d~~---i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  325 (346)
                      ++.   +.++++.                    +.....+..|.+.+...+|+|-
T Consensus       394 ~~~~~~l~~~~~~--------------------G~~~~~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        394 QGMGSVLNLVSTD--------------------GRFKARLPATDGQVKFPAWSPY  428 (429)
T ss_pred             CCCceEEEEEECC--------------------CCCeEECccCCCCcCCcccCCC
Confidence            663   6677775                    4555667778888899999983

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=2.3e-17  Score=137.39  Aligned_cols=214  Identities=16%  Similarity=0.189  Sum_probs=156.4

Q ss_pred             eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeee-eccCCceEEEEeecCCC-CcE
Q 019059           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL-DAHVGKINCVLWWSSGR-HDK  136 (346)
Q Consensus        59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~-~~~  136 (346)
                      ..+.+|++.|+++.|+.+|..|++    |+.|..+.|||.-         ..++++.+ .+|...|.++.|-|... .++
T Consensus        44 ~eL~GH~GCVN~LeWn~dG~lL~S----GSDD~r~ivWd~~---------~~KllhsI~TgHtaNIFsvKFvP~tnnriv  110 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNADGELLAS----GSDDTRLIVWDPF---------EYKLLHSISTGHTANIFSVKFVPYTNNRIV  110 (758)
T ss_pred             hhhccccceecceeecCCCCEEee----cCCcceEEeecch---------hcceeeeeecccccceeEEeeeccCCCeEE
Confidence            567899999999999999998888    5899999999986         56666665 58999999999998643 455


Q ss_pred             EEEecCCeEEEEEcCCCCCC-----ceeeecccCCCceeeEEEEeCCCCCc-EEEEecCCeEEEEEccCCCccc------
Q 019059          137 LVSIDEENIFLWSLDCSNKN-----AQVQSKQSSGMLHYLSGGAWDPHDVN-AVAATCESSVQFWDLRSMGKTN------  204 (346)
Q Consensus       137 ~~~~~d~~i~vwd~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~------  204 (346)
                      ++++.|..|+++|+...+..     ......-...|...|..++-.|++.+ +.+++.||+|+-+|++....-.      
T Consensus       111 ~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~  190 (758)
T KOG1310|consen  111 LSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCP  190 (758)
T ss_pred             EeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccccc
Confidence            66677999999999853211     11122223457778888999999854 6678899999999999643111      


Q ss_pred             -eee--ccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCc-----------------ceeeec-CCC--------
Q 019059          205 -SIE--HAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA-----------------PIQELP-GHT--------  252 (346)
Q Consensus       205 -~~~--~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----------------~~~~~~-~~~--------  252 (346)
                       .+.  ...   ..++..+|..+++|++|+.|-..++||.|...+                 ++..+. +|.        
T Consensus       191 ~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~  270 (758)
T KOG1310|consen  191 SILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLD  270 (758)
T ss_pred             HHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccc
Confidence             111  011   789999999999999999999999999653211                 122221 111        


Q ss_pred             ---cceEEEEeCCCCCcEEEEecCCCeEEEEecCCCC
Q 019059          253 ---HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSN  286 (346)
Q Consensus       253 ---~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~  286 (346)
                         ..++-+.|+|+|..+|++-+.+ .|+++|+...+
T Consensus       271 ~~~~~~t~vtfnpNGtElLvs~~gE-hVYlfdvn~~~  306 (758)
T KOG1310|consen  271 RYITCCTYVTFNPNGTELLVSWGGE-HVYLFDVNEDK  306 (758)
T ss_pred             cceeeeEEEEECCCCcEEEEeeCCe-EEEEEeecCCC
Confidence               1245678999997777776655 69999998743

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.77  E-value=8.5e-15  Score=116.69  Aligned_cols=296  Identities=14%  Similarity=0.159  Sum_probs=202.2

Q ss_pred             ceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCc
Q 019059           29 TSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSP  108 (346)
Q Consensus        29 ~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~  108 (346)
                      ....+|+.+......|++|++....+.+....+..+.+.++-|+|+|+.++|.++. ..+.++.|..|.++...     .
T Consensus         3 ~~~YiGtyT~~~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~-~~~~~ggvaay~iD~~~-----G   76 (346)
T COG2706           3 QTVYIGTYTKRESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVN-EPGEEGGVAAYRIDPDD-----G   76 (346)
T ss_pred             eEEEEeeecccCCCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEE-ecCCcCcEEEEEEcCCC-----C
Confidence            45678888888889999999997777777777888889999999999998888875 23447889889887311     1


Q ss_pred             cceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeee-ccc--C-CC----ceeeEEEEeCCCC
Q 019059          109 QLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQS-KQS--S-GM----LHYLSGGAWDPHD  180 (346)
Q Consensus       109 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~-~~~--~-~~----~~~v~~~~~~~~~  180 (346)
                      ....+........+-+.++++++++.++.+....|.|.++-++.......... ..+  . .|    ..-+....+.|++
T Consensus        77 ~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~  156 (346)
T COG2706          77 RLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG  156 (346)
T ss_pred             eEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCC
Confidence            22333222223334488999999997555555679999999976443332211 111  1 11    1127778899999


Q ss_pred             CcEEEEec-CCeEEEEEccCCCccc----eeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecC----
Q 019059          181 VNAVAATC-ESSVQFWDLRSMGKTN----SIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG----  250 (346)
Q Consensus       181 ~~l~~~~~-d~~i~i~d~~~~~~~~----~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----  250 (346)
                      +++++..- -..|.+|++..++...    .++++. .+.|.|+|+++...++.--+++|-+|........+..++.    
T Consensus       157 ~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tl  236 (346)
T COG2706         157 RYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTL  236 (346)
T ss_pred             CEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccC
Confidence            99988863 4579999999776432    223333 9999999999966666777899999998864333333332    


Q ss_pred             -----CCcceEEEEeCCCCCcEEEEecC-CCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCC
Q 019059          251 -----HTHWTWAVCCNPEYDGFILSAGT-DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS  324 (346)
Q Consensus       251 -----~~~~v~~v~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  324 (346)
                           -..+...|..+|+| ++|+++.. ..+|.+|.+......               -..+.....+....+++.++|
T Consensus       237 P~dF~g~~~~aaIhis~dG-rFLYasNRg~dsI~~f~V~~~~g~---------------L~~~~~~~teg~~PR~F~i~~  300 (346)
T COG2706         237 PEDFTGTNWAAAIHISPDG-RFLYASNRGHDSIAVFSVDPDGGK---------------LELVGITPTEGQFPRDFNINP  300 (346)
T ss_pred             ccccCCCCceeEEEECCCC-CEEEEecCCCCeEEEEEEcCCCCE---------------EEEEEEeccCCcCCccceeCC
Confidence                 23567789999999 88887765 448888887751000               111222223444478999999


Q ss_pred             CCCcEEEEeecCCeEEEeeecC
Q 019059          325 REPWIFASLSYDGRVRNHMLEK  346 (346)
Q Consensus       325 ~~~~~l~s~~~d~~v~vw~~~~  346 (346)
                      .++.++|+.-.+..|.+|.+++
T Consensus       301 ~g~~Liaa~q~sd~i~vf~~d~  322 (346)
T COG2706         301 SGRFLIAANQKSDNITVFERDK  322 (346)
T ss_pred             CCCEEEEEccCCCcEEEEEEcC
Confidence            9986666666677799988753

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.77  E-value=3.8e-17  Score=124.03  Aligned_cols=258  Identities=17%  Similarity=0.242  Sum_probs=173.0

Q ss_pred             ecccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCC
Q 019059           10 YGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGE   89 (346)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~   89 (346)
                      |.|..+...+.++.++.+ .|+..|.    .-+.+.+|.+...-.....+  ..|...|+.+.--|++ .+.+    -|.
T Consensus         8 fvLRp~~~~v~s~~fqa~-~rL~sg~----~~G~V~~w~lqt~r~~~~~r--~~g~~~it~lq~~p~d-~l~t----qgR   75 (323)
T KOG0322|consen    8 FVLRPHSSSVTSVLFQAN-ERLMSGL----SVGIVKMWVLQTERDLPLIR--LFGRLFITNLQSIPND-SLDT----QGR   75 (323)
T ss_pred             eEeccccchheehhhccc-hhhhccc----ccceEEEEEeecCccchhhh--hhccceeeceeecCCc-chhh----cCC
Confidence            444444444555554433 3455443    45789999998764332222  1366789999988874 4555    379


Q ss_pred             cceEEEEecCcc---------------------cCCCCC-----------------ccceeee--ee----eccCCceEE
Q 019059           90 SYGAAIWQIPEL---------------------YGQLNS-----------------PQLERIA--AL----DAHVGKINC  125 (346)
Q Consensus        90 d~~i~vw~~~~~---------------------~~~~~~-----------------~~~~~~~--~~----~~~~~~i~~  125 (346)
                      |..+.+|++...                     .+.+..                 .-+....  ..    ....+.+.|
T Consensus        76 d~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc  155 (323)
T KOG0322|consen   76 DPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMC  155 (323)
T ss_pred             CceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceee
Confidence            999999998741                     000000                 0000000  00    112345666


Q ss_pred             EEee-cCCCCcEE-EEecCCeEEEEEcCCCCCCceeee-----cccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEcc
Q 019059          126 VLWW-SSGRHDKL-VSIDEENIFLWSLDCSNKNAQVQS-----KQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLR  198 (346)
Q Consensus       126 ~~~~-~~~~~~~~-~~~~d~~i~vwd~~~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~  198 (346)
                      ..|. .++.++++ ++.++|.+.+||+.++.....+..     .....|..++.++.+.+.-..=+.++.+..+..|.+.
T Consensus       156 ~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~  235 (323)
T KOG0322|consen  156 QDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLN  235 (323)
T ss_pred             eeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeec
Confidence            6653 33444444 456799999999997633322211     1234577799999998776667777777888899887


Q ss_pred             CC--Cc--cceeeccc--eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEec
Q 019059          199 SM--GK--TNSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG  272 (346)
Q Consensus       199 ~~--~~--~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~  272 (346)
                      ..  ..  ...+...+  +..+..-||++ ++++++-|+.||+|..++ ..|+..++-|...|++++|+|+. .++|+++
T Consensus       236 ~s~gslq~~~e~~lknpGv~gvrIRpD~K-IlATAGWD~RiRVyswrt-l~pLAVLkyHsagvn~vAfspd~-~lmAaas  312 (323)
T KOG0322|consen  236 HSTGSLQIRKEITLKNPGVSGVRIRPDGK-ILATAGWDHRIRVYSWRT-LNPLAVLKYHSAGVNAVAFSPDC-ELMAAAS  312 (323)
T ss_pred             cccCcccccceEEecCCCccceEEccCCc-EEeecccCCcEEEEEecc-CCchhhhhhhhcceeEEEeCCCC-chhhhcc
Confidence            43  21  12222223  99999999998 999999999999999998 55899999999999999999998 8999999


Q ss_pred             CCCeEEEEec
Q 019059          273 TDSTVNLWLV  282 (346)
Q Consensus       273 ~d~~i~iwd~  282 (346)
                      .|++|.+|++
T Consensus       313 kD~rISLWkL  322 (323)
T KOG0322|consen  313 KDARISLWKL  322 (323)
T ss_pred             CCceEEeeec
Confidence            9999999986

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=5.7e-16  Score=122.80  Aligned_cols=248  Identities=13%  Similarity=0.169  Sum_probs=158.0

Q ss_pred             cceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeee-ccCCceEEEEeecCCCCcEEEEecCCe
Q 019059           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD-AHVGKINCVLWWSSGRHDKLVSIDEEN  144 (346)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~d~~  144 (346)
                      -.+..++|++.--.++++    ..|-.|++|+-.         . .....++ .....|.|++|-|.+...+++++ .+-
T Consensus        99 ~dlr~~aWhqH~~~fava----~nddvVriy~ks---------s-t~pt~Lks~sQrnvtclawRPlsaselavgC-r~g  163 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVA----TNDDVVRIYDKS---------S-TCPTKLKSVSQRNVTCLAWRPLSASELAVGC-RAG  163 (445)
T ss_pred             cceeeEeechhhhhhhhh----ccCcEEEEeccC---------C-CCCceecchhhcceeEEEeccCCcceeeeee-cce
Confidence            456789999865555554    588899999976         2 3333332 23568999999998877566666 578


Q ss_pred             EEEEEcCCCCCCcee---------eecccCCCceeeEEEEeCCCCCcEEEEe-cCCeEEEEEccCCCccceeeccc--ee
Q 019059          145 IFLWSLDCSNKNAQV---------QSKQSSGMLHYLSGGAWDPHDVNAVAAT-CESSVQFWDLRSMGKTNSIEHAH--VR  212 (346)
Q Consensus       145 i~vwd~~~~~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~--v~  212 (346)
                      |.+|...........         .....++| ..|++++|++||..+++++ .|..|.|||..++....-...+-  +.
T Consensus       164 IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~s  242 (445)
T KOG2139|consen  164 ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFS  242 (445)
T ss_pred             eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCcee
Confidence            999987632211111         11112344 5899999999999999988 47899999999988665543233  99


Q ss_pred             EEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCc
Q 019059          213 NVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPS  292 (346)
Q Consensus       213 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  292 (346)
                      -+.|+||+. .|+++.-|+..++|...+.....+-.. ..+.|..-+|+|+|..+|++.+..  -++|.+..........
T Consensus       243 lLkwSPdgd-~lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~sgs--p~lysl~f~~~~~~~~  318 (445)
T KOG2139|consen  243 LLKWSPDGD-VLFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACSGS--PRLYSLTFDGEDSVFL  318 (445)
T ss_pred             eEEEcCCCC-EEEEecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEcCC--ceEEEEeecCCCcccc
Confidence            999999999 788888999999996554332333233 345899999999996666666544  4566665422211111


Q ss_pred             c--cccCCcccccccccccccc---ccceeeEEEeCCCCCcEEEEee
Q 019059          293 E--SLVESPNQRANSLLNSYSD---YEDSVYGLAWSSREPWIFASLS  334 (346)
Q Consensus       293 ~--~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~s~~  334 (346)
                      .  +.........-..+....+   -.+.+.+++|+|.|. +||+.-
T Consensus       319 ~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGe-yLav~f  364 (445)
T KOG2139|consen  319 RPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGE-YLAVIF  364 (445)
T ss_pred             CcccceeeeeeccchhhhhhcCcccccCccceeeECCCCC-EEEEEE
Confidence            0  0000000000111111111   134688999999998 566544

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.76  E-value=6.1e-17  Score=134.49  Aligned_cols=198  Identities=17%  Similarity=0.232  Sum_probs=152.1

Q ss_pred             CCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCC
Q 019059           88 GESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGM  167 (346)
Q Consensus        88 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~  167 (346)
                      ++||.+.+-+-.          ++..+.+..|.+.+.+-.|+|+|.. ++++++||.|++|.-.. - ......+    .
T Consensus        82 s~DGkf~il~k~----------~rVE~sv~AH~~A~~~gRW~~dGtg-Llt~GEDG~iKiWSrsG-M-LRStl~Q----~  144 (737)
T KOG1524|consen   82 SNDGRFVILNKS----------ARVERSISAHAAAISSGRWSPDGAG-LLTAGEDGVIKIWSRSG-M-LRSTVVQ----N  144 (737)
T ss_pred             cCCceEEEeccc----------chhhhhhhhhhhhhhhcccCCCCce-eeeecCCceEEEEeccc-h-HHHHHhh----c
Confidence            689999888753          5666678899999999999999996 77888999999998542 2 2222221    1


Q ss_pred             ceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcc
Q 019059          168 LHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAP  244 (346)
Q Consensus       168 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  244 (346)
                      ..+|++++|.|+.+.++.+. .+.+.+=.+.....+.... +|   |.++.|++..+ ++++|++|-..++||..  +.+
T Consensus       145 ~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~Wk-AHDGiiL~~~W~~~s~-lI~sgGED~kfKvWD~~--G~~  219 (737)
T KOG1524|consen  145 EESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWR-AHDGLVLSLSWSTQSN-IIASGGEDFRFKIWDAQ--GAN  219 (737)
T ss_pred             CceeEEEEECCCCCceEEec-CCeEEEeecccccceeEEe-ccCcEEEEeecCcccc-ceeecCCceeEEeeccc--Ccc
Confidence            23899999999988776653 4667777777666666666 56   99999999998 99999999999999976  567


Q ss_pred             eeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCC
Q 019059          245 IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS  324 (346)
Q Consensus       245 ~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  324 (346)
                      +..-..|..+|++++|+|+  ..++.+|. +++|+   ..                           ...+.|..++||+
T Consensus       220 Lf~S~~~ey~ITSva~npd--~~~~v~S~-nt~R~---~~---------------------------p~~GSifnlsWS~  266 (737)
T KOG1524|consen  220 LFTSAAEEYAITSVAFNPE--KDYLLWSY-NTARF---SS---------------------------PRVGSIFNLSWSA  266 (737)
T ss_pred             cccCChhccceeeeeeccc--cceeeeee-eeeee---cC---------------------------CCccceEEEEEcC
Confidence            7777889999999999998  45555553 23441   11                           2345699999999


Q ss_pred             CCCcEEEEeecCCeEEE
Q 019059          325 REPWIFASLSYDGRVRN  341 (346)
Q Consensus       325 ~~~~~l~s~~~d~~v~v  341 (346)
                      ||. .++.|...|.+.+
T Consensus       267 DGT-Q~a~gt~~G~v~~  282 (737)
T KOG1524|consen  267 DGT-QATCGTSTGQLIV  282 (737)
T ss_pred             CCc-eeeccccCceEEE
Confidence            996 7888877777654

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.75  E-value=6.5e-17  Score=134.31  Aligned_cols=226  Identities=12%  Similarity=0.246  Sum_probs=155.9

Q ss_pred             ccccceEEeeecCCCCceEEEEeecCCcceEEEEe-cCcccCCCCCccceeeeeeeccCCceEEEEe-e------cCCCC
Q 019059           63 SHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQ-IPELYGQLNSPQLERIAALDAHVGKINCVLW-W------SSGRH  134 (346)
Q Consensus        63 ~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~------~~~~~  134 (346)
                      .|...|.++.|+.....+.++     +|..+.+|. +..          .....+.-...-+....+ -      ..+..
T Consensus        12 r~~e~vc~v~w~~~eei~~~~-----dDh~~~~~~~~~~----------~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d   76 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVS-----DDHQIFKWSDVSR----------DSVEVAKLPDDFVPTDMHLGGRSSGGGKGSD   76 (737)
T ss_pred             ccceeEEeecccccceEEEec-----cCceEEEeecccc----------hhhhhhhCCcccCCccccccccccCCCCCcc
Confidence            567778899999877666663     565665554 431          111111111111111100 0      01222


Q ss_pred             cEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc-eeE
Q 019059          135 DKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRN  213 (346)
Q Consensus       135 ~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-v~~  213 (346)
                      .++.++.||.+.+.+-.. + ....    -..|...+.+-.|+|+|.-|++++.||.|++|.....-.....+.+. |+|
T Consensus        77 ~~~i~s~DGkf~il~k~~-r-VE~s----v~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c  150 (737)
T KOG1524|consen   77 TLLICSNDGRFVILNKSA-R-VERS----ISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRC  150 (737)
T ss_pred             eEEEEcCCceEEEecccc-h-hhhh----hhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEE
Confidence            467777799988876432 1 1111    23466688999999999999999999999999855332222222233 999


Q ss_pred             EEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcc
Q 019059          214 VDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSE  293 (346)
Q Consensus       214 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  293 (346)
                      ++|.|+.+.++++.+  +.+.+=-+.. ...+...+.|.+-|.++.|++.. .++++|++|-..+|||..          
T Consensus       151 ~~W~p~S~~vl~c~g--~h~~IKpL~~-n~k~i~WkAHDGiiL~~~W~~~s-~lI~sgGED~kfKvWD~~----------  216 (737)
T KOG1524|consen  151 ARWAPNSNSIVFCQG--GHISIKPLAA-NSKIIRWRAHDGLVLSLSWSTQS-NIIASGGEDFRFKIWDAQ----------  216 (737)
T ss_pred             EEECCCCCceEEecC--CeEEEeeccc-ccceeEEeccCcEEEEeecCccc-cceeecCCceeEEeeccc----------
Confidence            999999986776654  4666666664 33566788999999999999999 999999999999999998          


Q ss_pred             cccCCccccccccccccccccceeeEEEeCCCCCcEEEEeec
Q 019059          294 SLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSY  335 (346)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  335 (346)
                                +..++.-..|.-+|++++|+|+ . .++.+|.
T Consensus       217 ----------G~~Lf~S~~~ey~ITSva~npd-~-~~~v~S~  246 (737)
T KOG1524|consen  217 ----------GANLFTSAAEEYAITSVAFNPE-K-DYLLWSY  246 (737)
T ss_pred             ----------CcccccCChhccceeeeeeccc-c-ceeeeee
Confidence                      5888888889999999999998 4 5666664

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=4.9e-15  Score=129.99  Aligned_cols=294  Identities=13%  Similarity=0.133  Sum_probs=199.9

Q ss_pred             eccCCCCcceEEEeecccCCCCeEEEEEecC-CCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecC
Q 019059           21 DVKADTDHTSFLTGTLSLKEENEVHLLRLSS-GGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIP   99 (346)
Q Consensus        21 ~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~   99 (346)
                      ....++.+..++.|.    .+|+|.+|+=.. +.....+..+.-|.++|.+++|+++|.+|++    ||..+.+-+|.++
T Consensus       210 ~~~~spn~~~~Aa~d----~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlS----GG~E~VLv~Wq~~  281 (792)
T KOG1963|consen  210 CVALSPNERYLAAGD----SDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLS----GGREGVLVLWQLE  281 (792)
T ss_pred             eEEeccccceEEEec----cCCcEEEEeccccccccccceEEEecccccceeEEecCCceEee----cccceEEEEEeec
Confidence            344555665566553    468899997544 4555667788889999999999999999999    5899999999998


Q ss_pred             cccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecc------cCCCceeeEE
Q 019059          100 ELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQ------SSGMLHYLSG  173 (346)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~------~~~~~~~v~~  173 (346)
                               +.+ .+-+..-.++|..+.++||+.. ......|+.|.+....+......+....      ......-.+.
T Consensus       282 ---------T~~-kqfLPRLgs~I~~i~vS~ds~~-~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~  350 (792)
T KOG1963|consen  282 ---------TGK-KQFLPRLGSPILHIVVSPDSDL-YSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTG  350 (792)
T ss_pred             ---------CCC-cccccccCCeeEEEEEcCCCCe-EEEEecCceEEEEeccchhhhhhccCccCCCcccccccccccee
Confidence                     333 3445556789999999999994 5555679999998875432211111110      1223445678


Q ss_pred             EEeCCCCCcEEEEecCCeEEEEEccCCCccceeec-------c----c--eeEEEeCCCCCcEEEEec--------CC--
Q 019059          174 GAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH-------A----H--VRNVDYDTKKKHLLVTAA--------DE--  230 (346)
Q Consensus       174 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-------~----~--v~~~~~~~~~~~~l~~~~--------~d--  230 (346)
                      ++++|.-+.++..+..+.|.+||+-+.+.+..+..       +    +  ++.++.+..|. +++|.-        .|  
T Consensus       351 ~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs-~maT~E~~~d~~~~~~~e  429 (792)
T KOG1963|consen  351 VSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGS-WMATLEARIDKFNFFDGE  429 (792)
T ss_pred             EEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccce-EEEEeeeeehhhhccCce
Confidence            89999777788888999999999998876655431       1    1  77888888876 677643        23  


Q ss_pred             CeEEEEEcccCCc--c--eeeecCCCcceEEEEeCC-CCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccc
Q 019059          231 SGIHLWDLRMLKA--P--IQELPGHTHWTWAVCCNP-EYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANS  305 (346)
Q Consensus       231 g~i~i~d~~~~~~--~--~~~~~~~~~~v~~v~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  305 (346)
                      -.+++|-.....+  .  ......|...+...++.+ .....+++++.||.++||-+...+....         ....+.
T Consensus       430 ~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k---------~~s~W~  500 (792)
T KOG1963|consen  430 VSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYK---------KSSNWT  500 (792)
T ss_pred             EEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCc---------CccceE
Confidence            3578887653221  1  122346776666555544 3323899999999999998854111100         001133


Q ss_pred             cccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          306 LLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       306 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      +...-.-|..++++.+|+.||.  +++++.|+.|.+||..
T Consensus       501 c~~i~sy~k~~i~a~~fs~dGs--lla~s~~~~Itiwd~~  538 (792)
T KOG1963|consen  501 CKAIGSYHKTPITALCFSQDGS--LLAVSFDDTITIWDYD  538 (792)
T ss_pred             EeeeeccccCcccchhhcCCCc--EEEEecCCEEEEecCC
Confidence            3333333778899999999996  5677889999999965

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=3.2e-15  Score=118.65  Aligned_cols=243  Identities=16%  Similarity=0.193  Sum_probs=151.8

Q ss_pred             CCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccC
Q 019059           24 ADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYG  103 (346)
Q Consensus        24 ~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~  103 (346)
                      +++....|++++    .+..|++++-+..   .........+..|++++|-|.+..-++.    +--+-|.+|..+...+
T Consensus       106 WhqH~~~fava~----nddvVriy~ksst---~pt~Lks~sQrnvtclawRPlsaselav----gCr~gIciW~~s~tln  174 (445)
T KOG2139|consen  106 WHQHIIAFAVAT----NDDVVRIYDKSST---CPTKLKSVSQRNVTCLAWRPLSASELAV----GCRAGICIWSDSRTLN  174 (445)
T ss_pred             echhhhhhhhhc----cCcEEEEeccCCC---CCceecchhhcceeEEEeccCCcceeee----eecceeEEEEcCcccc
Confidence            333455566553    3456666655442   2222233455789999999987665554    2455799999874422


Q ss_pred             CCCC---cc--ceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCC
Q 019059          104 QLNS---PQ--LERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDP  178 (346)
Q Consensus       104 ~~~~---~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  178 (346)
                      ....   ..  ...+....+| .+|+++.|++||..++-++-.|..|.|||.+++...... ...    ...+.-+.|+|
T Consensus       175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~-~~g----lgg~slLkwSP  248 (445)
T KOG2139|consen  175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI-PKG----LGGFSLLKWSP  248 (445)
T ss_pred             cccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc-ccC----CCceeeEEEcC
Confidence            2111   00  1111223344 689999999999964444456899999999987643332 221    22688899999


Q ss_pred             CCCcEEEEecCCeEEEEEccCC-Cccceee-ccceeEEEeCCCCCcEEEEecCCCeEEEEEcccCC------------cc
Q 019059          179 HDVNAVAATCESSVQFWDLRSM-GKTNSIE-HAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLK------------AP  244 (346)
Q Consensus       179 ~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------------~~  244 (346)
                      |+..++++.-|+..++|..... ...+-.. .+.|....|+|.|.++|++.+....++-.......            .+
T Consensus       249 dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~ll  328 (445)
T KOG2139|consen  249 DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLL  328 (445)
T ss_pred             CCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeee
Confidence            9999999999999999965533 3332222 22399999999999888887765554433222100            00


Q ss_pred             eeee------cC---CCcceEEEEeCCCCCcEEEEecCC--------CeEEEEecCC
Q 019059          245 IQEL------PG---HTHWTWAVCCNPEYDGFILSAGTD--------STVNLWLVST  284 (346)
Q Consensus       245 ~~~~------~~---~~~~v~~v~~~~~~~~~l~s~~~d--------~~i~iwd~~~  284 (346)
                      +..+      .+   -.+++.+++|.|.| .+||+.-..        ..|.+||.+.
T Consensus       329 iaDL~e~ti~ag~~l~cgeaq~lawDpsG-eyLav~fKg~~~v~~~k~~i~~fdtr~  384 (445)
T KOG2139|consen  329 IADLQEVTICAGQRLCCGEAQCLAWDPSG-EYLAVIFKGQSFVLLCKLHISRFDTRK  384 (445)
T ss_pred             eccchhhhhhcCcccccCccceeeECCCC-CEEEEEEcCCchhhhhhhhhhhhcccc
Confidence            0011      11   13578899999999 888875443        3467788776

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.73  E-value=2.9e-17  Score=128.57  Aligned_cols=221  Identities=15%  Similarity=0.191  Sum_probs=152.4

Q ss_pred             EeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEE
Q 019059           70 DLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWS  149 (346)
Q Consensus        70 ~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd  149 (346)
                      -++|||+|++++++     .+..+.|-|..         +.+..+-+. .-+.|..+.|..|..+++.+...++.|.+|+
T Consensus        13 ~c~fSp~g~yiAs~-----~~yrlviRd~~---------tlq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvws   77 (447)
T KOG4497|consen   13 FCSFSPCGNYIASL-----SRYRLVIRDSE---------TLQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWS   77 (447)
T ss_pred             ceeECCCCCeeeee-----eeeEEEEeccc---------hhhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEE
Confidence            46899999999886     56677787776         555544442 2467888999999987666668899999999


Q ss_pred             cCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec-CCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEe
Q 019059          150 LDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-ESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTA  227 (346)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~  227 (346)
                      +...+-..++...     ...+..+.|+|+|++++..+. +-.|.+|.+.+.+....-...+ +..++|+|+|+ +.+..
T Consensus        78 l~Qpew~ckIdeg-----~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~-f~ai~  151 (447)
T KOG4497|consen   78 LVQPEWYCKIDEG-----QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQ-FCAIL  151 (447)
T ss_pred             eecceeEEEeccC-----CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCc-eeeee
Confidence            9865544443322     337899999999988877764 8899999999887665444344 99999999998 44444


Q ss_pred             c-CCCe--EEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccc
Q 019059          228 A-DESG--IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRAN  304 (346)
Q Consensus       228 ~-~dg~--i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  304 (346)
                      + .|..  +.+..-.. -..+..+...+-..+.+.|+||| ..||         +||.-.                   .
T Consensus       152 sRrDCkdyv~i~~c~~-W~ll~~f~~dT~DltgieWsPdg-~~la---------Vwd~~L-------------------e  201 (447)
T KOG4497|consen  152 SRRDCKDYVQISSCKA-WILLKEFKLDTIDLTGIEWSPDG-NWLA---------VWDNVL-------------------E  201 (447)
T ss_pred             ecccHHHHHHHHhhHH-HHHHHhcCCCcccccCceECCCC-cEEE---------Eecchh-------------------h
Confidence            3 3321  22221111 12344555556677899999999 6555         565443                   1


Q ss_pred             ccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEee
Q 019059          305 SLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHM  343 (346)
Q Consensus       305 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~  343 (346)
                      -.+..+. ..-.+..++|+|.++ +|+.|+.|+.+|+-+
T Consensus       202 ykv~aYe-~~lG~k~v~wsP~~q-flavGsyD~~lrvln  238 (447)
T KOG4497|consen  202 YKVYAYE-RGLGLKFVEWSPCNQ-FLAVGSYDQMLRVLN  238 (447)
T ss_pred             heeeeee-eccceeEEEeccccc-eEEeeccchhhhhhc
Confidence            1111111 123488899999987 999999999998854

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.73  E-value=2.4e-14  Score=121.28  Aligned_cols=268  Identities=9%  Similarity=0.076  Sum_probs=164.0

Q ss_pred             CCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeecc
Q 019059           40 EENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH  119 (346)
Q Consensus        40 ~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~  119 (346)
                      .++.+.+++....+   ....+......-..+.|+||+++++++    +.|+.|.++|+.         +.+.+.+++..
T Consensus        14 ~~~~v~viD~~t~~---~~~~i~~~~~~h~~~~~s~Dgr~~yv~----~rdg~vsviD~~---------~~~~v~~i~~G   77 (369)
T PF02239_consen   14 GSGSVAVIDGATNK---VVARIPTGGAPHAGLKFSPDGRYLYVA----NRDGTVSVIDLA---------TGKVVATIKVG   77 (369)
T ss_dssp             GGTEEEEEETTT-S---EEEEEE-STTEEEEEE-TT-SSEEEEE----ETTSEEEEEETT---------SSSEEEEEE-S
T ss_pred             CCCEEEEEECCCCe---EEEEEcCCCCceeEEEecCCCCEEEEE----cCCCeEEEEECC---------cccEEEEEecC
Confidence            46788888765532   223333332333457899999998886    478999999998         67888888664


Q ss_pred             CCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccC--CCceeeEEEEeCCCCCcEEEEec-CCeEEEEE
Q 019059          120 VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSS--GMLHYLSGGAWDPHDVNAVAATC-ESSVQFWD  196 (346)
Q Consensus       120 ~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d  196 (346)
                      . ...++++++||++++++....+.+.++|.++.+....+......  .....+.++..+|....+++.-. .+.|.+.|
T Consensus        78 ~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVd  156 (369)
T PF02239_consen   78 G-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVD  156 (369)
T ss_dssp             S-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEE
T ss_pred             C-CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEE
Confidence            4 46889999999975555577999999999887655554433211  13346778888888876666655 48888889


Q ss_pred             ccCCCccc--eeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCc------------------------------
Q 019059          197 LRSMGKTN--SIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA------------------------------  243 (346)
Q Consensus       197 ~~~~~~~~--~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------------------------------  243 (346)
                      ....+...  .+..+. .....|+|++++++++...+..|-++|.++.+.                              
T Consensus       157 y~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~  236 (369)
T PF02239_consen  157 YSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATS  236 (369)
T ss_dssp             TTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEE
T ss_pred             eccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeec
Confidence            87765442  333344 889999999996666666666777777665321                              


Q ss_pred             ------------------------ceeeecCCCcceEEEEeCCCCCcEEEEe----cCCCeEEEEecCCCCCCCCCcccc
Q 019059          244 ------------------------PIQELPGHTHWTWAVCCNPEYDGFILSA----GTDSTVNLWLVSTSNHDELPSESL  295 (346)
Q Consensus       244 ------------------------~~~~~~~~~~~v~~v~~~~~~~~~l~s~----~~d~~i~iwd~~~~~~~~~~~~~~  295 (346)
                                              .++++.....+ ..+..+|++ +++.+.    ...++|.++|.++           
T Consensus       237 ~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s-~~vwvd~~~~~~~~~v~viD~~t-----------  303 (369)
T PF02239_consen  237 GLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDS-RYVWVDTFLNPDADTVQVIDKKT-----------  303 (369)
T ss_dssp             BSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT--SEEEEE-TT-SSHT-EEEEECCG-----------
T ss_pred             cccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCC-ccEEeeccCCCCCceEEEEECcC-----------
Confidence                                    01111111122 456778999 777776    4457999999998           


Q ss_pred             cCCcccccccccccccccc-ceeeEEEeCCCCCcEEEEeecCC-eEEEeeec
Q 019059          296 VESPNQRANSLLNSYSDYE-DSVYGLAWSSREPWIFASLSYDG-RVRNHMLE  345 (346)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~d~-~v~vw~~~  345 (346)
                              .+.+..+.... ..+..+.|+++|+.+.+|.-.++ .|.+||-.
T Consensus       304 --------l~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~  347 (369)
T PF02239_consen  304 --------LKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAK  347 (369)
T ss_dssp             --------TEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETT
T ss_pred             --------cceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECC
Confidence                    55555554322 24889999999997777776666 89999854

...

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=3.9e-15  Score=130.51  Aligned_cols=228  Identities=11%  Similarity=0.055  Sum_probs=142.6

Q ss_pred             CceEEEEeecCC---cceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEe--cCCeEEEEEcCC
Q 019059           78 QRIFSTVFSTGE---SYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI--DEENIFLWSLDC  152 (346)
Q Consensus        78 ~~l~~~~~~~~~---d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~d~~i~vwd~~~  152 (346)
                      .+++.+...++.   ...|.++|.+          +...+.+..|...+.+.+|+|||+.+++++.  .+..|.+||+.+
T Consensus       166 ~~iafv~~~~~~~~~~~~l~~~d~d----------g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~  235 (435)
T PRK05137        166 TRIVYVAESGPKNKRIKRLAIMDQD----------GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLET  235 (435)
T ss_pred             CeEEEEEeeCCCCCcceEEEEECCC----------CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCC
Confidence            345544332332   3467777765          3444566678889999999999997666653  357899999987


Q ss_pred             CCCCceeeecccCCCceeeEEEEeCCCCCcEEEEe-cCC--eEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEec
Q 019059          153 SNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT-CES--SVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAA  228 (346)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~--~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~  228 (346)
                      +.. ..+.  .   +...+...+|+|||+.++... .++  .|++||+.+++......... .....|+|+++.++++..
T Consensus       236 g~~-~~l~--~---~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~  309 (435)
T PRK05137        236 GQR-ELVG--N---FPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESD  309 (435)
T ss_pred             CcE-EEee--c---CCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEEC
Confidence            643 1221  1   222566789999999876554 444  58888998776533222222 678999999984444443


Q ss_pred             CCC--eEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCC---CeEEEEecCCCCCCCCCcccccCCccccc
Q 019059          229 DES--GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTD---STVNLWLVSTSNHDELPSESLVESPNQRA  303 (346)
Q Consensus       229 ~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  303 (346)
                      .+|  .|+++|+.. . ..+.+..+...+....|+|+| ..|+..+.+   ..|.+||+..                   
T Consensus       310 ~~g~~~Iy~~d~~g-~-~~~~lt~~~~~~~~~~~SpdG-~~ia~~~~~~~~~~i~~~d~~~-------------------  367 (435)
T PRK05137        310 RSGSPQLYVMNADG-S-NPRRISFGGGRYSTPVWSPRG-DLIAFTKQGGGQFSIGVMKPDG-------------------  367 (435)
T ss_pred             CCCCCeEEEEECCC-C-CeEEeecCCCcccCeEECCCC-CEEEEEEcCCCceEEEEEECCC-------------------
Confidence            444  577778764 3 344454445566778899999 777665443   3678888754                   


Q ss_pred             cccccccccccceeeEEEeCCCCCcEEEEeecC-----CeEEEeeec
Q 019059          304 NSLLNSYSDYEDSVYGLAWSSREPWIFASLSYD-----GRVRNHMLE  345 (346)
Q Consensus       304 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----~~v~vw~~~  345 (346)
                      +. ...+.. ...+..+.|+|+|+.++.+....     ..+.+++++
T Consensus       368 ~~-~~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~  412 (435)
T PRK05137        368 SG-ERILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT  412 (435)
T ss_pred             Cc-eEeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence            21 122221 12367789999998444444333     256666664

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=5.5e-15  Score=129.53  Aligned_cols=218  Identities=8%  Similarity=0.021  Sum_probs=139.6

Q ss_pred             CeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCC
Q 019059           42 NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVG  121 (346)
Q Consensus        42 ~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~  121 (346)
                      .++++++....+    .+.+..|...+...+|+|+++.|+.+.+. +.+..|.+||+.         .++. ..+..+.+
T Consensus       182 ~~l~~~d~dg~~----~~~lt~~~~~v~~p~wSpDG~~lay~s~~-~g~~~i~~~dl~---------~g~~-~~l~~~~g  246 (435)
T PRK05137        182 KRLAIMDQDGAN----VRYLTDGSSLVLTPRFSPNRQEITYMSYA-NGRPRVYLLDLE---------TGQR-ELVGNFPG  246 (435)
T ss_pred             eEEEEECCCCCC----cEEEecCCCCeEeeEECCCCCEEEEEEec-CCCCEEEEEECC---------CCcE-EEeecCCC
Confidence            356666654332    13445678899999999999998887532 234789999987         3332 33445566


Q ss_pred             ceEEEEeecCCCCcEEEEecCC--eEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec-C--CeEEEEE
Q 019059          122 KINCVLWWSSGRHDKLVSIDEE--NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-E--SSVQFWD  196 (346)
Q Consensus       122 ~i~~~~~~~~~~~~~~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--~~i~i~d  196 (346)
                      .+...+|+|||+.++++.+.++  .|++||+.++.. ..+.     .+........|+||++.++..+. +  ..|+++|
T Consensus       247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt-----~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d  320 (435)
T PRK05137        247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLT-----DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMN  320 (435)
T ss_pred             cccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEcc-----CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEE
Confidence            7788999999997666665555  477778876542 2221     12224566899999999887764 3  3688889


Q ss_pred             ccCCCccceeeccc-eeEEEeCCCCCcEEEEecCC--CeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecC
Q 019059          197 LRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADE--SGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGT  273 (346)
Q Consensus       197 ~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~  273 (346)
                      +..++......... +....|+|+|+.++++....  ..|.+||+.. + ....+. ....+..+.|+|+| +.|+..+.
T Consensus       321 ~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~-~-~~~~lt-~~~~~~~p~~spDG-~~i~~~~~  396 (435)
T PRK05137        321 ADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDG-S-GERILT-SGFLVEGPTWAPNG-RVIMFFRQ  396 (435)
T ss_pred             CCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCC-C-ceEecc-CCCCCCCCeECCCC-CEEEEEEc
Confidence            87665433222122 77789999999444443333  3677888753 2 233333 23356788999999 66655433


Q ss_pred             -C-----CeEEEEecCC
Q 019059          274 -D-----STVNLWLVST  284 (346)
Q Consensus       274 -d-----~~i~iwd~~~  284 (346)
                       .     ..+.++|+..
T Consensus       397 ~~~~~~~~~L~~~dl~g  413 (435)
T PRK05137        397 TPGSGGAPKLYTVDLTG  413 (435)
T ss_pred             cCCCCCcceEEEEECCC
Confidence             2     2577777765

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=4.5e-15  Score=129.39  Aligned_cols=215  Identities=10%  Similarity=0.043  Sum_probs=136.1

Q ss_pred             ceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEe--cCCeEEEEEcCCCCCCceeeecccCCCc
Q 019059           91 YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI--DEENIFLWSLDCSNKNAQVQSKQSSGML  168 (346)
Q Consensus        91 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~  168 (346)
                      ..|.+||.+          +...+.+..+...+...+|+|||+.+++++.  .+..|.+|++.+++. ..+.  ...+  
T Consensus       179 ~~l~~~d~d----------g~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~-~~l~--~~~~--  243 (429)
T PRK03629        179 YELRVSDYD----------GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVA--SFPR--  243 (429)
T ss_pred             eeEEEEcCC----------CCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe-EEcc--CCCC--
Confidence            468888876          2223444556778999999999997665552  246799999986542 1111  1122  


Q ss_pred             eeeEEEEeCCCCCcEEEEe-cCC--eEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEE--EcccCC
Q 019059          169 HYLSGGAWDPHDVNAVAAT-CES--SVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLW--DLRMLK  242 (346)
Q Consensus       169 ~~v~~~~~~~~~~~l~~~~-~d~--~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~--d~~~~~  242 (346)
                       .....+|+|||+.|+... .++  .|++||+.+++......... +....|+|+++.++++...++...+|  |+.. +
T Consensus       244 -~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~-g  321 (429)
T PRK03629        244 -HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNING-G  321 (429)
T ss_pred             -CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCC-C
Confidence             345679999999888764 344  59999998876543332222 78899999998444454445555555  5543 2


Q ss_pred             cceeeecCCCcceEEEEeCCCCCcEEEEecC-C--CeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeE
Q 019059          243 APIQELPGHTHWTWAVCCNPEYDGFILSAGT-D--STVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYG  319 (346)
Q Consensus       243 ~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~-d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  319 (346)
                       ....+..+........|+|+| .+|+..+. +  ..|.+||+.+                   ++. ..+... .....
T Consensus       322 -~~~~lt~~~~~~~~~~~SpDG-~~Ia~~~~~~g~~~I~~~dl~~-------------------g~~-~~Lt~~-~~~~~  378 (429)
T PRK03629        322 -APQRITWEGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLAT-------------------GGV-QVLTDT-FLDET  378 (429)
T ss_pred             -CeEEeecCCCCccCEEECCCC-CEEEEEEccCCCceEEEEECCC-------------------CCe-EEeCCC-CCCCC
Confidence             344444444556678999999 77766543 3  3588889876                   322 222211 12346


Q ss_pred             EEeCCCCCcEEEEeecCCe---EEEeeecC
Q 019059          320 LAWSSREPWIFASLSYDGR---VRNHMLEK  346 (346)
Q Consensus       320 ~~~~~~~~~~l~s~~~d~~---v~vw~~~~  346 (346)
                      ..|+|||+ +|+..+.++.   +.++++++
T Consensus       379 p~~SpDG~-~i~~~s~~~~~~~l~~~~~~G  407 (429)
T PRK03629        379 PSIAPNGT-MVIYSSSQGMGSVLNLVSTDG  407 (429)
T ss_pred             ceECCCCC-EEEEEEcCCCceEEEEEECCC
Confidence            78999998 6666666654   66666653

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.72  E-value=1e-13  Score=110.48  Aligned_cols=231  Identities=13%  Similarity=0.178  Sum_probs=158.1

Q ss_pred             CCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccC
Q 019059           24 ADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYG  103 (346)
Q Consensus        24 ~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~  103 (346)
                      ++.+...+.+|+.     ....+++..+..+   ......-...|--+-|+.  ..++.+.  -.+.+.+++.++.    
T Consensus        13 ~Nqd~~~lsvGs~-----~Gyk~~~~~~~~k---~~~~~~~~~~IvEmLFSS--SLvaiV~--~~qpr~Lkv~~~K----   76 (391)
T KOG2110|consen   13 FNQDSTLLSVGSK-----DGYKIFSCSPFEK---CFSKDTEGVSIVEMLFSS--SLVAIVS--IKQPRKLKVVHFK----   76 (391)
T ss_pred             eccceeEEEccCC-----CceeEEecCchHH---hhcccCCCeEEEEeeccc--ceeEEEe--cCCCceEEEEEcc----
Confidence            4555555666542     2334454444322   111111123455555653  3444432  1334679999987    


Q ss_pred             CCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcE
Q 019059          104 QLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNA  183 (346)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  183 (346)
                           ....+..+ ....+|.++.++.+.   +++.- ...|+|||+.+-+....+....  .+...+.++.+++.+.++
T Consensus        77 -----k~~~ICe~-~fpt~IL~VrmNr~R---LvV~L-ee~IyIydI~~MklLhTI~t~~--~n~~gl~AlS~n~~n~yl  144 (391)
T KOG2110|consen   77 -----KKTTICEI-FFPTSILAVRMNRKR---LVVCL-EESIYIYDIKDMKLLHTIETTP--PNPKGLCALSPNNANCYL  144 (391)
T ss_pred             -----cCceEEEE-ecCCceEEEEEccce---EEEEE-cccEEEEecccceeehhhhccC--CCccceEeeccCCCCceE
Confidence                 55566555 346789999997642   45553 4569999999766544443321  233356777777766677


Q ss_pred             EEEe--cCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCe-EEEEEcccCCcceeeecCCC--cce
Q 019059          184 VAAT--CESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESG-IHLWDLRMLKAPIQELPGHT--HWT  255 (346)
Q Consensus       184 ~~~~--~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~--~~v  255 (346)
                      +.-+  ..|.|.+||+.+-+++..+. .|   +.+++|+++|. ++|++++.|+ ||+|.+.+ ++.+.+|+...  ..|
T Consensus       145 Ayp~s~t~GdV~l~d~~nl~~v~~I~-aH~~~lAalafs~~G~-llATASeKGTVIRVf~v~~-G~kl~eFRRG~~~~~I  221 (391)
T KOG2110|consen  145 AYPGSTTSGDVVLFDTINLQPVNTIN-AHKGPLAALAFSPDGT-LLATASEKGTVIRVFSVPE-GQKLYEFRRGTYPVSI  221 (391)
T ss_pred             EecCCCCCceEEEEEcccceeeeEEE-ecCCceeEEEECCCCC-EEEEeccCceEEEEEEcCC-ccEeeeeeCCceeeEE
Confidence            7654  36899999999999988887 67   99999999998 9999999996 79999987 66777776433  457


Q ss_pred             EEEEeCCCCCcEEEEecCCCeEEEEecCCCC
Q 019059          256 WAVCCNPEYDGFILSAGTDSTVNLWLVSTSN  286 (346)
Q Consensus       256 ~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~  286 (346)
                      .+++|+|++ .+|++.|..++|+||.+....
T Consensus       222 ySL~Fs~ds-~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  222 YSLSFSPDS-QFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             EEEEECCCC-CeEEEecCCCeEEEEEecccc
Confidence            899999999 899999999999999998753

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.72  E-value=6.9e-15  Score=133.38  Aligned_cols=280  Identities=17%  Similarity=0.179  Sum_probs=173.6

Q ss_pred             EEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCc
Q 019059           56 LICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHD  135 (346)
Q Consensus        56 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  135 (346)
                      .....+..|...|..++.++...-++++   |+.||+|++|++.+...+.  ...+...++......+.++...+.+.. 
T Consensus      1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~Fvs---gS~DGtVKvW~~~k~~~~~--~s~rS~ltys~~~sr~~~vt~~~~~~~- 1112 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVS---GSDDGTVKVWNLRKLEGEG--GSARSELTYSPEGSRVEKVTMCGNGDQ- 1112 (1431)
T ss_pred             eEeehhhhccccccceeecCCCCceEEE---ecCCceEEEeeehhhhcCc--ceeeeeEEEeccCCceEEEEeccCCCe-
Confidence            4457788899999999998877444444   5899999999998543321  223334445445678999999999886 


Q ss_pred             EEEEecCCeEEEEEcCCCCCCceeee----cccCCCceeeEEEEeCCCC-C-cEEEEecCCeEEEEEccCCCccceee--
Q 019059          136 KLVSIDEENIFLWSLDCSNKNAQVQS----KQSSGMLHYLSGGAWDPHD-V-NAVAATCESSVQFWDLRSMGKTNSIE--  207 (346)
Q Consensus       136 ~~~~~~d~~i~vwd~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~-~-~l~~~~~d~~i~i~d~~~~~~~~~~~--  207 (346)
                      +++++.||.|++.+++..+.......    ........-+...+|.... . .++.+..-+.|..||++.......++  
T Consensus      1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred             EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence            66668899999999985321111111    1111111123333443322 2 46666678899999999876544433  


Q ss_pred             ccc--eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeec-CCCcceEEEEeCCCCC--cEEEEec--CCCeEEEE
Q 019059          208 HAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP-GHTHWTWAVCCNPEYD--GFILSAG--TDSTVNLW  280 (346)
Q Consensus       208 ~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~v~~~~~~~--~~l~s~~--~d~~i~iw  280 (346)
                      ..|  |++++.+|.+. +++.|...|.+-+||+|- +.++.... ++..+++.+..+|..+  ...++++  ..+.|.+|
T Consensus      1193 ~~hG~vTSi~idp~~~-WlviGts~G~l~lWDLRF-~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~w 1270 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCN-WLVIGTSRGQLVLWDLRF-RVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTW 1270 (1431)
T ss_pred             ccccceeEEEecCCce-EEEEecCCceEEEEEeec-CceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeee
Confidence            233  99999999998 999999999999999995 66666654 4557888888777653  4444444  47789999


Q ss_pred             ecCCCCCCCCCcccccCCcccccccccc-ccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          281 LVSTSNHDELPSESLVESPNQRANSLLN-SYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       281 d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      ++.++.... ..+..+..+......+.. .-+.+.-......+..-+ .++.+++.|..||.||..
T Consensus      1271 n~~~g~~~~-vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~-~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1271 NMETGLRQT-VLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKN-GFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred             ecccCcceE-EEEcCCCCcchhhhcccccCCCCCcccceeeecccCC-ceeeecCCccceeeccCC
Confidence            999852221 111111111000000000 000111111222232223 388999999999999964

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=4.9e-15  Score=129.69  Aligned_cols=237  Identities=10%  Similarity=0.119  Sum_probs=149.6

Q ss_pred             eEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCc
Q 019059           43 EVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGK  122 (346)
Q Consensus        43 ~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (346)
                      .+.+++....+.    ..+..+...+.+.+|+|+++.|+.+.+. +....|.+|++.         .++. ..+....+.
T Consensus       185 ~l~i~D~~g~~~----~~lt~~~~~v~~p~wSpDg~~la~~s~~-~~~~~l~~~dl~---------~g~~-~~l~~~~g~  249 (433)
T PRK04922        185 ALQVADSDGYNP----QTILRSAEPILSPAWSPDGKKLAYVSFE-RGRSAIYVQDLA---------TGQR-ELVASFRGI  249 (433)
T ss_pred             EEEEECCCCCCc----eEeecCCCccccccCCCCCCEEEEEecC-CCCcEEEEEECC---------CCCE-EEeccCCCC
Confidence            466666543322    3344677789999999999998887432 234579999987         2222 223333445


Q ss_pred             eEEEEeecCCCCcEEEEecCC--eEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec-CC--eEEEEEc
Q 019059          123 INCVLWWSSGRHDKLVSIDEE--NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-ES--SVQFWDL  197 (346)
Q Consensus       123 i~~~~~~~~~~~~~~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~i~d~  197 (346)
                      ..+..|+|+|+.++++.+.++  .|++||+.+++. ..+.     .+.......+|+|+++.++.++. ++  .|+++|+
T Consensus       250 ~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt-----~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl  323 (433)
T PRK04922        250 NGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLT-----NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAA  323 (433)
T ss_pred             ccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECc-----cCCCCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence            567899999997666655444  699999986542 2211     11223456799999999888774 34  4777787


Q ss_pred             cCCCccceeeccc-eeEEEeCCCCCcEEEEecCCC--eEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCC
Q 019059          198 RSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADES--GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTD  274 (346)
Q Consensus       198 ~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d  274 (346)
                      .+++.......+. ...++|+|+|+.++++...++  .|.+||+.. +. ...+. +........|+|+| ++|+..+.+
T Consensus       324 ~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~-g~-~~~Lt-~~~~~~~p~~spdG-~~i~~~s~~  399 (433)
T PRK04922        324 SGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLST-GS-VRTLT-PGSLDESPSFAPNG-SMVLYATRE  399 (433)
T ss_pred             CCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCC-CC-eEECC-CCCCCCCceECCCC-CEEEEEEec
Confidence            7665433222233 667899999994444433333  689999875 32 33443 23345567899999 766655542


Q ss_pred             ---CeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCC
Q 019059          275 ---STVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS  324 (346)
Q Consensus       275 ---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  324 (346)
                         ..|.++++..                    .....+..+.+.+...+|+|
T Consensus       400 ~g~~~L~~~~~~g--------------------~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        400 GGRGVLAAVSTDG--------------------RVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             CCceEEEEEECCC--------------------CceEEcccCCCCCCCCccCC
Confidence               3577777753                    34444544555677788887

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.71  E-value=1.9e-15  Score=116.48  Aligned_cols=152  Identities=18%  Similarity=0.274  Sum_probs=108.8

Q ss_pred             EEEEeecCCCCcEEEEec---------CCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEe--cCCeE
Q 019059          124 NCVLWWSSGRHDKLVSID---------EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT--CESSV  192 (346)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~---------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i  192 (346)
                      ..+.|+++|+++++....         -+...+|.++.............   ..+|.+++|+|+++.+++..  .+..|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~---~~~I~~~~WsP~g~~favi~g~~~~~v   85 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKK---EGPIHDVAWSPNGNEFAVIYGSMPAKV   85 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccC---CCceEEEEECcCCCEEEEEEccCCccc
Confidence            467899999986665541         24566777754443333333222   22699999999999876654  46799


Q ss_pred             EEEEccCCCccceeeccceeEEEeCCCCCcEEEEec---CCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEE
Q 019059          193 QFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAA---DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFIL  269 (346)
Q Consensus       193 ~i~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~  269 (346)
                      .+||++ ++.+..+....++.+.|+|+|+ ++++++   ..|.|.+||.++ ...+.... | ..++.++|+|+| ++|+
T Consensus        86 ~lyd~~-~~~i~~~~~~~~n~i~wsP~G~-~l~~~g~~n~~G~l~~wd~~~-~~~i~~~~-~-~~~t~~~WsPdG-r~~~  159 (194)
T PF08662_consen   86 TLYDVK-GKKIFSFGTQPRNTISWSPDGR-FLVLAGFGNLNGDLEFWDVRK-KKKISTFE-H-SDATDVEWSPDG-RYLA  159 (194)
T ss_pred             EEEcCc-ccEeEeecCCCceEEEECCCCC-EEEEEEccCCCcEEEEEECCC-CEEeeccc-c-CcEEEEEEcCCC-CEEE
Confidence            999997 6666666543489999999999 566554   347899999996 44555554 3 357899999999 8888


Q ss_pred             EecC------CCeEEEEecCC
Q 019059          270 SAGT------DSTVNLWLVST  284 (346)
Q Consensus       270 s~~~------d~~i~iwd~~~  284 (346)
                      +++.      |+.++||+...
T Consensus       160 ta~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  160 TATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             EEEeccceeccccEEEEEecC
Confidence            8764      78899999873

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.71  E-value=1.2e-13  Score=108.05  Aligned_cols=234  Identities=16%  Similarity=0.189  Sum_probs=153.0

Q ss_pred             ccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCC-----cceEEEE
Q 019059           22 VKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGE-----SYGAAIW   96 (346)
Q Consensus        22 ~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~-----d~~i~vw   96 (346)
                      +.++.+...|++++     +.-.++++.++-+.... +....-.-.+..+-|  ..++++.+.  |+.     ...|.||
T Consensus        11 vs~NQD~ScFava~-----~~Gfriyn~~P~ke~~~-r~~~~~G~~~veMLf--R~N~laLVG--Gg~~pky~pNkviIW   80 (346)
T KOG2111|consen   11 VSFNQDHSCFAVAT-----DTGFRIYNCDPFKESAS-RQFIDGGFKIVEMLF--RSNYLALVG--GGSRPKYPPNKVIIW   80 (346)
T ss_pred             EEEccCCceEEEEe-----cCceEEEecCchhhhhh-hccccCchhhhhHhh--hhceEEEec--CCCCCCCCCceEEEE
Confidence            66788888898875     44567787777432111 111111112222223  234555542  333     3569999


Q ss_pred             ecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCC-CCCceeeecccCCCceeeEEEE
Q 019059           97 QIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCS-NKNAQVQSKQSSGMLHYLSGGA  175 (346)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~v~~~~  175 (346)
                      |=.         ...++.++ ....+|.++.+.++.   +++. ..+.|+||...+. +....+.....   ...+.++.
T Consensus        81 DD~---------k~~~i~el-~f~~~I~~V~l~r~r---iVvv-l~~~I~VytF~~n~k~l~~~et~~N---PkGlC~~~  143 (346)
T KOG2111|consen   81 DDL---------KERCIIEL-SFNSEIKAVKLRRDR---IVVV-LENKIYVYTFPDNPKLLHVIETRSN---PKGLCSLC  143 (346)
T ss_pred             ecc---------cCcEEEEE-EeccceeeEEEcCCe---EEEE-ecCeEEEEEcCCChhheeeeecccC---CCceEeec
Confidence            933         45666666 457899999998762   3333 4789999998743 22222222221   11333333


Q ss_pred             eCCCCCcEEEEe-cCCeEEEEEccCCCc-cceeeccc---eeEEEeCCCCCcEEEEecCCCe-EEEEEcccCCcceeeec
Q 019059          176 WDPHDVNAVAAT-CESSVQFWDLRSMGK-TNSIEHAH---VRNVDYDTKKKHLLVTAADESG-IHLWDLRMLKAPIQELP  249 (346)
Q Consensus       176 ~~~~~~~l~~~~-~d~~i~i~d~~~~~~-~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~  249 (346)
                      -+.+...|+.-+ .-|.|.|-|+...+. ...+..+|   |.|++.+.+|. ++|+++..|+ |||||.++ +.++.+++
T Consensus       144 ~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~~-g~~l~E~R  221 (346)
T KOG2111|consen  144 PTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGT-LVATASTKGTLIRIFDTED-GTLLQELR  221 (346)
T ss_pred             CCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCcc-EEEEeccCcEEEEEEEcCC-CcEeeeee
Confidence            332333343333 468999999987665 23333467   99999999998 9999999997 79999998 55777776


Q ss_pred             C--CCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCC
Q 019059          250 G--HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTS  285 (346)
Q Consensus       250 ~--~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~  285 (346)
                      .  ....|.+++|||+. .+||++|+.|+|+|+.++..
T Consensus       222 RG~d~A~iy~iaFSp~~-s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  222 RGVDRADIYCIAFSPNS-SWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             cCCchheEEEEEeCCCc-cEEEEEcCCCeEEEEEeecC
Confidence            3  33679999999999 99999999999999999864

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=6.5e-15  Score=128.93  Aligned_cols=214  Identities=12%  Similarity=0.108  Sum_probs=134.0

Q ss_pred             ceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEe--cCCeEEEEEcCCCCCCceeeecccCCCc
Q 019059           91 YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI--DEENIFLWSLDCSNKNAQVQSKQSSGML  168 (346)
Q Consensus        91 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~  168 (346)
                      ..|.+||.+          +...+.+..+...+.+..|+|||+.+++++.  .+..|++||+.++... .+.  ...+  
T Consensus       184 ~~l~i~D~~----------g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~--~~~g--  248 (433)
T PRK04922        184 YALQVADSD----------GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVA--SFRG--  248 (433)
T ss_pred             EEEEEECCC----------CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-Eec--cCCC--
Confidence            468888875          2333455567778999999999997555552  2457999999865431 111  1112  


Q ss_pred             eeeEEEEeCCCCCcEEEE-ecCC--eEEEEEccCCCccceeeccc--eeEEEeCCCCCcEEEEecCCCe--EEEEEcccC
Q 019059          169 HYLSGGAWDPHDVNAVAA-TCES--SVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAADESG--IHLWDLRML  241 (346)
Q Consensus       169 ~~v~~~~~~~~~~~l~~~-~~d~--~i~i~d~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~--i~i~d~~~~  241 (346)
                       .....+|+|+++.++.. +.++  .|++||+.+++... +....  ...++|+|+++.++++...+|.  |+++|+.. 
T Consensus       249 -~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~-  325 (433)
T PRK04922        249 -INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR-LTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG-  325 (433)
T ss_pred             -CccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-
Confidence             34577999999987654 4444  69999998876433 33222  5688999999854555445555  55566654 


Q ss_pred             CcceeeecCCCcceEEEEeCCCCCcEEEEecCCC---eEEEEecCCCCCCCCCcccccCCccccccccccccccccceee
Q 019059          242 KAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDS---TVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVY  318 (346)
Q Consensus       242 ~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  318 (346)
                      + ....+..+......++|+|+| .+|+..+.++   .|.+||+.+                   ++.. .+.. .....
T Consensus       326 g-~~~~lt~~g~~~~~~~~SpDG-~~Ia~~~~~~~~~~I~v~d~~~-------------------g~~~-~Lt~-~~~~~  382 (433)
T PRK04922        326 G-SAERLTFQGNYNARASVSPDG-KKIAMVHGSGGQYRIAVMDLST-------------------GSVR-TLTP-GSLDE  382 (433)
T ss_pred             C-CeEEeecCCCCccCEEECCCC-CEEEEEECCCCceeEEEEECCC-------------------CCeE-ECCC-CCCCC
Confidence            2 233333333445578999999 7776654332   699999876                   3332 2322 22345


Q ss_pred             EEEeCCCCCcEEEEeecC--CeEEEeeec
Q 019059          319 GLAWSSREPWIFASLSYD--GRVRNHMLE  345 (346)
Q Consensus       319 ~~~~~~~~~~~l~s~~~d--~~v~vw~~~  345 (346)
                      ...|+|+|+.++++....  ..+.+++++
T Consensus       383 ~p~~spdG~~i~~~s~~~g~~~L~~~~~~  411 (433)
T PRK04922        383 SPSFAPNGSMVLYATREGGRGVLAAVSTD  411 (433)
T ss_pred             CceECCCCCEEEEEEecCCceEEEEEECC
Confidence            679999998444443332  346666664

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=8.8e-15  Score=127.68  Aligned_cols=240  Identities=11%  Similarity=0.111  Sum_probs=143.9

Q ss_pred             CeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCC
Q 019059           42 NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVG  121 (346)
Q Consensus        42 ~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~  121 (346)
                      .++++++....+  .  ..+..+...+.+.+|+|+++.|+.+.+. +....|.+||+.         .++.. .+....+
T Consensus       176 ~~L~~~D~dG~~--~--~~l~~~~~~v~~p~wSPDG~~la~~s~~-~~~~~I~~~dl~---------~g~~~-~l~~~~g  240 (427)
T PRK02889        176 YQLQISDADGQN--A--QSALSSPEPIISPAWSPDGTKLAYVSFE-SKKPVVYVHDLA---------TGRRR-VVANFKG  240 (427)
T ss_pred             cEEEEECCCCCC--c--eEeccCCCCcccceEcCCCCEEEEEEcc-CCCcEEEEEECC---------CCCEE-EeecCCC
Confidence            355555543321  1  2344677889999999999998876422 223569999987         33322 2333345


Q ss_pred             ceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec-CCeEEEEEc--c
Q 019059          122 KINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-ESSVQFWDL--R  198 (346)
Q Consensus       122 ~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~--~  198 (346)
                      .+....|+|||+.++++.+.++...+|.++...........    +........|+|||+.++..+. ++...+|.+  .
T Consensus       241 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~----~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~  316 (427)
T PRK02889        241 SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQ----SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPAS  316 (427)
T ss_pred             CccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCC----CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECC
Confidence            56789999999976666666777666665422111111111    1223456789999999887764 455555554  4


Q ss_pred             CCCccceeeccc-eeEEEeCCCCCcEEEEecCCC---eEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecC-
Q 019059          199 SMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADES---GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGT-  273 (346)
Q Consensus       199 ~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~-  273 (346)
                      +++.......+. ....+|+|+|+ .++..+.++   .|.+||+....  ...+.. ......+.|+|+| +.|+..+. 
T Consensus       317 ~g~~~~lt~~g~~~~~~~~SpDG~-~Ia~~s~~~g~~~I~v~d~~~g~--~~~lt~-~~~~~~p~~spdg-~~l~~~~~~  391 (427)
T PRK02889        317 GGAAQRVTFTGSYNTSPRISPDGK-LLAYISRVGGAFKLYVQDLATGQ--VTALTD-TTRDESPSFAPNG-RYILYATQQ  391 (427)
T ss_pred             CCceEEEecCCCCcCceEECCCCC-EEEEEEccCCcEEEEEEECCCCC--eEEccC-CCCccCceECCCC-CEEEEEEec
Confidence            444322222233 55789999999 555444333   69999987632  333432 2344678999999 66655554 


Q ss_pred             CCe--EEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCC
Q 019059          274 DST--VNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSR  325 (346)
Q Consensus       274 d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  325 (346)
                      .+.  +.+.+..                    +.....+..+.+.+...+|+|-
T Consensus       392 ~g~~~l~~~~~~--------------------g~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        392 GGRSVLAAVSSD--------------------GRIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             CCCEEEEEEECC--------------------CCceEEeecCCCCCCCCccCCC
Confidence            333  4444553                    3444445555566788889874

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=3.1e-15  Score=125.42  Aligned_cols=239  Identities=12%  Similarity=0.125  Sum_probs=166.7

Q ss_pred             eeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeecc-CC-ceEEEEeecCCCCcEE
Q 019059           60 GLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH-VG-KINCVLWWSSGRHDKL  137 (346)
Q Consensus        60 ~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~-~~-~i~~~~~~~~~~~~~~  137 (346)
                      +-+.|+..-+.|..+|||++++++   |-....|++||+.         .  ....+..| .. .|.-.-.+.|-.. ++
T Consensus        46 Qdfe~p~ast~ik~s~DGqY~lAt---G~YKP~ikvydla---------n--LSLKFERhlDae~V~feiLsDD~SK-~v  110 (703)
T KOG2321|consen   46 QDFEMPTASTRIKVSPDGQYLLAT---GTYKPQIKVYDLA---------N--LSLKFERHLDAEVVDFEILSDDYSK-SV  110 (703)
T ss_pred             HhcCCccccceeEecCCCcEEEEe---cccCCceEEEEcc---------c--ceeeeeecccccceeEEEeccchhh-he
Confidence            345788889999999999999998   5677899999998         2  32344455 33 3444444444443 33


Q ss_pred             EEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc--eeEEE
Q 019059          138 VSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--VRNVD  215 (346)
Q Consensus       138 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--v~~~~  215 (346)
                      .-..|..|.+......  ...+..+.      .-..++++.-..-|+.++....|+-+++..|.-+..+....  ++++.
T Consensus       111 ~L~~DR~IefHak~G~--hy~~RIP~------~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~  182 (703)
T KOG2321|consen  111 FLQNDRTIEFHAKYGR--HYRTRIPK------FGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVS  182 (703)
T ss_pred             EeecCceeeehhhcCe--eeeeecCc------CCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeee
Confidence            3345778776554311  11221111      34566666555557777777789999999999877776443  99999


Q ss_pred             eCCCCCcEEEEecCCCeEEEEEcccCCcceeeec------CCCc-----ceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          216 YDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP------GHTH-----WTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       216 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~~~-----~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      .++... +|++|+.+|.|..||.|. +..+..+.      .|.+     .|+++.|+.+| -.+++|..+|.+.|||++.
T Consensus       183 in~~hg-Lla~Gt~~g~VEfwDpR~-ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLRa  259 (703)
T KOG2321|consen  183 INEEHG-LLACGTEDGVVEFWDPRD-KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLRA  259 (703)
T ss_pred             ecCccc-eEEecccCceEEEecchh-hhhheeeecccccCCCccccccCcceEEEecCCc-eeEEeeccCCcEEEEEccc
Confidence            999988 999999999999999997 43444332      2333     39999999999 9999999999999999998


Q ss_pred             CCCCCCCcccccCCcccccccccc-ccccccceeeEEEeCCCCC-cEEEEeecCCeEEEeee
Q 019059          285 SNHDELPSESLVESPNQRANSLLN-SYSDYEDSVYGLAWSSREP-WIFASLSYDGRVRNHML  344 (346)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~l~s~~~d~~v~vw~~  344 (346)
                                         .+++. .-.+..-+|..+.|.+.+. ..+++. ....++||+-
T Consensus       260 -------------------~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~  301 (703)
T KOG2321|consen  260 -------------------SKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDE  301 (703)
T ss_pred             -------------------CCceeecccCCccceeeecccccCCCceEEec-chHHhhhccc
Confidence                               44433 3334456899999987632 244444 3577899974

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=6.2e-15  Score=129.38  Aligned_cols=236  Identities=11%  Similarity=0.125  Sum_probs=169.6

Q ss_pred             EeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCC--cEEEEecCCeEEE
Q 019059           70 DLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRH--DKLVSIDEENIFL  147 (346)
Q Consensus        70 ~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~d~~i~v  147 (346)
                      ...|++|+++++..     .+..|.||...         ++.++..+..|..++..+.+.|....  .+++++.+|.|++
T Consensus        21 ~avfSnD~k~l~~~-----~~~~V~VyS~~---------Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~v   86 (792)
T KOG1963|consen   21 PAVFSNDAKFLFLC-----TGNFVKVYSTA---------TGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRV   86 (792)
T ss_pred             ccccccCCcEEEEe-----eCCEEEEEecc---------hHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEE
Confidence            35689999999886     45599999998         88999999999999999999887663  2445678999999


Q ss_pred             EEcCCCCCCceeeecc----------------------------------c--------------------CCCceeeEE
Q 019059          148 WSLDCSNKNAQVQSKQ----------------------------------S--------------------SGMLHYLSG  173 (346)
Q Consensus       148 wd~~~~~~~~~~~~~~----------------------------------~--------------------~~~~~~v~~  173 (346)
                      ||...+..........                                  .                    ..+. .-..
T Consensus        87 wd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~-~~~~  165 (792)
T KOG1963|consen   87 WDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQ-EPKS  165 (792)
T ss_pred             ecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhc-CCcc
Confidence            9987653222111100                                  0                    0000 0122


Q ss_pred             EEeCCCCCcEEEEecCCeEEEEEccCCCcc---ceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEc-c--cCCcc
Q 019059          174 GAWDPHDVNAVAATCESSVQFWDLRSMGKT---NSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDL-R--MLKAP  244 (346)
Q Consensus       174 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~-~--~~~~~  244 (346)
                      +.+++.+... ....+..+.+|....+...   +.....|   +++.+++|.++ +++++..||.|.+|.- .  .....
T Consensus       166 I~~~~~ge~~-~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~-~~Aa~d~dGrI~vw~d~~~~~~~~t  243 (792)
T KOG1963|consen  166 IVDNNSGEFK-GIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNER-YLAAGDSDGRILVWRDFGSSDDSET  243 (792)
T ss_pred             EEEcCCceEE-EEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccc-eEEEeccCCcEEEEecccccccccc
Confidence            3334333322 2223456778887765411   1112223   79999999998 8999999999999953 2  12234


Q ss_pred             eeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCC
Q 019059          245 IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS  324 (346)
Q Consensus       245 ~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  324 (346)
                      .+.+.-|...|+++.|+++| .+|++|+..+.+.+|.+.+                   ++ .+-++.-.++|..+.++|
T Consensus       244 ~t~lHWH~~~V~~L~fS~~G-~~LlSGG~E~VLv~Wq~~T-------------------~~-kqfLPRLgs~I~~i~vS~  302 (792)
T KOG1963|consen  244 CTLLHWHHDEVNSLSFSSDG-AYLLSGGREGVLVLWQLET-------------------GK-KQFLPRLGSPILHIVVSP  302 (792)
T ss_pred             ceEEEecccccceeEEecCC-ceEeecccceEEEEEeecC-------------------CC-cccccccCCeeEEEEEcC
Confidence            56677799999999999999 9999999999999999998                   44 444555677899999999


Q ss_pred             CCCcEEEEeecCCeEEEeee
Q 019059          325 REPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       325 ~~~~~l~s~~~d~~v~vw~~  344 (346)
                      |+. +.+...+|..|.+-..
T Consensus       303 ds~-~~sl~~~DNqI~li~~  321 (792)
T KOG1963|consen  303 DSD-LYSLVLEDNQIHLIKA  321 (792)
T ss_pred             CCC-eEEEEecCceEEEEec
Confidence            997 7788888999887654

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.69  E-value=1.7e-16  Score=138.29  Aligned_cols=273  Identities=13%  Similarity=0.221  Sum_probs=192.4

Q ss_pred             EeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEe
Q 019059           18 CISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQ   97 (346)
Q Consensus        18 ~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~   97 (346)
                      +|.+.-++..+..++.|+    .+..+.+|.....   .......||.+.|++++.+.++..+++    ++.|..|++|.
T Consensus       192 aVyca~fDrtg~~Iitgs----dd~lvKiwS~et~---~~lAs~rGhs~ditdlavs~~n~~iaa----aS~D~vIrvWr  260 (1113)
T KOG0644|consen  192 AVYCAIFDRTGRYIITGS----DDRLVKIWSMETA---RCLASCRGHSGDITDLAVSSNNTMIAA----ASNDKVIRVWR  260 (1113)
T ss_pred             heeeeeeccccceEeecC----ccceeeeeeccch---hhhccCCCCccccchhccchhhhhhhh----cccCceEEEEe
Confidence            455555676777777663    5667777774432   344677899999999999987766666    47999999999


Q ss_pred             cCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecc-cCCCceeeEEEEe
Q 019059           98 IPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQ-SSGMLHYLSGGAW  176 (346)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~v~~~~~  176 (346)
                      +.         .+.++..+.+|++.|++++|+|-     .+++.||++++||.+-.  ...+.... ......-+.++.|
T Consensus       261 l~---------~~~pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r~~--~~~y~prp~~~~~~~~~~s~~~  324 (1113)
T KOG0644|consen  261 LP---------DGAPVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDARLE--PRIYVPRPLKFTEKDLVDSILF  324 (1113)
T ss_pred             cC---------CCchHHHHhccccceeeeccCcc-----ccCCCCCceEecccccc--ccccCCCCCCcccccceeeeec
Confidence            98         78999999999999999999994     36678999999998711  11111111 0111234566677


Q ss_pred             CCCCCcEEEEecCCeEEEEEccCCCccceeeccceeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceE
Q 019059          177 DPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTW  256 (346)
Q Consensus       177 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~  256 (346)
                      ...+...++++.|+.-..|.+.........    +.-+.++.+-....+++-.+-.+.+|++-. +...+.+.+|...+.
T Consensus       325 ~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~----lif~t~ssd~~~~~~~ar~~~~~~vwnl~~-g~l~H~l~ghsd~~y  399 (1113)
T KOG0644|consen  325 ENNGDRFLTGSRDGEARNHEFEQLAWRSNL----LIFVTRSSDLSSIVVTARNDHRLCVWNLYT-GQLLHNLMGHSDEVY  399 (1113)
T ss_pred             cccccccccccCCcccccchhhHhhhhccc----eEEEeccccccccceeeeeeeEeeeeeccc-chhhhhhccccccee
Confidence            777777888888887777765432211000    111222222222566677778899999987 667888899999999


Q ss_pred             EEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccc-ccccceeeEEEeCCCCCcEEEEeec
Q 019059          257 AVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSY-SDYEDSVYGLAWSSREPWIFASLSY  335 (346)
Q Consensus       257 ~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~  335 (346)
                      .+.++|.++....+++.||+..|||+-.                   +.+++.. .+|. .+.+-+||++|. .++....
T Consensus       400 vLd~Hpfn~ri~msag~dgst~iwdi~e-------------------g~pik~y~~gh~-kl~d~kFSqdgt-s~~lsd~  458 (1113)
T KOG0644|consen  400 VLDVHPFNPRIAMSAGYDGSTIIWDIWE-------------------GIPIKHYFIGHG-KLVDGKFSQDGT-SIALSDD  458 (1113)
T ss_pred             eeeecCCCcHhhhhccCCCceEeeeccc-------------------CCcceeeecccc-eeeccccCCCCc-eEecCCC
Confidence            9999999977788999999999999987                   4444433 3444 467788999987 5666666


Q ss_pred             CCeEEEee
Q 019059          336 DGRVRNHM  343 (346)
Q Consensus       336 d~~v~vw~  343 (346)
                      -|.++|..
T Consensus       459 hgql~i~g  466 (1113)
T KOG0644|consen  459 HGQLYILG  466 (1113)
T ss_pred             CCceEEec
Confidence            67777654

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.69  E-value=6.4e-17  Score=132.02  Aligned_cols=193  Identities=14%  Similarity=0.109  Sum_probs=163.7

Q ss_pred             CceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCC
Q 019059          121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSM  200 (346)
Q Consensus       121 ~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  200 (346)
                      -.-..+.++.+|++ ++.++..|.|..+|..+.....++...+      .|.++.|..+.+++++ .....++|||-. |
T Consensus       130 FGPY~~~ytrnGrh-lllgGrKGHlAa~Dw~t~~L~~Ei~v~E------tv~Dv~~LHneq~~AV-AQK~y~yvYD~~-G  200 (545)
T KOG1272|consen  130 FGPYHLDYTRNGRH-LLLGGRKGHLAAFDWVTKKLHFEINVME------TVRDVTFLHNEQFFAV-AQKKYVYVYDNN-G  200 (545)
T ss_pred             cCCeeeeecCCccE-EEecCCccceeeeecccceeeeeeehhh------hhhhhhhhcchHHHHh-hhhceEEEecCC-C
Confidence            34578899999997 7777789999999999877655555433      7889999876665554 567789999955 7


Q ss_pred             Cccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEE
Q 019059          201 GKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNL  279 (346)
Q Consensus       201 ~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~i  279 (346)
                      ..++.+..-. |..+.|-|..- +|++++..|.++.-|+.. ++.+..+..-.+.+..++-+|-+ ..+-+|...|+|.+
T Consensus       201 tElHClk~~~~v~rLeFLPyHf-LL~~~~~~G~L~Y~DVS~-GklVa~~~t~~G~~~vm~qNP~N-aVih~GhsnGtVSl  277 (545)
T KOG1272|consen  201 TELHCLKRHIRVARLEFLPYHF-LLVAASEAGFLKYQDVST-GKLVASIRTGAGRTDVMKQNPYN-AVIHLGHSNGTVSL  277 (545)
T ss_pred             cEEeehhhcCchhhhcccchhh-eeeecccCCceEEEeech-hhhhHHHHccCCccchhhcCCcc-ceEEEcCCCceEEe
Confidence            7777776333 99999999884 999999999999999998 66788888778889999999999 89999999999999


Q ss_pred             EecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          280 WLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       280 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      |....                   .+++..+..|.++|.+|++.++|. ++||.+.|..++|||+.
T Consensus       278 WSP~s-------------------kePLvKiLcH~g~V~siAv~~~G~-YMaTtG~Dr~~kIWDlR  323 (545)
T KOG1272|consen  278 WSPNS-------------------KEPLVKILCHRGPVSSIAVDRGGR-YMATTGLDRKVKIWDLR  323 (545)
T ss_pred             cCCCC-------------------cchHHHHHhcCCCcceEEECCCCc-EEeecccccceeEeeec
Confidence            99998                   888888889999999999999997 99999999999999985

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.68  E-value=6.7e-15  Score=113.50  Aligned_cols=148  Identities=15%  Similarity=0.304  Sum_probs=105.4

Q ss_pred             EEEEeCCCCCcEEEEec---C-------CeEEEEEccCC-Cccceee--ccc-eeEEEeCCCCCcEEE-EecCCCeEEEE
Q 019059          172 SGGAWDPHDVNAVAATC---E-------SSVQFWDLRSM-GKTNSIE--HAH-VRNVDYDTKKKHLLV-TAADESGIHLW  236 (346)
Q Consensus       172 ~~~~~~~~~~~l~~~~~---d-------~~i~i~d~~~~-~~~~~~~--~~~-v~~~~~~~~~~~~l~-~~~~dg~i~i~  236 (346)
                      ..+.|+|+|.+|++-..   |       +...+|.++.. .....+.  ... |.+++|+|++..+++ .|..++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            46789999988776543   1       33555655432 2333332  222 999999999984433 34567799999


Q ss_pred             EcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecC---CCeEEEEecCCCCCCCCCcccccCCccccccccccccccc
Q 019059          237 DLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGT---DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDY  313 (346)
Q Consensus       237 d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (346)
                      |++  ..++..+.  ...++.+.|+|+| ++|++++.   .|.|.+||++.                   .+.+.... |
T Consensus        89 d~~--~~~i~~~~--~~~~n~i~wsP~G-~~l~~~g~~n~~G~l~~wd~~~-------------------~~~i~~~~-~  143 (194)
T PF08662_consen   89 DVK--GKKIFSFG--TQPRNTISWSPDG-RFLVLAGFGNLNGDLEFWDVRK-------------------KKKISTFE-H  143 (194)
T ss_pred             cCc--ccEeEeec--CCCceEEEECCCC-CEEEEEEccCCCcEEEEEECCC-------------------CEEeeccc-c
Confidence            997  44566654  5678899999999 88888764   46799999998                   67776654 3


Q ss_pred             cceeeEEEeCCCCCcEEEEee------cCCeEEEeeecC
Q 019059          314 EDSVYGLAWSSREPWIFASLS------YDGRVRNHMLEK  346 (346)
Q Consensus       314 ~~~v~~~~~~~~~~~~l~s~~------~d~~v~vw~~~~  346 (346)
                      . .++.++|+|+|+ +|+++.      .|..++||+.+|
T Consensus       144 ~-~~t~~~WsPdGr-~~~ta~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  144 S-DATDVEWSPDGR-YLATATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             C-cEEEEEEcCCCC-EEEEEEeccceeccccEEEEEecC
Confidence            3 378999999998 555554      388899999875

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.68  E-value=6.1e-14  Score=127.41  Aligned_cols=294  Identities=14%  Similarity=0.146  Sum_probs=184.2

Q ss_pred             CCCCeEEEEEecCCCCe---EEEee-eeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeee
Q 019059           39 KEENEVHLLRLSSGGTE---LICEG-LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIA  114 (346)
Q Consensus        39 ~~~~~i~~~~~~~~~~~---~~~~~-~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~  114 (346)
                      +.+|.|.+|+.....+.   ..... ...-...+.++.+.+.+..++++    +.||.|++.+++.....+.  .....+
T Consensus      1068 S~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~----t~DG~v~~~~id~~~~~~~--~~~~~r 1141 (1431)
T KOG1240|consen 1068 SDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS----TKDGSVRVLRIDHYNVSKR--VATQVR 1141 (1431)
T ss_pred             cCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE----cCCCeEEEEEccccccccc--eeeeee
Confidence            57899999998764332   22222 22245789999999999888885    6999999999983211111  111112


Q ss_pred             eeecc-CC-ceEEEEeecCCCC-cEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCe
Q 019059          115 ALDAH-VG-KINCVLWWSSGRH-DKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESS  191 (346)
Q Consensus       115 ~~~~~-~~-~i~~~~~~~~~~~-~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  191 (346)
                      ....+ .+ -|..-+|...... .++.+..-+.|..||++..............|   .|++++.+|.+..++.|+..|.
T Consensus      1142 i~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG---~vTSi~idp~~~WlviGts~G~ 1218 (1431)
T KOG1240|consen 1142 IPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG---LVTSIVIDPWCNWLVIGTSRGQ 1218 (1431)
T ss_pred             cccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc---ceeEEEecCCceEEEEecCCce
Confidence            22222 22 3334445443333 45666667899999998766555554444333   8999999999999999999999


Q ss_pred             EEEEEccCCCccceeeccc---eeEEEeCCCC---CcEEEEec-CCCeEEEEEcccCCcceeeecCC-------------
Q 019059          192 VQFWDLRSMGKTNSIEHAH---VRNVDYDTKK---KHLLVTAA-DESGIHLWDLRMLKAPIQELPGH-------------  251 (346)
Q Consensus       192 i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~---~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~-------------  251 (346)
                      +.+||+|-+.++.....++   ++.+..+|-.   ...+.+++ ..+.|.+|++.+. .....+...             
T Consensus      1219 l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g-~~~~vl~~s~~~p~ls~~~Ps~ 1297 (1431)
T KOG1240|consen 1219 LVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG-LRQTVLWASDGAPILSYALPSN 1297 (1431)
T ss_pred             EEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccC-cceEEEEcCCCCcchhhhcccc
Confidence            9999999888888777555   6666666543   32444444 5678999999874 333333211             


Q ss_pred             ------CcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCC----------------cccccCCc-------cc-
Q 019059          252 ------THWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELP----------------SESLVESP-------NQ-  301 (346)
Q Consensus       252 ------~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~----------------~~~~~~~~-------~~-  301 (346)
                            .-......+...+ .++.+|+.|..|+.||......-...                .......+       .+ 
T Consensus      1298 ~~~kp~~~~~~~~~~~~~~-~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~ 1376 (1431)
T KOG1240|consen 1298 DARKPDSLAGISCGVCEKN-GFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQ 1376 (1431)
T ss_pred             cCCCCCcccceeeecccCC-ceeeecCCccceeeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhh
Confidence                  0111122233333 68999999999999998765321000                00000000       00 


Q ss_pred             -------------cccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEee
Q 019059          302 -------------RANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHM  343 (346)
Q Consensus       302 -------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~  343 (346)
                                   ........-..|..+|+++++......+|++++.||.|+||.
T Consensus      1377 tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1377 TVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             hcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence                         000001111247788999998877667999999999999994

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=1.9e-14  Score=125.52  Aligned_cols=209  Identities=12%  Similarity=0.179  Sum_probs=128.2

Q ss_pred             ceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEec--CCeEEEEEcCCCCCCceeeecccCCCc
Q 019059           91 YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSID--EENIFLWSLDCSNKNAQVQSKQSSGML  168 (346)
Q Consensus        91 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~  168 (346)
                      ..|.++|.+          +...+.+..+...+.+.+|+|||+.+++++..  ...|.+||+.+++.. .+.  ...+  
T Consensus       176 ~~L~~~D~d----------G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~-~l~--~~~g--  240 (427)
T PRK02889        176 YQLQISDAD----------GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR-VVA--NFKG--  240 (427)
T ss_pred             cEEEEECCC----------CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE-Eee--cCCC--
Confidence            456666654          33334455677889999999999975555532  356999999876432 221  1112  


Q ss_pred             eeeEEEEeCCCCCcEEEE-ecCCeEEEE--EccCCCccceeeccc--eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCc
Q 019059          169 HYLSGGAWDPHDVNAVAA-TCESSVQFW--DLRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA  243 (346)
Q Consensus       169 ~~v~~~~~~~~~~~l~~~-~~d~~i~i~--d~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  243 (346)
                       .....+|+||++.++.. +.++...+|  |+..+. ...+....  .....|+|+|+.+++++..++...+|.+.....
T Consensus       241 -~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g  318 (427)
T PRK02889        241 -SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG  318 (427)
T ss_pred             -CccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC
Confidence             45678999999988754 556665555  554443 33333222  667899999995555555556667776543222


Q ss_pred             ceeeecCCCcceEEEEeCCCCCcEEEEecCCC---eEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEE
Q 019059          244 PIQELPGHTHWTWAVCCNPEYDGFILSAGTDS---TVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGL  320 (346)
Q Consensus       244 ~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  320 (346)
                      ....+...........|+|+| ++|+..+.++   .|.+||+..                   ++.. .+... ......
T Consensus       319 ~~~~lt~~g~~~~~~~~SpDG-~~Ia~~s~~~g~~~I~v~d~~~-------------------g~~~-~lt~~-~~~~~p  376 (427)
T PRK02889        319 AAQRVTFTGSYNTSPRISPDG-KLLAYISRVGGAFKLYVQDLAT-------------------GQVT-ALTDT-TRDESP  376 (427)
T ss_pred             ceEEEecCCCCcCceEECCCC-CEEEEEEccCCcEEEEEEECCC-------------------CCeE-EccCC-CCccCc
Confidence            233333233334567899999 7777665543   699999986                   3322 22222 224678


Q ss_pred             EeCCCCCcEEEEeecCCe
Q 019059          321 AWSSREPWIFASLSYDGR  338 (346)
Q Consensus       321 ~~~~~~~~~l~s~~~d~~  338 (346)
                      .|+|+++.++++....+.
T Consensus       377 ~~spdg~~l~~~~~~~g~  394 (427)
T PRK02889        377 SFAPNGRYILYATQQGGR  394 (427)
T ss_pred             eECCCCCEEEEEEecCCC
Confidence            999999855554444444

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.68  E-value=2.7e-14  Score=110.39  Aligned_cols=301  Identities=15%  Similarity=0.106  Sum_probs=187.2

Q ss_pred             eeEeeeccCCCCcceEEEeecccCCC--------CeEEEEEecCCCCeEEEeeeeccccceEEeeecC---CCCceEEEE
Q 019059           16 ARCISDVKADTDHTSFLTGTLSLKEE--------NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCP---FDQRIFSTV   84 (346)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~g~~~~~~~--------~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~~~~   84 (346)
                      +-+++..+...-...+++|++.+.+.        +.++++++.+.+..-...........+..+.|+.   ++...++- 
T Consensus        12 ~~~~~~C~l~~~~~vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~-   90 (339)
T KOG0280|consen   12 ADPVPICCLCHTRNVLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLD-   90 (339)
T ss_pred             cCCCCccccccccceEEEeeEEecCCCCchheeccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeee-
Confidence            34455555555556889998876544        5677777766432111111112335677888863   33323332 


Q ss_pred             eecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeeccc
Q 019059           85 FSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQS  164 (346)
Q Consensus        85 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~  164 (346)
                        ....|.|.++.......   .....++...+.......++.|++.+.. ++++-.+|.+.+-+.....   ....+..
T Consensus        91 --a~a~G~i~~~r~~~~~s---s~~L~~ls~~ki~~~~~lslD~~~~~~~-i~vs~s~G~~~~v~~t~~~---le~vq~w  161 (339)
T KOG0280|consen   91 --AHARGQIQLYRNDEDES---SVHLRGLSSKKISVVEALSLDISTSGTK-IFVSDSRGSISGVYETEMV---LEKVQTW  161 (339)
T ss_pred             --ccccceEEEEeecccee---eeeecccchhhhhheeeeEEEeeccCce-EEEEcCCCcEEEEecceee---eeecccc
Confidence              25778999998762111   0011111111111223567889999886 6666557888855543221   1122234


Q ss_pred             CCCceeeEEEEeCCCCC-cEEEEecCCeEEEEEccCCC-ccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcc
Q 019059          165 SGMLHYLSGGAWDPHDV-NAVAATCESSVQFWDLRSMG-KTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLR  239 (346)
Q Consensus       165 ~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  239 (346)
                      +.|..++....|+...+ .+++|+.|+.+..||+|..+ .+..-..-|   |.+|.-+|..+..+++|+.|-.|++||.|
T Consensus       162 k~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtR  241 (339)
T KOG0280|consen  162 KVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTR  241 (339)
T ss_pred             cccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehh
Confidence            56777888888876554 56788899999999999443 222212233   89999998877799999999999999999


Q ss_pred             cCCcceeeecCCCcceEEEEeCCCCCc-EEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceee
Q 019059          240 MLKAPIQELPGHTHWTWAVCCNPEYDG-FILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVY  318 (346)
Q Consensus       240 ~~~~~~~~~~~~~~~v~~v~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  318 (346)
                      +.++|+..-. -.+.|..+.++|.-.. +|+++-.+| .+|-+.+....+ +             .......+.|.+-..
T Consensus       242 nm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e-~-------------~~~~~s~~~hdSl~Y  305 (339)
T KOG0280|consen  242 NMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLE-F-------------QIVLPSDKIHDSLCY  305 (339)
T ss_pred             cccCccccCc-cccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccc-h-------------heeeeccccccceee
Confidence            8888876654 3589999999997533 344554454 778777752111 0             124445667888888


Q ss_pred             EEEeCCCCCcEEEEee-cCCeEE-Eee
Q 019059          319 GLAWSSREPWIFASLS-YDGRVR-NHM  343 (346)
Q Consensus       319 ~~~~~~~~~~~l~s~~-~d~~v~-vw~  343 (346)
                      .-.|..... +||+++ .|+.++ +|-
T Consensus       306 G~DWd~~~~-~lATCsFYDk~~~~~Wl  331 (339)
T KOG0280|consen  306 GGDWDSKDS-FLATCSFYDKKIRQLWL  331 (339)
T ss_pred             ccccccccc-eeeeeeccccceeeeee
Confidence            888865543 788876 677755 773

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=4.3e-15  Score=122.21  Aligned_cols=262  Identities=12%  Similarity=0.107  Sum_probs=184.4

Q ss_pred             eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeee-eccCCceEEEEeecCCC-CcE
Q 019059           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL-DAHVGKINCVLWWSSGR-HDK  136 (346)
Q Consensus        59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~-~~~  136 (346)
                      ..+..|++.|+.+.|...|..|++    |+.|..|.+||+.         ...+...+ .+|...|....|.|... .-+
T Consensus       136 ~kL~~H~GcVntV~FN~~Gd~l~S----gSDD~~vv~WdW~---------~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti  202 (559)
T KOG1334|consen  136 KKLNKHKGCVNTVHFNQRGDVLAS----GSDDLQVVVWDWV---------SGSPKLSFESGHCNNVFQAKFIPFSGDRTI  202 (559)
T ss_pred             hcccCCCCccceeeecccCceeec----cCccceEEeehhh---------ccCcccccccccccchhhhhccCCCCCcCc
Confidence            567889999999999999988887    5899999999998         44444444 57888888888887533 236


Q ss_pred             EEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCc-EEEEecCCeEEEEEccCCCccceeec--cc---
Q 019059          137 LVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVN-AVAATCESSVQFWDLRSMGKTNSIEH--AH---  210 (346)
Q Consensus       137 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~--~~---  210 (346)
                      +.++.||.+++=.+.........  .....|...+..++.-|+..+ +.+++.|+.+.-+|++++.+...+..  .+   
T Consensus       203 ~~~s~dgqvr~s~i~~t~~~e~t--~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~  280 (559)
T KOG1334|consen  203 VTSSRDGQVRVSEILETGYVENT--KRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKE  280 (559)
T ss_pred             eeccccCceeeeeeccccceecc--eecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCcc
Confidence            66688999999877644332222  222346678999999888766 77788899999999998765444331  11   


Q ss_pred             ---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCc-----ceeeecC------CCcceEEEEeCCCCCcEEEEecCCCe
Q 019059          211 ---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA-----PIQELPG------HTHWTWAVCCNPEYDGFILSAGTDST  276 (346)
Q Consensus       211 ---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~------~~~~v~~v~~~~~~~~~l~s~~~d~~  276 (346)
                         ...++.+|...+.+++++.|-.+++||.|....     ++..+..      ....|++++++.++..+|++-. |-.
T Consensus       281 ~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn-De~  359 (559)
T KOG1334|consen  281 RVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN-DED  359 (559)
T ss_pred             ceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec-ccc
Confidence               789999999998999999999999999886432     1233322      2356899999988756666655 556


Q ss_pred             EEEEecCCCCCCCCCcccccCCcccccccccc-ccccccc--eeeEEEe-CCCCCcEEEEeecCCeEEEeee
Q 019059          277 VNLWLVSTSNHDELPSESLVESPNQRANSLLN-SYSDYED--SVYGLAW-SSREPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       277 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~v~~~~~-~~~~~~~l~s~~~d~~v~vw~~  344 (346)
                      |+++.-......+.....    +.   ...+. .+++|..  .|..+-| -|... ++++||.-|.|.||+-
T Consensus       360 IYLF~~~~~~G~~p~~~s----~~---~~~~k~vYKGHrN~~TVKgVNFfGPrsE-yVvSGSDCGhIFiW~K  423 (559)
T KOG1334|consen  360 IYLFNKSMGDGSEPDPSS----PR---EQYVKRVYKGHRNSRTVKGVNFFGPRSE-YVVSGSDCGHIFIWDK  423 (559)
T ss_pred             eEEeccccccCCCCCCCc----ch---hhccchhhcccccccccceeeeccCccc-eEEecCccceEEEEec
Confidence            888854442211111100    00   12223 3778864  4777765 46665 8999999999999984

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.67  E-value=5.1e-14  Score=111.21  Aligned_cols=314  Identities=16%  Similarity=0.252  Sum_probs=193.4

Q ss_pred             eeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCC--eEEEeeeecc------------ccceEEeeecCCCCceE
Q 019059           16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGT--ELICEGLFSH------------PNEIWDLSSCPFDQRIF   81 (346)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~h------------~~~v~~~~~~~~~~~l~   81 (346)
                      +..++.+.++-.+.++++|.    ..|.+.++.-....+  ......+..|            ...|+.++|.+++..-.
T Consensus        25 adiis~vef~~~Ge~LatGd----kgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~  100 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGD----KGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAE  100 (433)
T ss_pred             hcceeeEEeecccceEeecC----CCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccE
Confidence            45677788888999999984    567777765554332  1111222223            35688999998765322


Q ss_pred             EEEeecCCcceEEEEecCcccCCCCC--------------------------ccceeeeee-eccCCceEEEEeecCCCC
Q 019059           82 STVFSTGESYGAAIWQIPELYGQLNS--------------------------PQLERIAAL-DAHVGKINCVLWWSSGRH  134 (346)
Q Consensus        82 ~~~~~~~~d~~i~vw~~~~~~~~~~~--------------------------~~~~~~~~~-~~~~~~i~~~~~~~~~~~  134 (346)
                      ...  ..+|.+|++|.+.+.......                          ....+.+.+ .+|+.-|.+++++.|.. 
T Consensus       101 FLl--stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E-  177 (433)
T KOG1354|consen  101 FLL--STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE-  177 (433)
T ss_pred             EEE--ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc-
Confidence            111  359999999998755322100                          001111111 35788899999999988 


Q ss_pred             cEEEEecCCeEEEEEcCCCCCCceeeecc---cCCCceeeEEEEeCCCCCcEEE-EecCCeEEEEEccCCCcc----cee
Q 019059          135 DKLVSIDEENIFLWSLDCSNKNAQVQSKQ---SSGMLHYLSGGAWDPHDVNAVA-ATCESSVQFWDLRSMGKT----NSI  206 (346)
Q Consensus       135 ~~~~~~~d~~i~vwd~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~----~~~  206 (346)
                       .+.+++|=.|.+|+++...+...+..-.   ......-|++..|+|....+++ .+..|+|++.|++....-    ..+
T Consensus       178 -t~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlf  256 (433)
T KOG1354|consen  178 -TFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLF  256 (433)
T ss_pred             -eEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhh
Confidence             5666678999999998654444333222   1122335788899997666554 456899999999943210    111


Q ss_pred             e-----------ccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCc------------ce---EE
Q 019059          207 E-----------HAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTH------------WT---WA  257 (346)
Q Consensus       207 ~-----------~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------------~v---~~  257 (346)
                      .           .+-   |..+.|+++|+ ++++-.. -+|++||+....+|+.++.-|..            .|   ..
T Consensus       257 Eepedp~~rsffseiIsSISDvKFs~sGr-yilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFe  334 (433)
T KOG1354|consen  257 EEPEDPSSRSFFSEIISSISDVKFSHSGR-YILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFE  334 (433)
T ss_pred             ccccCCcchhhHHHHhhhhhceEEccCCc-EEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeE
Confidence            1           001   88999999998 5554332 58999999776778888876652            11   35


Q ss_pred             EEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCC-ccccccccccccc--------------cccceeeEEEe
Q 019059          258 VCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVES-PNQRANSLLNSYS--------------DYEDSVYGLAW  322 (346)
Q Consensus       258 v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--------------~~~~~v~~~~~  322 (346)
                      ++|+.++ .+++||+..+.+++++...+..+.......... +.....++.....              .....+...+|
T Consensus       335 c~~sg~~-~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aW  413 (433)
T KOG1354|consen  335 CSWSGND-SYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAW  413 (433)
T ss_pred             EEEcCCc-ceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhhcc
Confidence            7899988 899999999999999976654433222211111 1111111111110              11234667899


Q ss_pred             CCCCCcEEEEeecCCeEEEe
Q 019059          323 SSREPWIFASLSYDGRVRNH  342 (346)
Q Consensus       323 ~~~~~~~l~s~~~d~~v~vw  342 (346)
                      +|... .+|.+.. +.+++|
T Consensus       414 hp~en-~ia~aat-nnlyif  431 (433)
T KOG1354|consen  414 HPKEN-SIAVAAT-NNLYIF  431 (433)
T ss_pred             CCccc-eeeeeec-CceEEe
Confidence            99887 6665554 456665

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=3.9e-15  Score=119.40  Aligned_cols=168  Identities=14%  Similarity=0.128  Sum_probs=133.5

Q ss_pred             eeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCC--CCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeE
Q 019059          115 ALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSN--KNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSV  192 (346)
Q Consensus       115 ~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  192 (346)
                      .+.+|.+.|.++.|+.+++. ++++++|..+++|+++..-  ...+.+......|...|.+++|+.....+++|+.+++|
T Consensus        51 D~~~H~GCiNAlqFS~N~~~-L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V  129 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDRF-LASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV  129 (609)
T ss_pred             hhhhhccccceeeeccCCeE-EeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence            45689999999999999873 6677889999999987421  11111111123356789999999988999999999999


Q ss_pred             EEEEccCCCccceeeccc----eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeee--cCCCcceEEEEeCCCCCc
Q 019059          193 QFWDLRSMGKTNSIEHAH----VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL--PGHTHWTWAVCCNPEYDG  266 (346)
Q Consensus       193 ~i~d~~~~~~~~~~~~~~----v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~v~~v~~~~~~~~  266 (346)
                      .+.|+.+.+.+..+....    |..+..+|..+ .|++.+.++.|.+||.|....++..+  .........+.|+|..+.
T Consensus       130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN-~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~  208 (609)
T KOG4227|consen  130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDN-TLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPA  208 (609)
T ss_pred             EeeecccceeeeeecccCcccceeecccCCCCc-eEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCce
Confidence            999999998877765433    99999999976 99999999999999999744344333  234456788999999999


Q ss_pred             EEEEecCCCeEEEEecCC
Q 019059          267 FILSAGTDSTVNLWLVST  284 (346)
Q Consensus       267 ~l~s~~~d~~i~iwd~~~  284 (346)
                      +|++.+..+-+-+||++.
T Consensus       209 Li~~~~~~~G~~~~D~R~  226 (609)
T KOG4227|consen  209 LILVNSETGGPNVFDRRM  226 (609)
T ss_pred             eEEeccccCCCCceeecc
Confidence            999999999999999997

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.66  E-value=1.7e-14  Score=115.56  Aligned_cols=205  Identities=14%  Similarity=0.122  Sum_probs=151.1

Q ss_pred             cceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecC--C
Q 019059           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDE--E  143 (346)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d--~  143 (346)
                      +.|..++..  +..|+++    -.+|.+++|........     ..++..+..+ ..+..+.-++..++++++||..  .
T Consensus       106 ~~I~gl~~~--dg~Litc----~~sG~l~~~~~k~~d~h-----ss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n  173 (412)
T KOG3881|consen  106 KSIKGLKLA--DGTLITC----VSSGNLQVRHDKSGDLH-----SSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENIN  173 (412)
T ss_pred             ccccchhhc--CCEEEEE----ecCCcEEEEeccCCccc-----cccceeeecC-CceeeeccCCCCCceEecCchhccc
Confidence            445454443  3455554    37889999998732110     2333344333 4577888888888877777877  8


Q ss_pred             eEEEEEcCCCCCCceeeecccC----CCceeeEEEEeCCC--CCcEEEEecCCeEEEEEccCCC-ccceeeccc--eeEE
Q 019059          144 NIFLWSLDCSNKNAQVQSKQSS----GMLHYLSGGAWDPH--DVNAVAATCESSVQFWDLRSMG-KTNSIEHAH--VRNV  214 (346)
Q Consensus       144 ~i~vwd~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~--v~~~  214 (346)
                      .+.+||++..++..........    ...-.++++.|.+.  ...+++++.-+.+++||.+.++ ++..+....  ++++
T Consensus       174 ~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~  253 (412)
T KOG3881|consen  174 ELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISST  253 (412)
T ss_pred             ceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceee
Confidence            9999999976443332221110    01224678889887  6779999999999999999765 555555333  9999


Q ss_pred             EeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          215 DYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       215 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      ...|.++ .+++|..-+.+..||+|........+.+..+.|++|..+|.. .++++++.|..|||+|+.+
T Consensus       254 ~l~p~gn-~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~-~~las~GLDRyvRIhD~kt  321 (412)
T KOG3881|consen  254 GLTPSGN-FIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTH-PVLASCGLDRYVRIHDIKT  321 (412)
T ss_pred             eecCCCc-EEEEecccchhheecccCceeeccccCCccCCcceEEEcCCC-ceEEeeccceeEEEeeccc
Confidence            9999998 899999999999999998555555588899999999999999 9999999999999999998

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.65  E-value=5.7e-15  Score=122.89  Aligned_cols=199  Identities=12%  Similarity=0.166  Sum_probs=140.3

Q ss_pred             eEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEe-----CCCCCcEEEEecCCeEEEEEc
Q 019059          123 INCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAW-----DPHDVNAVAATCESSVQFWDL  197 (346)
Q Consensus       123 i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~l~~~~~d~~i~i~d~  197 (346)
                      +.....+-.|+++.+.-  ...+++|+.+........+.+...... ...+..|     .|.+--++.+-.-|.+.+.|.
T Consensus       126 ~~~~~~~~~gd~lcFnv--g~~lyv~~~~g~~~~~~pi~k~~y~gt-~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp  202 (636)
T KOG2394|consen  126 VTNTNQSGKGDRLCFNV--GRELYVYSYRGAADLSKPIDKREYKGT-SPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDP  202 (636)
T ss_pred             eeeccccCCCCEEEEec--CCeEEEEEccCcchhccchhhhcccCC-CCceecccccccCCCCcceEEeeccCceEEecc
Confidence            44555555666533333  467888888753333222222111001 2233333     455666888888899999998


Q ss_pred             cCCCccceeecc-----c-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCC---------------------------cc
Q 019059          198 RSMGKTNSIEHA-----H-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK---------------------------AP  244 (346)
Q Consensus       198 ~~~~~~~~~~~~-----~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---------------------------~~  244 (346)
                      ...+..+.+...     . ++++.|-|.++.+++++..+|.++++|.....                           .|
T Consensus       203 ~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNP  282 (636)
T KOG2394|consen  203 INFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNP  282 (636)
T ss_pred             hhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCc
Confidence            764322222211     1 99999999988889999999999999764211                           12


Q ss_pred             eeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCC
Q 019059          245 IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS  324 (346)
Q Consensus       245 ~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  324 (346)
                      +..+..-+..|+..+|+||| .+||+.+.||.+||||..+                   .+++..++..-+...|++|||
T Consensus       283 v~~w~~~~g~in~f~FS~DG-~~LA~VSqDGfLRvF~fdt-------------------~eLlg~mkSYFGGLLCvcWSP  342 (636)
T KOG2394|consen  283 VARWHIGEGSINEFAFSPDG-KYLATVSQDGFLRIFDFDT-------------------QELLGVMKSYFGGLLCVCWSP  342 (636)
T ss_pred             cceeEeccccccceeEcCCC-ceEEEEecCceEEEeeccH-------------------HHHHHHHHhhccceEEEEEcC
Confidence            33333344678899999999 9999999999999999998                   777777777778899999999


Q ss_pred             CCCcEEEEeecCCeEEEeeec
Q 019059          325 REPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       325 ~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      ||+ ++++|++|-.|.||.++
T Consensus       343 DGK-yIvtGGEDDLVtVwSf~  362 (636)
T KOG2394|consen  343 DGK-YIVTGGEDDLVTVWSFE  362 (636)
T ss_pred             Ccc-EEEecCCcceEEEEEec
Confidence            998 99999999999999875

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.65  E-value=1.8e-12  Score=110.02  Aligned_cols=256  Identities=11%  Similarity=0.141  Sum_probs=161.1

Q ss_pred             eeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEE-eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEec
Q 019059           20 SDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELIC-EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQI   98 (346)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~   98 (346)
                      .++..+++...+.+........+.|..+.+.++...+.. ............++++|++++|+++.   -.++.|.++++
T Consensus        40 s~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~van---y~~g~v~v~~l  116 (345)
T PF10282_consen   40 SWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVAN---YGGGSVSVFPL  116 (345)
T ss_dssp             CCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEE---TTTTEEEEEEE
T ss_pred             ceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEE---ccCCeEEEEEc
Confidence            345567777777766443336789999999988444433 33332445667899999999999985   45778999999


Q ss_pred             CcccCCCCCccceeeeeee----------ccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCc
Q 019059           99 PELYGQLNSPQLERIAALD----------AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGML  168 (346)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~----------~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  168 (346)
                      ....     ........+.          .......++.|+|++++++++.-....|.+|+++................-
T Consensus       117 ~~~g-----~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G  191 (345)
T PF10282_consen  117 DDDG-----SLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPG  191 (345)
T ss_dssp             CTTS-----EEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTT
T ss_pred             cCCc-----ccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccC
Confidence            7310     0111111110          123457899999999975555544569999999865422211111111122


Q ss_pred             eeeEEEEeCCCCCcEEEEec-CCeEEEEEcc--CCCc--cceee---c---c--ceeEEEeCCCCCcEEEEecCCCeEEE
Q 019059          169 HYLSGGAWDPHDVNAVAATC-ESSVQFWDLR--SMGK--TNSIE---H---A--HVRNVDYDTKKKHLLVTAADESGIHL  235 (346)
Q Consensus       169 ~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~--~~~~--~~~~~---~---~--~v~~~~~~~~~~~~l~~~~~dg~i~i  235 (346)
                      .....++|+|+++++++... ++.|.++++.  .+..  ...+.   .   +  ....|+++|++++++++......|.+
T Consensus       192 ~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~v  271 (345)
T PF10282_consen  192 SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISV  271 (345)
T ss_dssp             SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEE
T ss_pred             CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEE
Confidence            35788999999999888875 7889999988  3321  11111   1   1  17889999999977777777889999


Q ss_pred             EEcccCCcce---eeecCCCcceEEEEeCCCCCcEEEEec-CCCeEEEEecCC
Q 019059          236 WDLRMLKAPI---QELPGHTHWTWAVCCNPEYDGFILSAG-TDSTVNLWLVST  284 (346)
Q Consensus       236 ~d~~~~~~~~---~~~~~~~~~v~~v~~~~~~~~~l~s~~-~d~~i~iwd~~~  284 (346)
                      |++......+   ..+.........+.++|+| ++|+++. .++.|.+|++..
T Consensus       272 f~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g-~~l~Va~~~s~~v~vf~~d~  323 (345)
T PF10282_consen  272 FDLDPATGTLTLVQTVPTGGKFPRHFAFSPDG-RYLYVANQDSNTVSVFDIDP  323 (345)
T ss_dssp             EEECTTTTTEEEEEEEEESSSSEEEEEE-TTS-SEEEEEETTTTEEEEEEEET
T ss_pred             EEEecCCCceEEEEEEeCCCCCccEEEEeCCC-CEEEEEecCCCeEEEEEEeC
Confidence            9995322222   3333334457899999999 7666655 567999998753

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.64  E-value=2.6e-13  Score=118.91  Aligned_cols=238  Identities=11%  Similarity=0.122  Sum_probs=142.5

Q ss_pred             eEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCc
Q 019059           43 EVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGK  122 (346)
Q Consensus        43 ~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (346)
                      ++.+++.+..+.    +.+..+...+....|+|+++.|+.+.... ....|.+||+.         .++. ..+....+.
T Consensus       199 ~l~i~d~dG~~~----~~l~~~~~~~~~p~wSPDG~~La~~s~~~-g~~~L~~~dl~---------tg~~-~~lt~~~g~  263 (448)
T PRK04792        199 QLMIADYDGYNE----QMLLRSPEPLMSPAWSPDGRKLAYVSFEN-RKAEIFVQDIY---------TQVR-EKVTSFPGI  263 (448)
T ss_pred             EEEEEeCCCCCc----eEeecCCCcccCceECCCCCEEEEEEecC-CCcEEEEEECC---------CCCe-EEecCCCCC
Confidence            455555444322    23445677888999999999998864321 22367888876         2222 122222333


Q ss_pred             eEEEEeecCCCCcEEEEecCCe--EEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec-C--CeEEEEEc
Q 019059          123 INCVLWWSSGRHDKLVSIDEEN--IFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-E--SSVQFWDL  197 (346)
Q Consensus       123 i~~~~~~~~~~~~~~~~~~d~~--i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--~~i~i~d~  197 (346)
                      .....|+|||+.++++...++.  |+++|+.+++. ..+..     +.......+|+||++.++..+. +  ..|+++|+
T Consensus       264 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~-----~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl  337 (448)
T PRK04792        264 NGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITR-----HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNL  337 (448)
T ss_pred             cCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECcc-----CCCCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence            4578999999986666665664  77778775532 22111     1224566799999998887764 3  35777788


Q ss_pred             cCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCe--EEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEE-EecC
Q 019059          198 RSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESG--IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFIL-SAGT  273 (346)
Q Consensus       198 ~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~-s~~~  273 (346)
                      .+++.......+. ....+|+|+|+.++++...++.  |.++|+.. + ....+... .......|+|+| ..|+ +...
T Consensus       338 ~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~-g-~~~~lt~~-~~d~~ps~spdG-~~I~~~~~~  413 (448)
T PRK04792        338 ASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLET-G-AMQVLTST-RLDESPSVAPNG-TMVIYSTTY  413 (448)
T ss_pred             CCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCC-C-CeEEccCC-CCCCCceECCCC-CEEEEEEec
Confidence            7776433222233 5567999999955555554554  55567665 2 23333322 122345799999 5554 4444


Q ss_pred             CCe--EEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCC
Q 019059          274 DST--VNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSR  325 (346)
Q Consensus       274 d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  325 (346)
                      ++.  +.+++..                    +.....+..+.+.+...+|+|-
T Consensus       414 ~g~~~l~~~~~~--------------------G~~~~~l~~~~g~~~~p~Wsp~  447 (448)
T PRK04792        414 QGKQVLAAVSID--------------------GRFKARLPAGQGEVKSPAWSPF  447 (448)
T ss_pred             CCceEEEEEECC--------------------CCceEECcCCCCCcCCCccCCC
Confidence            443  6666664                    4455555555556778889873

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.63  E-value=3.7e-14  Score=112.00  Aligned_cols=251  Identities=16%  Similarity=0.274  Sum_probs=172.7

Q ss_pred             cccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeecc------------CCceEEEEeecC
Q 019059           64 HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH------------VGKINCVLWWSS  131 (346)
Q Consensus        64 h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~------------~~~i~~~~~~~~  131 (346)
                      ..+-|.++.|...|.+|++    |..+|.|-++.-+....    ........+..|            ...|..+.|.++
T Consensus        24 eadiis~vef~~~Ge~Lat----GdkgGRVv~f~r~~~~~----~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~   95 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLAT----GDKGGRVVLFEREKLYK----GEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDD   95 (433)
T ss_pred             hhcceeeEEeecccceEee----cCCCCeEEEeecccccc----cceeeeeeeeccCcccchhhhhhhhhhhhhceecCC
Confidence            3467899999999999988    46888999987653221    011222233333            356889999887


Q ss_pred             CCC-cEEEEecCCeEEEEEcCCCCCCc------------------ee-------------eecccCCCceeeEEEEeCCC
Q 019059          132 GRH-DKLVSIDEENIFLWSLDCSNKNA------------------QV-------------QSKQSSGMLHYLSGGAWDPH  179 (346)
Q Consensus       132 ~~~-~~~~~~~d~~i~vwd~~~~~~~~------------------~~-------------~~~~~~~~~~~v~~~~~~~~  179 (346)
                      +.. .++.++.|.+|++|.+.......                  ..             .......|..-++++.++.|
T Consensus        96 ~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD  175 (433)
T KOG1354|consen   96 GNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSD  175 (433)
T ss_pred             CCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCc
Confidence            653 35566789999999987543221                  00             00113567778999999998


Q ss_pred             CCcEEEEecCCeEEEEEccCCCcc---ceeeccc-------eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcce---e
Q 019059          180 DVNAVAATCESSVQFWDLRSMGKT---NSIEHAH-------VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPI---Q  246 (346)
Q Consensus       180 ~~~l~~~~~d~~i~i~d~~~~~~~---~~~~~~~-------v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---~  246 (346)
                      ...++++ .|-.|.+|.+.-....   ..+++..       |++..|+|...++++-.+..|+|++.|+|....+.   .
T Consensus       176 ~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsK  254 (433)
T KOG1354|consen  176 KETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSK  254 (433)
T ss_pred             cceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhh
Confidence            8877665 5778999998744322   2223222       99999999988889989999999999999532111   1


Q ss_pred             ee------------cCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccccccc
Q 019059          247 EL------------PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYE  314 (346)
Q Consensus       247 ~~------------~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (346)
                      .+            ..-...|..+.|++.| +++++-.. -+|++||++.                  ..+++.+.+-|.
T Consensus       255 lfEepedp~~rsffseiIsSISDvKFs~sG-ryilsRDy-ltvk~wD~nm------------------e~~pv~t~~vh~  314 (433)
T KOG1354|consen  255 LFEEPEDPSSRSFFSEIISSISDVKFSHSG-RYILSRDY-LTVKLWDLNM------------------EAKPVETYPVHE  314 (433)
T ss_pred             hhccccCCcchhhHHHHhhhhhceEEccCC-cEEEEecc-ceeEEEeccc------------------cCCcceEEeehH
Confidence            11            1222567889999999 99987654 5899999976                  245555554442


Q ss_pred             c------------ee---eEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059          315 D------------SV---YGLAWSSREPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       315 ~------------~v---~~~~~~~~~~~~l~s~~~d~~v~vw~~  344 (346)
                      .            .|   ..++|+.++. .+++|+....++++++
T Consensus       315 ~lr~kLc~lYEnD~IfdKFec~~sg~~~-~v~TGsy~n~frvf~~  358 (433)
T KOG1354|consen  315 YLRSKLCSLYENDAIFDKFECSWSGNDS-YVMTGSYNNVFRVFNL  358 (433)
T ss_pred             hHHHHHHHHhhccchhheeEEEEcCCcc-eEecccccceEEEecC
Confidence            1            12   3578999886 8999999999999985

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.63  E-value=2.4e-13  Score=119.25  Aligned_cols=216  Identities=12%  Similarity=0.110  Sum_probs=135.3

Q ss_pred             CeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCC
Q 019059           42 NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVG  121 (346)
Q Consensus        42 ~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~  121 (346)
                      ..+++++....+    .+.+..+...+...+|+|+++.|+.+...+ ....|.+|++.         .++. ..+..+..
T Consensus       170 ~~l~~~d~~g~~----~~~l~~~~~~~~~p~~Spdg~~la~~~~~~-~~~~i~v~d~~---------~g~~-~~~~~~~~  234 (417)
T TIGR02800       170 YELQVADYDGAN----PQTITRSREPILSPAWSPDGQKLAYVSFES-GKPEIYVQDLA---------TGQR-EKVASFPG  234 (417)
T ss_pred             ceEEEEcCCCCC----CEEeecCCCceecccCCCCCCEEEEEEcCC-CCcEEEEEECC---------CCCE-EEeecCCC
Confidence            456666554322    234445667789999999999998875332 23579999987         3322 22334555


Q ss_pred             ceEEEEeecCCCCcEEEEecC--CeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecC---CeEEEEE
Q 019059          122 KINCVLWWSSGRHDKLVSIDE--ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE---SSVQFWD  196 (346)
Q Consensus       122 ~i~~~~~~~~~~~~~~~~~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~i~d  196 (346)
                      .+.+++|+|+++.++++...+  ..|++||+.++.. ..+..     +........|+|+++.|+..+..   ..|+++|
T Consensus       235 ~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~-----~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d  308 (417)
T TIGR02800       235 MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTN-----GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMD  308 (417)
T ss_pred             CccceEECCCCCEEEEEECCCCCccEEEEECCCCCE-EECCC-----CCCCCCCEEECCCCCEEEEEECCCCCceEEEEE
Confidence            677899999999755555444  4688888876532 11111     11234456899999988877642   3688888


Q ss_pred             ccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCC---eEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEec
Q 019059          197 LRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADES---GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG  272 (346)
Q Consensus       197 ~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~  272 (346)
                      +.+++......... ...+.|+|++. .++.++.++   .|.+||+.. + ....+... .......|+|++ ..|+..+
T Consensus       309 ~~~~~~~~l~~~~~~~~~~~~spdg~-~i~~~~~~~~~~~i~~~d~~~-~-~~~~l~~~-~~~~~p~~spdg-~~l~~~~  383 (417)
T TIGR02800       309 ADGGEVRRLTFRGGYNASPSWSPDGD-LIAFVHREGGGFNIAVMDLDG-G-GERVLTDT-GLDESPSFAPNG-RMILYAT  383 (417)
T ss_pred             CCCCCEEEeecCCCCccCeEECCCCC-EEEEEEccCCceEEEEEeCCC-C-CeEEccCC-CCCCCceECCCC-CEEEEEE
Confidence            88766433222233 77889999998 555555544   788888875 3 23333322 234556899999 6666655


Q ss_pred             CCC---eEEEEecC
Q 019059          273 TDS---TVNLWLVS  283 (346)
Q Consensus       273 ~d~---~i~iwd~~  283 (346)
                      .++   .+.+.+..
T Consensus       384 ~~~~~~~l~~~~~~  397 (417)
T TIGR02800       384 TRGGRGVLGLVSTD  397 (417)
T ss_pred             eCCCcEEEEEEECC
Confidence            543   35555543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=9.8e-13  Score=114.38  Aligned_cols=232  Identities=12%  Similarity=0.082  Sum_probs=136.7

Q ss_pred             CCceEEEEeecCC-----cceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEE--EEecC--CeEEE
Q 019059           77 DQRIFSTVFSTGE-----SYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKL--VSIDE--ENIFL  147 (346)
Q Consensus        77 ~~~l~~~~~~~~~-----d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~d--~~i~v  147 (346)
                      +.+++.+....+.     ...|.+.|.+          +...+.+......+..-.|+|||+.+.+  ++..+  ..|.+
T Consensus       146 ~~~iayv~~~~~~~~~~~~~~l~~~d~d----------G~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~  215 (428)
T PRK01029        146 SGKIIFSLSTTNSDTELKQGELWSVDYD----------GQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFL  215 (428)
T ss_pred             cCEEEEEEeeCCcccccccceEEEEcCC----------CCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEE
Confidence            5566655433332     2345555554          2333445455566778899999987433  45333  46888


Q ss_pred             EEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec-CC----eEEEEEccCC--Cccceeeccc---eeEEEeC
Q 019059          148 WSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-ES----SVQFWDLRSM--GKTNSIEHAH---VRNVDYD  217 (346)
Q Consensus       148 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~----~i~i~d~~~~--~~~~~~~~~~---v~~~~~~  217 (346)
                      .++.+++.. .+..  ..+   .....+|+|||+.|+..+. +|    .+.+|++..+  .....+....   ....+|+
T Consensus       216 ~~l~~g~~~-~lt~--~~g---~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wS  289 (428)
T PRK01029        216 GSLENPAGK-KILA--LQG---NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFS  289 (428)
T ss_pred             EECCCCCce-Eeec--CCC---CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEEC
Confidence            888766432 2221  122   3456799999999887763 22    3444777653  1222333222   5678999


Q ss_pred             CCCCcEEEEecCCCeEEEEE--cccCCcceeeecCCCcceEEEEeCCCCCcEEEEecC-C--CeEEEEecCCCCCCCCCc
Q 019059          218 TKKKHLLVTAADESGIHLWD--LRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGT-D--STVNLWLVSTSNHDELPS  292 (346)
Q Consensus       218 ~~~~~~l~~~~~dg~i~i~d--~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~-d--~~i~iwd~~~~~~~~~~~  292 (346)
                      |||+.++++...+|...+|.  +.........+..+...+....|+|+| +.|+..+. +  ..|.+||+.+        
T Consensus       290 PDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG-~~Laf~~~~~g~~~I~v~dl~~--------  360 (428)
T PRK01029        290 PDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDG-KKIAFCSVIKGVRQICVYDLAT--------  360 (428)
T ss_pred             CCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCC-CEEEEEEcCCCCcEEEEEECCC--------
Confidence            99985555555567555554  432122344455455667788999999 76665443 2  3689999987        


Q ss_pred             ccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeec--CCeEEEeeec
Q 019059          293 ESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSY--DGRVRNHMLE  345 (346)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~--d~~v~vw~~~  345 (346)
                                 ++.. .+......+....|+|+|+.++++...  ...|++++++
T Consensus       361 -----------g~~~-~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~  403 (428)
T PRK01029        361 -----------GRDY-QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLI  403 (428)
T ss_pred             -----------CCeE-EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence                       3332 232223346778999999855545443  3457777764

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=9.6e-13  Score=115.62  Aligned_cols=225  Identities=12%  Similarity=0.114  Sum_probs=138.2

Q ss_pred             eeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEE
Q 019059           60 GLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS  139 (346)
Q Consensus        60 ~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  139 (346)
                      .+..+...+...+|+|+++.|+.+.... ....|.+|++.         .++. ..+....+.+....|+|+|+.++++.
T Consensus       193 ~l~~~~~~~~~p~wSpDG~~la~~s~~~-~~~~l~~~~l~---------~g~~-~~l~~~~g~~~~~~~SpDG~~la~~~  261 (430)
T PRK00178        193 TLLQSREPILSPRWSPDGKRIAYVSFEQ-KRPRIFVQNLD---------TGRR-EQITNFEGLNGAPAWSPDGSKLAFVL  261 (430)
T ss_pred             EEecCCCceeeeeECCCCCEEEEEEcCC-CCCEEEEEECC---------CCCE-EEccCCCCCcCCeEECCCCCEEEEEE
Confidence            3445677899999999999998764221 23468888987         2222 22323334456789999999766555


Q ss_pred             ecCC--eEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec-C--CeEEEEEccCCCccceeeccc-eeE
Q 019059          140 IDEE--NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-E--SSVQFWDLRSMGKTNSIEHAH-VRN  213 (346)
Q Consensus       140 ~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--~~i~i~d~~~~~~~~~~~~~~-v~~  213 (346)
                      ..++  .|+++|+.++.. ..+..     +........|+|+++.++..+. +  ..|+++|+.+++.......+. ...
T Consensus       262 ~~~g~~~Iy~~d~~~~~~-~~lt~-----~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~  335 (430)
T PRK00178        262 SKDGNPEIYVMDLASRQL-SRVTN-----HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNAR  335 (430)
T ss_pred             ccCCCceEEEEECCCCCe-EEccc-----CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccc
Confidence            4444  688889886542 22211     1223556789999998877764 3  368888887776433222223 556


Q ss_pred             EEeCCCCCcEEEEecCCC--eEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEec-CCC--eEEEEecCCCCCC
Q 019059          214 VDYDTKKKHLLVTAADES--GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG-TDS--TVNLWLVSTSNHD  288 (346)
Q Consensus       214 ~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~-~d~--~i~iwd~~~~~~~  288 (346)
                      ..|+|+++.++++...++  .|.++|+....  .+.+.. ........|+|+| +.++..+ .++  .|.++++..    
T Consensus       336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~--~~~lt~-~~~~~~p~~spdg-~~i~~~~~~~g~~~l~~~~~~g----  407 (430)
T PRK00178        336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGS--VRILTD-TSLDESPSVAPNG-TMLIYATRQQGRGVLMLVSING----  407 (430)
T ss_pred             eEECCCCCEEEEEEccCCceEEEEEECCCCC--EEEccC-CCCCCCceECCCC-CEEEEEEecCCceEEEEEECCC----
Confidence            789999995444444444  57888887532  333332 2233356899999 6665444 334  455666643    


Q ss_pred             CCCcccccCCccccccccccccccccceeeEEEeCCC
Q 019059          289 ELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSR  325 (346)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  325 (346)
                                      .....+..+.+.+...+|+|.
T Consensus       408 ----------------~~~~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        408 ----------------RVRLPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             ----------------CceEECcCCCCCcCCCccCCC
Confidence                            333344444455777888873

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.60  E-value=8.4e-13  Score=115.81  Aligned_cols=228  Identities=12%  Similarity=0.113  Sum_probs=137.2

Q ss_pred             CCceEEEEeec-CCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEec--CCeEEEEEcCCC
Q 019059           77 DQRIFSTVFST-GESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSID--EENIFLWSLDCS  153 (346)
Q Consensus        77 ~~~l~~~~~~~-~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--d~~i~vwd~~~~  153 (346)
                      +..++.....+ .....|.++|.+          +...+.+..+...+...+|+|+|++++++...  ...|++||+.++
T Consensus       155 ~~~~~~~~~~~~~~~~~l~~~d~~----------g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g  224 (417)
T TIGR02800       155 STRIAYVSKSGKSRRYELQVADYD----------GANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATG  224 (417)
T ss_pred             CCEEEEEEEeCCCCcceEEEEcCC----------CCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence            34444443222 223456777764          22234455566678999999999975555432  357999999865


Q ss_pred             CCCceeeecccCCCceeeEEEEeCCCCCcEEEEe-cC--CeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecC
Q 019059          154 NKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT-CE--SSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAAD  229 (346)
Q Consensus       154 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d--~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~  229 (346)
                      ... .+.  .   +......++|+|+++.++... .+  ..|++||+.+++......... .....|+|+++.++++...
T Consensus       225 ~~~-~~~--~---~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~  298 (417)
T TIGR02800       225 QRE-KVA--S---FPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDR  298 (417)
T ss_pred             CEE-Eee--c---CCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECC
Confidence            422 111  1   122456689999999877554 33  469999998775432222122 5577999999844455444


Q ss_pred             CC--eEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCC---eEEEEecCCCCCCCCCcccccCCcccccc
Q 019059          230 ES--GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDS---TVNLWLVSTSNHDELPSESLVESPNQRAN  304 (346)
Q Consensus       230 dg--~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  304 (346)
                      ++  .|+++|+.. . ....+..+...+..+.|+|++ .+|+..+.++   .|.+||+..                   +
T Consensus       299 ~g~~~iy~~d~~~-~-~~~~l~~~~~~~~~~~~spdg-~~i~~~~~~~~~~~i~~~d~~~-------------------~  356 (417)
T TIGR02800       299 GGSPQIYMMDADG-G-EVRRLTFRGGYNASPSWSPDG-DLIAFVHREGGGFNIAVMDLDG-------------------G  356 (417)
T ss_pred             CCCceEEEEECCC-C-CEEEeecCCCCccCeEECCCC-CEEEEEEccCCceEEEEEeCCC-------------------C
Confidence            44  577777764 2 244455455667788999999 7777777665   788888876                   2


Q ss_pred             ccccccccccceeeEEEeCCCCCcEEEEeecCC--eEEEeee
Q 019059          305 SLLNSYSDYEDSVYGLAWSSREPWIFASLSYDG--RVRNHML  344 (346)
Q Consensus       305 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~--~v~vw~~  344 (346)
                      .. ..+.... ......|+|+++.++++...++  .+++.+.
T Consensus       357 ~~-~~l~~~~-~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~  396 (417)
T TIGR02800       357 GE-RVLTDTG-LDESPSFAPNGRMILYATTRGGRGVLGLVST  396 (417)
T ss_pred             Ce-EEccCCC-CCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence            21 2222111 2345689999984444443333  3445443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.60  E-value=4.8e-13  Score=103.58  Aligned_cols=211  Identities=14%  Similarity=0.162  Sum_probs=142.1

Q ss_pred             CcceEEEEecCcccCCCCCccceeeeee-eccCCceEEEEeec---CCCCcEEEEecCCeEEEEEcCCCCCCceeeeccc
Q 019059           89 ESYGAAIWQIPELYGQLNSPQLERIAAL-DAHVGKINCVLWWS---SGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQS  164 (346)
Q Consensus        89 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~---~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~  164 (346)
                      .-|.+.+|++.+...       .++.++ ....+.+..+.|..   ++...++-.-.+|.|.++..........+.....
T Consensus        44 R~Gkl~Lys~~d~~~-------~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~  116 (339)
T KOG0280|consen   44 RSGKLHLYSLEDMKL-------SPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSS  116 (339)
T ss_pred             eccceEEEeeccccc-------CccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccch
Confidence            346788998873211       111122 12345677888863   3442233334479999998775443333322211


Q ss_pred             CCC-ceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCcc--ceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEc
Q 019059          165 SGM-LHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKT--NSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDL  238 (346)
Q Consensus       165 ~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~  238 (346)
                      ... .....++.|++.+..++++-.+|.+.+-+.......  ...+ +|   +...+|+...++++.+|++|+.+..||+
T Consensus       117 ~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk-~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~  195 (339)
T KOG0280|consen  117 KKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWK-VHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDI  195 (339)
T ss_pred             hhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccc-ccceeeeeeecccCCCceEEecCCCceEEEEEe
Confidence            111 113567789998888999888999886555443322  2344 45   8888898888889999999999999999


Q ss_pred             ccCCcceee-ecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccccccccee
Q 019059          239 RMLKAPIQE-LPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSV  317 (346)
Q Consensus       239 ~~~~~~~~~-~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  317 (346)
                      |.++..+.. .+.|...|.+|.-+|..+.++++|+.|..|++||.+.                  -+++++.-.- .+.|
T Consensus       196 R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRn------------------m~kPl~~~~v-~GGV  256 (339)
T KOG0280|consen  196 RIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRN------------------MGKPLFKAKV-GGGV  256 (339)
T ss_pred             cCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhc------------------ccCccccCcc-ccce
Confidence            955544433 5568999999999988779999999999999999996                  2566654432 3669


Q ss_pred             eEEEeCCCC
Q 019059          318 YGLAWSSRE  326 (346)
Q Consensus       318 ~~~~~~~~~  326 (346)
                      +.+.++|..
T Consensus       257 WRi~~~p~~  265 (339)
T KOG0280|consen  257 WRIKHHPEI  265 (339)
T ss_pred             EEEEecchh
Confidence            999999853

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=9.3e-13  Score=115.43  Aligned_cols=214  Identities=12%  Similarity=0.132  Sum_probs=126.5

Q ss_pred             eEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecC--CeEEEEEcCCCCCCceeeecccCCCce
Q 019059           92 GAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDE--ENIFLWSLDCSNKNAQVQSKQSSGMLH  169 (346)
Q Consensus        92 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~  169 (346)
                      .|.++|.+          +...+.+..+...+....|+|||+++++++..+  ..|.+||+.+++.. .+ . ...+   
T Consensus       199 ~l~i~d~d----------G~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~-~l-t-~~~g---  262 (448)
T PRK04792        199 QLMIADYD----------GYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE-KV-T-SFPG---  262 (448)
T ss_pred             EEEEEeCC----------CCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE-Ee-c-CCCC---
Confidence            56666765          222234556677889999999999766665433  36888898765421 11 1 1111   


Q ss_pred             eeEEEEeCCCCCcEEEE-ecCC--eEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCe--EEEEEcccCCc
Q 019059          170 YLSGGAWDPHDVNAVAA-TCES--SVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESG--IHLWDLRMLKA  243 (346)
Q Consensus       170 ~v~~~~~~~~~~~l~~~-~~d~--~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~--i~i~d~~~~~~  243 (346)
                      .....+|+||++.++.. ..++  .|+++|+.+++......... ....+|+|+++.++++...++.  |+++|+.. + 
T Consensus       263 ~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~-g-  340 (448)
T PRK04792        263 INGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS-G-  340 (448)
T ss_pred             CcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-C-
Confidence            23467999999988765 4455  48888988776433222122 6788999999955555554554  55566654 2 


Q ss_pred             ceeeecCCCcceEEEEeCCCCCcEEEEecC-CCe--EEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEE
Q 019059          244 PIQELPGHTHWTWAVCCNPEYDGFILSAGT-DST--VNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGL  320 (346)
Q Consensus       244 ~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~-d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  320 (346)
                      ....+...........|+|+| .+|+..+. ++.  |.++|+.+                   ++. ..+.... .....
T Consensus       341 ~~~~Lt~~g~~~~~~~~SpDG-~~l~~~~~~~g~~~I~~~dl~~-------------------g~~-~~lt~~~-~d~~p  398 (448)
T PRK04792        341 KVSRLTFEGEQNLGGSITPDG-RSMIMVNRTNGKFNIARQDLET-------------------GAM-QVLTSTR-LDESP  398 (448)
T ss_pred             CEEEEecCCCCCcCeeECCCC-CEEEEEEecCCceEEEEEECCC-------------------CCe-EEccCCC-CCCCc
Confidence            233332222334457899999 66655444 443  45566665                   222 1222111 12345


Q ss_pred             EeCCCCCcEEEEeecCCe--EEEeeec
Q 019059          321 AWSSREPWIFASLSYDGR--VRNHMLE  345 (346)
Q Consensus       321 ~~~~~~~~~l~s~~~d~~--v~vw~~~  345 (346)
                      .|+|+|+.++.+...++.  +++++++
T Consensus       399 s~spdG~~I~~~~~~~g~~~l~~~~~~  425 (448)
T PRK04792        399 SVAPNGTMVIYSTTYQGKQVLAAVSID  425 (448)
T ss_pred             eECCCCCEEEEEEecCCceEEEEEECC
Confidence            799999855555555554  5555554

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.58  E-value=3.2e-12  Score=108.42  Aligned_cols=240  Identities=12%  Similarity=0.064  Sum_probs=146.6

Q ss_pred             CCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCC
Q 019059           88 GESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGM  167 (346)
Q Consensus        88 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~  167 (346)
                      ..++.|.|.|..         +.+.+..+......-..+.++|||++ +++++.|+.|.++|+.+.+...++....    
T Consensus        13 ~~~~~v~viD~~---------t~~~~~~i~~~~~~h~~~~~s~Dgr~-~yv~~rdg~vsviD~~~~~~v~~i~~G~----   78 (369)
T PF02239_consen   13 RGSGSVAVIDGA---------TNKVVARIPTGGAPHAGLKFSPDGRY-LYVANRDGTVSVIDLATGKVVATIKVGG----   78 (369)
T ss_dssp             GGGTEEEEEETT---------T-SEEEEEE-STTEEEEEE-TT-SSE-EEEEETTSEEEEEETTSSSEEEEEE-SS----
T ss_pred             cCCCEEEEEECC---------CCeEEEEEcCCCCceeEEEecCCCCE-EEEEcCCCeEEEEECCcccEEEEEecCC----
Confidence            567899999988         67888888765554456789999997 5555679999999999877555554432    


Q ss_pred             ceeeEEEEeCCCCCcEEEEe-cCCeEEEEEccCCCccceeeccc---------eeEEEeCCCCCcEEEEecCCCeEEEEE
Q 019059          168 LHYLSGGAWDPHDVNAVAAT-CESSVQFWDLRSMGKTNSIEHAH---------VRNVDYDTKKKHLLVTAADESGIHLWD  237 (346)
Q Consensus       168 ~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~---------v~~~~~~~~~~~~l~~~~~dg~i~i~d  237 (346)
                        ...++++++||++++++. .++.+.++|.++.+.+..+..+.         +..+..+|..+.+++.--+.+.|.+.|
T Consensus        79 --~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVd  156 (369)
T PF02239_consen   79 --NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVD  156 (369)
T ss_dssp             --EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEE
T ss_pred             --CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEE
Confidence              678899999999999887 58999999999999888776331         678888888874444555558888889


Q ss_pred             cccCCcceeeecCCCcceEEEEeCCCCCcEEEE-ecCCCeEEEEecCCCCCCCC------Cc---------------ccc
Q 019059          238 LRMLKAPIQELPGHTHWTWAVCCNPEYDGFILS-AGTDSTVNLWLVSTSNHDEL------PS---------------ESL  295 (346)
Q Consensus       238 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s-~~~d~~i~iwd~~~~~~~~~------~~---------------~~~  295 (346)
                      ......................|+|++ ++++. ...++.|.++|..+.+....      ..               +..
T Consensus       157 y~d~~~~~~~~i~~g~~~~D~~~dpdg-ry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~  235 (369)
T PF02239_consen  157 YSDPKNLKVTTIKVGRFPHDGGFDPDG-RYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWAT  235 (369)
T ss_dssp             TTTSSCEEEEEEE--TTEEEEEE-TTS-SEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEE
T ss_pred             eccccccceeeecccccccccccCccc-ceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEee
Confidence            876543333333345567788999999 66544 55567888888876421100      00               000


Q ss_pred             cCC---------------ccccccccccccccccceeeEEEeCCCCCcEEEE---eecCCeEEEeeec
Q 019059          296 VES---------------PNQRANSLLNSYSDYEDSVYGLAWSSREPWIFAS---LSYDGRVRNHMLE  345 (346)
Q Consensus       296 ~~~---------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s---~~~d~~v~vw~~~  345 (346)
                      ...               ......+.+.++.....+ .-+.-+|+++++.+.   +...+.|.++|.+
T Consensus       236 ~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~  302 (369)
T PF02239_consen  236 SGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKK  302 (369)
T ss_dssp             EBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECC
T ss_pred             ccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECc
Confidence            000               011233444444444444 667889999855444   3566889999875

...

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.57  E-value=1e-12  Score=103.99  Aligned_cols=227  Identities=14%  Similarity=0.233  Sum_probs=151.1

Q ss_pred             ccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeee
Q 019059           37 SLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL  116 (346)
Q Consensus        37 ~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~  116 (346)
                      ++..+..+++|---+. ..........-+.++.++.+.++...|++.    -..|++.-+.+.+..+     ....++..
T Consensus        41 ~~s~drtvrv~lkrds-~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg----~~ngtvtefs~sedfn-----km~~~r~~  110 (404)
T KOG1409|consen   41 SVSEDRTVRVWLKRDS-GQYWPSIYHYMPSPCSAMEYVSESRRLYVG----QDNGTVTEFALSEDFN-----KMTFLKDY  110 (404)
T ss_pred             EccccceeeeEEeccc-cccCchhhhhCCCCceEeeeeccceEEEEE----EecceEEEEEhhhhhh-----hcchhhhh
Confidence            3445666666632222 111112222345789999999988888885    3677888887763222     34555667


Q ss_pred             eccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEE
Q 019059          117 DAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWD  196 (346)
Q Consensus       117 ~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d  196 (346)
                      ..|...+..+-|+-...+ +++.+.|..+.---.+.+.....+....      ..+++.+.-.  +.+.|...|.|....
T Consensus       111 ~~h~~~v~~~if~~~~e~-V~s~~~dk~~~~hc~e~~~~lg~Y~~~~------~~t~~~~d~~--~~fvGd~~gqvt~lr  181 (404)
T KOG1409|consen  111 LAHQARVSAIVFSLTHEW-VLSTGKDKQFAWHCTESGNRLGGYNFET------PASALQFDAL--YAFVGDHSGQITMLK  181 (404)
T ss_pred             hhhhcceeeEEecCCcee-EEEeccccceEEEeeccCCcccceEeec------cCCCCceeeE--EEEecccccceEEEE
Confidence            789999999999987775 6666777666544444444333333221      1122222111  344444556666554


Q ss_pred             ccC--CCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEe
Q 019059          197 LRS--MGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSA  271 (346)
Q Consensus       197 ~~~--~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~  271 (346)
                      +..  -..+.++. +|   +.+++|.|... ++++|..|..+.+||+--.+.....+.+|...|..+...+.- +.+.++
T Consensus       182 ~~~~~~~~i~~~~-~h~~~~~~l~Wd~~~~-~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t-~~l~S~  258 (404)
T KOG1409|consen  182 LEQNGCQLITTFN-GHTGEVTCLKWDPGQR-LLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHT-RQLISC  258 (404)
T ss_pred             EeecCCceEEEEc-CcccceEEEEEcCCCc-EEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhh-eeeeec
Confidence            443  33444444 55   99999999887 999999999999999986555667788999999998887777 889999


Q ss_pred             cCCCeEEEEecCCC
Q 019059          272 GTDSTVNLWLVSTS  285 (346)
Q Consensus       272 ~~d~~i~iwd~~~~  285 (346)
                      +.||.|.+|+++..
T Consensus       259 ~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  259 GEDGGIVVWNMNVK  272 (404)
T ss_pred             cCCCeEEEEeccce
Confidence            99999999999864

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.56  E-value=7e-11  Score=94.67  Aligned_cols=252  Identities=13%  Similarity=0.178  Sum_probs=163.5

Q ss_pred             eeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEee-eeccccceEEeeecCCCCceEEEEeecCCcceEEEEec
Q 019059           20 SDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEG-LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQI   98 (346)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~   98 (346)
                      +.+.++++..++.++. ..+.++.+..+++++..+.+.... ...-..+-+.+++++++++++++.|.   .+.|.++-+
T Consensus        43 tyl~~~~~~~~LY~v~-~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~---~g~v~v~p~  118 (346)
T COG2706          43 TYLAVNPDQRHLYVVN-EPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYH---SGSVSVYPL  118 (346)
T ss_pred             ceEEECCCCCEEEEEE-ecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEcc---CceEEEEEc
Confidence            3455677776666653 334578888899987644444322 22222334889999999999998654   468999988


Q ss_pred             CcccCCCCCccceeeeeeeccCCc----------eEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCc
Q 019059           99 PELYGQLNSPQLERIAALDAHVGK----------INCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGML  168 (346)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~----------i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  168 (346)
                      .+.      +..........|.+.          +.+..+.|+++++++..-.--.|.+|++..+.........-  ..-
T Consensus       119 ~~d------G~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v--~~G  190 (346)
T COG2706         119 QAD------GSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV--KPG  190 (346)
T ss_pred             ccC------CccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc--CCC
Confidence            632      122222223344444          88999999999644444234589999998654322222111  122


Q ss_pred             eeeEEEEeCCCCCcEEEEec-CCeEEEEEccCC-Cccceee------c---cc--eeEEEeCCCCCcEEEEecCCCeEEE
Q 019059          169 HYLSGGAWDPHDVNAVAATC-ESSVQFWDLRSM-GKTNSIE------H---AH--VRNVDYDTKKKHLLVTAADESGIHL  235 (346)
Q Consensus       169 ~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~-~~~~~~~------~---~~--v~~~~~~~~~~~~l~~~~~dg~i~i  235 (346)
                      .....+.|+|+++.....+. +++|.+|..... ..+..++      .   +.  ...|..+|+|+++.++--....|.+
T Consensus       191 ~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~  270 (346)
T COG2706         191 AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV  270 (346)
T ss_pred             CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence            36788999999999888886 899999998864 2222222      1   11  8889999999955555444557888


Q ss_pred             EEcccCCcceeee---cCCCcceEEEEeCCCCCcEEEEecCC-CeEEEEecCC
Q 019059          236 WDLRMLKAPIQEL---PGHTHWTWAVCCNPEYDGFILSAGTD-STVNLWLVST  284 (346)
Q Consensus       236 ~d~~~~~~~~~~~---~~~~~~v~~v~~~~~~~~~l~s~~~d-~~i~iwd~~~  284 (346)
                      |.+......+..+   ..+....+...|+|.+ ++|+++..| ..|.+|.+..
T Consensus       271 f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g-~~Liaa~q~sd~i~vf~~d~  322 (346)
T COG2706         271 FSVDPDGGKLELVGITPTEGQFPRDFNINPSG-RFLIAANQKSDNITVFERDK  322 (346)
T ss_pred             EEEcCCCCEEEEEEEeccCCcCCccceeCCCC-CEEEEEccCCCcEEEEEEcC
Confidence            8887644333322   2344557888999999 888777765 4799998765

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=2.2e-12  Score=113.39  Aligned_cols=213  Identities=13%  Similarity=0.116  Sum_probs=128.4

Q ss_pred             eEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecC--CeEEEEEcCCCCCCceeeecccCCCce
Q 019059           92 GAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDE--ENIFLWSLDCSNKNAQVQSKQSSGMLH  169 (346)
Q Consensus        92 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~  169 (346)
                      .|.++|.+          +...+.+..+...+....|+|||+++++++..+  ..|.+|++.+++.. .+.  ...+   
T Consensus       180 ~l~~~d~~----------g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~-~l~--~~~g---  243 (430)
T PRK00178        180 TLQRSDYD----------GARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE-QIT--NFEG---  243 (430)
T ss_pred             EEEEECCC----------CCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE-Ecc--CCCC---
Confidence            46666665          233344556777899999999999765655332  47899999866421 111  1111   


Q ss_pred             eeEEEEeCCCCCcEEEEe-cCC--eEEEEEccCCCccceeeccc--eeEEEeCCCCCcEEEEecCCC--eEEEEEcccCC
Q 019059          170 YLSGGAWDPHDVNAVAAT-CES--SVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAADES--GIHLWDLRMLK  242 (346)
Q Consensus       170 ~v~~~~~~~~~~~l~~~~-~d~--~i~i~d~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~  242 (346)
                      ......|+|+|+.++... .++  .|+++|+.+++... +....  .....|+|+++.++++...++  .|+++|+.. +
T Consensus       244 ~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~-g  321 (430)
T PRK00178        244 LNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG-G  321 (430)
T ss_pred             CcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC-C
Confidence            345689999999887554 344  68889998876433 32222  667899999985555554444  466667664 3


Q ss_pred             cceeeecCCCcceEEEEeCCCCCcEEEEecC-CC--eEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeE
Q 019059          243 APIQELPGHTHWTWAVCCNPEYDGFILSAGT-DS--TVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYG  319 (346)
Q Consensus       243 ~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  319 (346)
                      . ...+...........|+|+| ..|+..+. ++  .|.+||+.+                   ++. ..+.. ......
T Consensus       322 ~-~~~lt~~~~~~~~~~~Spdg-~~i~~~~~~~~~~~l~~~dl~t-------------------g~~-~~lt~-~~~~~~  378 (430)
T PRK00178        322 R-AERVTFVGNYNARPRLSADG-KTLVMVHRQDGNFHVAAQDLQR-------------------GSV-RILTD-TSLDES  378 (430)
T ss_pred             C-EEEeecCCCCccceEECCCC-CEEEEEEccCCceEEEEEECCC-------------------CCE-EEccC-CCCCCC
Confidence            2 33332222334457899999 66665543 33  578888876                   322 11211 111235


Q ss_pred             EEeCCCCCcEEEEeecCCe--EEEeeec
Q 019059          320 LAWSSREPWIFASLSYDGR--VRNHMLE  345 (346)
Q Consensus       320 ~~~~~~~~~~l~s~~~d~~--v~vw~~~  345 (346)
                      ..|+|+|+.++.+...++.  +.+++++
T Consensus       379 p~~spdg~~i~~~~~~~g~~~l~~~~~~  406 (430)
T PRK00178        379 PSVAPNGTMLIYATRQQGRGVLMLVSIN  406 (430)
T ss_pred             ceECCCCCEEEEEEecCCceEEEEEECC
Confidence            6899999855555544444  4454543

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.55  E-value=3e-12  Score=107.85  Aligned_cols=266  Identities=12%  Similarity=0.104  Sum_probs=175.7

Q ss_pred             ccCCCCcceEEE-eecccCCCCeEEEEEecCCCCeEEEeeeeccc--cceEEeeecCCCCceEEEEeecCCcceEEEEec
Q 019059           22 VKADTDHTSFLT-GTLSLKEENEVHLLRLSSGGTELICEGLFSHP--NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQI   98 (346)
Q Consensus        22 ~~~~~~~~~~~~-g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~   98 (346)
                      +..+++++-++. |+    ..-+|.++++....     ..+..|-  ..|.-.-.+.|-..++..    -.|.+|.+...
T Consensus        57 ik~s~DGqY~lAtG~----YKP~ikvydlanLS-----LKFERhlDae~V~feiLsDD~SK~v~L----~~DR~IefHak  123 (703)
T KOG2321|consen   57 IKVSPDGQYLLATGT----YKPQIKVYDLANLS-----LKFERHLDAEVVDFEILSDDYSKSVFL----QNDRTIEFHAK  123 (703)
T ss_pred             eEecCCCcEEEEecc----cCCceEEEEcccce-----eeeeecccccceeEEEeccchhhheEe----ecCceeeehhh
Confidence            455666654443 33    34578888888743     2333344  344444445555555554    37777777653


Q ss_pred             CcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCC
Q 019059           99 PELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDP  178 (346)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  178 (346)
                      .           ..-..++. ...-..++++.-...+++++ ....|+-++++.+.-...+...     ...++.+..++
T Consensus       124 ~-----------G~hy~~RI-P~~GRDm~y~~~scDly~~g-sg~evYRlNLEqGrfL~P~~~~-----~~~lN~v~in~  185 (703)
T KOG2321|consen  124 Y-----------GRHYRTRI-PKFGRDMKYHKPSCDLYLVG-SGSEVYRLNLEQGRFLNPFETD-----SGELNVVSINE  185 (703)
T ss_pred             c-----------Ceeeeeec-CcCCccccccCCCccEEEee-cCcceEEEEccccccccccccc-----cccceeeeecC
Confidence            3           11111111 12234566654444444444 4678999999977654443332     23789999999


Q ss_pred             CCCcEEEEecCCeEEEEEccCCCccceeecc--------c-----eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcce
Q 019059          179 HDVNAVAATCESSVQFWDLRSMGKTNSIEHA--------H-----VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPI  245 (346)
Q Consensus       179 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--------~-----v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  245 (346)
                      ....|++|+.+|.|.+||.+....+..+..+        .     |+++.|+.+|- -+++|..+|.+.|||+|... |+
T Consensus       186 ~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL-~~aVGts~G~v~iyDLRa~~-pl  263 (703)
T KOG2321|consen  186 EHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGL-HVAVGTSTGSVLIYDLRASK-PL  263 (703)
T ss_pred             ccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCce-eEEeeccCCcEEEEEcccCC-ce
Confidence            9888999999999999999988766554311        1     99999998886 79999999999999999844 44


Q ss_pred             e-eecCCCcceEEEEeCCCCC-cEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeC
Q 019059          246 Q-ELPGHTHWTWAVCCNPEYD-GFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWS  323 (346)
Q Consensus       246 ~-~~~~~~~~v~~v~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  323 (346)
                      . .-.+..-+|..+.|.+.+. ..+++.. ...++|||-.+                   ++....+... ..+..+++-
T Consensus       264 ~~kdh~~e~pi~~l~~~~~~~q~~v~S~D-k~~~kiWd~~~-------------------Gk~~asiEpt-~~lND~C~~  322 (703)
T KOG2321|consen  264 LVKDHGYELPIKKLDWQDTDQQNKVVSMD-KRILKIWDECT-------------------GKPMASIEPT-SDLNDFCFV  322 (703)
T ss_pred             eecccCCccceeeecccccCCCceEEecc-hHHhhhccccc-------------------CCceeecccc-CCcCceeee
Confidence            3 2334456888999977642 4455443 46899999998                   7777666543 349999999


Q ss_pred             CCCCcEEEEeecCCeEEEe
Q 019059          324 SREPWIFASLSYDGRVRNH  342 (346)
Q Consensus       324 ~~~~~~l~s~~~d~~v~vw  342 (346)
                      |++. +++++-++..+..|
T Consensus       323 p~sG-m~f~Ane~~~m~~y  340 (703)
T KOG2321|consen  323 PGSG-MFFTANESSKMHTY  340 (703)
T ss_pred             cCCc-eEEEecCCCcceeE
Confidence            9887 88888877766544

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.51  E-value=9.6e-12  Score=104.58  Aligned_cols=223  Identities=17%  Similarity=0.230  Sum_probs=145.8

Q ss_pred             CCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEe---ecCCcceEEEEecCcccCCCCCccceeeeeee
Q 019059           41 ENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVF---STGESYGAAIWQIPELYGQLNSPQLERIAALD  117 (346)
Q Consensus        41 ~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~---~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~  117 (346)
                      .+.+++++........  ..  -|...|..+.+||....-..+.+   .+|.-..++||.+....      ..+++..-.
T Consensus       145 ~nev~f~~~~~f~~~~--~k--l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~------~~~~~a~ks  214 (566)
T KOG2315|consen  145 SNEVQFYDLGSFKTIQ--HK--LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEG------QHQPVANKS  214 (566)
T ss_pred             cceEEEEecCCcccee--ee--eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccc------ccchhhhcc
Confidence            4677777777643222  22  25678999999997443333333   35566789999987211      112222111


Q ss_pred             ccCCceEEEEeecCCCCcEEEEec--C---------CeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEE
Q 019059          118 AHVGKINCVLWWSSGRHDKLVSID--E---------ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAA  186 (346)
Q Consensus       118 ~~~~~i~~~~~~~~~~~~~~~~~~--d---------~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  186 (346)
                      -....-..+.|++-|+.+++..+.  |         ..+++.+++...  ..+ ....   ..+|.++.|+|+++.+++.
T Consensus       215 FFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s--~~V-~L~k---~GPVhdv~W~~s~~EF~Vv  288 (566)
T KOG2315|consen  215 FFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES--VSV-PLLK---EGPVHDVTWSPSGREFAVV  288 (566)
T ss_pred             ccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce--EEE-ecCC---CCCceEEEECCCCCEEEEE
Confidence            223344578899998877666532  2         356777766222  111 1122   2389999999999877665


Q ss_pred             e--cCCeEEEEEccCCCccceeeccceeEEEeCCCCCcEEEEec--CCCeEEEEEcccCCcceeeecCCCcceEEEEeCC
Q 019059          187 T--CESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAA--DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNP  262 (346)
Q Consensus       187 ~--~d~~i~i~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~  262 (346)
                      -  .-..+.|+|++ +.++..+..+.=+++-|+|.|+.++++|-  --|.|.+||+.+ .+.+..+...  .-+-+.|+|
T Consensus       289 yGfMPAkvtifnlr-~~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n-~K~i~~~~a~--~tt~~eW~P  364 (566)
T KOG2315|consen  289 YGFMPAKVTIFNLR-GKPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN-RKLIAKFKAA--NTTVFEWSP  364 (566)
T ss_pred             EecccceEEEEcCC-CCEeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccc-hhhccccccC--CceEEEEcC
Confidence            4  46789999988 55666666455788999999994444433  348999999998 5567766643  345578999


Q ss_pred             CCCcEEEEecC------CCeEEEEecCC
Q 019059          263 EYDGFILSAGT------DSTVNLWLVST  284 (346)
Q Consensus       263 ~~~~~l~s~~~------d~~i~iwd~~~  284 (346)
                      +| .+|+|++.      |+.++||+..-
T Consensus       365 dG-e~flTATTaPRlrvdNg~KiwhytG  391 (566)
T KOG2315|consen  365 DG-EYFLTATTAPRLRVDNGIKIWHYTG  391 (566)
T ss_pred             CC-cEEEEEeccccEEecCCeEEEEecC
Confidence            99 88888764      78899999874

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=3.8e-11  Score=104.50  Aligned_cols=243  Identities=9%  Similarity=0.027  Sum_probs=137.5

Q ss_pred             CeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEE--EEeecCCcceEEEEecCcccCCCCCccceeeeeeecc
Q 019059           42 NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFS--TVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH  119 (346)
Q Consensus        42 ~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~--~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~  119 (346)
                      ..+++.+.+..+.    ..+......+..-+|+|||+.++.  +.+.. ....|.+.++.         .++. ..+...
T Consensus       165 ~~l~~~d~dG~~~----~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~-g~~~I~~~~l~---------~g~~-~~lt~~  229 (428)
T PRK01029        165 GELWSVDYDGQNL----RPLTQEHSLSITPTWMHIGSGFPYLYVSYKL-GVPKIFLGSLE---------NPAG-KKILAL  229 (428)
T ss_pred             ceEEEEcCCCCCc----eEcccCCCCcccceEccCCCceEEEEEEccC-CCceEEEEECC---------CCCc-eEeecC
Confidence            3566665544332    223334556778899999987432  32222 22456666765         2221 223233


Q ss_pred             CCceEEEEeecCCCCcEEEEecCC--e--EEEEEcCCCC--CCceeeecccCCCceeeEEEEeCCCCCcEEEEec-CCe-
Q 019059          120 VGKINCVLWWSSGRHDKLVSIDEE--N--IFLWSLDCSN--KNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-ESS-  191 (346)
Q Consensus       120 ~~~i~~~~~~~~~~~~~~~~~~d~--~--i~vwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~-  191 (346)
                      .+.....+|+|||+++++++..+|  .  +..|++..+.  ....+...    ........+|+|||+.|+..+. ++. 
T Consensus       230 ~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~----~~~~~~~p~wSPDG~~Laf~s~~~g~~  305 (428)
T PRK01029        230 QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNE----AFGTQGNPSFSPDGTRLVFVSNKDGRP  305 (428)
T ss_pred             CCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecC----CCCCcCCeEECCCCCEEEEEECCCCCc
Confidence            445567899999998666653323  3  3446665431  12222211    1113356799999998887763 554 


Q ss_pred             -EEEEEccC-CCccceeeccc--eeEEEeCCCCCcEEEEecCC--CeEEEEEcccCCcceeeecCCCcceEEEEeCCCCC
Q 019059          192 -VQFWDLRS-MGKTNSIEHAH--VRNVDYDTKKKHLLVTAADE--SGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYD  265 (346)
Q Consensus       192 -i~i~d~~~-~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~  265 (346)
                       |+++++.. +.....+....  +....|+|+|+.++++...+  ..|.+||+.. + ....+......+....|+|+| 
T Consensus       306 ~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~-g-~~~~Lt~~~~~~~~p~wSpDG-  382 (428)
T PRK01029        306 RIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT-G-RDYQLTTSPENKESPSWAIDS-  382 (428)
T ss_pred             eEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC-C-CeEEccCCCCCccceEECCCC-
Confidence             44445542 22233333222  77899999999444444443  3689999876 3 234444334456788999999 


Q ss_pred             cEEE-EecC--CCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCC
Q 019059          266 GFIL-SAGT--DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSRE  326 (346)
Q Consensus       266 ~~l~-s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  326 (346)
                      +.|+ ++..  ...|.++|+..                   ++. ..+....+.+...+|+|..
T Consensus       383 ~~L~f~~~~~g~~~L~~vdl~~-------------------g~~-~~Lt~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        383 LHLVYSAGNSNESELYLISLIT-------------------KKT-RKIVIGSGEKRFPSWGAFP  426 (428)
T ss_pred             CEEEEEECCCCCceEEEEECCC-------------------CCE-EEeecCCCcccCceecCCC
Confidence            6555 4433  34688888876                   332 2222333446778888754

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.49  E-value=2.8e-12  Score=108.36  Aligned_cols=185  Identities=12%  Similarity=0.190  Sum_probs=145.0

Q ss_pred             EEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeC--------------------CCCCcEEEEecCCeEEEE
Q 019059          136 KLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWD--------------------PHDVNAVAATCESSVQFW  195 (346)
Q Consensus       136 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~--------------------~~~~~l~~~~~d~~i~i~  195 (346)
                      ++....||.+++|+..+++....+.+...  ......+..|.                    .+...++-|...|.|.+|
T Consensus         8 ~A~~~~~g~l~iw~t~~~~~~~e~~p~~~--~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~y   85 (541)
T KOG4547|consen    8 FALSTGDGRLRIWDTAKNQLQQEFAPIAS--LSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLY   85 (541)
T ss_pred             EeecCCCCeEEEEEccCceeeeeeccchh--ccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEE
Confidence            44446699999999998765554443221  11133333331                    122356677788999999


Q ss_pred             EccCCCccceeec-cc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEe
Q 019059          196 DLRSMGKTNSIEH-AH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSA  271 (346)
Q Consensus       196 d~~~~~~~~~~~~-~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~  271 (346)
                      +...++....+.. .|   |.++.++.+-. .|.+++.|+.+..|+... ...++.+...+..+.+++.+||+ ..++++
T Consensus        86 s~~~g~it~~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~-~~~~~~~~~~~~~~~sl~is~D~-~~l~~a  162 (541)
T KOG4547|consen   86 SVAGGEITAKLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKE-KVIIRIWKEQKPLVSSLCISPDG-KILLTA  162 (541)
T ss_pred             EecCCeEEEEEecCCCCCcceeeecccccC-ceEecCCceeEEEEeccc-ceeeeeeccCCCccceEEEcCCC-CEEEec
Confidence            9999998887773 33   99999988876 899999999999999987 66788888888899999999999 899988


Q ss_pred             cCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCC-----CCcEEEEeecCCeEEEeeecC
Q 019059          272 GTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSR-----EPWIFASLSYDGRVRNHMLEK  346 (346)
Q Consensus       272 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~l~s~~~d~~v~vw~~~~  346 (346)
                      +  ++|++||+++                   .+.+..|.+|.++|+++.|--+     |.++|.+...+.-+.+|-+++
T Consensus       163 s--~~ik~~~~~~-------------------kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  163 S--RQIKVLDIET-------------------KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             c--ceEEEEEccC-------------------ceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            7  5799999999                   8999999999999999999876     666777777788888887653

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.49  E-value=6.9e-13  Score=114.86  Aligned_cols=298  Identities=14%  Similarity=0.208  Sum_probs=192.7

Q ss_pred             EeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCe-EEEeeeeccccceEEeeecCCCC--ceEEEEeecCCcceEE
Q 019059           18 CISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTE-LICEGLFSHPNEIWDLSSCPFDQ--RIFSTVFSTGESYGAA   94 (346)
Q Consensus        18 ~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~~~~~d~~i~   94 (346)
                      ++.++..++.+.-++.+     ...-++++++.....+ .....  -.+-.|-++.|+|...  +-++.    -+...-.
T Consensus        26 ~~~a~si~p~grdi~lA-----sr~gl~i~dld~p~~ppr~l~h--~tpw~vad~qws~h~a~~~wiVs----ts~qkai   94 (1081)
T KOG0309|consen   26 GFNAVSINPSGRDIVLA-----SRQGLYIIDLDDPFTPPRWLHH--ITPWQVADVQWSPHPAKPYWIVS----TSNQKAI   94 (1081)
T ss_pred             cccceeeccccchhhhh-----hhcCeEEEeccCCCCCceeeec--cCcchhcceecccCCCCceeEEe----cCcchhh
Confidence            34444444444444433     2345677777664332 22211  1234677888987543  32332    2444567


Q ss_pred             EEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEE
Q 019059           95 IWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGG  174 (346)
Q Consensus        95 vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~  174 (346)
                      +|++...      .....-..+.+|...|+.+.|+|+.+.++++++-|..+..||+++.........    ........+
T Consensus        95 iwnlA~s------s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~----~w~s~asqV  164 (1081)
T KOG0309|consen   95 IWNLAKS------SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTS----SWRSAASQV  164 (1081)
T ss_pred             hhhhhcC------CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeee----cccccCcee
Confidence            8998731      122333456789999999999999998777778899999999997553322221    123356788


Q ss_pred             EeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCC
Q 019059          175 AWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGH  251 (346)
Q Consensus       175 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  251 (346)
                      +|+-....+++.+....|++||++.+........+|   ++.++|+..-...+.+.+.|++|+.||..+....-......
T Consensus       165 kwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt  244 (1081)
T KOG0309|consen  165 KWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTT  244 (1081)
T ss_pred             eecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccc
Confidence            999888888888888999999999886544433356   88888887655578899999999999988644333333345


Q ss_pred             CcceEEEEeCCCCCcEEEEe-cCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCC----
Q 019059          252 THWTWAVCCNPEYDGFILSA-GTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSRE----  326 (346)
Q Consensus       252 ~~~v~~v~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----  326 (346)
                      ..+|..-++-|-|+.+.+-- -.+..+.+++.+....+-.         ......+++++.||...|..+-|-..+    
T Consensus       245 ~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n---------~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~  315 (1081)
T KOG0309|consen  245 NFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWN---------VFDLNTPVHTFVGHDDVVLEFLWRKRKECDG  315 (1081)
T ss_pred             cCcceeccccccCceeEeccccCCeeeeeccccchhhhhc---------cccCCcceeeecCcchHHHHHhhhhcccccC
Confidence            67788888888774333221 1223555554443111100         001257899999999988777775321    


Q ss_pred             -----CcEEEEeecCCeEEEeeec
Q 019059          327 -----PWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       327 -----~~~l~s~~~d~~v~vw~~~  345 (346)
                           ...|++-+.|..+|+|-+.
T Consensus       316 d~d~rdfQLVTWSkD~~lrlWpI~  339 (1081)
T KOG0309|consen  316 DYDSRDFQLVTWSKDQTLRLWPID  339 (1081)
T ss_pred             CCCccceeEEEeecCCceEeeecc
Confidence                 2469999999999999875

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.48  E-value=2.6e-11  Score=102.05  Aligned_cols=235  Identities=11%  Similarity=0.154  Sum_probs=155.9

Q ss_pred             EEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEE------ecC
Q 019059           69 WDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS------IDE  142 (346)
Q Consensus        69 ~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------~~d  142 (346)
                      +++.|++|....+-.     ..+.+.+|++..        ......  +-|...|..+.++|......++.      |.-
T Consensus       129 W~~qfs~dEsl~arl-----v~nev~f~~~~~--------f~~~~~--kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaP  193 (566)
T KOG2315|consen  129 WVPQFSIDESLAARL-----VSNEVQFYDLGS--------FKTIQH--KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAP  193 (566)
T ss_pred             cccccccchhhhhhh-----hcceEEEEecCC--------ccceee--eeeccceeeEEecCCCCCceEEEEccCCCCCC
Confidence            578888876544332     345799999872        112222  24677899999999855445554      234


Q ss_pred             CeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEE-ec-----------CCeEEEEEccCCCccceeeccc
Q 019059          143 ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAA-TC-----------ESSVQFWDLRSMGKTNSIEHAH  210 (346)
Q Consensus       143 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~-----------d~~i~i~d~~~~~~~~~~~~~~  210 (346)
                      ..|+||..........+..+.+  ....-..+.|++-+.-|++- +.           ..+++++++....+...+....
T Consensus       194 a~vri~~~~~~~~~~~~a~ksF--Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~G  271 (566)
T KOG2315|consen  194 ASVRIYKYPEEGQHQPVANKSF--FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEG  271 (566)
T ss_pred             cEEEEeccccccccchhhhccc--cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCC
Confidence            6899998863332222221111  11234567888877654432 21           2479999988555555555333


Q ss_pred             -eeEEEeCCCCCcEEEE-ecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCC---CeEEEEecCCC
Q 019059          211 -VRNVDYDTKKKHLLVT-AADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTD---STVNLWLVSTS  285 (346)
Q Consensus       211 -v~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d---~~i~iwd~~~~  285 (346)
                       |.++.|+|++..+.++ |-.--.+.+||++  ..++..+  .+++-+++-|+|.| ++|+.++-+   |.|-|||+.. 
T Consensus       272 PVhdv~W~~s~~EF~VvyGfMPAkvtifnlr--~~~v~df--~egpRN~~~fnp~g-~ii~lAGFGNL~G~mEvwDv~n-  345 (566)
T KOG2315|consen  272 PVHDVTWSPSGREFAVVYGFMPAKVTIFNLR--GKPVFDF--PEGPRNTAFFNPHG-NIILLAGFGNLPGDMEVWDVPN-  345 (566)
T ss_pred             CceEEEECCCCCEEEEEEecccceEEEEcCC--CCEeEeC--CCCCccceEECCCC-CEEEEeecCCCCCceEEEeccc-
Confidence             9999999999743333 4445689999998  4466665  36778889999999 888887764   7899999998 


Q ss_pred             CCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeec-----CCeEEEeeecC
Q 019059          286 NHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSY-----DGRVRNHMLEK  346 (346)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-----d~~v~vw~~~~  346 (346)
                                        .+++..+.....  +-+.|+|||++++.+...     |+.++||+.+|
T Consensus       346 ------------------~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG  391 (566)
T KOG2315|consen  346 ------------------RKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG  391 (566)
T ss_pred             ------------------hhhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence                              788877766543  558999999844433333     78899999865

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.48  E-value=1.9e-12  Score=116.03  Aligned_cols=197  Identities=15%  Similarity=0.234  Sum_probs=146.8

Q ss_pred             CceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCC
Q 019059          121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSM  200 (346)
Q Consensus       121 ~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  200 (346)
                      +.|....+.-+... ++....++.+.+||........++...+. .......-+.++++.-++++++--+.|.+|+....
T Consensus        88 ~wi~g~~l~~e~k~-i~l~~~~ns~~i~d~~~~~~~~~i~~~er-~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~d  165 (967)
T KOG0974|consen   88 DWIFGAKLFEENKK-IALVTSRNSLLIRDSKNSSVLSKIQSDER-CTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHED  165 (967)
T ss_pred             ccccccchhhhcce-EEEEEcCceEEEEecccCceehhcCCCce-EEEEeEEEEeccCcEEEEEeccccccEEEEecccc
Confidence            34444555556664 44444578999999886544333332211 11112333455666677888888999999999843


Q ss_pred             Cccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeE
Q 019059          201 GKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTV  277 (346)
Q Consensus       201 ~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i  277 (346)
                      .....+ .+|   |-.+.|+.+|. ++++.++|.++++|++.+........-+|...|..+.|.|+   .+++++.|.+.
T Consensus       166 n~p~~l-~GHeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n---~i~t~gedctc  240 (967)
T KOG0974|consen  166 NKPIRL-KGHEGSIFSIVTSLDGR-YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN---RIITVGEDCTC  240 (967)
T ss_pred             CCccee-cccCCceEEEEEccCCc-EEEEEecCcceeeeecccccccCcccccccceeEEEEeccc---eeEEeccceEE
Confidence            333323 366   99999999998 99999999999999999855544466789999999999996   79999999999


Q ss_pred             EEEecCCCCCCCCCcccccCCccccccccccccccccc-eeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          278 NLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYED-SVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       278 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      ++|+.+                    +..+.++.+|.. .|+.++..++.. ++++++.|+.+++|++.
T Consensus       241 rvW~~~--------------------~~~l~~y~~h~g~~iw~~~~~~~~~-~~vT~g~Ds~lk~~~l~  288 (967)
T KOG0974|consen  241 RVWGVN--------------------GTQLEVYDEHSGKGIWKIAVPIGVI-IKVTGGNDSTLKLWDLN  288 (967)
T ss_pred             EEEecc--------------------cceehhhhhhhhcceeEEEEcCCce-EEEeeccCcchhhhhhh
Confidence            999776                    466668888864 599999999876 89999999999999864

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.46  E-value=5.8e-12  Score=99.77  Aligned_cols=254  Identities=12%  Similarity=0.138  Sum_probs=182.7

Q ss_pred             eEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeee-eccCCceEEEEeecCCC
Q 019059           55 ELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL-DAHVGKINCVLWWSSGR  133 (346)
Q Consensus        55 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~  133 (346)
                      +.....+.||.+.|++...-|..+-++++    +.|.+++||--.+        .++.-..+ ..-..+++++.+.++..
T Consensus        14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~----s~drtvrv~lkrd--------s~q~wpsI~~~mP~~~~~~~y~~e~~   81 (404)
T KOG1409|consen   14 PELLSKIEGSQDDVNAAILIPKEEGVISV----SEDRTVRVWLKRD--------SGQYWPSIYHYMPSPCSAMEYVSESR   81 (404)
T ss_pred             hhhhhhhcCchhhhhhheeccCCCCeEEc----cccceeeeEEecc--------ccccCchhhhhCCCCceEeeeeccce
Confidence            34456778999999999999988888886    6999999996542        22222222 12356788999998877


Q ss_pred             CcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc-ee
Q 019059          134 HDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VR  212 (346)
Q Consensus       134 ~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-v~  212 (346)
                      . ++++-..|++.-+.+...-.. .........|...+..+-|+.....+++.+.|..+.---.+.+..+....... ..
T Consensus        82 ~-L~vg~~ngtvtefs~sedfnk-m~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t  159 (404)
T KOG1409|consen   82 R-LYVGQDNGTVTEFALSEDFNK-MTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPAS  159 (404)
T ss_pred             E-EEEEEecceEEEEEhhhhhhh-cchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCC
Confidence            4 777777899998887643322 22233345677899999999888889999988877655555555443322111 22


Q ss_pred             EEEeCCCCCcEEEEecCCCeEEEEEcccC-CcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCC
Q 019059          213 NVDYDTKKKHLLVTAADESGIHLWDLRML-KAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELP  291 (346)
Q Consensus       213 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  291 (346)
                      ++.+.-.   ....|...|.|.+..+... -.++.++.+|...+.+++|.|.. .+|.+|..|..+.+||+-.       
T Consensus       160 ~~~~d~~---~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~-~~LfSg~~d~~vi~wdigg-------  228 (404)
T KOG1409|consen  160 ALQFDAL---YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQ-RLLFSGASDHSVIMWDIGG-------  228 (404)
T ss_pred             CCceeeE---EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCC-cEEEeccccCceEEEeccC-------
Confidence            2222211   3445666677666554431 24788899999999999999998 9999999999999999986       


Q ss_pred             cccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          292 SESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                                 .......+.+|...|..+..-+.-+ .+.+++.||.|.+|++.
T Consensus       229 -----------~~g~~~el~gh~~kV~~l~~~~~t~-~l~S~~edg~i~~w~mn  270 (404)
T KOG1409|consen  229 -----------RKGTAYELQGHNDKVQALSYAQHTR-QLISCGEDGGIVVWNMN  270 (404)
T ss_pred             -----------Ccceeeeeccchhhhhhhhhhhhhe-eeeeccCCCeEEEEecc
Confidence                       2344566788998899998888775 88999999999999974

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.45  E-value=2.9e-11  Score=104.81  Aligned_cols=274  Identities=11%  Similarity=0.143  Sum_probs=191.0

Q ss_pred             eccCCCCcceEEEeecccCCCCeEEEEEecCCCC------------eEEEeeeeccccceEEeeecCCCCceEEEEeecC
Q 019059           21 DVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGT------------ELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTG   88 (346)
Q Consensus        21 ~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~------------~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~   88 (346)
                      .+.++.+..-+++|    +.+|.+.++.+.....            .....++.+|.+.|.-+.|+.+.+.|-+    +.
T Consensus        19 c~~WNke~gyIAcg----G~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTt----SD   90 (1189)
T KOG2041|consen   19 CAEWNKESGYIACG----GADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTT----SD   90 (1189)
T ss_pred             EEEEcccCCeEEec----cccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccc----cC
Confidence            34455577777776    4678888888765421            2223568899999999999998888877    47


Q ss_pred             CcceEEEEecCcccCCCCCccceeee--eeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCC
Q 019059           89 ESYGAAIWQIPELYGQLNSPQLERIA--ALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG  166 (346)
Q Consensus        89 ~d~~i~vw~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~  166 (346)
                      .+|.|.||-+-         .+.-..  .-...++.|.+++|+.+|+. +.....||.|.+=.++.+..    ..+...+
T Consensus        91 t~GlIiVWmly---------kgsW~EEMiNnRnKSvV~SmsWn~dG~k-IcIvYeDGavIVGsvdGNRI----wgKeLkg  156 (1189)
T KOG2041|consen   91 TSGLIIVWMLY---------KGSWCEEMINNRNKSVVVSMSWNLDGTK-ICIVYEDGAVIVGSVDGNRI----WGKELKG  156 (1189)
T ss_pred             CCceEEEEeee---------cccHHHHHhhCcCccEEEEEEEcCCCcE-EEEEEccCCEEEEeecccee----cchhcch
Confidence            89999999987         232222  22345678999999999996 66667899999888875432    2222222


Q ss_pred             CceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCC-------ccceee-----ccc-eeEEEeC--------CCCCcEEE
Q 019059          167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG-------KTNSIE-----HAH-VRNVDYD--------TKKKHLLV  225 (346)
Q Consensus       167 ~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-------~~~~~~-----~~~-v~~~~~~--------~~~~~~l~  225 (346)
                      .  ....+.|++|.+.++.+-..|.+++||....-       +.....     .++ +..+.|.        |+.+ .++
T Consensus       157 ~--~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP-~la  233 (1189)
T KOG2041|consen  157 Q--LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRP-RLA  233 (1189)
T ss_pred             h--eccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCC-EEE
Confidence            1  45688999999998888889999999977432       111111     122 6666664        5777 899


Q ss_pred             EecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCC---------eEEEEecCCCCCCCCCccccc
Q 019059          226 TAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDS---------TVNLWLVSTSNHDELPSESLV  296 (346)
Q Consensus       226 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~---------~i~iwd~~~~~~~~~~~~~~~  296 (346)
                      ++-.+|.+.+..-.+...|+..-  ..-.+....|+++| ..||.++.|.         .|.+|..-             
T Consensus       234 vcy~nGr~QiMR~eND~~Pvv~d--tgm~~vgakWnh~G-~vLAvcG~~~da~~~~d~n~v~Fysp~-------------  297 (1189)
T KOG2041|consen  234 VCYANGRMQIMRSENDPEPVVVD--TGMKIVGAKWNHNG-AVLAVCGNDSDADEPTDSNKVHFYSPY-------------  297 (1189)
T ss_pred             EEEcCceehhhhhcCCCCCeEEe--cccEeecceecCCC-cEEEEccCcccccCccccceEEEeccc-------------
Confidence            99999999887665544444332  34678889999999 9999988642         45555443             


Q ss_pred             CCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059          297 ESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~  344 (346)
                             ++.+.+++.....|++++|-..|-  =++-..|+.|++-++
T Consensus       298 -------G~i~gtlkvpg~~It~lsWEg~gL--riA~AvdsfiyfanI  336 (1189)
T KOG2041|consen  298 -------GHIVGTLKVPGSCITGLSWEGTGL--RIAIAVDSFIYFANI  336 (1189)
T ss_pred             -------hhheEEEecCCceeeeeEEcCCce--EEEEEecceEEEEee
Confidence                   677788887788899999987663  334455777776554

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.43  E-value=2.7e-12  Score=121.03  Aligned_cols=186  Identities=12%  Similarity=0.230  Sum_probs=140.4

Q ss_pred             cccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeee-ccCCceEEEEeecCCCCcEEEEecC
Q 019059           64 HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD-AHVGKINCVLWWSSGRHDKLVSIDE  142 (346)
Q Consensus        64 h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~d  142 (346)
                      +-..|.++.-+|...+.++    |+.||.+++|...         ..+.+..++ .....|+.+.|+.+|.. +-++-.|
T Consensus      2207 ~v~~v~r~~sHp~~~~Ylt----gs~dgsv~~~~w~---------~~~~v~~~rt~g~s~vtr~~f~~qGnk-~~i~d~d 2272 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLT----GSQDGSVRMFEWG---------HGQQVVCFRTAGNSRVTRSRFNHQGNK-FGIVDGD 2272 (2439)
T ss_pred             ccCceeeecCCCCCceEEe----cCCCceEEEEecc---------CCCeEEEeeccCcchhhhhhhcccCCc-eeeeccC
Confidence            4477888888998888888    5899999999987         445555443 23488999999999986 5555569


Q ss_pred             CeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEe---cCCeEEEEEccCCCccceeeccc---eeEEEe
Q 019059          143 ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT---CESSVQFWDLRSMGKTNSIEHAH---VRNVDY  216 (346)
Q Consensus       143 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~  216 (346)
                      |.+.+|.+.    +..+.  ....|......+.|-.  ..+++++   .++.+.+||..-......+...|   ++++++
T Consensus      2273 g~l~l~q~~----pk~~~--s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~ 2344 (2439)
T KOG1064|consen 2273 GDLSLWQAS----PKPYT--SWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAY 2344 (2439)
T ss_pred             CceeecccC----Cccee--ccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEE
Confidence            999999987    11221  1234666777888864  5566665   36899999986544333333455   999999


Q ss_pred             CCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          217 DTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       217 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      .|... +|++|+.+|.|++||++. ++.++.++.         +. .. .+|++|+..|.++||++..
T Consensus      2345 ~P~~q-llisggr~G~v~l~D~rq-rql~h~~~~---------~~-~~-~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2345 APKHQ-LLISGGRKGEVCLFDIRQ-RQLRHTFQA---------LD-TR-EYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred             cCcce-EEEecCCcCcEEEeehHH-HHHHHHhhh---------hh-hh-heeeccCcccceEEEEccc
Confidence            99998 999999999999999997 556666553         44 33 7999999999999999997

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.42  E-value=1.1e-10  Score=98.96  Aligned_cols=181  Identities=12%  Similarity=0.144  Sum_probs=136.7

Q ss_pred             CCcceEEEEecCcccCCCCCccceeeeeee---ccCCceEEEEee------c-------------CCCCcEEEEecCCeE
Q 019059           88 GESYGAAIWQIPELYGQLNSPQLERIAALD---AHVGKINCVLWW------S-------------SGRHDKLVSIDEENI  145 (346)
Q Consensus        88 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~------~-------------~~~~~~~~~~~d~~i  145 (346)
                      ..||.+++|+...         .+....+.   .-.+...+..|.      |             .++..++.|...|.|
T Consensus        12 ~~~g~l~iw~t~~---------~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen   12 TGDGRLRIWDTAK---------NQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             CCCCeEEEEEccC---------ceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            6899999999873         22222221   113334444442      1             233335555668999


Q ss_pred             EEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc--eeEEEeCCCCCcE
Q 019059          146 FLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKHL  223 (346)
Q Consensus       146 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--v~~~~~~~~~~~~  223 (346)
                      .+|+...++...++....   |...|.++.++.+-..+.+++.|+.+..|+....+....+....  +.+++.+||+. .
T Consensus        83 ~~ys~~~g~it~~~st~~---h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~-~  158 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDK---HYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK-I  158 (541)
T ss_pred             EEEEecCCeEEEEEecCC---CCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC-E
Confidence            999999877665555443   56689999999999999999999999999999988887777555  99999999998 8


Q ss_pred             EEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCC-----CCcEEEEecCCCeEEEEecCC
Q 019059          224 LVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPE-----YDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       224 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-----~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      +++++.  .|++||+.+ ++.+..|.+|.++|+++.|.-.     |..+|.+...+.-+.+|-+..
T Consensus       159 l~~as~--~ik~~~~~~-kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  159 LLTASR--QIKVLDIET-KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             EEeccc--eEEEEEccC-ceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            888765  899999998 7789999999999999999877     535556666667788887765

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.41  E-value=3e-10  Score=108.79  Aligned_cols=255  Identities=10%  Similarity=0.117  Sum_probs=152.9

Q ss_pred             EEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeec--------------cCCceEEEEeecCCCC
Q 019059           69 WDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA--------------HVGKINCVLWWSSGRH  134 (346)
Q Consensus        69 ~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~--------------~~~~i~~~~~~~~~~~  134 (346)
                      ..+++++.+..++.+   ....+.|+++|...          ..+..+..              +-.....+++.+++..
T Consensus       571 ~gvavd~~~g~lyVa---Ds~n~rI~v~d~~G----------~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~  637 (1057)
T PLN02919        571 GKLAIDLLNNRLFIS---DSNHNRIVVTDLDG----------NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNL  637 (1057)
T ss_pred             ceEEEECCCCeEEEE---ECCCCeEEEEeCCC----------CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCE
Confidence            357787766656655   35667899999762          22222211              1123578899998875


Q ss_pred             cEEEEecCCeEEEEEcCCCCCCceeeeccc-----C-------CCceeeEEEEeCCCCCcE-EEEecCCeEEEEEccCCC
Q 019059          135 DKLVSIDEENIFLWSLDCSNKNAQVQSKQS-----S-------GMLHYLSGGAWDPHDVNA-VAATCESSVQFWDLRSMG  201 (346)
Q Consensus       135 ~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~-----~-------~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~  201 (346)
                      ++++-...+.|+++|+.++. ...+.....     .       ........++++|++..+ ++...++.|++||..++.
T Consensus       638 LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~  716 (1057)
T PLN02919        638 LYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV  716 (1057)
T ss_pred             EEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe
Confidence            45555667889999986542 111111000     0       001234678999955444 455568899999987654


Q ss_pred             cccee--------e--------ccceeEEEeCCCCCcEEEEecCCCeEEEEEcccCCccee------------eecCC--
Q 019059          202 KTNSI--------E--------HAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQ------------ELPGH--  251 (346)
Q Consensus       202 ~~~~~--------~--------~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~------------~~~~~--  251 (346)
                      .....        .        ......|+++|++..++++-..++.|++||+.+....+.            .+...  
T Consensus       717 v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG  796 (1057)
T PLN02919        717 TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDG  796 (1057)
T ss_pred             EEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCC
Confidence            32100        0        001678999999986777777889999999875331110            00000  


Q ss_pred             ------CcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCC
Q 019059          252 ------THWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSR  325 (346)
Q Consensus       252 ------~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  325 (346)
                            -.....++++++| .++++-+.++.|++||..+..............   ..+.   ...+.-.....++++++
T Consensus       797 ~g~~~~l~~P~Gvavd~dG-~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~---~dG~---~~~a~l~~P~GIavd~d  869 (1057)
T PLN02919        797 VGSEVLLQHPLGVLCAKDG-QIYVADSYNHKIKKLDPATKRVTTLAGTGKAGF---KDGK---ALKAQLSEPAGLALGEN  869 (1057)
T ss_pred             chhhhhccCCceeeEeCCC-cEEEEECCCCEEEEEECCCCeEEEEeccCCcCC---CCCc---ccccccCCceEEEEeCC
Confidence                  1124688999999 888888889999999997621100000000000   0000   01112234688999999


Q ss_pred             CCcEEEEeecCCeEEEeeec
Q 019059          326 EPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       326 ~~~~l~s~~~d~~v~vw~~~  345 (346)
                      |+ ++++-+.+++|++|+++
T Consensus       870 G~-lyVaDt~Nn~Irvid~~  888 (1057)
T PLN02919        870 GR-LFVADTNNSLIRYLDLN  888 (1057)
T ss_pred             CC-EEEEECCCCEEEEEECC
Confidence            97 88888999999999985

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.37  E-value=1e-09  Score=95.04  Aligned_cols=197  Identities=12%  Similarity=0.078  Sum_probs=119.8

Q ss_pred             cceEEeeecCCCCc-eEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEec--C
Q 019059           66 NEIWDLSSCPFDQR-IFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSID--E  142 (346)
Q Consensus        66 ~~v~~~~~~~~~~~-l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--d  142 (346)
                      +.+....|+|+++. ++.+.+. +....|.++|+.         .++.. .+....+......|+|||+.++++...  +
T Consensus       188 ~~~~~p~wSpDG~~~i~y~s~~-~~~~~Iyv~dl~---------tg~~~-~lt~~~g~~~~~~~SPDG~~la~~~~~~g~  256 (419)
T PRK04043        188 GLNIFPKWANKEQTAFYYTSYG-ERKPTLYKYNLY---------TGKKE-KIASSQGMLVVSDVSKDGSKLLLTMAPKGQ  256 (419)
T ss_pred             CCeEeEEECCCCCcEEEEEEcc-CCCCEEEEEECC---------CCcEE-EEecCCCcEEeeEECCCCCEEEEEEccCCC
Confidence            36778999999986 4444322 234578888886         33332 232345556678899999986666643  4


Q ss_pred             CeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecC---CeEEEEEccCCCccceeeccceeEEEeCCC
Q 019059          143 ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE---SSVQFWDLRSMGKTNSIEHAHVRNVDYDTK  219 (346)
Q Consensus       143 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~v~~~~~~~~  219 (346)
                      ..|.++|+.++. ...+.. . .+   ......|+|||+.++..+..   ..|++.|+.+++..+....+. ....|+|+
T Consensus       257 ~~Iy~~dl~~g~-~~~LT~-~-~~---~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~-~~~~~SPD  329 (419)
T PRK04043        257 PDIYLYDTNTKT-LTQITN-Y-PG---IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK-NNSSVSTY  329 (419)
T ss_pred             cEEEEEECCCCc-EEEccc-C-CC---ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC-cCceECCC
Confidence            578888877654 222211 1 11   22345799999988887742   268888998776533322222 23589999


Q ss_pred             CCcEEEEecCC--------CeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecC-CC--eEEEEecCC
Q 019059          220 KKHLLVTAADE--------SGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGT-DS--TVNLWLVST  284 (346)
Q Consensus       220 ~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~-d~--~i~iwd~~~  284 (346)
                      |+.++++....        ..|.+.|+.. + ..+.+... .......|+|+| +.|+..+. .+  .+.+.++..
T Consensus       330 G~~Ia~~~~~~~~~~~~~~~~I~v~d~~~-g-~~~~LT~~-~~~~~p~~SPDG-~~I~f~~~~~~~~~L~~~~l~g  401 (419)
T PRK04043        330 KNYIVYSSRETNNEFGKNTFNLYLISTNS-D-YIRRLTAN-GVNQFPRFSSDG-GSIMFIKYLGNQSALGIIRLNY  401 (419)
T ss_pred             CCEEEEEEcCCCcccCCCCcEEEEEECCC-C-CeEECCCC-CCcCCeEECCCC-CEEEEEEccCCcEEEEEEecCC
Confidence            99655555443        3677888765 3 24445433 233458899999 65554443 33  355555553

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.35  E-value=7.1e-11  Score=92.64  Aligned_cols=250  Identities=15%  Similarity=0.243  Sum_probs=163.8

Q ss_pred             cccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccC------------CceEEEEeecC
Q 019059           64 HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV------------GKINCVLWWSS  131 (346)
Q Consensus        64 h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~------------~~i~~~~~~~~  131 (346)
                      ..+.|+++.|...|.++++    |...|.|.++.-+...+    -..+....+++|.            ..|..+.|..+
T Consensus        25 ead~ItaVefd~tg~Ylat----GDkgGRVvlfer~~s~~----ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~   96 (460)
T COG5170          25 EADKITAVEFDETGLYLAT----GDKGGRVVLFEREKSYG----CEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDD   96 (460)
T ss_pred             ccceeeEEEeccccceEee----cCCCceEEEeecccccc----cchhhhhhhcccccchhhhhhccHHHHhhheeeecC
Confidence            3467899999988888877    46778999988653211    0112222233332            45788888754


Q ss_pred             -CCCcEEEEecCCeEEEEEcCCCCC----------------------Cce-----------eee-----cccCCCceeeE
Q 019059          132 -GRHDKLVSIDEENIFLWSLDCSNK----------------------NAQ-----------VQS-----KQSSGMLHYLS  172 (346)
Q Consensus       132 -~~~~~~~~~~d~~i~vwd~~~~~~----------------------~~~-----------~~~-----~~~~~~~~~v~  172 (346)
                       ++..++.++.|.+|++|.+.....                      ..+           +..     .....|..-+.
T Consensus        97 t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiN  176 (460)
T COG5170          97 TGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHIN  176 (460)
T ss_pred             CCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEee
Confidence             444577778899999999865410                      000           000     01245666788


Q ss_pred             EEEeCCCCCcEEEEecCCeEEEEEccCCCccc---eeeccc-------eeEEEeCCCCCcEEEEecCCCeEEEEEcccCC
Q 019059          173 GGAWDPHDVNAVAATCESSVQFWDLRSMGKTN---SIEHAH-------VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK  242 (346)
Q Consensus       173 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~---~~~~~~-------v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  242 (346)
                      ++.|+.|.+.++++ .|-.|.+|.+.-.....   .+++..       |++..|+|...+++.-.+..|.|++-|+|+..
T Consensus       177 SiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~a  255 (460)
T COG5170         177 SISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSA  255 (460)
T ss_pred             eeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhh
Confidence            99999887766654 57789999987544222   222111       99999999988788888889999999999532


Q ss_pred             cce---e------------eecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccc
Q 019059          243 API---Q------------ELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLL  307 (346)
Q Consensus       243 ~~~---~------------~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (346)
                      .+.   .            -+.+-...|..+.|+++| +++++-+. -+|+|||++.                  ...++
T Consensus       256 lcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ng-ryIlsRdy-ltvkiwDvnm------------------~k~pi  315 (460)
T COG5170         256 LCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNG-RYILSRDY-LTVKIWDVNM------------------AKNPI  315 (460)
T ss_pred             hccCchhhhhhccCcccchhHHHHhhhhcceEEcCCC-cEEEEecc-ceEEEEeccc------------------ccCCc
Confidence            111   1            112233567889999999 88887665 4899999998                  24555


Q ss_pred             ccccccc------------cee---eEEEeCCCCCcEEEEeecCCeEEEee
Q 019059          308 NSYSDYE------------DSV---YGLAWSSREPWIFASLSYDGRVRNHM  343 (346)
Q Consensus       308 ~~~~~~~------------~~v---~~~~~~~~~~~~l~s~~~d~~v~vw~  343 (346)
                      ++..-|.            ..|   ..+.|+.+.+ .+.+|+.....-+|-
T Consensus       316 kTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~-~v~sgsy~NNfgiyp  365 (460)
T COG5170         316 KTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDK-HVLSGSYSNNFGIYP  365 (460)
T ss_pred             eeechHHHHHHHHHhhhhccceeeeEEEEecCCcc-cccccccccceeeec
Confidence            5554332            122   3467888776 677888777766664

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.35  E-value=4e-09  Score=87.80  Aligned_cols=271  Identities=9%  Similarity=-0.047  Sum_probs=155.2

Q ss_pred             CcceEEEeeccc-CCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecC---------CcceEEEE
Q 019059           27 DHTSFLTGTLSL-KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTG---------ESYGAAIW   96 (346)
Q Consensus        27 ~~~~~~~g~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~---------~d~~i~vw   96 (346)
                      +.+++.+..... .-.+.+.+++....+  +.-..-.+.  .-..+ ++|+++.+.++.   .         .+..|.+|
T Consensus        11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~--v~g~i~~G~--~P~~~-~spDg~~lyva~---~~~~R~~~G~~~d~V~v~   82 (352)
T TIGR02658        11 DARRVYVLDPGHFAATTQVYTIDGEAGR--VLGMTDGGF--LPNPV-VASDGSFFAHAS---TVYSRIARGKRTDYVEVI   82 (352)
T ss_pred             CCCEEEEECCcccccCceEEEEECCCCE--EEEEEEccC--CCcee-ECCCCCEEEEEe---ccccccccCCCCCEEEEE
Confidence            344555543321 113788898877642  221111122  12234 999999998885   4         57799999


Q ss_pred             ecCcccCCCCCccceeeeeeeccCC-------ceEEEEeecCCCCcEEEEec-CCeEEEEEcCCCCCCceeeecccCCCc
Q 019059           97 QIPELYGQLNSPQLERIAALDAHVG-------KINCVLWWSSGRHDKLVSID-EENIFLWSLDCSNKNAQVQSKQSSGML  168 (346)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~i~~~~~~~~~~~~~~~~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~  168 (346)
                      |..         +.+.+..+.....       ....++++|||++++++--. +..|.+.|+.+++...++....     
T Consensus        83 D~~---------t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-----  148 (352)
T TIGR02658        83 DPQ---------THLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-----  148 (352)
T ss_pred             ECc---------cCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-----
Confidence            998         6777777753222       23478899999975555533 8999999999776444443311     


Q ss_pred             eeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccc--e--e-eccc---eeEEEeCC-CCCcEEEEecCCCeEEEEEcc
Q 019059          169 HYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN--S--I-EHAH---VRNVDYDT-KKKHLLVTAADESGIHLWDLR  239 (346)
Q Consensus       169 ~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--~--~-~~~~---v~~~~~~~-~~~~~l~~~~~dg~i~i~d~~  239 (346)
                       ...-...++ ...+ +-+.||......+.+.....  .  + ....   ...-.|.+ ++. .+.+..+ |.|.+.|+.
T Consensus       149 -~~~vy~t~e-~~~~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~-~~~vs~e-G~V~~id~~  223 (352)
T TIGR02658       149 -CYHIFPTAN-DTFF-MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGR-LVWPTYT-GKIFQIDLS  223 (352)
T ss_pred             -CcEEEEecC-CccE-EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCc-EEEEecC-CeEEEEecC
Confidence             111111111 1111 22234443333222111111  0  0 0000   01113455 776 5555555 999999964


Q ss_pred             cC----CcceeeecC-------CCcceEEEEeCCCCCcEEEEec----------CCCeEEEEecCCCCCCCCCcccccCC
Q 019059          240 ML----KAPIQELPG-------HTHWTWAVCCNPEYDGFILSAG----------TDSTVNLWLVSTSNHDELPSESLVES  298 (346)
Q Consensus       240 ~~----~~~~~~~~~-------~~~~v~~v~~~~~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~  298 (346)
                      ..    ..++..+..       ......-++++|++ ..++...          ..+.|.++|..+              
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg-~~lyV~~~~~~~~thk~~~~~V~ViD~~t--------------  288 (352)
T TIGR02658       224 SGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRAR-DRIYLLADQRAKWTHKTASRFLFVVDAKT--------------  288 (352)
T ss_pred             CCcceecceeeeccccccccccCCCcceeEEEcCCC-CEEEEEecCCccccccCCCCEEEEEECCC--------------
Confidence            32    222222211       22344459999999 5565532          125799999998              


Q ss_pred             ccccccccccccccccceeeEEEeCCCCC-cEEEEeecCCeEEEeeec
Q 019059          299 PNQRANSLLNSYSDYEDSVYGLAWSSREP-WIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~s~~~d~~v~vw~~~  345 (346)
                           .+.+..+.- ...+..++++|+++ .++++...++.|.+.|+.
T Consensus       289 -----~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~  330 (352)
T TIGR02658       289 -----GKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAE  330 (352)
T ss_pred             -----CeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECc
Confidence                 777776653 23589999999998 666666678999999975

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.35  E-value=7.6e-12  Score=108.56  Aligned_cols=213  Identities=19%  Similarity=0.278  Sum_probs=156.6

Q ss_pred             cceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCC--CcEEEE
Q 019059          109 QLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD--VNAVAA  186 (346)
Q Consensus       109 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~  186 (346)
                      +......++ -.+.+.++..+|.|+.+++|+.  --+.+.|+...............   -.+-.+.|+|..  .+-++.
T Consensus        14 tf~kslsl~-v~~~~~a~si~p~grdi~lAsr--~gl~i~dld~p~~ppr~l~h~tp---w~vad~qws~h~a~~~wiVs   87 (1081)
T KOG0309|consen   14 TFGKSLSLK-VDGGFNAVSINPSGRDIVLASR--QGLYIIDLDDPFTPPRWLHHITP---WQVADVQWSPHPAKPYWIVS   87 (1081)
T ss_pred             ccCceeEEE-ecCcccceeeccccchhhhhhh--cCeEEEeccCCCCCceeeeccCc---chhcceecccCCCCceeEEe
Confidence            433333443 2567889999999998666654  34666787765544444332211   156777888754  334444


Q ss_pred             ecCCeEEEEEccCC--Cccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeC
Q 019059          187 TCESSVQFWDLRSM--GKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCN  261 (346)
Q Consensus       187 ~~d~~i~i~d~~~~--~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~  261 (346)
                      .....-.+|++...  ..+..+..+|   ++.+.|+|+.+.++++++.|-.++.||+++...++..+..-......|+|+
T Consensus        88 ts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwn  167 (1081)
T KOG0309|consen   88 TSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWN  167 (1081)
T ss_pred             cCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeec
Confidence            45556668988743  3444455566   999999999998999999999999999999888888887777778899999


Q ss_pred             CCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEE
Q 019059          262 PEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRN  341 (346)
Q Consensus       262 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~v  341 (346)
                      ...+..+|+ +..+.|++||.+.                  ...++..+++|...|..++|...-...+.+.+.|++|+.
T Consensus       168 yk~p~vlas-shg~~i~vwd~r~------------------gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkf  228 (1081)
T KOG0309|consen  168 YKDPNVLAS-SHGNDIFVWDLRK------------------GSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKF  228 (1081)
T ss_pred             ccCcchhhh-ccCCceEEEeccC------------------CCcceEEecccceeeehHHHhhhhhhhhcccCCCCceee
Confidence            887455554 5556799999998                  367888999999999999998754446889999999999


Q ss_pred             eeecC
Q 019059          342 HMLEK  346 (346)
Q Consensus       342 w~~~~  346 (346)
                      |+.+|
T Consensus       229 w~y~k  233 (1081)
T KOG0309|consen  229 WDYSK  233 (1081)
T ss_pred             ecccc
Confidence            99764

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.34  E-value=1.5e-09  Score=93.98  Aligned_cols=191  Identities=12%  Similarity=0.101  Sum_probs=113.4

Q ss_pred             ceEEEEeecCCCC-cEEEEe--cCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec---CCeEEEE
Q 019059          122 KINCVLWWSSGRH-DKLVSI--DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC---ESSVQFW  195 (346)
Q Consensus       122 ~i~~~~~~~~~~~-~~~~~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~i~  195 (346)
                      .+....|+|||+. +++++.  .+..|.++|+.+++.. .+..  ..+   ......|+|||+.++....   +..|.++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~-~lt~--~~g---~~~~~~~SPDG~~la~~~~~~g~~~Iy~~  262 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE-KIAS--SQG---MLVVSDVSKDGSKLLLTMAPKGQPDIYLY  262 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE-EEec--CCC---cEEeeEECCCCCEEEEEEccCCCcEEEEE
Confidence            7788999999986 444442  2467999999776532 2221  112   3456789999988776543   4578888


Q ss_pred             EccCCCccceeeccc--eeEEEeCCCCCcEEEEecCCC--eEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEe
Q 019059          196 DLRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAADES--GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSA  271 (346)
Q Consensus       196 d~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~  271 (346)
                      |+.+++.. .+....  .....|+|||+.++++....+  .|.+.|+.. +. .+.+.....  ....|+|+| ..|+..
T Consensus       263 dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~-g~-~~rlt~~g~--~~~~~SPDG-~~Ia~~  336 (419)
T PRK04043        263 DTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS-GS-VEQVVFHGK--NNSSVSTYK-NYIVYS  336 (419)
T ss_pred             ECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCC-CC-eEeCccCCC--cCceECCCC-CEEEEE
Confidence            98877643 333222  456689999986666655544  567777764 32 222221111  124899999 655544


Q ss_pred             cCC---------CeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCe--EE
Q 019059          272 GTD---------STVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGR--VR  340 (346)
Q Consensus       272 ~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~--v~  340 (346)
                      +..         ..|.+.|+..                   +.. ..+.... ......|+|||+.++.+....+.  +.
T Consensus       337 ~~~~~~~~~~~~~~I~v~d~~~-------------------g~~-~~LT~~~-~~~~p~~SPDG~~I~f~~~~~~~~~L~  395 (419)
T PRK04043        337 SRETNNEFGKNTFNLYLISTNS-------------------DYI-RRLTANG-VNQFPRFSSDGGSIMFIKYLGNQSALG  395 (419)
T ss_pred             EcCCCcccCCCCcEEEEEECCC-------------------CCe-EECCCCC-CcCCeEECCCCCEEEEEEccCCcEEEE
Confidence            432         2677778776                   222 2222221 23358899999855444433333  44


Q ss_pred             Eeeec
Q 019059          341 NHMLE  345 (346)
Q Consensus       341 vw~~~  345 (346)
                      +.+++
T Consensus       396 ~~~l~  400 (419)
T PRK04043        396 IIRLN  400 (419)
T ss_pred             EEecC
Confidence            55544

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.34  E-value=1.2e-10  Score=104.76  Aligned_cols=151  Identities=14%  Similarity=0.229  Sum_probs=119.9

Q ss_pred             eeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc------eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCc
Q 019059          170 YLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH------VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA  243 (346)
Q Consensus       170 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~------v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  243 (346)
                      .+....+..+...++.++.++.+.+||...+.....+....      ..-+.++++.- .+++|+.-+.|.+|+....+.
T Consensus        89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~-~i~~gsv~~~iivW~~~~dn~  167 (967)
T KOG0974|consen   89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEEL-YIASGSVFGEIIVWKPHEDNK  167 (967)
T ss_pred             cccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEE-EEEeccccccEEEEeccccCC
Confidence            34444455567788888999999999999877666655333      22233455443 788899999999999885444


Q ss_pred             ceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccc-ccccccceeeEEEe
Q 019059          244 PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLN-SYSDYEDSVYGLAW  322 (346)
Q Consensus       244 ~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~  322 (346)
                      ++ .+.+|.+.|..+.|+-+| .++++.|+|.++|+|++.+                   .+... ..-+|+..|+.+.|
T Consensus       168 p~-~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s-------------------~~~~~~~~fgHsaRvw~~~~  226 (967)
T KOG0974|consen  168 PI-RLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDS-------------------REVLGCTGFGHSARVWACCF  226 (967)
T ss_pred             cc-eecccCCceEEEEEccCC-cEEEEEecCcceeeeeccc-------------------ccccCcccccccceeEEEEe
Confidence            44 688999999999999999 9999999999999999998                   44443 66789999999999


Q ss_pred             CCCCCcEEEEeecCCeEEEeeec
Q 019059          323 SSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       323 ~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      +|+   .++++++|.+.++|+.+
T Consensus       227 ~~n---~i~t~gedctcrvW~~~  246 (967)
T KOG0974|consen  227 LPN---RIITVGEDCTCRVWGVN  246 (967)
T ss_pred             ccc---eeEEeccceEEEEEecc
Confidence            997   58999999999999654

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.33  E-value=3.8e-11  Score=91.71  Aligned_cols=221  Identities=12%  Similarity=0.105  Sum_probs=132.7

Q ss_pred             eeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEe-----
Q 019059          113 IAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT-----  187 (346)
Q Consensus       113 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----  187 (346)
                      ...+..|.++-.+-+.+--++. +++++.||.+.+++.+..........   ..|. ...+.+....++.+.++.     
T Consensus        82 ~~~~a~~sep~p~~~~s~~~t~-V~~~~~dg~~~v~s~~~~~~~~~~i~---~~~~-~~as~~~~~~~~~i~s~~~g~~n  156 (319)
T KOG4714|consen   82 FKVLAKNSEIDPNDACTMTDNR-VCIGYADGSLAVFSTDKDLALMSRIP---SIHS-GSASRKICRHGNSILSGGCGNWN  156 (319)
T ss_pred             eeeeeccCCCCCcccccccCCc-eEecCCCceEEEEechHHHhhhhhcc---cccc-cccccceeecccEEecCCcceEe
Confidence            3344445443333333323333 67777899999999875221111111   1111 111222222344343332     


Q ss_pred             cCCeEEEEEccCCCccceeec-cc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCC
Q 019059          188 CESSVQFWDLRSMGKTNSIEH-AH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYD  265 (346)
Q Consensus       188 ~d~~i~i~d~~~~~~~~~~~~-~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~  265 (346)
                      .-+..+.|+++..+....-.. .. |.+++-+|...+++++|+.||.+.+||.|+...|...+..|+.+++.+-|+|..+
T Consensus       157 ~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p  236 (319)
T KOG4714|consen  157 AQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNP  236 (319)
T ss_pred             eccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCc
Confidence            134566777765443322221 12 9999999998889999999999999999998778888999999999999999998


Q ss_pred             cEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccc-------ccccccceeeEEEeCCCCCcEEEEeecCCe
Q 019059          266 GFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLN-------SYSDYEDSVYGLAWSSREPWIFASLSYDGR  338 (346)
Q Consensus       266 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~  338 (346)
                      ..|+++++||.+--||..+.... ..... .....-..+.++.       .+......|.++...  |+ .|++|+.-+.
T Consensus       237 ~~Lft~sedGslw~wdas~~~l~-i~~~~-s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~--g~-~lVcgtd~ea  311 (319)
T KOG4714|consen  237 EHLFTCSEDGSLWHWDASTTFLS-ISNQA-SVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVL--GP-CLVCGTDAEA  311 (319)
T ss_pred             hheeEecCCCcEEEEcCCCceEE-ecCcc-ccccccccCCcccceEeeeccccccceeeeeeecc--Cc-eEEeccccce
Confidence            99999999999999999852100 00000 0000001111111       122233446666654  55 7888988888


Q ss_pred             EEEee
Q 019059          339 VRNHM  343 (346)
Q Consensus       339 v~vw~  343 (346)
                      |++++
T Consensus       312 Iyl~~  316 (319)
T KOG4714|consen  312 IYLTR  316 (319)
T ss_pred             EEEec
Confidence            88875

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.32  E-value=1.5e-09  Score=83.50  Aligned_cols=184  Identities=9%  Similarity=0.054  Sum_probs=123.7

Q ss_pred             cCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCC
Q 019059           87 TGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG  166 (346)
Q Consensus        87 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~  166 (346)
                      ||.-|.+.+|....        ....++....|...|.-+.=..+...-+..++.|.++++.+++.+..........   
T Consensus        90 gG~~g~fd~~~~~t--------n~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~---  158 (344)
T KOG4532|consen   90 GGASGQFDLFACNT--------NDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQN---  158 (344)
T ss_pred             ccccceeeeecccC--------cccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccc---
Confidence            68899999999872        1223333344444332222222222225666678888888887544322222211   


Q ss_pred             CceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCcc-ceeecc----ceeEEEeCCCCCcEEEEecCCCeEEEEEcccC
Q 019059          167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKT-NSIEHA----HVRNVDYDTKKKHLLVTAADESGIHLWDLRML  241 (346)
Q Consensus       167 ~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~----~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  241 (346)
                        -.+.+++++++++++++.+....|..|.+...... ..+..+    +--+..|+.... .+|++..||++.|||+|..
T Consensus       159 --~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~-~FAv~~Qdg~~~I~DVR~~  235 (344)
T KOG4532|consen  159 --LTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL-QFAVVFQDGTCAIYDVRNM  235 (344)
T ss_pred             --cceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc-eEEEEecCCcEEEEEeccc
Confidence              14788999999999999999999999988754322 222211    166788998887 8999999999999999987


Q ss_pred             Ccceeee----cCCCcceEEEEeCCCCC-cEEEEecCCCeEEEEecCC
Q 019059          242 KAPIQEL----PGHTHWTWAVCCNPEYD-GFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       242 ~~~~~~~----~~~~~~v~~v~~~~~~~-~~l~s~~~d~~i~iwd~~~  284 (346)
                      ..|....    ..|.+.+..+.|++.|. .+|...-.-+.+.+-|++.
T Consensus       236 ~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~  283 (344)
T KOG4532|consen  236 ATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN  283 (344)
T ss_pred             ccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc
Confidence            6655433    35889999999998774 2344444456899999998

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.31  E-value=2.7e-11  Score=102.11  Aligned_cols=214  Identities=16%  Similarity=0.176  Sum_probs=149.8

Q ss_pred             eEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCC
Q 019059           55 ELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRH  134 (346)
Q Consensus        55 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  134 (346)
                      .+....+.+|+..|..++--.+...++++    +.|.+|++|.+.....+  ..+..+..++..|+.+|.++.|-.+.++
T Consensus       725 ~irL~nf~GH~~~iRai~AidNENSFiSA----SkDKTVKLWSik~EgD~--~~tsaCQfTY~aHkk~i~~igfL~~lr~  798 (1034)
T KOG4190|consen  725 HIRLCNFTGHQEKIRAIAAIDNENSFISA----SKDKTVKLWSIKPEGDE--IGTSACQFTYQAHKKPIHDIGFLADLRS  798 (1034)
T ss_pred             eeeeecccCcHHHhHHHHhcccccceeec----cCCceEEEEEeccccCc--cccceeeeEhhhccCcccceeeeeccce
Confidence            34446678999999998887777777775    79999999999843221  1233466678899999999999998873


Q ss_pred             cEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCC--CCcEEEE-ecCCeEEEEEccCCCccceeecc--
Q 019059          135 DKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPH--DVNAVAA-TCESSVQFWDLRSMGKTNSIEHA--  209 (346)
Q Consensus       135 ~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~--  209 (346)
                        ++++ |+-|.+||.-.+....+.......+   .+..+..-|+  ...++++ +...+++++|.+..+-...++..  
T Consensus       799 --i~Sc-D~giHlWDPFigr~Laq~~dapk~~---a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna  872 (1034)
T KOG4190|consen  799 --IASC-DGGIHLWDPFIGRLLAQMEDAPKEG---AGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNA  872 (1034)
T ss_pred             --eeec-cCcceeecccccchhHhhhcCcccC---CCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccC
Confidence              4444 8999999987665544444333333   2333333333  3445555 35789999999988755444321  


Q ss_pred             ---c--eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEE-EecC
Q 019059          210 ---H--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNL-WLVS  283 (346)
Q Consensus       210 ---~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~i-wd~~  283 (346)
                         .  +++++..+.|+ .++++-.+|.|.+.|.|+ +..+..++.-+-....++ .|.. +.|+....|.++.+ |...
T Consensus       873 ~~Pna~~R~iaVa~~GN-~lAa~LSnGci~~LDaR~-G~vINswrpmecdllqla-apsd-q~L~~saldHslaVnWhal  948 (1034)
T KOG4190|consen  873 PGPNALTRAIAVADKGN-KLAAALSNGCIAILDARN-GKVINSWRPMECDLLQLA-APSD-QALAQSALDHSLAVNWHAL  948 (1034)
T ss_pred             CCCchheeEEEeccCcc-hhhHHhcCCcEEEEecCC-CceeccCCcccchhhhhc-Cchh-HHHHhhcccceeEeeehhc
Confidence               1  89999999998 899999999999999998 556666655444444443 3444 67888888888888 8655


Q ss_pred             C
Q 019059          284 T  284 (346)
Q Consensus       284 ~  284 (346)
                      .
T Consensus       949 d  949 (1034)
T KOG4190|consen  949 D  949 (1034)
T ss_pred             C
Confidence            4

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.31  E-value=1.7e-08  Score=81.88  Aligned_cols=224  Identities=14%  Similarity=0.074  Sum_probs=140.4

Q ss_pred             EeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEee-cCCCCcEEEEecCCeEEEE
Q 019059           70 DLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWW-SSGRHDKLVSIDEENIFLW  148 (346)
Q Consensus        70 ~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~d~~i~vw  148 (346)
                      ++.|.+....|+.+   .-..+.|..|+..         .... ..+....  ...+.+. +++.  ++++. .+.+.++
T Consensus         4 gp~~d~~~g~l~~~---D~~~~~i~~~~~~---------~~~~-~~~~~~~--~~G~~~~~~~g~--l~v~~-~~~~~~~   65 (246)
T PF08450_consen    4 GPVWDPRDGRLYWV---DIPGGRIYRVDPD---------TGEV-EVIDLPG--PNGMAFDRPDGR--LYVAD-SGGIAVV   65 (246)
T ss_dssp             EEEEETTTTEEEEE---ETTTTEEEEEETT---------TTEE-EEEESSS--EEEEEEECTTSE--EEEEE-TTCEEEE
T ss_pred             ceEEECCCCEEEEE---EcCCCEEEEEECC---------CCeE-EEEecCC--CceEEEEccCCE--EEEEE-cCceEEE
Confidence            57888855566655   3467788889876         2222 2232222  6777777 6655  55554 3555666


Q ss_pred             EcCCCCCCceeeecccCC-CceeeEEEEeCCCCCcEEEEecC--------CeEEEEEccCCCccceeeccc-eeEEEeCC
Q 019059          149 SLDCSNKNAQVQSKQSSG-MLHYLSGGAWDPHDVNAVAATCE--------SSVQFWDLRSMGKTNSIEHAH-VRNVDYDT  218 (346)
Q Consensus       149 d~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d--------~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~  218 (346)
                      |..+++. ..+....... .....+.+++.|+|+..++....        |.|..++.. ++.......-. .+.|+|+|
T Consensus        66 d~~~g~~-~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~  143 (246)
T PF08450_consen   66 DPDTGKV-TVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSP  143 (246)
T ss_dssp             ETTTTEE-EEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEET
T ss_pred             ecCCCcE-EEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECC
Confidence            8876542 2222221122 45578999999999966655432        557777777 44333333223 89999999


Q ss_pred             CCCcEEEEecCCCeEEEEEcccCCcce---e---eecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCc
Q 019059          219 KKKHLLVTAADESGIHLWDLRMLKAPI---Q---ELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPS  292 (346)
Q Consensus       219 ~~~~~l~~~~~dg~i~i~d~~~~~~~~---~---~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  292 (346)
                      +++.++++-+..+.|..+++......+   +   .+.......-.+++..+| ++.++.-..+.|.++|.+         
T Consensus       144 dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G-~l~va~~~~~~I~~~~p~---------  213 (246)
T PF08450_consen  144 DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG-NLWVADWGGGRIVVFDPD---------  213 (246)
T ss_dssp             TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETT---------
T ss_pred             cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC-CEEEEEcCCCEEEEECCC---------
Confidence            998666677888899999987533211   1   222222347789999999 777777678899999987         


Q ss_pred             ccccCCccccccccccccccccceeeEEEe-CCCCCcEEEEee
Q 019059          293 ESLVESPNQRANSLLNSYSDYEDSVYGLAW-SSREPWIFASLS  334 (346)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~l~s~~  334 (346)
                                 ++.+..+.-....+++++| -|+.+.+++|.+
T Consensus       214 -----------G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTta  245 (246)
T PF08450_consen  214 -----------GKLLREIELPVPRPTNCAFGGPDGKTLYVTTA  245 (246)
T ss_dssp             -----------SCEEEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred             -----------ccEEEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence                       4666555544446899999 466665666653

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.30  E-value=2.1e-11  Score=115.27  Aligned_cols=187  Identities=13%  Similarity=0.204  Sum_probs=142.4

Q ss_pred             ccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEc
Q 019059          118 AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDL  197 (346)
Q Consensus       118 ~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~  197 (346)
                      .+-..|.++.=+|...+ +++++.||.|++|....++.........   . ..++.+.|+.+|+....+..||.+.+|..
T Consensus      2206 ~~v~~v~r~~sHp~~~~-Yltgs~dgsv~~~~w~~~~~v~~~rt~g---~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPY-YLTGSQDGSVRMFEWGHGQQVVCFRTAG---N-SRVTRSRFNHQGNKFGIVDGDGDLSLWQA 2280 (2439)
T ss_pred             cccCceeeecCCCCCce-EEecCCCceEEEEeccCCCeEEEeeccC---c-chhhhhhhcccCCceeeeccCCceeeccc
Confidence            34566788888888885 8888899999999988766544443322   2 58899999999999999999999999998


Q ss_pred             cCCCccceeeccc---eeEEEeCCCCCcEEEEec---CCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEe
Q 019059          198 RSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAA---DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSA  271 (346)
Q Consensus       198 ~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~  271 (346)
                      . .++....+ .|   ...+.|-.  . ++++++   .++.+.+||.-.....-..-..|.+.++++++.|.. .+|++|
T Consensus      2281 ~-pk~~~s~q-chnk~~~Df~Fi~--s-~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~-qllisg 2354 (2439)
T KOG1064|consen 2281 S-PKPYTSWQ-CHNKALSDFRFIG--S-LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKH-QLLISG 2354 (2439)
T ss_pred             C-Ccceeccc-cCCccccceeeee--h-hhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcc-eEEEec
Confidence            8 44444433 33   66666654  3 566654   567899999764332222226799999999999999 999999


Q ss_pred             cCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          272 GTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       272 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      |.+|.|++||++.                   .++.+.++.         ++ .. .++++++..|.++||++.
T Consensus      2355 gr~G~v~l~D~rq-------------------rql~h~~~~---------~~-~~-~~f~~~ss~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2355 GRKGEVCLFDIRQ-------------------RQLRHTFQA---------LD-TR-EYFVTGSSEGNIKIWRLS 2398 (2439)
T ss_pred             CCcCcEEEeehHH-------------------HHHHHHhhh---------hh-hh-heeeccCcccceEEEEcc
Confidence            9999999999997                   677766654         44 23 489999999999999985

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.30  E-value=1.7e-10  Score=100.13  Aligned_cols=241  Identities=10%  Similarity=0.074  Sum_probs=165.9

Q ss_pred             ccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCC------CCccceeeeeeeccCCceEEEEeecCCCCcEEE
Q 019059           65 PNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQL------NSPQLERIAALDAHVGKINCVLWWSSGRHDKLV  138 (346)
Q Consensus        65 ~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  138 (346)
                      .....|++|+....++++    ||.||.++|-.+.......      ...+...-+++.+|.+.|.-+.|+.+.+. +.+
T Consensus        14 nvkL~c~~WNke~gyIAc----gG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QK-LTt   88 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIAC----GGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQK-LTT   88 (1189)
T ss_pred             CceEEEEEEcccCCeEEe----ccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccc-ccc
Confidence            356789999998888877    5899999999887432211      11123334578899999999999988774 666


Q ss_pred             EecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCcc-ceeeccceeEEEeC
Q 019059          139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKT-NSIEHAHVRNVDYD  217 (346)
Q Consensus       139 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~v~~~~~~  217 (346)
                      +..+|.|.+|-+-++.-..+.....   ..+-|.+++|+.+|..+...-.||.|.+=.+...+.- +.++..+...+.|+
T Consensus        89 SDt~GlIiVWmlykgsW~EEMiNnR---nKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws  165 (1189)
T KOG2041|consen   89 SDTSGLIIVWMLYKGSWCEEMINNR---NKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWS  165 (1189)
T ss_pred             cCCCceEEEEeeecccHHHHHhhCc---CccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeec
Confidence            6679999999998776444443332   3347899999999999999999999988777654322 22222227789999


Q ss_pred             CCCCcEEEEecCCCeEEEEEcccCC------cceee----ecCCCcceEEEEeC--------CCCCcEEEEecCCCeEEE
Q 019059          218 TKKKHLLVTAADESGIHLWDLRMLK------APIQE----LPGHTHWTWAVCCN--------PEYDGFILSAGTDSTVNL  279 (346)
Q Consensus       218 ~~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~----~~~~~~~v~~v~~~--------~~~~~~l~s~~~d~~i~i  279 (346)
                      +|.+ .++.+-.+|.++++|....-      .+...    +......|-.+.|.        |+. ..|+.+-.+|.+.|
T Consensus       166 ~D~~-~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdr-P~lavcy~nGr~Qi  243 (1189)
T KOG2041|consen  166 EDLE-QALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDR-PRLAVCYANGRMQI  243 (1189)
T ss_pred             ccHH-HHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCC-CEEEEEEcCceehh
Confidence            9998 77777888999999965311      01011    11122234455553        455 78888888998888


Q ss_pred             EecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecC
Q 019059          280 WLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYD  336 (346)
Q Consensus       280 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  336 (346)
                      ..-..                  ..+++..-.+  -.|..+.|+++|. .|+.++.|
T Consensus       244 MR~eN------------------D~~Pvv~dtg--m~~vgakWnh~G~-vLAvcG~~  279 (1189)
T KOG2041|consen  244 MRSEN------------------DPEPVVVDTG--MKIVGAKWNHNGA-VLAVCGND  279 (1189)
T ss_pred             hhhcC------------------CCCCeEEecc--cEeecceecCCCc-EEEEccCc
Confidence            65444                  1333333333  3488999999997 88888765

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.28  E-value=9.9e-09  Score=85.32  Aligned_cols=146  Identities=14%  Similarity=0.146  Sum_probs=107.2

Q ss_pred             eeccccceEEeeecCCCCceEEEEeecCCcc-eEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEE
Q 019059           61 LFSHPNEIWDLSSCPFDQRIFSTVFSTGESY-GAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS  139 (346)
Q Consensus        61 ~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~-~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  139 (346)
                      ..+|.+.|.-..+.-+++.++.+    ..|| .+-|+|.+          +..+..+...-+.|.++..+++|+. ++++
T Consensus       355 qv~~~~~VrY~r~~~~~e~~vig----t~dgD~l~iyd~~----------~~e~kr~e~~lg~I~av~vs~dGK~-~vva  419 (668)
T COG4946         355 QVGKKGGVRYRRIQVDPEGDVIG----TNDGDKLGIYDKD----------GGEVKRIEKDLGNIEAVKVSPDGKK-VVVA  419 (668)
T ss_pred             EcCCCCceEEEEEccCCcceEEe----ccCCceEEEEecC----------CceEEEeeCCccceEEEEEcCCCcE-EEEE
Confidence            34688889888888877777765    3666 89999987          3444566677789999999999995 5555


Q ss_pred             ecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecC----CeEEEEEccCCCccceeec-cceeEE
Q 019059          140 IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE----SSVQFWDLRSMGKTNSIEH-AHVRNV  214 (346)
Q Consensus       140 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~-~~v~~~  214 (346)
                      .....+.+.|+++++.  +...+...+   -|+.+.|+|++++++-+--+    ..|+++|+..++......+ ++-.+-
T Consensus       420 Ndr~el~vididngnv--~~idkS~~~---lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsP  494 (668)
T COG4946         420 NDRFELWVIDIDNGNV--RLIDKSEYG---LITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSP  494 (668)
T ss_pred             cCceEEEEEEecCCCe--eEecccccc---eeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCc
Confidence            5567888889887753  333333223   79999999999999987654    4799999998876544332 226678


Q ss_pred             EeCCCCCcEEEE
Q 019059          215 DYDTKKKHLLVT  226 (346)
Q Consensus       215 ~~~~~~~~~l~~  226 (346)
                      +|.|+++++...
T Consensus       495 aFD~d~ryLYfL  506 (668)
T COG4946         495 AFDPDGRYLYFL  506 (668)
T ss_pred             ccCCCCcEEEEE
Confidence            899999865443

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.27  E-value=2.6e-09  Score=90.24  Aligned_cols=237  Identities=12%  Similarity=0.213  Sum_probs=140.5

Q ss_pred             EEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEe--------
Q 019059           69 WDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI--------  140 (346)
Q Consensus        69 ~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--------  140 (346)
                      +-+.|||.|.+|++-     ....|.+|--+         ....++.+ .|. .|.-+.|||..++++.-+.        
T Consensus       214 tyv~wSP~GTYL~t~-----Hk~GI~lWGG~---------~f~r~~RF-~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~  277 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTF-----HKQGIALWGGE---------SFDRIQRF-YHP-GVQFIDFSPNEKYLVTYSPEPIIVEED  277 (698)
T ss_pred             eeEEecCCceEEEEE-----eccceeeecCc---------cHHHHHhc-cCC-CceeeecCCccceEEEecCCccccCcc
Confidence            568999999999986     55679999865         66666666 565 4789999999997333331        


Q ss_pred             --cCCeEEEEEcCCCCCCceeeecc---------------------------------------cCCCceeeEEEEeCCC
Q 019059          141 --DEENIFLWSLDCSNKNAQVQSKQ---------------------------------------SSGMLHYLSGGAWDPH  179 (346)
Q Consensus       141 --~d~~i~vwd~~~~~~~~~~~~~~---------------------------------------~~~~~~~v~~~~~~~~  179 (346)
                        +...++|||+.++.....+....                                       ..-....|....|+|.
T Consensus       278 d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~  357 (698)
T KOG2314|consen  278 DNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPT  357 (698)
T ss_pred             cCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCC
Confidence              12689999999885433322200                                       0011223445566666


Q ss_pred             CCcEEEEec--C---CeEEEEE----------------------------------------------------ccCCC-
Q 019059          180 DVNAVAATC--E---SSVQFWD----------------------------------------------------LRSMG-  201 (346)
Q Consensus       180 ~~~l~~~~~--d---~~i~i~d----------------------------------------------------~~~~~-  201 (346)
                      +..|+--..  +   ..+.+..                                                    ++... 
T Consensus       358 ~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI  437 (698)
T KOG2314|consen  358 SNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI  437 (698)
T ss_pred             cceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC
Confidence            554443221  0   0111111                                                    11000 


Q ss_pred             ccceeeccc-eeEEEeCCCCCcEEEEec-C--CCeEEEEEccc-CCc--ceeeecCCCcceEEEEeCCCCCcEEEEe---
Q 019059          202 KTNSIEHAH-VRNVDYDTKKKHLLVTAA-D--ESGIHLWDLRM-LKA--PIQELPGHTHWTWAVCCNPEYDGFILSA---  271 (346)
Q Consensus       202 ~~~~~~~~~-v~~~~~~~~~~~~l~~~~-~--dg~i~i~d~~~-~~~--~~~~~~~~~~~v~~v~~~~~~~~~l~s~---  271 (346)
                      ++..+.... |...+|-|.|+ .+++-+ .  ..++++|-+.+ ...  .+..+.  ....+.+.|+|.| ++++.+   
T Consensus       438 pve~velke~vi~FaWEP~gd-kF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG-~fvvva~l~  513 (698)
T KOG2314|consen  438 PVEVVELKESVIAFAWEPHGD-KFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKG-RFVVVAALV  513 (698)
T ss_pred             CceeeecchheeeeeeccCCC-eEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCC-cEEEEEEec
Confidence            000011011 77889999998 444433 2  24788888873 222  223332  3556889999999 777665   


Q ss_pred             cCCCeEEEEecCCCCCCCCCcccccCCccccccccccc-cccccceeeEEEeCCCCCcEEEEeec------CCeEEEeee
Q 019059          272 GTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNS-YSDYEDSVYGLAWSSREPWIFASLSY------DGRVRNHML  344 (346)
Q Consensus       272 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~------d~~v~vw~~  344 (346)
                      |..|.+.++|+..                   ..+..+ ...|.. .+.+.|.|.|+ ++++++.      |.--++|++
T Consensus       514 s~~g~l~F~D~~~-------------------a~~k~~~~~eh~~-at~veWDPtGR-YvvT~ss~wrhk~d~GYri~tf  572 (698)
T KOG2314|consen  514 SRRGDLEFYDTDY-------------------ADLKDTASPEHFA-ATEVEWDPTGR-YVVTSSSSWRHKVDNGYRIFTF  572 (698)
T ss_pred             ccccceEEEecch-------------------hhhhhccCccccc-cccceECCCCC-EEEEeeehhhhccccceEEEEe
Confidence            4568899999985                   222221 223443 68899999997 7777764      445677776


Q ss_pred             cC
Q 019059          345 EK  346 (346)
Q Consensus       345 ~~  346 (346)
                      +|
T Consensus       573 qG  574 (698)
T KOG2314|consen  573 QG  574 (698)
T ss_pred             ec
Confidence            54

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.19  E-value=3.4e-08  Score=94.96  Aligned_cols=202  Identities=12%  Similarity=0.086  Sum_probs=132.8

Q ss_pred             ceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeecc-----------------CCceEEEEee
Q 019059           67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH-----------------VGKINCVLWW  129 (346)
Q Consensus        67 ~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~i~~~~~~  129 (346)
                      ....+++.+++..|+++   ......|+++|+..          ..+.++.+.                 -..-..++++
T Consensus       625 ~P~GIavd~~gn~LYVa---Dt~n~~Ir~id~~~----------~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~d  691 (1057)
T PLN02919        625 RPQGLAYNAKKNLLYVA---DTENHALREIDFVN----------ETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFE  691 (1057)
T ss_pred             CCcEEEEeCCCCEEEEE---eCCCceEEEEecCC----------CEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEe
Confidence            35788999887766665   34456899998762          122222110                 1123578999


Q ss_pred             cCCCCcEEEEecCCeEEEEEcCCCCCCceeeec----cc------CCCceeeEEEEeCCCCCcEEEEe-cCCeEEEEEcc
Q 019059          130 SSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK----QS------SGMLHYLSGGAWDPHDVNAVAAT-CESSVQFWDLR  198 (346)
Q Consensus       130 ~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~----~~------~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~  198 (346)
                      |++..++++...++.|++||..++... .+...    ..      ........+++++|++..|+++. .++.|++||+.
T Consensus       692 p~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~  770 (1057)
T PLN02919        692 PVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLK  770 (1057)
T ss_pred             cCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECC
Confidence            966655666677899999998754321 11000    00      00112457799999998666554 57899999998


Q ss_pred             CCCccce-------------ee----------ccceeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecC-----
Q 019059          199 SMGKTNS-------------IE----------HAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG-----  250 (346)
Q Consensus       199 ~~~~~~~-------------~~----------~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----  250 (346)
                      ++.....             +.          ..+...++++++|. ++++-..++.|++||... . .+..+.+     
T Consensus       771 tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~t-g-~v~tiaG~G~~G  847 (1057)
T PLN02919        771 TGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPAT-K-RVTTLAGTGKAG  847 (1057)
T ss_pred             CCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCC-C-eEEEEeccCCcC
Confidence            7542110             00          01167899999998 888888899999999875 3 2333322     


Q ss_pred             ---------CCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCC
Q 019059          251 ---------HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSN  286 (346)
Q Consensus       251 ---------~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~  286 (346)
                               .-.....++++++| +++++-+.++.|++||+++..
T Consensus       848 ~~dG~~~~a~l~~P~GIavd~dG-~lyVaDt~Nn~Irvid~~~~~  891 (1057)
T PLN02919        848 FKDGKALKAQLSEPAGLALGENG-RLFVADTNNSLIRYLDLNKGE  891 (1057)
T ss_pred             CCCCcccccccCCceEEEEeCCC-CEEEEECCCCEEEEEECCCCc
Confidence                     11346789999999 888888899999999998753

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.17  E-value=3.5e-11  Score=106.72  Aligned_cols=213  Identities=11%  Similarity=0.125  Sum_probs=154.3

Q ss_pred             eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEE
Q 019059           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV  138 (346)
Q Consensus        59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  138 (346)
                      +.+..|...-+|++|+...++|+.+    ...|.|+++++.         ++........|.+.|+-+.-+.+|..++.+
T Consensus      1095 ~~frd~~~~fTc~afs~~~~hL~vG----~~~Geik~~nv~---------sG~~e~s~ncH~SavT~vePs~dgs~~Lts 1161 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVG----SHAGEIKIFNVS---------SGSMEESVNCHQSAVTLVEPSVDGSTQLTS 1161 (1516)
T ss_pred             hhhhccccceeeEEeecCCceEEee----eccceEEEEEcc---------CccccccccccccccccccccCCcceeeee
Confidence            5566788899999999999888884    688999999998         777778889999999999999999964444


Q ss_pred             EecCC-eEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc------e
Q 019059          139 SIDEE-NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH------V  211 (346)
Q Consensus       139 ~~~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~------v  211 (346)
                      ++... ...+|++...........        .-.++.|+.....-+.|+......+||+.++.+..++..+.      -
T Consensus      1162 ss~S~PlsaLW~~~s~~~~~Hsf~--------ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~ 1233 (1516)
T KOG1832|consen 1162 SSSSSPLSALWDASSTGGPRHSFD--------EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSN 1233 (1516)
T ss_pred             ccccCchHHHhccccccCcccccc--------ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhc
Confidence            44443 678999875322222211        45677888765555666666678899999998776643222      6


Q ss_pred             eEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCC
Q 019059          212 RNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELP  291 (346)
Q Consensus       212 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  291 (346)
                      ++..|+|.+. +++   .||  -+||.|. ...++.|...+..+. -.|+|.| ..++.-++     |||+++       
T Consensus      1234 n~a~FsP~D~-LIl---ndG--vLWDvR~-~~aIh~FD~ft~~~~-G~FHP~g-~eVIINSE-----IwD~RT------- 1292 (1516)
T KOG1832|consen 1234 NLAHFSPCDT-LIL---NDG--VLWDVRI-PEAIHRFDQFTDYGG-GGFHPSG-NEVIINSE-----IWDMRT------- 1292 (1516)
T ss_pred             cccccCCCcc-eEe---eCc--eeeeecc-HHHHhhhhhheeccc-ccccCCC-ceEEeech-----hhhhHH-------
Confidence            7889999997 654   456  4799998 456777765443333 3599999 77776553     899999       


Q ss_pred             cccccCCccccccccccccccccceeeEEEeCCCCC
Q 019059          292 SESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREP  327 (346)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  327 (346)
                                  .+.++....-.  -..+.|+..|.
T Consensus      1293 ------------F~lLh~VP~Ld--qc~VtFNstG~ 1314 (1516)
T KOG1832|consen 1293 ------------FKLLHSVPSLD--QCAVTFNSTGD 1314 (1516)
T ss_pred             ------------HHHHhcCcccc--ceEEEeccCcc
Confidence                        77776665443  25677777665

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.17  E-value=1e-07  Score=90.13  Aligned_cols=247  Identities=13%  Similarity=0.143  Sum_probs=147.1

Q ss_pred             cccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCC
Q 019059           64 HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEE  143 (346)
Q Consensus        64 h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~  143 (346)
                      ..+.|.++.+.++...++.+.    .+|-|.+...+.      .+....+.....-+..|.+++||||+..++++++ ++
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~----~~Gdi~~~~~~~------~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~-~~  142 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIAL----ASGDIILVREDP------DPDEDEIEIVGSVDSGILAASWSPDEELLALVTG-EG  142 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEE----CCceEEEEEccC------CCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeC-CC
Confidence            347899999999988887764    677777772221      0011222223233678999999999995444444 66


Q ss_pred             eEEEEEcC----------C-------------CCCCceee------------eccc----CC---CceeeEEEEeCCCCC
Q 019059          144 NIFLWSLD----------C-------------SNKNAQVQ------------SKQS----SG---MLHYLSGGAWDPHDV  181 (346)
Q Consensus       144 ~i~vwd~~----------~-------------~~~~~~~~------------~~~~----~~---~~~~v~~~~~~~~~~  181 (346)
                      ++.+..-+          .             |++..++.            ....    .+   ....-..++|-.||.
T Consensus       143 ~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~  222 (928)
T PF04762_consen  143 NLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGE  222 (928)
T ss_pred             EEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCc
Confidence            66654321          0             00000000            0000    00   223456789999999


Q ss_pred             cEEEEec---C---CeEEEEEccCCCccceeeccc--eeEEEeCCCCCcEEEEecC---CCeEEEEEcccCCcceeeec-
Q 019059          182 NAVAATC---E---SSVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAAD---ESGIHLWDLRMLKAPIQELP-  249 (346)
Q Consensus       182 ~l~~~~~---d---~~i~i~d~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~-  249 (346)
                      ++++.+-   .   ..++||+.+ |....+-.+-.  -.+++|.|.|. ++++...   ...|.+|.-.  +.....|. 
T Consensus       223 yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~-lIA~~q~~~~~~~VvFfErN--GLrhgeF~l  298 (928)
T PF04762_consen  223 YFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGN-LIASSQRLPDRHDVVFFERN--GLRHGEFTL  298 (928)
T ss_pred             EEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCC-EEEEEEEcCCCcEEEEEecC--CcEeeeEec
Confidence            9998863   2   579999976 54332222111  56899999998 7777653   2356666532  22122222 


Q ss_pred             ---CCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccccc-ccceeeEEEeCCC
Q 019059          250 ---GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD-YEDSVYGLAWSSR  325 (346)
Q Consensus       250 ---~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~  325 (346)
                         .....|..+.|++++ ..||..-.|. |.+|-....                 -+-+.+.+.- ....+..+.|+|.
T Consensus       299 ~~~~~~~~v~~l~Wn~ds-~iLAv~~~~~-vqLWt~~NY-----------------HWYLKqei~~~~~~~~~~~~Wdpe  359 (928)
T PF04762_consen  299 RFDPEEEKVIELAWNSDS-EILAVWLEDR-VQLWTRSNY-----------------HWYLKQEIRFSSSESVNFVKWDPE  359 (928)
T ss_pred             CCCCCCceeeEEEECCCC-CEEEEEecCC-ceEEEeeCC-----------------EEEEEEEEEccCCCCCCceEECCC
Confidence               345679999999999 8999877665 999988761                 0112222221 1222445889987


Q ss_pred             CCcEEEEeecCCeEEEeee
Q 019059          326 EPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       326 ~~~~l~s~~~d~~v~vw~~  344 (346)
                      .+..|.....++.+..+++
T Consensus       360 ~p~~L~v~t~~g~~~~~~~  378 (928)
T PF04762_consen  360 KPLRLHVLTSNGQYEIYDF  378 (928)
T ss_pred             CCCEEEEEecCCcEEEEEE
Confidence            7766666666676665543

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.16  E-value=8.5e-08  Score=75.03  Aligned_cols=215  Identities=12%  Similarity=0.157  Sum_probs=126.5

Q ss_pred             EEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccce
Q 019059          126 VLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNS  205 (346)
Q Consensus       126 ~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  205 (346)
                      ++.+.+|+  ++|.-.|..|.|-..+..-....-...-..+....-..++|+||+..|+.+...|+|+++|+.... +..
T Consensus         3 ~~~~~~Gk--~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~   79 (282)
T PF15492_consen    3 LALSSDGK--LLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFV   79 (282)
T ss_pred             eeecCCCc--EEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eEE
Confidence            45677888  566666888887766543222211111122233367889999999999999999999999998533 223


Q ss_pred             eeccc---------eeEEEeCCCC-----CcEEEEecCCCeEEEEEccc----CCcceeeec--C-CCcceEEEEeCCCC
Q 019059          206 IEHAH---------VRNVDYDTKK-----KHLLVTAADESGIHLWDLRM----LKAPIQELP--G-HTHWTWAVCCNPEY  264 (346)
Q Consensus       206 ~~~~~---------v~~~~~~~~~-----~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~--~-~~~~v~~v~~~~~~  264 (346)
                      +.++.         |..+.|-+..     .+.|++-..+|.++-|-+..    .-+..+.+.  . +...|.++.++|..
T Consensus        80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h  159 (282)
T PF15492_consen   80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH  159 (282)
T ss_pred             cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence            32221         6777775433     22455556677777666532    111222322  2 46799999999998


Q ss_pred             CcEEEEecC-CC----------eEEEEecCCCCCCCC----CcccccCCcccc-ccccc-----cccccccceeeEEEeC
Q 019059          265 DGFILSAGT-DS----------TVNLWLVSTSNHDEL----PSESLVESPNQR-ANSLL-----NSYSDYEDSVYGLAWS  323 (346)
Q Consensus       265 ~~~l~s~~~-d~----------~i~iwd~~~~~~~~~----~~~~~~~~~~~~-~~~~~-----~~~~~~~~~v~~~~~~  323 (346)
                       ++|+.||. ..          -+..|.+-.....-.    ..+.....+.+. ..+..     .........|..|..|
T Consensus       160 -~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlS  238 (282)
T PF15492_consen  160 -RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLS  238 (282)
T ss_pred             -CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEEC
Confidence             77776653 11          255666544221100    000000000000 00100     0111235579999999


Q ss_pred             CCCCcEEEEeecCCeEEEeeec
Q 019059          324 SREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       324 ~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      |||. +||+...+|.|.+|++-
T Consensus       239 Pdg~-~La~ih~sG~lsLW~iP  259 (282)
T PF15492_consen  239 PDGS-LLACIHFSGSLSLWEIP  259 (282)
T ss_pred             CCCC-EEEEEEcCCeEEEEecC
Confidence            9998 99999999999999974

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.15  E-value=3.4e-08  Score=82.83  Aligned_cols=200  Identities=15%  Similarity=0.163  Sum_probs=130.8

Q ss_pred             cceEEeeecCCCCc--eEEE-EeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEe--
Q 019059           66 NEIWDLSSCPFDQR--IFST-VFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI--  140 (346)
Q Consensus        66 ~~v~~~~~~~~~~~--l~~~-~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--  140 (346)
                      ..|....|+|.+..  |+.- .-..+.++.+++|.+.         ....+.+-.-....=..+.|.+.|+++++..-  
T Consensus       174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp---------~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~  244 (561)
T COG5354         174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIP---------KNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTH  244 (561)
T ss_pred             cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEcc---------CCCeeeeeeeEeecccEEEEecCCceEEEEEEEe
Confidence            56888899996433  2221 1235778899999998         33343333333334467889999997655441  


Q ss_pred             --------cCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEe--cCCeEEEEEccCCCccceeeccc
Q 019059          141 --------DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT--CESSVQFWDLRSMGKTNSIEHAH  210 (346)
Q Consensus       141 --------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~  210 (346)
                              ....++++++.........      +...+|..++|.|.++.+++.+  .+..+.++|++.. ....+..+.
T Consensus       245 ~ksnKsyfgesnLyl~~~~e~~i~V~~------~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~~  317 (561)
T COG5354         245 TKSNKSYFGESNLYLLRITERSIPVEK------DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQK  317 (561)
T ss_pred             eecccceeccceEEEEeecccccceec------cccccceeeeecccCCceeEEecccccceeecccccc-eEEecCCcc
Confidence                    1256788888733322221      1234899999999998877665  5789999999976 333333233


Q ss_pred             eeEEEeCCCCCcEEEEec--CCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEec------CCCeEEEEec
Q 019059          211 VRNVDYDTKKKHLLVTAA--DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG------TDSTVNLWLV  282 (346)
Q Consensus       211 v~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~------~d~~i~iwd~  282 (346)
                      =+.+.|+|.+++.|+.|-  ..|.+-+||.......+..+.+  ....-+.|+|++ .++.+..      .|..|.|||+
T Consensus       318 rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~--~n~s~~~wspd~-qF~~~~~ts~k~~~Dn~i~l~~v  394 (561)
T COG5354         318 RNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNG--LNTSYCDWSPDG-QFYDTDTTSEKLRVDNSIKLWDV  394 (561)
T ss_pred             cccccccCcccEEEEecCCccccceEEeccCCceEEEEEeec--CCceEeeccCCc-eEEEecCCCcccccCcceEEEEe
Confidence            778899999995444332  3478999998753333334543  234456799999 7776653      3789999999


Q ss_pred             CC
Q 019059          283 ST  284 (346)
Q Consensus       283 ~~  284 (346)
                      ..
T Consensus       395 ~g  396 (561)
T COG5354         395 YG  396 (561)
T ss_pred             cC
Confidence            85

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.13  E-value=1.5e-09  Score=88.06  Aligned_cols=152  Identities=15%  Similarity=0.148  Sum_probs=105.1

Q ss_pred             eEEEEeCCCCCcEEEEecCCeEEEEEccCCCcccee----eccc-eeEEEeCCCCCcEEE--EecCCCeEEEEEcccCCc
Q 019059          171 LSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSI----EHAH-VRNVDYDTKKKHLLV--TAADESGIHLWDLRMLKA  243 (346)
Q Consensus       171 v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~----~~~~-v~~~~~~~~~~~~l~--~~~~dg~i~i~d~~~~~~  243 (346)
                      ...+..++.++.++++..+....+++.+...+...+    .-.. .+.+.|..+....++  ..++...+.+|....  .
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~--~  142 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS--G  142 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccc--c
Confidence            444566778888888887777777777754431111    1111 445555555442222  233344555555543  3


Q ss_pred             ceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccc-cccccceeeEEEe
Q 019059          244 PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNS-YSDYEDSVYGLAW  322 (346)
Q Consensus       244 ~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~  322 (346)
                      +...+.+|-..++.|+|+||+ ++|+++..|..|+|-....                   ...+.. .-||..-|..++.
T Consensus       143 ~~~~~lGhvSml~dVavS~D~-~~IitaDRDEkIRvs~ypa-------------------~f~IesfclGH~eFVS~isl  202 (390)
T KOG3914|consen  143 RCEPILGHVSMLLDVAVSPDD-QFIITADRDEKIRVSRYPA-------------------TFVIESFCLGHKEFVSTISL  202 (390)
T ss_pred             CcchhhhhhhhhheeeecCCC-CEEEEecCCceEEEEecCc-------------------ccchhhhccccHhheeeeee
Confidence            455667899999999999999 9999999999999977665                   333333 3479999999999


Q ss_pred             CCCCCcEEEEeecCCeEEEeeecC
Q 019059          323 SSREPWIFASLSYDGRVRNHMLEK  346 (346)
Q Consensus       323 ~~~~~~~l~s~~~d~~v~vw~~~~  346 (346)
                      -++.  .|+++|.|++|++||+.+
T Consensus       203 ~~~~--~LlS~sGD~tlr~Wd~~s  224 (390)
T KOG3914|consen  203 TDNY--LLLSGSGDKTLRLWDITS  224 (390)
T ss_pred             ccCc--eeeecCCCCcEEEEeccc
Confidence            9864  689999999999999863

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.10  E-value=4.5e-07  Score=85.87  Aligned_cols=289  Identities=13%  Similarity=0.123  Sum_probs=163.8

Q ss_pred             CCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcc-----------cC-----
Q 019059           40 EENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPEL-----------YG-----  103 (346)
Q Consensus        40 ~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~-----------~~-----  103 (346)
                      ..|.|.++..++..........-.-...|.+++||||+..|+.+.    .++++.+-+-+-.           .+     
T Consensus        95 ~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT----~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~V  170 (928)
T PF04762_consen   95 ASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVT----GEGNLLLMTRDFDPISEVPLDSDDFGESKHV  170 (928)
T ss_pred             CCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEe----CCCEEEEEeccceEEEEeecCccccCCCcee
Confidence            456777775544333333444445567999999999999888874    3445554432200           00     


Q ss_pred             ---------CCCCcccee--------------eeeeeccCCceEEEEeecCCCCcEEEEe--c---CCeEEEEEcCCCCC
Q 019059          104 ---------QLNSPQLER--------------IAALDAHVGKINCVLWWSSGRHDKLVSI--D---EENIFLWSLDCSNK  155 (346)
Q Consensus       104 ---------~~~~~~~~~--------------~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~---d~~i~vwd~~~~~~  155 (346)
                               +..+..++.              ...+. .++.-..++|-.||.++.+.+-  .   -..++||+-+ +. 
T Consensus       171 sVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~-  247 (928)
T PF04762_consen  171 SVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GE-  247 (928)
T ss_pred             eeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ce-
Confidence                     000000110              01122 4445678999999996333332  2   2578999876 22 


Q ss_pred             CceeeecccCCCceeeEEEEeCCCCCcEEEEec---CCeEEEEEccCCCccceeec-----cc-eeEEEeCCCCCcEEEE
Q 019059          156 NAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC---ESSVQFWDLRSMGKTNSIEH-----AH-VRNVDYDTKKKHLLVT  226 (346)
Q Consensus       156 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~-----~~-v~~~~~~~~~~~~l~~  226 (346)
                      ...... .   ...--..++|.|.|+.+++.-.   ...|.+|.-+ |-.-..|..     .. |..+.|++++. +|+.
T Consensus       248 L~stSE-~---v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~-iLAv  321 (928)
T PF04762_consen  248 LQSTSE-P---VDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAWNSDSE-ILAV  321 (928)
T ss_pred             EEeccc-c---CCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCCceeeEEEECCCCC-EEEE
Confidence            111111 1   1112356799999998887764   3456666643 333322221     12 99999999998 8887


Q ss_pred             ecCCCeEEEEEcccCCcce-eeec-CCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC----CCCC---CCCccc-cc
Q 019059          227 AADESGIHLWDLRMLKAPI-QELP-GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST----SNHD---ELPSES-LV  296 (346)
Q Consensus       227 ~~~dg~i~i~d~~~~~~~~-~~~~-~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~----~~~~---~~~~~~-~~  296 (346)
                      -..| .|.+|-..+..=.+ +.+. .....+..+.|+|..+..|...+.+|.+..++..-    ....   +..... .+
T Consensus       322 ~~~~-~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVID  400 (928)
T PF04762_consen  322 WLED-RVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVID  400 (928)
T ss_pred             EecC-CceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEe
Confidence            6655 49999887643111 2222 12334555999998878888888877776655432    1100   000000 00


Q ss_pred             CC-------ccccccccc--cccccccceeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059          297 ES-------PNQRANSLL--NSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       297 ~~-------~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~  344 (346)
                      ..       .....++++  ..+. -..+|.+++|++++. .+++...||.+.+|..
T Consensus       401 G~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~~~~-~~avl~~d~~l~~~~~  455 (928)
T PF04762_consen  401 GNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSPSNS-RFAVLTSDGSLSIYEW  455 (928)
T ss_pred             CCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeCCCC-eEEEEECCCCEEEEEe
Confidence            00       000111111  2222 245799999999987 6888899999999984

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.10  E-value=3.1e-09  Score=86.25  Aligned_cols=154  Identities=18%  Similarity=0.229  Sum_probs=98.6

Q ss_pred             EEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecC---CeEEEEEccCC
Q 019059          124 NCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE---SSVQFWDLRSM  200 (346)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~  200 (346)
                      ..+..+++++ +++.+..+....+++........++....  ......+.+.|..+......+-.-   ..+.+|....+
T Consensus        66 ~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~~~kl~~~~--~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~  142 (390)
T KOG3914|consen   66 ALVLTSDSGR-LVAVATSSKQRAVFDYRENPKGAKLLDVS--CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG  142 (390)
T ss_pred             cccccCCCce-EEEEEeCCCceEEEEEecCCCcceeeeEe--ecccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence            3444566666 34444335565566666544322222111  011133455555555555555443   44555554444


Q ss_pred             Cccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeee-cCCCcceEEEEeCCCCCcEEEEecCCCe
Q 019059          201 GKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL-PGHTHWTWAVCCNPEYDGFILSAGTDST  276 (346)
Q Consensus       201 ~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~v~~~~~~~~~l~s~~~d~~  276 (346)
                      .+...+  +|   ++.++|+||++ .++++..|..|++-...... .+..+ .+|+.-|..++.-++.  .|+++|.|++
T Consensus       143 ~~~~~l--GhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~f-~IesfclGH~eFVS~isl~~~~--~LlS~sGD~t  216 (390)
T KOG3914|consen  143 RCEPIL--GHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPATF-VIESFCLGHKEFVSTISLTDNY--LLLSGSGDKT  216 (390)
T ss_pred             Ccchhh--hhhhhhheeeecCCCC-EEEEecCCceEEEEecCccc-chhhhccccHhheeeeeeccCc--eeeecCCCCc
Confidence            443333  56   99999999998 89999999999998877533 44444 4799999999998874  5899999999


Q ss_pred             EEEEecCCCC
Q 019059          277 VNLWLVSTSN  286 (346)
Q Consensus       277 i~iwd~~~~~  286 (346)
                      |++||+.+++
T Consensus       217 lr~Wd~~sgk  226 (390)
T KOG3914|consen  217 LRLWDITSGK  226 (390)
T ss_pred             EEEEecccCC
Confidence            9999999853

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.10  E-value=1.1e-09  Score=83.98  Aligned_cols=147  Identities=12%  Similarity=0.165  Sum_probs=100.5

Q ss_pred             CCCcEEEEecCCeEEEEEccCCCcc-ceeeccc--eeEEEeCCCCCcEEEEec-----CCCeEEEEEcccCCcceeeecC
Q 019059          179 HDVNAVAATCESSVQFWDLRSMGKT-NSIEHAH--VRNVDYDTKKKHLLVTAA-----DESGIHLWDLRMLKAPIQELPG  250 (346)
Q Consensus       179 ~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~--v~~~~~~~~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~~  250 (346)
                      .+..++++..||.+.+.+.+.-..+ ..+...+  -.+.+....++ ++.++.     .-+..+.|+++..+..+...+.
T Consensus       100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~-~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~  178 (319)
T KOG4714|consen  100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGN-SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKA  178 (319)
T ss_pred             cCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeeccc-EEecCCcceEeeccceeeecccccccccccccc
Confidence            3567888899999999998762211 1222111  22333334444 333322     1234556666643322222222


Q ss_pred             CCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEE
Q 019059          251 HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIF  330 (346)
Q Consensus       251 ~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  330 (346)
                       ...|.+++-+|....++++|+.||.+.+||.+.                  ...+...+..|..+++.+.|+|..+..|
T Consensus       179 -~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn------------------~~~p~S~l~ahk~~i~eV~FHpk~p~~L  239 (319)
T KOG4714|consen  179 -LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARN------------------VAMPVSLLKAHKAEIWEVHFHPKNPEHL  239 (319)
T ss_pred             -cccchhhhCCcccccEEEEecCCCeEEEEEccc------------------ccchHHHHHHhhhhhhheeccCCCchhe
Confidence             234999999998878899999999999999997                  2456677888999999999999887789


Q ss_pred             EEeecCCeEEEeeec
Q 019059          331 ASLSYDGRVRNHMLE  345 (346)
Q Consensus       331 ~s~~~d~~v~vw~~~  345 (346)
                      +++++||.+-.||-.
T Consensus       240 ft~sedGslw~wdas  254 (319)
T KOG4714|consen  240 FTCSEDGSLWHWDAS  254 (319)
T ss_pred             eEecCCCcEEEEcCC
Confidence            999999999999864

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.06  E-value=6e-08  Score=74.95  Aligned_cols=189  Identities=6%  Similarity=-0.048  Sum_probs=121.5

Q ss_pred             EEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEE-eCCCCCcEEEEecCCeEEEEEccCCCccceeeccc--ee
Q 019059          136 KLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGA-WDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--VR  212 (346)
Q Consensus       136 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--v~  212 (346)
                      ++++|..|...+|...+.+..........    ..|.-+. ..-....+..++.|.++++.++..+........+.  +.
T Consensus        87 la~gG~~g~fd~~~~~tn~~h~~~cd~sn----n~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n  162 (344)
T KOG4532|consen   87 LADGGASGQFDLFACNTNDGHLYQCDVSN----NDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN  162 (344)
T ss_pred             EEeccccceeeeecccCcccceeeecccc----cchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence            55667789999999987654444433221    1121111 11112346677788889998888665544444343  88


Q ss_pred             EEEeCCCCCcEEEEecCCCeEEEEEcccCCcceee--ecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCC
Q 019059          213 NVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQE--LPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDEL  290 (346)
Q Consensus       213 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  290 (346)
                      +++++++++ ++++.++...|-.|.+......+..  ....+..-.+..|+... ..+|++..||++.|||++.....  
T Consensus       163 s~~~snd~~-~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~-~~FAv~~Qdg~~~I~DVR~~~tp--  238 (344)
T KOG4532|consen  163 SLHYSNDPS-WGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND-LQFAVVFQDGTCAIYDVRNMATP--  238 (344)
T ss_pred             eeEEcCCCc-eEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc-ceEEEEecCCcEEEEEecccccc--
Confidence            999999998 8888888889999998865543333  22334455678899988 99999999999999999971000  


Q ss_pred             CcccccCCccccccccccccccccceeeEEEeCCCCCc-EEEEeecCCeEEEeee
Q 019059          291 PSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPW-IFASLSYDGRVRNHML  344 (346)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~d~~v~vw~~  344 (346)
                                  -.+...+-..|.+.++.+.|++.|.. +|.-.-.=+.+.+-|+
T Consensus       239 ------------m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~  281 (344)
T KOG4532|consen  239 ------------MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDT  281 (344)
T ss_pred             ------------hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEc
Confidence                        01112223458889999999986642 2333333345555554

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.05  E-value=9.6e-10  Score=87.52  Aligned_cols=139  Identities=12%  Similarity=0.091  Sum_probs=105.9

Q ss_pred             EEEecCCeEEEEEccCCCccceeeccceeEEEeCCCCCcEEEEecCCCeEEEEEcccC----CcceeeecCCCcceEEEE
Q 019059          184 VAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRML----KAPIQELPGHTHWTWAVC  259 (346)
Q Consensus       184 ~~~~~d~~i~i~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~~v~~v~  259 (346)
                      ++.+.+..+-+-|+.++-.........|.++.|...++ +++.|..+|.|..+|+|..    ..+.+.+. |...|+++.
T Consensus       228 fs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq  305 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQ  305 (425)
T ss_pred             ecccccceeEEEEeecccccccccchhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhh
Confidence            55666778889999887543322222299999998887 9999999999999999974    23455554 889999988


Q ss_pred             eCC-CCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccc---cccccccccee--eEEEeCCCCCcEEEEe
Q 019059          260 CNP-EYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSL---LNSYSDYEDSV--YGLAWSSREPWIFASL  333 (346)
Q Consensus       260 ~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v--~~~~~~~~~~~~l~s~  333 (346)
                      .-. ++ .+|++.+.+|+|++||++.                   -++   +.++.+|...-  .-+...+... .++++
T Consensus       306 ~Lq~s~-q~LmaS~M~gkikLyD~R~-------------------~K~~~~V~qYeGHvN~~a~l~~~v~~eeg-~I~s~  364 (425)
T KOG2695|consen  306 ILQFSQ-QKLMASDMTGKIKLYDLRA-------------------TKCKKSVMQYEGHVNLSAYLPAHVKEEEG-SIFSV  364 (425)
T ss_pred             hhcccc-ceEeeccCcCceeEeeehh-------------------hhcccceeeeecccccccccccccccccc-eEEEc
Confidence            666 44 8899999999999999997                   555   77888885432  2233455554 78889


Q ss_pred             ecCCeEEEeeec
Q 019059          334 SYDGRVRNHMLE  345 (346)
Q Consensus       334 ~~d~~v~vw~~~  345 (346)
                      +.|...|||.+.
T Consensus       365 GdDcytRiWsl~  376 (425)
T KOG2695|consen  365 GDDCYTRIWSLD  376 (425)
T ss_pred             cCeeEEEEEecc
Confidence            999999999986

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.04  E-value=5.5e-10  Score=94.38  Aligned_cols=170  Identities=15%  Similarity=0.214  Sum_probs=118.0

Q ss_pred             eeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCcee--eecccCCCceeeEEEEeCCCCCcEEEEec
Q 019059          111 ERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQV--QSKQSSGMLHYLSGGAWDPHDVNAVAATC  188 (346)
Q Consensus       111 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  188 (346)
                      -.+..+.+|+..|..+.--.+.+. +++++.|.+|++|.++........  .......|..+|.++.|..+-+++++  .
T Consensus       726 irL~nf~GH~~~iRai~AidNENS-FiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--c  802 (1034)
T KOG4190|consen  726 IRLCNFTGHQEKIRAIAAIDNENS-FISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--C  802 (1034)
T ss_pred             eeeecccCcHHHhHHHHhcccccc-eeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--c
Confidence            345667899999988876555443 788889999999999754322221  11223567889999999887666654  5


Q ss_pred             CCeEEEEEccCCCccceeecc--c--eeEEEeCCC-CCcEEEEe-cCCCeEEEEEcccCCcceeeec-----CCCcceEE
Q 019059          189 ESSVQFWDLRSMGKTNSIEHA--H--VRNVDYDTK-KKHLLVTA-ADESGIHLWDLRMLKAPIQELP-----GHTHWTWA  257 (346)
Q Consensus       189 d~~i~i~d~~~~~~~~~~~~~--~--v~~~~~~~~-~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~-----~~~~~v~~  257 (346)
                      |+.|++||.--++.+..+...  +  +..+..-++ .+.+++.| +...+|+++|.|... -...++     +....+.+
T Consensus       803 D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce-~~~E~kVcna~~Pna~~R~  881 (1034)
T KOG4190|consen  803 DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCE-WTCELKVCNAPGPNALTRA  881 (1034)
T ss_pred             cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccccc-ceeeEEeccCCCCchheeE
Confidence            889999999888776644321  1  333333233 22244444 788999999999733 333332     34466889


Q ss_pred             EEeCCCCCcEEEEecCCCeEEEEecCCC
Q 019059          258 VCCNPEYDGFILSAGTDSTVNLWLVSTS  285 (346)
Q Consensus       258 v~~~~~~~~~l~s~~~d~~i~iwd~~~~  285 (346)
                      ++..+.| +.++.+-.+|.|.+.|.+++
T Consensus       882 iaVa~~G-N~lAa~LSnGci~~LDaR~G  908 (1034)
T KOG4190|consen  882 IAVADKG-NKLAAALSNGCIAILDARNG  908 (1034)
T ss_pred             EEeccCc-chhhHHhcCCcEEEEecCCC
Confidence            9999999 99999999999999999983

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.04  E-value=4.2e-10  Score=96.60  Aligned_cols=208  Identities=14%  Similarity=0.238  Sum_probs=140.9

Q ss_pred             cceEEeeecCCCC-ceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEe----
Q 019059           66 NEIWDLSSCPFDQ-RIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI----  140 (346)
Q Consensus        66 ~~v~~~~~~~~~~-~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----  140 (346)
                      ..+.|+++.-+.. .++++   |..+|.|-+-.+.....       .--....++....++++|++-....++++-    
T Consensus        57 qy~kcva~~y~~d~cIlav---G~atG~I~l~s~r~~hd-------Ss~E~tp~~ar~Ct~lAwneLDtn~LAagldkhr  126 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAV---GSATGNISLLSVRHPHD-------SSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHR  126 (783)
T ss_pred             CCceeehhhcCCchhhhhh---ccccCceEEeecCCccc-------ccceecccccccccccccccccHHHHHhhhhhhc
Confidence            3566777654433 56665   57789999988873211       112345577889999999987666566662    


Q ss_pred             cCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCC-CccceeeccceeEEEeCCC
Q 019059          141 DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSM-GKTNSIEHAHVRNVDYDTK  219 (346)
Q Consensus       141 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~v~~~~~~~~  219 (346)
                      .|..+.|||+.+.-...+-......+......+++|..+.+.+++|.....+.++|++.. .....+....+..+..+|-
T Consensus       127 nds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~  206 (783)
T KOG1008|consen  127 NDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPF  206 (783)
T ss_pred             ccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCC
Confidence            367899999987522111111111112335668899988888999988999999999943 2333333222788888885


Q ss_pred             CCcEEEEecCCCeEEEEE-cccCCcceeeecCCCc----ceEEEEeCCCCCcEEEEecCC-CeEEEEecCC
Q 019059          220 KKHLLVTAADESGIHLWD-LRMLKAPIQELPGHTH----WTWAVCCNPEYDGFILSAGTD-STVNLWLVST  284 (346)
Q Consensus       220 ~~~~l~~~~~dg~i~i~d-~~~~~~~~~~~~~~~~----~v~~v~~~~~~~~~l~s~~~d-~~i~iwd~~~  284 (346)
                      ...++++ ..||.|.+|| .++...++..+...+.    .+..++|+|....++++.+.| ++|+++|+..
T Consensus       207 ~~nY~cs-~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  207 SPNYFCS-NSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             CCCceec-cccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            5435554 4589999999 7766666666654443    389999999887788888776 5899999986

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.03  E-value=9.3e-09  Score=80.99  Aligned_cols=256  Identities=17%  Similarity=0.273  Sum_probs=157.2

Q ss_pred             eeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCC--eEEEeeeeccc------------cceEEeeecCCCC--c
Q 019059           16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGT--ELICEGLFSHP------------NEIWDLSSCPFDQ--R   79 (346)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~h~------------~~v~~~~~~~~~~--~   79 (346)
                      +.-++++.++..+.-+++|.    ..|++.++.-.....  ......+.+|.            ..|+.+.|..+++  +
T Consensus        26 ad~ItaVefd~tg~YlatGD----kgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~h  101 (460)
T COG5170          26 ADKITAVEFDETGLYLATGD----KGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNH  101 (460)
T ss_pred             cceeeEEEeccccceEeecC----CCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcce
Confidence            45677777776666676663    446666654333210  00111223332            5688899976543  2


Q ss_pred             eEEEEeecCCcceEEEEecCcccC------------------CCCCc----------c-----ceeeeee-eccCCceEE
Q 019059           80 IFSTVFSTGESYGAAIWQIPELYG------------------QLNSP----------Q-----LERIAAL-DAHVGKINC  125 (346)
Q Consensus        80 l~~~~~~~~~d~~i~vw~~~~~~~------------------~~~~~----------~-----~~~~~~~-~~~~~~i~~  125 (346)
                      ++.+    +.|.+|++|.+.+..-                  +...+          .     ..+.+.. ..|..-|.+
T Consensus       102 FLls----tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNS  177 (460)
T COG5170         102 FLLS----TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINS  177 (460)
T ss_pred             EEEe----cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeee
Confidence            3332    5999999999864300                  00000          0     0111111 457777889


Q ss_pred             EEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecc---cCCCceeeEEEEeCCCCCcEE-EEecCCeEEEEEccCCC
Q 019059          126 VLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQ---SSGMLHYLSGGAWDPHDVNAV-AATCESSVQFWDLRSMG  201 (346)
Q Consensus       126 ~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~  201 (346)
                      +.|+.|..  .+.+++|=.|.+|+++.......+..-.   ......-|++..|+|....++ -.+..|.|++-|++...
T Consensus       178 iS~NsD~e--t~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~a  255 (460)
T COG5170         178 ISFNSDKE--TLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSA  255 (460)
T ss_pred             eeecCchh--eeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhh
Confidence            99998887  5666678999999998654333333221   111233578889999766554 44568999999999432


Q ss_pred             c------cceee---------ccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCc----------
Q 019059          202 K------TNSIE---------HAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTH----------  253 (346)
Q Consensus       202 ~------~~~~~---------~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----------  253 (346)
                      .      .....         .+-   |..+.|+++|+ ++++-+ --+|++||.+..+.|+.++.-|..          
T Consensus       256 lcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngr-yIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YE  333 (460)
T COG5170         256 LCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGR-YILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYE  333 (460)
T ss_pred             hccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCc-EEEEec-cceEEEEecccccCCceeechHHHHHHHHHhhhh
Confidence            1      11110         011   88999999998 555433 368999999988888888755531          


Q ss_pred             --ce---EEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          254 --WT---WAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       254 --~v---~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                        .|   ..+.|+.+. ..+.+|+..+..-+|-+.+
T Consensus       334 nDaifdkFeisfSgd~-~~v~sgsy~NNfgiyp~~s  368 (460)
T COG5170         334 NDAIFDKFEISFSGDD-KHVLSGSYSNNFGIYPTDS  368 (460)
T ss_pred             ccceeeeEEEEecCCc-ccccccccccceeeecccc
Confidence              22   357788888 8899999888777776443

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.01  E-value=4.8e-07  Score=77.32  Aligned_cols=258  Identities=12%  Similarity=0.147  Sum_probs=139.0

Q ss_pred             CeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeee-eeec--
Q 019059           42 NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIA-ALDA--  118 (346)
Q Consensus        42 ~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~-~~~~--  118 (346)
                      +.++++++....    ...+......+....|||+++.++.+     .++.|.+++...         ....+ +..+  
T Consensus        23 ~~y~i~d~~~~~----~~~l~~~~~~~~~~~~sP~g~~~~~v-----~~~nly~~~~~~---------~~~~~lT~dg~~   84 (353)
T PF00930_consen   23 GDYYIYDIETGE----ITPLTPPPPKLQDAKWSPDGKYIAFV-----RDNNLYLRDLAT---------GQETQLTTDGEP   84 (353)
T ss_dssp             EEEEEEETTTTE----EEESS-EETTBSEEEE-SSSTEEEEE-----ETTEEEEESSTT---------SEEEESES--TT
T ss_pred             eeEEEEecCCCc----eEECcCCccccccceeecCCCeeEEE-----ecCceEEEECCC---------CCeEEeccccce
Confidence            456777776632    22222236788899999999999887     567888888762         21111 1111  


Q ss_pred             -----c---------CCceEEEEeecCCCCcEEEEecCCeEEEEEc----------------------------------
Q 019059          119 -----H---------VGKINCVLWWSSGRHDKLVSIDEENIFLWSL----------------------------------  150 (346)
Q Consensus       119 -----~---------~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~----------------------------------  150 (346)
                           -         -+.-..+-||||++++++..-++..|..+.+                                  
T Consensus        85 ~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~  164 (353)
T PF00930_consen   85 GIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVD  164 (353)
T ss_dssp             TEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEE
T ss_pred             eEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEE
Confidence                 0         1123568899999986666555555444332                                  


Q ss_pred             -CCCCCCceeeec-ccCCCceeeEEEEeCCCCCcEEEEe-c----CCeEEEEEccCCCccceeeccc------eeEEEeC
Q 019059          151 -DCSNKNAQVQSK-QSSGMLHYLSGGAWDPHDVNAVAAT-C----ESSVQFWDLRSMGKTNSIEHAH------VRNVDYD  217 (346)
Q Consensus       151 -~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~-~----d~~i~i~d~~~~~~~~~~~~~~------v~~~~~~  217 (346)
                       .+++.. .+... ........+..+.|.+++..+++.- .    ...+.++|..++..........      .....|.
T Consensus       165 ~~~~~~~-~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~  243 (353)
T PF00930_consen  165 LASGKTT-ELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFL  243 (353)
T ss_dssp             SSSTCCC-EE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-
T ss_pred             CCCCcEE-EeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccc
Confidence             222211 11101 0011234677889998888444433 2    2356778888776543333111      3355554


Q ss_pred             -CCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEE-EEeCCCCCcEEEEecCCC--eEEEEecCCCCCCCCCcc
Q 019059          218 -TKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWA-VCCNPEYDGFILSAGTDS--TVNLWLVSTSNHDELPSE  293 (346)
Q Consensus       218 -~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~-v~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~  293 (346)
                       +++..++.....+|.-+|+-+.......+.+....-.|.. +.+++++..+.+++..++  .-.||.+...        
T Consensus       244 ~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~--------  315 (353)
T PF00930_consen  244 GPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD--------  315 (353)
T ss_dssp             TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT--------
T ss_pred             cCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC--------
Confidence             6666566666688866666555434445566655666754 678888745556666533  4455544430        


Q ss_pred             cccCCccccccccccccccccceeeEEEeCCCCCcEEEEeec
Q 019059          294 SLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSY  335 (346)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  335 (346)
                               .+..+..+......-..+.|||+++.++.+++.
T Consensus       316 ---------~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s~  348 (353)
T PF00930_consen  316 ---------SGGEPKCLTCEDGDHYSASFSPDGKYYVDTYSG  348 (353)
T ss_dssp             ---------ETTEEEESSTTSSTTEEEEE-TTSSEEEEEEES
T ss_pred             ---------CCCCeEeccCCCCCceEEEECCCCCEEEEEEcC
Confidence                     022333343332222689999999976666664

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.99  E-value=1.9e-09  Score=85.91  Aligned_cols=148  Identities=17%  Similarity=0.213  Sum_probs=107.8

Q ss_pred             EeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCC-----C
Q 019059          127 LWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSM-----G  201 (346)
Q Consensus       127 ~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-----~  201 (346)
                      +|+-+-...-++.+.+-.|-+-|++++-.. .+..      ...|.++.|...++.++.|+.+|.|..+|++.+     .
T Consensus       218 awSlni~gyhfs~G~sqqv~L~nvetg~~q-sf~s------ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~  290 (425)
T KOG2695|consen  218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQ-SFQS------KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGW  290 (425)
T ss_pred             hhhhccceeeecccccceeEEEEeeccccc-cccc------chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCc
Confidence            665432221234466788999999876432 2222      337899999988999999999999999999965     3


Q ss_pred             ccceeeccc-eeEEEeCC-CCCcEEEEecCCCeEEEEEcccCCcc---eeeecCCCcceEEEE--eCCCCCcEEEEecCC
Q 019059          202 KTNSIEHAH-VRNVDYDT-KKKHLLVTAADESGIHLWDLRMLKAP---IQELPGHTHWTWAVC--CNPEYDGFILSAGTD  274 (346)
Q Consensus       202 ~~~~~~~~~-v~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~v~~v~--~~~~~~~~l~s~~~d  274 (346)
                      +...+.++. |+++..-. +++ .|++.+-+|+|++||+|. .+.   +.++.+|...-.-+-  ..+.. ..+++++.|
T Consensus       291 ~a~rlyh~Ssvtslq~Lq~s~q-~LmaS~M~gkikLyD~R~-~K~~~~V~qYeGHvN~~a~l~~~v~~ee-g~I~s~GdD  367 (425)
T KOG2695|consen  291 CAQRLYHDSSVTSLQILQFSQQ-KLMASDMTGKIKLYDLRA-TKCKKSVMQYEGHVNLSAYLPAHVKEEE-GSIFSVGDD  367 (425)
T ss_pred             ceEEEEcCcchhhhhhhccccc-eEeeccCcCceeEeeehh-hhcccceeeeeccccccccccccccccc-ceEEEccCe
Confidence            455555555 88877766 455 677788899999999996 334   888889876544443  34444 788899999


Q ss_pred             CeEEEEecCC
Q 019059          275 STVNLWLVST  284 (346)
Q Consensus       275 ~~i~iwd~~~  284 (346)
                      ...|||.++.
T Consensus       368 cytRiWsl~~  377 (425)
T KOG2695|consen  368 CYTRIWSLDS  377 (425)
T ss_pred             eEEEEEeccc
Confidence            9999999998

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.99  E-value=2.5e-06  Score=71.44  Aligned_cols=241  Identities=10%  Similarity=0.049  Sum_probs=132.5

Q ss_pred             CCCCcceEEEeecc-----c-CCCCeEEEEEecCCCCeEEEeeeec-----cccceEEeeecCCCCceEEEEeecCCcce
Q 019059           24 ADTDHTSFLTGTLS-----L-KEENEVHLLRLSSGGTELICEGLFS-----HPNEIWDLSSCPFDQRIFSTVFSTGESYG   92 (346)
Q Consensus        24 ~~~~~~~~~~g~~~-----~-~~~~~i~~~~~~~~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~l~~~~~~~~~d~~   92 (346)
                      .++++..+.+....     - ..+..|.+++....+...... +-.     .......++++|+|++|++.-  -..+..
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~-~p~~p~~~~~~~~~~~~ls~dgk~l~V~n--~~p~~~  129 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIE-LPEGPRFLVGTYPWMTSLTPDNKTLLFYQ--FSPSPA  129 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEc-cCCCchhhccCccceEEECCCCCEEEEec--CCCCCE
Confidence            56666666665321     1 134677777766643211111 000     112234788999999998752  123789


Q ss_pred             EEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeE
Q 019059           93 AAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLS  172 (346)
Q Consensus        93 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~  172 (346)
                      |.+.|+.         ..+.+..+.... ...-...++ ..  +.+-+.||......+++..................+.
T Consensus       130 V~VvD~~---------~~kvv~ei~vp~-~~~vy~t~e-~~--~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~  196 (352)
T TIGR02658       130 VGVVDLE---------GKAFVRMMDVPD-CYHIFPTAN-DT--FFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLI  196 (352)
T ss_pred             EEEEECC---------CCcEEEEEeCCC-CcEEEEecC-Cc--cEEEeecCceEEEEecCCCceEEeeeeeecCCccccc
Confidence            9999998         667777665422 111112221 22  1222335555544444332211110000000000000


Q ss_pred             E-EEeCC-CCCcEEEEecCCeEEEEEccCCC-----ccceeec---------cceeEEEeCCCCCcEEEEec--------
Q 019059          173 G-GAWDP-HDVNAVAATCESSVQFWDLRSMG-----KTNSIEH---------AHVRNVDYDTKKKHLLVTAA--------  228 (346)
Q Consensus       173 ~-~~~~~-~~~~l~~~~~d~~i~i~d~~~~~-----~~~~~~~---------~~v~~~~~~~~~~~~l~~~~--------  228 (346)
                      . -.|.+ ++..+++... |.|.+.|+....     ....+..         +...-++++|++..+++...        
T Consensus       197 ~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk  275 (352)
T TIGR02658       197 NHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHK  275 (352)
T ss_pred             cCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCcccccc
Confidence            0 03445 7777766665 999999965432     2221111         11455999999985544332        


Q ss_pred             -CCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCc-EEEEec-CCCeEEEEecCC
Q 019059          229 -DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG-FILSAG-TDSTVNLWLVST  284 (346)
Q Consensus       229 -~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~-~l~s~~-~d~~i~iwd~~~  284 (346)
                       ..+.|.++|..+ .+.+..+.. ...+..++++|++ + +|++.. .++.|.+.|..+
T Consensus       276 ~~~~~V~ViD~~t-~kvi~~i~v-G~~~~~iavS~Dg-kp~lyvtn~~s~~VsViD~~t  331 (352)
T TIGR02658       276 TASRFLFVVDAKT-GKRLRKIEL-GHEIDSINVSQDA-KPLLYALSTGDKTLYIFDAET  331 (352)
T ss_pred             CCCCEEEEEECCC-CeEEEEEeC-CCceeeEEECCCC-CeEEEEeCCCCCcEEEEECcC
Confidence             124799999987 545665553 5688999999999 5 666555 678899999998

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.97  E-value=7e-07  Score=70.04  Aligned_cols=190  Identities=11%  Similarity=0.162  Sum_probs=106.8

Q ss_pred             ceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeec-------cCCceEEEEeecCC-----CC
Q 019059           67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA-------HVGKINCVLWWSSG-----RH  134 (346)
Q Consensus        67 ~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~-----~~  134 (346)
                      +-..++||||+..|+.+    .+.|+|+++|+..          ..+..+..       -...|..+.|.+-.     .+
T Consensus        45 QWRkl~WSpD~tlLa~a----~S~G~i~vfdl~g----------~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~  110 (282)
T PF15492_consen   45 QWRKLAWSPDCTLLAYA----ESTGTIRVFDLMG----------SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSY  110 (282)
T ss_pred             hheEEEECCCCcEEEEE----cCCCeEEEEeccc----------ceeEEcCcccccCCccccceeeeEeeccccccccce
Confidence            44679999999888886    5788999999862          22222211       23466777775432     22


Q ss_pred             cEEEEecCCeEEEEEcCCC--CCCceeeecc-cCCCceeeEEEEeCCCCCcEEEEecCCe-----------EEEEEccCC
Q 019059          135 DKLVSIDEENIFLWSLDCS--NKNAQVQSKQ-SSGMLHYLSGGAWDPHDVNAVAATCESS-----------VQFWDLRSM  200 (346)
Q Consensus       135 ~~~~~~~d~~i~vwd~~~~--~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~-----------i~i~d~~~~  200 (346)
                      .+++-..+|.++-|-+..+  +...+..... ...+...|.++.++|..+.|++++....           +..|.+-++
T Consensus       111 ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~  190 (282)
T PF15492_consen  111 ELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSD  190 (282)
T ss_pred             eEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCC
Confidence            3555566788887776322  2222211111 1223558999999999888888875321           222322222


Q ss_pred             CccceeeccceeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEE
Q 019059          201 GKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLW  280 (346)
Q Consensus       201 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iw  280 (346)
                      .+...       .+. +.+.. +-......   .+|.+-+.+ ...........|..+..||+| .+||+...+|.|.+|
T Consensus       191 ~Pyyk-------~v~-~~~~~-~~~~~~~~---~~~~~~~~~-~fs~~~~~~d~i~kmSlSPdg-~~La~ih~sG~lsLW  256 (282)
T PF15492_consen  191 SPYYK-------QVT-SSEDD-ITASSKRR---GLLRIPSFK-FFSRQGQEQDGIFKMSLSPDG-SLLACIHFSGSLSLW  256 (282)
T ss_pred             CCcEE-------Ecc-ccCcc-cccccccc---ceeecccee-eeeccccCCCceEEEEECCCC-CEEEEEEcCCeEEEE
Confidence            21111       011 11111 11111111   222222101 011112246789999999999 999999999999999


Q ss_pred             ecCC
Q 019059          281 LVST  284 (346)
Q Consensus       281 d~~~  284 (346)
                      ++..
T Consensus       257 ~iPs  260 (282)
T PF15492_consen  257 EIPS  260 (282)
T ss_pred             ecCc
Confidence            9987

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=1.1e-07  Score=77.54  Aligned_cols=247  Identities=15%  Similarity=0.099  Sum_probs=145.2

Q ss_pred             eeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEE
Q 019059           60 GLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS  139 (346)
Q Consensus        60 ~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  139 (346)
                      .+.+|...|.+++|||...-|+..   ++-+.+|+|.|++         +...+..+..+ ..+++++|.-+..+.+++|
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~---asl~nkiki~dle---------t~~~vssy~a~-~~~wSC~wDlde~h~IYaG  254 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGL---ASLGNKIKIMDLE---------TSCVVSSYIAY-NQIWSCCWDLDERHVIYAG  254 (463)
T ss_pred             cccccchhhhhhccCccccceeee---eccCceEEEEecc---------cceeeeheecc-CCceeeeeccCCcceeEEe
Confidence            455677899999999988866555   3788899999998         66667777777 7899999999999888888


Q ss_pred             ecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCC------CCCcEEEEecCCeEEEEEccCC----Cccceeecc
Q 019059          140 IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDP------HDVNAVAATCESSVQFWDLRSM----GKTNSIEHA  209 (346)
Q Consensus       140 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~l~~~~~d~~i~i~d~~~~----~~~~~~~~~  209 (346)
                      -..|.|.+||++..+..........  ...+|..++.-+      .+..++....  .+..|.+...    .++..+..+
T Consensus       255 l~nG~VlvyD~R~~~~~~~e~~a~~--t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlele~p  330 (463)
T KOG1645|consen  255 LQNGMVLVYDMRQPEGPLMELVANV--TINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLELEPP  330 (463)
T ss_pred             ccCceEEEEEccCCCchHhhhhhhh--ccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCcccccCCC
Confidence            7899999999986554332222111  122444443322      2333333322  2445655422    222333322


Q ss_pred             c-eeEEEeCCCCCcEEEEecCCCe---EE---E-EEcccCCcceee-ecCC-Ccc------eEEEEeCCCCCcEEEEecC
Q 019059          210 H-VRNVDYDTKKKHLLVTAADESG---IH---L-WDLRMLKAPIQE-LPGH-THW------TWAVCCNPEYDGFILSAGT  273 (346)
Q Consensus       210 ~-v~~~~~~~~~~~~l~~~~~dg~---i~---i-~d~~~~~~~~~~-~~~~-~~~------v~~v~~~~~~~~~l~s~~~  273 (346)
                      . +.++.+++-.+.++++.-.+..   ++   . -|-+. +.++.. -..+ ...      -..+.-.++....+..+..
T Consensus       331 G~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~d-G~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~  409 (463)
T KOG1645|consen  331 GICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRD-GFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDS  409 (463)
T ss_pred             cceeeeeecCccceEEEEecCCCCCccceeeeeeecccc-CceeeeecccccCCcccccccccceeccccccEEEEecCC
Confidence            2 6677777766656666544311   11   1 01111 111111 1111 000      0112223444233445666


Q ss_pred             CCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCC-CCCcEEEEeecCCeEEEeeec
Q 019059          274 DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS-REPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       274 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      -+++.+||..+                   .+.++++.-. .+|.++.... ++..+|++-. |..++||..+
T Consensus       410 tn~lil~D~~s-------------------~evvQ~l~~~-epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e  461 (463)
T KOG1645|consen  410 TNELILQDPHS-------------------FEVVQTLALS-EPVLDICPNDTNGSSYLALLT-DDRVHIYKNE  461 (463)
T ss_pred             cceeEEeccch-------------------hheeeecccC-cceeecceeecCCcchhhhee-cceEEEEecC
Confidence            67999999998                   7888877654 6788877654 3444565555 6778888765

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.94  E-value=1.8e-07  Score=78.61  Aligned_cols=237  Identities=11%  Similarity=0.143  Sum_probs=149.1

Q ss_pred             cccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEec--
Q 019059           64 HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSID--  141 (346)
Q Consensus        64 h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--  141 (346)
                      -.-++..++|||.|.+|++.     .-..|.+|.-+         ....+..+ .| ..|..+.|+|.+++ +.+-+.  
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~-----~~~~V~~~~g~---------~~~~l~~~-~~-~~V~~~~fSP~~kY-L~tw~~~p   93 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSE-----HAAGVECWGGP---------SKAKLVRF-RH-PDVKYLDFSPNEKY-LVTWSREP   93 (561)
T ss_pred             cCcchhheeecCcchheehh-----hccceEEcccc---------chhheeee-ec-CCceecccCcccce-eeeeccCC
Confidence            45678899999999999884     55679999976         44444445 23 45899999999995 333232  


Q ss_pred             -------------CCeEEEEEcCCCCCCceeeecccCCCceeeE-EEEeCCCCCcEEEEecCCeEEEEEccCCC----cc
Q 019059          142 -------------EENIFLWSLDCSNKNAQVQSKQSSGMLHYLS-GGAWDPHDVNAVAATCESSVQFWDLRSMG----KT  203 (346)
Q Consensus       142 -------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~i~d~~~~~----~~  203 (346)
                                   ++.+.+||+.++............   .... -+.|+-++.+++-. -...++|+++ ++.    +.
T Consensus        94 i~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~---~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~  168 (561)
T COG5354          94 IIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQP---YLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPF  168 (561)
T ss_pred             ccChhhccCCccccCceeEEeccCceeEeeccccCCc---ccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCch
Confidence                         235899999876533332222111   0122 56788877776644 3456999997 332    22


Q ss_pred             ceeeccceeEEEeCCCCCc-EEEE-----ecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecC----
Q 019059          204 NSIEHAHVRNVDYDTKKKH-LLVT-----AADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGT----  273 (346)
Q Consensus       204 ~~~~~~~v~~~~~~~~~~~-~l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~----  273 (346)
                      ..+...++...+|+|.++. .|+.     .+..+++++|.+.. +..+.+..-....-..+.|.+.| .+|+.--.    
T Consensus       169 ~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~-~s~l~tk~lfk~~~~qLkW~~~g-~~ll~l~~t~~k  246 (561)
T COG5354         169 KNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPK-NSVLVTKNLFKVSGVQLKWQVLG-KYLLVLVMTHTK  246 (561)
T ss_pred             hhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccC-CCeeeeeeeEeecccEEEEecCC-ceEEEEEEEeee
Confidence            3333333999999998542 2332     45678899999885 44444333233344567899999 65544211    


Q ss_pred             -------CCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEe--ecCCeEEEeee
Q 019059          274 -------DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASL--SYDGRVRNHML  344 (346)
Q Consensus       274 -------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~--~~d~~v~vw~~  344 (346)
                             ...+.|++++.                    .-+.....-.++|.++.|.|.++ .+++.  -.+..+.++++
T Consensus       247 snKsyfgesnLyl~~~~e--------------------~~i~V~~~~~~pVhdf~W~p~S~-~F~vi~g~~pa~~s~~~l  305 (561)
T COG5354         247 SNKSYFGESNLYLLRITE--------------------RSIPVEKDLKDPVHDFTWEPLSS-RFAVISGYMPASVSVFDL  305 (561)
T ss_pred             cccceeccceEEEEeecc--------------------cccceeccccccceeeeecccCC-ceeEEecccccceeeccc
Confidence                   24577777774                    22222225577899999999887 34433  46777777776


Q ss_pred             c
Q 019059          345 E  345 (346)
Q Consensus       345 ~  345 (346)
                      .
T Consensus       306 r  306 (561)
T COG5354         306 R  306 (561)
T ss_pred             c
Confidence            5

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.88  E-value=3.7e-06  Score=68.01  Aligned_cols=225  Identities=14%  Similarity=0.097  Sum_probs=136.8

Q ss_pred             cceEEeeecCCCCceEEEEeecCCcc-eEEEEecCcccCCCCCccceeeeeeeccCCceE--EEEeecCCCCcEEEE-e-
Q 019059           66 NEIWDLSSCPFDQRIFSTVFSTGESY-GAAIWQIPELYGQLNSPQLERIAALDAHVGKIN--CVLWWSSGRHDKLVS-I-  140 (346)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~d~-~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~-~-  140 (346)
                      .....++.+|.....++.+   -..| ...+||..         .++....+....+.-+  .-.|++||+. ++++ . 
T Consensus         5 ~RgH~~a~~p~~~~avafa---RRPG~~~~v~D~~---------~g~~~~~~~a~~gRHFyGHg~fs~dG~~-LytTEnd   71 (305)
T PF07433_consen    5 ARGHGVAAHPTRPEAVAFA---RRPGTFALVFDCR---------TGQLLQRLWAPPGRHFYGHGVFSPDGRL-LYTTEND   71 (305)
T ss_pred             ccccceeeCCCCCeEEEEE---eCCCcEEEEEEcC---------CCceeeEEcCCCCCEEecCEEEcCCCCE-EEEeccc
Confidence            4456778888666666553   2333 56788887         5555555544333322  3579999996 5555 2 


Q ss_pred             ---cCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec------------------CCeEEEEEccC
Q 019059          141 ---DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC------------------ESSVQFWDLRS  199 (346)
Q Consensus       141 ---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------d~~i~i~d~~~  199 (346)
                         ..|.|-|||...+  ..++...  ..+--....+.+.||++.|+++-.                  +.+|...|..+
T Consensus        72 ~~~g~G~IgVyd~~~~--~~ri~E~--~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~s  147 (305)
T PF07433_consen   72 YETGRGVIGVYDAARG--YRRIGEF--PSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARS  147 (305)
T ss_pred             cCCCcEEEEEEECcCC--cEEEeEe--cCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCC
Confidence               2589999999832  1222111  112224466789999987776632                  13466677788


Q ss_pred             CCccceeec--c-c---eeEEEeCCCCCcEEEEecCCC-------eEEEEEcccCCcceeee-------cCCCcceEEEE
Q 019059          200 MGKTNSIEH--A-H---VRNVDYDTKKKHLLVTAADES-------GIHLWDLRMLKAPIQEL-------PGHTHWTWAVC  259 (346)
Q Consensus       200 ~~~~~~~~~--~-~---v~~~~~~~~~~~~l~~~~~dg-------~i~i~d~~~~~~~~~~~-------~~~~~~v~~v~  259 (346)
                      ++.+.+...  . |   ++.+++.++|. .++..-..|       -|-+++...   .+..+       ..-.+.+-+|+
T Consensus       148 G~ll~q~~Lp~~~~~lSiRHLa~~~~G~-V~~a~Q~qg~~~~~~PLva~~~~g~---~~~~~~~p~~~~~~l~~Y~gSIa  223 (305)
T PF07433_consen  148 GALLEQVELPPDLHQLSIRHLAVDGDGT-VAFAMQYQGDPGDAPPLVALHRRGG---ALRLLPAPEEQWRRLNGYIGSIA  223 (305)
T ss_pred             CceeeeeecCccccccceeeEEecCCCc-EEEEEecCCCCCccCCeEEEEcCCC---cceeccCChHHHHhhCCceEEEE
Confidence            887666432  2 2   99999999996 444333222       233333222   22222       22346789999


Q ss_pred             eCCCCCcEE-EEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeec
Q 019059          260 CNPEYDGFI-LSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSY  335 (346)
Q Consensus       260 ~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  335 (346)
                      +++++ .++ +|+-.-+.+.+||..+                   +..+....-..  +..++-.+++  ++++.+.
T Consensus       224 ~~~~g-~~ia~tsPrGg~~~~~d~~t-------------------g~~~~~~~l~D--~cGva~~~~~--f~~ssG~  276 (305)
T PF07433_consen  224 ADRDG-RLIAVTSPRGGRVAVWDAAT-------------------GRLLGSVPLPD--ACGVAPTDDG--FLVSSGQ  276 (305)
T ss_pred             EeCCC-CEEEEECCCCCEEEEEECCC-------------------CCEeeccccCc--eeeeeecCCc--eEEeCCC
Confidence            99999 555 5555678999999998                   77766554333  5677777665  5555554

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.87  E-value=2.6e-06  Score=73.78  Aligned_cols=212  Identities=10%  Similarity=0.031  Sum_probs=121.4

Q ss_pred             CCcceEEEEecCcccCCCCCccceeeeeeeccCCce-----EEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeec
Q 019059           88 GESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKI-----NCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK  162 (346)
Q Consensus        88 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~  162 (346)
                      ..++.+..+|.+         +++.+-.+......+     .+... .++  .++++..++.+..+|+.+++........
T Consensus       152 ~~~g~l~a~d~~---------tG~~~W~~~~~~~~~~~~~~~sp~~-~~~--~v~~~~~~g~v~ald~~tG~~~W~~~~~  219 (377)
T TIGR03300       152 TNDGRLTALDAA---------TGERLWTYSRVTPALTLRGSASPVI-ADG--GVLVGFAGGKLVALDLQTGQPLWEQRVA  219 (377)
T ss_pred             CCCCeEEEEEcC---------CCceeeEEccCCCceeecCCCCCEE-ECC--EEEEECCCCEEEEEEccCCCEeeeeccc
Confidence            467889999987         444433332221111     11111 123  3666666889999999877654432211


Q ss_pred             ccCCCc--ee---e-EEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccceeEEEeCCCCCcEEEEecCCCeEEEE
Q 019059          163 QSSGML--HY---L-SGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLW  236 (346)
Q Consensus       163 ~~~~~~--~~---v-~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~  236 (346)
                      ...+..  ..   + ....+  .+..+++++.++.++.+|.++++............+..  .+. .+++++.+|.+..+
T Consensus       220 ~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~~--~~~-~vyv~~~~G~l~~~  294 (377)
T TIGR03300       220 LPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRDASSYQGPAV--DDN-RLYVTDADGVVVAL  294 (377)
T ss_pred             cCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeeccCCccCceE--eCC-EEEEECCCCeEEEE
Confidence            100000  00   0 01111  24578888889999999999988665444222222222  344 56777889999999


Q ss_pred             EcccCCcceeeecCCC-cceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccc
Q 019059          237 DLRMLKAPIQELPGHT-HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYED  315 (346)
Q Consensus       237 d~~~~~~~~~~~~~~~-~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (346)
                      |..+ ++.+-...... ....+...  .+ ..|++++.+|.|+++|..+                   ++.+..+..+..
T Consensus       295 d~~t-G~~~W~~~~~~~~~~ssp~i--~g-~~l~~~~~~G~l~~~d~~t-------------------G~~~~~~~~~~~  351 (377)
T TIGR03300       295 DRRS-GSELWKNDELKYRQLTAPAV--VG-GYLVVGDFEGYLHWLSRED-------------------GSFVARLKTDGS  351 (377)
T ss_pred             ECCC-CcEEEccccccCCccccCEE--EC-CEEEEEeCCCEEEEEECCC-------------------CCEEEEEEcCCC
Confidence            9986 33343332111 11222222  34 6788899999999999988                   777777665553


Q ss_pred             eee-EEEeCCCCCcEEEEeecCCeEEEe
Q 019059          316 SVY-GLAWSSREPWIFASLSYDGRVRNH  342 (346)
Q Consensus       316 ~v~-~~~~~~~~~~~l~s~~~d~~v~vw  342 (346)
                      .+. +..+. ++  .|..++.||.|+.+
T Consensus       352 ~~~~sp~~~-~~--~l~v~~~dG~l~~~  376 (377)
T TIGR03300       352 GIASPPVVV-GD--GLLVQTRDGDLYAF  376 (377)
T ss_pred             ccccCCEEE-CC--EEEEEeCCceEEEe
Confidence            322 22332 33  36678889988765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.87  E-value=4.6e-09  Score=58.15  Aligned_cols=38  Identities=26%  Similarity=0.408  Sum_probs=35.4

Q ss_pred             ccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEee
Q 019059          305 SLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHM  343 (346)
Q Consensus       305 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~  343 (346)
                      +++.++.+|.+.|++++|+|++. +|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence            56788999999999999999986 999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.87  E-value=4.6e-07  Score=80.13  Aligned_cols=238  Identities=12%  Similarity=0.071  Sum_probs=159.1

Q ss_pred             cceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCC----------CCc
Q 019059           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSG----------RHD  135 (346)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----------~~~  135 (346)
                      ..-.++.|+|.| .++.+     ....|.|-|..         +.+.++.+..|...|+.+.|.|-.          .++
T Consensus        16 sN~~A~Dw~~~G-LiAyg-----shslV~VVDs~---------s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~l   80 (1062)
T KOG1912|consen   16 SNRNAADWSPSG-LIAYG-----SHSLVSVVDSR---------SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQL   80 (1062)
T ss_pred             ccccccccCccc-eEEEe-----cCceEEEEehh---------hhhhhhccccCccceeEEEeccCCCchhccCccccce
Confidence            345678999966 44442     44578888877         789999999999999999998631          344


Q ss_pred             EEEEe-cCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCC---CC-CcEEEEecCCeEEEEEccCCCccceeeccc
Q 019059          136 KLVSI-DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDP---HD-VNAVAATCESSVQFWDLRSMGKTNSIEHAH  210 (346)
Q Consensus       136 ~~~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~  210 (346)
                      +++++ ..|.|.+||.........+..     +..++..++|-+   +. ..|++......|.+|+..+|+.......++
T Consensus        81 liAsaD~~GrIil~d~~~~s~~~~l~~-----~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~  155 (1062)
T KOG1912|consen   81 LIASADISGRIILVDFVLASVINWLSH-----SNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSH  155 (1062)
T ss_pred             eEEeccccCcEEEEEehhhhhhhhhcC-----CCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCC
Confidence            55654 379999999986654433332     344677777754   34 346666778899999999999887777666


Q ss_pred             --eeEEEeCCCCCcEEEEecCCCeEEEEEcccCC---cceeeec---CCCc----------------c---------eEE
Q 019059          211 --VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK---APIQELP---GHTH----------------W---------TWA  257 (346)
Q Consensus       211 --v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~---~~~~----------------~---------v~~  257 (346)
                        ..|+.++|.+...+..-+..|.+-+.+.-...   .+.+.++   .|..                .         ...
T Consensus       156 ~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~  235 (1062)
T KOG1912|consen  156 EILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQ  235 (1062)
T ss_pred             cceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHh
Confidence              67799999776555555566777666543211   1222221   1111                0         123


Q ss_pred             EEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCC-cEEEEeecC
Q 019059          258 VCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREP-WIFASLSYD  336 (346)
Q Consensus       258 v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~s~~~d  336 (346)
                      ++|+|.- +-++-......+.|+|++.                   ..++.+..-.++.+.-+.|-|+.+ ..|...-.|
T Consensus       236 faf~p~~-rn~lfi~~prellv~dle~-------------------~~~l~vvpier~~akfv~vlP~~~rd~LfclH~n  295 (1062)
T KOG1912|consen  236 FAFSPHW-RNILFITFPRELLVFDLEY-------------------ECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSN  295 (1062)
T ss_pred             hhcChhh-hceEEEEeccceEEEcchh-------------------hceeEEEEeccCCcceeEeccCCCcceEEEEecC
Confidence            5567766 3333344456799999997                   667776666666666678877654 257777889


Q ss_pred             CeEEEee
Q 019059          337 GRVRNHM  343 (346)
Q Consensus       337 ~~v~vw~  343 (346)
                      |.+.+|-
T Consensus       296 G~ltirv  302 (1062)
T KOG1912|consen  296 GRLTIRV  302 (1062)
T ss_pred             CeEEEEE
Confidence            9999884

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.87  E-value=1.2e-05  Score=67.49  Aligned_cols=192  Identities=8%  Similarity=0.032  Sum_probs=126.4

Q ss_pred             EeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeec-cc---CCCceeeEE---E-EeCC-CCCcEEEEecCCeEEEEEc
Q 019059          127 LWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK-QS---SGMLHYLSG---G-AWDP-HDVNAVAATCESSVQFWDL  197 (346)
Q Consensus       127 ~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~-~~---~~~~~~v~~---~-~~~~-~~~~l~~~~~d~~i~i~d~  197 (346)
                      ..+.||+.+++.  ..|.|.+||.++... .++... ..   ......+.-   + .|++ +|.+++..+ .|...+.+.
T Consensus       273 ~~nsDGkrIvFq--~~GdIylydP~td~l-ekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~  348 (668)
T COG4946         273 NANSDGKRIVFQ--NAGDIYLYDPETDSL-EKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRP  348 (668)
T ss_pred             ccCCCCcEEEEe--cCCcEEEeCCCcCcc-eeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECC
Confidence            346788863333  468999999886542 222221 10   000001111   1 1332 466666665 566777665


Q ss_pred             cCCCccceeeccceeEEEeCCCCCcEEEEecCCC-eEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCe
Q 019059          198 RSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADES-GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDST  276 (346)
Q Consensus       198 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~  276 (346)
                      ..+-.+..-..+.|.-..+..+++ -++.|..|| .+-++|.+. . .+..+...-+.|.++..+|+| .+++.+.....
T Consensus       349 ~~~~~iqv~~~~~VrY~r~~~~~e-~~vigt~dgD~l~iyd~~~-~-e~kr~e~~lg~I~av~vs~dG-K~~vvaNdr~e  424 (668)
T COG4946         349 WDGYSIQVGKKGGVRYRRIQVDPE-GDVIGTNDGDKLGIYDKDG-G-EVKRIEKDLGNIEAVKVSPDG-KKVVVANDRFE  424 (668)
T ss_pred             CCCeeEEcCCCCceEEEEEccCCc-ceEEeccCCceEEEEecCC-c-eEEEeeCCccceEEEEEcCCC-cEEEEEcCceE
Confidence            544433222222277777776766 678888888 899999985 3 466777778899999999999 99999998889


Q ss_pred             EEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCC----eEEEeeecC
Q 019059          277 VNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDG----RVRNHMLEK  346 (346)
Q Consensus       277 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~----~v~vw~~~~  346 (346)
                      |.+.|+.+                   +.....-+...+-|+.++|+|+++ .+|-+--+|    .|+++|+++
T Consensus       425 l~vididn-------------------gnv~~idkS~~~lItdf~~~~nsr-~iAYafP~gy~tq~Iklydm~~  478 (668)
T COG4946         425 LWVIDIDN-------------------GNVRLIDKSEYGLITDFDWHPNSR-WIAYAFPEGYYTQSIKLYDMDG  478 (668)
T ss_pred             EEEEEecC-------------------CCeeEecccccceeEEEEEcCCce-eEEEecCcceeeeeEEEEecCC
Confidence            99999998                   555444455667899999999997 677655444    588888764

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.85  E-value=8.6e-09  Score=57.02  Aligned_cols=38  Identities=21%  Similarity=0.492  Sum_probs=35.7

Q ss_pred             cceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEe
Q 019059          243 APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWL  281 (346)
Q Consensus       243 ~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd  281 (346)
                      +++.++.+|...|++++|+|++ .+|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence            3678899999999999999999 9999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.83  E-value=2.4e-06  Score=69.21  Aligned_cols=195  Identities=13%  Similarity=0.108  Sum_probs=118.7

Q ss_pred             EEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeC-CCCCcEEEEecCCeEEEEEccCCCcc
Q 019059          125 CVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWD-PHDVNAVAATCESSVQFWDLRSMGKT  203 (346)
Q Consensus       125 ~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~  203 (346)
                      ++.|.+....++++....+.|..|+..++..  ......      ...++++. ++ ..++++... .+.++|+.+++..
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~--~~~~~~------~~~G~~~~~~~-g~l~v~~~~-~~~~~d~~~g~~~   73 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV--EVIDLP------GPNGMAFDRPD-GRLYVADSG-GIAVVDPDTGKVT   73 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEE--EEEESS------SEEEEEEECTT-SEEEEEETT-CEEEEETTTTEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeE--EEEecC------CCceEEEEccC-CEEEEEEcC-ceEEEecCCCcEE
Confidence            5788884444555555689999999886532  221111      26677777 55 555555544 4566698887543


Q ss_pred             ceeec---c--c--eeEEEeCCCCCcEEEEecCC--------CeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEE
Q 019059          204 NSIEH---A--H--VRNVDYDTKKKHLLVTAADE--------SGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFI  268 (346)
Q Consensus       204 ~~~~~---~--~--v~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l  268 (346)
                      .....   .  .  ++.+++.|+|. +.++....        |.|..++..  . .+..+...-...+.|+|+|++..++
T Consensus        74 ~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~--~-~~~~~~~~~~~pNGi~~s~dg~~ly  149 (246)
T PF08450_consen   74 VLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD--G-KVTVVADGLGFPNGIAFSPDGKTLY  149 (246)
T ss_dssp             EEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT--S-EEEEEEEEESSEEEEEEETTSSEEE
T ss_pred             EEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC--C-eEEEEecCcccccceEECCcchhee
Confidence            33322   1  2  99999999998 77765533        456666655  2 2333333345678999999993344


Q ss_pred             EEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeecC
Q 019059          269 LSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLEK  346 (346)
Q Consensus       269 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~~  346 (346)
                      ++-+..+.|..+++.......            ...+....+....+..-.+++.++|. +.++.-..+.|.+++.++
T Consensus       150 v~ds~~~~i~~~~~~~~~~~~------------~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~G  214 (246)
T PF08450_consen  150 VADSFNGRIWRFDLDADGGEL------------SNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPDG  214 (246)
T ss_dssp             EEETTTTEEEEEEEETTTCCE------------EEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETTS
T ss_pred             ecccccceeEEEeccccccce------------eeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEcCCCEEEEECCCc
Confidence            567778899999987411000            00112222333333478899999996 777777788899988653

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.82  E-value=2.9e-09  Score=91.62  Aligned_cols=200  Identities=19%  Similarity=0.299  Sum_probs=131.4

Q ss_pred             CceEEEEeecCCC-CcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCc-EEEEe----cCCeEEE
Q 019059          121 GKINCVLWWSSGR-HDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVN-AVAAT----CESSVQF  194 (346)
Q Consensus       121 ~~i~~~~~~~~~~-~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~----~d~~i~i  194 (346)
                      ..+.|+++.-+.. .++.+|..+|.|.+-.++.........   .+++...+++++|++-+.. |++|-    .|..+.|
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~---tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~I  133 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEV---TPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKI  133 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCccccccee---cccccccccccccccccHHHHHhhhhhhcccCCccc
Confidence            3466777665544 456666668999998887544331111   2345668999999986544 55543    2678999


Q ss_pred             EEccCC--Ccc--ceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcE
Q 019059          195 WDLRSM--GKT--NSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGF  267 (346)
Q Consensus       195 ~d~~~~--~~~--~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~  267 (346)
                      ||+.++  .+.  ..+..+.   ..+++|..+.+ ++.+|.....++++|+|........+  .+..+..+..+|-.+.+
T Consensus       134 wdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~k-lvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY  210 (783)
T KOG1008|consen  134 WDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK-LVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNY  210 (783)
T ss_pred             eecccccCCCccccccccccccCccccccccCcc-hhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCc
Confidence            999977  222  1222212   78899998877 89999999999999999533222222  34566777788854478


Q ss_pred             EEEecCCCeEEEEec-CCCCCCCCCcccccCCcccccccccccccccc----ceeeEEEeCCCCCcEEEEeec-CCeEEE
Q 019059          268 ILSAGTDSTVNLWLV-STSNHDELPSESLVESPNQRANSLLNSYSDYE----DSVYGLAWSSREPWIFASLSY-DGRVRN  341 (346)
Q Consensus       268 l~s~~~d~~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~l~s~~~-d~~v~v  341 (346)
                      +++-. |+.|.+||. +.                  -..++..+....    ..+..++|.|....++++... .++|++
T Consensus       211 ~cs~~-dg~iAiwD~~rn------------------ienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrl  271 (783)
T KOG1008|consen  211 FCSNS-DGDIAIWDTYRN------------------IENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRL  271 (783)
T ss_pred             eeccc-cCceeeccchhh------------------hccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEE
Confidence            88777 899999994 33                  123333332222    248899999976667777775 467888


Q ss_pred             eeec
Q 019059          342 HMLE  345 (346)
Q Consensus       342 w~~~  345 (346)
                      +++.
T Consensus       272 ydi~  275 (783)
T KOG1008|consen  272 YDIC  275 (783)
T ss_pred             eccc
Confidence            8763

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.78  E-value=2.6e-06  Score=76.41  Aligned_cols=196  Identities=11%  Similarity=0.074  Sum_probs=125.6

Q ss_pred             eecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCC-----eEE
Q 019059           72 SSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEE-----NIF  146 (346)
Q Consensus        72 ~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~-----~i~  146 (346)
                      +|++.+..++.+    ..+|.|.+.+-          ..+.++.++.+...|...-|.-+++.++++-++|+     .++
T Consensus        30 c~~s~~~~vvig----t~~G~V~~Ln~----------s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llk   95 (933)
T KOG2114|consen   30 CCSSSTGSVVIG----TADGRVVILNS----------SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLK   95 (933)
T ss_pred             EEcCCCceEEEe----eccccEEEecc----------cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEE
Confidence            356767777664    68887777664          35666788888777555555556654455445543     589


Q ss_pred             EEEcCCCCCCc--------eeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEcc----CCCccceeeccc--ee
Q 019059          147 LWSLDCSNKNA--------QVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLR----SMGKTNSIEHAH--VR  212 (346)
Q Consensus       147 vwd~~~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~----~~~~~~~~~~~~--v~  212 (346)
                      +|+++......        .......+-...++..++.+.+-..+++|-.+|.|..+.-.    .+....-...+.  |+
T Consensus        96 iw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pIT  175 (933)
T KOG2114|consen   96 IWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPIT  175 (933)
T ss_pred             EecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCce
Confidence            99998642222        11111122234578888999888888999899999887422    111111111222  99


Q ss_pred             EEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          213 NVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       213 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      .+++..++...++++. -..|.+|.+.........+..|...++|..+++.. ..|++++. ..+.+|+...
T Consensus       176 gL~~~~d~~s~lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t-~qfIca~~-e~l~fY~sd~  244 (933)
T KOG2114|consen  176 GLALRSDGKSVLFVAT-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGT-YQFICAGS-EFLYFYDSDG  244 (933)
T ss_pred             eeEEecCCceeEEEEe-cceeEEEEecCCCcceeeeccCCccceeeecCCCC-ccEEEecC-ceEEEEcCCC
Confidence            9999998884334433 35899999985331244477788899999999877 44555543 4599999886

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.77  E-value=2.3e-06  Score=72.97  Aligned_cols=114  Identities=13%  Similarity=0.310  Sum_probs=78.4

Q ss_pred             eeeEEEEeCCCCCcEEEEec---CCeEEEEEccC-C---CccceeeccceeEEEeCCCCCcEEEE--ecCCCeEEEEEcc
Q 019059          169 HYLSGGAWDPHDVNAVAATC---ESSVQFWDLRS-M---GKTNSIEHAHVRNVDYDTKKKHLLVT--AADESGIHLWDLR  239 (346)
Q Consensus       169 ~~v~~~~~~~~~~~l~~~~~---d~~i~i~d~~~-~---~~~~~~~~~~v~~~~~~~~~~~~l~~--~~~dg~i~i~d~~  239 (346)
                      ..+...+|-|.|..+++.+.   ..++.+|-+++ .   +.+..+...+.+.+.|+|.|+++++.  ++..|.+..+|+.
T Consensus       446 e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~  525 (698)
T KOG2314|consen  446 ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTD  525 (698)
T ss_pred             hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecc
Confidence            36788899999988776653   46899998883 2   23444443339999999999944433  2457899999987


Q ss_pred             cCCcceeeecCCCcceEEEEeCCCCCcEEEEecC------CCeEEEEecCC
Q 019059          240 MLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGT------DSTVNLWLVST  284 (346)
Q Consensus       240 ~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~------d~~i~iwd~~~  284 (346)
                      ...........| ...+.+.|.|.| +|+++++.      |.--+||+++.
T Consensus       526 ~a~~k~~~~~eh-~~at~veWDPtG-RYvvT~ss~wrhk~d~GYri~tfqG  574 (698)
T KOG2314|consen  526 YADLKDTASPEH-FAATEVEWDPTG-RYVVTSSSSWRHKVDNGYRIFTFQG  574 (698)
T ss_pred             hhhhhhccCccc-cccccceECCCC-CEEEEeeehhhhccccceEEEEeec
Confidence            422111112223 345789999999 99999875      45577888764

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.76  E-value=1.3e-06  Score=75.55  Aligned_cols=166  Identities=10%  Similarity=0.134  Sum_probs=108.4

Q ss_pred             eeeeeeeccCCceEEEEeecCCCCcEEEEec--C-CeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEe
Q 019059          111 ERIAALDAHVGKINCVLWWSSGRHDKLVSID--E-ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT  187 (346)
Q Consensus       111 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  187 (346)
                      .....+......+..-+|+|++..+....-.  . ..+.+++++++..........      .-...+|+|||+.++...
T Consensus       183 ~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g------~~~~P~fspDG~~l~f~~  256 (425)
T COG0823         183 YNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNG------NNGAPAFSPDGSKLAFSS  256 (425)
T ss_pred             cceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCC------ccCCccCCCCCCEEEEEE
Confidence            3444454556677888999999987666632  2 369999999877554443221      344568999999988776


Q ss_pred             c-CC--eEEEEEccCCCccceeeccc--eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCC
Q 019059          188 C-ES--SVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNP  262 (346)
Q Consensus       188 ~-d~--~i~i~d~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~  262 (346)
                      . |+  .|+++|+..+...+ +....  -..-.|+|+|++++++.+..|.-.||-..........+......-....|+|
T Consensus       257 ~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~Sp  335 (425)
T COG0823         257 SRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSP  335 (425)
T ss_pred             CCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCC
Confidence            4 44  57778888777433 44333  4578999999988888888886555544433333444444343334778999


Q ss_pred             CCCcEEEEecC-CCe--EEEEecCC
Q 019059          263 EYDGFILSAGT-DST--VNLWLVST  284 (346)
Q Consensus       263 ~~~~~l~s~~~-d~~--i~iwd~~~  284 (346)
                      +| .+|+..+. +|.  |.+.|+.+
T Consensus       336 dG-~~i~~~~~~~g~~~i~~~~~~~  359 (425)
T COG0823         336 DG-DKIVFESSSGGQWDIDKNDLAS  359 (425)
T ss_pred             CC-CEEEEEeccCCceeeEEeccCC
Confidence            99 66665553 344  66666655

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.74  E-value=1.4e-06  Score=77.26  Aligned_cols=221  Identities=12%  Similarity=0.113  Sum_probs=145.2

Q ss_pred             CeEEEEEecCCCCeEEEeeeeccccceEEeeecCC-----------CCceEEEEeecCCcceEEEEecCcccCCCCCccc
Q 019059           42 NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPF-----------DQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQL  110 (346)
Q Consensus        42 ~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----------~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~  110 (346)
                      +.|.+++.-.-   .....+.-|+..|+.+.|.|.           ...+++.   +.-.|.|.+||..         ..
T Consensus        35 slV~VVDs~s~---q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAs---aD~~GrIil~d~~---------~~   99 (1062)
T KOG1912|consen   35 SLVSVVDSRSL---QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIAS---ADISGRIILVDFV---------LA   99 (1062)
T ss_pred             ceEEEEehhhh---hhhhccccCccceeEEEeccCCCchhccCccccceeEEe---ccccCcEEEEEeh---------hh
Confidence            34555543332   233556678899999999873           1233343   4677999999997         55


Q ss_pred             eeeeeeeccCCceEEEEeec---CCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCC-CCCcEEEE
Q 019059          111 ERIAALDAHVGKINCVLWWS---SGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDP-HDVNAVAA  186 (346)
Q Consensus       111 ~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~  186 (346)
                      ..+..+..|..++..++|-+   +.++++++-.....+.+|+..+++...+.....     ....++.+.| |.+++..-
T Consensus       100 s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~-----~iLs~f~~DPfd~rh~~~l  174 (1062)
T KOG1912|consen  100 SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSH-----EILSCFRVDPFDSRHFCVL  174 (1062)
T ss_pred             hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCC-----cceeeeeeCCCCcceEEEE
Confidence            66667878889999999965   344555555567899999999888666554322     2566688888 44556666


Q ss_pred             ecCCeEEEEEccCCCc----c--ceeecc----------------------c------eeEEEeCCCCCcEEEEecCCCe
Q 019059          187 TCESSVQFWDLRSMGK----T--NSIEHA----------------------H------VRNVDYDTKKKHLLVTAADESG  232 (346)
Q Consensus       187 ~~d~~i~i~d~~~~~~----~--~~~~~~----------------------~------v~~~~~~~~~~~~l~~~~~dg~  232 (346)
                      +..|.+.+.+.-..+.    .  ..+...                      .      ...++|+|.-++.++.. ....
T Consensus       175 ~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~-~pre  253 (1062)
T KOG1912|consen  175 GSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFIT-FPRE  253 (1062)
T ss_pred             ccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEE-eccc
Confidence            6677776665432110    0  111101                      0      33467788766555544 3467


Q ss_pred             EEEEEcccCCcceeeecCCCcceEEEEeCCCCC-cEEEEecCCCeEEEEecCC
Q 019059          233 IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYD-GFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       233 i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~-~~l~s~~~d~~i~iwd~~~  284 (346)
                      +.++|++- ..++.......+.+.-+.+-|++. ..|++.-.||.+.+|-.+.
T Consensus       254 llv~dle~-~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  254 LLVFDLEY-ECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             eEEEcchh-hceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence            99999986 556766665566666677777662 5788999999999997765

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.73  E-value=1.3e-05  Score=74.82  Aligned_cols=201  Identities=10%  Similarity=0.101  Sum_probs=121.3

Q ss_pred             cceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeE
Q 019059           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENI  145 (346)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i  145 (346)
                      +.|.++.|..+...++.+.    ..|.|.+-|.+         + ..+.....-...|.+++|+||+..+.++++ .+++
T Consensus        69 ~~i~s~~fl~d~~~i~v~~----~~G~iilvd~e---------t-~~~eivg~vd~GI~aaswS~Dee~l~liT~-~~tl  133 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVIT----ALGDIILVDPE---------T-LELEIVGNVDNGISAASWSPDEELLALITG-RQTL  133 (1265)
T ss_pred             cceEEEEEecccceEEEEe----cCCcEEEEccc---------c-cceeeeeeccCceEEEeecCCCcEEEEEeC-CcEE
Confidence            5899999998888777763    66777777765         2 222233334678999999999996555554 4555


Q ss_pred             EEEEc----CCCCCC-------ceee----------ecccC---------------C---CceeeEEEEeCCCCCcEEEE
Q 019059          146 FLWSL----DCSNKN-------AQVQ----------SKQSS---------------G---MLHYLSGGAWDPHDVNAVAA  186 (346)
Q Consensus       146 ~vwd~----~~~~~~-------~~~~----------~~~~~---------------~---~~~~v~~~~~~~~~~~l~~~  186 (346)
                      .+-+-    -..+..       .+..          .....               +   ....=..+.|--||+++++.
T Consensus       134 l~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs  213 (1265)
T KOG1920|consen  134 LFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVS  213 (1265)
T ss_pred             EEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEE
Confidence            44321    111100       0000          00000               0   11122458999999988875


Q ss_pred             e----cC-CeEEEEEccCCCccceeec-cc-eeEEEeCCCCCcEEEEec---CCCeEEEEEcccCC--cceeeecCCCcc
Q 019059          187 T----CE-SSVQFWDLRSMGKTNSIEH-AH-VRNVDYDTKKKHLLVTAA---DESGIHLWDLRMLK--APIQELPGHTHW  254 (346)
Q Consensus       187 ~----~d-~~i~i~d~~~~~~~~~~~~-~~-v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~--~~~~~~~~~~~~  254 (346)
                      .    .+ ..|++||.+ +..-..-.+ .. -.+++|-|.|. ++++-.   .|+.|.+|.-.-..  .-...+.....+
T Consensus       214 ~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs-~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~  291 (1265)
T KOG1920|consen  214 FVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGS-LIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKE  291 (1265)
T ss_pred             EEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCC-eEeeeeecCCCCcEEEEecCCccccccccCCcccccc
Confidence            4    24 799999988 432222111 11 67899999998 777643   44578888743211  111122233345


Q ss_pred             eEEEEeCCCCCcEEEE---ecCCCeEEEEecCC
Q 019059          255 TWAVCCNPEYDGFILS---AGTDSTVNLWLVST  284 (346)
Q Consensus       255 v~~v~~~~~~~~~l~s---~~~d~~i~iwd~~~  284 (346)
                      +..++|+.++ ..||+   ......|++|-+..
T Consensus       292 ve~L~Wns~s-diLAv~~~~~e~~~v~lwt~~N  323 (1265)
T KOG1920|consen  292 VEELAWNSNS-DILAVVTSNLENSLVQLWTTGN  323 (1265)
T ss_pred             hheeeecCCC-CceeeeecccccceEEEEEecC
Confidence            8999999999 88887   44555699998875

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.70  E-value=2e-06  Score=74.38  Aligned_cols=200  Identities=15%  Similarity=0.164  Sum_probs=118.6

Q ss_pred             eeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEec
Q 019059           19 ISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQI   98 (346)
Q Consensus        19 ~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~   98 (346)
                      +..-.+.++..+++.-++.......++++++..........    ..+.-...+|+|+|+.|+.+.   ..|+...||-+
T Consensus       195 ~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~----~~g~~~~P~fspDG~~l~f~~---~rdg~~~iy~~  267 (425)
T COG0823         195 ILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN----FNGNNGAPAFSPDGSKLAFSS---SRDGSPDIYLM  267 (425)
T ss_pred             eeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec----cCCccCCccCCCCCCEEEEEE---CCCCCccEEEE
Confidence            33345677788877776655444578888888765444322    334445679999999998874   55666555544


Q ss_pred             CcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCe--EEEEEcCCCCCCceeeecccCCCceeeEEEEe
Q 019059           99 PELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEEN--IFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAW  176 (346)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~--i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~  176 (346)
                      +.        ..+.+..+....+.-..-.|+|||+++++++...|.  |.+++++.... ..+.. ...    .-..-.|
T Consensus       268 dl--------~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~-~~~----~~~~p~~  333 (425)
T COG0823         268 DL--------DGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTF-SGG----GNSNPVW  333 (425)
T ss_pred             cC--------CCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeec-cCC----CCcCccC
Confidence            42        112233343333334467899999998888866555  55555554332 22222 111    1125689


Q ss_pred             CCCCCcEEEEec-CCe--EEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcc
Q 019059          177 DPHDVNAVAATC-ESS--VQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLR  239 (346)
Q Consensus       177 ~~~~~~l~~~~~-d~~--i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  239 (346)
                      +|+|+.++..+. +|.  |.+.|+.++...+.+.... .....|.+++..++...+.-+.=.++.+.
T Consensus       334 SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s  400 (425)
T COG0823         334 SPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQGGGSVLSLVS  400 (425)
T ss_pred             CCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccCCCCceEEEee
Confidence            999999888774 343  7777777666544444333 66778888888444444333333344333

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.70  E-value=4.5e-05  Score=60.83  Aligned_cols=203  Identities=12%  Similarity=0.169  Sum_probs=115.0

Q ss_pred             eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeecc-CCceEEEEeecCCCCcEE
Q 019059           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH-VGKINCVLWWSSGRHDKL  137 (346)
Q Consensus        59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~  137 (346)
                      +.+.+-...+.+++|.|+...|+++.   +..+.|...+.+          ++.++.+.-. .+..-.+++..++.  ++
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~tLfaV~---d~~~~i~els~~----------G~vlr~i~l~g~~D~EgI~y~g~~~--~v   79 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGTLFAVQ---DEPGEIYELSLD----------GKVLRRIPLDGFGDYEGITYLGNGR--YV   79 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTEEEEEE---TTTTEEEEEETT------------EEEEEE-SS-SSEEEEEE-STTE--EE
T ss_pred             eECCCccCCccccEEcCCCCeEEEEE---CCCCEEEEEcCC----------CCEEEEEeCCCCCCceeEEEECCCE--EE
Confidence            34445566799999999999898884   667777666653          5666665433 35678899987776  44


Q ss_pred             EE-ecCCeEEEEEcCCCCCCcee------eecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccC---CCccceee
Q 019059          138 VS-IDEENIFLWSLDCSNKNAQV------QSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRS---MGKTNSIE  207 (346)
Q Consensus       138 ~~-~~d~~i~vwd~~~~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~  207 (346)
                      .+ -.++.+.++++.........      ...........+.+++|+|.++.++++-...-..+|.++.   ........
T Consensus        80 l~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~  159 (248)
T PF06977_consen   80 LSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSD  159 (248)
T ss_dssp             EEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE
T ss_pred             EEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecc
Confidence            44 34899999998543322111      1111223445689999999988888887776666776654   21111111


Q ss_pred             -------ccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCC---------cceEEEEeCCCCCcEE
Q 019059          208 -------HAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHT---------HWTWAVCCNPEYDGFI  268 (346)
Q Consensus       208 -------~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------~~v~~v~~~~~~~~~l  268 (346)
                             ...   +.+++++|....+++....+..|..+|..  ++++..+.-..         ...-.|+|.++| .+.
T Consensus       160 ~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~--G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G-~LY  236 (248)
T PF06977_consen  160 DQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ--GRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDG-NLY  236 (248)
T ss_dssp             -HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT----EEEEEE-STTGGG-SS---SEEEEEE-TT---EE
T ss_pred             ccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCC--CCEEEEEEeCCcccCcccccCCccEEEECCCC-CEE
Confidence                   001   88999999988788888888999999944  44554443221         346789999998 544


Q ss_pred             EEecCCCeEEEE
Q 019059          269 LSAGTDSTVNLW  280 (346)
Q Consensus       269 ~s~~~d~~i~iw  280 (346)
                      + .++-+..++|
T Consensus       237 I-vsEpNlfy~f  247 (248)
T PF06977_consen  237 I-VSEPNLFYRF  247 (248)
T ss_dssp             E-EETTTEEEEE
T ss_pred             E-EcCCceEEEe
Confidence            4 4455555544

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.64  E-value=1.7e-05  Score=64.21  Aligned_cols=204  Identities=9%  Similarity=0.042  Sum_probs=121.7

Q ss_pred             ceEEEEeecCCCCcEEEEec-CCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec-----CCeEEEE
Q 019059          122 KINCVLWWSSGRHDKLVSID-EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-----ESSVQFW  195 (346)
Q Consensus       122 ~i~~~~~~~~~~~~~~~~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~i~  195 (346)
                      ....++.+|.....++.+-. .....+||..+++....+.... ..|  .--.-.|++||++|++.-+     .|.|-||
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~-gRH--FyGHg~fs~dG~~LytTEnd~~~g~G~IgVy   82 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPP-GRH--FYGHGVFSPDGRLLYTTENDYETGRGVIGVY   82 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCC-CCE--EecCEEEcCCCCEEEEeccccCCCcEEEEEE
Confidence            34567788866654444433 4577889998877655443322 111  2234579999999999864     4899999


Q ss_pred             Ecc-CCCccceeeccc--eeEEEeCCCCCcEEEEecC-------CC-----------eEEEEEcccCCcceee--e--cC
Q 019059          196 DLR-SMGKTNSIEHAH--VRNVDYDTKKKHLLVTAAD-------ES-----------GIHLWDLRMLKAPIQE--L--PG  250 (346)
Q Consensus       196 d~~-~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~-------dg-----------~i~i~d~~~~~~~~~~--~--~~  250 (346)
                      |.. +-+.+.++...-  ...+.+.|+++ .|+++..       .|           .+...|.++ +..+.+  +  ..
T Consensus        83 d~~~~~~ri~E~~s~GIGPHel~l~pDG~-tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~s-G~ll~q~~Lp~~~  160 (305)
T PF07433_consen   83 DAARGYRRIGEFPSHGIGPHELLLMPDGE-TLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARS-GALLEQVELPPDL  160 (305)
T ss_pred             ECcCCcEEEeEecCCCcChhhEEEcCCCC-EEEEEcCCCccCcccCceecChhhcCCceEEEecCC-CceeeeeecCccc
Confidence            999 445666665222  88889999997 4444321       12           233445554 334443  3  23


Q ss_pred             CCcceEEEEeCCCCCcEEEEecCCC-------eEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeC
Q 019059          251 HTHWTWAVCCNPEYDGFILSAGTDS-------TVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWS  323 (346)
Q Consensus       251 ~~~~v~~v~~~~~~~~~l~s~~~d~-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  323 (346)
                      |...|..+++.++| ..++..-..|       -|.+++.... ..             ....+......-.+.+-+|+++
T Consensus       161 ~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g~~-~~-------------~~~~p~~~~~~l~~Y~gSIa~~  225 (305)
T PF07433_consen  161 HQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRGGA-LR-------------LLPAPEEQWRRLNGYIGSIAAD  225 (305)
T ss_pred             cccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCCCc-ce-------------eccCChHHHHhhCCceEEEEEe
Confidence            67788888898888 5444432222       1333332220 00             0000000112234568899999


Q ss_pred             CCCCcEEEEeecCCeEEEeeec
Q 019059          324 SREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       324 ~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      +++..+.+|+-..+.+.+||..
T Consensus       226 ~~g~~ia~tsPrGg~~~~~d~~  247 (305)
T PF07433_consen  226 RDGRLIAVTSPRGGRVAVWDAA  247 (305)
T ss_pred             CCCCEEEEECCCCCEEEEEECC
Confidence            9998666777789999999864

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.62  E-value=1.1e-06  Score=79.10  Aligned_cols=182  Identities=13%  Similarity=0.142  Sum_probs=126.8

Q ss_pred             cEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc-eeE
Q 019059          135 DKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRN  213 (346)
Q Consensus       135 ~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-v~~  213 (346)
                      .++.|+....+..+|+++.+.........     ..+.-+..  +++.+++|...|+|.+-|.++.+.++++. .| -.-
T Consensus       149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a-----~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~-aHs~si  220 (1118)
T KOG1275|consen  149 TLIMGGLQEKLIHIDLNTEKETRTTNVSA-----SGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFD-AHSGSI  220 (1118)
T ss_pred             ceeecchhhheeeeecccceeeeeeeccC-----CceEEEEe--cCcEEEeecccceEEeecCCcCceeeeee-ccccce
Confidence            36677777788888998765433332211     12444443  56889999999999999999999999998 66 333


Q ss_pred             EEeCCCCCcEEEEecC---------CCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          214 VDYDTKKKHLLVTAAD---------ESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       214 ~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      .+|+-.|+ +|++++.         |..|+|||+|+.+ .+..+.-+.++ .-+.|.|.-...+++++..|+..+-|..+
T Consensus       221 SDfDv~GN-lLitCG~S~R~~~l~~D~FvkVYDLRmmr-al~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~  297 (1118)
T KOG1275|consen  221 SDFDVQGN-LLITCGYSMRRYNLAMDPFVKVYDLRMMR-ALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTAT  297 (1118)
T ss_pred             eeeeccCC-eEEEeecccccccccccchhhhhhhhhhh-ccCCcccccCc-hhhhhcccccceEEEEecccceeeccccc
Confidence            44555676 7777663         4568999999854 34334333333 56789998878899999999999999543


Q ss_pred             CCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEee
Q 019059          285 SNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHM  343 (346)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~  343 (346)
                      ....               ..-++.+......+..+++++++. .|+-+..+|.|.+|.
T Consensus       298 lsNP---------------~~~~~~v~p~~s~i~~fDiSsn~~-alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  298 LSNP---------------PAGVKMVNPNGSGISAFDISSNGD-ALAFGDHEGHVNLWA  340 (1118)
T ss_pred             cCCC---------------ccceeEEccCCCcceeEEecCCCc-eEEEecccCcEeeec
Confidence            1000               112223333445599999999998 899999999999995

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.62  E-value=8.5e-05  Score=64.41  Aligned_cols=223  Identities=10%  Similarity=-0.016  Sum_probs=121.6

Q ss_pred             CCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCC
Q 019059           76 FDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNK  155 (346)
Q Consensus        76 ~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~  155 (346)
                      ++..++++    +.++.+..+|.+         +++.+-..... ..+.+.-...++.  +++...++.+..+|.++++.
T Consensus       104 ~~~~v~v~----~~~g~l~ald~~---------tG~~~W~~~~~-~~~~~~p~v~~~~--v~v~~~~g~l~a~d~~tG~~  167 (377)
T TIGR03300       104 DGGLVFVG----TEKGEVIALDAE---------DGKELWRAKLS-SEVLSPPLVANGL--VVVRTNDGRLTALDAATGER  167 (377)
T ss_pred             cCCEEEEE----cCCCEEEEEECC---------CCcEeeeeccC-ceeecCCEEECCE--EEEECCCCeEEEEEcCCCce
Confidence            35556653    578899999986         45554333221 2222211112333  66666689999999988876


Q ss_pred             CceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---------eeEEEeCC--CCCcEE
Q 019059          156 NAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---------VRNVDYDT--KKKHLL  224 (346)
Q Consensus       156 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---------v~~~~~~~--~~~~~l  224 (346)
                      ..+...................  +..++++..++.+..+|+++++.........         ...+.-+|  .+. .+
T Consensus       168 ~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~-~v  244 (377)
T TIGR03300       168 LWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGG-QV  244 (377)
T ss_pred             eeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECC-EE
Confidence            5554332110000000011111  2457777788999999999887654322110         00111111  233 56


Q ss_pred             EEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccc
Q 019059          225 VTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRAN  304 (346)
Q Consensus       225 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  304 (346)
                      ++++.+|.++.+|.++ ++.+-.... . ......  ..+ ..++.++.||.+..+|..+                   +
T Consensus       245 y~~~~~g~l~a~d~~t-G~~~W~~~~-~-~~~~p~--~~~-~~vyv~~~~G~l~~~d~~t-------------------G  299 (377)
T TIGR03300       245 YAVSYQGRVAALDLRS-GRVLWKRDA-S-SYQGPA--VDD-NRLYVTDADGVVVALDRRS-------------------G  299 (377)
T ss_pred             EEEEcCCEEEEEECCC-CcEEEeecc-C-CccCce--EeC-CEEEEECCCCeEEEEECCC-------------------C
Confidence            6677889999999986 433333321 1 111222  234 5777888899999999987                   4


Q ss_pred             ccccccccc-cceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          305 SLLNSYSDY-EDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       305 ~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      +.+-..... .....+...  .+. .+++++.+|.|+++|.+
T Consensus       300 ~~~W~~~~~~~~~~ssp~i--~g~-~l~~~~~~G~l~~~d~~  338 (377)
T TIGR03300       300 SELWKNDELKYRQLTAPAV--VGG-YLVVGDFEGYLHWLSRE  338 (377)
T ss_pred             cEEEccccccCCccccCEE--ECC-EEEEEeCCCEEEEEECC
Confidence            444332111 111122222  243 67778889999988864

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.60  E-value=1e-05  Score=74.27  Aligned_cols=143  Identities=13%  Similarity=0.118  Sum_probs=93.3

Q ss_pred             CCCCcEEEE-ecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCC-------CCcEEEEecCCeEEEEEccCCC-
Q 019059          131 SGRHDKLVS-IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPH-------DVNAVAATCESSVQFWDLRSMG-  201 (346)
Q Consensus       131 ~~~~~~~~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------~~~l~~~~~d~~i~i~d~~~~~-  201 (346)
                      ..+.+++.. .....|+-.|++.++.........    ..+|..  +.|+       ....+.|-.+..|..||.|-.. 
T Consensus       491 ~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~----~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~  564 (794)
T PF08553_consen  491 QDRNMILLDPNNPNKLYKMDLERGKVVEEWKVHD----DIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN  564 (794)
T ss_pred             cccceEeecCCCCCceEEEecCCCcEEEEeecCC----CcceeE--ecccccccccCCCceEEEECCCceEEeccCCCCC
Confidence            334444444 345788888888776443333322    112333  3332       2346777788999999999643 


Q ss_pred             -ccc----eeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCC
Q 019059          202 -KTN----SIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDS  275 (346)
Q Consensus       202 -~~~----~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~  275 (346)
                       .+.    .+.... ..|++-+.+|  .+|+|+.+|.||+||-- ..+....+.+-..+|..|..+.|| ++|++.+ +.
T Consensus       565 k~v~~~~k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DG-kwilaTc-~t  639 (794)
T PF08553_consen  565 KLVDSQSKQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTADG-KWILATC-KT  639 (794)
T ss_pred             ceeeccccccccCCCceEEEecCCc--eEEEEeCCCcEEeeccc-chhhhhcCCCCCCCeeEEEecCCC-cEEEEee-cc
Confidence             121    111112 8899988888  59999999999999943 344555666778999999999999 6555444 45


Q ss_pred             eEEEEecCC
Q 019059          276 TVNLWLVST  284 (346)
Q Consensus       276 ~i~iwd~~~  284 (346)
                      .|.+++...
T Consensus       640 yLlLi~t~~  648 (794)
T PF08553_consen  640 YLLLIDTLI  648 (794)
T ss_pred             eEEEEEEee
Confidence            788888754

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.59  E-value=2.8e-05  Score=62.65  Aligned_cols=209  Identities=12%  Similarity=0.025  Sum_probs=119.5

Q ss_pred             cceEEEEecCcccCCCCCccceeeeeeecc--CCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCC
Q 019059           90 SYGAAIWQIPELYGQLNSPQLERIAALDAH--VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGM  167 (346)
Q Consensus        90 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~  167 (346)
                      ++.|..+|..         +++.+-.....  .....+.. .+++.+ ++++..++.+..||..+++...+........ 
T Consensus         2 ~g~l~~~d~~---------tG~~~W~~~~~~~~~~~~~~~-~~~~~~-v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~-   69 (238)
T PF13360_consen    2 DGTLSALDPR---------TGKELWSYDLGPGIGGPVATA-VPDGGR-VYVASGDGNLYALDAKTGKVLWRFDLPGPIS-   69 (238)
T ss_dssp             TSEEEEEETT---------TTEEEEEEECSSSCSSEEETE-EEETTE-EEEEETTSEEEEEETTTSEEEEEEECSSCGG-
T ss_pred             CCEEEEEECC---------CCCEEEEEECCCCCCCccceE-EEeCCE-EEEEcCCCEEEEEECCCCCEEEEeecccccc-
Confidence            5678888876         55555554321  11222112 224443 6666679999999998887655554422110 


Q ss_pred             ceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCcccee-ecc----c-eeEEEeCCCCCcEEEEecCCCeEEEEEcccC
Q 019059          168 LHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSI-EHA----H-VRNVDYDTKKKHLLVTAADESGIHLWDLRML  241 (346)
Q Consensus       168 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~----~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  241 (346)
                        ..   . ...+..+++++.++.|+.+|..+++..... ...    . .........+. .++.+..++.|..+|+++ 
T Consensus        70 --~~---~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~l~~~d~~t-  141 (238)
T PF13360_consen   70 --GA---P-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGD-RLYVGTSSGKLVALDPKT-  141 (238)
T ss_dssp             --SG---E-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETT-EEEEEETCSEEEEEETTT-
T ss_pred             --ce---e-eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecC-EEEEEeccCcEEEEecCC-
Confidence              11   1 113566777778889999999999987764 211    1 11222222255 677777789999999997 


Q ss_pred             CcceeeecCCCcc----------e-EEEEeCCCCCcEEEEecCCCe-EEEEecCCCCCCCCCcccccCCccccccccccc
Q 019059          242 KAPIQELPGHTHW----------T-WAVCCNPEYDGFILSAGTDST-VNLWLVSTSNHDELPSESLVESPNQRANSLLNS  309 (346)
Q Consensus       242 ~~~~~~~~~~~~~----------v-~~v~~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (346)
                      ++.+-........          + ..+.+. ++  .++.++.++. +.+ |+.+                   ++.+-.
T Consensus       142 G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~v~~~~~~g~~~~~-d~~t-------------------g~~~w~  198 (238)
T PF13360_consen  142 GKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG--RVYVSSGDGRVVAV-DLAT-------------------GEKLWS  198 (238)
T ss_dssp             TEEEEEEESSTT-SS--EEEETTEEEEEECC-TT--EEEEECCTSSEEEE-ETTT-------------------TEEEEE
T ss_pred             CcEEEEeecCCCCCCcceeeecccccceEEE-CC--EEEEEcCCCeEEEE-ECCC-------------------CCEEEE
Confidence            4455555443311          1 222233 33  5555666664 555 9988                   554432


Q ss_pred             cccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          310 YSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       310 ~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      ..  ...+..+ ..+.+. .|+.++.++.|..||+.
T Consensus       199 ~~--~~~~~~~-~~~~~~-~l~~~~~~~~l~~~d~~  230 (238)
T PF13360_consen  199 KP--ISGIYSL-PSVDGG-TLYVTSSDGRLYALDLK  230 (238)
T ss_dssp             EC--SS-ECEC-EECCCT-EEEEEETTTEEEEEETT
T ss_pred             ec--CCCccCC-ceeeCC-EEEEEeCCCEEEEEECC
Confidence            22  1223332 234555 56666689999999975

...

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.55  E-value=3.1e-06  Score=76.39  Aligned_cols=175  Identities=11%  Similarity=0.108  Sum_probs=123.9

Q ss_pred             cCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCC
Q 019059           87 TGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG  166 (346)
Q Consensus        87 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~  166 (346)
                      ||-...+..+|+.         ..+..+........|.-|+.  +++ .+++|...|+|.+-|.++.+....+.     .
T Consensus       153 Gg~Q~~li~~Dl~---------~~~e~r~~~v~a~~v~imR~--Nnr-~lf~G~t~G~V~LrD~~s~~~iht~~-----a  215 (1118)
T KOG1275|consen  153 GGLQEKLIHIDLN---------TEKETRTTNVSASGVTIMRY--NNR-NLFCGDTRGTVFLRDPNSFETIHTFD-----A  215 (1118)
T ss_pred             cchhhheeeeecc---------cceeeeeeeccCCceEEEEe--cCc-EEEeecccceEEeecCCcCceeeeee-----c
Confidence            3455567777776         44554444434444555544  344 47777778999999998766444443     3


Q ss_pred             CceeeEEEEeCCCCCcEEEEec---------CCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEE
Q 019059          167 MLHYLSGGAWDPHDVNAVAATC---------ESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLW  236 (346)
Q Consensus       167 ~~~~v~~~~~~~~~~~l~~~~~---------d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~  236 (346)
                      |...+..+..  .|+.|+++|.         |..|+|||+|..+.+..+.... ..-+.|+|.-...+++++..|...+-
T Consensus       216 Hs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~v  293 (1118)
T KOG1275|consen  216 HSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFV  293 (1118)
T ss_pred             cccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeec
Confidence            6667776554  6888888874         5668999999888776665333 66778888876688889999999999


Q ss_pred             E---cccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEe
Q 019059          237 D---LRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWL  281 (346)
Q Consensus       237 d---~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd  281 (346)
                      |   +.++..-+..+......+..+.+++++ ..++.|..+|.|.+|.
T Consensus       294 d~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~-~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  294 DTATLSNPPAGVKMVNPNGSGISAFDISSNG-DALAFGDHEGHVNLWA  340 (1118)
T ss_pred             cccccCCCccceeEEccCCCcceeEEecCCC-ceEEEecccCcEeeec
Confidence            9   443322234444455669999999999 9999999999999997

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.55  E-value=1.1e-06  Score=72.98  Aligned_cols=208  Identities=12%  Similarity=0.116  Sum_probs=139.3

Q ss_pred             eccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEec
Q 019059           62 FSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSID  141 (346)
Q Consensus        62 ~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  141 (346)
                      +-|.+.|+.+.... .++++.+    +-||.++.|.-..      ..-.+.+..+..|-..|.+++.+-++. ++.+.+.
T Consensus         6 ymhrd~i~hv~~tk-a~fiiqA----SlDGh~KFWkKs~------isGvEfVKhFraHL~~I~sl~~S~dg~-L~~Sv~d   73 (558)
T KOG0882|consen    6 YMHRDVITHVFPTK-AKFIIQA----SLDGHKKFWKKSR------ISGVEFVKHFRAHLGVILSLAVSYDGW-LFRSVED   73 (558)
T ss_pred             hcccceeeeEeeeh-hheEEee----ecchhhhhcCCCC------ccceeehhhhHHHHHHHHhhhccccce-eEeeccC
Confidence            34778888776554 4566665    6899999998541      012345556778889999999999887 3444466


Q ss_pred             -CCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCC-CC-cEEEEe-cCCeEEEEEccCCCcc-ceeeccc---eeE
Q 019059          142 -EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPH-DV-NAVAAT-CESSVQFWDLRSMGKT-NSIEHAH---VRN  213 (346)
Q Consensus       142 -d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~-~l~~~~-~d~~i~i~d~~~~~~~-~~~~~~~---v~~  213 (346)
                       |..++++|+++-.....+.....++   .+.. ..++. .. .+++.. .++.+.++|-....+. ..+..-|   |..
T Consensus        74 ~Dhs~KvfDvEn~DminmiKL~~lPg---~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~  149 (558)
T KOG0882|consen   74 PDHSVKVFDVENFDMINMIKLVDLPG---FAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKK  149 (558)
T ss_pred             cccceeEEEeeccchhhhcccccCCC---ceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEE
Confidence             8999999998654333333322222   2221 22221 11 233333 5899999998866533 3333334   999


Q ss_pred             EEeCCCCCcEEEEecCCCeEEEEEccc-CCcce-------------eeecCCCcceEEEEeCCCCCcEEEEecCCCeEEE
Q 019059          214 VDYDTKKKHLLVTAADESGIHLWDLRM-LKAPI-------------QELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNL  279 (346)
Q Consensus       214 ~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~-------------~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~i  279 (346)
                      +.+++.+. .+++....|.|.-|.... ...|.             ..+........++.|+|++ ..+.+-+.|..|++
T Consensus       150 i~y~qa~D-s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g-~qistl~~DrkVR~  227 (558)
T KOG0882|consen  150 IRYNQAGD-SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDG-AQISTLNPDRKVRG  227 (558)
T ss_pred             EEeecccc-ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcccc-CcccccCcccEEEE
Confidence            99999998 888888889999998762 11111             1112234567899999999 99999999999999


Q ss_pred             EecCCCCC
Q 019059          280 WLVSTSNH  287 (346)
Q Consensus       280 wd~~~~~~  287 (346)
                      ++..+++.
T Consensus       228 F~~KtGkl  235 (558)
T KOG0882|consen  228 FVFKTGKL  235 (558)
T ss_pred             EEeccchh
Confidence            99998754

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.55  E-value=1.1e-05  Score=69.87  Aligned_cols=69  Identities=12%  Similarity=0.169  Sum_probs=59.7

Q ss_pred             eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          211 VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       211 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      +.+.+++|+.+ .++.|+.||.|.+||... +  +..+....-.++.++|+|+| .++++|+.-|.+.+||+..
T Consensus       262 v~~ca~sp~E~-kLvlGC~DgSiiLyD~~~-~--~t~~~ka~~~P~~iaWHp~g-ai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  262 VICCARSPSED-KLVLGCEDGSIILYDTTR-G--VTLLAKAEFIPTLIAWHPDG-AIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             ceEEecCcccc-eEEEEecCCeEEEEEcCC-C--eeeeeeecccceEEEEcCCC-cEEEEEcCCceEEEEEeec
Confidence            99999999998 899999999999999875 2  33343455667899999999 9999999999999999976

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.53  E-value=1.1e-05  Score=69.90  Aligned_cols=116  Identities=9%  Similarity=0.065  Sum_probs=79.8

Q ss_pred             CceEEEEeecCCCCcEEEE----ecCCe----EEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeE
Q 019059          121 GKINCVLWWSSGRHDKLVS----IDEEN----IFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSV  192 (346)
Q Consensus       121 ~~i~~~~~~~~~~~~~~~~----~~d~~----i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  192 (346)
                      ....++.|+-...+.+.+-    +.+|.    -.+|++..++ ....... .-.....+.+++++|+...++.|+.||.|
T Consensus       206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~k-lqrvsvt-sipL~s~v~~ca~sp~E~kLvlGC~DgSi  283 (545)
T PF11768_consen  206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNK-LQRVSVT-SIPLPSQVICCARSPSEDKLVLGCEDGSI  283 (545)
T ss_pred             CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCc-eeEEEEE-EEecCCcceEEecCcccceEEEEecCCeE
Confidence            3446778876555545443    22343    2456665432 2222111 11234478999999999999999999999


Q ss_pred             EEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEccc
Q 019059          193 QFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRM  240 (346)
Q Consensus       193 ~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  240 (346)
                      .+||...+..... ..+- ++.++|+|+|. ++++|+..|.+.+||+.-
T Consensus       284 iLyD~~~~~t~~~-ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  284 ILYDTTRGVTLLA-KAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             EEEEcCCCeeeee-eecccceEEEEcCCCc-EEEEEcCCceEEEEEeec
Confidence            9999987643322 2222 89999999998 999999999999999864

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.51  E-value=4.4e-05  Score=65.36  Aligned_cols=231  Identities=15%  Similarity=0.189  Sum_probs=121.9

Q ss_pred             cCCCCceEEEEee-----cCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEE
Q 019059           74 CPFDQRIFSTVFS-----TGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLW  148 (346)
Q Consensus        74 ~~~~~~l~~~~~~-----~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vw  148 (346)
                      |||+++++.....     -+..+.+.|+|++         +.+. ..+......+....|+|+|+.  ++-..++.|.++
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~---------~~~~-~~l~~~~~~~~~~~~sP~g~~--~~~v~~~nly~~   68 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIE---------TGEI-TPLTPPPPKLQDAKWSPDGKY--IAFVRDNNLYLR   68 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETT---------TTEE-EESS-EETTBSEEEE-SSSTE--EEEEETTEEEEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecC---------CCce-EECcCCccccccceeecCCCe--eEEEecCceEEE
Confidence            5777777664211     1234568889987         3222 233233667889999999995  333357899999


Q ss_pred             EcCCCCCCceeeecccCC-------------CceeeEEEEeCCCCCcEEEEecC-Ce-----------------------
Q 019059          149 SLDCSNKNAQVQSKQSSG-------------MLHYLSGGAWDPHDVNAVAATCE-SS-----------------------  191 (346)
Q Consensus       149 d~~~~~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~l~~~~~d-~~-----------------------  191 (346)
                      +..++... .+.......             ....-..+.|+||++.|+....| ..                       
T Consensus        69 ~~~~~~~~-~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~  147 (353)
T PF00930_consen   69 DLATGQET-QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIR  147 (353)
T ss_dssp             SSTTSEEE-ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE
T ss_pred             ECCCCCeE-EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccc
Confidence            88765321 111111000             01133667899999988865432 11                       


Q ss_pred             ------------EEEEEccCCCccc-eee-----ccc-eeEEEeCCCCCcE-EEEecCCC---eEEEEEcccCCcceeee
Q 019059          192 ------------VQFWDLRSMGKTN-SIE-----HAH-VRNVDYDTKKKHL-LVTAADES---GIHLWDLRMLKAPIQEL  248 (346)
Q Consensus       192 ------------i~i~d~~~~~~~~-~~~-----~~~-v~~~~~~~~~~~~-l~~~~~dg---~i~i~d~~~~~~~~~~~  248 (346)
                                  +.++|+.+++... ...     ..+ +..+.|.+++..+ +.....+.   .+.++|..+....+...
T Consensus       148 YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~  227 (353)
T PF00930_consen  148 YPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLE  227 (353)
T ss_dssp             --BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEE
T ss_pred             cCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEE
Confidence                        5567776665432 111     112 8999999998722 22333332   46677776533222111


Q ss_pred             cCCCcce---EEEEeC-CCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeE-EEeC
Q 019059          249 PGHTHWT---WAVCCN-PEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYG-LAWS  323 (346)
Q Consensus       249 ~~~~~~v---~~v~~~-~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~  323 (346)
                      ......|   ....|. +++..+|.....||.-+||-+..                  .+.....+....-.|.. +.|+
T Consensus       228 e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~------------------~~~~~~~lT~G~~~V~~i~~~d  289 (353)
T PF00930_consen  228 ETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDL------------------DGGKPRQLTSGDWEVTSILGWD  289 (353)
T ss_dssp             EESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEET------------------TSSEEEESS-SSS-EEEEEEEE
T ss_pred             ecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcc------------------cccceeccccCceeecccceEc
Confidence            2222333   245554 66656777777888555554433                  12323344444444644 6788


Q ss_pred             CCCCcEEEEeec
Q 019059          324 SREPWIFASLSY  335 (346)
Q Consensus       324 ~~~~~~l~s~~~  335 (346)
                      ++++.++.++..
T Consensus       290 ~~~~~iyf~a~~  301 (353)
T PF00930_consen  290 EDNNRIYFTANG  301 (353)
T ss_dssp             CTSSEEEEEESS
T ss_pred             CCCCEEEEEecC
Confidence            887766666664

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.51  E-value=1.2e-05  Score=71.81  Aligned_cols=143  Identities=10%  Similarity=0.063  Sum_probs=102.4

Q ss_pred             CCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccC
Q 019059          120 VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRS  199 (346)
Q Consensus       120 ~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~  199 (346)
                      ...+.|++++.  + .++.+..+|.|++++....-  ....     .|...      ..+|.++++++.||++.|-.+-+
T Consensus        39 ~D~is~~av~~--~-~~~~GtH~g~v~~~~~~~~~--~~~~-----~~s~~------~~~Gey~asCS~DGkv~I~sl~~  102 (846)
T KOG2066|consen   39 NDAISCCAVHD--K-FFALGTHRGAVYLTTCQGNP--KTNF-----DHSSS------ILEGEYVASCSDDGKVVIGSLFT  102 (846)
T ss_pred             hhHHHHHHhhc--c-eeeeccccceEEEEecCCcc--cccc-----ccccc------ccCCceEEEecCCCcEEEeeccC
Confidence            34566666653  2 46677778999999987431  1111     11111      55799999999999999999998


Q ss_pred             CCccceeeccc-eeEEEeCCC-----CCcEEEEecCCCeEEEEEcccCCccee-eecCCCcceEEEEeCCCCCcEEEEec
Q 019059          200 MGKTNSIEHAH-VRNVDYDTK-----KKHLLVTAADESGIHLWDLRMLKAPIQ-ELPGHTHWTWAVCCNPEYDGFILSAG  272 (346)
Q Consensus       200 ~~~~~~~~~~~-v~~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~v~~v~~~~~~~~~l~s~~  272 (346)
                      .+...++.... +.+++++|+     .+ .+++|+.-| +.++.-+-.+.... .+..-.++|.++.|..   .++|-++
T Consensus       103 ~~~~~~~df~rpiksial~Pd~~~~~sk-~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g---~lIAWan  177 (846)
T KOG2066|consen  103 DDEITQYDFKRPIKSIALHPDFSRQQSK-QFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRG---NLIAWAN  177 (846)
T ss_pred             CccceeEecCCcceeEEeccchhhhhhh-heeecCcce-EEEehhhhhcCccceeeecCccceEEEEecC---cEEEEec
Confidence            88877776455 999999998     23 688888877 77776443222222 3555678999999964   7899999


Q ss_pred             CCCeEEEEecCC
Q 019059          273 TDSTVNLWLVST  284 (346)
Q Consensus       273 ~d~~i~iwd~~~  284 (346)
                      .+| |++||+.+
T Consensus       178 d~G-v~vyd~~~  188 (846)
T KOG2066|consen  178 DDG-VKVYDTPT  188 (846)
T ss_pred             CCC-cEEEeccc
Confidence            887 99999987

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.51  E-value=7.7e-05  Score=64.99  Aligned_cols=227  Identities=13%  Similarity=0.111  Sum_probs=114.7

Q ss_pred             eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEE
Q 019059           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV  138 (346)
Q Consensus        59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  138 (346)
                      +.+....-....+.++|+++.++++     .+|...|+...         ......     .+.-....|.+.++  +++
T Consensus        26 k~lg~~~~~p~~ls~npngr~v~V~-----g~geY~iyt~~---------~~r~k~-----~G~g~~~vw~~~n~--yAv   84 (443)
T PF04053_consen   26 KELGSCEIYPQSLSHNPNGRFVLVC-----GDGEYEIYTAL---------AWRNKA-----FGSGLSFVWSSRNR--YAV   84 (443)
T ss_dssp             EEEEE-SS--SEEEE-TTSSEEEEE-----ETTEEEEEETT---------TTEEEE-----EEE-SEEEE-TSSE--EEE
T ss_pred             ccCCCCCcCCeeEEECCCCCEEEEE-----cCCEEEEEEcc---------CCcccc-----cCceeEEEEecCcc--EEE
Confidence            3444444567889999999888874     66677777743         222221     23456788998766  455


Q ss_pred             EecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccceeEEEeCC
Q 019059          139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDT  218 (346)
Q Consensus       139 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~v~~~~~~~  218 (346)
                      -...+.|.++.--+......+....      .+..+-.   |..|+..+ ++.|.+||..+++.++.+....|..+.|++
T Consensus        85 ~~~~~~I~I~kn~~~~~~k~i~~~~------~~~~If~---G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~  154 (443)
T PF04053_consen   85 LESSSTIKIYKNFKNEVVKSIKLPF------SVEKIFG---GNLLGVKS-SDFICFYDWETGKLIRRIDVSAVKYVIWSD  154 (443)
T ss_dssp             E-TTS-EEEEETTEE-TT-----SS-------EEEEE----SSSEEEEE-TTEEEEE-TTT--EEEEESS-E-EEEEE-T
T ss_pred             EECCCeEEEEEcCccccceEEcCCc------ccceEEc---CcEEEEEC-CCCEEEEEhhHcceeeEEecCCCcEEEEEC
Confidence            4447889996332222222222211      2333322   67666665 448999999999999888744489999999


Q ss_pred             CCCcEEEEecCCCeEEEEEcccC----------CcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCC
Q 019059          219 KKKHLLVTAADESGIHLWDLRML----------KAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHD  288 (346)
Q Consensus       219 ~~~~~l~~~~~dg~i~i~d~~~~----------~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  288 (346)
                      ++. +++..+.+ .+.+++....          ......+......|.+..|..+  -+++|...  .++-  +-.    
T Consensus       155 ~g~-~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~--~lkY--l~~----  222 (443)
T PF04053_consen  155 DGE-LVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN--HLKY--LVN----  222 (443)
T ss_dssp             TSS-EEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT--EEEE--EET----
T ss_pred             CCC-EEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC--eEEE--EEc----
Confidence            998 66666554 6777765431          0023333322467788888765  34444443  5655  221    


Q ss_pred             CCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          289 ELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                                     + ....+..-..++.=+.+.|..+ .+.....|+.|..+.++
T Consensus       223 ---------------G-e~~~i~~ld~~~yllgy~~~~~-~ly~~Dr~~~v~~~~ld  262 (443)
T PF04053_consen  223 ---------------G-ETGIIAHLDKPLYLLGYLPKEN-RLYLIDRDGNVISYELD  262 (443)
T ss_dssp             ---------------T-EEEEEEE-SS--EEEEEETTTT-EEEEE-TT--EEEEE--
T ss_pred             ---------------C-CcceEEEcCCceEEEEEEccCC-EEEEEECCCCEEEEEEC
Confidence                           1 1122222234566677777655 66777788888877653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.51  E-value=0.0004  Score=61.11  Aligned_cols=201  Identities=13%  Similarity=0.144  Sum_probs=112.7

Q ss_pred             ceEEeeecCCCCceEEEEeecCCc-ceEEEEecCcccCCCCCccceeeee-eeccCCceEEEEeecCCCCcEEEEec---
Q 019059           67 EIWDLSSCPFDQRIFSTVFSTGES-YGAAIWQIPELYGQLNSPQLERIAA-LDAHVGKINCVLWWSSGRHDKLVSID---  141 (346)
Q Consensus        67 ~v~~~~~~~~~~~l~~~~~~~~~d-~~i~vw~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~---  141 (346)
                      .+...+++|++++++.+...+|+| ..+++.|++         +++.+.. +...  ....+.|.++++.++.+...   
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~---------tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~  193 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLE---------TGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQ  193 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETT---------TTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTT
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECC---------CCcCcCCccccc--ccceEEEeCCCCEEEEEEeCccc
Confidence            344678899999998876555544 679999998         4544432 2221  12239999999975666522   


Q ss_pred             -------CCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec---C-CeEEEEEccCC----Ccccee
Q 019059          142 -------EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC---E-SSVQFWDLRSM----GKTNSI  206 (346)
Q Consensus       142 -------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d-~~i~i~d~~~~----~~~~~~  206 (346)
                             ...|+.|++.+......+........ .....+..++++++++....   + ..+++.|+..+    .....+
T Consensus       194 ~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~-~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l  272 (414)
T PF02897_consen  194 RTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEP-FWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLL  272 (414)
T ss_dssp             SS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCT-TSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEE
T ss_pred             ccccCCCCcEEEEEECCCChHhCeeEEeecCCC-cEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEE
Confidence                   23478888876654433433332221 12567889999999876553   3 46888888875    223333


Q ss_pred             eccc---eeEEEeCCCCCcEEEEec---CCCeEEEEEcccCCc--ceeeecCCCcc--eEEEEeCCCCCcEEEEecCCC-
Q 019059          207 EHAH---VRNVDYDTKKKHLLVTAA---DESGIHLWDLRMLKA--PIQELPGHTHW--TWAVCCNPEYDGFILSAGTDS-  275 (346)
Q Consensus       207 ~~~~---v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~--~~~~~~~~~~~--v~~v~~~~~~~~~l~s~~~d~-  275 (346)
                      ....   ...+... .+. +++...   ..+.|...++.....  ....+..+...  +..+..  .+..+++....++ 
T Consensus       273 ~~~~~~~~~~v~~~-~~~-~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~  348 (414)
T PF02897_consen  273 SPREDGVEYYVDHH-GDR-LYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGS  348 (414)
T ss_dssp             EESSSS-EEEEEEE-TTE-EEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTE
T ss_pred             eCCCCceEEEEEcc-CCE-EEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCc
Confidence            3222   3334333 443 444332   235677777776442  12245455553  445444  3425566666565 


Q ss_pred             -eEEEEecC
Q 019059          276 -TVNLWLVS  283 (346)
Q Consensus       276 -~i~iwd~~  283 (346)
                       .|+++++.
T Consensus       349 ~~l~v~~~~  357 (414)
T PF02897_consen  349 SRLRVYDLD  357 (414)
T ss_dssp             EEEEEEETT
T ss_pred             cEEEEEECC
Confidence             68888888

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=3.6e-06  Score=69.99  Aligned_cols=218  Identities=13%  Similarity=0.056  Sum_probs=140.0

Q ss_pred             ccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec-CCeEEEEE
Q 019059          118 AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-ESSVQFWD  196 (346)
Q Consensus       118 ~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d  196 (346)
                      -|.+.|+.+.-.- .+ +++.++.||.++.|.-..-  ...........|...+.+++.+-++..+.+.+. |..++++|
T Consensus         7 mhrd~i~hv~~tk-a~-fiiqASlDGh~KFWkKs~i--sGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfD   82 (558)
T KOG0882|consen    7 MHRDVITHVFPTK-AK-FIIQASLDGHKKFWKKSRI--SGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFD   82 (558)
T ss_pred             cccceeeeEeeeh-hh-eEEeeecchhhhhcCCCCc--cceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEE
Confidence            3666676655432 23 4777788999999986521  112223334456678888888888888888777 99999999


Q ss_pred             ccCCCccceeeccc---eeEEEeCCCCCc-EEE-EecCCCeEEEEEcccCCcce-eeecCCCcceEEEEeCCCCCcEEEE
Q 019059          197 LRSMGKTNSIEHAH---VRNVDYDTKKKH-LLV-TAADESGIHLWDLRMLKAPI-QELPGHTHWTWAVCCNPEYDGFILS  270 (346)
Q Consensus       197 ~~~~~~~~~~~~~~---v~~~~~~~~~~~-~l~-~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~v~~v~~~~~~~~~l~s  270 (346)
                      +.+-..+.-+....   ..+...+|.... +++ ..-.++.+.++|-+....+. ..-.-|..+|.++.+.+-+ ..+.+
T Consensus        83 vEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~-Ds~vS  161 (558)
T KOG0882|consen   83 VENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAG-DSAVS  161 (558)
T ss_pred             eeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccc-cceee
Confidence            98766554444333   222333343221 233 33467899999988644333 3344699999999999999 88899


Q ss_pred             ecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          271 AGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       271 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      ....|.|.-|..... - ...........  ....-+..+........++.|+|++. .+.+-+.|..|+++.+.
T Consensus       162 iD~~gmVEyWs~e~~-~-qfPr~~l~~~~--K~eTdLy~f~K~Kt~pts~Efsp~g~-qistl~~DrkVR~F~~K  231 (558)
T KOG0882|consen  162 IDISGMVEYWSAEGP-F-QFPRTNLNFEL--KHETDLYGFPKAKTEPTSFEFSPDGA-QISTLNPDRKVRGFVFK  231 (558)
T ss_pred             ccccceeEeecCCCc-c-cCccccccccc--cccchhhcccccccCccceEEccccC-cccccCcccEEEEEEec
Confidence            888999999987730 0 00000000000  00111222333445678999999997 88999999999999764

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=8.6e-06  Score=66.89  Aligned_cols=156  Identities=13%  Similarity=0.049  Sum_probs=96.3

Q ss_pred             cceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcE-EEEe
Q 019059          109 QLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNA-VAAT  187 (346)
Q Consensus       109 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~  187 (346)
                      +.+....+..+...|..++|+|....++..++.+..|+|.|+++..........      ..+.+++|.-+..+. ++|-
T Consensus       182 ~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~------~~~wSC~wDlde~h~IYaGl  255 (463)
T KOG1645|consen  182 DFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY------NQIWSCCWDLDERHVIYAGL  255 (463)
T ss_pred             CcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc------CCceeeeeccCCcceeEEec
Confidence            455566677788899999999999987777788999999999987655544432      389999999887665 4555


Q ss_pred             cCCeEEEEEccCCCccceeeccc-----eeEEEe------CCCCCcEEEEecCCCeEEEEEcccCCc-ceeeec-CCCcc
Q 019059          188 CESSVQFWDLRSMGKTNSIEHAH-----VRNVDY------DTKKKHLLVTAADESGIHLWDLRMLKA-PIQELP-GHTHW  254 (346)
Q Consensus       188 ~d~~i~i~d~~~~~~~~~~~~~~-----v~~~~~------~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~-~~~~~  254 (346)
                      ..|.|.+||++..+-......+.     |..++.      .+.+. +++....  .+..|.+..... +...+. +..+.
T Consensus       256 ~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg-lLv~~lt--~l~f~ei~~s~~~~p~vlele~pG~  332 (463)
T KOG1645|consen  256 QNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG-LLVFALT--VLQFYEIVFSAECLPCVLELEPPGI  332 (463)
T ss_pred             cCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccc-eEEeeeh--hhhhhhhhccccCCCcccccCCCcc
Confidence            79999999999765322111111     333322      23343 4444443  345565442111 111111 23455


Q ss_pred             eEEEEeCCCCCcEEEEecC
Q 019059          255 TWAVCCNPEYDGFILSAGT  273 (346)
Q Consensus       255 v~~v~~~~~~~~~l~s~~~  273 (346)
                      ..++..++.....|++.-.
T Consensus       333 cismqy~~~snh~l~tyRs  351 (463)
T KOG1645|consen  333 CISMQYHGVSNHLLLTYRS  351 (463)
T ss_pred             eeeeeecCccceEEEEecC
Confidence            5566666655455555443

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.47  E-value=2.1e-05  Score=69.71  Aligned_cols=172  Identities=11%  Similarity=-0.028  Sum_probs=106.3

Q ss_pred             cceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEe--c-CCeEEEEEcCCCCCCceeeecccCC
Q 019059           90 SYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI--D-EENIFLWSLDCSNKNAQVQSKQSSG  166 (346)
Q Consensus        90 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~-d~~i~vwd~~~~~~~~~~~~~~~~~  166 (346)
                      .+.+.+.|.+         +.+...++..- .....++++++|+++++++.  + ...+..-+..+..  ..... ... 
T Consensus       214 ~~~vSvID~e---------tmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d--~~vvf-ni~-  279 (635)
T PRK02888        214 RSLFTAVDAE---------TMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD--WVVVF-NIA-  279 (635)
T ss_pred             eEEEEEEECc---------cceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCc--eEEEE-chH-
Confidence            3455666655         44444444332 24466788899986444431  2 2233333322111  00000 000 


Q ss_pred             CceeeEEEEeCCCCCcEEEEecCCeEEEEEccC-----CCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEccc
Q 019059          167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRS-----MGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRM  240 (346)
Q Consensus       167 ~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-----~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  240 (346)
                         .+  -++.++|++...  .++.|.+.|.++     .+....+..+. +..++++|||+++++++..+.+|.+.|+.+
T Consensus       280 ---~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k  352 (635)
T PRK02888        280 ---RI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRK  352 (635)
T ss_pred             ---HH--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChh
Confidence               00  134456776665  367899999998     45556666666 999999999998888888899999999987


Q ss_pred             CCc-----------ceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          241 LKA-----------PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       241 ~~~-----------~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      ...           .+.+..- .......+|.++| ....|.-.|.+|..||+..
T Consensus       353 ~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G-~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        353 LDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRG-NAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             hhhhhhccCCccceEEEeecc-CCCcceEEECCCC-CEEEeEeecceeEEEehHH
Confidence            442           1222222 2334567899999 8888888899999999876

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.42  E-value=2.5e-05  Score=69.79  Aligned_cols=174  Identities=11%  Similarity=0.121  Sum_probs=112.9

Q ss_pred             cceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCC
Q 019059           28 HTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNS  107 (346)
Q Consensus        28 ~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~  107 (346)
                      ...|+.|+    +.+.+++...+...     ...+.|...      .-+|.+++++    +.||+|.|-.+.        
T Consensus        49 ~~~~~~Gt----H~g~v~~~~~~~~~-----~~~~~~s~~------~~~Gey~asC----S~DGkv~I~sl~--------  101 (846)
T KOG2066|consen   49 DKFFALGT----HRGAVYLTTCQGNP-----KTNFDHSSS------ILEGEYVASC----SDDGKVVIGSLF--------  101 (846)
T ss_pred             cceeeecc----ccceEEEEecCCcc-----ccccccccc------ccCCceEEEe----cCCCcEEEeecc--------
Confidence            34555564    56677777666532     222334433      4568888875    799999999887        


Q ss_pred             ccceeeeeeeccCCceEEEEeecC----CCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcE
Q 019059          108 PQLERIAALDAHVGKINCVLWWSS----GRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNA  183 (346)
Q Consensus       108 ~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  183 (346)
                       +.+...++ ....++.+++++|+    ....++++|..| +.++.-+--+..........   .++|.++.|.  |.++
T Consensus       102 -~~~~~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~---eG~I~~i~W~--g~lI  173 (846)
T KOG2066|consen  102 -TDDEITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEG---EGPIHSIKWR--GNLI  173 (846)
T ss_pred             -CCccceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecC---ccceEEEEec--CcEE
Confidence             44554555 34568999999998    222377777767 77776443222222322222   3489999996  5555


Q ss_pred             EEEecCCeEEEEEccCCCccceeeccc--------eeEEEeCCCCCcEEEEecCCCeEEEEEccc
Q 019059          184 VAATCESSVQFWDLRSMGKTNSIEHAH--------VRNVDYDTKKKHLLVTAADESGIHLWDLRM  240 (346)
Q Consensus       184 ~~~~~d~~i~i~d~~~~~~~~~~~~~~--------v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  240 (346)
                      +-+. |-.|++||+.+++.+..++.++        ...+.|.++..  ++.|=. .+|++..++.
T Consensus       174 AWan-d~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~--LVIGW~-d~v~i~~I~~  234 (846)
T KOG2066|consen  174 AWAN-DDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR--LVIGWG-DSVKICSIKK  234 (846)
T ss_pred             EEec-CCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe--EEEecC-CeEEEEEEec
Confidence            5554 5559999999988777666444        66788988775  555544 4889998883

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.41  E-value=0.00026  Score=56.58  Aligned_cols=200  Identities=10%  Similarity=0.082  Sum_probs=109.7

Q ss_pred             eeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEE
Q 019059          115 ALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQF  194 (346)
Q Consensus       115 ~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  194 (346)
                      .+.+-...+..++|+|+...++++....+.|..++.+ ++...++....    .....++++..++.++++.-.++.+.+
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g----~~D~EgI~y~g~~~~vl~~Er~~~L~~   90 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDG----FGDYEGITYLGNGRYVLSEERDQRLYI   90 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-----SSEEEEEE-STTEEEEEETTTTEEEE
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCC----CCCceeEEEECCCEEEEEEcCCCcEEE
Confidence            3445556799999999988666666667888877764 33333322211    236788888877766665556899999


Q ss_pred             EEccCCCcc------ceee--cc--c---eeEEEeCCCCCcEEEEecCCCeEEEEEccc--CCcceee--------ecCC
Q 019059          195 WDLRSMGKT------NSIE--HA--H---VRNVDYDTKKKHLLVTAADESGIHLWDLRM--LKAPIQE--------LPGH  251 (346)
Q Consensus       195 ~d~~~~~~~------~~~~--~~--~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~--------~~~~  251 (346)
                      +++......      ..+.  ..  +   +..++|+|.+. .|+.+-+..-..+|.++.  ....+..        ....
T Consensus        91 ~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~-~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (248)
T PF06977_consen   91 FTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTN-RLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF  169 (248)
T ss_dssp             EEE----TT--EEEEEEEE---S---SS--EEEEEETTTT-EEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred             EEEeccccccchhhceEEecccccCCCcceEEEEEcCCCC-EEEEEeCCCChhhEEEccccCccceeeccccccccccce
Confidence            988543211      1121  11  1   88999999887 455555555566776653  1111111        1123


Q ss_pred             CcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccc--c--c-----cceeeEEEe
Q 019059          252 THWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYS--D--Y-----EDSVYGLAW  322 (346)
Q Consensus       252 ~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~-----~~~v~~~~~  322 (346)
                      ...+.++.++|....+++....+..|..+|..                    ++++..+.  .  |     -...-.|+|
T Consensus       170 ~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~--------------------G~~~~~~~L~~g~~gl~~~~~QpEGIa~  229 (248)
T PF06977_consen  170 VRDLSGLSYDPRTGHLLILSDESRLLLELDRQ--------------------GRVVSSLSLDRGFHGLSKDIPQPEGIAF  229 (248)
T ss_dssp             SS---EEEEETTTTEEEEEETTTTEEEEE-TT----------------------EEEEEE-STTGGG-SS---SEEEEEE
T ss_pred             eccccceEEcCCCCeEEEEECCCCeEEEECCC--------------------CCEEEEEEeCCcccCcccccCCccEEEE
Confidence            35678899999876777778888899999955                    34433222  1  1     123678999


Q ss_pred             CCCCCcEEEEeecCCeEEEe
Q 019059          323 SSREPWIFASLSYDGRVRNH  342 (346)
Q Consensus       323 ~~~~~~~l~s~~~d~~v~vw  342 (346)
                      .++|. +. ..++-+..++|
T Consensus       230 d~~G~-LY-IvsEpNlfy~f  247 (248)
T PF06977_consen  230 DPDGN-LY-IVSEPNLFYRF  247 (248)
T ss_dssp             -TT---EE-EEETTTEEEEE
T ss_pred             CCCCC-EE-EEcCCceEEEe
Confidence            99986 44 45566666655

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.39  E-value=6.1e-07  Score=80.63  Aligned_cols=193  Identities=13%  Similarity=0.211  Sum_probs=131.8

Q ss_pred             ceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecC
Q 019059          110 LERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE  189 (346)
Q Consensus       110 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  189 (346)
                      .+..++++.|+...+|++|+-+.++ +++|+..|.|+++++.++.....+     ..|...++.+.-+.+|..+++.+.-
T Consensus      1091 Fr~w~~frd~~~~fTc~afs~~~~h-L~vG~~~Geik~~nv~sG~~e~s~-----ncH~SavT~vePs~dgs~~Ltsss~ 1164 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNH-LAVGSHAGEIKIFNVSSGSMEESV-----NCHQSAVTLVEPSVDGSTQLTSSSS 1164 (1516)
T ss_pred             cccchhhhccccceeeEEeecCCce-EEeeeccceEEEEEccCccccccc-----cccccccccccccCCcceeeeeccc
Confidence            4555667788899999999998885 777777999999999987644333     4577799999989899988877643


Q ss_pred             --CeEEEEEccC-CCccceeeccceeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceee-ecC---CCcceEEEEeCC
Q 019059          190 --SSVQFWDLRS-MGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQE-LPG---HTHWTWAVCCNP  262 (346)
Q Consensus       190 --~~i~i~d~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~---~~~~v~~v~~~~  262 (346)
                        -...+|++.. +.+.+++..  -.++.|+..-. .-+.|..-....+||+.+.. ++.+ +.+   ....-++..|+|
T Consensus      1165 S~PlsaLW~~~s~~~~~Hsf~e--d~~vkFsn~~q-~r~~gt~~d~a~~YDvqT~~-~l~tylt~~~~~~y~~n~a~FsP 1240 (1516)
T KOG1832|consen 1165 SSPLSALWDASSTGGPRHSFDE--DKAVKFSNSLQ-FRALGTEADDALLYDVQTCS-PLQTYLTDTVTSSYSNNLAHFSP 1240 (1516)
T ss_pred             cCchHHHhccccccCccccccc--cceeehhhhHH-HHHhcccccceEEEecccCc-HHHHhcCcchhhhhhccccccCC
Confidence              2567899874 344455443  56778876654 33344444678999999844 5544 322   223336788999


Q ss_pred             CCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEe
Q 019059          263 EYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNH  342 (346)
Q Consensus       263 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw  342 (346)
                      +. .++.   .||.  +||++.                   .+.++.|...... -.=.|+|+|. -++.-++     ||
T Consensus      1241 ~D-~LIl---ndGv--LWDvR~-------------------~~aIh~FD~ft~~-~~G~FHP~g~-eVIINSE-----Iw 1288 (1516)
T KOG1832|consen 1241 CD-TLIL---NDGV--LWDVRI-------------------PEAIHRFDQFTDY-GGGGFHPSGN-EVIINSE-----IW 1288 (1516)
T ss_pred             Cc-ceEe---eCce--eeeecc-------------------HHHHhhhhhheec-ccccccCCCc-eEEeech-----hh
Confidence            98 7665   3553  799998                   6677766654422 2235889886 4555443     66


Q ss_pred             ee
Q 019059          343 ML  344 (346)
Q Consensus       343 ~~  344 (346)
                      |+
T Consensus      1289 D~ 1290 (1516)
T KOG1832|consen 1289 DM 1290 (1516)
T ss_pred             hh
Confidence            64

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.38  E-value=0.00023  Score=57.33  Aligned_cols=182  Identities=9%  Similarity=0.048  Sum_probs=106.6

Q ss_pred             CCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCC
Q 019059           76 FDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNK  155 (346)
Q Consensus        76 ~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~  155 (346)
                      +++.++++    +.++.+..||..         +++.+-.... ...+.......++.  +++...++.++.+|..+++.
T Consensus        35 ~~~~v~~~----~~~~~l~~~d~~---------tG~~~W~~~~-~~~~~~~~~~~~~~--v~v~~~~~~l~~~d~~tG~~   98 (238)
T PF13360_consen   35 DGGRVYVA----SGDGNLYALDAK---------TGKVLWRFDL-PGPISGAPVVDGGR--VYVGTSDGSLYALDAKTGKV   98 (238)
T ss_dssp             ETTEEEEE----ETTSEEEEEETT---------TSEEEEEEEC-SSCGGSGEEEETTE--EEEEETTSEEEEEETTTSCE
T ss_pred             eCCEEEEE----cCCCEEEEEECC---------CCCEEEEeec-cccccceeeecccc--cccccceeeeEecccCCcce
Confidence            46666664    478899999987         5666655543 22222222333343  55555678999999988887


Q ss_pred             Ccee-eecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc------e-------eEEEeCCCCC
Q 019059          156 NAQV-QSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH------V-------RNVDYDTKKK  221 (346)
Q Consensus       156 ~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~------v-------~~~~~~~~~~  221 (346)
                      ..+. ................+  .+..++++..++.|..+|+++|+.+.......      +       ..+.+. ++ 
T Consensus        99 ~W~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-  174 (238)
T PF13360_consen   99 LWSIYLTSSPPAGVRSSSSPAV--DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-  174 (238)
T ss_dssp             EEEEEE-SSCTCSTB--SEEEE--ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-
T ss_pred             eeeeccccccccccccccCceE--ecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC-
Confidence            6663 22211111111122222  36778888889999999999998765554211      1       233333 34 


Q ss_pred             cEEEEecCCCe-EEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          222 HLLVTAADESG-IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       222 ~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                       .++.+..++. +.+ |+++.. .+-...  ...+..+ ..+.+ ..|+.++.++.|..||+++
T Consensus       175 -~v~~~~~~g~~~~~-d~~tg~-~~w~~~--~~~~~~~-~~~~~-~~l~~~~~~~~l~~~d~~t  231 (238)
T PF13360_consen  175 -RVYVSSGDGRVVAV-DLATGE-KLWSKP--ISGIYSL-PSVDG-GTLYVTSSDGRLYALDLKT  231 (238)
T ss_dssp             -EEEEECCTSSEEEE-ETTTTE-EEEEEC--SS-ECEC-EECCC-TEEEEEETTTEEEEEETTT
T ss_pred             -EEEEEcCCCeEEEE-ECCCCC-EEEEec--CCCccCC-ceeeC-CEEEEEeCCCEEEEEECCC
Confidence             4555555664 555 988743 232222  2233332 33555 6677777899999999998

...

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.36  E-value=0.00047  Score=60.17  Aligned_cols=180  Identities=12%  Similarity=0.010  Sum_probs=102.4

Q ss_pred             EEEEecCCeEEEEEcCCCCCCceeeecccCCCc--eeeEEEEeCC--CCCcEEEEecCCeEEEEEccCCCccceeeccce
Q 019059          136 KLVSIDEENIFLWSLDCSNKNAQVQSKQSSGML--HYLSGGAWDP--HDVNAVAATCESSVQFWDLRSMGKTNSIEHAHV  211 (346)
Q Consensus       136 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~v  211 (346)
                      ++.+..++.+..+|..+++...+.......+..  .....+.-+|  .+..+++++.++.+..+|+.+++.+-....+..
T Consensus       208 v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~  287 (394)
T PRK11138        208 AIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGSV  287 (394)
T ss_pred             EEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCCc
Confidence            555666889999998887765543321110000  0011111112  245677788899999999999986544332222


Q ss_pred             eEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCC-cceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCC
Q 019059          212 RNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHT-HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDEL  290 (346)
Q Consensus       212 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  290 (346)
                      ..+..  .+. .++.++.+|.+..+|..+.. .+-....-. ....+...  .+ ..|+.++.||.|.+.|..+      
T Consensus       288 ~~~~~--~~~-~vy~~~~~g~l~ald~~tG~-~~W~~~~~~~~~~~sp~v--~~-g~l~v~~~~G~l~~ld~~t------  354 (394)
T PRK11138        288 NDFAV--DGG-RIYLVDQNDRVYALDTRGGV-ELWSQSDLLHRLLTAPVL--YN-GYLVVGDSEGYLHWINRED------  354 (394)
T ss_pred             cCcEE--ECC-EEEEEcCCCeEEEEECCCCc-EEEcccccCCCcccCCEE--EC-CEEEEEeCCCEEEEEECCC------
Confidence            22222  233 56667788999999988633 322211101 11122222  13 5678889999999999988      


Q ss_pred             CcccccCCccccccccccccccccceee-EEEeCCCCCcEEEEeecCCeEEEeee
Q 019059          291 PSESLVESPNQRANSLLNSYSDYEDSVY-GLAWSSREPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~s~~~d~~v~vw~~  344 (346)
                                   ++.+....-....+. ...+. ++  .|..++.||.|+.+++
T Consensus       355 -------------G~~~~~~~~~~~~~~s~P~~~-~~--~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        355 -------------GRFVAQQKVDSSGFLSEPVVA-DD--KLLIQARDGTVYAITR  393 (394)
T ss_pred             -------------CCEEEEEEcCCCcceeCCEEE-CC--EEEEEeCCceEEEEeC
Confidence                         666655433222222 12222 33  5777888999988764

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.35  E-value=0.00061  Score=56.45  Aligned_cols=227  Identities=11%  Similarity=0.041  Sum_probs=128.9

Q ss_pred             EeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEE
Q 019059           70 DLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWS  149 (346)
Q Consensus        70 ~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd  149 (346)
                      +..|.++...|+-+   .-..+.|.-|+..         .+ ....+. +.+.+.++.....+.. ++++  +..+.+++
T Consensus        29 gP~w~~~~~~L~w~---DI~~~~i~r~~~~---------~g-~~~~~~-~p~~~~~~~~~d~~g~-Lv~~--~~g~~~~~   91 (307)
T COG3386          29 GPVWDPDRGALLWV---DILGGRIHRLDPE---------TG-KKRVFP-SPGGFSSGALIDAGGR-LIAC--EHGVRLLD   91 (307)
T ss_pred             CccCcCCCCEEEEE---eCCCCeEEEecCC---------cC-ceEEEE-CCCCcccceeecCCCe-EEEE--ccccEEEe
Confidence            34677777766665   3456677777765         22 223332 2333445444444441 4444  34566677


Q ss_pred             cCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec-----------CCeEEEEEccCCCccceeeccc---eeEEE
Q 019059          150 LDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-----------ESSVQFWDLRSMGKTNSIEHAH---VRNVD  215 (346)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------d~~i~i~d~~~~~~~~~~~~~~---v~~~~  215 (346)
                      .+++.....+............+.+...|+|...+....           -|.|+.+|. .+...+.+. .+   .+.|+
T Consensus        92 ~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~-~~~~~~NGla  169 (307)
T COG3386          92 PDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLD-DDLTIPNGLA  169 (307)
T ss_pred             ccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeec-CcEEecCceE
Confidence            654443222222222223346788899999887665544           134555554 344444333 43   88999


Q ss_pred             eCCCCCcEEEEecCCCeEEEEEcccCC-----c-ceeeecCCCcceEEEEeCCCCCcEEEEecCCC-eEEEEecCCCCCC
Q 019059          216 YDTKKKHLLVTAADESGIHLWDLRMLK-----A-PIQELPGHTHWTWAVCCNPEYDGFILSAGTDS-TVNLWLVSTSNHD  288 (346)
Q Consensus       216 ~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~-~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~  288 (346)
                      |+|+++.++++=+..+.|+-|++....     + ....+....+..-.++...+| .+.+++..+| .|.+|+..     
T Consensus       170 ~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG-~lw~~a~~~g~~v~~~~pd-----  243 (307)
T COG3386         170 FSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADG-NLWVAAVWGGGRVVRFNPD-----  243 (307)
T ss_pred             ECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCC-CEEEecccCCceEEEECCC-----
Confidence            999998566666666888888776211     1 111122233455566777777 5554444443 88888887     


Q ss_pred             CCCcccccCCccccccccccccccccceeeEEEeC-CCCCcEEEEeecC
Q 019059          289 ELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWS-SREPWIFASLSYD  336 (346)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~s~~~d  336 (346)
                                     ++++..+.-....+++++|- |+.+.++++....
T Consensus       244 ---------------G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~  277 (307)
T COG3386         244 ---------------GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARS  277 (307)
T ss_pred             ---------------CcEEEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence                           46666665554667888885 3445566666554

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.33  E-value=0.00013  Score=68.39  Aligned_cols=198  Identities=14%  Similarity=0.166  Sum_probs=124.6

Q ss_pred             CCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEc--
Q 019059          120 VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDL--  197 (346)
Q Consensus       120 ~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~--  197 (346)
                      +..|.++.|..+... ++.+..+|.|.+-|..+..  ......    ....|.+++|+||.+.++..+..+++.+-+-  
T Consensus        68 d~~i~s~~fl~d~~~-i~v~~~~G~iilvd~et~~--~eivg~----vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f  140 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNS-ICVITALGDIILVDPETLE--LEIVGN----VDNGISAASWSPDEELLALITGRQTLLFMTKDF  140 (1265)
T ss_pred             CcceEEEEEecccce-EEEEecCCcEEEEcccccc--eeeeee----ccCceEEEeecCCCcEEEEEeCCcEEEEEeccc
Confidence            468999999998886 4444558888888877543  222221    2337999999999999999888777766332  


Q ss_pred             --cCCCcc-------------------ceee------------------c-----cceeEEEeCCCCCcEEEE-----ec
Q 019059          198 --RSMGKT-------------------NSIE------------------H-----AHVRNVDYDTKKKHLLVT-----AA  228 (346)
Q Consensus       198 --~~~~~~-------------------~~~~------------------~-----~~v~~~~~~~~~~~~l~~-----~~  228 (346)
                        -..+++                   ..+.                  .     .|-.+|.|--||. ++++     ..
T Consensus       141 ~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~-~fAVs~~~~~~  219 (1265)
T KOG1920|consen  141 EPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGE-YFAVSFVESET  219 (1265)
T ss_pred             cchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCc-EEEEEEEeccC
Confidence              111110                   1111                  0     0033589999998 6666     22


Q ss_pred             CCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEec---CCCeEEEEecCCCCCCCCCcccccCCccccccc
Q 019059          229 DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG---TDSTVNLWLVSTSNHDELPSESLVESPNQRANS  305 (346)
Q Consensus       229 ~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  305 (346)
                      ....|++||-.  +..-..-....+.-.+++|-|.| .++++-.   .|+.|.+|..+....                ++
T Consensus       220 ~~RkirV~drE--g~Lns~se~~~~l~~~LsWkPsg-s~iA~iq~~~sd~~IvffErNGL~h----------------g~  280 (1265)
T KOG1920|consen  220 GTRKIRVYDRE--GALNSTSEPVEGLQHSLSWKPSG-SLIAAIQCKTSDSDIVFFERNGLRH----------------GE  280 (1265)
T ss_pred             CceeEEEeccc--chhhcccCcccccccceeecCCC-CeEeeeeecCCCCcEEEEecCCccc----------------cc
Confidence            23789999966  21111111223344678999999 8888753   356799998764110                22


Q ss_pred             cccccccccceeeEEEeCCCCCcEEEE---eecCCeEEEeeec
Q 019059          306 LLNSYSDYEDSVYGLAWSSREPWIFAS---LSYDGRVRNHMLE  345 (346)
Q Consensus       306 ~~~~~~~~~~~v~~~~~~~~~~~~l~s---~~~d~~v~vw~~~  345 (346)
                      ....+......|..++|+.++. +||.   ......|++|-+.
T Consensus       281 f~l~~p~de~~ve~L~Wns~sd-iLAv~~~~~e~~~v~lwt~~  322 (1265)
T KOG1920|consen  281 FVLPFPLDEKEVEELAWNSNSD-ILAVVTSNLENSLVQLWTTG  322 (1265)
T ss_pred             cccCCcccccchheeeecCCCC-ceeeeecccccceEEEEEec
Confidence            2223333444589999999987 7777   5555569999753

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.32  E-value=0.0012  Score=57.16  Aligned_cols=238  Identities=13%  Similarity=0.087  Sum_probs=144.7

Q ss_pred             ceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEE
Q 019059           67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIF  146 (346)
Q Consensus        67 ~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~  146 (346)
                      ....+...|++..+..+.  ...+ .+..-+..         ..........-...-..++.++.+...++....++.|.
T Consensus        32 ~~~~v~~~~~g~~~~v~~--~~~~-~~~~~~~~---------~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~   99 (381)
T COG3391          32 GPGGVAVNPDGTQVYVAN--SGSN-DVSVIDAT---------SNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVS   99 (381)
T ss_pred             CCceeEEcCccCEEEEEe--ecCc-eeeecccc---------cceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEE
Confidence            455677888886666653  1222 33333322         11111111111133457788899987666666679999


Q ss_pred             EEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec---CCeEEEEEccCCCccceeeccc-eeEEEeCCCCCc
Q 019059          147 LWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC---ESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKH  222 (346)
Q Consensus       147 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~  222 (346)
                      +.|..+...........      ....++++|+++.+.++..   ++.+.+.|..+.+.......+. ...++++|++..
T Consensus       100 vid~~~~~~~~~~~vG~------~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~  173 (381)
T COG3391         100 VIDTATNTVLGSIPVGL------GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNK  173 (381)
T ss_pred             EEcCcccceeeEeeecc------CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCe
Confidence            99976554333333222      5678899999988887765   6899999999988887766554 789999999996


Q ss_pred             EEEEecCCCeEEEEEcccCCccee-e---ecCCCcceEEEEeCCCCCcEEEEec-CC--CeEEEEecCCCCCCCCCcccc
Q 019059          223 LLVTAADESGIHLWDLRMLKAPIQ-E---LPGHTHWTWAVCCNPEYDGFILSAG-TD--STVNLWLVSTSNHDELPSESL  295 (346)
Q Consensus       223 ~l~~~~~dg~i~i~d~~~~~~~~~-~---~~~~~~~v~~v~~~~~~~~~l~s~~-~d--~~i~iwd~~~~~~~~~~~~~~  295 (346)
                      ++++-..++.|.+.|... ....+ .   ...-......+.++|++ ..+.... .+  +.+...|...           
T Consensus       174 vyv~~~~~~~v~vi~~~~-~~v~~~~~~~~~~~~~~P~~i~v~~~g-~~~yV~~~~~~~~~v~~id~~~-----------  240 (381)
T COG3391         174 VYVTNSDDNTVSVIDTSG-NSVVRGSVGSLVGVGTGPAGIAVDPDG-NRVYVANDGSGSNNVLKIDTAT-----------  240 (381)
T ss_pred             EEEEecCCCeEEEEeCCC-cceeccccccccccCCCCceEEECCCC-CEEEEEeccCCCceEEEEeCCC-----------
Confidence            666666889999999764 22221 0   11122344678899999 5444433 33  5888888887           


Q ss_pred             cCCccccccccccc-cccccceeeEEEeCCCCCcEEEEeecCCeEEEee
Q 019059          296 VESPNQRANSLLNS-YSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHM  343 (346)
Q Consensus       296 ~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~  343 (346)
                              ...... ...-......+..+|+|....+.-+..+.+.+-|
T Consensus       241 --------~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid  281 (381)
T COG3391         241 --------GNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVID  281 (381)
T ss_pred             --------ceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEe
Confidence                    333332 1111103456778888874444434445555544

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.29  E-value=0.0016  Score=54.75  Aligned_cols=284  Identities=14%  Similarity=0.216  Sum_probs=130.6

Q ss_pred             CCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccc-cceEEeeecCCCCceEEEEeecCCcceEEEEecCccc
Q 019059           24 ADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHP-NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELY  102 (346)
Q Consensus        24 ~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~  102 (346)
                      +..++.+|+.++. .....+++++++...    ...++...+ .......++|+++.++...    ....|.--|++   
T Consensus        43 ft~dG~kllF~s~-~dg~~nly~lDL~t~----~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~----~~~~l~~vdL~---  110 (386)
T PF14583_consen   43 FTDDGRKLLFASD-FDGNRNLYLLDLATG----EITQLTDGPGDNTFGGFLSPDDRALYYVK----NGRSLRRVDLD---  110 (386)
T ss_dssp             B-TTS-EEEEEE--TTSS-EEEEEETTT-----EEEE---SS-B-TTT-EE-TTSSEEEEEE----TTTEEEEEETT---
T ss_pred             cCCCCCEEEEEec-cCCCcceEEEEcccC----EEEECccCCCCCccceEEecCCCeEEEEE----CCCeEEEEECC---
Confidence            5667878887654 234567778877764    234444443 2344567788888877652    44577777887   


Q ss_pred             CCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEec----C-------------------CeEEEEEcCCCCCCcee
Q 019059          103 GQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSID----E-------------------ENIFLWSLDCSNKNAQV  159 (346)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~----d-------------------~~i~vwd~~~~~~~~~~  159 (346)
                            +.+....+......+-...|..+...-.+++..    |                   ..|..-|+.+++.....
T Consensus       111 ------T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~  184 (386)
T PF14583_consen  111 ------TLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVF  184 (386)
T ss_dssp             ------T--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEE
T ss_pred             ------cCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEE
Confidence                  444444455555666556665332222444421    1                   22444555554422222


Q ss_pred             eecccCCCceeeEEEEeCCCCCcEEEEecCC-----eEEEEEccCC-Cccceee---ccc-eeEEEeCCCCCcEEEEec-
Q 019059          160 QSKQSSGMLHYLSGGAWDPHDVNAVAATCES-----SVQFWDLRSM-GKTNSIE---HAH-VRNVDYDTKKKHLLVTAA-  228 (346)
Q Consensus       160 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~-~~~~~~~---~~~-v~~~~~~~~~~~~l~~~~-  228 (346)
                      ..      ...+..+.|+|....+++-|..|     .-|+|-+++. .....+.   ... +..=-|.|+|..+...+. 
T Consensus       185 ~~------~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~  258 (386)
T PF14583_consen  185 ED------TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYT  258 (386)
T ss_dssp             EE------SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEE
T ss_pred             ec------CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeec
Confidence            21      12567889999888888877532     1356665532 2222222   122 777789999985544332 


Q ss_pred             ---CCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCC----------------eEEEEecCCCCCCC
Q 019059          229 ---DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDS----------------TVNLWLVSTSNHDE  289 (346)
Q Consensus       229 ---~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~----------------~i~iwd~~~~~~~~  289 (346)
                         .+..|.-+|+.+...  ..+. ...+...+..+++| .+++-=+.|.                .|+++++.......
T Consensus       259 ~~~~~~~i~~~d~~t~~~--~~~~-~~p~~~H~~ss~Dg-~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~  334 (386)
T PF14583_consen  259 PGGQDFWIAGYDPDTGER--RRLM-EMPWCSHFMSSPDG-KLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRK  334 (386)
T ss_dssp             TTT--EEEEEE-TTT--E--EEEE-EE-SEEEEEE-TTS-SEEEEEE-------------------EEEEEETTTTEEEE
T ss_pred             CCCCceEEEeeCCCCCCc--eEEE-eCCceeeeEEcCCC-CEEEecCCCCCccccccccceecCCcEEEEeccccCceee
Confidence               344566777776332  2221 11234455667888 7766544332                34555655410000


Q ss_pred             CCcccccCCccccccccccccccccc-eeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          290 LPSESLVESPNQRANSLLNSYSDYED-SVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      ..    .      -......+.++.. .=-...|+||++++|.+...+|...||-++
T Consensus       335 l~----~------h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~  381 (386)
T PF14583_consen  335 LA----R------HDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE  381 (386)
T ss_dssp             EE----E-------------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred             ee----e------ccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence            00    0      0000011111111 013478999999999999999988887653

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.27  E-value=0.00016  Score=65.36  Aligned_cols=111  Identities=14%  Similarity=0.146  Sum_probs=77.8

Q ss_pred             ccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcc
Q 019059           22 VKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPEL  101 (346)
Q Consensus        22 ~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~  101 (346)
                      .++.|...-|++.+++....|.+.++--..+.     ..-...+-.+.+++|+|..-.|+..    =.-|.+.+|...  
T Consensus        21 ~SWHPsePlfAVA~fS~er~GSVtIfadtGEP-----qr~Vt~P~hatSLCWHpe~~vLa~g----we~g~~~v~~~~--   89 (1416)
T KOG3617|consen   21 SSWHPSEPLFAVASFSPERGGSVTIFADTGEP-----QRDVTYPVHATSLCWHPEEFVLAQG----WEMGVSDVQKTN--   89 (1416)
T ss_pred             cccCCCCceeEEEEecCCCCceEEEEecCCCC-----CcccccceehhhhccChHHHHHhhc----cccceeEEEecC--
Confidence            44788888999999887777888776433321     1111233456779999965555443    466789999976  


Q ss_pred             cCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcC
Q 019059          102 YGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLD  151 (346)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~  151 (346)
                             ..+.-.....|..+|..+.||++|.. ++++-.-|.|.+|..+
T Consensus        90 -------~~e~htv~~th~a~i~~l~wS~~G~~-l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   90 -------TTETHTVVETHPAPIQGLDWSHDGTV-LMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             -------CceeeeeccCCCCCceeEEecCCCCe-EEEcCCCceeEEEEee
Confidence                   33333334578999999999999994 6666556899999876

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.26  E-value=0.0011  Score=57.86  Aligned_cols=168  Identities=10%  Similarity=0.030  Sum_probs=91.7

Q ss_pred             eEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceee
Q 019059           92 GAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYL  171 (346)
Q Consensus        92 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v  171 (346)
                      .|++|+..          ++++.++.-..+.|.++.|+.+..  +++-..||.++++|+....   .+..... .....|
T Consensus        62 ~I~iys~s----------G~ll~~i~w~~~~iv~~~wt~~e~--LvvV~~dG~v~vy~~~G~~---~fsl~~~-i~~~~v  125 (410)
T PF04841_consen   62 SIQIYSSS----------GKLLSSIPWDSGRIVGMGWTDDEE--LVVVQSDGTVRVYDLFGEF---QFSLGEE-IEEEKV  125 (410)
T ss_pred             EEEEECCC----------CCEeEEEEECCCCEEEEEECCCCe--EEEEEcCCEEEEEeCCCce---eechhhh-ccccCc
Confidence            58899875          566666655558999999998766  5555579999999986332   1111110 001122


Q ss_pred             -----EEEEeCCCCCcEEEEecCCeEEEEEccCCC-ccceee-------ccc----eeE-EEeCCCCCcEEEEecCCCeE
Q 019059          172 -----SGGAWDPHDVNAVAATCESSVQFWDLRSMG-KTNSIE-------HAH----VRN-VDYDTKKKHLLVTAADESGI  233 (346)
Q Consensus       172 -----~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~-------~~~----v~~-~~~~~~~~~~l~~~~~dg~i  233 (346)
                           ....+..+|  ++.-..++.+.+..--... ..+.+.       ..+    ... ..++.+.. ..+....++.+
T Consensus       126 ~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~-~~i~~~~g~~i  202 (410)
T PF04841_consen  126 LECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRV-VEILLANGETI  202 (410)
T ss_pred             ccccccccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcc-eEEEEecCCEE
Confidence                 222222233  3433445555444322211 111110       001    111 23344444 34444445566


Q ss_pred             EEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          234 HLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       234 ~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      .+.+-...    ..+. ..+++..++.||++ +++|.-..+|.+.+.+...
T Consensus       203 ~~i~~~~~----~~i~-~~~~i~~iavSpng-~~iAl~t~~g~l~v~ssDf  247 (410)
T PF04841_consen  203 YIIDENSF----KQID-SDGPIIKIAVSPNG-KFIALFTDSGNLWVVSSDF  247 (410)
T ss_pred             EEEEcccc----cccc-CCCCeEEEEECCCC-CEEEEEECCCCEEEEECcc
Confidence            64543321    1122 24689999999999 9999999999998887654

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.20  E-value=7.1e-05  Score=66.54  Aligned_cols=198  Identities=12%  Similarity=-0.025  Sum_probs=114.0

Q ss_pred             EeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec----CCeEEEEEccCCCc
Q 019059          127 LWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC----ESSVQFWDLRSMGK  202 (346)
Q Consensus       127 ~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~  202 (346)
                      =+.|||+.+...+-..+.+.+.|.++.+...++....      ....++++|+++++++++.    ..++...+......
T Consensus       199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg------npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~  272 (635)
T PRK02888        199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG------NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDW  272 (635)
T ss_pred             ccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC------CcccceECCCCCEEEEeccCcccCcceeeeccccCce
Confidence            3456676433333345777777877544333333322      4456789999999988863    23444444433222


Q ss_pred             cceeeccceeEEEeCCCCCcEEEEecCCCeEEEEEccc----CCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEE
Q 019059          203 TNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRM----LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVN  278 (346)
Q Consensus       203 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~  278 (346)
                      ...+....+  -++.++|++.++   .++.|.+.|.++    ....+..+ .-......+.++|||..+++++..+.+|.
T Consensus       273 ~vvfni~~i--ea~vkdGK~~~V---~gn~V~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGkylyVanklS~tVS  346 (635)
T PRK02888        273 VVVFNIARI--EEAVKAGKFKTI---GGSKVPVVDGRKAANAGSALTRYV-PVPKNPHGVNTSPDGKYFIANGKLSPTVT  346 (635)
T ss_pred             EEEEchHHH--HHhhhCCCEEEE---CCCEEEEEECCccccCCcceEEEE-ECCCCccceEECCCCCEEEEeCCCCCcEE
Confidence            222211101  144567874343   356899999886    22233333 34566788999999944455566689999


Q ss_pred             EEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          279 LWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       279 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      |.|+.+...-....     .  +.....+.+..--. .....+|.++|. .+.|.-.|..|-.|+++
T Consensus       347 VIDv~k~k~~~~~~-----~--~~~~~vvaevevGl-GPLHTaFDg~G~-aytslf~dsqv~kwn~~  404 (635)
T PRK02888        347 VIDVRKLDDLFDGK-----I--KPRDAVVAEPELGL-GPLHTAFDGRGN-AYTTLFLDSQIVKWNIE  404 (635)
T ss_pred             EEEChhhhhhhhcc-----C--CccceEEEeeccCC-CcceEEECCCCC-EEEeEeecceeEEEehH
Confidence            99998732100000     0  00011122222212 245678999986 88899999999999986

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.19  E-value=0.00068  Score=61.55  Aligned_cols=215  Identities=11%  Similarity=0.084  Sum_probs=122.0

Q ss_pred             CCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccc-eEEeeecCCCCceEEEEeecCCcc-eEEEEecCcc
Q 019059           24 ADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNE-IWDLSSCPFDQRIFSTVFSTGESY-GAAIWQIPEL  101 (346)
Q Consensus        24 ~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~~~~~~~~~d~-~i~vw~~~~~  101 (346)
                      +++.+.++++|+.    ++.|..+  +..-  .....+..++.. |..+-.-.+...|++.+-+..... .++||+++..
T Consensus        31 ~~s~~~~vvigt~----~G~V~~L--n~s~--~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~  102 (933)
T KOG2114|consen   31 CSSSTGSVVIGTA----DGRVVIL--NSSF--QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKV  102 (933)
T ss_pred             EcCCCceEEEeec----cccEEEe--cccc--eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccccc
Confidence            4556777777753    3444333  3321  122455556655 444433333345666542222122 7999999854


Q ss_pred             cCCCCCccceee--eeeec-----cCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCC--CCCceeeecccCCCceeeE
Q 019059          102 YGQLNSPQLERI--AALDA-----HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCS--NKNAQVQSKQSSGMLHYLS  172 (346)
Q Consensus       102 ~~~~~~~~~~~~--~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~--~~~~~~~~~~~~~~~~~v~  172 (346)
                      .+..+   .+++  ..+..     ...++.+++.+.+-+ .+++|-.+|.|..+.=+-.  ........   .....+|+
T Consensus       103 ~~n~s---P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~---~~~~~pIT  175 (933)
T KOG2114|consen  103 DKNNS---PQCLYEHRIFTIKNPTNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGDILRDRGSRQDYS---HRGKEPIT  175 (933)
T ss_pred             CCCCC---cceeeeeeeeccCCCCCCCcceEEEEEcccc-EEEEEecCcEEEEEcCcchhccccceeee---ccCCCCce
Confidence            32111   2232  12222     256788999998855 3666666899988864321  11111111   12244899


Q ss_pred             EEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeec
Q 019059          173 GGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP  249 (346)
Q Consensus       173 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  249 (346)
                      ++++..++..++.+..-..|.+|.+....+.......+   ++|..+++... -+++++. ..+.+||... ..+...+.
T Consensus       176 gL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~-qfIca~~-e~l~fY~sd~-~~~cfaf~  252 (933)
T KOG2114|consen  176 GLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTY-QFICAGS-EFLYFYDSDG-RGPCFAFE  252 (933)
T ss_pred             eeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCc-cEEEecC-ceEEEEcCCC-cceeeeec
Confidence            99999888884444455679999998554333322233   88999987665 4555544 4899999885 44666666


Q ss_pred             -CCCcceE
Q 019059          250 -GHTHWTW  256 (346)
Q Consensus       250 -~~~~~v~  256 (346)
                       +|.....
T Consensus       253 ~g~kk~~~  260 (933)
T KOG2114|consen  253 VGEKKEML  260 (933)
T ss_pred             CCCeEEEE
Confidence             6655443

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.17  E-value=4.1e-05  Score=70.42  Aligned_cols=134  Identities=10%  Similarity=0.099  Sum_probs=93.5

Q ss_pred             cCCeEEEEEccCCCccceeeccc-eeEEEeCCCCC------cEEEEecCCCeEEEEEcccCCcceeeec----CCCcceE
Q 019059          188 CESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKK------HLLVTAADESGIHLWDLRMLKAPIQELP----GHTHWTW  256 (346)
Q Consensus       188 ~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~------~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~~v~  256 (346)
                      ....|+-.|+..|+.+..+.... +.-..+.|+..      .-.+.|-.+..+..||.|-.+..+..-.    ......+
T Consensus       502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs  581 (794)
T PF08553_consen  502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS  581 (794)
T ss_pred             CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence            35789999999999998887544 43444444321      1345677788999999996443222111    2345678


Q ss_pred             EEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecC
Q 019059          257 AVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYD  336 (346)
Q Consensus       257 ~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  336 (346)
                      |++-+.+|  +||+|+.+|.||+||.-.                   ......+.+-..+|..|+.+.||+|+||||-  
T Consensus       582 ~~aTt~~G--~iavgs~~G~IRLyd~~g-------------------~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~--  638 (794)
T PF08553_consen  582 CFATTEDG--YIAVGSNKGDIRLYDRLG-------------------KRAKTALPGLGDPIIGIDVTADGKWILATCK--  638 (794)
T ss_pred             EEEecCCc--eEEEEeCCCcEEeecccc-------------------hhhhhcCCCCCCCeeEEEecCCCcEEEEeec--
Confidence            88877776  899999999999999543                   2334445666789999999999998777764  


Q ss_pred             CeEEEeee
Q 019059          337 GRVRNHML  344 (346)
Q Consensus       337 ~~v~vw~~  344 (346)
                      ..+.+++.
T Consensus       639 tyLlLi~t  646 (794)
T PF08553_consen  639 TYLLLIDT  646 (794)
T ss_pred             ceEEEEEE
Confidence            55666553

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.09  E-value=0.00089  Score=58.50  Aligned_cols=144  Identities=10%  Similarity=0.049  Sum_probs=80.9

Q ss_pred             ccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEc
Q 019059          118 AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDL  197 (346)
Q Consensus       118 ~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~  197 (346)
                      ...-....+.++|+|+.  ++-+.+|...++.....    ....      ......++|.+.++ +++-.....|.++.-
T Consensus        30 ~~~~~p~~ls~npngr~--v~V~g~geY~iyt~~~~----r~k~------~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn   96 (443)
T PF04053_consen   30 SCEIYPQSLSHNPNGRF--VLVCGDGEYEIYTALAW----RNKA------FGSGLSFVWSSRNR-YAVLESSSTIKIYKN   96 (443)
T ss_dssp             E-SS--SEEEE-TTSSE--EEEEETTEEEEEETTTT----EEEE------EEE-SEEEE-TSSE-EEEE-TTS-EEEEET
T ss_pred             CCCcCCeeEEECCCCCE--EEEEcCCEEEEEEccCC----cccc------cCceeEEEEecCcc-EEEEECCCeEEEEEc
Confidence            34445789999999994  33356899888883311    1111      12566788998444 666666888999743


Q ss_pred             cCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCe
Q 019059          198 RSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDST  276 (346)
Q Consensus       198 ~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~  276 (346)
                      -..+....+..+. +..|-.   |. +|...+. +.|.+||..+ .+.+..+..  .+|..|.|++++ .+++..+.+ .
T Consensus        97 ~~~~~~k~i~~~~~~~~If~---G~-LL~~~~~-~~i~~yDw~~-~~~i~~i~v--~~vk~V~Ws~~g-~~val~t~~-~  166 (443)
T PF04053_consen   97 FKNEVVKSIKLPFSVEKIFG---GN-LLGVKSS-DFICFYDWET-GKLIRRIDV--SAVKYVIWSDDG-ELVALVTKD-S  166 (443)
T ss_dssp             TEE-TT-----SS-EEEEE----SS-SEEEEET-TEEEEE-TTT---EEEEESS---E-EEEEE-TTS-SEEEEE-S--S
T ss_pred             CccccceEEcCCcccceEEc---Cc-EEEEECC-CCEEEEEhhH-cceeeEEec--CCCcEEEEECCC-CEEEEEeCC-e
Confidence            3344434455443 555543   76 6666555 4899999997 557777763  348999999999 888888865 6


Q ss_pred             EEEEecCC
Q 019059          277 VNLWLVST  284 (346)
Q Consensus       277 i~iwd~~~  284 (346)
                      +.|++.+.
T Consensus       167 i~il~~~~  174 (443)
T PF04053_consen  167 IYILKYNL  174 (443)
T ss_dssp             EEEEEE-H
T ss_pred             EEEEEecc
Confidence            88887665

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.06  E-value=0.003  Score=53.47  Aligned_cols=189  Identities=10%  Similarity=0.091  Sum_probs=105.4

Q ss_pred             cceEEEeecccCC-----C-CeEEEEEecCC---CCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEec
Q 019059           28 HTSFLTGTLSLKE-----E-NEVHLLRLSSG---GTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQI   98 (346)
Q Consensus        28 ~~~~~~g~~~~~~-----~-~~i~~~~~~~~---~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~   98 (346)
                      ...+++|+.....     . |.++++++...   ...+........+++|.+++-.  +.+++++     ....|.+|++
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~lv~~-----~g~~l~v~~l  114 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGRLVVA-----VGNKLYVYDL  114 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTEEEEE-----ETTEEEEEEE
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCEEEEe-----ecCEEEEEEc
Confidence            6788888764431     2 88999999884   2344444445567899998877  3346665     3468999999


Q ss_pred             CcccCCCCCcc-ceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeC
Q 019059           99 PELYGQLNSPQ-LERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWD  177 (346)
Q Consensus        99 ~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~  177 (346)
                      ..       .. ......+.. ...+.++...  ++ .++++.....+.++..+.............  ....++++.+-
T Consensus       115 ~~-------~~~l~~~~~~~~-~~~i~sl~~~--~~-~I~vgD~~~sv~~~~~~~~~~~l~~va~d~--~~~~v~~~~~l  181 (321)
T PF03178_consen  115 DN-------SKTLLKKAFYDS-PFYITSLSVF--KN-YILVGDAMKSVSLLRYDEENNKLILVARDY--QPRWVTAAEFL  181 (321)
T ss_dssp             ET-------TSSEEEEEEE-B-SSSEEEEEEE--TT-EEEEEESSSSEEEEEEETTTE-EEEEEEES--S-BEEEEEEEE
T ss_pred             cC-------cccchhhheecc-eEEEEEEecc--cc-EEEEEEcccCEEEEEEEccCCEEEEEEecC--CCccEEEEEEe
Confidence            82       12 222222222 2245555544  44 366665567777776654222222222221  24478888888


Q ss_pred             CCCCcEEEEecCCeEEEEEccCC-------C-ccc---eeeccc-eeEE---EeCC--CCCc-----EEEEecCCCeEEE
Q 019059          178 PHDVNAVAATCESSVQFWDLRSM-------G-KTN---SIEHAH-VRNV---DYDT--KKKH-----LLVTAADESGIHL  235 (346)
Q Consensus       178 ~~~~~l~~~~~d~~i~i~d~~~~-------~-~~~---~~~~~~-v~~~---~~~~--~~~~-----~l~~~~~dg~i~i  235 (346)
                      ++++.++++..+|.+.++.....       . .+.   .+..+. |+++   .+.|  .+..     .++.++.+|.|..
T Consensus       182 ~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~  261 (321)
T PF03178_consen  182 VDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV  261 (321)
T ss_dssp             -SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred             cCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence            66678888888999999887631       1 111   222222 7777   6555  2221     3677778888874


Q ss_pred             E
Q 019059          236 W  236 (346)
Q Consensus       236 ~  236 (346)
                      .
T Consensus       262 l  262 (321)
T PF03178_consen  262 L  262 (321)
T ss_dssp             E
T ss_pred             E
Confidence            4

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.01  E-value=0.0062  Score=52.75  Aligned_cols=196  Identities=17%  Similarity=0.120  Sum_probs=125.2

Q ss_pred             ceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEe-cCCeEEEEEccCC
Q 019059          122 KINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT-CESSVQFWDLRSM  200 (346)
Q Consensus       122 ~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~  200 (346)
                      ....+...+++..+.++......+...+.. ..   ........+ ......++.++.+..+++.. .+..|.+.|..+.
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n---~~~~~~~~g-~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~  106 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SN---TVTQSLSVG-GVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATN  106 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccc-cc---eeeeeccCC-CccccceeeCCCCCeEEEecCCCCeEEEEcCccc
Confidence            556778888887655555444445444443 11   111111001 02446778888888666655 4689999998888


Q ss_pred             Cccceeeccc-eeEEEeCCCCCcEEEEec--CCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeE
Q 019059          201 GKTNSIEHAH-VRNVDYDTKKKHLLVTAA--DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTV  277 (346)
Q Consensus       201 ~~~~~~~~~~-v~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i  277 (346)
                      +.......+. ...++++|++..+.++-.  .++.+.+.|..+ .........-..+ ..++++|+|....++-..++.|
T Consensus       107 ~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t-~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v  184 (381)
T COG3391         107 TVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT-NKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTV  184 (381)
T ss_pred             ceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCC-CeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeE
Confidence            8888777676 999999999985666655  368899999886 3344444332334 8899999994355555578999


Q ss_pred             EEEecCCCCCCCCCcccccCCcccccccccc-----ccccccceeeEEEeCCCCCcEEEEeecC--CeEEEeee
Q 019059          278 NLWLVSTSNHDELPSESLVESPNQRANSLLN-----SYSDYEDSVYGLAWSSREPWIFASLSYD--GRVRNHML  344 (346)
Q Consensus       278 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~l~s~~~d--~~v~vw~~  344 (346)
                      .+.|.+.                   .....     ...... ....+.++|++.+..++...+  +.+...|.
T Consensus       185 ~vi~~~~-------------------~~v~~~~~~~~~~~~~-~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~  238 (381)
T COG3391         185 SVIDTSG-------------------NSVVRGSVGSLVGVGT-GPAGIAVDPDGNRVYVANDGSGSNNVLKIDT  238 (381)
T ss_pred             EEEeCCC-------------------cceeccccccccccCC-CCceEEECCCCCEEEEEeccCCCceEEEEeC
Confidence            9999776                   22221     111122 246788999998555555544  46665554

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.99  E-value=0.0025  Score=54.94  Aligned_cols=242  Identities=10%  Similarity=0.100  Sum_probs=114.9

Q ss_pred             eeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEec
Q 019059           19 ISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQI   98 (346)
Q Consensus        19 ~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~   98 (346)
                      |..+.+..+...|++|.    ..|++.++++...+..- ..    -...-..+.+.+-.          .+++.-.+-|+
T Consensus         4 v~~vs~a~~t~Elav~~----~~GeVv~~k~~~n~~~~-~~----~~~~~~~~~~~~~~----------~~~~~~~l~di   64 (395)
T PF08596_consen    4 VTHVSFAPETLELAVGL----ESGEVVLFKFGKNQNYG-NR----EQPPDLDYNFRRFS----------LNNSPGKLTDI   64 (395)
T ss_dssp             EEEEEEETTTTEEEEEE----TTS-EEEEEEEE-----------------------S------------GGGSS-SEEE-
T ss_pred             EEEEEecCCCceEEEEc----cCCcEEEEEcccCCCCC-cc----CCCcccCccccccc----------ccCCCcceEEe
Confidence            45566677888898885    45788888877642211 00    00111122222210          12222234444


Q ss_pred             CcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecc---cCCCceeeEEEE
Q 019059           99 PELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQ---SSGMLHYLSGGA  175 (346)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~---~~~~~~~v~~~~  175 (346)
                      ..+..........+..-+....++|++++.|.-|  +++++..+|.+.|.|++...-........   .......++++.
T Consensus        65 ~~r~~~~~~~gf~P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ie  142 (395)
T PF08596_consen   65 SDRAPPSLKEGFLPLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIE  142 (395)
T ss_dssp             GGG--TT-SEEEEEEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEE
T ss_pred             hhhCCcccccccCchhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEE
Confidence            4332222222356666666778999999998666  36677789999999998654332222111   111233566676


Q ss_pred             eC-----CCC---CcEEEEecCCeEEEEEccC-CCccce--ee------ccceeEEE-eCCC-C----------------
Q 019059          176 WD-----PHD---VNAVAATCESSVQFWDLRS-MGKTNS--IE------HAHVRNVD-YDTK-K----------------  220 (346)
Q Consensus       176 ~~-----~~~---~~l~~~~~d~~i~i~d~~~-~~~~~~--~~------~~~v~~~~-~~~~-~----------------  220 (346)
                      |.     .|+   ..+++|.+.|.+.+|.+.- ..-...  +.      .+.+..|. ++.+ +                
T Consensus       143 F~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g  222 (395)
T PF08596_consen  143 FSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKG  222 (395)
T ss_dssp             EEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT
T ss_pred             EEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccC
Confidence            64     222   3588888899999998752 111111  10      01122221 2111 0                


Q ss_pred             ---CcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeC-----CCCCcEEEEecCCCeEEEEecCC
Q 019059          221 ---KHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCN-----PEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       221 ---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~-----~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                         +.+++ ...+..++++...+.+...+.+ ........+.+-     ..+ ..|++-..+|.|++|.+..
T Consensus       223 ~~i~g~vV-vvSe~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~-~~Lv~l~~~G~i~i~SLP~  291 (395)
T PF08596_consen  223 ISIPGYVV-VVSESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGG-YCLVCLFNNGSIRIYSLPS  291 (395)
T ss_dssp             ----EEEE-EE-SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEE-EEEEEEETTSEEEEEETTT
T ss_pred             CCcCcEEE-EEcccceEEEeCCCCcccceee-ccccccceEEEEeecccCCc-eEEEEEECCCcEEEEECCC
Confidence               11333 3345789999988644333333 222233334442     244 7888889999999999986

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.99  E-value=0.0038  Score=51.66  Aligned_cols=198  Identities=14%  Similarity=0.183  Sum_probs=111.2

Q ss_pred             EeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEE
Q 019059           70 DLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWS  149 (346)
Q Consensus        70 ~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd  149 (346)
                      .++++.++++++..-.  .-...|.|-|+.         ..+.+..+....    |...-|.++.-+.+-|.||.+.-..
T Consensus        99 ~~~ls~dgk~~~V~N~--TPa~SVtVVDl~---------~~kvv~ei~~PG----C~~iyP~~~~~F~~lC~DGsl~~v~  163 (342)
T PF06433_consen   99 MFALSADGKFLYVQNF--TPATSVTVVDLA---------AKKVVGEIDTPG----CWLIYPSGNRGFSMLCGDGSLLTVT  163 (342)
T ss_dssp             GEEE-TTSSEEEEEEE--SSSEEEEEEETT---------TTEEEEEEEGTS----EEEEEEEETTEEEEEETTSCEEEEE
T ss_pred             ceEEccCCcEEEEEcc--CCCCeEEEEECC---------CCceeeeecCCC----EEEEEecCCCceEEEecCCceEEEE
Confidence            4567777777776532  233467788877         455555553221    2222344433366668899999999


Q ss_pred             cCCCCCCceeeecccCCCceee-EEEEeCCCCCcEEEEecCCeEEEEEccCCCccc--eee------------ccceeEE
Q 019059          150 LDCSNKNAQVQSKQSSGMLHYL-SGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN--SIE------------HAHVRNV  214 (346)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--~~~------------~~~v~~~  214 (346)
                      ++...+........+.....++ ..-++...+..++..+.+|.|+-.|+.......  .+.            ++--.-+
T Consensus       164 Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~  243 (342)
T PF06433_consen  164 LDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLI  243 (342)
T ss_dssp             ETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-E
T ss_pred             ECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeee
Confidence            9854443322221111111122 222344445556667889999988887654221  111            0114557


Q ss_pred             EeCCCCCcEEEEe--c-----CCC--eEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEe-cCCCeEEEEecCC
Q 019059          215 DYDTKKKHLLVTA--A-----DES--GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSA-GTDSTVNLWLVST  284 (346)
Q Consensus       215 ~~~~~~~~~l~~~--~-----~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~-~~d~~i~iwd~~~  284 (346)
                      ++++....+++.-  +     .|+  .|.++|+.+ ++.+..+.. ..++.+|..+.+...+|++. ..++.+.+||..+
T Consensus       244 A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t-~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t  321 (342)
T PF06433_consen  244 AYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKT-HKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAAT  321 (342)
T ss_dssp             EEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTT-TEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT
T ss_pred             eeccccCeEEEEecCCCCCCccCCceEEEEEECCC-CeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcC
Confidence            7776655233321  1     122  467778876 555666653 45688999998885677654 5589999999999

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.97  E-value=2.1e-05  Score=70.77  Aligned_cols=108  Identities=10%  Similarity=0.145  Sum_probs=86.3

Q ss_pred             EEEeCCCCCcEEEEe----cCCeEEEEEccCCCccceeecc-ceeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceee
Q 019059          173 GGAWDPHDVNAVAAT----CESSVQFWDLRSMGKTNSIEHA-HVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQE  247 (346)
Q Consensus       173 ~~~~~~~~~~l~~~~----~d~~i~i~d~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  247 (346)
                      -..|+|..+.+++++    ..|.|.|| ..+|++-+....+ |+++++|+|..- +|+.|-.-|.+.+|.... +..-..
T Consensus        20 i~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~P~hatSLCWHpe~~-vLa~gwe~g~~~v~~~~~-~e~htv   96 (1416)
T KOG3617|consen   20 ISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVTYPVHATSLCWHPEEF-VLAQGWEMGVSDVQKTNT-TETHTV   96 (1416)
T ss_pred             ccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccccceehhhhccChHHH-HHhhccccceeEEEecCC-ceeeee
Confidence            347999999888776    36888887 4566665554433 389999999875 888888899999999875 434445


Q ss_pred             ecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          248 LPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       248 ~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      ...|+.+|..+.|||+| ..++++..-|.|.+|....
T Consensus        97 ~~th~a~i~~l~wS~~G-~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   97 VETHPAPIQGLDWSHDG-TVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             ccCCCCCceeEEecCCC-CeEEEcCCCceeEEEEeee
Confidence            56799999999999999 9999999999999997763

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.91  E-value=0.0076  Score=53.05  Aligned_cols=197  Identities=11%  Similarity=0.069  Sum_probs=103.9

Q ss_pred             eEEEEeecCCCCcEEEEecC----CeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecC---------
Q 019059          123 INCVLWWSSGRHDKLVSIDE----ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE---------  189 (346)
Q Consensus       123 i~~~~~~~~~~~~~~~~~~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------  189 (346)
                      +....++|++++++++-+..    ..++++|+.+++.........      ....+.|.++++.++....+         
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~------~~~~~~W~~d~~~~~y~~~~~~~~~~~~~  199 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP------KFSSVSWSDDGKGFFYTRFDEDQRTSDSG  199 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE------ESEEEEECTTSSEEEEEECSTTTSS-CCG
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc------ccceEEEeCCCCEEEEEEeCcccccccCC
Confidence            44678899999755554443    459999999874332222111      22349999998887776532         


Q ss_pred             --CeEEEEEccCCCcc--ceeeccc----eeEEEeCCCCCcEEEEecCC---CeEEEEEcccC---CcceeeecCCCcce
Q 019059          190 --SSVQFWDLRSMGKT--NSIEHAH----VRNVDYDTKKKHLLVTAADE---SGIHLWDLRML---KAPIQELPGHTHWT  255 (346)
Q Consensus       190 --~~i~i~d~~~~~~~--~~~~~~~----v~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~---~~~~~~~~~~~~~v  255 (346)
                        ..|+.|.+.+....  ..+....    ...+..+++++++++.....   ..+.+.|+...   ......+......+
T Consensus       200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~  279 (414)
T PF02897_consen  200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGV  279 (414)
T ss_dssp             CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-
T ss_pred             CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCce
Confidence              23777887766543  2222111    45788999999666554433   35778887753   22344444334344


Q ss_pred             E-EEEeCCCCCcEEEEecC---CCeEEEEecCCCCCCCCCcccccCCccccccccccccccccc--eeeEEEeCCCCCcE
Q 019059          256 W-AVCCNPEYDGFILSAGT---DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYED--SVYGLAWSSREPWI  329 (346)
Q Consensus       256 ~-~v~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~  329 (346)
                      . .+... .+ .+++....   ++.|.-.++.....                ......+..+..  .+..+...  +.++
T Consensus       280 ~~~v~~~-~~-~~yi~Tn~~a~~~~l~~~~l~~~~~----------------~~~~~~l~~~~~~~~l~~~~~~--~~~L  339 (414)
T PF02897_consen  280 EYYVDHH-GD-RLYILTNDDAPNGRLVAVDLADPSP----------------AEWWTVLIPEDEDVSLEDVSLF--KDYL  339 (414)
T ss_dssp             EEEEEEE-TT-EEEEEE-TT-TT-EEEEEETTSTSG----------------GGEEEEEE--SSSEEEEEEEEE--TTEE
T ss_pred             EEEEEcc-CC-EEEEeeCCCCCCcEEEEeccccccc----------------ccceeEEcCCCCceeEEEEEEE--CCEE
Confidence            3 34333 33 34443322   35666667665100                001113333433  35555554  3457


Q ss_pred             EEEeecCCe--EEEeeec
Q 019059          330 FASLSYDGR--VRNHMLE  345 (346)
Q Consensus       330 l~s~~~d~~--v~vw~~~  345 (346)
                      ++..-.++.  |+++++.
T Consensus       340 vl~~~~~~~~~l~v~~~~  357 (414)
T PF02897_consen  340 VLSYRENGSSRLRVYDLD  357 (414)
T ss_dssp             EEEEEETTEEEEEEEETT
T ss_pred             EEEEEECCccEEEEEECC
Confidence            777766665  5555553

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.90  E-value=0.005  Score=49.34  Aligned_cols=164  Identities=13%  Similarity=0.231  Sum_probs=106.4

Q ss_pred             eeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeecc-CCceEEEEeecCCCCcEEEE
Q 019059           61 LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH-VGKINCVLWWSSGRHDKLVS  139 (346)
Q Consensus        61 ~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~  139 (346)
                      +.+-...|.++.|+|+.+.|+++.    +...-.||-..         +++.++++.-. -..--.+.|..+|+  ++.+
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~----n~p~~iVElt~---------~GdlirtiPL~g~~DpE~Ieyig~n~--fvi~  145 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVT----NKPAAIVELTK---------EGDLIRTIPLTGFSDPETIEYIGGNQ--FVIV  145 (316)
T ss_pred             cccccccccceeeCCCcceEEEec----CCCceEEEEec---------CCceEEEecccccCChhHeEEecCCE--EEEE
Confidence            345556699999999999999983    33333344332         57777776422 22345778888777  4555


Q ss_pred             -ecCCeEEEEEcCCCCCCceeee-----cccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccce--------
Q 019059          140 -IDEENIFLWSLDCSNKNAQVQS-----KQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNS--------  205 (346)
Q Consensus       140 -~~d~~i~vwd~~~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--------  205 (346)
                       -.++.+.++.++.+........     ...........+++|.|....++++-...-+.||..........        
T Consensus       146 dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~  225 (316)
T COG3204         146 DERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPT  225 (316)
T ss_pred             ehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcc
Confidence             5588898888875533222211     11112255789999999999999988777677766553331111        


Q ss_pred             ----eeccceeEEEeCCCCCcEEEEecCCCeEEEEEcc
Q 019059          206 ----IEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLR  239 (346)
Q Consensus       206 ----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  239 (346)
                          +....+.++.|++....+++-+.+++.+.-.|..
T Consensus       226 ~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~  263 (316)
T COG3204         226 ADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS  263 (316)
T ss_pred             cccceEeeccccceecCCCCcEEEEecCCceEEEEecC
Confidence                1101188899998777688888888888888876

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.90  E-value=0.00016  Score=61.96  Aligned_cols=141  Identities=9%  Similarity=0.067  Sum_probs=97.6

Q ss_pred             CCcEEEE-ecCCeEEEEEccCCCccceeeccc-eeEEEeCCCCCc------EEEEecCCCeEEEEEcccCCc-ceeeecC
Q 019059          180 DVNAVAA-TCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKH------LLVTAADESGIHLWDLRMLKA-PIQELPG  250 (346)
Q Consensus       180 ~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~------~l~~~~~dg~i~i~d~~~~~~-~~~~~~~  250 (346)
                      .+.|+.. .....|+-.|++.|+.+....... |+-+.+.|+...      --+.|-.+..|.-||+|-.+. .+...+.
T Consensus       345 snlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~  424 (644)
T KOG2395|consen  345 SNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQS  424 (644)
T ss_pred             cceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeec
Confidence            3444433 345678889999999988887555 888888887642      123466788999999985443 2222223


Q ss_pred             CC----cceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCC
Q 019059          251 HT----HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSRE  326 (346)
Q Consensus       251 ~~----~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  326 (346)
                      |.    ....|.+-..+|  ++++||.+|.||+||.-.                   ......+++-..+|..|..+.+|
T Consensus       425 kqy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdri~-------------------~~AKTAlPgLG~~I~hVdvtadG  483 (644)
T KOG2395|consen  425 KQYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDRIG-------------------RRAKTALPGLGDAIKHVDVTADG  483 (644)
T ss_pred             cccccccccceeeecCCc--eEEEeecCCcEEeehhhh-------------------hhhhhcccccCCceeeEEeeccC
Confidence            32    345566655555  899999999999999854                   44455677788899999999999


Q ss_pred             CcEEEEeecCCeEEEee
Q 019059          327 PWIFASLSYDGRVRNHM  343 (346)
Q Consensus       327 ~~~l~s~~~d~~v~vw~  343 (346)
                      +++|+||  +..+.+-+
T Consensus       484 Kwil~Tc--~tyLlLi~  498 (644)
T KOG2395|consen  484 KWILATC--KTYLLLID  498 (644)
T ss_pred             cEEEEec--ccEEEEEE
Confidence            9777665  34555444

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.83  E-value=2.9e-05  Score=59.26  Aligned_cols=141  Identities=10%  Similarity=0.051  Sum_probs=85.1

Q ss_pred             EEEEecCCeEEEEEccCCCccceeeccceeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEE-eC
Q 019059          183 AVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVC-CN  261 (346)
Q Consensus       183 l~~~~~d~~i~i~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~-~~  261 (346)
                      +...+.++.|+-++++..+....-..- +.+.---+....-+++|+.+|.|++|.....+.....+..-...|.+.- --
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse~~-~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~  111 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSERF-IDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNG  111 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhhhh-hhcceeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccccc
Confidence            455566888888877754422111111 2222111122226889999999999987743332222222233333332 22


Q ss_pred             CCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccccccc-ceeeEEEeCCCCCcEEEEe--ecCCe
Q 019059          262 PEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYE-DSVYGLAWSSREPWIFASL--SYDGR  338 (346)
Q Consensus       262 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~--~~d~~  338 (346)
                      .++ .+.++++.|+.|+.|++..                   .+.+.....|. .++..+..+..++ .++..  |.|..
T Consensus       112 ~~~-~~~c~~~~dg~ir~~n~~p-------------------~k~~g~~g~h~~~~~e~~ivv~sd~-~i~~a~~S~d~~  170 (238)
T KOG2444|consen  112 RDS-SLGCVGAQDGRIRACNIKP-------------------NKVLGYVGQHNFESGEELIVVGSDE-FLKIADTSHDRV  170 (238)
T ss_pred             ccc-ceeEEeccCCceeeecccc-------------------CceeeeeccccCCCcceeEEecCCc-eEEeeccccchh
Confidence            233 5889999999999999987                   66666666666 4555555555554 66666  78888


Q ss_pred             EEEeeec
Q 019059          339 VRNHMLE  345 (346)
Q Consensus       339 v~vw~~~  345 (346)
                      ++.|+++
T Consensus       171 ~k~W~ve  177 (238)
T KOG2444|consen  171 LKKWNVE  177 (238)
T ss_pred             hhhcchh
Confidence            8888875

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.81  E-value=0.014  Score=48.48  Aligned_cols=274  Identities=11%  Similarity=0.023  Sum_probs=142.0

Q ss_pred             cceEEEeeccc-CCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEE--eecC----CcceEEEEecCc
Q 019059           28 HTSFLTGTLSL-KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTV--FSTG----ESYGAAIWQIPE  100 (346)
Q Consensus        28 ~~~~~~g~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~--~~~~----~d~~i~vw~~~~  100 (346)
                      .+|+.+..... .-..++++++-+.  +++.=..-.+   -.-.+..+|+++.+.++.  ++-+    ..-.|.+||.. 
T Consensus         2 ~~rvyV~D~~~~~~~~rv~viD~d~--~k~lGmi~~g---~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~-   75 (342)
T PF06433_consen    2 AHRVYVQDPVFFHMTSRVYVIDADS--GKLLGMIDTG---FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQ-   75 (342)
T ss_dssp             TTEEEEEE-GGGGSSEEEEEEETTT--TEEEEEEEEE---SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETT-
T ss_pred             CcEEEEECCccccccceEEEEECCC--CcEEEEeecc---cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecC-
Confidence            34555554322 1235677776444  3332222112   223366799999887642  3322    34469999988 


Q ss_pred             ccCCCCCccceeeeeeeccC-------CceEEEEeecCCCCcEEEE-ecCCeEEEEEcCCCCCCceeeecccCCCceeeE
Q 019059          101 LYGQLNSPQLERIAALDAHV-------GKINCVLWWSSGRHDKLVS-IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLS  172 (346)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~~~~~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~  172 (346)
                              +..+...+.-..       .....+.++.+++++++.- +-...|.|.|+...+-..++...       .+.
T Consensus        76 --------TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-------GC~  140 (342)
T PF06433_consen   76 --------TLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP-------GCW  140 (342)
T ss_dssp             --------TTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT-------SEE
T ss_pred             --------cCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC-------CEE
Confidence                    455544332221       1223457788888644444 34678888888865433333221       222


Q ss_pred             EEEeCCCCCcEEEEecCCeEEEEEcc-CCCccceee----ccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCc-
Q 019059          173 GGAWDPHDVNAVAATCESSVQFWDLR-SMGKTNSIE----HAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA-  243 (346)
Q Consensus       173 ~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~----~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-  243 (346)
                      .+-=.+ .+.+.+.|.||.+....+. .|+......    ...   ...-++...+. .++--+.+|.|+-.|+..... 
T Consensus       141 ~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~-~~~F~Sy~G~v~~~dlsg~~~~  218 (342)
T PF06433_consen  141 LIYPSG-NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGG-RLYFVSYEGNVYSADLSGDSAK  218 (342)
T ss_dssp             EEEEEE-TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTT-EEEEEBTTSEEEEEEETTSSEE
T ss_pred             EEEecC-CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCC-eEEEEecCCEEEEEeccCCccc
Confidence            222122 2457788899999998888 444432211    011   22333333333 333356778888888875321 


Q ss_pred             ceeeecCC----------CcceEEEEeCCCCCcEEEEecC--------CC--eEEEEecCCCCCCCCCcccccCCccccc
Q 019059          244 PIQELPGH----------THWTWAVCCNPEYDGFILSAGT--------DS--TVNLWLVSTSNHDELPSESLVESPNQRA  303 (346)
Q Consensus       244 ~~~~~~~~----------~~~v~~v~~~~~~~~~l~s~~~--------d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~  303 (346)
                      ....+..-          .+.-.-+++++.. ..|++.-.        |+  .|-++|+.+                   
T Consensus       219 ~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~-~rlyvLMh~g~~gsHKdpgteVWv~D~~t-------------------  278 (342)
T PF06433_consen  219 FGKPWSLLTDAEKADGWRPGGWQLIAYHAAS-GRLYVLMHQGGEGSHKDPGTEVWVYDLKT-------------------  278 (342)
T ss_dssp             EEEEEESS-HHHHHTTEEE-SSS-EEEETTT-TEEEEEEEE--TT-TTS-EEEEEEEETTT-------------------
T ss_pred             ccCcccccCccccccCcCCcceeeeeecccc-CeEEEEecCCCCCCccCCceEEEEEECCC-------------------
Confidence            11111110          0122335566544 33333211        22  466667777                   


Q ss_pred             cccccccccccceeeEEEeCCCCCcEEEEe-ecCCeEEEeeec
Q 019059          304 NSLLNSYSDYEDSVYGLAWSSREPWIFASL-SYDGRVRNHMLE  345 (346)
Q Consensus       304 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~d~~v~vw~~~  345 (346)
                      .+.+..+.. ..++.+|..+.+.+-+|.+. ..++.+.+||..
T Consensus       279 ~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~  320 (342)
T PF06433_consen  279 HKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAA  320 (342)
T ss_dssp             TEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETT
T ss_pred             CeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCc
Confidence            777777763 34588999988765456544 568999999864

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.79  E-value=0.006  Score=53.27  Aligned_cols=183  Identities=13%  Similarity=-0.057  Sum_probs=98.8

Q ss_pred             CCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCC
Q 019059           77 DQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKN  156 (346)
Q Consensus        77 ~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~  156 (346)
                      +..++++    +.++.+.-+|.+         +++.+=+.... ..+.+--.-.++.  +++...++.+.-+|..+++..
T Consensus       120 ~~~v~v~----~~~g~l~ald~~---------tG~~~W~~~~~-~~~~ssP~v~~~~--v~v~~~~g~l~ald~~tG~~~  183 (394)
T PRK11138        120 GGKVYIG----SEKGQVYALNAE---------DGEVAWQTKVA-GEALSRPVVSDGL--VLVHTSNGMLQALNESDGAVK  183 (394)
T ss_pred             CCEEEEE----cCCCEEEEEECC---------CCCCcccccCC-CceecCCEEECCE--EEEECCCCEEEEEEccCCCEe
Confidence            3445553    577888888876         44444333222 1222111112333  566666889999999988766


Q ss_pred             ceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---------eeEEEeCC--CCCcEEE
Q 019059          157 AQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---------VRNVDYDT--KKKHLLV  225 (346)
Q Consensus       157 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---------v~~~~~~~--~~~~~l~  225 (346)
                      .+...............-..  .+..++.+..++.+..+|..+++.........         ...+.-+|  .+. .++
T Consensus       184 W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~-~vy  260 (394)
T PRK11138        184 WTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGG-VVY  260 (394)
T ss_pred             eeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECC-EEE
Confidence            55543210000000000111  12357777788999999999887655432110         01111222  233 456


Q ss_pred             EecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          226 TAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       226 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      .++.+|.+..+|..+.+ .+-....  .....+..  .+ ..++.++.++.+..+|..+
T Consensus       261 ~~~~~g~l~ald~~tG~-~~W~~~~--~~~~~~~~--~~-~~vy~~~~~g~l~ald~~t  313 (394)
T PRK11138        261 ALAYNGNLVALDLRSGQ-IVWKREY--GSVNDFAV--DG-GRIYLVDQNDRVYALDTRG  313 (394)
T ss_pred             EEEcCCeEEEEECCCCC-EEEeecC--CCccCcEE--EC-CEEEEEcCCCeEEEEECCC
Confidence            66778999999998743 3322211  11111222  34 5677778899999999987

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.78  E-value=0.0048  Score=49.45  Aligned_cols=170  Identities=11%  Similarity=0.089  Sum_probs=108.8

Q ss_pred             CCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccC
Q 019059          165 SGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRML  241 (346)
Q Consensus       165 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  241 (346)
                      .+....+.++.|+|+.+.|++..+...-.++=...|+.++++....   ...|++..++. +.++--.++.+.++.+...
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~-fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQ-FVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCE-EEEEehhcceEEEEEEcCC
Confidence            3445569999999999999999988877777777788888776333   77788888776 5666666788888876643


Q ss_pred             Ccc---------eeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccccc
Q 019059          242 KAP---------IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD  312 (346)
Q Consensus       242 ~~~---------~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (346)
                      ...         +......+...-.++|+|.. ..|..+-+-.-+.||.+..............       ......+  
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~-------~~~~~~~--  230 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSPSSLSVHASLD-------PTADRDL--  230 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCC-ceEEEEEccCCcEEEEEecCCcccccccccC-------cccccce--
Confidence            211         11111124567889999999 7777777777788887764111110000000       0000000  


Q ss_pred             ccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          313 YEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       313 ~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      .-..|.++.|++....+|+-+.+++.+.-.+++
T Consensus       231 f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~  263 (316)
T COG3204         231 FVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS  263 (316)
T ss_pred             EeeccccceecCCCCcEEEEecCCceEEEEecC
Confidence            112367888887666677777777777666554

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.78  E-value=0.0094  Score=50.44  Aligned_cols=135  Identities=10%  Similarity=0.089  Sum_probs=81.3

Q ss_pred             CeEEEEEcCCC-CCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCC-ccceeec-cc--eeEEEeC
Q 019059          143 ENIFLWSLDCS-NKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG-KTNSIEH-AH--VRNVDYD  217 (346)
Q Consensus       143 ~~i~vwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~-~~--v~~~~~~  217 (346)
                      |.|.++++... ....++..........+|++++-- ++ .++++ .++.|.+|++...+ ....-.. ..  +.++...
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~  138 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF  138 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEe-ecCEEEEEEccCcccchhhheecceEEEEEEecc
Confidence            88999999873 111122211111223477777655 33 34444 35889999999887 3222221 22  6666655


Q ss_pred             CCCCcEEEEecCCCeEEEEEcccCCcceeeec--CCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          218 TKKKHLLVTAADESGIHLWDLRMLKAPIQELP--GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       218 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                        ++ ++++|.....+.++..+.....+..+.  .....++++.|-+++ ..++.+..+|.+.++....
T Consensus       139 --~~-~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  139 --KN-YILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDE-DTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             --TT-EEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SS-SEEEEEETTSEEEEEEE-S
T ss_pred             --cc-EEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCC-cEEEEEcCCCeEEEEEECC
Confidence              44 788888888888886654232233332  235668888888787 6899999999999998864

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.77  E-value=0.00015  Score=63.34  Aligned_cols=91  Identities=14%  Similarity=0.091  Sum_probs=72.5

Q ss_pred             eeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceee-ccc-ee-EEEeCCCCCcEEEEecCCCeEEEEEcccCCccee
Q 019059          170 YLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE-HAH-VR-NVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQ  246 (346)
Q Consensus       170 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~-v~-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  246 (346)
                      .+.-+.|+|.-..+|.+..+|.|.+..+. -+++.++. ++. ++ +++|.|||+ ++++|-.||+|++.|+.+......
T Consensus        22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEccCCCceec
Confidence            57788999999999999999999998888 66677776 344 55 999999998 999999999999999998553333


Q ss_pred             eecCCCcceEEEEeCC
Q 019059          247 ELPGHTHWTWAVCCNP  262 (346)
Q Consensus       247 ~~~~~~~~v~~v~~~~  262 (346)
                      ....-...|.++-|++
T Consensus       100 ~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen  100 FLFSVETDISKGIWDR  115 (665)
T ss_pred             cccccccchheeeccc
Confidence            2233456778887864

>smart00320 WD40 WD40 repeats

Probab=97.76  E-value=8.6e-05  Score=39.97  Aligned_cols=37  Identities=32%  Similarity=0.525  Sum_probs=32.9

Q ss_pred             ceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEe
Q 019059          244 PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWL  281 (346)
Q Consensus       244 ~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd  281 (346)
                      ++..+..|...|.++.|++.+ .++++++.|+.+++|+
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence            456667788999999999998 8999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.74  E-value=0.00021  Score=62.49  Aligned_cols=70  Identities=16%  Similarity=0.304  Sum_probs=61.6

Q ss_pred             eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceE-EEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          211 VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTW-AVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       211 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~-~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      +.-+.|+|.-+ ++|.+..+|.+-+..+.  .+.+-++..|...++ +++|.||| ++||.|=.||+|++.|..+
T Consensus        23 i~~~ewnP~~d-LiA~~t~~gelli~R~n--~qRlwtip~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~Dve~   93 (665)
T KOG4640|consen   23 IKRIEWNPKMD-LIATRTEKGELLIHRLN--WQRLWTIPIPGENVTASLCWRPDG-KLLAVGFKDGTIRLHDVEK   93 (665)
T ss_pred             eEEEEEcCccc-hhheeccCCcEEEEEec--cceeEeccCCCCccceeeeecCCC-CEEEEEecCCeEEEEEccC
Confidence            88899999998 99999999998888776  335667776777777 99999999 9999999999999999998

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.73  E-value=0.00037  Score=61.80  Aligned_cols=113  Identities=10%  Similarity=0.021  Sum_probs=84.6

Q ss_pred             eeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceee-ccc--eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCccee
Q 019059          170 YLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE-HAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQ  246 (346)
Q Consensus       170 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  246 (346)
                      .+.--+++..+++++.|+.-|.+++|+...++....-. ..+  +.....+++.. +++.|+..|.|.++-+.+...+-.
T Consensus        35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~-lvAagt~~g~V~v~ql~~~~p~~~  113 (726)
T KOG3621|consen   35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEY-LVAAGTASGRVSVFQLNKELPRDL  113 (726)
T ss_pred             eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhH-hhhhhcCCceEEeehhhccCCCcc
Confidence            44445666678999999999999999987765433222 123  55666777775 899999999999998876322222


Q ss_pred             ee-----cCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          247 EL-----PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       247 ~~-----~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      .+     +.|...|++++|++++ ..+++|..-|+|.+-.+.+
T Consensus       114 ~~~t~~d~~~~~rVTal~Ws~~~-~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  114 DYVTPCDKSHKCRVTALEWSKNG-MKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             eeeccccccCCceEEEEEecccc-cEEeecCCCceEEEEEech
Confidence            21     2367889999999999 9999999999998887776

>smart00320 WD40 WD40 repeats

Probab=97.72  E-value=7.2e-05  Score=40.29  Aligned_cols=38  Identities=26%  Similarity=0.297  Sum_probs=32.1

Q ss_pred             ccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEee
Q 019059          305 SLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHM  343 (346)
Q Consensus       305 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~  343 (346)
                      ++...+..|...|.++.|++.+. ++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGK-YLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence            44555667888899999999886 899999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.70  E-value=0.0058  Score=41.62  Aligned_cols=99  Identities=18%  Similarity=0.190  Sum_probs=66.1

Q ss_pred             EeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCccc
Q 019059          215 DYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSES  294 (346)
Q Consensus       215 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  294 (346)
                      .|.-+|..-|++|++|..|++|+-.   ..+..+.. ...|+++.-...  ..|+.+-.+|+|-+|+...          
T Consensus         9 d~d~dg~~eLlvGs~D~~IRvf~~~---e~~~Ei~e-~~~v~~L~~~~~--~~F~Y~l~NGTVGvY~~~~----------   72 (111)
T PF14783_consen    9 DFDGDGENELLVGSDDFEIRVFKGD---EIVAEITE-TDKVTSLCSLGG--GRFAYALANGTVGVYDRSQ----------   72 (111)
T ss_pred             ecCCCCcceEEEecCCcEEEEEeCC---cEEEEEec-ccceEEEEEcCC--CEEEEEecCCEEEEEeCcc----------
Confidence            3455666789999999999999854   35666664 456777765554  4688899999999998764          


Q ss_pred             ccCCccccccccccccccccceeeEEEe---CCCCCcEEEEeecCCeEEE
Q 019059          295 LVESPNQRANSLLNSYSDYEDSVYGLAW---SSREPWIFASLSYDGRVRN  341 (346)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~l~s~~~d~~v~v  341 (346)
                                .. -..+.... +.++.+   ..+|..-|++|-.+|.|-+
T Consensus        73 ----------Rl-WRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   73 ----------RL-WRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             ----------ee-eeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence                      22 22222222 455444   3345456888888888753

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.69  E-value=0.0018  Score=56.76  Aligned_cols=150  Identities=14%  Similarity=0.240  Sum_probs=93.1

Q ss_pred             CCceEEEEeecCCCCcEEEEe--cCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCC----CCcEEEEecCCeEE
Q 019059          120 VGKINCVLWWSSGRHDKLVSI--DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPH----DVNAVAATCESSVQ  193 (346)
Q Consensus       120 ~~~i~~~~~~~~~~~~~~~~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~d~~i~  193 (346)
                      -.++..++|. ||++++++.-  .+|.+++=|-.       +.     +....|.++.|.|-    ...+++.-....|.
T Consensus        19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds~-------vi-----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVt   85 (671)
T PF15390_consen   19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDSK-------VI-----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVT   85 (671)
T ss_pred             hccccceEec-CCCEEEEEeeeeeCCccccCCcc-------Ee-----eccceeeeeeecCcccCCCCceEEEeccceEE
Confidence            4578899996 6776566552  34554443322       11     12236899999886    34677778889999


Q ss_pred             EEEccC-----CCccce----eeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeC
Q 019059          194 FWDLRS-----MGKTNS----IEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCN  261 (346)
Q Consensus       194 i~d~~~-----~~~~~~----~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~  261 (346)
                      +|.+..     .+....    +....   .....|+|... +|++-.....--+++++.....++.=-...+-|.|.+|.
T Consensus        86 VWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~-iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT  164 (671)
T PF15390_consen   86 VWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA-ILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWT  164 (671)
T ss_pred             EEEeccCccccccceeeeeeeccCCcccCCCcccccCCCc-eEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEec
Confidence            999862     121111    11111   67889999998 665544433334667765444443322456789999999


Q ss_pred             CCCCcEEEEecCCCeEEEEecC
Q 019059          262 PEYDGFILSAGTDSTVNLWLVS  283 (346)
Q Consensus       262 ~~~~~~l~s~~~d~~i~iwd~~  283 (346)
                      +||.+++++.+..=.-+|||-.
T Consensus       165 ~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  165 KDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             CcCCEEEEEeCCeEEEEEecCc
Confidence            9996666665555567788753

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.69  E-value=0.003  Score=49.52  Aligned_cols=113  Identities=7%  Similarity=-0.031  Sum_probs=77.1

Q ss_pred             eecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceee
Q 019059          128 WWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE  207 (346)
Q Consensus       128 ~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  207 (346)
                      ..++.+.+++.++..+.+.--|..+++...+.....      .+.+-+.- -+..++.|+..|.+++.+.++|.....+.
T Consensus        18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~------RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~   90 (354)
T KOG4649|consen   18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGV------RIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFV   90 (354)
T ss_pred             EecCCceEEEEecCCceEEEecCCCCcEEeehhhCc------eeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeee
Confidence            334445556677777888888888776544443322      23222222 36779999999999999999998777666


Q ss_pred             ccc-e-eEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeec
Q 019059          208 HAH-V-RNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP  249 (346)
Q Consensus       208 ~~~-v-~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  249 (346)
                      ... | ......+++. ++..|+.|++.+..|.++ ...+...+
T Consensus        91 ~~~~vk~~a~~d~~~g-lIycgshd~~~yalD~~~-~~cVyksk  132 (354)
T KOG4649|consen   91 ILETVKVRAQCDFDGG-LIYCGSHDGNFYALDPKT-YGCVYKSK  132 (354)
T ss_pred             ehhhhccceEEcCCCc-eEEEecCCCcEEEecccc-cceEEecc
Confidence            433 2 2334567777 999999999999999997 43555544

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.64  E-value=0.00049  Score=61.02  Aligned_cols=118  Identities=14%  Similarity=0.146  Sum_probs=80.6

Q ss_pred             eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCC
Q 019059          211 VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDEL  290 (346)
Q Consensus       211 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  290 (346)
                      +.--+++..++ .++.|+.-|.+++|+-...........+....+..+..+++. .++|.|+..|.|.++-++.....+.
T Consensus        36 v~lTc~dst~~-~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e-~lvAagt~~g~V~v~ql~~~~p~~~  113 (726)
T KOG3621|consen   36 VKLTCVDATEE-YLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVE-YLVAAGTASGRVSVFQLNKELPRDL  113 (726)
T ss_pred             EEEEEeecCCc-eEEEecccceEEEEecCchhhhcccccCccceEEEEEecchh-HhhhhhcCCceEEeehhhccCCCcc
Confidence            33334445566 788899999999999664222223333344556667788888 8999999999999998876211110


Q ss_pred             CcccccCCccccccccccc-cccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          291 PSESLVESPNQRANSLLNS-YSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                                    ..+.. -+.|...|++++|++++. .+.+|...|.|..-.|+
T Consensus       114 --------------~~~t~~d~~~~~rVTal~Ws~~~~-k~ysGD~~Gkv~~~~L~  154 (726)
T KOG3621|consen  114 --------------DYVTPCDKSHKCRVTALEWSKNGM-KLYSGDSQGKVVLTELD  154 (726)
T ss_pred             --------------eeeccccccCCceEEEEEeccccc-EEeecCCCceEEEEEec
Confidence                          11111 123777899999999997 88999999998876654

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.61  E-value=0.011  Score=53.94  Aligned_cols=188  Identities=11%  Similarity=0.090  Sum_probs=100.7

Q ss_pred             cceEEeeecCCCCceEEEEee--cCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEec--
Q 019059           66 NEIWDLSSCPFDQRIFSTVFS--TGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSID--  141 (346)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~--~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--  141 (346)
                      ..+.+.+++|+++.++++...  ...|+.-.||-.+.        .... ..+..- .....-.|+|+|..+.++...  
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~--------gg~~-~~lt~g-~~~t~PsWspDG~~lw~v~dg~~  419 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL--------GGVA-VQVLEG-HSLTRPSWSLDADAVWVVVDGNT  419 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC--------CCcc-eeeecC-CCCCCceECCCCCceEEEecCcc
Confidence            467889999999998887421  11244445554431        1111 222121 237788999998864444321  


Q ss_pred             ---------CCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEE---EEccCCC-cc---ce
Q 019059          142 ---------EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQF---WDLRSMG-KT---NS  205 (346)
Q Consensus       142 ---------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i---~d~~~~~-~~---~~  205 (346)
                               .+.+.+.+++.+....        .....|..+.|+|||..++... ++.|++   -....+. .+   ..
T Consensus       420 ~~~v~~~~~~gql~~~~vd~ge~~~--------~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~  490 (591)
T PRK13616        420 VVRVIRDPATGQLARTPVDASAVAS--------RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPRE  490 (591)
T ss_pred             eEEEeccCCCceEEEEeccCchhhh--------ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEE
Confidence                     1233333333222111        1123799999999999988876 477777   4434443 11   11


Q ss_pred             eecc--c-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecC--CCcceEEEEeCCCCCcEEEEecCCCeE
Q 019059          206 IEHA--H-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG--HTHWTWAVCCNPEYDGFILSAGTDSTV  277 (346)
Q Consensus       206 ~~~~--~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~v~~v~~~~~~~~~l~s~~~d~~i  277 (346)
                      +...  . +.++.|.+++. ++ ++..++...+|.+.-.+.....+..  ...++..|+=++.   -++....++.+
T Consensus       491 l~~~l~~~~~~l~W~~~~~-L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~---~iyv~~~~g~~  562 (591)
T PRK13616        491 VGPGLGDTAVSLDWRTGDS-LV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS---TVYVTDARAVL  562 (591)
T ss_pred             eecccCCccccceEecCCE-EE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc---eEEEEcCCceE
Confidence            2211  1 68899999997 44 4444444445554432322222222  2456777776653   35555556633

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.55  E-value=0.034  Score=45.88  Aligned_cols=227  Identities=12%  Similarity=0.131  Sum_probs=118.9

Q ss_pred             CCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCC
Q 019059           25 DTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQ  104 (346)
Q Consensus        25 ~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~  104 (346)
                      ...+.++++|+    ++| ++++++..........    +...|..+...|+-+.+++.     .|+.+.+++++.....
T Consensus         4 ~~~~~~L~vGt----~~G-l~~~~~~~~~~~~~i~----~~~~I~ql~vl~~~~~llvL-----sd~~l~~~~L~~l~~~   69 (275)
T PF00780_consen    4 DSWGDRLLVGT----EDG-LYVYDLSDPSKPTRIL----KLSSITQLSVLPELNLLLVL-----SDGQLYVYDLDSLEPV   69 (275)
T ss_pred             ccCCCEEEEEE----CCC-EEEEEecCCccceeEe----ecceEEEEEEecccCEEEEE-----cCCccEEEEchhhccc
Confidence            44678899986    334 8888883332222222    23349999999988877776     5689999999843221


Q ss_pred             CCCccce-e-----eeeeeccCCceEEEE--eecCCCCcEEEEecCCeEEEEEcCCCCCC--ceeeecccCCCceeeEEE
Q 019059          105 LNSPQLE-R-----IAALDAHVGKINCVL--WWSSGRHDKLVSIDEENIFLWSLDCSNKN--AQVQSKQSSGMLHYLSGG  174 (346)
Q Consensus       105 ~~~~~~~-~-----~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~d~~i~vwd~~~~~~~--~~~~~~~~~~~~~~v~~~  174 (346)
                      ....... .     ...+ .....+...+  -...+.. .++......|.+|........  .....-.   ....+..+
T Consensus        70 ~~~~~~~~~~~~~~~~~~-~~~~~v~~f~~~~~~~~~~-~L~va~kk~i~i~~~~~~~~~f~~~~ke~~---lp~~~~~i  144 (275)
T PF00780_consen   70 STSAPLAFPKSRSLPTKL-PETKGVSFFAVNGGHEGSR-RLCVAVKKKILIYEWNDPRNSFSKLLKEIS---LPDPPSSI  144 (275)
T ss_pred             cccccccccccccccccc-cccCCeeEEeeccccccce-EEEEEECCEEEEEEEECCcccccceeEEEE---cCCCcEEE
Confidence            1100000 0     0011 1122334433  1123332 444444669999988764221  1222222   12378888


Q ss_pred             EeCCCCCcEEEEecCCeEEEEEccCCCccceeec-------------cc-eeEEEeCCCCCcEEEEecCCCeEEEEEccc
Q 019059          175 AWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH-------------AH-VRNVDYDTKKKHLLVTAADESGIHLWDLRM  240 (346)
Q Consensus       175 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-------------~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  240 (346)
                      +|.  ++.++.+..+ ...+.|+.++.....+..             .+ +..+.. +++. +|++-  +..-.+.|.. 
T Consensus       145 ~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e-~Ll~~--~~~g~fv~~~-  216 (275)
T PF00780_consen  145 AFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNE-FLLCY--DNIGVFVNKN-  216 (275)
T ss_pred             EEe--CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCce-EEEEe--cceEEEEcCC-
Confidence            888  4566666544 477889886654322210             01 333333 3344 45443  2233333433 


Q ss_pred             CCccee--eecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          241 LKAPIQ--ELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       241 ~~~~~~--~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                       +.+.+  .+. -...+.++++..   .+|+..+. +.|.||++.+
T Consensus       217 -G~~~r~~~i~-W~~~p~~~~~~~---pyli~~~~-~~iEV~~~~~  256 (275)
T PF00780_consen  217 -GEPSRKSTIQ-WSSAPQSVAYSS---PYLIAFSS-NSIEVRSLET  256 (275)
T ss_pred             -CCcCcccEEE-cCCchhEEEEEC---CEEEEECC-CEEEEEECcC
Confidence             22222  232 234556666643   45666555 5599999998

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.55  E-value=0.0077  Score=52.15  Aligned_cols=145  Identities=13%  Similarity=0.116  Sum_probs=93.4

Q ss_pred             eecCCCCcEEEE-ecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCC-------cEEEEecCCeEEEEEccC
Q 019059          128 WWSSGRHDKLVS-IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDV-------NAVAATCESSVQFWDLRS  199 (346)
Q Consensus       128 ~~~~~~~~~~~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~d~~i~i~d~~~  199 (346)
                      ...+.+ +++.. .....++-.|++.++....-....      .|+-+.+.|+.+       .-+.|-.+..|.-||.|-
T Consensus       341 ~~~dsn-lil~~~~~~~~l~klDIE~GKIVeEWk~~~------di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv  413 (644)
T KOG2395|consen  341 HRADSN-LILMDGGEQDKLYKLDIERGKIVEEWKFED------DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRV  413 (644)
T ss_pred             hccccc-eEeeCCCCcCcceeeecccceeeeEeeccC------CcceeeccCCcchhcccccccEEeecCCceEEecccc
Confidence            333444 34433 445667777777665433322221      355556666543       245566788999999984


Q ss_pred             CCc-cceeeccc-------eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEe
Q 019059          200 MGK-TNSIEHAH-------VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSA  271 (346)
Q Consensus       200 ~~~-~~~~~~~~-------v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~  271 (346)
                      ... .......|       ..|.+-..+|  .+++|+.+|.|++||- ...+....+.+...+|..|..+.+| .+|+..
T Consensus       414 ~~~~kl~~~q~kqy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadG-Kwil~T  489 (644)
T KOG2395|consen  414 QGKNKLAVVQSKQYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADG-KWILAT  489 (644)
T ss_pred             cCcceeeeeeccccccccccceeeecCCc--eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccC-cEEEEe
Confidence            332 22222222       7788777777  6899999999999996 3355566678888999999999999 555443


Q ss_pred             cCCCeEEEEecCC
Q 019059          272 GTDSTVNLWLVST  284 (346)
Q Consensus       272 ~~d~~i~iwd~~~  284 (346)
                      + +..+.+-++.-
T Consensus       490 c-~tyLlLi~t~~  501 (644)
T KOG2395|consen  490 C-KTYLLLIDTLI  501 (644)
T ss_pred             c-ccEEEEEEEec
Confidence            3 56777777764

>PRK10115 protease 2; Provisional

Probab=97.53  E-value=0.081  Score=49.67  Aligned_cols=200  Identities=9%  Similarity=0.039  Sum_probs=105.5

Q ss_pred             cceEEeeecCCCCceEEEEeecC-CcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecC--
Q 019059           66 NEIWDLSSCPFDQRIFSTVFSTG-ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDE--  142 (346)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d--  142 (346)
                      -.+..+.|+|++++|+.+...+| ....|++-|+.         ++..+...-...  -..++|.+|++.++++...+  
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~---------tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~  195 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLE---------TGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVT  195 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECC---------CCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCC
Confidence            34677899999998888764433 34568888886         333221111111  14689999998766665422  


Q ss_pred             ---CeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec---CCeEEEEEcc--CCCccceeeccc--ee
Q 019059          143 ---ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC---ESSVQFWDLR--SMGKTNSIEHAH--VR  212 (346)
Q Consensus       143 ---~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~i~d~~--~~~~~~~~~~~~--v~  212 (346)
                         ..|+.+++.++............. ... ..+..+.++++++..+.   ++.+.+++..  .+.....+....  ..
T Consensus       196 ~~~~~v~~h~lgt~~~~d~lv~~e~~~-~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  273 (686)
T PRK10115        196 LLPYQVWRHTIGTPASQDELVYEEKDD-TFY-VSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEY  273 (686)
T ss_pred             CCCCEEEEEECCCChhHCeEEEeeCCC-CEE-EEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEE
Confidence               478888888774333333222111 112 23334447777665543   4678888853  333222222222  33


Q ss_pred             EEEeCCCCCcEEEEecCC---CeEEEEEcccCCcceeeecCC-C-cceEEEEeCCCCCcEEEEecCCCeEEEEecC
Q 019059          213 NVDYDTKKKHLLVTAADE---SGIHLWDLRMLKAPIQELPGH-T-HWTWAVCCNPEYDGFILSAGTDSTVNLWLVS  283 (346)
Q Consensus       213 ~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~-~-~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~  283 (346)
                      .+. +..+. +++....+   ..|...++.... ....+..+ . ..+..+.++. + .++++...++.-+++-+.
T Consensus       274 ~~~-~~~~~-ly~~tn~~~~~~~l~~~~~~~~~-~~~~l~~~~~~~~i~~~~~~~-~-~l~~~~~~~g~~~l~~~~  344 (686)
T PRK10115        274 SLD-HYQHR-FYLRSNRHGKNFGLYRTRVRDEQ-QWEELIPPRENIMLEGFTLFT-D-WLVVEERQRGLTSLRQIN  344 (686)
T ss_pred             EEE-eCCCE-EEEEEcCCCCCceEEEecCCCcc-cCeEEECCCCCCEEEEEEEEC-C-EEEEEEEeCCEEEEEEEc
Confidence            332 33333 44333322   234444444212 23344444 2 3677777773 3 677777778866665544

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.47  E-value=0.0062  Score=53.50  Aligned_cols=149  Identities=11%  Similarity=0.125  Sum_probs=89.1

Q ss_pred             eeeEEEEeCCCCCcEEEEe---cCCeEEEEEccCCCccceeeccceeEEEeCCC----CCcEEEEecCCCeEEEEEcccC
Q 019059          169 HYLSGGAWDPHDVNAVAAT---CESSVQFWDLRSMGKTNSIEHAHVRNVDYDTK----KKHLLVTAADESGIHLWDLRML  241 (346)
Q Consensus       169 ~~v~~~~~~~~~~~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~  241 (346)
                      .++.+++|. ||+.++...   .+|.+++=|-   +.+..|  +||..+.|.|-    -+ .+++....+.|.+|.+...
T Consensus        20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds---~viGqF--EhV~GlsW~P~~~~~~p-aLLAVQHkkhVtVWqL~~s   92 (671)
T PF15390_consen   20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS---KVIGQF--EHVHGLSWAPPCTADTP-ALLAVQHKKHVTVWQLCPS   92 (671)
T ss_pred             ccccceEec-CCCEEEEEeeeeeCCccccCCc---cEeecc--ceeeeeeecCcccCCCC-ceEEEeccceEEEEEeccC
Confidence            378899998 566555433   2344433221   122222  45999999986    33 3444556689999987621


Q ss_pred             C----cceeee-cCC--Ccc--eEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccccc
Q 019059          242 K----APIQEL-PGH--THW--TWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD  312 (346)
Q Consensus       242 ~----~~~~~~-~~~--~~~--v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (346)
                      .    +.+..- -..  .-+  ...+.|+|.. ..|+.-.....-.+++++.                  ....++.--.
T Consensus        93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~-~iL~VLT~~dvSV~~sV~~------------------d~srVkaDi~  153 (671)
T PF15390_consen   93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKK-AILTVLTARDVSVLPSVHC------------------DSSRVKADIK  153 (671)
T ss_pred             ccccccceeeeeeeccCCcccCCCcccccCCC-ceEEEEecCceeEeeeeee------------------CCceEEEecc
Confidence            1    111111 011  111  2356799998 7777666555444667765                  1233332223


Q ss_pred             ccceeeEEEeCCCCCcEEEEeecCCeEEEee
Q 019059          313 YEDSVYGLAWSSREPWIFASLSYDGRVRNHM  343 (346)
Q Consensus       313 ~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~  343 (346)
                      ..+-|.|.+|.+||++++++.+..=.-++||
T Consensus       154 ~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd  184 (671)
T PF15390_consen  154 TSGLIHCACWTKDGQRLVVAVGSSLHSYIWD  184 (671)
T ss_pred             CCceEEEEEecCcCCEEEEEeCCeEEEEEec
Confidence            4566999999999998888888766678887

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.47  E-value=0.057  Score=46.35  Aligned_cols=205  Identities=11%  Similarity=0.187  Sum_probs=92.8

Q ss_pred             EEEEe-cCCeEEEEEcCCCCCCceeeecc-------cCCCceeeEEEEeCCCCCcEEEEec------CCeEEEEEccCCC
Q 019059          136 KLVSI-DEENIFLWSLDCSNKNAQVQSKQ-------SSGMLHYLSGGAWDPHDVNAVAATC------ESSVQFWDLRSMG  201 (346)
Q Consensus       136 ~~~~~-~d~~i~vwd~~~~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~i~d~~~~~  201 (346)
                      +++.+ ..+.|+|.|+.+.-...++....       ..+ ......+..-|+|+.++++-.      .|.+.++|-++.+
T Consensus        90 Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g-~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~  168 (461)
T PF05694_consen   90 LILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTG-LSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFE  168 (461)
T ss_dssp             EEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH--EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--
T ss_pred             EEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcC-CCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcccc
Confidence            45544 68999999998544333222111       011 122344455678888887643      2568888888776


Q ss_pred             ccceeeccc-----eeEEEeCCCCCcEEEEec--------------------CCCeEEEEEcccCCcceeeecCCC--cc
Q 019059          202 KTNSIEHAH-----VRNVDYDTKKKHLLVTAA--------------------DESGIHLWDLRMLKAPIQELPGHT--HW  254 (346)
Q Consensus       202 ~~~~~~~~~-----v~~~~~~~~~~~~l~~~~--------------------~dg~i~i~d~~~~~~~~~~~~~~~--~~  254 (346)
                      .........     -..+-|.|..+ ++++..                    ...++++||+.+ +++++++.--.  ..
T Consensus       169 v~g~We~~~~~~~~gYDfw~qpr~n-vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~-r~~~Q~idLg~~g~~  246 (461)
T PF05694_consen  169 VKGRWEKDRGPQPFGYDFWYQPRHN-VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWST-RKLLQTIDLGEEGQM  246 (461)
T ss_dssp             EEEE--SB-TT------EEEETTTT-EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTT-TEEEEEEES-TTEEE
T ss_pred             ccceeccCCCCCCCCCCeEEcCCCC-EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCC-CcEeeEEecCCCCCc
Confidence            665554322     67788888776 666643                    235799999997 66777776433  23


Q ss_pred             eEEEEeC--CCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccc-----cccccccccccccceeeEEEeCCCCC
Q 019059          255 TWAVCCN--PEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQ-----RANSLLNSYSDYEDSVYGLAWSSREP  327 (346)
Q Consensus       255 v~~v~~~--~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~  327 (346)
                      ...|+|.  |+...-++.+....+|..|-......  -..+.....+.+     ...+.++.+..-..-|++|..|.|.+
T Consensus       247 pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~--W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr  324 (461)
T PF05694_consen  247 PLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGE--WAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR  324 (461)
T ss_dssp             EEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTE--EEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred             eEEEEecCCCCccceEEEEeccceEEEEEEcCCCC--eeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence            5566664  44423344444455555554422100  000000000000     00122233333345689999999999


Q ss_pred             cEEEEeecCCeEEEeeec
Q 019059          328 WIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       328 ~~l~s~~~d~~v~vw~~~  345 (346)
                      ++.+++-.+|.||.||++
T Consensus       325 fLYvs~W~~GdvrqYDIS  342 (461)
T PF05694_consen  325 FLYVSNWLHGDVRQYDIS  342 (461)
T ss_dssp             EEEEEETTTTEEEEEE-S
T ss_pred             EEEEEcccCCcEEEEecC
Confidence            888888899999999986

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.45  E-value=0.012  Score=49.69  Aligned_cols=166  Identities=11%  Similarity=0.110  Sum_probs=87.1

Q ss_pred             eeeeccccceEEeeecCCCCceEEEEeecCCcce-EEEEecCcccCCCCCccceeeeeeecc--CCceEEEEeecCCCCc
Q 019059           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYG-AAIWQIPELYGQLNSPQLERIAALDAH--VGKINCVLWWSSGRHD  135 (346)
Q Consensus        59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~-i~vw~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~  135 (346)
                      +.+..-...+..+.|+|..+.+++-|..|..+.. -++|-+..        .+.....+..+  ...+..=-|.|||..+
T Consensus       181 ~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~--------dg~~~~~v~~~~~~e~~gHEfw~~DG~~i  252 (386)
T PF14583_consen  181 KVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINT--------DGSNVKKVHRRMEGESVGHEFWVPDGSTI  252 (386)
T ss_dssp             EEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEET--------TS---EESS---TTEEEEEEEE-TTSS-E
T ss_pred             eEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEc--------CCCcceeeecCCCCcccccccccCCCCEE
Confidence            3444455677889999999999999988888764 48888763        22222222222  2334445689999987


Q ss_pred             EEEEe----cCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCC----------------eEEEE
Q 019059          136 KLVSI----DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCES----------------SVQFW  195 (346)
Q Consensus       136 ~~~~~----~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----------------~i~i~  195 (346)
                      ...+.    .+..|.-+|+.+++.. .+....      ....+--++++++++-=+.|.                -|+++
T Consensus       253 ~y~~~~~~~~~~~i~~~d~~t~~~~-~~~~~p------~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~  325 (386)
T PF14583_consen  253 WYDSYTPGGQDFWIAGYDPDTGERR-RLMEMP------WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLF  325 (386)
T ss_dssp             EEEEEETTT--EEEEEE-TTT--EE-EEEEE-------SEEEEEE-TTSSEEEEEE-------------------EEEEE
T ss_pred             EEEeecCCCCceEEEeeCCCCCCce-EEEeCC------ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEe
Confidence            77653    2345667777765432 121111      344555677777554433332                46677


Q ss_pred             EccCCCccceee--------ccc----eeEEEeCCCCCcEEEEecCCCeEEEEEcc
Q 019059          196 DLRSMGKTNSIE--------HAH----VRNVDYDTKKKHLLVTAADESGIHLWDLR  239 (346)
Q Consensus       196 d~~~~~~~~~~~--------~~~----v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  239 (346)
                      ++..++......        .++    -..+.|+||++.+|+++...|...||=+.
T Consensus       326 ~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~  381 (386)
T PF14583_consen  326 DVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE  381 (386)
T ss_dssp             ETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred             ccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence            777655321111        111    45689999999888888888887777544

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.42  E-value=0.012  Score=40.17  Aligned_cols=101  Identities=13%  Similarity=0.117  Sum_probs=64.1

Q ss_pred             eEEEEe---ecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccC
Q 019059          123 INCVLW---WSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRS  199 (346)
Q Consensus       123 i~~~~~---~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~  199 (346)
                      |+++++   ..+|..-++++++|..|++|+-+.  ...+...      ...+..+.-... ..++.+..+|+|-+|+-..
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~Ei~e------~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~   72 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVAEITE------TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ   72 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEEEEec------ccceEEEEEcCC-CEEEEEecCCEEEEEeCcc
Confidence            444544   456666799999999999998652  2222222      226777776654 5588888899999997643


Q ss_pred             CCccceeeccc-eeEEEe---CCCCCcEEEEecCCCeEE
Q 019059          200 MGKTNSIEHAH-VRNVDY---DTKKKHLLVTAADESGIH  234 (346)
Q Consensus       200 ~~~~~~~~~~~-v~~~~~---~~~~~~~l~~~~~dg~i~  234 (346)
                        .+-.++..+ +.++++   .-+|..-|++|-.+|.|-
T Consensus        73 --RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   73 --RLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             --eeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence              233333333 444443   444544688888888874

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.38  E-value=0.015  Score=45.86  Aligned_cols=100  Identities=12%  Similarity=0.012  Sum_probs=69.4

Q ss_pred             CcEEEEecCCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEE
Q 019059          181 VNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVC  259 (346)
Q Consensus       181 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~  259 (346)
                      .+++.++..+.+.--|..+|+.......+. +.+-+.- -|+ .++.|...|.+++.+..+ +..+..+..-..-=....
T Consensus        24 T~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgd-fVV~GCy~g~lYfl~~~t-Gs~~w~f~~~~~vk~~a~  100 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGD-FVVLGCYSGGLYFLCVKT-GSQIWNFVILETVKVRAQ  100 (354)
T ss_pred             eEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECC-EEEEEEccCcEEEEEecc-hhheeeeeehhhhccceE
Confidence            456677778888888998888665433233 3333322 355 688899999999999988 434555543222112334


Q ss_pred             eCCCCCcEEEEecCCCeEEEEecCC
Q 019059          260 CNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       260 ~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      ..+++ .++..|+.|+..+..|.++
T Consensus       101 ~d~~~-glIycgshd~~~yalD~~~  124 (354)
T KOG4649|consen  101 CDFDG-GLIYCGSHDGNFYALDPKT  124 (354)
T ss_pred             EcCCC-ceEEEecCCCcEEEecccc
Confidence            67788 8999999999999999998

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.37  E-value=0.01  Score=54.22  Aligned_cols=101  Identities=10%  Similarity=-0.025  Sum_probs=61.6

Q ss_pred             eeEEEEeCCCCCcEEEEe------cCC--eEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCC----------
Q 019059          170 YLSGGAWDPHDVNAVAAT------CES--SVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADE----------  230 (346)
Q Consensus       170 ~v~~~~~~~~~~~l~~~~------~d~--~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~d----------  230 (346)
                      .+...+++|+++.++...      .|.  .|.+++.  +.....+..+. ...-.|+|+|. .+++....          
T Consensus       351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~--gg~~~~lt~g~~~t~PsWspDG~-~lw~v~dg~~~~~v~~~~  427 (591)
T PRK13616        351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL--GGVAVQVLEGHSLTRPSWSLDAD-AVWVVVDGNTVVRVIRDP  427 (591)
T ss_pred             CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC--CCcceeeecCCCCCCceECCCCC-ceEEEecCcceEEEeccC
Confidence            678889999999887765      243  5555564  22224444344 88999999987 44444322          


Q ss_pred             --CeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEE
Q 019059          231 --SGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNL  279 (346)
Q Consensus       231 --g~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~i  279 (346)
                        +.+.+.+++. .....   .....|..+.||||| ..++... ++.|.+
T Consensus       428 ~~gql~~~~vd~-ge~~~---~~~g~Issl~wSpDG-~RiA~i~-~g~v~V  472 (591)
T PRK13616        428 ATGQLARTPVDA-SAVAS---RVPGPISELQLSRDG-VRAAMII-GGKVYL  472 (591)
T ss_pred             CCceEEEEeccC-chhhh---ccCCCcCeEEECCCC-CEEEEEE-CCEEEE
Confidence              2333333332 11111   235679999999999 6665544 467766

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.36  E-value=0.052  Score=43.55  Aligned_cols=203  Identities=10%  Similarity=0.065  Sum_probs=112.8

Q ss_pred             eeeeccccceEEeeecCCCCceEEEEee-cCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEE
Q 019059           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFS-TGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKL  137 (346)
Q Consensus        59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~-~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  137 (346)
                      +.+++|.      .|||+|..|.++-.+ ...-|.|-|||...        ..+.+-.+..|.-.-..+.|.+||+.+++
T Consensus       113 RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r~--------~fqrvgE~~t~GiGpHev~lm~DGrtlvv  178 (366)
T COG3490         113 RHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDARE--------GFQRVGEFSTHGIGPHEVTLMADGRTLVV  178 (366)
T ss_pred             ceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEeccc--------ccceecccccCCcCcceeEEecCCcEEEE
Confidence            3455664      589999999887411 11236799999873        45667778788777789999999995444


Q ss_pred             EEe------cCC-----------eEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec-----CCeEEEE
Q 019059          138 VSI------DEE-----------NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-----ESSVQFW  195 (346)
Q Consensus       138 ~~~------~d~-----------~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~i~  195 (346)
                      +.+      .-|           ++.+.|..+++...+.... ...+...+..++..+|+..++..-.     |---.+=
T Consensus       179 anGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp-~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg  257 (366)
T COG3490         179 ANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLP-ASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVG  257 (366)
T ss_pred             eCCceecccccCccccchhhcCccEEEEeccccchhhhccCc-hhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCccee
Confidence            433      001           1222332333222211111 1123446777888877765544432     2112222


Q ss_pred             EccCCCccceeecc--------c-eeEEEeCCCCCcEEEEec-CCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCC
Q 019059          196 DLRSMGKTNSIEHA--------H-VRNVDYDTKKKHLLVTAA-DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYD  265 (346)
Q Consensus       196 d~~~~~~~~~~~~~--------~-v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~  265 (346)
                      -...++++..+..+        + |-+|+.+.+.. +++..+ ..+..-+||..+ +..+..-.  -.....++-...| 
T Consensus       258 ~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~g-lV~lTSP~GN~~vi~da~t-G~vv~~a~--l~daaGva~~~~g-  332 (366)
T COG3490         258 HFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDG-LVALTSPRGNRAVIWDAAT-GAVVSEAA--LPDAAGVAAAKGG-  332 (366)
T ss_pred             eccCCCcCcccCCCHHHHHHHHhhhhheeecccCC-eEEEecCCCCeEEEEEcCC-CcEEeccc--ccccccceeccCc-
Confidence            22334444333321        2 88899987776 554444 445678999987 43332211  1223344444444 


Q ss_pred             cEEEEecCCCeEEEEecC
Q 019059          266 GFILSAGTDSTVNLWLVS  283 (346)
Q Consensus       266 ~~l~s~~~d~~i~iwd~~  283 (346)
                        |+..+.+|.+.++...
T Consensus       333 --f~vssg~G~~~~~s~~  348 (366)
T COG3490         333 --FAVSSGQGRIIFYSRA  348 (366)
T ss_pred             --eEEecCCceEEecccc
Confidence              6666778888887443

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.31  E-value=0.06  Score=43.21  Aligned_cols=225  Identities=12%  Similarity=0.075  Sum_probs=122.3

Q ss_pred             CCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcce-EEEEecCcccCCCCCccceeeeeee
Q 019059           39 KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYG-AAIWQIPELYGQLNSPQLERIAALD  117 (346)
Q Consensus        39 ~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~-i~vw~~~~~~~~~~~~~~~~~~~~~  117 (346)
                      ..+++..+.-++..++-+...   .-+..-..|+++|..++-++.+   -.-|+ ..++|..         ..+...++.
T Consensus        44 ~~dgs~g~a~~~eaGk~v~~~---~lpaR~Hgi~~~p~~~ravafA---RrPGtf~~vfD~~---------~~~~pv~~~  108 (366)
T COG3490          44 ARDGSFGAATLSEAGKIVFAT---ALPARGHGIAFHPALPRAVAFA---RRPGTFAMVFDPN---------GAQEPVTLV  108 (366)
T ss_pred             ccCCceeEEEEccCCceeeee---ecccccCCeecCCCCcceEEEE---ecCCceEEEECCC---------CCcCcEEEe
Confidence            445666666666655433322   2345566789999877666553   23333 5678876         233333332


Q ss_pred             ccCCc--eEEEEeecCCCCcEEEEec-----CCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec--
Q 019059          118 AHVGK--INCVLWWSSGRHDKLVSID-----EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC--  188 (346)
Q Consensus       118 ~~~~~--i~~~~~~~~~~~~~~~~~~-----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--  188 (346)
                      ..++.  --.-.|+|||.+ ++++-.     .|.|-|||.+.+-+    ...+...|--....+.|.+||+.++.+..  
T Consensus       109 s~~~RHfyGHGvfs~dG~~-LYATEndfd~~rGViGvYd~r~~fq----rvgE~~t~GiGpHev~lm~DGrtlvvanGGI  183 (366)
T COG3490         109 SQEGRHFYGHGVFSPDGRL-LYATENDFDPNRGVIGVYDAREGFQ----RVGEFSTHGIGPHEVTLMADGRTLVVANGGI  183 (366)
T ss_pred             cccCceeecccccCCCCcE-EEeecCCCCCCCceEEEEecccccc----eecccccCCcCcceeEEecCCcEEEEeCCce
Confidence            22111  112369999995 555522     37899999984321    11222233335577889999998887643  


Q ss_pred             ----C------------CeEEEEEccCCCccceeecc----c--eeEEEeCCCCCcEEEEecCCCe----EEEEEcccCC
Q 019059          189 ----E------------SSVQFWDLRSMGKTNSIEHA----H--VRNVDYDTKKKHLLVTAADESG----IHLWDLRMLK  242 (346)
Q Consensus       189 ----d------------~~i~i~d~~~~~~~~~~~~~----~--v~~~~~~~~~~~~l~~~~~dg~----i~i~d~~~~~  242 (346)
                          |            -++.+.|..++..+.+...+    +  +..++..++|. +++.+-..|.    --+.-.....
T Consensus       184 ethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgt-vwfgcQy~G~~~d~ppLvg~~~~g  262 (366)
T COG3490         184 ETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGT-VWFGCQYRGPRNDLPPLVGHFRKG  262 (366)
T ss_pred             ecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCc-EEEEEEeeCCCccCCcceeeccCC
Confidence                1            13455666666655433322    1  88889999887 4443322221    1111111112


Q ss_pred             cceeeec-------CCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          243 APIQELP-------GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       243 ~~~~~~~-------~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      .++.-+.       .....|-+|+.+.+.....+|.-..+...+||..+
T Consensus       263 ~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~t  311 (366)
T COG3490         263 EPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAAT  311 (366)
T ss_pred             CcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCC
Confidence            2333222       12245677887765523444444556788999998

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.28  E-value=0.041  Score=45.82  Aligned_cols=145  Identities=14%  Similarity=0.103  Sum_probs=81.9

Q ss_pred             EEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccce
Q 019059          126 VLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNS  205 (346)
Q Consensus       126 ~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  205 (346)
                      -.|.++...++.+--..+.|.-|+..++... .....   +   .+.++..-..+..|++. .. .+++++..++.....
T Consensus        30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~p---~---~~~~~~~~d~~g~Lv~~-~~-g~~~~~~~~~~~~t~  100 (307)
T COG3386          30 PVWDPDRGALLWVDILGGRIHRLDPETGKKR-VFPSP---G---GFSSGALIDAGGRLIAC-EH-GVRLLDPDTGGKITL  100 (307)
T ss_pred             ccCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEECC---C---CcccceeecCCCeEEEE-cc-ccEEEeccCCceeEE
Confidence            3577877765555556789999998755321 11111   1   23333333233334443 33 366677655544222


Q ss_pred             ee---ccc----eeEEEeCCCCCcEEEEecC-----------CCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcE
Q 019059          206 IE---HAH----VRNVDYDTKKKHLLVTAAD-----------ESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGF  267 (346)
Q Consensus       206 ~~---~~~----v~~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~  267 (346)
                      +.   .+.    .+.+...|+|. +.++...           -|.++.+|..  ...++.+..+-..-+.|+|||++ +.
T Consensus       101 ~~~~~~~~~~~r~ND~~v~pdG~-~wfgt~~~~~~~~~~~~~~G~lyr~~p~--g~~~~l~~~~~~~~NGla~SpDg-~t  176 (307)
T COG3386         101 LAEPEDGLPLNRPNDGVVDPDGR-IWFGDMGYFDLGKSEERPTGSLYRVDPD--GGVVRLLDDDLTIPNGLAFSPDG-KT  176 (307)
T ss_pred             eccccCCCCcCCCCceeEcCCCC-EEEeCCCccccCccccCCcceEEEEcCC--CCEEEeecCcEEecCceEECCCC-CE
Confidence            21   111    78899999998 4444333           1334444432  44455555556667899999999 55


Q ss_pred             EEEe-cCCCeEEEEecC
Q 019059          268 ILSA-GTDSTVNLWLVS  283 (346)
Q Consensus       268 l~s~-~~d~~i~iwd~~  283 (346)
                      |+.+ +..+.|.-|++.
T Consensus       177 ly~aDT~~~~i~r~~~d  193 (307)
T COG3386         177 LYVADTPANRIHRYDLD  193 (307)
T ss_pred             EEEEeCCCCeEEEEecC
Confidence            5544 445788888776

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.28  E-value=0.11  Score=45.51  Aligned_cols=197  Identities=9%  Similarity=0.066  Sum_probs=95.3

Q ss_pred             cCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEee
Q 019059           50 SSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWW  129 (346)
Q Consensus        50 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  129 (346)
                      +..+..+. .....+ +.|-++.|..+...+ +.    ..||.++++|+.... ..  .-+..+.........+....+.
T Consensus        67 s~sG~ll~-~i~w~~-~~iv~~~wt~~e~Lv-vV----~~dG~v~vy~~~G~~-~f--sl~~~i~~~~v~e~~i~~~~~~  136 (410)
T PF04841_consen   67 SSSGKLLS-SIPWDS-GRIVGMGWTDDEELV-VV----QSDGTVRVYDLFGEF-QF--SLGEEIEEEKVLECRIFAIWFY  136 (410)
T ss_pred             CCCCCEeE-EEEECC-CCEEEEEECCCCeEE-EE----EcCCEEEEEeCCCce-ee--chhhhccccCcccccccccccC
Confidence            33334443 333333 899999999865544 44    389999999985110 00  0011111122222333333333


Q ss_pred             cCCCCcEEEEecCCeEEEEEcCCCC-CCceeeecc---cCCC-ceeeEE-EEeCCCCCcEEEEecCCeEEEEEccCCCcc
Q 019059          130 SSGRHDKLVSIDEENIFLWSLDCSN-KNAQVQSKQ---SSGM-LHYLSG-GAWDPHDVNAVAATCESSVQFWDLRSMGKT  203 (346)
Q Consensus       130 ~~~~~~~~~~~~d~~i~vwd~~~~~-~~~~~~~~~---~~~~-~~~v~~-~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  203 (346)
                      .+|  +++.+ .++.+.+..-.... .........   ...+ ...... ..++.+....+....++.+.+.+-...+. 
T Consensus       137 ~~G--ivvLt-~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~-  212 (410)
T PF04841_consen  137 KNG--IVVLT-GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ-  212 (410)
T ss_pred             CCC--EEEEC-CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc-
Confidence            344  23333 34454443322111 101110000   0000 001111 23444455555555566677555443222 


Q ss_pred             ceeec-cceeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCC-CcceEEEEeCCCC
Q 019059          204 NSIEH-AHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGH-THWTWAVCCNPEY  264 (346)
Q Consensus       204 ~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~v~~v~~~~~~  264 (346)
                        +.. +++..++.||+++ .++.-..+|.+.+.+..- .+....+... ......+.|+-+.
T Consensus       213 --i~~~~~i~~iavSpng~-~iAl~t~~g~l~v~ssDf-~~~~~e~~~~~~~~p~~~~WCG~d  271 (410)
T PF04841_consen  213 --IDSDGPIIKIAVSPNGK-FIALFTDSGNLWVVSSDF-SEKLCEFDTDSKSPPKQMAWCGND  271 (410)
T ss_pred             --ccCCCCeEEEEECCCCC-EEEEEECCCCEEEEECcc-cceeEEeecCcCCCCcEEEEECCC
Confidence              221 2399999999998 778778889998887653 4344444432 2445566666554

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.27  E-value=0.058  Score=43.82  Aligned_cols=150  Identities=11%  Similarity=0.044  Sum_probs=86.1

Q ss_pred             eeEEEEeCCCCCcEEEEe---cCCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEE-cccCCcc
Q 019059          170 YLSGGAWDPHDVNAVAAT---CESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWD-LRMLKAP  244 (346)
Q Consensus       170 ~v~~~~~~~~~~~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d-~~~~~~~  244 (346)
                      .+.+.++++++..+++..   ....++++.  .+........+. +....|++++. +.+....+...+++. .......
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~~g~~l~~PS~d~~g~-~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVLTGGSLTRPSWDPDGW-VWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeeccCCccccccccCCCC-EEEEEcCCCceEEEEecCCCcce
Confidence            578889999999887776   234555554  444333333344 88999999986 666656566666663 2221211


Q ss_pred             eeeecCC--CcceEEEEeCCCCCcEEEEec---CCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeE
Q 019059          245 IQELPGH--THWTWAVCCNPEYDGFILSAG---TDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYG  319 (346)
Q Consensus       245 ~~~~~~~--~~~v~~v~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  319 (346)
                      ...+...  ...|..+.+|||| ..++...   .++.|.+=-+......          .+.....+..........+.+
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG-~RvA~v~~~~~~~~v~va~V~r~~~g----------~~~~l~~~~~~~~~~~~~v~~  170 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDG-TRVAVVVEDGGGGRVYVAGVVRDGDG----------VPRRLTGPRRVAPPLLSDVTD  170 (253)
T ss_pred             eEEecccccCCceEEEEECCCC-cEEEEEEecCCCCeEEEEEEEeCCCC----------CcceeccceEecccccCccee
Confidence            2222211  1289999999999 5555444   3467777665431100          000011222222233456899


Q ss_pred             EEeCCCCCcEEEEee
Q 019059          320 LAWSSREPWIFASLS  334 (346)
Q Consensus       320 ~~~~~~~~~~l~s~~  334 (346)
                      ++|.+++. +++.+.
T Consensus       171 v~W~~~~~-L~V~~~  184 (253)
T PF10647_consen  171 VAWSDDST-LVVLGR  184 (253)
T ss_pred             eeecCCCE-EEEEeC
Confidence            99999986 554444

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.23  E-value=0.11  Score=44.67  Aligned_cols=232  Identities=10%  Similarity=0.055  Sum_probs=97.3

Q ss_pred             CCeEEEEEecCCC---CeEEEeeeeccc-cceEEeeec-----------CCCCceEEEEeecCCcceEEEEecCcccCCC
Q 019059           41 ENEVHLLRLSSGG---TELICEGLFSHP-NEIWDLSSC-----------PFDQRIFSTVFSTGESYGAAIWQIPELYGQL  105 (346)
Q Consensus        41 ~~~i~~~~~~~~~---~~~~~~~~~~h~-~~v~~~~~~-----------~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~  105 (346)
                      ...+..++++++.   .+++-+.-..+. ++....-|+           .+.++|++-   +=..+.|.|.|+.....  
T Consensus        36 pD~LatVDvdP~S~tYgqVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~P---gL~SsrIyviD~~~dPr--  110 (461)
T PF05694_consen   36 PDYLATVDVDPDSPTYGQVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILP---GLRSSRIYVIDTKTDPR--  110 (461)
T ss_dssp             --EEEEEE--TTSTTTTSEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEE---BTTT--EEEEE--S-TT--
T ss_pred             CCeEEEEECCCCCCCcccEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEee---eeccCcEEEEECCCCCC--
Confidence            3456667776643   123323323333 344444443           245566664   34667899999873211  


Q ss_pred             CCccceeeeeeec---cC----CceEEEEeecCCCCcEEEE-ec-----CCeEEEEEcCCCCCCceeeecccCCCceeeE
Q 019059          106 NSPQLERIAALDA---HV----GKINCVLWWSSGRHDKLVS-ID-----EENIFLWSLDCSNKNAQVQSKQSSGMLHYLS  172 (346)
Q Consensus       106 ~~~~~~~~~~~~~---~~----~~i~~~~~~~~~~~~~~~~-~~-----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~  172 (346)
                         ..+..+.+..   +.    ..-..+.--|+|. +++++ +.     -|.+.+.|-++-+....  .....+....-+
T Consensus       111 ---~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~-imIS~lGd~~G~g~Ggf~llD~~tf~v~g~--We~~~~~~~~gY  184 (461)
T PF05694_consen  111 ---KPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGR-IMISALGDADGNGPGGFVLLDGETFEVKGR--WEKDRGPQPFGY  184 (461)
T ss_dssp             ---S-EEEEEE-HHHHHHHH-EEEEEEEEE-SS---EEEEEEEETTS-S--EEEEE-TTT--EEEE----SB-TT-----
T ss_pred             ---CCceEeeeCHHHHHhhcCCCCCceeeecCCcc-EEEEeccCCCCCCCCcEEEEcCccccccce--eccCCCCCCCCC
Confidence               1222333321   11    1222333446776 45555 32     25566777654321111  111112233567


Q ss_pred             EEEeCCCCCcEEEEec--------------------CCeEEEEEccCCCccceeeccc----eeEEEeC--CCCCcEEEE
Q 019059          173 GGAWDPHDVNAVAATC--------------------ESSVQFWDLRSMGKTNSIEHAH----VRNVDYD--TKKKHLLVT  226 (346)
Q Consensus       173 ~~~~~~~~~~l~~~~~--------------------d~~i~i~d~~~~~~~~~~~~~~----v~~~~~~--~~~~~~l~~  226 (346)
                      .+.|.|..+.++++..                    ..++.+||+.+.+.++++..+.    +..|.|.  |+..+-++.
T Consensus       185 Dfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg  264 (461)
T PF05694_consen  185 DFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVG  264 (461)
T ss_dssp             -EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEE
T ss_pred             CeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEE
Confidence            7788887777776532                    2579999999999998887653    6677764  555544555


Q ss_pred             ecCCCeEEEEEcccCCc----ceeeec-----------------CCCcceEEEEeCCCCCcEEEEe-cCCCeEEEEecCC
Q 019059          227 AADESGIHLWDLRMLKA----PIQELP-----------------GHTHWTWAVCCNPEYDGFILSA-GTDSTVNLWLVST  284 (346)
Q Consensus       227 ~~~dg~i~i~d~~~~~~----~~~~~~-----------------~~~~~v~~v~~~~~~~~~l~s~-~~d~~i~iwd~~~  284 (346)
                      +.-..+|..|--...+.    .+..+.                 .-..-|+.|..|.|. ++|... =.+|.|+-||+..
T Consensus       265 ~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD-rfLYvs~W~~GdvrqYDISD  343 (461)
T PF05694_consen  265 CALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD-RFLYVSNWLHGDVRQYDISD  343 (461)
T ss_dssp             EE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS--EEEEEETTTTEEEEEE-SS
T ss_pred             EeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC-CEEEEEcccCCcEEEEecCC
Confidence            44555555553321111    111111                 112457899999999 666554 4689999999987

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=97.21  E-value=0.11  Score=44.18  Aligned_cols=242  Identities=9%  Similarity=0.039  Sum_probs=117.8

Q ss_pred             ceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccc-eeeeee----eccCCceEEEEeecC---CCCcEEE
Q 019059           67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQL-ERIAAL----DAHVGKINCVLWWSS---GRHDKLV  138 (346)
Q Consensus        67 ~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~-~~~~~~----~~~~~~i~~~~~~~~---~~~~~~~  138 (346)
                      ..++|+|.|+++.+++-     ..|.|.+++.+.        .. ..+..+    .........++++|+   +.+++++
T Consensus         3 ~P~~~a~~pdG~l~v~e-----~~G~i~~~~~~g--------~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~   69 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVAE-----RSGRIWVVDKDG--------SLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVY   69 (331)
T ss_dssp             SEEEEEEETTSCEEEEE-----TTTEEEEEETTT--------EECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEE
T ss_pred             CceEEEEeCCCcEEEEe-----CCceEEEEeCCC--------cCcceecccccccccccCCcccceeccccCCCCEEEEE
Confidence            45789999998666653     688999998331        11 122222    233557799999994   3434444


Q ss_pred             EecC--------CeEEEEEcCCCCC----Cceeeec-cc-CCCceeeEEEEeCCCCCcEEEEecC-------------Ce
Q 019059          139 SIDE--------ENIFLWSLDCSNK----NAQVQSK-QS-SGMLHYLSGGAWDPHDVNAVAATCE-------------SS  191 (346)
Q Consensus       139 ~~~d--------~~i~vwd~~~~~~----~~~~~~~-~~-~~~~~~v~~~~~~~~~~~l~~~~~d-------------~~  191 (346)
                      ....        ..|.-|.......    ...+... .. ....+....++|.|++.+.++.+..             |.
T Consensus        70 ~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~  149 (331)
T PF07995_consen   70 YTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGK  149 (331)
T ss_dssp             EEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTE
T ss_pred             EEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccce
Confidence            4421        3455555543310    1111111 11 1123356679999999766666532             34


Q ss_pred             EEEEEccCCC------------ccceeeccc--eeEEEeCCC-CCcEEEEe-cCCCeEEEEEcccCC-------------
Q 019059          192 VQFWDLRSMG------------KTNSIEHAH--VRNVDYDTK-KKHLLVTA-ADESGIHLWDLRMLK-------------  242 (346)
Q Consensus       192 i~i~d~~~~~------------~~~~~~~~~--v~~~~~~~~-~~~~l~~~-~~dg~i~i~d~~~~~-------------  242 (346)
                      |.-.+....-            ....+..+.  ...++|+|. +. ++++- +.+..=.|--++...             
T Consensus       150 ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~-l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~  228 (331)
T PF07995_consen  150 ILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGR-LWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKY  228 (331)
T ss_dssp             EEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTE-EEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCST
T ss_pred             EEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCc-EEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCC
Confidence            5444543210            122223334  889999999 65 44432 222222222222111             


Q ss_pred             ---------------cceeeecCCCcceEEEEeCC-------CCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcc
Q 019059          243 ---------------APIQELPGHTHWTWAVCCNP-------EYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPN  300 (346)
Q Consensus       243 ---------------~~~~~~~~~~~~v~~v~~~~-------~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  300 (346)
                                     .|+..+..| ..+..+.|-.       .+ .+|++.-..+.|....+....              
T Consensus       229 ~~~~~~~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g-~~~~~~~~~~~i~~~~~~~~~--------------  292 (331)
T PF07995_consen  229 SGPPIGDAPSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRG-DLFVADYGGGRIWRLDLDEDG--------------  292 (331)
T ss_dssp             TSS-ECTGSS-TTS---SEEETTT---EEEEEEE-SSSSGGGTT-EEEEEETTTTEEEEEEEETTE--------------
T ss_pred             CCCccccccCCCCcCccceeecCc-cccCceEEECCccCccccC-cEEEecCCCCEEEEEeeecCC--------------
Confidence                           123333333 4455555542       23 455555555677766665300              


Q ss_pred             ccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEE
Q 019059          301 QRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVR  340 (346)
Q Consensus       301 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~  340 (346)
                       ...+....+......+.++++.|||. ++++...+|.|+
T Consensus       293 -~~~~~~~~~~~~~~r~~~v~~~pDG~-Lyv~~d~~G~iy  330 (331)
T PF07995_consen  293 -SVTEEEEFLGGFGGRPRDVAQGPDGA-LYVSDDSDGKIY  330 (331)
T ss_dssp             -EEEEEEEECTTSSS-EEEEEEETTSE-EEEEE-TTTTEE
T ss_pred             -CccceEEccccCCCCceEEEEcCCCe-EEEEECCCCeEe
Confidence             00111111234444689999999997 777777788764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.04  E-value=0.14  Score=42.43  Aligned_cols=190  Identities=12%  Similarity=0.102  Sum_probs=89.9

Q ss_pred             eEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCC-
Q 019059          123 INCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG-  201 (346)
Q Consensus       123 i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-  201 (346)
                      ...+....++.  ....+..|.|  |....+....+.......   ..+..+.-++++.+++++.....+.-||.-... 
T Consensus       106 ~~~i~~l~~~~--~~l~~~~G~i--y~T~DgG~tW~~~~~~~~---gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w  178 (302)
T PF14870_consen  106 PFGITALGDGS--AELAGDRGAI--YRTTDGGKTWQAVVSETS---GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTW  178 (302)
T ss_dssp             EEEEEEEETTE--EEEEETT--E--EEESSTTSSEEEEE-S-------EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-
T ss_pred             eeEEEEcCCCc--EEEEcCCCcE--EEeCCCCCCeeEcccCCc---ceeEeEEECCCCcEEEEECcccEEEEecCCCccc
Confidence            34444444443  3333444554  444445545555444333   378888889999977777655555667754322 


Q ss_pred             ccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEccc----CCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCe
Q 019059          202 KTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRM----LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDST  276 (346)
Q Consensus       202 ~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~  276 (346)
                      ..+...... +..+.|.|++. +.+.+ ..|.|+.=+...    ..+++..+......+..++|.+++ ...++|+. |.
T Consensus       179 ~~~~r~~~~riq~~gf~~~~~-lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~-~~wa~gg~-G~  254 (302)
T PF14870_consen  179 QPHNRNSSRRIQSMGFSPDGN-LWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPN-EIWAVGGS-GT  254 (302)
T ss_dssp             EEEE--SSS-EEEEEE-TTS--EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS--EEEEEST-T-
T ss_pred             eEEccCccceehhceecCCCC-EEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCC-CEEEEeCC-cc
Confidence            122222123 99999999987 55544 778888776211    111122222233457899999988 77776664 43


Q ss_pred             EEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEe
Q 019059          277 VNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNH  342 (346)
Q Consensus       277 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw  342 (346)
                      + +.....+                ...+.......-....+.|.|.+..+  -...+.+|.+.-|
T Consensus       255 l-~~S~DgG----------------ktW~~~~~~~~~~~n~~~i~f~~~~~--gf~lG~~G~ll~~  301 (302)
T PF14870_consen  255 L-LVSTDGG----------------KTWQKDRVGENVPSNLYRIVFVNPDK--GFVLGQDGVLLRY  301 (302)
T ss_dssp             E-EEESSTT----------------SS-EE-GGGTTSSS---EEEEEETTE--EEEE-STTEEEEE
T ss_pred             E-EEeCCCC----------------ccceECccccCCCCceEEEEEcCCCc--eEEECCCcEEEEe
Confidence            4 2333320                01222222223344578888876543  3455668877655

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.01  E-value=0.0022  Score=49.30  Aligned_cols=140  Identities=9%  Similarity=0.030  Sum_probs=82.0

Q ss_pred             cEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceee---ccc-
Q 019059          135 DKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE---HAH-  210 (346)
Q Consensus       135 ~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~-  210 (346)
                      ++.+.+.++.|.-++++..+.........    ...   .....-+..+++++.+|.|.+|.....-......   ... 
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~----~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i  104 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKESCRSERFI----DEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESI  104 (238)
T ss_pred             hhccccCCcccccchhhhhhhhhhhhhhh----hcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccc
Confidence            35566778888888877432211111111    111   1112234668899999999999887222111111   111 


Q ss_pred             eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCC-cceEEEEeCCCCCcEEEEe--cCCCeEEEEecCC
Q 019059          211 VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHT-HWTWAVCCNPEYDGFILSA--GTDSTVNLWLVST  284 (346)
Q Consensus       211 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~v~~v~~~~~~~~~l~s~--~~d~~i~iwd~~~  284 (346)
                      ...|.--.++. +..++..+|.|+.|++.. .+.+-....|+ .++.....+..+ .+++.+  |.|..++.|++..
T Consensus       105 ~~~Ip~~~~~~-~~c~~~~dg~ir~~n~~p-~k~~g~~g~h~~~~~e~~ivv~sd-~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  105 DLGIPNGRDSS-LGCVGAQDGRIRACNIKP-NKVLGYVGQHNFESGEELIVVGSD-EFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             eeccccccccc-eeEEeccCCceeeecccc-CceeeeeccccCCCcceeEEecCC-ceEEeeccccchhhhhcchhh
Confidence            23333333443 888999999999999885 43444444565 455555555555 677777  7788888888875

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.90  E-value=0.003  Score=59.11  Aligned_cols=99  Identities=16%  Similarity=0.205  Sum_probs=72.3

Q ss_pred             EEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccc
Q 019059          223 LLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQR  302 (346)
Q Consensus       223 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  302 (346)
                      .++.|+..|.+-..|.+..-.+...-..-.++|++++|+.+| ..++.|-.+|.|.+||+..                  
T Consensus       101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg-~~l~~G~~~G~V~v~D~~~------------------  161 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDG-SLLLAGLGDGHVTVWDMHR------------------  161 (1206)
T ss_pred             eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCC-ceeccccCCCcEEEEEccC------------------
Confidence            678888889999999875222233333356899999999999 9999999999999999998                  


Q ss_pred             ccccccccccccceeeEE---EeCCCCCcEEEEeecCCeEEEeee
Q 019059          303 ANSLLNSYSDYEDSVYGL---AWSSREPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       303 ~~~~~~~~~~~~~~v~~~---~~~~~~~~~l~s~~~d~~v~vw~~  344 (346)
                       +++++.+..|..+.+++   .+..++. .+.++...|.  +|.+
T Consensus       162 -~k~l~~i~e~~ap~t~vi~v~~t~~nS-~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  162 -AKILKVITEHGAPVTGVIFVGRTSQNS-KLLTSDTGGS--FWKL  202 (1206)
T ss_pred             -CcceeeeeecCCccceEEEEEEeCCCc-EEEEccCCCc--eEEE
Confidence             77887777666554443   4445554 6667766664  5543

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.81  E-value=0.0057  Score=34.71  Aligned_cols=30  Identities=23%  Similarity=0.287  Sum_probs=27.2

Q ss_pred             ceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          315 DSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       315 ~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      ..|..++|+|... ++|.+..||.|.++.+.
T Consensus        12 ~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   12 SRVSCMSWCPTMD-LIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CcEEEEEECCCCC-EEEEEECCCeEEEEECC
Confidence            4589999999997 99999999999999875

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.80  E-value=0.0056  Score=34.72  Aligned_cols=31  Identities=13%  Similarity=0.170  Sum_probs=28.4

Q ss_pred             CcceEEEEeCCCCCcEEEEecCCCeEEEEecC
Q 019059          252 THWTWAVCCNPEYDGFILSAGTDSTVNLWLVS  283 (346)
Q Consensus       252 ~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~  283 (346)
                      ...|..++|+|.. .+||.++.||.|.+|.++
T Consensus        11 ~~~v~~~~w~P~m-dLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTM-DLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCC-CEEEEEECCCeEEEEECC
Confidence            4568999999999 999999999999999985

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=96.77  E-value=0.03  Score=48.44  Aligned_cols=146  Identities=10%  Similarity=0.049  Sum_probs=80.4

Q ss_pred             eeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccc-eeeccceeEEEeCCCCCcEEEEecCCCeEEEEEcccC-------
Q 019059          170 YLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN-SIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRML-------  241 (346)
Q Consensus       170 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-------  241 (346)
                      .|..+.|.++...++++...|.|.+|.....+... .-... -....+.+..       ..++.-.+-|++..       
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~-~~~~~~~~~~-------~~~~~~~l~di~~r~~~~~~~   74 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPP-DLDYNFRRFS-------LNNSPGKLTDISDRAPPSLKE   74 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE-------------------S---------GGGSS-SEEE-GGG--TT-SE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCc-ccCccccccc-------ccCCCcceEEehhhCCccccc
Confidence            58889999998999999999999999877654332 11100 1112211110       11112223343321       


Q ss_pred             -CcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccc-------cc-c
Q 019059          242 -KAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNS-------YS-D  312 (346)
Q Consensus       242 -~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~  312 (346)
                       -.|...+....++|++++.|.-|  ++|.|..+|.+.|.|+|.                   ...++.       .. .
T Consensus        75 gf~P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RG-------------------PavI~~~~i~~~~~~~~  133 (395)
T PF08596_consen   75 GFLPLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRG-------------------PAVIYNENIRESFLSKS  133 (395)
T ss_dssp             EEEEEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTT-------------------TEEEEEEEGGG--T-SS
T ss_pred             ccCchhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCC-------------------CeEEeeccccccccccc
Confidence             12445555568999999998665  899999999999999986                   333332       11 1


Q ss_pred             ccceeeEEEeCC-----CC--CcEEEEeecCCeEEEeee
Q 019059          313 YEDSVYGLAWSS-----RE--PWIFASLSYDGRVRNHML  344 (346)
Q Consensus       313 ~~~~v~~~~~~~-----~~--~~~l~s~~~d~~v~vw~~  344 (346)
                      ....|+++.|.-     |+  .-+|+.|...|.+.+|.+
T Consensus       134 ~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkI  172 (395)
T PF08596_consen  134 SSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKI  172 (395)
T ss_dssp             ----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEE
T ss_pred             cccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEE
Confidence            234577888862     22  136788888899999976

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.69  E-value=0.0002  Score=60.96  Aligned_cols=144  Identities=14%  Similarity=0.142  Sum_probs=102.0

Q ss_pred             eEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeec-cceeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeec
Q 019059          171 LSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH-AHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP  249 (346)
Q Consensus       171 v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  249 (346)
                      .....|-|.+..++.++.+..+..||-. ++....... +....++|+.+++.+++.+-..+.+.+||+.+..  ..++.
T Consensus        37 pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey--tqqLE  113 (615)
T KOG2247|consen   37 PIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY--TQQLE  113 (615)
T ss_pred             cceeeEecCCCceehhhhhhHHHhhhhh-cceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhh--HHHHh
Confidence            3445788888889999999999999965 333333332 2377899999998667777788999999998532  22222


Q ss_pred             C-CCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCc
Q 019059          250 G-HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPW  328 (346)
Q Consensus       250 ~-~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  328 (346)
                      . -...-.-+.|++.. ..++.+...+.+.|++..+                   ...+-....|...+++++|.+.+  
T Consensus       114 ~gg~~s~sll~wsKg~-~el~ig~~~gn~viynhgt-------------------sR~iiv~Gkh~RRgtq~av~lEd--  171 (615)
T KOG2247|consen  114 SGGTSSKSLLAWSKGT-PELVIGNNAGNIVIYNHGT-------------------SRRIIVMGKHQRRGTQIAVTLED--  171 (615)
T ss_pred             ccCcchHHHHhhccCC-ccccccccccceEEEeccc-------------------hhhhhhhcccccceeEEEecccc--
Confidence            1 11122226799988 7888888899999999988                   44454454588889999999976  


Q ss_pred             EEEEeecCCeE
Q 019059          329 IFASLSYDGRV  339 (346)
Q Consensus       329 ~l~s~~~d~~v  339 (346)
                      +.+.++.|..+
T Consensus       172 ~vil~dcd~~L  182 (615)
T KOG2247|consen  172 YVILCDCDNTL  182 (615)
T ss_pred             eeeecCcHHHH
Confidence            46667666543

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.66  E-value=0.22  Score=38.95  Aligned_cols=142  Identities=13%  Similarity=0.032  Sum_probs=84.1

Q ss_pred             cceEEeeecCCCCceEEEEeecCC-----cceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEe
Q 019059           66 NEIWDLSSCPFDQRIFSTVFSTGE-----SYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI  140 (346)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~-----d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  140 (346)
                      ...++-..+|+|++..-+...-+.     .+.++.|-..           ..+..+...-..-+.++|+.+.+.+.+.-+
T Consensus       109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~-----------h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDs  177 (310)
T KOG4499|consen  109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG-----------HQVELIWNCVGISNGLAWDSDAKKFYYIDS  177 (310)
T ss_pred             cccccCccCCCCceeeeeeccccccccccccEEEEeccC-----------CCceeeehhccCCccccccccCcEEEEEcc
Confidence            456677789999985554311111     2345555443           111222233334467899988886555557


Q ss_pred             cCCeEEEEE--cCCCCCCce--eeeccc--CCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc--ee
Q 019059          141 DEENIFLWS--LDCSNKNAQ--VQSKQS--SGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--VR  212 (346)
Q Consensus       141 ~d~~i~vwd--~~~~~~~~~--~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--v~  212 (346)
                      .+-.|.-||  ..++.....  +.....  +......-+++...+|...++.-+.++|...|..+++.+.++..+.  ++
T Consensus       178 ln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qit  257 (310)
T KOG4499|consen  178 LNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQIT  257 (310)
T ss_pred             CceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceE
Confidence            788887788  444432111  111000  0011122344556677777777788999999999999988887555  99


Q ss_pred             EEEeCC
Q 019059          213 NVDYDT  218 (346)
Q Consensus       213 ~~~~~~  218 (346)
                      +++|--
T Consensus       258 sccFgG  263 (310)
T KOG4499|consen  258 SCCFGG  263 (310)
T ss_pred             EEEecC
Confidence            999963

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.62  E-value=0.27  Score=39.57  Aligned_cols=127  Identities=12%  Similarity=0.127  Sum_probs=75.8

Q ss_pred             CcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCc
Q 019059           89 ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGML  168 (346)
Q Consensus        89 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  168 (346)
                      .++...+||..         +.+.+.++.- .+.=..++  .+++. ++.+.....++++|..+-+....+.........
T Consensus       108 k~~~~f~yd~~---------tl~~~~~~~y-~~EGWGLt--~dg~~-Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv  174 (264)
T PF05096_consen  108 KEGTGFVYDPN---------TLKKIGTFPY-PGEGWGLT--SDGKR-LIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPV  174 (264)
T ss_dssp             SSSEEEEEETT---------TTEEEEEEE--SSS--EEE--ECSSC-EEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE-
T ss_pred             cCCeEEEEccc---------cceEEEEEec-CCcceEEE--cCCCE-EEEECCccceEEECCcccceEEEEEEEECCEEC
Confidence            67789999987         6777777743 34556666  56665 666644678999998765544444443333334


Q ss_pred             eeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceee----------------ccc-eeEEEeCCCCCcEEEEecC
Q 019059          169 HYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE----------------HAH-VRNVDYDTKKKHLLVTAAD  229 (346)
Q Consensus       169 ~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~----------------~~~-v~~~~~~~~~~~~l~~~~~  229 (346)
                      ..++.+.|. +|...+-.=....|...|..+|+....+.                ... .+.||++|..+.+++||=.
T Consensus       175 ~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~  251 (264)
T PF05096_consen  175 SNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL  251 (264)
T ss_dssp             --EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred             CCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence            466777776 45433333346677778888887554331                012 8999999998867777643

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.61  E-value=0.012  Score=55.37  Aligned_cols=98  Identities=17%  Similarity=0.286  Sum_probs=70.2

Q ss_pred             CCcEEEEecCCeEEEEEccCCCc-cceeeccc--eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceE
Q 019059          180 DVNAVAATCESSVQFWDLRSMGK-TNSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTW  256 (346)
Q Consensus       180 ~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~  256 (346)
                      +..++.+++.|.+-..|+...-. ...-....  |++++|+.+|. +++.|-.+|.|.+||+.. +++++.+..|..+.+
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D~~~-~k~l~~i~e~~ap~t  176 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWDMHR-AKILKVITEHGAPVT  176 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCc-eeccccCCCcEEEEEccC-CcceeeeeecCCccc
Confidence            45577888888998888876422 11111111  99999999998 899999999999999997 567888877776655


Q ss_pred             EE---EeCCCCCcEEEEecCCCeEEEEec
Q 019059          257 AV---CCNPEYDGFILSAGTDSTVNLWLV  282 (346)
Q Consensus       257 ~v---~~~~~~~~~l~s~~~d~~i~iwd~  282 (346)
                      .+   .+..++ ..+.++..-|.  +|.+
T Consensus       177 ~vi~v~~t~~n-S~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  177 GVIFVGRTSQN-SKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             eEEEEEEeCCC-cEEEEccCCCc--eEEE
Confidence            44   455566 67788777776  5544

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.59  E-value=0.23  Score=45.55  Aligned_cols=207  Identities=11%  Similarity=0.038  Sum_probs=102.0

Q ss_pred             ceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecC------CeEEEEEcCCCCCCceeeeccc
Q 019059           91 YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDE------ENIFLWSLDCSNKNAQVQSKQS  164 (346)
Q Consensus        91 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d------~~i~vwd~~~~~~~~~~~~~~~  164 (346)
                      ..+..+|...       ..+.....+. ....-.+++...+  .++++||.|      ..+..||..+++ .........
T Consensus       301 ~~ve~yd~~~-------~~w~~~a~m~-~~r~~~~~~~~~~--~lYv~GG~~~~~~~l~~ve~YD~~~~~-W~~~a~M~~  369 (571)
T KOG4441|consen  301 RSVECYDPKT-------NEWSSLAPMP-SPRCRVGVAVLNG--KLYVVGGYDSGSDRLSSVERYDPRTNQ-WTPVAPMNT  369 (571)
T ss_pred             ceeEEecCCc-------CcEeecCCCC-cccccccEEEECC--EEEEEccccCCCcccceEEEecCCCCc-eeccCCccC
Confidence            3577777662       2334444443 2223444555433  367777777      457788887665 222221111


Q ss_pred             CCCceeeEEEEeCCCCCcEEEEecCC-----eEEEEEccCCCccce--eeccc--eeEEEeCCCCCcEEEEecCCC----
Q 019059          165 SGMLHYLSGGAWDPHDVNAVAATCES-----SVQFWDLRSMGKTNS--IEHAH--VRNVDYDTKKKHLLVTAADES----  231 (346)
Q Consensus       165 ~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~--~~~~~--v~~~~~~~~~~~~l~~~~~dg----  231 (346)
                      ..+  .. +++.. +|...++||.||     ++..||..+.+-...  +....  .....+  ++. +.++|+.++    
T Consensus       370 ~R~--~~-~v~~l-~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~-iYi~GG~~~~~~~  442 (571)
T KOG4441|consen  370 KRS--DF-GVAVL-DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGK-LYIIGGGDGSSNC  442 (571)
T ss_pred             ccc--cc-eeEEE-CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCE-EEEEcCcCCCccc
Confidence            111  11 12211 467777777764     577899887653221  21111  222222  354 788887554    


Q ss_pred             --eEEEEEcccCC-cceeeecCCCcceEEEEeCCCCCcEEEEecCCC-----eEEEEecCCCCCCCCCcccccCCccccc
Q 019059          232 --GIHLWDLRMLK-APIQELPGHTHWTWAVCCNPEYDGFILSAGTDS-----TVNLWLVSTSNHDELPSESLVESPNQRA  303 (346)
Q Consensus       232 --~i~i~d~~~~~-~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~  303 (346)
                        ++..||..+.. ..+..+..-..... ++. -++ .+.+.||.|+     +|..||..+                 ..
T Consensus       443 l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~-~~~-~iYvvGG~~~~~~~~~VE~ydp~~-----------------~~  502 (571)
T KOG4441|consen  443 LNSVECYDPETNTWTLIAPMNTRRSGFG-VAV-LNG-KIYVVGGFDGTSALSSVERYDPET-----------------NQ  502 (571)
T ss_pred             cceEEEEcCCCCceeecCCcccccccce-EEE-ECC-EEEEECCccCCCccceEEEEcCCC-----------------Cc
Confidence              56778876521 01111111111111 222 244 6778888776     367788776                 12


Q ss_pred             cccccccccccceeeEEEeCCCCCcEEEEeecCCe
Q 019059          304 NSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGR  338 (346)
Q Consensus       304 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~  338 (346)
                      +..+.........+....+  ++ .+.+.|+.|+.
T Consensus       503 W~~v~~m~~~rs~~g~~~~--~~-~ly~vGG~~~~  534 (571)
T KOG4441|consen  503 WTMVAPMTSPRSAVGVVVL--GG-KLYAVGGFDGN  534 (571)
T ss_pred             eeEcccCccccccccEEEE--CC-EEEEEecccCc
Confidence            3333333333333333333  23 47888888875

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.53  E-value=0.27  Score=38.45  Aligned_cols=144  Identities=11%  Similarity=0.096  Sum_probs=85.5

Q ss_pred             eeeEEEEeCCCCCcEEEEecC---------CeEEEEEccCCCccceeeccc--eeEEEeCCCCCcEEEEecCCCeEEEEE
Q 019059          169 HYLSGGAWDPHDVNAVAATCE---------SSVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWD  237 (346)
Q Consensus       169 ~~v~~~~~~~~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d  237 (346)
                      .+.+.-..+|+|++..-.-.|         |.++.|-... + +..+...-  -+.++|+.+.+.+.++-+.+-.|.-||
T Consensus       109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h-~-v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~d  186 (310)
T KOG4499|consen  109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH-Q-VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYD  186 (310)
T ss_pred             cccccCccCCCCceeeeeeccccccccccccEEEEeccCC-C-ceeeehhccCCccccccccCcEEEEEccCceEEeeee
Confidence            356777889999984332222         4455554332 1 12222111  678999988876667777777887787


Q ss_pred             cccCC------cceeeecC---CC-cceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccc
Q 019059          238 LRMLK------APIQELPG---HT-HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLL  307 (346)
Q Consensus       238 ~~~~~------~~~~~~~~---~~-~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (346)
                      .....      +.+..++.   .. ...-.++....| .+.++.-..++|...|..+                   ++.+
T Consensus       187 yd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG-~L~Va~~ng~~V~~~dp~t-------------------GK~L  246 (310)
T KOG4499|consen  187 YDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEG-NLYVATFNGGTVQKVDPTT-------------------GKIL  246 (310)
T ss_pred             cCCCcccccCcceeEEeccCCCcCCCCCCcceEccCC-cEEEEEecCcEEEEECCCC-------------------CcEE
Confidence            43211      12222221   01 111234445567 6666666678899999998                   8999


Q ss_pred             cccccccceeeEEEeCCC-CCcEEEEee
Q 019059          308 NSYSDYEDSVYGLAWSSR-EPWIFASLS  334 (346)
Q Consensus       308 ~~~~~~~~~v~~~~~~~~-~~~~l~s~~  334 (346)
                      .++.-....|++.+|-.- -..+.+++.
T Consensus       247 ~eiklPt~qitsccFgGkn~d~~yvT~a  274 (310)
T KOG4499|consen  247 LEIKLPTPQITSCCFGGKNLDILYVTTA  274 (310)
T ss_pred             EEEEcCCCceEEEEecCCCccEEEEEeh
Confidence            888887888999999643 222444443

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.39  E-value=0.72  Score=41.67  Aligned_cols=105  Identities=10%  Similarity=0.027  Sum_probs=60.5

Q ss_pred             CCeEEEEEcCCCCCCceeeecccCCCc---------------eee-EEEEeCCCCCcEEEEecCC---------------
Q 019059          142 EENIFLWSLDCSNKNAQVQSKQSSGML---------------HYL-SGGAWDPHDVNAVAATCES---------------  190 (346)
Q Consensus       142 d~~i~vwd~~~~~~~~~~~~~~~~~~~---------------~~v-~~~~~~~~~~~l~~~~~d~---------------  190 (346)
                      ++.+.-+|..+++...+..........               ..+ ...++.+.+..+++++.++               
T Consensus       174 ~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~  253 (488)
T cd00216         174 RGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNL  253 (488)
T ss_pred             CcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCC
Confidence            578888999888766655432110000               000 1234444556677776554               


Q ss_pred             ---eEEEEEccCCCccceeeccc--eeE------EEeC----CCCC--cEEEEecCCCeEEEEEcccCCcceee
Q 019059          191 ---SVQFWDLRSMGKTNSIEHAH--VRN------VDYD----TKKK--HLLVTAADESGIHLWDLRMLKAPIQE  247 (346)
Q Consensus       191 ---~i~i~d~~~~~~~~~~~~~~--v~~------~~~~----~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~  247 (346)
                         .|.-+|..+++..-.+...+  ...      ..+.    -++.  .+++.++.+|.+..+|.++ .+++-.
T Consensus       254 ~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~t-G~~~W~  326 (488)
T cd00216         254 YTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTT-GKLISA  326 (488)
T ss_pred             ceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCC-CcEeeE
Confidence               79999999998776654221  110      0110    1221  2577788899999999988 444433

The alignment model contains an 8-bladed beta-propeller.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.35  E-value=0.75  Score=41.54  Aligned_cols=133  Identities=13%  Similarity=0.064  Sum_probs=73.3

Q ss_pred             eEEEEEcCCCCCCceeeecccC-----CCce-eeEEEEeCCCCC---cEEEEecCCeEEEEEccCCCccceeeccceeEE
Q 019059          144 NIFLWSLDCSNKNAQVQSKQSS-----GMLH-YLSGGAWDPHDV---NAVAATCESSVQFWDLRSMGKTNSIEHAHVRNV  214 (346)
Q Consensus       144 ~i~vwd~~~~~~~~~~~~~~~~-----~~~~-~v~~~~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~v~~~  214 (346)
                      .|.-+|+.+++...+.......     .... .+..+. .-++.   .+++++.+|.+...|.++++.+-..... ...+
T Consensus       257 ~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-~~~~  334 (488)
T cd00216         257 SIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-EQPM  334 (488)
T ss_pred             eEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-cccc
Confidence            7888899888876665432211     0000 111111 01232   4677778999999999999987665421 1223


Q ss_pred             EeCCCCCcEEEEe-----------------cCCCeEEEEEcccCCcceeeecCC--C------cce--EEEEeCCCCCcE
Q 019059          215 DYDTKKKHLLVTA-----------------ADESGIHLWDLRMLKAPIQELPGH--T------HWT--WAVCCNPEYDGF  267 (346)
Q Consensus       215 ~~~~~~~~~l~~~-----------------~~dg~i~i~d~~~~~~~~~~~~~~--~------~~v--~~v~~~~~~~~~  267 (346)
                      +.+| +. +++..                 ..+|.+.-.|+.+.+ .+-+....  .      .+.  ..+..  .+ .+
T Consensus       335 ~~~~-~~-vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~-~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g-~~  408 (488)
T cd00216         335 AYDP-GL-VYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK-VVWEKREGTIRDSWNIGFPHWGGSLAT--AG-NL  408 (488)
T ss_pred             ccCC-ce-EEEccccccccCcccccCCCCCCCceEEEEEeCCCCc-EeeEeeCCccccccccCCcccCcceEe--cC-Ce
Confidence            3444 22 22211                 235677777777633 33222211  0      111  11222  34 67


Q ss_pred             EEEecCCCeEEEEecCC
Q 019059          268 ILSAGTDSTVNLWLVST  284 (346)
Q Consensus       268 l~s~~~d~~i~iwd~~~  284 (346)
                      |+.++.||.|+.+|..+
T Consensus       409 v~~g~~dG~l~ald~~t  425 (488)
T cd00216         409 VFAGAADGYFRAFDATT  425 (488)
T ss_pred             EEEECCCCeEEEEECCC
Confidence            88888999999999998

The alignment model contains an 8-bladed beta-propeller.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.21  E-value=0.56  Score=38.66  Aligned_cols=144  Identities=11%  Similarity=0.134  Sum_probs=80.5

Q ss_pred             CCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCC
Q 019059           76 FDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNK  155 (346)
Q Consensus        76 ~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~  155 (346)
                      .++.|+.++    ++| +.++++..        ........  +...|..+...++-+. +++-+ |+.+.++++..-..
T Consensus         6 ~~~~L~vGt----~~G-l~~~~~~~--------~~~~~~i~--~~~~I~ql~vl~~~~~-llvLs-d~~l~~~~L~~l~~   68 (275)
T PF00780_consen    6 WGDRLLVGT----EDG-LYVYDLSD--------PSKPTRIL--KLSSITQLSVLPELNL-LLVLS-DGQLYVYDLDSLEP   68 (275)
T ss_pred             CCCEEEEEE----CCC-EEEEEecC--------CccceeEe--ecceEEEEEEecccCE-EEEEc-CCccEEEEchhhcc
Confidence            466777753    566 88888731        22222222  2233999999988774 33333 69999999885443


Q ss_pred             Cceeee----c-----ccCCCceeeEEEE--eCCCCCcEEEEecCCeEEEEEccCC-----Cccceeeccc-eeEEEeCC
Q 019059          156 NAQVQS----K-----QSSGMLHYLSGGA--WDPHDVNAVAATCESSVQFWDLRSM-----GKTNSIEHAH-VRNVDYDT  218 (346)
Q Consensus       156 ~~~~~~----~-----~~~~~~~~v~~~~--~~~~~~~l~~~~~d~~i~i~d~~~~-----~~~~~~~~~~-v~~~~~~~  218 (346)
                      ......    .     ........+..++  -...+...++......|.+|.....     +..+.+.... +.+++|.+
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~  148 (275)
T PF00780_consen   69 VSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLG  148 (275)
T ss_pred             ccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeC
Confidence            321100    0     0011112333333  1223444445555668888887753     3344454444 99999983


Q ss_pred             CCCcEEEEecCCCeEEEEEccc
Q 019059          219 KKKHLLVTAADESGIHLWDLRM  240 (346)
Q Consensus       219 ~~~~~l~~~~~dg~i~i~d~~~  240 (346)
                        + .++.|.. ....+.|+.+
T Consensus       149 --~-~i~v~~~-~~f~~idl~~  166 (275)
T PF00780_consen  149 --N-KICVGTS-KGFYLIDLNT  166 (275)
T ss_pred             --C-EEEEEeC-CceEEEecCC
Confidence              3 5666654 3577888885

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.13  E-value=0.55  Score=37.86  Aligned_cols=183  Identities=10%  Similarity=0.006  Sum_probs=100.1

Q ss_pred             ceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccC-CceEEEEeecCCCCcEEEEecCCeE
Q 019059           67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV-GKINCVLWWSSGRHDKLVSIDEENI  145 (346)
Q Consensus        67 ~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~d~~i  145 (346)
                      --..+.|..++..+-+++  --....|+.+|++         +++......-.. ----.++..  +..++..+=.++..
T Consensus        46 FTQGL~~~~~g~LyESTG--~yG~S~l~~~d~~---------tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~  112 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTG--LYGQSSLRKVDLE---------TGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTG  112 (264)
T ss_dssp             EEEEEEEEETTEEEEEEC--STTEEEEEEEETT---------TSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEE
T ss_pred             cCccEEecCCCEEEEeCC--CCCcEEEEEEECC---------CCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeE
Confidence            345788866666666652  1123478999988         555544332211 111233333  33355566568999


Q ss_pred             EEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeecc---c----eeEEEeCC
Q 019059          146 FLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA---H----VRNVDYDT  218 (346)
Q Consensus       146 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---~----v~~~~~~~  218 (346)
                      .+||..+-+....+.-.      ..=.+++  .++..|+.+.....|+++|..+.+..+.+.-.   .    ++.+.|. 
T Consensus       113 f~yd~~tl~~~~~~~y~------~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-  183 (264)
T PF05096_consen  113 FVYDPNTLKKIGTFPYP------GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-  183 (264)
T ss_dssp             EEEETTTTEEEEEEE-S------SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-
T ss_pred             EEEccccceEEEEEecC------CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-
Confidence            99999865443333221      1445555  46788888888889999999887766555411   1    6777775 


Q ss_pred             CCCcEEEEecCCCeEEEEEcccCCcceeeec---------------CCCcceEEEEeCCCCCcEEEEecC
Q 019059          219 KKKHLLVTAADESGIHLWDLRMLKAPIQELP---------------GHTHWTWAVCCNPEYDGFILSAGT  273 (346)
Q Consensus       219 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------------~~~~~v~~v~~~~~~~~~l~s~~~  273 (346)
                      +|. +.|=.=....|...|..+ +..+..+.               ....-.+.|++.|...++++||=.
T Consensus       184 ~G~-IyANVW~td~I~~Idp~t-G~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~  251 (264)
T PF05096_consen  184 NGK-IYANVWQTDRIVRIDPET-GKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL  251 (264)
T ss_dssp             TTE-EEEEETTSSEEEEEETTT--BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred             cCE-EEEEeCCCCeEEEEeCCC-CeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence            343 444333444555555554 22222110               113457899999988677777743

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.98  E-value=0.064  Score=51.09  Aligned_cols=113  Identities=12%  Similarity=0.053  Sum_probs=78.2

Q ss_pred             eeEEEEeCCCCCcEEEEe--cCCeEEEEEccCCCccce-----e-------eccc-eeEEEeCCCCCcEEEEecCCCeEE
Q 019059          170 YLSGGAWDPHDVNAVAAT--CESSVQFWDLRSMGKTNS-----I-------EHAH-VRNVDYDTKKKHLLVTAADESGIH  234 (346)
Q Consensus       170 ~v~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~-----~-------~~~~-v~~~~~~~~~~~~l~~~~~dg~i~  234 (346)
                      .+..+...+|+...++..  ++-.|..||++.-.....     +       ..+. ..++.|+|.-....+....|+.|+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            445555666765544443  345889999985432210     1       1111 788999998775677788899999


Q ss_pred             EEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          235 LWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       235 i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      +..+......+..+. .....++++|+|.| ..++.|-..|++.-|....
T Consensus       182 V~~~~~~~~~v~s~p-~t~~~Tav~WSprG-KQl~iG~nnGt~vQy~P~l  229 (1405)
T KOG3630|consen  182 VKSTKQLAQNVTSFP-VTNSQTAVLWSPRG-KQLFIGRNNGTEVQYEPSL  229 (1405)
T ss_pred             hhhhhhhhhhhcccC-cccceeeEEecccc-ceeeEecCCCeEEEeeccc
Confidence            988776444444433 45678999999999 9999999999998886654

>PHA02713 hypothetical protein; Provisional

Probab=95.87  E-value=0.54  Score=43.18  Aligned_cols=182  Identities=5%  Similarity=-0.029  Sum_probs=85.1

Q ss_pred             CcEEEEecC------CeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCC-----eEEEEEccCCCc
Q 019059          134 HDKLVSIDE------ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCES-----SVQFWDLRSMGK  202 (346)
Q Consensus       134 ~~~~~~~~d------~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~  202 (346)
                      .++++||.+      ..+..||..++.  ..... ...........+..  ++...+.||.++     .+..||..+.+-
T Consensus       305 ~IYviGG~~~~~~~~~~v~~Yd~~~n~--W~~~~-~m~~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W  379 (557)
T PHA02713        305 EIIIAGGYNFNNPSLNKVYKINIENKI--HVELP-PMIKNRCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDKW  379 (557)
T ss_pred             EEEEEcCCCCCCCccceEEEEECCCCe--EeeCC-CCcchhhceeEEEE--CCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence            366777643      347788877543  11111 11111112222222  466666666543     488899887642


Q ss_pred             c--ceeeccc--eeEEEeCCCCCcEEEEecCCC-----------------------eEEEEEcccCC-cceeeecCCCcc
Q 019059          203 T--NSIEHAH--VRNVDYDTKKKHLLVTAADES-----------------------GIHLWDLRMLK-APIQELPGHTHW  254 (346)
Q Consensus       203 ~--~~~~~~~--v~~~~~~~~~~~~l~~~~~dg-----------------------~i~i~d~~~~~-~~~~~~~~~~~~  254 (346)
                      .  ..+..+.  ...+++  ++. +++.|+.++                       .+..||.++.. ..+..+......
T Consensus       380 ~~~~~mp~~r~~~~~~~~--~g~-IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~  456 (557)
T PHA02713        380 KMLPDMPIALSSYGMCVL--DQY-IYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIR  456 (557)
T ss_pred             EECCCCCcccccccEEEE--CCE-EEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccccc
Confidence            2  1222111  222222  454 777777542                       46677776421 011111111111


Q ss_pred             eEEEEeCCCCCcEEEEecCC------CeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCc
Q 019059          255 TWAVCCNPEYDGFILSAGTD------STVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPW  328 (346)
Q Consensus       255 v~~v~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  328 (346)
                      . +++ .-++ .+.+.|+.+      ..+..||..+.                ..+..+..+.........+.+  ++ .
T Consensus       457 ~-~~~-~~~~-~IYv~GG~~~~~~~~~~ve~Ydp~~~----------------~~W~~~~~m~~~r~~~~~~~~--~~-~  514 (557)
T PHA02713        457 P-GVV-SHKD-DIYVVCDIKDEKNVKTCIFRYNTNTY----------------NGWELITTTESRLSALHTILH--DN-T  514 (557)
T ss_pred             C-cEE-EECC-EEEEEeCCCCCCccceeEEEecCCCC----------------CCeeEccccCcccccceeEEE--CC-E
Confidence            1 111 2234 555666654      23566776640                014444444433333333333  34 4


Q ss_pred             EEEEeecCC--eEEEeeec
Q 019059          329 IFASLSYDG--RVRNHMLE  345 (346)
Q Consensus       329 ~l~s~~~d~--~v~vw~~~  345 (346)
                      +.+.||.|+  .+..||++
T Consensus       515 iyv~Gg~~~~~~~e~yd~~  533 (557)
T PHA02713        515 IMMLHCYESYMLQDTFNVY  533 (557)
T ss_pred             EEEEeeecceeehhhcCcc
Confidence            889999888  66666653

>PHA02713 hypothetical protein; Provisional

Probab=95.85  E-value=1.1  Score=41.09  Aligned_cols=89  Identities=11%  Similarity=-0.016  Sum_probs=46.9

Q ss_pred             eEEEEEccCCCc--cceeeccc-eeEEEeCCCCCcEEEEecCC------CeEEEEEccc-C-CcceeeecCCCcceEEEE
Q 019059          191 SVQFWDLRSMGK--TNSIEHAH-VRNVDYDTKKKHLLVTAADE------SGIHLWDLRM-L-KAPIQELPGHTHWTWAVC  259 (346)
Q Consensus       191 ~i~i~d~~~~~~--~~~~~~~~-v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~-~-~~~~~~~~~~~~~v~~v~  259 (346)
                      .+..||..+.+-  +..+..+. -.+++. -++. +.+.|+.+      ..+..||..+ . -..+..+.........+.
T Consensus       433 ~ve~YDP~td~W~~v~~m~~~r~~~~~~~-~~~~-IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~  510 (557)
T PHA02713        433 KVIRYDTVNNIWETLPNFWTGTIRPGVVS-HKDD-IYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL  510 (557)
T ss_pred             eEEEECCCCCeEeecCCCCcccccCcEEE-ECCE-EEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE
Confidence            477788877642  22222222 112222 2354 77777654      2467888875 1 122223322222222222


Q ss_pred             eCCCCCcEEEEecCCC--eEEEEecCC
Q 019059          260 CNPEYDGFILSAGTDS--TVNLWLVST  284 (346)
Q Consensus       260 ~~~~~~~~l~s~~~d~--~i~iwd~~~  284 (346)
                      +  ++ .+.++|+.|+  ++..||..+
T Consensus       511 ~--~~-~iyv~Gg~~~~~~~e~yd~~~  534 (557)
T PHA02713        511 H--DN-TIMMLHCYESYMLQDTFNVYT  534 (557)
T ss_pred             E--CC-EEEEEeeecceeehhhcCccc
Confidence            2  55 7888999888  777888877

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.80  E-value=0.23  Score=43.40  Aligned_cols=142  Identities=11%  Similarity=0.060  Sum_probs=88.7

Q ss_pred             CCCcEEEEe-cCCeEEEEEccCCCccceeeccc-eeEEEeCCCCCc------EEEEecCCCeEEEEEcccCCcceeeecC
Q 019059          179 HDVNAVAAT-CESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKH------LLVTAADESGIHLWDLRMLKAPIQELPG  250 (346)
Q Consensus       179 ~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~------~l~~~~~dg~i~i~d~~~~~~~~~~~~~  250 (346)
                      +...++..+ ....++-.|+..|+.+....... + -+.|.|...+      --++|-.+..|.-.|.|-.+..+.....
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~es  556 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVES  556 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeee
Confidence            334444333 45678888888888888777444 5 6777775431      1234556667777787754433332221


Q ss_pred             ----CCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCC
Q 019059          251 ----HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSRE  326 (346)
Q Consensus       251 ----~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  326 (346)
                          .....++..-...  .++|.+|..|-|++||.-.                   ......+++-...|..+..+.+|
T Consensus       557 KdY~tKn~Fss~~tTes--GyIa~as~kGDirLyDRig-------------------~rAKtalP~lG~aIk~idvta~G  615 (776)
T COG5167         557 KDYKTKNKFSSGMTTES--GYIAAASRKGDIRLYDRIG-------------------KRAKTALPGLGDAIKHIDVTANG  615 (776)
T ss_pred             hhccccccccccccccC--ceEEEecCCCceeeehhhc-------------------chhhhcCcccccceeeeEeecCC
Confidence                1222333333333  5899999999999999764                   34444566667789999999999


Q ss_pred             CcEEEEeecCCeEEEeee
Q 019059          327 PWIFASLSYDGRVRNHML  344 (346)
Q Consensus       327 ~~~l~s~~~d~~v~vw~~  344 (346)
                      +++|++|-  ..+.+-|+
T Consensus       616 k~ilaTCk--~yllL~d~  631 (776)
T COG5167         616 KHILATCK--NYLLLTDV  631 (776)
T ss_pred             cEEEEeec--ceEEEEec
Confidence            97777764  34554443

>PRK10115 protease 2; Provisional

Probab=95.75  E-value=1.9  Score=40.86  Aligned_cols=246  Identities=9%  Similarity=-0.005  Sum_probs=117.5

Q ss_pred             eeeccCCCCcceEEEeecccCC-CCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecC--CcceEEE
Q 019059           19 ISDVKADTDHTSFLTGTLSLKE-ENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTG--ESYGAAI   95 (346)
Q Consensus        19 ~~~~~~~~~~~~~~~g~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~--~d~~i~v   95 (346)
                      +....+++++..++.+....+. ...+++.++....  .....+.+   .-..++|+++++.++.+.....  ....|..
T Consensus       129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~--~l~~~i~~---~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~  203 (686)
T PRK10115        129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGN--WYPELLDN---VEPSFVWANDSWTFYYVRKHPVTLLPYQVWR  203 (686)
T ss_pred             EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCC--CCCccccC---cceEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence            4445567777777777544333 3456667665421  11111111   1146999999988887653211  2246777


Q ss_pred             EecCcccCCCCCccceeeeeeeccCCceE-EEEeecCCCCcEEEEe--cCCeEEEEEcCCCC-CCceeeecccCCCceee
Q 019059           96 WQIPELYGQLNSPQLERIAALDAHVGKIN-CVLWWSSGRHDKLVSI--DEENIFLWSLDCSN-KNAQVQSKQSSGMLHYL  171 (346)
Q Consensus        96 w~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~--~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~~v  171 (346)
                      +++..       +..+....+........ .+..+.+++++++.+.  .++.+.+++..... ......... .+   ..
T Consensus       204 h~lgt-------~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~---~~  272 (686)
T PRK10115        204 HTIGT-------PASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRR-KD---HE  272 (686)
T ss_pred             EECCC-------ChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECC-CC---CE
Confidence            77762       11122222332223333 2333447887665552  35789999854321 112222211 11   11


Q ss_pred             EEEEeCCCCCcEEEEec----CCeEEEEEccCCCccceeecc--c--eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCc
Q 019059          172 SGGAWDPHDVNAVAATC----ESSVQFWDLRSMGKTNSIEHA--H--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA  243 (346)
Q Consensus       172 ~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~~~~~--~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  243 (346)
                      ..+. +. +..++..++    ...|...++........+...  .  +..+.+..+  .++++...++.-+++-+.....
T Consensus       273 ~~~~-~~-~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~--~l~~~~~~~g~~~l~~~~~~~~  348 (686)
T PRK10115        273 YSLD-HY-QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTD--WLVVEERQRGLTSLRQINRKTR  348 (686)
T ss_pred             EEEE-eC-CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECC--EEEEEEEeCCEEEEEEEcCCCC
Confidence            2222 22 233444332    224544555522222222222  2  888888733  4788888788766554442222


Q ss_pred             ceeeec-CCCcceEEEEeC--CCCCcEEEEecC---CCeEEEEecCC
Q 019059          244 PIQELP-GHTHWTWAVCCN--PEYDGFILSAGT---DSTVNLWLVST  284 (346)
Q Consensus       244 ~~~~~~-~~~~~v~~v~~~--~~~~~~l~s~~~---d~~i~iwd~~~  284 (346)
                      .+..+. .....+..+.++  +++..++++.+.   -+.+..+|+.+
T Consensus       349 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~  395 (686)
T PRK10115        349 EVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDT  395 (686)
T ss_pred             ceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCC
Confidence            334333 222233333444  444245544443   35777888765

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.67  E-value=0.5  Score=43.29  Aligned_cols=117  Identities=15%  Similarity=0.110  Sum_probs=66.7

Q ss_pred             eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceee-ecCCCcceEEEEeC--CCCCcEEEEecCCCeEEEEecCCCCC
Q 019059          211 VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQE-LPGHTHWTWAVCCN--PEYDGFILSAGTDSTVNLWLVSTSNH  287 (346)
Q Consensus       211 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~v~~v~~~--~~~~~~l~s~~~d~~i~iwd~~~~~~  287 (346)
                      +.-+.-+.-++ ..++-+....+.|||.+... .... -......|..+.|.  |++ +.+.+.|....|.+|-......
T Consensus        32 ~~li~gss~~k-~a~V~~~~~~LtIWD~~~~~-lE~~~~f~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~Q~R~dy  108 (631)
T PF12234_consen   32 PSLISGSSIKK-IAVVDSSRSELTIWDTRSGV-LEYEESFSEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYTQLRYDY  108 (631)
T ss_pred             cceEeecccCc-EEEEECCCCEEEEEEcCCcE-EEEeeeecCCCceeeceeeecCCC-CEEEEEEcCcEEEEEEccchhh
Confidence            33344444454 44444445689999998632 1111 11346789999885  677 7788888889999986543100


Q ss_pred             CCCCcccccCCcccccccccccc--cccc-ceeeEEEeCCCCCcEEEEeecCCeEEEee
Q 019059          288 DELPSESLVESPNQRANSLLNSY--SDYE-DSVYGLAWSSREPWIFASLSYDGRVRNHM  343 (346)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~v~~~~~~~~~~~~l~s~~~d~~v~vw~  343 (346)
                      .       ...|   ...++..+  ..|+ .+|.+..|.++|. ++ .++ ++.+.|++
T Consensus       109 ~-------~~~p---~w~~i~~i~i~~~T~h~Igds~Wl~~G~-Lv-V~s-GNqlfv~d  154 (631)
T PF12234_consen  109 T-------NKGP---SWAPIRKIDISSHTPHPIGDSIWLKDGT-LV-VGS-GNQLFVFD  154 (631)
T ss_pred             h-------cCCc---ccceeEEEEeecCCCCCccceeEecCCe-EE-EEe-CCEEEEEC
Confidence            0       0001   12222222  2233 4699999999985 44 333 45677765

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.63  E-value=1.3  Score=38.34  Aligned_cols=155  Identities=12%  Similarity=0.118  Sum_probs=86.4

Q ss_pred             EEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEE
Q 019059           69 WDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLW  148 (346)
Q Consensus        69 ~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vw  148 (346)
                      +.+-|...++.++++.     .|.+.=|......      +..++..-....++|.++.|++|++ ++++--.+..|.++
T Consensus        26 ngvFfDDaNkqlfavr-----Sggatgvvvkgpn------dDVpiSfdm~d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~   93 (657)
T KOG2377|consen   26 NGVFFDDANKQLFAVR-----SGGATGVVVKGPN------DDVPISFDMDDKGEIKSIKFSLDNK-ILAVQRTSKTVDFC   93 (657)
T ss_pred             cceeeccCcceEEEEe-----cCCeeEEEEeCCC------CCCCceeeecCCCceeEEEeccCcc-eEEEEecCceEEEE
Confidence            4455555566666653     3344555554111      1122222234567999999999998 34444679999999


Q ss_pred             EcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCc-cceeeccc---eeEEEeCCCCCcEE
Q 019059          149 SLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGK-TNSIEHAH---VRNVDYDTKKKHLL  224 (346)
Q Consensus       149 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~---v~~~~~~~~~~~~l  224 (346)
                      +....+...... .........|.+..|... ..++.....| +.+|.....+. ++..+ .+   |+-..|.++....+
T Consensus        94 nf~~d~~~l~~~-~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVk-s~~~nvnWy~yc~et~v~L  169 (657)
T KOG2377|consen   94 NFIPDNSQLEYT-QECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVK-SHNLNVNWYMYCPETAVIL  169 (657)
T ss_pred             ecCCCchhhHHH-HHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhh-hcccCccEEEEccccceEe
Confidence            985443222222 222222346899999864 5566665444 66666554332 22222 33   88888888887444


Q ss_pred             EEec-CCCeEEEEEcc
Q 019059          225 VTAA-DESGIHLWDLR  239 (346)
Q Consensus       225 ~~~~-~dg~i~i~d~~  239 (346)
                      ++.+ ..+.+.=+.++
T Consensus       170 L~t~~~~n~lnpf~~~  185 (657)
T KOG2377|consen  170 LSTTVLENVLNPFHFR  185 (657)
T ss_pred             eeccccccccccEEEe
Confidence            4444 33343333333

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.49  E-value=0.76  Score=39.76  Aligned_cols=143  Identities=11%  Similarity=0.077  Sum_probs=75.2

Q ss_pred             CceEEEEeecCCCCcEEEEe-----------cCC-eEEEEEcCCC-CCCc--eeeecccCCCceeeEEEEeCCCCCcEEE
Q 019059          121 GKINCVLWWSSGRHDKLVSI-----------DEE-NIFLWSLDCS-NKNA--QVQSKQSSGMLHYLSGGAWDPHDVNAVA  185 (346)
Q Consensus       121 ~~i~~~~~~~~~~~~~~~~~-----------~d~-~i~vwd~~~~-~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~  185 (346)
                      .....|+|.++|+ ++++..           ..+ .|.+++-..+ ....  +.....    .....++++.+++  +++
T Consensus        14 ~~P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~----l~~p~Gi~~~~~G--lyV   86 (367)
T TIGR02604        14 RNPIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEE----LSMVTGLAVAVGG--VYV   86 (367)
T ss_pred             CCCceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecC----CCCccceeEecCC--EEE
Confidence            3457889999998 344432           123 6777764322 1111  122111    2245788998877  555


Q ss_pred             EecCCeEEEEEccCC-----Cc--c-ceeec-----cc-eeEEEeCCCCCcEEEEecCC-------------------Ce
Q 019059          186 ATCESSVQFWDLRSM-----GK--T-NSIEH-----AH-VRNVDYDTKKKHLLVTAADE-------------------SG  232 (346)
Q Consensus       186 ~~~d~~i~i~d~~~~-----~~--~-~~~~~-----~~-v~~~~~~~~~~~~l~~~~~d-------------------g~  232 (346)
                      +......++.|....     +.  + ..+..     .| ...++|.|+|. +.++-+..                   |.
T Consensus        87 ~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G~~~~~~~~~~~~~~~~~~~~~g~  165 (367)
T TIGR02604        87 ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHGNTLASKVTRPGTSDESRQGLGGG  165 (367)
T ss_pred             eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEecccCCCceeccCCCccCcccccCce
Confidence            554443334454321     11  1 11211     23 88999999997 55543311                   33


Q ss_pred             EEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCC
Q 019059          233 IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTD  274 (346)
Q Consensus       233 i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d  274 (346)
                      |.-+|...  ..+..+...-.....++|+|+| .++++-..+
T Consensus       166 i~r~~pdg--~~~e~~a~G~rnp~Gl~~d~~G-~l~~tdn~~  204 (367)
T TIGR02604       166 LFRYNPDG--GKLRVVAHGFQNPYGHSVDSWG-DVFFCDNDD  204 (367)
T ss_pred             EEEEecCC--CeEEEEecCcCCCccceECCCC-CEEEEccCC
Confidence            44444442  2233333223445789999999 777664433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.43  E-value=1.6  Score=38.06  Aligned_cols=43  Identities=16%  Similarity=0.214  Sum_probs=34.5

Q ss_pred             cceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccc
Q 019059          253 HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYED  315 (346)
Q Consensus       253 ~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (346)
                      ..+.++..+|.+ .+.|+...=|.|.++|+..                   +..+..++|..+
T Consensus       308 R~~~~i~~sP~~-~laA~tDslGRV~LiD~~~-------------------~~vvrmWKGYRd  350 (415)
T PF14655_consen  308 REGESICLSPSG-RLAAVTDSLGRVLLIDVAR-------------------GIVVRMWKGYRD  350 (415)
T ss_pred             ceEEEEEECCCC-CEEEEEcCCCcEEEEECCC-------------------ChhhhhhccCcc
Confidence            446789999998 8888887778999999998                   666776666543

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.42  E-value=0.63  Score=42.69  Aligned_cols=105  Identities=15%  Similarity=0.171  Sum_probs=63.8

Q ss_pred             eCCCCCcEEEEecCCeEEEEEccCCCccceeec--cc-eeEEEeC--CCCCcEEEEecCCCeEEEEEcc-----cCC---
Q 019059          176 WDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH--AH-VRNVDYD--TKKKHLLVTAADESGIHLWDLR-----MLK---  242 (346)
Q Consensus       176 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~-v~~~~~~--~~~~~~l~~~~~dg~i~i~d~~-----~~~---  242 (346)
                      -+.-++..++-.....+.|||.+.+........  .. |.++.|.  |++. .+++.+....|.++--.     +..   
T Consensus        37 gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~q-siLaVGf~~~v~l~~Q~R~dy~~~~p~w  115 (631)
T PF12234_consen   37 GSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQ-SILAVGFPHHVLLYTQLRYDYTNKGPSW  115 (631)
T ss_pred             ecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCC-EEEEEEcCcEEEEEEccchhhhcCCccc
Confidence            333344333434456899999998874433221  22 9999985  7787 45555566788887532     111   


Q ss_pred             cceeee--cCCC-cceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          243 APIQEL--PGHT-HWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       243 ~~~~~~--~~~~-~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      .+++.+  ..|+ .+|.+..|.++| .+++.+  .+++.|+|-..
T Consensus       116 ~~i~~i~i~~~T~h~Igds~Wl~~G-~LvV~s--GNqlfv~dk~~  157 (631)
T PF12234_consen  116 APIRKIDISSHTPHPIGDSIWLKDG-TLVVGS--GNQLFVFDKWL  157 (631)
T ss_pred             ceeEEEEeecCCCCCccceeEecCC-eEEEEe--CCEEEEECCCc
Confidence            133332  2344 678999999999 544443  35788987654

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.40  E-value=0.87  Score=35.07  Aligned_cols=163  Identities=13%  Similarity=0.163  Sum_probs=85.7

Q ss_pred             ceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCcee
Q 019059           91 YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHY  170 (346)
Q Consensus        91 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  170 (346)
                      ..|++||+.         .++.+.+-+-....+..=-...-+.++...+-.++.-..+|.++-+......-.   +   .
T Consensus        68 S~ir~~~L~---------~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~---G---e  132 (262)
T COG3823          68 SKIRVSDLT---------TGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYE---G---E  132 (262)
T ss_pred             ceeEEEecc---------CceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccC---C---c
Confidence            379999998         455554433222233332233334544555556888888998865543333221   1   3


Q ss_pred             eEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceee---ccc----eeEEEeCCCCCcEEEEec----------CCCeE
Q 019059          171 LSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE---HAH----VRNVDYDTKKKHLLVTAA----------DESGI  233 (346)
Q Consensus       171 v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~----v~~~~~~~~~~~~l~~~~----------~dg~i  233 (346)
                      -.+++  .|+..|+.+....+++.-|.++-....++.   .+.    ++.+.|- +|. +++-.=          ..|.|
T Consensus       133 GWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~-lyANVw~t~~I~rI~p~sGrV  208 (262)
T COG3823         133 GWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGE-LYANVWQTTRIARIDPDSGRV  208 (262)
T ss_pred             ceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccE-EEEeeeeecceEEEcCCCCcE
Confidence            33333  467778888777788888877655443332   111    4444443 232 332221          22333


Q ss_pred             EEE-EcccCCcceeeecCCCcceEEEEeCCCCCcEEEEec
Q 019059          234 HLW-DLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG  272 (346)
Q Consensus       234 ~i~-d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~  272 (346)
                      .-| |+......+..-..|..-.+.+++.|++.+++++|-
T Consensus       209 ~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK  248 (262)
T COG3823         209 VAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK  248 (262)
T ss_pred             EEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence            222 333211122222335566788999999866777764

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.37  E-value=2.3  Score=39.37  Aligned_cols=177  Identities=8%  Similarity=0.051  Sum_probs=91.7

Q ss_pred             cceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCce
Q 019059           90 SYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLH  169 (346)
Q Consensus        90 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~  169 (346)
                      -..|+|+++.          ++++..+.-....+-.+.|+.+..  +++-..+|.+++|++-... .... .........
T Consensus        63 ~~~I~If~~s----------G~lL~~~~w~~~~lI~mgWs~~ee--LI~v~k~g~v~Vy~~~ge~-ie~~-svg~e~~~~  128 (829)
T KOG2280|consen   63 RPYIRIFNIS----------GQLLGRILWKHGELIGMGWSDDEE--LICVQKDGTVHVYGLLGEF-IESN-SVGFESQMS  128 (829)
T ss_pred             ceeEEEEecc----------ccchHHHHhcCCCeeeecccCCce--EEEEeccceEEEeecchhh-hccc-ccccccccC
Confidence            3468888875          666666655555889999999888  6666789999999986432 1111 111111222


Q ss_pred             eeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeec-c-c---eeEEEeCCCCC--cEEEEec-CCCeEEEEEcccC
Q 019059          170 YLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH-A-H---VRNVDYDTKKK--HLLVTAA-DESGIHLWDLRML  241 (346)
Q Consensus       170 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~-~---v~~~~~~~~~~--~~l~~~~-~dg~i~i~d~~~~  241 (346)
                      .|..+.+..+|  +++-..+|.+.+-.-........+.. + .   ..|-...+++.  ..++-.. ..+ ..++.....
T Consensus       129 ~I~ec~~f~~G--Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~  205 (829)
T KOG2280|consen  129 DIVECRFFHNG--VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEES  205 (829)
T ss_pred             ceeEEEEecCc--eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecc
Confidence            45555554444  33333445554432222212222221 1 1   12222222211  1111111 111 122222221


Q ss_pred             CcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          242 KAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       242 ~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      ......+......+..+..||+. .+|+--..+|.|.+-+...
T Consensus       206 ~~q~~~~~~~~~~~~ki~VS~n~-~~laLyt~~G~i~~vs~D~  247 (829)
T KOG2280|consen  206 RVQLHALSWPNSSVVKISVSPNR-RFLALYTETGKIWVVSIDL  247 (829)
T ss_pred             cccccccCCCCceEEEEEEcCCc-ceEEEEecCCcEEEEecch
Confidence            22223333333567788899999 9999999999998887776

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.25  E-value=1.7  Score=37.57  Aligned_cols=151  Identities=9%  Similarity=0.034  Sum_probs=75.5

Q ss_pred             ceEEeeecCCCCceEEEEee-----c--CCcc-eEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEE
Q 019059           67 EIWDLSSCPFDQRIFSTVFS-----T--GESY-GAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV  138 (346)
Q Consensus        67 ~v~~~~~~~~~~~l~~~~~~-----~--~~d~-~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  138 (346)
                      ....|+|.++|+.+++...+     +  ...+ .|.+++-....     ........+...-.....+++.+++  ++++
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgd-----G~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~   87 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGD-----GKYDKSNVFAEELSMVTGLAVAVGG--VYVA   87 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCC-----CCcceeEEeecCCCCccceeEecCC--EEEe
Confidence            45678888888766553100     0  0112 45555432100     0111222332333345788888887  3444


Q ss_pred             EecCCeEEEE-EcCCCC----CCceeeecccCC---CceeeEEEEeCCCCCcEEEEecC-------------------Ce
Q 019059          139 SIDEENIFLW-SLDCSN----KNAQVQSKQSSG---MLHYLSGGAWDPHDVNAVAATCE-------------------SS  191 (346)
Q Consensus       139 ~~~d~~i~vw-d~~~~~----~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d-------------------~~  191 (346)
                      . . ..|..+ |.+...    ....+.......   +......++|.|||...++.+..                   +.
T Consensus        88 ~-~-~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~  165 (367)
T TIGR02604        88 T-P-PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGG  165 (367)
T ss_pred             C-C-CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCce
Confidence            3 3 344434 443221    111222111111   23457889999998766655421                   34


Q ss_pred             EEEEEccCCCccceeeccc--eeEEEeCCCCCcEEEEec
Q 019059          192 VQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAA  228 (346)
Q Consensus       192 i~i~d~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~  228 (346)
                      |.-+|..+++ ...+..+.  ...++|+|++. ++++-.
T Consensus       166 i~r~~pdg~~-~e~~a~G~rnp~Gl~~d~~G~-l~~tdn  202 (367)
T TIGR02604       166 LFRYNPDGGK-LRVVAHGFQNPYGHSVDSWGD-VFFCDN  202 (367)
T ss_pred             EEEEecCCCe-EEEEecCcCCCccceECCCCC-EEEEcc
Confidence            5555555443 22333333  78999999997 666544

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.10  E-value=0.4  Score=42.14  Aligned_cols=91  Identities=12%  Similarity=0.053  Sum_probs=50.6

Q ss_pred             ceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccc--cccccccccccccceeeEEEeCCCC--CcE
Q 019059          254 WTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQ--RANSLLNSYSDYEDSVYGLAWSSRE--PWI  329 (346)
Q Consensus       254 ~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~--~~~  329 (346)
                      .|..+..++.| ..++-.|.+|.+.++=.+.........+.......+  .-+..+++-..| -.+..++|+|+.  ...
T Consensus       105 eV~~vl~s~~G-S~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~-ltl~Qa~WHP~S~~D~h  182 (741)
T KOG4460|consen  105 EVYQVLLSPTG-SHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTS-LTLKQAAWHPSSILDPH  182 (741)
T ss_pred             EEEEEEecCCC-ceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCc-eeeeeccccCCccCCce
Confidence            46778889999 888888888855443322211111000000000000  112223322222 247889999976  346


Q ss_pred             EEEeecCCeEEEeeecC
Q 019059          330 FASLSYDGRVRNHMLEK  346 (346)
Q Consensus       330 l~s~~~d~~v~vw~~~~  346 (346)
                      |..-+.|..+|+|++.+
T Consensus       183 L~iL~sdnviRiy~lS~  199 (741)
T KOG4460|consen  183 LVLLTSDNVIRIYSLSE  199 (741)
T ss_pred             EEEEecCcEEEEEecCC
Confidence            77778899999999864

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.92  E-value=1.7  Score=35.39  Aligned_cols=145  Identities=10%  Similarity=0.074  Sum_probs=83.9

Q ss_pred             ceEEEEeecCCCCcEEEEecC--CeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEE-cc
Q 019059          122 KINCVLWWSSGRHDKLVSIDE--ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWD-LR  198 (346)
Q Consensus       122 ~i~~~~~~~~~~~~~~~~~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d-~~  198 (346)
                      .+...+++++++.+.++...+  ..++++...  .........      ..+..-.|++++...++...+...+++. ..
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g------~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~   96 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTG------GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSA   96 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--CcceeeccC------CccccccccCCCCEEEEEcCCCceEEEEecC
Confidence            688999999999655555223  445555433  333332211      1677779999977666655566666663 33


Q ss_pred             CCCcc-ceee---cc-ceeEEEeCCCCCcEEEEe--cCCCeEEEEEcccCC--------cceeeecCCCcceEEEEeCCC
Q 019059          199 SMGKT-NSIE---HA-HVRNVDYDTKKKHLLVTA--ADESGIHLWDLRMLK--------APIQELPGHTHWTWAVCCNPE  263 (346)
Q Consensus       199 ~~~~~-~~~~---~~-~v~~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~--------~~~~~~~~~~~~v~~v~~~~~  263 (346)
                      .++.. ..+.   .. .|..+.++|||..+.+..  ..++.|.+--+....        .+..........+..+.|.++
T Consensus        97 ~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~  176 (253)
T PF10647_consen   97 SGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDD  176 (253)
T ss_pred             CCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCC
Confidence            33321 1111   11 399999999998443333  234677766544211        122222233567899999999


Q ss_pred             CCcEEEEecCCC
Q 019059          264 YDGFILSAGTDS  275 (346)
Q Consensus       264 ~~~~l~s~~~d~  275 (346)
                      + .+++.+...+
T Consensus       177 ~-~L~V~~~~~~  187 (253)
T PF10647_consen  177 S-TLVVLGRSAG  187 (253)
T ss_pred             C-EEEEEeCCCC
Confidence            9 6666555433

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.92  E-value=0.16  Score=27.99  Aligned_cols=32  Identities=6%  Similarity=0.106  Sum_probs=25.1

Q ss_pred             CceEEEEeecCCC--CcEEEEecCCeEEEEEcCC
Q 019059          121 GKINCVLWWSSGR--HDKLVSIDEENIFLWSLDC  152 (346)
Q Consensus       121 ~~i~~~~~~~~~~--~~~~~~~~d~~i~vwd~~~  152 (346)
                      +.|.++.|+|...  .+++.+-..+.|.++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            4689999997654  5666666679999999985

It contains a characteristic DLL sequence motif.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.78  E-value=0.22  Score=47.74  Aligned_cols=151  Identities=9%  Similarity=0.005  Sum_probs=90.9

Q ss_pred             cceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeee---eeccCCceEEEEeecCCCCcEEEEecC
Q 019059           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAA---LDAHVGKINCVLWWSSGRHDKLVSIDE  142 (346)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~d  142 (346)
                      -.|..+...+|....++..  ..++-.|..+|+.+-..... .+..+++.   ......-..++.|+|.=....++...|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~--tsng~~v~~fD~~~fs~s~~-~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~d  177 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVS--TSNGEAVYSFDLEEFSESRY-ETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSD  177 (1405)
T ss_pred             ccceEEEeccCCceEEEEE--ecCCceEEEEehHhhhhhhh-hhccccccccchhccccccccccccCCccchhhhhccc
Confidence            4566666677766655543  34466789999874322110 01122211   112223456888998766545666779


Q ss_pred             CeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceee-----ccc-eeEEEe
Q 019059          143 ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE-----HAH-VRNVDY  216 (346)
Q Consensus       143 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-----~~~-v~~~~~  216 (346)
                      +.|++..+.........     .......++++|+|.|+.+++|-..|++.-|-..-. ....+.     ... |.+|.|
T Consensus       178 lsl~V~~~~~~~~~v~s-----~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~W  251 (1405)
T KOG3630|consen  178 LSLRVKSTKQLAQNVTS-----FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTW  251 (1405)
T ss_pred             cchhhhhhhhhhhhhcc-----cCcccceeeEEeccccceeeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEE
Confidence            99998877633222111     112337899999999999999999999988865432 222221     112 999999


Q ss_pred             CCCCCcEEE
Q 019059          217 DTKKKHLLV  225 (346)
Q Consensus       217 ~~~~~~~l~  225 (346)
                      -....++++
T Consensus       252 l~t~eflvv  260 (1405)
T KOG3630|consen  252 LSTQEFLVV  260 (1405)
T ss_pred             ecceeEEEE
Confidence            887764433

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.74  E-value=0.14  Score=28.16  Aligned_cols=32  Identities=13%  Similarity=0.047  Sum_probs=26.6

Q ss_pred             cceEEEEeCCCCC--cEEEEecCCCeEEEEecCC
Q 019059          253 HWTWAVCCNPEYD--GFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       253 ~~v~~v~~~~~~~--~~l~s~~~d~~i~iwd~~~  284 (346)
                      +.+.++.|+|...  .+|+.+-.-+.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            3688999998763  5888888889999999994

It contains a characteristic DLL sequence motif.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.70  E-value=1.7  Score=41.05  Aligned_cols=90  Identities=11%  Similarity=0.090  Sum_probs=52.1

Q ss_pred             cceEEEEeCCCCCcEEEEecCCCeEEEEecCCC-CCCCCCcccccCCccc--cccccccccccccceeeEEEeCCCC--C
Q 019059          253 HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTS-NHDELPSESLVESPNQ--RANSLLNSYSDYEDSVYGLAWSSRE--P  327 (346)
Q Consensus       253 ~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~--~  327 (346)
                      -.|..|.++|+| .+|+..|..| |.|-.+... ...............+  .-+...+ ...+...|..+.|+|.+  .
T Consensus        85 f~v~~i~~n~~g-~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~-~~~~~~~i~qv~WhP~s~~~  161 (717)
T PF10168_consen   85 FEVHQISLNPTG-SLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFF-TSNSSLEIKQVRWHPWSESD  161 (717)
T ss_pred             eeEEEEEECCCC-CEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhc-cCCCCceEEEEEEcCCCCCC
Confidence            468899999999 8888888765 555555431 0000000000000000  0111111 12345579999999963  2


Q ss_pred             cEEEEeecCCeEEEeeec
Q 019059          328 WIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       328 ~~l~s~~~d~~v~vw~~~  345 (346)
                      ..|+.-..|+++|+||+.
T Consensus       162 ~~l~vLtsdn~lR~y~~~  179 (717)
T PF10168_consen  162 SHLVVLTSDNTLRLYDIS  179 (717)
T ss_pred             CeEEEEecCCEEEEEecC
Confidence            377788889999999985

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.62  E-value=4.2  Score=38.53  Aligned_cols=80  Identities=15%  Similarity=0.231  Sum_probs=51.1

Q ss_pred             CCceEEEEeecCCCCcEEEEecCCeEEEEEcCCC----------CCCc--eeeec----ccCCCceeeEEEEeCCC---C
Q 019059          120 VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCS----------NKNA--QVQSK----QSSGMLHYLSGGAWDPH---D  180 (346)
Q Consensus       120 ~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~----------~~~~--~~~~~----~~~~~~~~v~~~~~~~~---~  180 (346)
                      .-.|..+..+|+|..++++|  ...|.|..+...          ....  +...-    ........|..+.|+|.   +
T Consensus        84 ~f~v~~i~~n~~g~~lal~G--~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~  161 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVG--PRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD  161 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEc--CCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence            45789999999999644444  345555555321          1100  00000    01233457889999997   4


Q ss_pred             CcEEEEecCCeEEEEEccCCC
Q 019059          181 VNAVAATCESSVQFWDLRSMG  201 (346)
Q Consensus       181 ~~l~~~~~d~~i~i~d~~~~~  201 (346)
                      .+|++-..|+.+|+||+...+
T Consensus       162 ~~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  162 SHLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             CeEEEEecCCEEEEEecCCCC
Confidence            788888999999999997554

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PHA03098 kelch-like protein; Provisional

Probab=94.53  E-value=2.7  Score=38.57  Aligned_cols=60  Identities=10%  Similarity=0.071  Sum_probs=31.4

Q ss_pred             CCCcEEEEecC-----CeEEEEEccCCCccc--eeeccc-eeEEEeCCCCCcEEEEecCC------CeEEEEEccc
Q 019059          179 HDVNAVAATCE-----SSVQFWDLRSMGKTN--SIEHAH-VRNVDYDTKKKHLLVTAADE------SGIHLWDLRM  240 (346)
Q Consensus       179 ~~~~l~~~~~d-----~~i~i~d~~~~~~~~--~~~~~~-v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~  240 (346)
                      ++...+.||.+     ..+..||..+.+-..  .+..+. -.+++. -++. +++.|+.+      ..+..||+.+
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~-~~~~-iYv~GG~~~~~~~~~~v~~yd~~t  415 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVN-VNNL-IYVIGGISKNDELLKTVECFSLNT  415 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEE-ECCE-EEEECCcCCCCcccceEEEEeCCC
Confidence            45666666643     357788887665221  111111 111222 2344 77777632      3578888775

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.43  E-value=4.4  Score=37.95  Aligned_cols=116  Identities=9%  Similarity=0.186  Sum_probs=72.4

Q ss_pred             eeEEEeCCC-CCcEEEEecCCCeEEEEEcccCC-------------------cceeeecCCCcceEEEEeC--CCCCcEE
Q 019059          211 VRNVDYDTK-KKHLLVTAADESGIHLWDLRMLK-------------------APIQELPGHTHWTWAVCCN--PEYDGFI  268 (346)
Q Consensus       211 v~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~-------------------~~~~~~~~~~~~v~~v~~~--~~~~~~l  268 (346)
                      |+.|....- +..+|+.+.+||.|.+|.++..-                   +|...+. ....+++++++  ... ++|
T Consensus       103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~-rlI  180 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKS-RLI  180 (717)
T ss_pred             eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcc-eEE
Confidence            555544332 22378889999999999653210                   0122222 23567889987  666 888


Q ss_pred             EEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCC--C---cEEEEeecCCeEEEee
Q 019059          269 LSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSRE--P---WIFASLSYDGRVRNHM  343 (346)
Q Consensus       269 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~---~~l~s~~~d~~v~vw~  343 (346)
                      |+++....|.||-.......               ...... ..|...|-+|+|-++.  .   ..|++++-.|.+-+|+
T Consensus       181 AVSsNs~~VTVFaf~l~~~r---------------~~~~~s-~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~  244 (717)
T PF08728_consen  181 AVSSNSQEVTVFAFALVDER---------------FYHVPS-HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFK  244 (717)
T ss_pred             EEecCCceEEEEEEeccccc---------------cccccc-cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEE
Confidence            88888888888866651000               000001 1255568999997754  1   2688889999999887


Q ss_pred             e
Q 019059          344 L  344 (346)
Q Consensus       344 ~  344 (346)
                      +
T Consensus       245 I  245 (717)
T PF08728_consen  245 I  245 (717)
T ss_pred             E
Confidence            6

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.31  E-value=1.4  Score=38.16  Aligned_cols=136  Identities=9%  Similarity=0.076  Sum_probs=83.6

Q ss_pred             EEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccc
Q 019059          125 CVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN  204 (346)
Q Consensus       125 ~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  204 (346)
                      .+-|...++. +++. ..|.+.=|-....+.....  .......++|.++.|++|.+.+++--.+..|.+++....+...
T Consensus        27 gvFfDDaNkq-lfav-rSggatgvvvkgpndDVpi--Sfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l  102 (657)
T KOG2377|consen   27 GVFFDDANKQ-LFAV-RSGGATGVVVKGPNDDVPI--SFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL  102 (657)
T ss_pred             ceeeccCcce-EEEE-ecCCeeEEEEeCCCCCCCc--eeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh
Confidence            4445444443 4433 2456666665533311111  1111223389999999999999998899999999985444332


Q ss_pred             eeeccc------eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEE
Q 019059          205 SIEHAH------VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFI  268 (346)
Q Consensus       205 ~~~~~~------v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l  268 (346)
                      .....+      |....|....+  ++.-.. .-+.+|-.......++..+.|...|+--.|+++- +.+
T Consensus       103 ~~~~~ck~k~~~IlGF~W~~s~e--~A~i~~-~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et-~v~  168 (657)
T KOG2377|consen  103 EYTQECKTKNANILGFCWTSSTE--IAFITD-QGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPET-AVI  168 (657)
T ss_pred             HHHHHhccCcceeEEEEEecCee--EEEEec-CCeEEEEEchhhhhhhhhhhcccCccEEEEcccc-ceE
Confidence            222111      89999988765  333333 3466666554455677777888888888898887 443

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=94.17  E-value=3.2  Score=35.37  Aligned_cols=55  Identities=20%  Similarity=0.232  Sum_probs=34.1

Q ss_pred             ceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeee--cccCCCceeeEEEEeCCC
Q 019059          122 KINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQS--KQSSGMLHYLSGGAWDPH  179 (346)
Q Consensus       122 ~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~  179 (346)
                      .-+.|+|.|+|+  ++++-..|.|++++.. +.....+..  .........+..++++|+
T Consensus         3 ~P~~~a~~pdG~--l~v~e~~G~i~~~~~~-g~~~~~v~~~~~v~~~~~~gllgia~~p~   59 (331)
T PF07995_consen    3 NPRSMAFLPDGR--LLVAERSGRIWVVDKD-GSLKTPVADLPEVFADGERGLLGIAFHPD   59 (331)
T ss_dssp             SEEEEEEETTSC--EEEEETTTEEEEEETT-TEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred             CceEEEEeCCCc--EEEEeCCceEEEEeCC-CcCcceecccccccccccCCcccceeccc
Confidence            357899999987  6666669999999933 322112211  112233457899999994

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=93.98  E-value=4.2  Score=36.05  Aligned_cols=150  Identities=15%  Similarity=0.168  Sum_probs=83.9

Q ss_pred             cCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCC------cEEEEecCCeEEE
Q 019059           74 CPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRH------DKLVSIDEENIFL  147 (346)
Q Consensus        74 ~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~------~~~~~~~d~~i~v  147 (346)
                      +-+...|+...  |+....+.--|++         .++.+..+..|...  -+.|.|..+.      --++|-.+..|.-
T Consensus       475 h~~dssli~~d--g~~~~kLykmDIE---------rGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFr  541 (776)
T COG5167         475 HDNDSSLIYLD--GGERDKLYKMDIE---------RGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFR  541 (776)
T ss_pred             ecCCcceEEec--CCCcccceeeecc---------cceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEE
Confidence            33344444432  5565666667777         78888888877665  4566665321      1344533666666


Q ss_pred             EEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceee-ccc-eeEEEeCCCCCcEEE
Q 019059          148 WSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE-HAH-VRNVDYDTKKKHLLV  225 (346)
Q Consensus       148 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~-v~~~~~~~~~~~~l~  225 (346)
                      .|.+-....................+.. .....++++++..|.|++||.-.......++ .+. |..+..+.+|.++|+
T Consensus       542 IDPR~~gNKi~v~esKdY~tKn~Fss~~-tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ila  620 (776)
T COG5167         542 IDPRARGNKIKVVESKDYKTKNKFSSGM-TTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILA  620 (776)
T ss_pred             ecccccCCceeeeeehhccccccccccc-cccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEE
Confidence            6665333211221111111111222222 2245689999999999999965333322222 122 899999999996565


Q ss_pred             EecCCCeEEEEEcc
Q 019059          226 TAADESGIHLWDLR  239 (346)
Q Consensus       226 ~~~~dg~i~i~d~~  239 (346)
                      ++-  ..+-+-|++
T Consensus       621 TCk--~yllL~d~~  632 (776)
T COG5167         621 TCK--NYLLLTDVP  632 (776)
T ss_pred             eec--ceEEEEecc
Confidence            543  367777765

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=93.93  E-value=1.1  Score=34.07  Aligned_cols=29  Identities=28%  Similarity=0.368  Sum_probs=24.1

Q ss_pred             eeeEEEeCCC-----CCcEEEEeecCCeEEEeee
Q 019059          316 SVYGLAWSSR-----EPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       316 ~v~~~~~~~~-----~~~~l~s~~~d~~v~vw~~  344 (346)
                      .|.+++|||.     ++-+|++...++.|.||.-
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~  120 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGP  120 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEec
Confidence            6899999994     3347899999999999964

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PRK13684 Ycf48-like protein; Provisional

Probab=93.84  E-value=3.7  Score=35.00  Aligned_cols=150  Identities=7%  Similarity=0.046  Sum_probs=80.7

Q ss_pred             CCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccC
Q 019059          120 VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRS  199 (346)
Q Consensus       120 ~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~  199 (346)
                      ...+.++.+.+++.  +++.+..|.+..- .+.+.........   .....++.+.+.++++.+++ +..|.+++=....
T Consensus       172 ~g~~~~i~~~~~g~--~v~~g~~G~i~~s-~~~gg~tW~~~~~---~~~~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~  244 (334)
T PRK13684        172 AGVVRNLRRSPDGK--YVAVSSRGNFYST-WEPGQTAWTPHQR---NSSRRLQSMGFQPDGNLWML-ARGGQIRFNDPDD  244 (334)
T ss_pred             cceEEEEEECCCCe--EEEEeCCceEEEE-cCCCCCeEEEeeC---CCcccceeeeEcCCCCEEEE-ecCCEEEEccCCC
Confidence            34678888888876  4555556665532 1222222222221   22347899999998876555 4567665323344


Q ss_pred             CCccceee-----ccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeec---CCCcceEEEEeCCCCCcEEEE
Q 019059          200 MGKTNSIE-----HAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP---GHTHWTWAVCCNPEYDGFILS  270 (346)
Q Consensus       200 ~~~~~~~~-----~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~v~~v~~~~~~~~~l~s  270 (346)
                      +..-....     ... +..+.+.+++. +++++ .+|.+.. .... ...-....   .-....+.+.|..++ ..++ 
T Consensus       245 G~sW~~~~~~~~~~~~~l~~v~~~~~~~-~~~~G-~~G~v~~-S~d~-G~tW~~~~~~~~~~~~~~~~~~~~~~-~~~~-  318 (334)
T PRK13684        245 LESWSKPIIPEITNGYGYLDLAYRTPGE-IWAGG-GNGTLLV-SKDG-GKTWEKDPVGEEVPSNFYKIVFLDPE-KGFV-  318 (334)
T ss_pred             CCccccccCCccccccceeeEEEcCCCC-EEEEc-CCCeEEE-eCCC-CCCCeECCcCCCCCcceEEEEEeCCC-ceEE-
Confidence            33212111     112 78899999876 55544 5565542 2222 22222221   122356777777665 5555 


Q ss_pred             ecCCCeEEEEec
Q 019059          271 AGTDSTVNLWLV  282 (346)
Q Consensus       271 ~~~d~~i~iwd~  282 (346)
                      .+..|.|.-|+-
T Consensus       319 ~G~~G~il~~~~  330 (334)
T PRK13684        319 LGQRGVLLRYVG  330 (334)
T ss_pred             ECCCceEEEecC
Confidence            455788877654

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=93.80  E-value=5.9  Score=37.14  Aligned_cols=112  Identities=8%  Similarity=0.060  Sum_probs=70.9

Q ss_pred             eeEEEEeCC--CCCcEEEEecCCeEEEEEccC-------C-------------Cccceeeccc-eeEEEeC--CCCCcEE
Q 019059          170 YLSGGAWDP--HDVNAVAATCESSVQFWDLRS-------M-------------GKTNSIEHAH-VRNVDYD--TKKKHLL  224 (346)
Q Consensus       170 ~v~~~~~~~--~~~~l~~~~~d~~i~i~d~~~-------~-------------~~~~~~~~~~-v~~~~~~--~~~~~~l  224 (346)
                      .|+.+....  ....|+++.+||.|.+|.+++       .             ++...+..+. +.+++++  ...+ ++
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~r-lI  180 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSR-LI  180 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcce-EE
Confidence            455554432  345677888999999997631       0             0111122222 8899998  6666 88


Q ss_pred             EEecCCCeEEEEEcccC--CcceeeecCCCcceEEEEeCCCC--Cc---EEEEecCCCeEEEEec
Q 019059          225 VTAADESGIHLWDLRML--KAPIQELPGHTHWTWAVCCNPEY--DG---FILSAGTDSTVNLWLV  282 (346)
Q Consensus       225 ~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~v~~v~~~~~~--~~---~l~s~~~d~~i~iwd~  282 (346)
                      |+++....|.||-....  +.....-..|...|-+|+|-++.  +.   .+++++-.|.+.+|++
T Consensus       181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            88888888888865531  11111111356778888887654  12   7888889999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=93.80  E-value=0.021  Score=49.15  Aligned_cols=145  Identities=12%  Similarity=0.128  Sum_probs=97.5

Q ss_pred             eEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEE
Q 019059           68 IWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFL  147 (346)
Q Consensus        68 v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~v  147 (346)
                      .....|-|.+..++.+    +.+..+..||-.          ++..... ..++....++|.-++..+++.+-..+.+.+
T Consensus        37 pi~~~w~~e~~nlava----ca~tiv~~YD~a----------gq~~le~-n~tg~aldm~wDkegdvlavlAek~~piyl  101 (615)
T KOG2247|consen   37 PIIHRWRPEGHNLAVA----CANTIVIYYDKA----------GQVILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYL  101 (615)
T ss_pred             cceeeEecCCCceehh----hhhhHHHhhhhh----------cceeccc-CCchhHhhhhhccccchhhhhhhcCCCeee
Confidence            3345788888887775    477788888854          2333333 335566788999898876777777899999


Q ss_pred             EEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEE
Q 019059          148 WSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLL  224 (346)
Q Consensus       148 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l  224 (346)
                      ||+.+.. ..++...  ..+  .-.-+.|++-...++.+...+.+.++...+.+...... .|   +.++++.+.+.  .
T Consensus       102 wd~n~ey-tqqLE~g--g~~--s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~G-kh~RRgtq~av~lEd~--v  173 (615)
T KOG2247|consen  102 WDVNSEY-TQQLESG--GTS--SKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMG-KHQRRGTQIAVTLEDY--V  173 (615)
T ss_pred             chhhhhh-HHHHhcc--Ccc--hHHHHhhccCCccccccccccceEEEeccchhhhhhhc-ccccceeEEEecccce--e
Confidence            9998543 1222111  112  22226889888888888889999999988776554443 13   99999999884  5


Q ss_pred             EEecCCCeEEE
Q 019059          225 VTAADESGIHL  235 (346)
Q Consensus       225 ~~~~~dg~i~i  235 (346)
                      +.++.|..+.+
T Consensus       174 il~dcd~~L~v  184 (615)
T KOG2247|consen  174 ILCDCDNTLSV  184 (615)
T ss_pred             eecCcHHHHHH
Confidence            55555555443

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=93.46  E-value=0.3  Score=26.25  Aligned_cols=31  Identities=13%  Similarity=0.185  Sum_probs=21.9

Q ss_pred             ccCCceEEEEeecCCCCcEEEEecC--CeEEEE
Q 019059          118 AHVGKINCVLWWSSGRHDKLVSIDE--ENIFLW  148 (346)
Q Consensus       118 ~~~~~i~~~~~~~~~~~~~~~~~~d--~~i~vw  148 (346)
                      .....-....|+|||+++++++..+  |.-.||
T Consensus         6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            4455677889999999888887666  666665

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.15  E-value=2.4  Score=41.79  Aligned_cols=163  Identities=9%  Similarity=0.150  Sum_probs=91.8

Q ss_pred             eeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEE--------EeCCCCCc
Q 019059          111 ERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGG--------AWDPHDVN  182 (346)
Q Consensus       111 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~--------~~~~~~~~  182 (346)
                      +.+..+. |...-..+-+-|.=.+..++  -|+.+.+|+.+++.....+...     ...|..+        .|.|.=++
T Consensus        70 el~eq~~-~~~~~~~mGiFpeI~RaWiT--iDn~L~lWny~~~~e~~~~d~~-----shtIl~V~LvkPkpgvFv~~Iqh  141 (1311)
T KOG1900|consen   70 ELLEQFS-NIECKTDMGIFPEIGRAWIT--IDNNLFLWNYESDNELAEYDGL-----SHTILKVGLVKPKPGVFVPEIQH  141 (1311)
T ss_pred             HHHHHhc-CcceeeeeccchhhcceEEE--eCCeEEEEEcCCCCccccccch-----hhhheeeeeecCCCCcchhhhhe
Confidence            3333442 44444455555554433333  3899999999986544433322     1133333        24444456


Q ss_pred             EEEEecCCeEEEEEcc----CCCcc-----ceeec-cc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccC--------Cc
Q 019059          183 AVAATCESSVQFWDLR----SMGKT-----NSIEH-AH-VRNVDYDTKKKHLLVTAADESGIHLWDLRML--------KA  243 (346)
Q Consensus       183 l~~~~~d~~i~i~d~~----~~~~~-----~~~~~-~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--------~~  243 (346)
                      +++.+.--.|.++-+.    ++...     .++.. +- |+++....+|+ +|++| .||.++-.-....        ++
T Consensus       142 lLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR-IF~~G-~dg~lyEl~Yq~~~gWf~~rc~K  219 (1311)
T KOG1900|consen  142 LLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR-IFFAG-RDGNLYELVYQAEDGWFGSRCRK  219 (1311)
T ss_pred             eEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc-EEEee-cCCCEEEEEEeccCchhhccccc
Confidence            6665555556665443    22111     11211 22 99999888887 66554 5564432211110        00


Q ss_pred             -------------ceeeec-CCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          244 -------------PIQELP-GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       244 -------------~~~~~~-~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                                   .+..+. .+..+|..+...... ..+.+-++.++|++||+..
T Consensus       220 iclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR-~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  220 ICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR-NILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             ccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc-ceeeeeccCceEEEEEccC
Confidence                         011222 467789999998777 8999999999999999986

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.03  E-value=0.88  Score=36.02  Aligned_cols=74  Identities=15%  Similarity=0.188  Sum_probs=45.4

Q ss_pred             eCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccc----ccccceeeEEEeCCCCCcEEEEeec
Q 019059          260 CNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSY----SDYEDSVYGLAWSSREPWIFASLSY  335 (346)
Q Consensus       260 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~s~~~  335 (346)
                      +..++ .+|++.+.+|.+++||+...+.......-         ...+...    ......|..+..+.+|. -+++-+ 
T Consensus        18 l~~~~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si---------~pll~~~~~~~~~~~~~i~~~~lt~~G~-PiV~ls-   85 (219)
T PF07569_consen   18 LECNG-SYLLAITSSGLLYVWNLKKGKAVLPPVSI---------APLLNSSPVSDKSSSPNITSCSLTSNGV-PIVTLS-   85 (219)
T ss_pred             EEeCC-CEEEEEeCCCeEEEEECCCCeeccCCccH---------HHHhcccccccCCCCCcEEEEEEcCCCC-EEEEEe-
Confidence            34456 78999999999999999983221110000         0000000    03445688999998886 666665 


Q ss_pred             CCeEEEeeec
Q 019059          336 DGRVRNHMLE  345 (346)
Q Consensus       336 d~~v~vw~~~  345 (346)
                      +|..+.|+.+
T Consensus        86 ng~~y~y~~~   95 (219)
T PF07569_consen   86 NGDSYSYSPD   95 (219)
T ss_pred             CCCEEEeccc
Confidence            5778888753

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PHA03098 kelch-like protein; Provisional

Probab=92.98  E-value=7.2  Score=35.81  Aligned_cols=139  Identities=10%  Similarity=0.000  Sum_probs=64.9

Q ss_pred             CcEEEEecC-----CeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec--C----CeEEEEEccCCCc
Q 019059          134 HDKLVSIDE-----ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC--E----SSVQFWDLRSMGK  202 (346)
Q Consensus       134 ~~~~~~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d----~~i~i~d~~~~~~  202 (346)
                      .+++.||.+     ..+..||..+++-  ..... ..........+..  ++...+.||.  +    ..+..||+.+.+-
T Consensus       344 ~lyv~GG~~~~~~~~~v~~yd~~~~~W--~~~~~-lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W  418 (534)
T PHA03098        344 RIYVIGGIYNSISLNTVESWKPGESKW--REEPP-LIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKW  418 (534)
T ss_pred             EEEEEeCCCCCEecceEEEEcCCCCce--eeCCC-cCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCee
Confidence            367777644     3577788775431  11111 1111111111222  4555566652  1    4588899886542


Q ss_pred             cc--eeeccc-eeEEEeCCCCCcEEEEecCC--------CeEEEEEcccCCcceeeecC---CCcceEEEEeCCCCCcEE
Q 019059          203 TN--SIEHAH-VRNVDYDTKKKHLLVTAADE--------SGIHLWDLRMLKAPIQELPG---HTHWTWAVCCNPEYDGFI  268 (346)
Q Consensus       203 ~~--~~~~~~-v~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~---~~~~v~~v~~~~~~~~~l  268 (346)
                      ..  .+..+. -.+++. .++. +++.|+.+        ..+.+||..+..  ...+..   .......+.+  ++ .++
T Consensus       419 ~~~~~~p~~r~~~~~~~-~~~~-iyv~GG~~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~r~~~~~~~~--~~-~iy  491 (534)
T PHA03098        419 SKGSPLPISHYGGCAIY-HDGK-IYVIGGISYIDNIKVYNIVESYNPVTNK--WTELSSLNFPRINASLCIF--NN-KIY  491 (534)
T ss_pred             eecCCCCccccCceEEE-ECCE-EEEECCccCCCCCcccceEEEecCCCCc--eeeCCCCCcccccceEEEE--CC-EEE
Confidence            21  111111 112222 2344 67777643        237888877521  222211   1111122222  45 666


Q ss_pred             EEecCC-----CeEEEEecCC
Q 019059          269 LSAGTD-----STVNLWLVST  284 (346)
Q Consensus       269 ~s~~~d-----~~i~iwd~~~  284 (346)
                      +.|+.+     ..+.+||..+
T Consensus       492 v~GG~~~~~~~~~v~~yd~~~  512 (534)
T PHA03098        492 VVGGDKYEYYINEIEVYDDKT  512 (534)
T ss_pred             EEcCCcCCcccceeEEEeCCC
Confidence            777654     4688888776

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=92.83  E-value=3.7  Score=32.01  Aligned_cols=116  Identities=9%  Similarity=0.099  Sum_probs=64.0

Q ss_pred             EEEEecCCCeEEEEEccc-CCcceeeecCCCcceEEEEeCCCCCcEEEEecCC------CeEEEE-ecCCCCCCCCCccc
Q 019059          223 LLVTAADESGIHLWDLRM-LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTD------STVNLW-LVSTSNHDELPSES  294 (346)
Q Consensus       223 ~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d------~~i~iw-d~~~~~~~~~~~~~  294 (346)
                      +|++ ...+.|.+|++.. ..+++.+|.. -+.|..+.++..| .+|+|--.+      ..+|+| +.+....+......
T Consensus        31 Lfva-~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~G-DYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   31 LFVA-ASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAG-DYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             EEEE-cCCCEEEEEEcccCCCceeEEEcc-hhheeEEEecccc-ceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            4443 5557899999983 2345556653 5889999999999 999986442      256776 33332111111110


Q ss_pred             -----c-cCCcccccccc--ccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059          295 -----L-VESPNQRANSL--LNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       295 -----~-~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~  344 (346)
                           . ..+........  +-.++- +.++.+++..|-...++ .|+ ++.+.+|.+
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElPl-~~~p~ciaCC~~tG~Ll-Vg~-~~~l~lf~l  162 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELPL-SEPPLCIACCPVTGNLL-VGC-GNKLVLFTL  162 (215)
T ss_pred             EEcccccccCCCCccccceEEEEecC-CCCCCEEEecCCCCCEE-EEc-CCEEEEEEE
Confidence                 0 00000011111  112222 44578899888655344 444 577888875

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=92.66  E-value=0.79  Score=36.29  Aligned_cols=61  Identities=10%  Similarity=0.113  Sum_probs=41.6

Q ss_pred             CCCCCcEEEEecCCeEEEEEccCCCcccee------ec--------c-c-eeEEEeCCCCCcEEEEecCCCeEEEEEcc
Q 019059          177 DPHDVNAVAATCESSVQFWDLRSMGKTNSI------EH--------A-H-VRNVDYDTKKKHLLVTAADESGIHLWDLR  239 (346)
Q Consensus       177 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~------~~--------~-~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  239 (346)
                      ..++.++++.+.+|.+++||+.+++.+..-      -.        . . |..+..+.+|. -+++- .+|..+.|+..
T Consensus        19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~-PiV~l-sng~~y~y~~~   95 (219)
T PF07569_consen   19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV-PIVTL-SNGDSYSYSPD   95 (219)
T ss_pred             EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC-EEEEE-eCCCEEEeccc
Confidence            346788999999999999999988754322      10        1 1 77777777775 44443 34677777755

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.53  E-value=3.8  Score=36.39  Aligned_cols=74  Identities=8%  Similarity=0.027  Sum_probs=47.5

Q ss_pred             eeEEEeCCCCCcEEEEecCCCeEEEEEcccCC--------cce---eee-------c-CCCcceEEEEeCCCC--CcEEE
Q 019059          211 VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK--------API---QEL-------P-GHTHWTWAVCCNPEY--DGFIL  269 (346)
Q Consensus       211 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------~~~---~~~-------~-~~~~~v~~v~~~~~~--~~~l~  269 (346)
                      |..+..++.|. .++-.+.+|.+.++=.+..+        ++.   +++       . ...-.+..++|+|+.  ...|.
T Consensus       106 V~~vl~s~~GS-~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  106 VYQVLLSPTGS-HVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEecCCCc-eEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            77888889988 66666667765544322211        111   111       1 111235678899987  67788


Q ss_pred             EecCCCeEEEEecCCC
Q 019059          270 SAGTDSTVNLWLVSTS  285 (346)
Q Consensus       270 s~~~d~~i~iwd~~~~  285 (346)
                      .-+.|+.||+||+...
T Consensus       185 iL~sdnviRiy~lS~~  200 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLSEP  200 (741)
T ss_pred             EEecCcEEEEEecCCc
Confidence            8888999999999873

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=92.31  E-value=11  Score=36.31  Aligned_cols=177  Identities=10%  Similarity=0.064  Sum_probs=95.6

Q ss_pred             EEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec-----------C---CeEEEEEccCCC
Q 019059          136 KLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-----------E---SSVQFWDLRSMG  201 (346)
Q Consensus       136 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------d---~~i~i~d~~~~~  201 (346)
                      .++....+.+.+..++.-++...-. -..   ......+++.+....+++.+.           .   ..++++|-++-+
T Consensus       686 ~l~~~~~~~l~i~tid~iqkl~irt-vpl---~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~  761 (1096)
T KOG1897|consen  686 SLASANGGALTIGTIDEIQKLHIRT-VPL---GESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFE  761 (1096)
T ss_pred             eEEEecCCceEEEEecchhhcceee-ecC---CCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCcee
Confidence            3444446778777776432211111 111   114455566653333333321           1   247778877766


Q ss_pred             ccceeeccc------eeEEEeCCCCCcEEEEec----------CCCeEEEEEcccCCcceeeecCC--CcceEEEEeCCC
Q 019059          202 KTNSIEHAH------VRNVDYDTKKKHLLVTAA----------DESGIHLWDLRMLKAPIQELPGH--THWTWAVCCNPE  263 (346)
Q Consensus       202 ~~~~~~~~~------v~~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~--~~~v~~v~~~~~  263 (346)
                      .....+...      +.+..|..|.+.++++|.          ..|.|.+|.... ...++....+  .+.+.++..- +
T Consensus       762 vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e-~~~L~~v~e~~v~Gav~aL~~f-n  839 (1096)
T KOG1897|consen  762 VLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE-LNSLELVAETVVKGAVYALVEF-N  839 (1096)
T ss_pred             EEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec-CCceeeeeeeeeccceeehhhh-C
Confidence            544333221      666668877443666664          347888888876 3344444332  2445554322 4


Q ss_pred             CCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEE
Q 019059          264 YDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRN  341 (346)
Q Consensus       264 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~v  341 (346)
                      | +++|.-  ..+|++|+..+                   .+.++.-..+..++..+...-.+. .++.|..=+++.+
T Consensus       840 g-kllA~I--n~~vrLye~t~-------------------~~eLr~e~~~~~~~~aL~l~v~gd-eI~VgDlm~Sitl  894 (1096)
T KOG1897|consen  840 G-KLLAGI--NQSVRLYEWTT-------------------ERELRIECNISNPIIALDLQVKGD-EIAVGDLMRSITL  894 (1096)
T ss_pred             C-eEEEec--CcEEEEEEccc-------------------cceehhhhcccCCeEEEEEEecCc-EEEEeeccceEEE
Confidence            4 666544  46899999987                   445555555666677777766665 5566655444443

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=92.09  E-value=0.62  Score=25.34  Aligned_cols=39  Identities=13%  Similarity=0.072  Sum_probs=27.4

Q ss_pred             CCCCcEEEEe-cCCeEEEEEccCCCccceeeccc-eeEEEe
Q 019059          178 PHDVNAVAAT-CESSVQFWDLRSMGKTNSIEHAH-VRNVDY  216 (346)
Q Consensus       178 ~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~  216 (346)
                      |+++.++++. .++.|.++|..+++....+..+. ...++|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence            5677777766 47899999998887777666444 444444

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=91.84  E-value=3.5  Score=29.43  Aligned_cols=107  Identities=8%  Similarity=0.086  Sum_probs=65.7

Q ss_pred             EEeCCCCCcEEEEecCCeEEEEEccCCC--------ccceeeccc-eeEEEeCCC----CCcEEEEecCCCeEEEEEccc
Q 019059          174 GAWDPHDVNAVAATCESSVQFWDLRSMG--------KTNSIEHAH-VRNVDYDTK----KKHLLVTAADESGIHLWDLRM  240 (346)
Q Consensus       174 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~--------~~~~~~~~~-v~~~~~~~~----~~~~l~~~~~dg~i~i~d~~~  240 (346)
                      -.|....+.|++++.-++|.|++.....        .+..+...+ |++++-.+-    +...|+.|+. ..+-.||+.+
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~   82 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVEN   82 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEccc
Confidence            3566667789999999999999876432        334444344 777755432    2236777765 5888999987


Q ss_pred             CCcceeeecCCCcceEEEEeCCC---CCcEEEEecCCCeEEEEecCC
Q 019059          241 LKAPIQELPGHTHWTWAVCCNPE---YDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       241 ~~~~~~~~~~~~~~v~~v~~~~~---~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      ... +. ++.-...|+++.+-.-   ...++++| .+..|.=||..-
T Consensus        83 N~d-~F-yke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G  126 (136)
T PF14781_consen   83 NSD-LF-YKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEG  126 (136)
T ss_pred             Cch-hh-hhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCC
Confidence            442 22 2334567777766322   21444444 467787777764

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=91.83  E-value=0.27  Score=46.03  Aligned_cols=135  Identities=10%  Similarity=0.062  Sum_probs=76.0

Q ss_pred             ecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCC-CCCcEEEEecCCeEEEEEcc--CCCcccee----ec--cc
Q 019059          140 IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDP-HDVNAVAATCESSVQFWDLR--SMGKTNSI----EH--AH  210 (346)
Q Consensus       140 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~--~~~~~~~~----~~--~~  210 (346)
                      +..+.+++-+..+.-.. ....+   +....+-.++|.. +...+.  -.=|.+.+||+.  .|+....+    ..  +.
T Consensus       108 ~~~~~vrvaN~~~sm~~-~~l~k---gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs  181 (1283)
T KOG1916|consen  108 GMENGVRVANQEPSMRH-NELAK---GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGS  181 (1283)
T ss_pred             chhhhhhhccCcchhHH-HHHHh---cCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCC
Confidence            34567777666543211 11222   2333666666632 112222  123678889876  33322111    11  11


Q ss_pred             -eeEEEeCC---CCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEE-----------eCCCCCcEEEEecCCC
Q 019059          211 -VRNVDYDT---KKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVC-----------CNPEYDGFILSAGTDS  275 (346)
Q Consensus       211 -v~~~~~~~---~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~-----------~~~~~~~~l~s~~~d~  275 (346)
                       +.-|.|.|   +.. .+..+..++.+++......  ....+.+|..++..++           .+||| ..|+++..||
T Consensus       182 ~~~~V~wcp~~~~~~-~ic~~~~~~~i~lL~~~ra--~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDG-tv~a~a~~dG  257 (1283)
T KOG1916|consen  182 DPQLVSWCPIAVNKV-YICYGLKGGEIRLLNINRA--LRSLFRSHSQRVTDMAFFAEGVLKLASLSPDG-TVFAWAISDG  257 (1283)
T ss_pred             Ccceeeecccccccc-eeeeccCCCceeEeeechH--HHHHHHhcCCCcccHHHHhhchhhheeeCCCC-cEEEEeecCC
Confidence             55556654   333 5666777888888776542  2344556776655433           58999 9999999999


Q ss_pred             eEEEEecCC
Q 019059          276 TVNLWLVST  284 (346)
Q Consensus       276 ~i~iwd~~~  284 (346)
                      .++.|.+.-
T Consensus       258 ~v~f~Qiyi  266 (1283)
T KOG1916|consen  258 SVGFYQIYI  266 (1283)
T ss_pred             ccceeeeee
Confidence            988887764

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=91.62  E-value=0.69  Score=24.79  Aligned_cols=28  Identities=18%  Similarity=0.265  Sum_probs=20.4

Q ss_pred             ceeeEEEeCCCCCcEEEEeecC--CeEEEe
Q 019059          315 DSVYGLAWSSREPWIFASLSYD--GRVRNH  342 (346)
Q Consensus       315 ~~v~~~~~~~~~~~~l~s~~~d--~~v~vw  342 (346)
                      ..-....|+|||+.++.+...+  |...||
T Consensus         9 ~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    9 GDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             ccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            3467789999999777777777  777666

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=91.54  E-value=8.4  Score=33.25  Aligned_cols=126  Identities=11%  Similarity=0.128  Sum_probs=71.5

Q ss_pred             CceEEEEee--c-CCCCcEEEEecCCeEEEEEcCCCCC-C--ceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEE
Q 019059          121 GKINCVLWW--S-SGRHDKLVSIDEENIFLWSLDCSNK-N--AQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQF  194 (346)
Q Consensus       121 ~~i~~~~~~--~-~~~~~~~~~~~d~~i~vwd~~~~~~-~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  194 (346)
                      ..++.+|+-  + +|...+++...+|.+.-|.+..... .  .++.....  ....+.+++.......|+.+-.+.-|.-
T Consensus       156 ~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~--~~sQ~EGCVVDDe~g~LYvgEE~~GIW~  233 (381)
T PF02333_consen  156 SEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK--VGSQPEGCVVDDETGRLYVGEEDVGIWR  233 (381)
T ss_dssp             SSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE---SS-EEEEEEETTTTEEEEEETTTEEEE
T ss_pred             ccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec--CCCcceEEEEecccCCEEEecCccEEEE
Confidence            346777774  3 3554455567889999888863221 1  11111111  1227888888887788999988888888


Q ss_pred             EEccCCC--cccee---eccc----eeEEEeC--CCCC-cEEEEecCCCeEEEEEcccCCcceeee
Q 019059          195 WDLRSMG--KTNSI---EHAH----VRNVDYD--TKKK-HLLVTAADESGIHLWDLRMLKAPIQEL  248 (346)
Q Consensus       195 ~d~~~~~--~~~~~---~~~~----v~~~~~~--~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~  248 (346)
                      |+.+...  ....+   ...+    +..|+.-  +++. +++++.-.+++..+|+.+.....+..|
T Consensus       234 y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f  299 (381)
T PF02333_consen  234 YDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSF  299 (381)
T ss_dssp             EESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEE
T ss_pred             EecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceE
Confidence            8876322  11111   1122    7777764  3433 566666677899999977544334444

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=91.52  E-value=2.4  Score=36.88  Aligned_cols=153  Identities=15%  Similarity=0.065  Sum_probs=87.8

Q ss_pred             ceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCcc----ceeecc---c-ee-EEEeCCCCCcEEEEecCCCeEEEE-E
Q 019059          168 LHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKT----NSIEHA---H-VR-NVDYDTKKKHLLVTAADESGIHLW-D  237 (346)
Q Consensus       168 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~----~~~~~~---~-v~-~~~~~~~~~~~l~~~~~dg~i~i~-d  237 (346)
                      ...+..+-..||++.++.-+. ..+.++++.+....    ....++   | |+ .+..-..+. -+.+++.||-|.-| |
T Consensus       220 ~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~-SLLv~~~dG~vsQWFd  297 (733)
T COG4590         220 FSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGF-SLLVVHEDGLVSQWFD  297 (733)
T ss_pred             ccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCce-eEEEEcCCCceeeeee
Confidence            346777888999999888765 67888888754321    111122   1 33 222223343 67788899988776 6


Q ss_pred             cccCCcce----eeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccc
Q 019059          238 LRMLKAPI----QELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDY  313 (346)
Q Consensus       238 ~~~~~~~~----~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (346)
                      .+....+.    +.++-...++..+.-..+. +-+++-...|++.++....                   .+.+..-.. 
T Consensus       298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~r-kgF~~l~~~G~L~~f~st~-------------------~~~lL~~~~-  356 (733)
T COG4590         298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNR-KGFYSLYRNGTLQSFYSTS-------------------EKLLLFERA-  356 (733)
T ss_pred             eecCCCCcceeeeccccCcccceeecccccc-ceEEEEcCCCceeeeeccc-------------------Ccceehhhh-
Confidence            66543321    2222222333333222222 6678888888888876654                   222221111 


Q ss_pred             cceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          314 EDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       314 ~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      -..+.-+++||.+. .+++ -..|.++++.++
T Consensus       357 ~~~~~~~~~Sp~~~-~Ll~-e~~gki~~~~l~  386 (733)
T COG4590         357 YQAPQLVAMSPNQA-YLLS-EDQGKIRLAQLE  386 (733)
T ss_pred             hcCcceeeeCcccc-hhee-ecCCceEEEEec
Confidence            22356689999887 4443 345778888775

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=91.49  E-value=1.6  Score=33.11  Aligned_cols=31  Identities=6%  Similarity=0.066  Sum_probs=26.1

Q ss_pred             ceEEEEeCCCC-----CcEEEEecCCCeEEEEecCC
Q 019059          254 WTWAVCCNPEY-----DGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       254 ~v~~v~~~~~~-----~~~l~s~~~d~~i~iwd~~~  284 (346)
                      .+..++|||.|     .-+|++.+.++.|.||....
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            68899999965     35889999999999998764

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=91.47  E-value=6.1  Score=32.86  Aligned_cols=147  Identities=13%  Similarity=0.145  Sum_probs=71.4

Q ss_pred             eEEEEEccCCCccceeeccc--------eeEEEeCCCC-----CcEEEEecCCCeEEEEEcccCCcceeeecC-------
Q 019059          191 SVQFWDLRSMGKTNSIEHAH--------VRNVDYDTKK-----KHLLVTAADESGIHLWDLRMLKAPIQELPG-------  250 (346)
Q Consensus       191 ~i~i~d~~~~~~~~~~~~~~--------v~~~~~~~~~-----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------  250 (346)
                      +|.+||+.+.+.++.+..+.        +..+.+....     .+.+++-...+.|-++|+.+.+ ..+.+..       
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~-s~Rv~~~~~~~~p~  113 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGK-SWRVLHNSFSPDPD  113 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTE-EEEEETCGCTTS-S
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCc-EEEEecCCcceecc
Confidence            57777877777665554221        7777776532     2345555566789999998732 2222211       


Q ss_pred             ------------CCcceEEEEeCC---CCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccc
Q 019059          251 ------------HTHWTWAVCCNP---EYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYED  315 (346)
Q Consensus       251 ------------~~~~v~~v~~~~---~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (346)
                                  ....+..++.+|   ++ +.|+-....+ -++|.+.+............     .....+..+.....
T Consensus       114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~-r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~-----~~~~~v~~lG~k~~  186 (287)
T PF03022_consen  114 AGPFTIGGESFQWPDGIFGIALSPISPDG-RWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQ-----ALASQVQDLGDKGS  186 (287)
T ss_dssp             SEEEEETTEEEEETTSEEEEEE-TTSTTS--EEEEEETT--SEEEEEEHHHHCSTT--HHH------HHHT-EEEEE---
T ss_pred             ccceeccCceEecCCCccccccCCCCCCc-cEEEEEeCCC-CcEEEEEHHHhhCccccccc-----cccccceeccccCC
Confidence                        112244555544   44 4444433222 23343332100000000000     00111222211123


Q ss_pred             eeeEEEeCCCCCcEEEEeecCCeEEEeeecC
Q 019059          316 SVYGLAWSSREPWIFASLSYDGRVRNHMLEK  346 (346)
Q Consensus       316 ~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~~  346 (346)
                      ....++.+++|. ++.+--..+.|..|+.++
T Consensus       187 ~s~g~~~D~~G~-ly~~~~~~~aI~~w~~~~  216 (287)
T PF03022_consen  187 QSDGMAIDPNGN-LYFTDVEQNAIGCWDPDG  216 (287)
T ss_dssp             SECEEEEETTTE-EEEEECCCTEEEEEETTT
T ss_pred             CCceEEECCCCc-EEEecCCCCeEEEEeCCC
Confidence            456788888886 788888888999998653

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=91.18  E-value=13  Score=34.55  Aligned_cols=141  Identities=12%  Similarity=-0.044  Sum_probs=70.9

Q ss_pred             cEEEEecCC-----eEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecC------CeEEEEEccCCCcc
Q 019059          135 DKLVSIDEE-----NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE------SSVQFWDLRSMGKT  203 (346)
Q Consensus       135 ~~~~~~~d~-----~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~  203 (346)
                      ++++||.||     ++..||..+.+-  .....-.. .......+.+  ++...++||.+      .++..||..+.+-.
T Consensus       383 iYavGG~dg~~~l~svE~YDp~~~~W--~~va~m~~-~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~  457 (571)
T KOG4441|consen  383 LYAVGGFDGEKSLNSVECYDPVTNKW--TPVAPMLT-RRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWT  457 (571)
T ss_pred             EEEEeccccccccccEEEecCCCCcc--cccCCCCc-ceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCcee
Confidence            566776664     477788776542  22111111 1112222223  46666777643      45788998877632


Q ss_pred             --ceeeccc-eeEEEeCCCCCcEEEEecCCC-----eEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCC
Q 019059          204 --NSIEHAH-VRNVDYDTKKKHLLVTAADES-----GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDS  275 (346)
Q Consensus       204 --~~~~~~~-v~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~  275 (346)
                        ..+.... -..++.- ++. +++.|+.|+     +|..||.++..  ...+..-..+...+.....+..+.++|+.|+
T Consensus       458 ~~~~M~~~R~~~g~a~~-~~~-iYvvGG~~~~~~~~~VE~ydp~~~~--W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~  533 (571)
T KOG4441|consen  458 LIAPMNTRRSGFGVAVL-NGK-IYVVGGFDGTSALSSVERYDPETNQ--WTMVAPMTSPRSAVGVVVLGGKLYAVGGFDG  533 (571)
T ss_pred             ecCCcccccccceEEEE-CCE-EEEECCccCCCccceEEEEcCCCCc--eeEcccCccccccccEEEECCEEEEEecccC
Confidence              2222222 2223332 343 888888776     37778877522  2222222222222222222227778888776


Q ss_pred             -----eEEEEecCC
Q 019059          276 -----TVNLWLVST  284 (346)
Q Consensus       276 -----~i~iwd~~~  284 (346)
                           +|..||..+
T Consensus       534 ~~~l~~ve~ydp~~  547 (571)
T KOG4441|consen  534 NNNLNTVECYDPET  547 (571)
T ss_pred             ccccceeEEcCCCC
Confidence                 466666654

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=91.18  E-value=8.6  Score=32.69  Aligned_cols=214  Identities=13%  Similarity=0.128  Sum_probs=107.0

Q ss_pred             CCceEEEEeecCCCCcEEEEecCCe------EEEEEcCCCC-CCceeeec------ccCCC-----ceeeEEEEeCCCCC
Q 019059          120 VGKINCVLWWSSGRHDKLVSIDEEN------IFLWSLDCSN-KNAQVQSK------QSSGM-----LHYLSGGAWDPHDV  181 (346)
Q Consensus       120 ~~~i~~~~~~~~~~~~~~~~~~d~~------i~vwd~~~~~-~~~~~~~~------~~~~~-----~~~v~~~~~~~~~~  181 (346)
                      -+.+..+.+.+++.. +++-++++.      +..+++.... ....+...      ...+.     .....++++.+++.
T Consensus        19 ~GGlSgl~~~~~~~~-~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~   97 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGR-FYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS   97 (326)
T ss_pred             cCcEeeEEEeCCCCE-EEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence            356788889865443 555566666      6666655311 11111100      00110     11455788866666


Q ss_pred             cEEEEecC------CeEEEEEccCCCccceee--c-------------cc--eeEEEeCCCCCcEEEEecC-----CC--
Q 019059          182 NAVAATCE------SSVQFWDLRSMGKTNSIE--H-------------AH--VRNVDYDTKKKHLLVTAAD-----ES--  231 (346)
Q Consensus       182 ~l~~~~~d------~~i~i~d~~~~~~~~~~~--~-------------~~--v~~~~~~~~~~~~l~~~~~-----dg--  231 (346)
                      .+++.-.+      ..|+.++.. ++....+.  .             ..  ..+|+++|+|. .|+++.+     |+  
T Consensus        98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~-~l~~~~E~~l~~d~~~  175 (326)
T PF13449_consen   98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGR-TLFAAMESPLKQDGPR  175 (326)
T ss_pred             EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCC-EEEEEECccccCCCcc
Confidence            66665556      788888876 54433221  0             11  88999999998 4444332     22  


Q ss_pred             e-------EEEE--EcccCCcceeee----cC-----CCcceEEEEeCCCCCcEEEEec-----CCCeEEEEecCCCCCC
Q 019059          232 G-------IHLW--DLRMLKAPIQEL----PG-----HTHWTWAVCCNPEYDGFILSAG-----TDSTVNLWLVSTSNHD  288 (346)
Q Consensus       232 ~-------i~i~--d~~~~~~~~~~~----~~-----~~~~v~~v~~~~~~~~~l~s~~-----~d~~i~iwd~~~~~~~  288 (346)
                      .       ++++  |..+...+...+    ..     ....+..+.+-+++ .+|+.=-     ....++|+.+......
T Consensus       176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~-~lLvLER~~~~~~~~~~ri~~v~l~~at  254 (326)
T PF13449_consen  176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDG-RLLVLERDFSPGTGNYKRIYRVDLSDAT  254 (326)
T ss_pred             cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCC-cEEEEEccCCCCccceEEEEEEEccccc
Confidence            1       4554  443312222222    21     34678888899998 6554321     2346667655542111


Q ss_pred             CCCc--ccccCCcccccccccccccc---ccceeeEEEeCC--CCCcEEEEeecCC
Q 019059          289 ELPS--ESLVESPNQRANSLLNSYSD---YEDSVYGLAWSS--REPWIFASLSYDG  337 (346)
Q Consensus       289 ~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~--~~~~~l~s~~~d~  337 (346)
                      ....  ............+.+..+..   ....+-.|+|-|  ++...|+..+.|.
T Consensus       255 ~~~~~~~l~~~~~~~~~k~ll~d~~~~g~~~dn~EGma~~p~~~g~~~l~lvsDnN  310 (326)
T PF13449_consen  255 DVPGIESLEGADIKPVKKELLFDLSPLGLPIDNFEGMAVGPRLDGRRTLYLVSDNN  310 (326)
T ss_pred             ccccccccccccccccccccccccccccCccCceeeEEEeeccCCCEEEEEEECCC
Confidence            1100  00000001111222222221   144588899976  6666677777654

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=91.08  E-value=12  Score=34.25  Aligned_cols=51  Identities=16%  Similarity=-0.001  Sum_probs=34.6

Q ss_pred             eEEEEEccCCCccceeeccc-----------eeEEEeCCCCC--cEEEEecCCCeEEEEEcccC
Q 019059          191 SVQFWDLRSMGKTNSIEHAH-----------VRNVDYDTKKK--HLLVTAADESGIHLWDLRML  241 (346)
Q Consensus       191 ~i~i~d~~~~~~~~~~~~~~-----------v~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~  241 (346)
                      .|.-.|+++++..-.++.-+           ..-+....+|+  .+++.+..+|.+++.|.++.
T Consensus       272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG  335 (527)
T TIGR03075       272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNG  335 (527)
T ss_pred             eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCC
Confidence            57778999998776665322           11222223553  37888999999999998873

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=91.04  E-value=4.3  Score=28.98  Aligned_cols=69  Identities=12%  Similarity=0.059  Sum_probs=45.1

Q ss_pred             EEEeCCCCCcEEEEecCCCeEEEEEcccCC-------cceeeecCCCcceEEEEeCC---C-CCcEEEEecCCCeEEEEe
Q 019059          213 NVDYDTKKKHLLVTAADESGIHLWDLRMLK-------APIQELPGHTHWTWAVCCNP---E-YDGFILSAGTDSTVNLWL  281 (346)
Q Consensus       213 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~~v~~v~~~~---~-~~~~l~s~~~d~~i~iwd  281 (346)
                      .-.|....+ .|+++..-|+|.|++.....       ..+..+. -...|++++-.+   + +...|+.|+. ..+..||
T Consensus         3 iGkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYD   79 (136)
T PF14781_consen    3 IGKFDGVHP-CLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYD   79 (136)
T ss_pred             EEEeCCCce-eEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEE
Confidence            345677777 78888888999999876422       1334443 456677775333   2 2356777765 5699999


Q ss_pred             cCC
Q 019059          282 VST  284 (346)
Q Consensus       282 ~~~  284 (346)
                      +..
T Consensus        80 V~~   82 (136)
T PF14781_consen   80 VEN   82 (136)
T ss_pred             ccc
Confidence            987

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=90.96  E-value=5.3  Score=34.99  Aligned_cols=83  Identities=8%  Similarity=-0.022  Sum_probs=51.0

Q ss_pred             eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEE-EEeecCC-----
Q 019059           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINC-VLWWSSG-----  132 (346)
Q Consensus        59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~-----  132 (346)
                      ..+......+.+++.+|.++ +++++   ++-|.|.++|+.         .+..++.+++-.+.-.. +.....+     
T Consensus       301 ~~l~D~~R~~~~i~~sP~~~-laA~t---DslGRV~LiD~~---------~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~  367 (415)
T PF14655_consen  301 FGLPDSKREGESICLSPSGR-LAAVT---DSLGRVLLIDVA---------RGIVVRMWKGYRDAQCGWIEVPEEGDRDRS  367 (415)
T ss_pred             EeeccCCceEEEEEECCCCC-EEEEE---cCCCcEEEEECC---------CChhhhhhccCccceEEEEEeecccccccc
Confidence            34555567789999999865 44543   677899999998         66677666665443211 1111111     


Q ss_pred             ------------CCcEEEEecCCeEEEEEcCCCC
Q 019059          133 ------------RHDKLVSIDEENIFLWSLDCSN  154 (346)
Q Consensus       133 ------------~~~~~~~~~d~~i~vwd~~~~~  154 (346)
                                  ..+++-.-..|.|.||.++.+.
T Consensus       368 ~~~~~~~~~~~~l~LvIyaprRg~lEvW~~~~g~  401 (415)
T PF14655_consen  368 NSNSPKSSSRFALFLVIYAPRRGILEVWSMRQGP  401 (415)
T ss_pred             cccccCCCCcceEEEEEEeccCCeEEEEecCCCC
Confidence                        1122223557899999998654

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=90.86  E-value=8.3  Score=31.94  Aligned_cols=207  Identities=14%  Similarity=0.143  Sum_probs=108.9

Q ss_pred             ceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeec-----cCCceEEEEeecCCC--------
Q 019059           67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA-----HVGKINCVLWWSSGR--------  133 (346)
Q Consensus        67 ~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~--------  133 (346)
                      .-+.|+++|.+..-++.    ..-+...+||........  .....+-++..     .....+.+.|+....        
T Consensus        24 N~WGia~~p~~~~WVad----ngT~~~TlYdg~~~~~~g--~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~   97 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVAN----TGTGTATLYVGNPDTQPL--VQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGI   97 (336)
T ss_pred             ccceeEecCCCCEEEec----CCcceEEeecCCcccccC--CccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCc
Confidence            45789999988777663    456789999986211000  01122223321     123566677764322        


Q ss_pred             ---CcEEEEecCCeEEEEEcCCCCC---Cceeee-cccCCCceeeEEEEeC--CCCCcEEEEe-cCCeEEEEEccCCCcc
Q 019059          134 ---HDKLVSIDEENIFLWSLDCSNK---NAQVQS-KQSSGMLHYLSGGAWD--PHDVNAVAAT-CESSVQFWDLRSMGKT  203 (346)
Q Consensus       134 ---~~~~~~~~d~~i~vwd~~~~~~---~~~~~~-~~~~~~~~~v~~~~~~--~~~~~l~~~~-~d~~i~i~d~~~~~~~  203 (346)
                         ..++.+++||+|.-|...-+..   ...+.. ....+.  --..+++.  ..+..|+++. ..++|.++|-.-.+..
T Consensus        98 ~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~ga--vYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~  175 (336)
T TIGR03118        98 TGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGN--VYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPP  175 (336)
T ss_pred             ccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcc--eeeeeEEeecCCCceEEEeccCCCceEEecCcccccc
Confidence               1256667899999998643322   111111 111111  22344444  3345566554 5789999986533211


Q ss_pred             --cee-----eccc----e---------eEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecC--CCcceEEEEeC
Q 019059          204 --NSI-----EHAH----V---------RNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG--HTHWTWAVCCN  261 (346)
Q Consensus       204 --~~~-----~~~~----v---------~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~v~~v~~~  261 (346)
                        ..+     ..+.    |         +-..-.++.. -=+.|..-|.|-+||+.  ...++.+..  .-...+.|+..
T Consensus       176 ~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~-d~v~G~G~G~VdvFd~~--G~l~~r~as~g~LNaPWG~a~A  252 (336)
T TIGR03118       176 LPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRN-DEVAGAGLGYVNVFTLN--GQLLRRVASSGRLNAPWGLAIA  252 (336)
T ss_pred             CCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCccc-ccccCCCcceEEEEcCC--CcEEEEeccCCcccCCceeeeC
Confidence              011     1111    1         1112222222 12233445789999987  556666642  22344566665


Q ss_pred             CCC-----CcEEEEecCCCeEEEEecCC
Q 019059          262 PEY-----DGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       262 ~~~-----~~~l~s~~~d~~i~iwd~~~  284 (346)
                      |-.     ..+|+---.||+|..||..+
T Consensus       253 Pa~FG~~sg~lLVGNFGDG~InaFD~~s  280 (336)
T TIGR03118       253 PESFGSLSGALLVGNFGDGTINAYDPQS  280 (336)
T ss_pred             hhhhCCCCCCeEEeecCCceeEEecCCC
Confidence            521     15666555699999999987

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=90.78  E-value=9.4  Score=33.84  Aligned_cols=31  Identities=13%  Similarity=0.359  Sum_probs=25.0

Q ss_pred             cceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          253 HWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       253 ~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      ..|..++..+.. +.+++.+.++.|.+|++..
T Consensus       190 ~~I~~v~~d~~r-~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  190 PKIVQVAVDPSR-RLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             --EEEEEEETTT-TEEEEEESSE-EEEEEE-S
T ss_pred             hceeeEEecCCc-CEEEEEeCCCcEEEEEEeC
Confidence            348889998888 9999999999999999975

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PHA02790 Kelch-like protein; Provisional

Probab=90.58  E-value=10  Score=34.29  Aligned_cols=59  Identities=10%  Similarity=0.018  Sum_probs=31.3

Q ss_pred             CCCcEEEEecC--CeEEEEEccCCCcc--ceeeccc--eeEEEeCCCCCcEEEEecCCC---eEEEEEccc
Q 019059          179 HDVNAVAATCE--SSVQFWDLRSMGKT--NSIEHAH--VRNVDYDTKKKHLLVTAADES---GIHLWDLRM  240 (346)
Q Consensus       179 ~~~~l~~~~~d--~~i~i~d~~~~~~~--~~~~~~~--v~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~  240 (346)
                      ++...++||.+  ..+..||..+.+-.  ..+....  ...++.  ++. +.+.|+.++   .+..||.++
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~--~g~-IYviGG~~~~~~~ve~ydp~~  385 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI--NNV-IYVIGGHSETDTTTEYLLPNH  385 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEE--CCE-EEEecCcCCCCccEEEEeCCC
Confidence            45555666643  46788887655321  2222111  222222  454 777777553   467788764

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=89.29  E-value=11  Score=31.17  Aligned_cols=200  Identities=10%  Similarity=0.081  Sum_probs=107.0

Q ss_pred             ceEEEEeecCCCCcEEEEecCCeEEEEEcCCC-----CCCceeeecccCC--CceeeEEEEeCCCCC------------c
Q 019059          122 KINCVLWWSSGRHDKLVSIDEENIFLWSLDCS-----NKNAQVQSKQSSG--MLHYLSGGAWDPHDV------------N  182 (346)
Q Consensus       122 ~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~-----~~~~~~~~~~~~~--~~~~v~~~~~~~~~~------------~  182 (346)
                      .-+.|+++|.+. +.++....+...+||....     .+..........+  .....+.+.|+....            .
T Consensus        24 N~WGia~~p~~~-~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~  102 (336)
T TIGR03118        24 NAWGLSYRPGGP-FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR  102 (336)
T ss_pred             ccceeEecCCCC-EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence            357899999887 4566556789999998721     1111222111011  123567777764332            2


Q ss_pred             EEEEecCCeEEEEEccCCCc-----cceeec---cc-eeEEEeCC--CCCcEEEEecCCCeEEEEEcccCCcceeeecCC
Q 019059          183 AVAATCESSVQFWDLRSMGK-----TNSIEH---AH-VRNVDYDT--KKKHLLVTAADESGIHLWDLRMLKAPIQELPGH  251 (346)
Q Consensus       183 l~~~~~d~~i~i~d~~~~~~-----~~~~~~---~~-v~~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  251 (346)
                      ++.+++||+|.-|...-...     ...+..   +. -..+++..  .+.++.++--..++|.+||-.- . ++..-...
T Consensus       103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f-~-~~~~~g~F  180 (336)
T TIGR03118       103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSF-R-PPPLPGSF  180 (336)
T ss_pred             EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcc-c-cccCCCCc
Confidence            56777899999998543322     112221   11 44555543  3554666666789999998552 2 11110001


Q ss_pred             CcceEEEEeCCCC-----CcEE-------------EEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccccc-
Q 019059          252 THWTWAVCCNPEY-----DGFI-------------LSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD-  312 (346)
Q Consensus       252 ~~~v~~v~~~~~~-----~~~l-------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  312 (346)
                      ..+-.-..|.|-+     .+++             +.|..-|.|-+||+.                    +.+++.+.. 
T Consensus       181 ~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~--------------------G~l~~r~as~  240 (336)
T TIGR03118       181 IDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN--------------------GQLLRRVASS  240 (336)
T ss_pred             cCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC--------------------CcEEEEeccC
Confidence            1110001122211     0122             223334678888877                    466665532 


Q ss_pred             -ccceeeEEEeCC------CCCcEEEEeecCCeEEEeeec
Q 019059          313 -YEDSVYGLAWSS------REPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       313 -~~~~v~~~~~~~------~~~~~l~s~~~d~~v~vw~~~  345 (346)
                       .-...+.|+..|      .+. +|+.--.||+|..||..
T Consensus       241 g~LNaPWG~a~APa~FG~~sg~-lLVGNFGDG~InaFD~~  279 (336)
T TIGR03118       241 GRLNAPWGLAIAPESFGSLSGA-LLVGNFGDGTINAYDPQ  279 (336)
T ss_pred             CcccCCceeeeChhhhCCCCCC-eEEeecCCceeEEecCC
Confidence             223456777755      454 77777779999999864

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=88.83  E-value=23  Score=34.14  Aligned_cols=84  Identities=12%  Similarity=0.032  Sum_probs=48.3

Q ss_pred             cceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcc--ccccccccccccccceeeEEEeCCCCCcEE
Q 019059          253 HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPN--QRANSLLNSYSDYEDSVYGLAWSSREPWIF  330 (346)
Q Consensus       253 ~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  330 (346)
                      ..|.++.....+ .+++..-.||+|.++|..+.+..... ......+.  ......-+.+.. -.++..++|||.+. .+
T Consensus       260 ~~V~si~~~~~~-~~v~~~~~DGsI~~~dr~t~~~~~~~-~~~~~~~~~v~s~~~~Gf~fp~-~~~~~~vafSPt~c-~~  335 (753)
T PF11635_consen  260 KRVVSITSPELD-IVVAFAFSDGSIEFRDRNTMKELNET-RTNGEPPNTVTSLFQAGFHFPC-IQPPLHVAFSPTMC-SL  335 (753)
T ss_pred             CeEEEEEecccC-cEEEEEEcCCeEEEEecCcchhhccc-ccccCCcccccccccccccccc-CCCCceEEECcccc-eE
Confidence            346667666666 78899999999999999874322211 00000000  000011111211 11456799999987 77


Q ss_pred             EEeecCCeEE
Q 019059          331 ASLSYDGRVR  340 (346)
Q Consensus       331 ~s~~~d~~v~  340 (346)
                      +....++.+.
T Consensus       336 v~~~~~~~~~  345 (753)
T PF11635_consen  336 VQIDEDGKTK  345 (753)
T ss_pred             EEEecCCCce
Confidence            8888888754

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=88.70  E-value=0.37  Score=45.15  Aligned_cols=132  Identities=15%  Similarity=0.158  Sum_probs=75.3

Q ss_pred             CCeEEEEEccCCCccceeec---cceeEEEeCCCCCcEEEEecCCCeEEEEEcccCC-c-----ceeeecCCCcceEEEE
Q 019059          189 ESSVQFWDLRSMGKTNSIEH---AHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLK-A-----PIQELPGHTHWTWAVC  259 (346)
Q Consensus       189 d~~i~i~d~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~-----~~~~~~~~~~~v~~v~  259 (346)
                      .+.+++-+....-.-..+..   +.+-.+.|.......+.  ..-|.+.+||+.... .     .++........+.-|.
T Consensus       110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~  187 (1283)
T KOG1916|consen  110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS  187 (1283)
T ss_pred             hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence            45566666543322112221   22666666432211122  233667788876321 1     1222222334445566


Q ss_pred             eCC---CCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEE-----------eCCC
Q 019059          260 CNP---EYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLA-----------WSSR  325 (346)
Q Consensus       260 ~~~---~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----------~~~~  325 (346)
                      |.|   .. -++..+-.++.|++...++                    .....+.+|+.++.+++           .+||
T Consensus       188 wcp~~~~~-~~ic~~~~~~~i~lL~~~r--------------------a~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpD  246 (1283)
T KOG1916|consen  188 WCPIAVNK-VYICYGLKGGEIRLLNINR--------------------ALRSLFRSHSQRVTDMAFFAEGVLKLASLSPD  246 (1283)
T ss_pred             eccccccc-ceeeeccCCCceeEeeech--------------------HHHHHHHhcCCCcccHHHHhhchhhheeeCCC
Confidence            665   44 6777777888888877775                    22344556777666654           5789


Q ss_pred             CCcEEEEeecCCeEEEeee
Q 019059          326 EPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       326 ~~~~l~s~~~d~~v~vw~~  344 (346)
                      |. .++....||.++.|.+
T Consensus       247 Gt-v~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  247 GT-VFAWAISDGSVGFYQI  264 (1283)
T ss_pred             Cc-EEEEeecCCccceeee
Confidence            97 8899999999999875

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=88.35  E-value=16  Score=31.64  Aligned_cols=191  Identities=10%  Similarity=0.086  Sum_probs=100.9

Q ss_pred             cEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCc--EEEEec-C---CeEEEEEccCCC-ccceee
Q 019059          135 DKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVN--AVAATC-E---SSVQFWDLRSMG-KTNSIE  207 (346)
Q Consensus       135 ~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~-d---~~i~i~d~~~~~-~~~~~~  207 (346)
                      +++.+..++-+.+||+... ....+.... .....-...+.+.  ++.  |++++. +   ..|++|.+.... .+..+.
T Consensus        70 lIigTdK~~GL~VYdL~Gk-~lq~~~~Gr-~NNVDvrygf~l~--g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~  145 (381)
T PF02333_consen   70 LIIGTDKKGGLYVYDLDGK-ELQSLPVGR-PNNVDVRYGFPLN--GKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVT  145 (381)
T ss_dssp             EEEEEETTTEEEEEETTS--EEEEE-SS--EEEEEEEEEEEET--TEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-C
T ss_pred             eEEEEeCCCCEEEEcCCCc-EEEeecCCC-cceeeeecceecC--CceEEEEEEecCcCCCCeEEEEEecCCCCcceEcC
Confidence            5666677889999999743 222221111 0001122333442  333  455553 2   479999776321 122221


Q ss_pred             -------ccc--eeEEEe--CC-CCCcEEEEecCCCeEEEEEcccCC------cceeeecCCCcceEEEEeCCCCCcEEE
Q 019059          208 -------HAH--VRNVDY--DT-KKKHLLVTAADESGIHLWDLRMLK------APIQELPGHTHWTWAVCCNPEYDGFIL  269 (346)
Q Consensus       208 -------~~~--v~~~~~--~~-~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~~v~~v~~~~~~~~~l~  269 (346)
                             ...  +..+++  +| ++...++....+|.+..|-+....      .+++.|.. ...+..+...... ..|+
T Consensus       146 ~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~-g~LY  223 (381)
T PF02333_consen  146 DPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDET-GRLY  223 (381)
T ss_dssp             BTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTT-TEEE
T ss_pred             CCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEeccc-CCEE
Confidence                   111  666666  33 456566677888998888775322      24666664 4567888888777 7899


Q ss_pred             EecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccccc--ccceeeEEEeC--CCCC-cEEEEeecCCeEEEeee
Q 019059          270 SAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD--YEDSVYGLAWS--SREP-WIFASLSYDGRVRNHML  344 (346)
Q Consensus       270 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~--~~~~-~~l~s~~~d~~v~vw~~  344 (346)
                      .+-+|.-|.-|+.......              .+..+....+  ....|-.|+.-  +++. ++|+|.-.+++..||+.
T Consensus       224 vgEE~~GIW~y~Aep~~~~--------------~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r  289 (381)
T PF02333_consen  224 VGEEDVGIWRYDAEPEGGN--------------DRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDR  289 (381)
T ss_dssp             EEETTTEEEEEESSCCC-S----------------EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEES
T ss_pred             EecCccEEEEEecCCCCCC--------------cceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEec
Confidence            9998877766666531000              1222322222  23346666653  3443 56666667888999986


Q ss_pred             c
Q 019059          345 E  345 (346)
Q Consensus       345 ~  345 (346)
                      +
T Consensus       290 ~  290 (381)
T PF02333_consen  290 E  290 (381)
T ss_dssp             S
T ss_pred             C
Confidence            5

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=88.29  E-value=21  Score=32.83  Aligned_cols=60  Identities=8%  Similarity=-0.141  Sum_probs=36.8

Q ss_pred             eEEEEEcCCCCCCceeeecccCCCc----eeeEEEEeCCCCC---cEEEEecCCeEEEEEccCCCcc
Q 019059          144 NIFLWSLDCSNKNAQVQSKQSSGML----HYLSGGAWDPHDV---NAVAATCESSVQFWDLRSMGKT  203 (346)
Q Consensus       144 ~i~vwd~~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~  203 (346)
                      .|.-.|+++++....++...+....    ....-+....+++   .++.+..+|.+++.|.++++.+
T Consensus       272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            5667788887766655543321111    1112223334555   5667788999999999998864

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG1770 PtrB Protease II [Amino acid transport and metabolism]

Probab=88.15  E-value=22  Score=32.98  Aligned_cols=203  Identities=11%  Similarity=0.095  Sum_probs=110.7

Q ss_pred             ceEEeeecCCCCceEEEE-eecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCC--
Q 019059           67 EIWDLSSCPFDQRIFSTV-FSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEE--  143 (346)
Q Consensus        67 ~v~~~~~~~~~~~l~~~~-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~--  143 (346)
                      .+-.++.|||.+.++-+. ..|....++++-|+.         +++.+-.  .-.+....++|.+|++.++.+...++  
T Consensus       130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~---------tg~~~~d--~i~~~~~~~~Wa~d~~~lfYt~~d~~~r  198 (682)
T COG1770         130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLA---------TGEELPD--EITNTSGSFAWAADGKTLFYTRLDENHR  198 (682)
T ss_pred             eeeeeeeCCCCceEEEEEecccccEEEEEEEecc---------cccccch--hhcccccceEEecCCCeEEEEEEcCCCC
Confidence            566788899998887765 234556779999988         3333221  12334667899999998777775433  


Q ss_pred             --eEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec---CCeEEEEEccCCCccceee--c--cceeEE
Q 019059          144 --NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC---ESSVQFWDLRSMGKTNSIE--H--AHVRNV  214 (346)
Q Consensus       144 --~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~--~--~~v~~~  214 (346)
                        .|....+.+.....++.-... . .....++.-+....+|+....   .+.+++.+.........+.  .  ++-..+
T Consensus       199 p~kv~~h~~gt~~~~d~lvyeE~-d-~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~  276 (682)
T COG1770         199 PDKVWRHRLGTPGSSDELVYEEK-D-DRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVEYSV  276 (682)
T ss_pred             cceEEEEecCCCCCcceEEEEcC-C-CcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcEEee
Confidence              233334444223333222221 1 112333444445666666553   3578888887665432222  1  112222


Q ss_pred             EeCCCCCcEEEEecCCC-eEEEEEccc--CCcceeeecCCCcceEEEEeCCCCCcEEEEecC-CC--eEEEEecCCC
Q 019059          215 DYDTKKKHLLVTAADES-GIHLWDLRM--LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGT-DS--TVNLWLVSTS  285 (346)
Q Consensus       215 ~~~~~~~~~l~~~~~dg-~i~i~d~~~--~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~-d~--~i~iwd~~~~  285 (346)
                      .-.  +..+++-...+| ..+++....  .....+.+..|...+.--.++-.. .+|+..-. ++  .|++++.+++
T Consensus       277 eh~--~d~f~i~sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~-~~lVl~eR~~glp~v~v~~~~~~  350 (682)
T COG1770         277 EHG--GDRFYILSNADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFA-DHLVLLERQEGLPRVVVRDRKTG  350 (682)
T ss_pred             eec--CcEEEEEecCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeec-cEEEEEecccCCceEEEEecCCC
Confidence            222  443555555555 455554332  122344556677777666666666 55555443 33  6888888764

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=88.14  E-value=18  Score=31.93  Aligned_cols=155  Identities=8%  Similarity=0.090  Sum_probs=82.2

Q ss_pred             CcceEEEeecccCCCCeEEEEEecCCCC---eEEEeeeeccccceEEeeecC----CCCceEEEEeecCCcceEEEEecC
Q 019059           27 DHTSFLTGTLSLKEENEVHLLRLSSGGT---ELICEGLFSHPNEIWDLSSCP----FDQRIFSTVFSTGESYGAAIWQIP   99 (346)
Q Consensus        27 ~~~~~~~g~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~h~~~v~~~~~~~----~~~~l~~~~~~~~~d~~i~vw~~~   99 (346)
                      +..++++|+    ..|.++++.=...+.   .+....  .-..+|..+..-+    .....+++.    ....+.||.+.
T Consensus        36 ~~d~IivGS----~~G~LrIy~P~~~~~~~~~lllE~--~l~~PILqv~~G~F~s~~~~~~LaVL----hP~kl~vY~v~  105 (418)
T PF14727_consen   36 GSDKIIVGS----YSGILRIYDPSGNEFQPEDLLLET--QLKDPILQVECGKFVSGSEDLQLAVL----HPRKLSVYSVS  105 (418)
T ss_pred             CccEEEEec----cccEEEEEccCCCCCCCccEEEEE--ecCCcEEEEEeccccCCCCcceEEEe----cCCEEEEEEEE
Confidence            556778874    467777776543221   122121  2336777777643    233344433    67789999985


Q ss_pred             cccCCCCCccceeeeeeecc--CCceEEEEeecC----CCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEE
Q 019059          100 ELYGQLNSPQLERIAALDAH--VGKINCVLWWSS----GRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSG  173 (346)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~----~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~  173 (346)
                      ...+.......-.+..+..|  ......+++-|-    ++..+++-+-||.+.+++-+.-.- ......  .-   -.-.
T Consensus       106 ~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f-~~~lp~--~l---lPgP  179 (418)
T PF14727_consen  106 LVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAF-SRFLPD--FL---LPGP  179 (418)
T ss_pred             ecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEE-EEEcCC--CC---CCcC
Confidence            33222111122222333344  233444444332    244455558899999999763221 111111  11   2234


Q ss_pred             EEeCCCCCcEEEEecCCeEEEEEc
Q 019059          174 GAWDPHDVNAVAATCESSVQFWDL  197 (346)
Q Consensus       174 ~~~~~~~~~l~~~~~d~~i~i~d~  197 (346)
                      +.+.+....+++++.+..|.-|..
T Consensus       180 l~Y~~~tDsfvt~sss~~l~~Yky  203 (418)
T PF14727_consen  180 LCYCPRTDSFVTASSSWTLECYKY  203 (418)
T ss_pred             eEEeecCCEEEEecCceeEEEecH
Confidence            567777778888888888888764

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=87.88  E-value=23  Score=33.04  Aligned_cols=195  Identities=13%  Similarity=0.144  Sum_probs=96.7

Q ss_pred             eecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeec-cCCceEEEEeecC--CCCcEEEE-ecCCeEEE
Q 019059           72 SSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA-HVGKINCVLWWSS--GRHDKLVS-IDEENIFL  147 (346)
Q Consensus        72 ~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~--~~~~~~~~-~~d~~i~v  147 (346)
                      .++|+...+-.+.    +...|.-|-+.        |+.+.+-.+.- .+..|.||.....  +..++++| ...+.-++
T Consensus        34 ~~s~~sn~IdiGI----S~S~ISsYIi~--------PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~l  101 (670)
T PF10395_consen   34 DFSPDSNQIDIGI----SGSAISSYIIK--------PTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKL  101 (670)
T ss_pred             ccCCCCceEEEEe----ccchhhheecC--------CCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEE
Confidence            6777776666543    22345555544        23344444332 2455677765432  23345555 33444444


Q ss_pred             EEcCCC----------CCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCC--ccceeeccc-----
Q 019059          148 WSLDCS----------NKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG--KTNSIEHAH-----  210 (346)
Q Consensus       148 wd~~~~----------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~-----  210 (346)
                      -.+..+          .........   .....+.++.|.++++.+++...+|.|.+||...+.  .+......+     
T Consensus       102 l~i~~~~~~~~~~~~~~e~~~~~~~---kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~  178 (670)
T PF10395_consen  102 LLIERKVGSTEDGTVNSETTNEFEL---KLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVS  178 (670)
T ss_pred             EEEEccCccccccccCccccceEEE---EcccceEEEEEecCCCEEEEEEcCCcEEEEecccccccccccccccccccee
Confidence            444332          000011111   123478999999999999999999999999993322  111222111     


Q ss_pred             ----eeEEEeCCCCCcEEEEecC-C---CeEEEEEcccCCcceeeec---CCCcceEEEEeCCCCCcEEEEecCCCeEEE
Q 019059          211 ----VRNVDYDTKKKHLLVTAAD-E---SGIHLWDLRMLKAPIQELP---GHTHWTWAVCCNPEYDGFILSAGTDSTVNL  279 (346)
Q Consensus       211 ----v~~~~~~~~~~~~l~~~~~-d---g~i~i~d~~~~~~~~~~~~---~~~~~v~~v~~~~~~~~~l~s~~~d~~i~i  279 (346)
                          |.......... ++++-+. +   -..+++.+......+..+.   .+........|+-+. ..|+-- .++.|.+
T Consensus       179 ys~fv~~~~~~~~~~-~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~-G~LY~l-~~~~i~~  255 (670)
T PF10395_consen  179 YSKFVNDFELENGKD-LLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQF-GKLYQL-SKKTISS  255 (670)
T ss_pred             hhhhhcccccccCCc-eEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeC-CEEEEE-eCCEEEE
Confidence                22222212233 3433333 2   2567888733233444443   122222333333332 233333 5778999


Q ss_pred             EecCC
Q 019059          280 WLVST  284 (346)
Q Consensus       280 wd~~~  284 (346)
                      |++..
T Consensus       256 ysip~  260 (670)
T PF10395_consen  256 YSIPN  260 (670)
T ss_pred             EEcCC
Confidence            99876

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=87.77  E-value=4  Score=37.60  Aligned_cols=37  Identities=14%  Similarity=0.188  Sum_probs=27.3

Q ss_pred             eeEEEEeCC----CCCcEEEEecCCeEEEEEccCCCcccee
Q 019059          170 YLSGGAWDP----HDVNAVAATCESSVQFWDLRSMGKTNSI  206 (346)
Q Consensus       170 ~v~~~~~~~----~~~~l~~~~~d~~i~i~d~~~~~~~~~~  206 (346)
                      ....+++++    +..++++.+.|+.||+||+.+++++...
T Consensus       216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred             ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence            345556655    6678889999999999999999985443

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=87.61  E-value=12  Score=30.13  Aligned_cols=131  Identities=11%  Similarity=0.140  Sum_probs=69.3

Q ss_pred             EEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec-C--CeEEEEEccCC--Cc-----cceeeccc-eeE
Q 019059          145 IFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-E--SSVQFWDLRSM--GK-----TNSIEHAH-VRN  213 (346)
Q Consensus       145 i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--~~i~i~d~~~~--~~-----~~~~~~~~-v~~  213 (346)
                      -.+||+.+++.. .+...    ....+.+-.+.+||+.+.+|+. +  ..+++++....  .+     ...+..++ -.+
T Consensus        48 s~~yD~~tn~~r-pl~v~----td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT  122 (243)
T PF07250_consen   48 SVEYDPNTNTFR-PLTVQ----TDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPT  122 (243)
T ss_pred             EEEEecCCCcEE-eccCC----CCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCcccc
Confidence            347888765421 11111    1224556678899999988875 3  46888886541  11     11122233 334


Q ss_pred             EEeCCCCCcEEEEecCCC-eEEEEEcccCCc-ceee--ecC----CCcc-eEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          214 VDYDTKKKHLLVTAADES-GIHLWDLRMLKA-PIQE--LPG----HTHW-TWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       214 ~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~-~~~~--~~~----~~~~-v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      ..--|||+ +++.|+... +..+|..+.... ....  +..    .... =-.+...|+| ++|+.+..+.  .|||...
T Consensus       123 ~~~L~DG~-vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG-~lFi~an~~s--~i~d~~~  198 (243)
T PF07250_consen  123 ATTLPDGR-VLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDG-NLFIFANRGS--IIYDYKT  198 (243)
T ss_pred             ceECCCCC-EEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCC-CEEEEEcCCc--EEEeCCC
Confidence            44457898 666666553 455555432111 1111  110    0011 1245567999 8888888654  4567776

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=87.54  E-value=16  Score=30.66  Aligned_cols=188  Identities=10%  Similarity=0.067  Sum_probs=83.2

Q ss_pred             ceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeec-ccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCC
Q 019059          122 KINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK-QSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSM  200 (346)
Q Consensus       122 ~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  200 (346)
                      ...++.|..+ . .+++ +..+. .+...+.++....+... ..++   ....+....++ ....++..|.|+. ....+
T Consensus        63 ~l~~I~f~~~-~-g~iv-G~~g~-ll~T~DgG~tW~~v~l~~~lpg---s~~~i~~l~~~-~~~l~~~~G~iy~-T~DgG  133 (302)
T PF14870_consen   63 HLNSISFDGN-E-GWIV-GEPGL-LLHTTDGGKTWERVPLSSKLPG---SPFGITALGDG-SAELAGDRGAIYR-TTDGG  133 (302)
T ss_dssp             EEEEEEEETT-E-EEEE-EETTE-EEEESSTTSS-EE----TT-SS----EEEEEEEETT-EEEEEETT--EEE-ESSTT
T ss_pred             eEEEEEecCC-c-eEEE-cCCce-EEEecCCCCCcEEeecCCCCCC---CeeEEEEcCCC-cEEEEcCCCcEEE-eCCCC
Confidence            3567777543 2 3444 44443 33344444433333211 1222   22333333333 3444445555432 22333


Q ss_pred             Cccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeee-cCCCcceEEEEeCCCCCcEEEEecCCCe
Q 019059          201 GKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL-PGHTHWTWAVCCNPEYDGFILSAGTDST  276 (346)
Q Consensus       201 ~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~v~~~~~~~~~l~s~~~d~~  276 (346)
                      +.=..+..+.   +..+..++++. +++++..-....-||.-..  .-... +.....|..+.|.|++ .+.+.+ ..|.
T Consensus       134 ~tW~~~~~~~~gs~~~~~r~~dG~-~vavs~~G~~~~s~~~G~~--~w~~~~r~~~~riq~~gf~~~~-~lw~~~-~Gg~  208 (302)
T PF14870_consen  134 KTWQAVVSETSGSINDITRSSDGR-YVAVSSRGNFYSSWDPGQT--TWQPHNRNSSRRIQSMGFSPDG-NLWMLA-RGGQ  208 (302)
T ss_dssp             SSEEEEE-S----EEEEEE-TTS--EEEEETTSSEEEEE-TT-S--S-EEEE--SSS-EEEEEE-TTS--EEEEE-TTTE
T ss_pred             CCeeEcccCCcceeEeEEECCCCc-EEEEECcccEEEEecCCCc--cceEEccCccceehhceecCCC-CEEEEe-CCcE
Confidence            3222222122   88888999998 7777766555667775431  12221 2245789999999998 655544 7788


Q ss_pred             EEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeE
Q 019059          277 VNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRV  339 (346)
Q Consensus       277 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v  339 (346)
                      |+.=+....        ..      ...+.+.......-.+.+++|.+++. +.++|+ .|.+
T Consensus       209 ~~~s~~~~~--------~~------~w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg-~G~l  255 (302)
T PF14870_consen  209 IQFSDDPDD--------GE------TWSEPIIPIKTNGYGILDLAYRPPNE-IWAVGG-SGTL  255 (302)
T ss_dssp             EEEEE-TTE--------EE------EE---B-TTSS--S-EEEEEESSSS--EEEEES-TT-E
T ss_pred             EEEccCCCC--------cc------ccccccCCcccCceeeEEEEecCCCC-EEEEeC-CccE
Confidence            887762110        00      00111111211222389999999876 666655 4444

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=87.39  E-value=3.1  Score=22.42  Aligned_cols=32  Identities=19%  Similarity=0.267  Sum_probs=21.7

Q ss_pred             CCCCcEEEEecCCCeEEEEEcccCCcceeeecC
Q 019059          218 TKKKHLLVTAADESGIHLWDLRMLKAPIQELPG  250 (346)
Q Consensus       218 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  250 (346)
                      |+++.++++...++.|.++|..+ ...+..+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~-~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTAT-NKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCC-CeEEEEEEC
Confidence            56665666666788999999876 444555443

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=86.89  E-value=2.4  Score=36.87  Aligned_cols=165  Identities=14%  Similarity=0.177  Sum_probs=92.2

Q ss_pred             eeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCC-CceeeE-EEEeCCCCCcEEEEec
Q 019059          111 ERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG-MLHYLS-GGAWDPHDVNAVAATC  188 (346)
Q Consensus       111 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~v~-~~~~~~~~~~l~~~~~  188 (346)
                      +.++.+..-.+.+..+-..|||+.+.+.++  .++.++++.+.....+......++ ....|+ .+..-.-+..++++..
T Consensus       211 e~i~~L~~~~~~v~qllL~Pdg~~LYv~~g--~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~  288 (733)
T COG4590         211 EIIRLLSVPFSDVSQLLLTPDGKTLYVRTG--SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHE  288 (733)
T ss_pred             hhhhhcCCCccchHhhEECCCCCEEEEecC--CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcC
Confidence            333334444566778888999997555554  788888887543222211111111 112232 2222334666888888


Q ss_pred             CCeEEEE-EccCCCccceeeccceeEEEeCC--------C-CCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEE
Q 019059          189 ESSVQFW-DLRSMGKTNSIEHAHVRNVDYDT--------K-KKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAV  258 (346)
Q Consensus       189 d~~i~i~-d~~~~~~~~~~~~~~v~~~~~~~--------~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v  258 (346)
                      ||.|.-| |.+.+.. ..+.  |++...+.|        + .+..+++-+.+|++.++.... .+++ -++.--..+.-+
T Consensus       289 dG~vsQWFdvr~~~~-p~l~--h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~-~~~l-L~~~~~~~~~~~  363 (733)
T COG4590         289 DGLVSQWFDVRRDGQ-PHLN--HIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTS-EKLL-LFERAYQAPQLV  363 (733)
T ss_pred             CCceeeeeeeecCCC-Ccce--eeeccccCcccceeeccccccceEEEEcCCCceeeeeccc-Ccce-ehhhhhcCccee
Confidence            9988776 5553322 1111  122222222        1 222567777788888776554 2222 222223466778


Q ss_pred             EeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          259 CCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       259 ~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      ++||.+ .++++-. .|.++++.+.+
T Consensus       364 ~~Sp~~-~~Ll~e~-~gki~~~~l~N  387 (733)
T COG4590         364 AMSPNQ-AYLLSED-QGKIRLAQLEN  387 (733)
T ss_pred             eeCccc-chheeec-CCceEEEEecC
Confidence            999999 7777654 46799998887

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.64  E-value=31  Score=34.72  Aligned_cols=152  Identities=10%  Similarity=0.075  Sum_probs=80.6

Q ss_pred             CCCCeEEEEEecCCCCeEEEeeeeccccceEEeee--------cCCCCceEEEEeecCCcceEEEEecCcccCCCCCccc
Q 019059           39 KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSS--------CPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQL  110 (346)
Q Consensus        39 ~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--------~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~  110 (346)
                      .-++.+++|++..++......   +-...|..+..        .|.=++++..+    .--.|.++-+............
T Consensus        96 TiDn~L~lWny~~~~e~~~~d---~~shtIl~V~LvkPkpgvFv~~IqhlLvva----T~~ei~ilgV~~~~~~~~~~~f  168 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYD---GLSHTILKVGLVKPKPGVFVPEIQHLLVVA----TPVEIVILGVSFDEFTGELSIF  168 (1311)
T ss_pred             EeCCeEEEEEcCCCCcccccc---chhhhheeeeeecCCCCcchhhhheeEEec----ccceEEEEEEEeccccCccccc
Confidence            357899999999865433322   23334444443        33344555542    3334555544311111000111


Q ss_pred             eeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEE--cCCC---CCCcee-------------eecccCCCceeeE
Q 019059          111 ERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWS--LDCS---NKNAQV-------------QSKQSSGMLHYLS  172 (346)
Q Consensus       111 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd--~~~~---~~~~~~-------------~~~~~~~~~~~v~  172 (346)
                      .....+......|.|+....+|+  ++.+|.||.|+-.-  ...+   +...++             .......+..+|.
T Consensus       169 ~~~~~i~~dg~~V~~I~~t~nGR--IF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~  246 (1311)
T KOG1900|consen  169 NTSFKISVDGVSVNCITYTENGR--IFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIR  246 (1311)
T ss_pred             ccceeeecCCceEEEEEeccCCc--EEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcce
Confidence            11123333356789999888888  55555677554222  1111   000000             0011124456889


Q ss_pred             EEEeCCCCCcEEEEecCCeEEEEEccC
Q 019059          173 GGAWDPHDVNAVAATCESSVQFWDLRS  199 (346)
Q Consensus       173 ~~~~~~~~~~l~~~~~d~~i~i~d~~~  199 (346)
                      .+.....-..+.+-+..++|.+||+..
T Consensus       247 qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  247 QITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             eeEeccccceeeeeccCceEEEEEccC
Confidence            999987667777888899999999986

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=86.31  E-value=23  Score=31.27  Aligned_cols=149  Identities=9%  Similarity=0.113  Sum_probs=86.6

Q ss_pred             cCCCCcEEEEecCCeEEEEEcCCCCCC--ceeeecccCCCceeeEEEE---eCC-CCCcEEEEecCCeEEEEEccCCCcc
Q 019059          130 SSGRHDKLVSIDEENIFLWSLDCSNKN--AQVQSKQSSGMLHYLSGGA---WDP-HDVNAVAATCESSVQFWDLRSMGKT  203 (346)
Q Consensus       130 ~~~~~~~~~~~~d~~i~vwd~~~~~~~--~~~~~~~~~~~~~~v~~~~---~~~-~~~~l~~~~~d~~i~i~d~~~~~~~  203 (346)
                      +++...+++|+..|.++||+.......  ..+.......   +|..+.   |.+ .....++.-.-..+.+|.+......
T Consensus        34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~---PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~  110 (418)
T PF14727_consen   34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKD---PILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGT  110 (418)
T ss_pred             CCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCC---cEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCC
Confidence            445556888999999999998654321  1222222222   565554   423 2334555566778888888422111


Q ss_pred             --------ceeeccc-----eeEEEeCC----CCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCc
Q 019059          204 --------NSIEHAH-----VRNVDYDT----KKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG  266 (346)
Q Consensus       204 --------~~~~~~~-----v~~~~~~~----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~  266 (346)
                              ....-.|     ...+..-|    .++..+.+-+-||.+.+|+-+..  ....+-..---...+.+.+.- .
T Consensus       111 ~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~--~f~~~lp~~llPgPl~Y~~~t-D  187 (418)
T PF14727_consen  111 VEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF--AFSRFLPDFLLPGPLCYCPRT-D  187 (418)
T ss_pred             cccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE--EEEEEcCCCCCCcCeEEeecC-C
Confidence                    1111122     33333333    22347888899999999997642  112222222223446777877 7


Q ss_pred             EEEEecCCCeEEEEecCC
Q 019059          267 FILSAGTDSTVNLWLVST  284 (346)
Q Consensus       267 ~l~s~~~d~~i~iwd~~~  284 (346)
                      .|++++.+..+.-|..+.
T Consensus       188 sfvt~sss~~l~~Yky~~  205 (418)
T PF14727_consen  188 SFVTASSSWTLECYKYQD  205 (418)
T ss_pred             EEEEecCceeEEEecHHH
Confidence            899999898999997654

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=86.10  E-value=25  Score=31.45  Aligned_cols=113  Identities=12%  Similarity=0.008  Sum_probs=59.4

Q ss_pred             cccceEEeeecCCCCceEEEEeecCC-cceEEEEecCcccCCCCCccceeeeee----e-ccCCceEEEEeecCC-----
Q 019059           64 HPNEIWDLSSCPFDQRIFSTVFSTGE-SYGAAIWQIPELYGQLNSPQLERIAAL----D-AHVGKINCVLWWSSG-----  132 (346)
Q Consensus        64 h~~~v~~~~~~~~~~~l~~~~~~~~~-d~~i~vw~~~~~~~~~~~~~~~~~~~~----~-~~~~~i~~~~~~~~~-----  132 (346)
                      .-...+.|+|.|+++.|++-     . .|.|++++-...       ....+..+    . ........|+++|+-     
T Consensus        28 GL~~Pw~maflPDG~llVtE-----R~~G~I~~v~~~~~-------~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~   95 (454)
T TIGR03606        28 GLNKPWALLWGPDNQLWVTE-----RATGKILRVNPETG-------EVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKG   95 (454)
T ss_pred             CCCCceEEEEcCCCeEEEEE-----ecCCEEEEEeCCCC-------ceeeeecCCceeccCCCCceeeEEECCCccccCC
Confidence            34567889999998766663     4 588888875410       11111111    1 135678899999873     


Q ss_pred             -CCcEEEEec---------CCeEEEEEcCCCC----CCceeeecccCCCceeeEEEEeCCCCCcEEEEec
Q 019059          133 -RHDKLVSID---------EENIFLWSLDCSN----KNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC  188 (346)
Q Consensus       133 -~~~~~~~~~---------d~~i~vwd~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  188 (346)
                       .+++++-+.         ...|.-|.+....    ....+.........+.-..++|.||+.+.++.+.
T Consensus        96 n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD  165 (454)
T TIGR03606        96 NPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGE  165 (454)
T ss_pred             CcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECC
Confidence             233443221         2345555554211    1112221111111224567889999986665554

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=85.41  E-value=4.5  Score=37.29  Aligned_cols=32  Identities=16%  Similarity=0.416  Sum_probs=23.5

Q ss_pred             ceEEEEeCC----CCCcEEEEecCCCeEEEEecCCCC
Q 019059          254 WTWAVCCNP----EYDGFILSAGTDSTVNLWLVSTSN  286 (346)
Q Consensus       254 ~v~~v~~~~----~~~~~l~s~~~d~~i~iwd~~~~~  286 (346)
                      .+..+.+++    +. .+|++.+.|+++|+||+.++.
T Consensus       216 ~~~~~~~~~~~~~~~-~~l~tl~~D~~LRiW~l~t~~  251 (547)
T PF11715_consen  216 VAASLAVSSSEINDD-TFLFTLSRDHTLRIWSLETGQ  251 (547)
T ss_dssp             -EEEEEE-----ETT-TEEEEEETTSEEEEEETTTTC
T ss_pred             ccceEEEecceeCCC-CEEEEEeCCCeEEEEECCCCe
Confidence            345566665    44 899999999999999999843

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=84.90  E-value=8.9  Score=25.31  Aligned_cols=47  Identities=13%  Similarity=0.094  Sum_probs=31.3

Q ss_pred             cCCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEE
Q 019059          188 CESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIH  234 (346)
Q Consensus       188 ~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~  234 (346)
                      .+|.+..||..+++....+..-+ .+.|++++++.+++++=..-..|.
T Consensus        35 ~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~Ri~   82 (89)
T PF03088_consen   35 PTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRYRIL   82 (89)
T ss_dssp             --EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTEEE
T ss_pred             CCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCceEE
Confidence            46889999999887554444333 999999999996666554444443

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=84.75  E-value=37  Score=32.33  Aligned_cols=96  Identities=14%  Similarity=0.169  Sum_probs=55.5

Q ss_pred             EEEEeCCCCCcEEEEecCC-----eEEEEEcc---CCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCC
Q 019059          172 SGGAWDPHDVNAVAATCES-----SVQFWDLR---SMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK  242 (346)
Q Consensus       172 ~~~~~~~~~~~l~~~~~d~-----~i~i~d~~---~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  242 (346)
                      ..+.|-|+|..+++.+.||     .+.++..+   .|+.-....... +..++|+-... .++. .....+.+|-..+..
T Consensus       250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~-vlav-~~~n~~~lwttkNyh  327 (1243)
T COG5290         250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLST-VLAV-AEGNLLKLWTTKNYH  327 (1243)
T ss_pred             hccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHH-HHHH-hhcceEEEEEccceE
Confidence            4478999999999887543     45555433   222211122122 77788877665 4443 345689999877533


Q ss_pred             cceeeecCCCcceEEEEeCCCCCcEEEE
Q 019059          243 APIQELPGHTHWTWAVCCNPEYDGFILS  270 (346)
Q Consensus       243 ~~~~~~~~~~~~v~~v~~~~~~~~~l~s  270 (346)
                      -.++ ....-..+.-+.|+|.....|.-
T Consensus       328 WYLK-~e~~ip~~s~vkwhpe~~nTl~f  354 (1243)
T COG5290         328 WYLK-VERQIPGISYVKWHPEEKNTLLF  354 (1243)
T ss_pred             EEEE-EeecCCCcceeeeccccCcEEEE
Confidence            2221 12233456778899876444443

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=84.50  E-value=32  Score=31.39  Aligned_cols=234  Identities=14%  Similarity=0.091  Sum_probs=109.4

Q ss_pred             CCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeecc-ccceEEeeecCCCC-ceEEEEeecCCcceEEEEecCcc
Q 019059           24 ADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSH-PNEIWDLSSCPFDQ-RIFSTVFSTGESYGAAIWQIPEL  101 (346)
Q Consensus        24 ~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~-~l~~~~~~~~~d~~i~vw~~~~~  101 (346)
                      ...+..++++++    ++|.++.+.+..++..+... ..+. .....++.+..++. .++++.  ...|+.+.-|...  
T Consensus       218 ~~~~~~~~lL~~----e~G~l~~l~l~~~~~~i~i~-~~g~~~~~~s~l~~l~~g~d~lf~gs--~~gds~l~~~~~~--  288 (504)
T PF10433_consen  218 YDKDGDRILLQD----EDGDLYLLTLDNDGGSISIT-YLGTLCSIASSLTYLKNGGDYLFVGS--EFGDSQLLQISLS--  288 (504)
T ss_dssp             SSTTSSEEEEEE----TTSEEEEEEEEEEEEEEEEE-EEEE--S-ESEEEEESTT--EEEEEE--SSS-EEEEEEESE--
T ss_pred             ecCCCCEEEEEe----CCCeEEEEEEEECCCeEEEE-EcCCcCChhheEEEEcCCCEEEEEEE--ecCCcEEEEEeCC--
Confidence            344556666653    67889888888765422222 2233 44556677766552 444443  3345666666644  


Q ss_pred             cCCCCCccceeeeeeeccCCceEEEEeecC---CC-------CcEEEE--ecCCeEEEEEcCCCCCCceeeecccCCCce
Q 019059          102 YGQLNSPQLERIAALDAHVGKINCVLWWSS---GR-------HDKLVS--IDEENIFLWSLDCSNKNAQVQSKQSSGMLH  169 (346)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~-------~~~~~~--~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~  169 (346)
                             ..+.+..+ ..-++|..++..+.   +.       .+++++  +.+|.+++..-.-+-...........+ ..
T Consensus       289 -------~l~~~~~~-~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~-v~  359 (504)
T PF10433_consen  289 -------NLEVLDSL-PNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPG-VT  359 (504)
T ss_dssp             -------SEEEEEEE-----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEEST-EE
T ss_pred             -------CcEEEEec-cCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCC-ce
Confidence                   55666666 34578888888532   12       334444  357899887543111100222222222 34


Q ss_pred             eeEEEEeCC-CCCcEEEEecCCeEEEEEcc---CCCcccee-----eccc--eeEEEeCCCCCcEEEEecCCCeEEEEEc
Q 019059          170 YLSGGAWDP-HDVNAVAATCESSVQFWDLR---SMGKTNSI-----EHAH--VRNVDYDTKKKHLLVTAADESGIHLWDL  238 (346)
Q Consensus       170 ~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~---~~~~~~~~-----~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~  238 (346)
                      .++.+.... ++.+++.+..+ .-+++.+.   ..+.+..+     ....  +.+-.+. ++  .++=... ..|++.+.
T Consensus       360 ~iW~l~~~~~~~~~lv~S~~~-~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~-~~--~ivQVt~-~~i~l~~~  434 (504)
T PF10433_consen  360 GIWTLKLSSSDHSYLVLSFPN-ETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG-DG--RIVQVTP-KGIRLIDL  434 (504)
T ss_dssp             EEEEE-SSSSSBSEEEEEESS-EEEEEEES----SSEEEEE---TS-SSS-EEEEEEET-TT--EEEEEES-SEEEEEES
T ss_pred             EEEEeeecCCCceEEEEEcCC-ceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC-CC--eEEEEec-CeEEEEEC
Confidence            566665443 23445555444 44455553   22222111     1111  2222222 22  3333333 45788887


Q ss_pred             ccCCcceeeec-CCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          239 RMLKAPIQELP-GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       239 ~~~~~~~~~~~-~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      .. .+...... .....|.+.+...   .+++.+-.++.+..+.+..
T Consensus       435 ~~-~~~~~~w~~~~~~~I~~a~~~~---~~v~v~~~~~~~~~~~~~~  477 (504)
T PF10433_consen  435 ED-GKLTQEWKPPAGSIIVAASIND---PQVLVALSGGELVYFELDD  477 (504)
T ss_dssp             SS-TSEEEEEE-TTS---SEEEESS---SEEEEEE-TTEEEEEEEET
T ss_pred             CC-CeEEEEEeCCCCCeEEEEEECC---CEEEEEEeCCcEEEEEEEC
Confidence            65 33333332 2344555555544   3455555578888888875

...

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=84.13  E-value=18  Score=28.23  Aligned_cols=99  Identities=8%  Similarity=-0.027  Sum_probs=52.1

Q ss_pred             CcEEEEe--cCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEE-EecCCeEEEEEccCCCccceeeccc
Q 019059          134 HDKLVSI--DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVA-ATCESSVQFWDLRSMGKTNSIEHAH  210 (346)
Q Consensus       134 ~~~~~~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~  210 (346)
                      +++.+++  ....|++||+.+++...........-.-..++.     -+..+.. .=.+|.-..+|.++-+++..+.-..
T Consensus        57 ~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~-----~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~G  131 (262)
T COG3823          57 HILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITK-----LGDYFYQLTWKEGVAFKYDADTLEELGRFSYEG  131 (262)
T ss_pred             EEEEeccccccceeEEEeccCceEEEEeecCCccccccceee-----ccceEEEEEeccceeEEEChHHhhhhcccccCC
Confidence            4455554  367899999997764433322210000011111     1233332 2357888899999888777665222


Q ss_pred             -eeEEEeCCCCCcEEEEecCCCeEEEEEccc
Q 019059          211 -VRNVDYDTKKKHLLVTAADESGIHLWDLRM  240 (346)
Q Consensus       211 -v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  240 (346)
                       =..++.  ++.+ ++.+....+++.-|.++
T Consensus       132 eGWgLt~--d~~~-LimsdGsatL~frdP~t  159 (262)
T COG3823         132 EGWGLTS--DDKN-LIMSDGSATLQFRDPKT  159 (262)
T ss_pred             cceeeec--CCcc-eEeeCCceEEEecCHHH
Confidence             444443  4543 44444445677666654

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=84.11  E-value=18  Score=28.30  Aligned_cols=101  Identities=18%  Similarity=0.289  Sum_probs=59.1

Q ss_pred             CcEEEEecCCeEEEEEccCCC--ccceeeccc-eeEEEeCCCCCcEEEEecCC---C---eEEEE-Eccc---CCccee-
Q 019059          181 VNAVAATCESSVQFWDLRSMG--KTNSIEHAH-VRNVDYDTKKKHLLVTAADE---S---GIHLW-DLRM---LKAPIQ-  246 (346)
Q Consensus       181 ~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~-v~~~~~~~~~~~~l~~~~~d---g---~i~i~-d~~~---~~~~~~-  246 (346)
                      ..|+.+.....|.+|++.+..  ....+..-. |..+.++..|+ ++++--.+   .   .+|+| +.+.   ...++. 
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GD-YlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGD-YLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccc-eEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            556565777889999998433  333444333 99999999999 56653221   1   55665 2221   112222 


Q ss_pred             eecC---------------------CCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          247 ELPG---------------------HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       247 ~~~~---------------------~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      .+.+                     -..++.+++..|.. .-|+.|+ ++.+.||.+..
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~t-G~LlVg~-~~~l~lf~l~~  164 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVT-GNLLVGC-GNKLVLFTLKY  164 (215)
T ss_pred             EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCC-CCEEEEc-CCEEEEEEEEE
Confidence            1112                     12355677777765 3455555 45799998876

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=84.10  E-value=25  Score=29.89  Aligned_cols=101  Identities=14%  Similarity=0.116  Sum_probs=56.9

Q ss_pred             eEEEEeecCCCCcEEEEecC------CeEEEEEcCCCCCCceee-ec---------ccCCCceeeEEEEeCCCCCcEEEE
Q 019059          123 INCVLWWSSGRHDKLVSIDE------ENIFLWSLDCSNKNAQVQ-SK---------QSSGMLHYLSGGAWDPHDVNAVAA  186 (346)
Q Consensus       123 i~~~~~~~~~~~~~~~~~~d------~~i~vwd~~~~~~~~~~~-~~---------~~~~~~~~v~~~~~~~~~~~l~~~  186 (346)
                      .-++++.+++. ++++.-.+      ..|..++.. +.....+. +.         ........+.+++++|+++.|+++
T Consensus        87 ~Egi~~~~~g~-~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~  164 (326)
T PF13449_consen   87 PEGIAVPPDGS-FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA  164 (326)
T ss_pred             hhHeEEecCCC-EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence            34778866776 34444335      677777766 43333321 11         111234578999999999977766


Q ss_pred             ec-----CC--e-------EEE--EEccC-CCccce----eec------cc-eeEEEeCCCCCcEEEE
Q 019059          187 TC-----ES--S-------VQF--WDLRS-MGKTNS----IEH------AH-VRNVDYDTKKKHLLVT  226 (346)
Q Consensus       187 ~~-----d~--~-------i~i--~d~~~-~~~~~~----~~~------~~-v~~~~~~~~~~~~l~~  226 (346)
                      ..     |+  .       +++  ||..+ ++....    +..      .. +..+.+-++++ +++.
T Consensus       165 ~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~-lLvL  231 (326)
T PF13449_consen  165 MESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR-LLVL  231 (326)
T ss_pred             ECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc-EEEE
Confidence            53     22  1       444  55544 222221    121      23 88999999998 5553

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=83.94  E-value=24  Score=29.43  Aligned_cols=174  Identities=10%  Similarity=0.070  Sum_probs=82.5

Q ss_pred             eEEEEEcCCCCCCceeeecccCC-CceeeEEEEeCCCC-----CcEEEEe-cCCeEEEEEccCCCccceeec--------
Q 019059          144 NIFLWSLDCSNKNAQVQSKQSSG-MLHYLSGGAWDPHD-----VNAVAAT-CESSVQFWDLRSMGKTNSIEH--------  208 (346)
Q Consensus       144 ~i~vwd~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~-----~~l~~~~-~d~~i~i~d~~~~~~~~~~~~--------  208 (346)
                      .|.+||+.+++....+....... ....+..+.+....     .+++.+. ..+.|.++|+.+++.-+....        
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~  114 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA  114 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence            45556666655433333322111 23356777775522     2333333 356899999998763322210        


Q ss_pred             ------c------c-eeEEEeCC---CCCcEEEEecCCCeEEEEEc---ccCCc--------ceeeecCCCcceEEEEeC
Q 019059          209 ------A------H-VRNVDYDT---KKKHLLVTAADESGIHLWDL---RMLKA--------PIQELPGHTHWTWAVCCN  261 (346)
Q Consensus       209 ------~------~-v~~~~~~~---~~~~~l~~~~~dg~i~i~d~---~~~~~--------~~~~~~~~~~~v~~v~~~  261 (346)
                            +      . +..++.+|   +++.+....-....++--..   ++...        .++.+-........++.+
T Consensus       115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D  194 (287)
T PF03022_consen  115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAID  194 (287)
T ss_dssp             EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEE
T ss_pred             cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEEC
Confidence                  0      0 55555554   55433433333333322221   11110        112221112355678889


Q ss_pred             CCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCC--CCCcEEEE
Q 019059          262 PEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS--REPWIFAS  332 (346)
Q Consensus       262 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~s  332 (346)
                      ++| .++++--..+.|..|+....-..+             ..+.+..-...-.++.++.+.+  +|. +.+.
T Consensus       195 ~~G-~ly~~~~~~~aI~~w~~~~~~~~~-------------~~~~l~~d~~~l~~pd~~~i~~~~~g~-L~v~  252 (287)
T PF03022_consen  195 PNG-NLYFTDVEQNAIGCWDPDGPYTPE-------------NFEILAQDPRTLQWPDGLKIDPEGDGY-LWVL  252 (287)
T ss_dssp             TTT-EEEEEECCCTEEEEEETTTSB-GC-------------CEEEEEE-CC-GSSEEEEEE-T--TS--EEEE
T ss_pred             CCC-cEEEecCCCCeEEEEeCCCCcCcc-------------chheeEEcCceeeccceeeeccccCce-EEEE
Confidence            999 888888889999999988610000             0122222222234678889988  775 4443

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=83.69  E-value=30  Score=30.41  Aligned_cols=152  Identities=10%  Similarity=-0.019  Sum_probs=0.0

Q ss_pred             CCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccC
Q 019059          120 VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRS  199 (346)
Q Consensus       120 ~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~  199 (346)
                      .+....+..++++.  +++.+..|.+..=.-...............    .+..+.|.+++..++++...+.+.--|-..
T Consensus       238 ~Gsf~~v~~~~dG~--~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~----~l~~v~~~~dg~l~l~g~~G~l~~S~d~G~  311 (398)
T PLN00033        238 TGTFSTVNRSPDGD--YVAVSSRGNFYLTWEPGQPYWQPHNRASAR----RIQNMGWRADGGLWLLTRGGGLYVSKGTGL  311 (398)
T ss_pred             ccceeeEEEcCCCC--EEEEECCccEEEecCCCCcceEEecCCCcc----ceeeeeEcCCCCEEEEeCCceEEEecCCCC


Q ss_pred             CCccceeeccc-------eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEec
Q 019059          200 MGKTNSIEHAH-------VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG  272 (346)
Q Consensus       200 ~~~~~~~~~~~-------v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~  272 (346)
                      ......+....       +.++.|.+++. ++++|..--.++--|--+.-+....-..-....+.+.|.+++ +.+++|.
T Consensus       312 ~~~~~~f~~~~~~~~~~~l~~v~~~~d~~-~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~-~g~~~G~  389 (398)
T PLN00033        312 TEEDFDFEEADIKSRGFGILDVGYRSKKE-AWAAGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDK-KGFVLGN  389 (398)
T ss_pred             cccccceeecccCCCCcceEEEEEcCCCc-EEEEECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCC-ceEEEeC


Q ss_pred             CCCeEEEE
Q 019059          273 TDSTVNLW  280 (346)
Q Consensus       273 ~d~~i~iw  280 (346)
                       +|.|.-|
T Consensus       390 -~G~il~~  396 (398)
T PLN00033        390 -DGVLLRY  396 (398)
T ss_pred             -CcEEEEe

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=82.24  E-value=48  Score=31.68  Aligned_cols=30  Identities=10%  Similarity=0.276  Sum_probs=23.3

Q ss_pred             ceeeEEEEeCCCCCcEEEEecCCeEEEEEc
Q 019059          168 LHYLSGGAWDPHDVNAVAATCESSVQFWDL  197 (346)
Q Consensus       168 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~  197 (346)
                      ...|...+|+.|.+.+.....+..|.++|-
T Consensus       112 ~nGIvaa~wS~DE~~~cvvt~~r~il~~~k  141 (1243)
T COG5290         112 SNGIVAASWSADEKTWCVVTSTREILLFDK  141 (1243)
T ss_pred             cCceEEEeeccCCceEEEEEcCceEEEEec
Confidence            346888899999987777777778877763

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.19  E-value=46  Score=31.46  Aligned_cols=52  Identities=4%  Similarity=-0.075  Sum_probs=38.9

Q ss_pred             eeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCC
Q 019059          169 HYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKK  220 (346)
Q Consensus       169 ~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~  220 (346)
                      ..+..+..+|+.++|+.-...|.|.+-+....+..-.+..+.   ...++|.-+.
T Consensus       217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd  271 (829)
T KOG2280|consen  217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND  271 (829)
T ss_pred             ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence            367888999999999999999999999888777665554222   4566666544

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.84  E-value=19  Score=35.31  Aligned_cols=231  Identities=13%  Similarity=0.145  Sum_probs=117.2

Q ss_pred             CCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCC
Q 019059           25 DTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQ  104 (346)
Q Consensus        25 ~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~  104 (346)
                      .-+..++++-.-..+..+++.++++.....++.     .|- ..-++-.+|+.+.++..     ..+++.|++++     
T Consensus        30 TmESDk~icvRe~~~~~~qVvIiDm~d~~~piR-----Rpi-sadSaIm~P~kkvialk-----a~~~lQIFniE-----   93 (1666)
T KOG0985|consen   30 TMESDKFICVREKVGGQNQVVIIDMADPVNPIR-----RPI-SADSAIMNPDKKVIALK-----AGKTLQIFNIE-----   93 (1666)
T ss_pred             eeecCceEEEeccCCCcceEEEEEcCCCccccc-----CCC-CCCchhhCchHHHHHHh-----hCCeEEEEehh-----
Confidence            335566777766777888999999988654432     121 22344568877766664     44589999997     


Q ss_pred             CCCccceeeeeeecc--CCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCc
Q 019059          105 LNSPQLERIAALDAH--VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVN  182 (346)
Q Consensus       105 ~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  182 (346)
                          ....   .+.|  ...|.--.|-.+.. +.+++  +..|.-|..+....+.+.......-....+-...-++..+.
T Consensus        94 ----~KsK---~ksh~m~E~VifWkWIs~kt-i~lVT--~tsV~hws~egds~PvkmfdRh~sL~gcQiInyk~~~~~eW  163 (1666)
T KOG0985|consen   94 ----RKSK---SKAHTMDEDVIFWKWISDKT-IALVT--ATSVYHWSKEGDSAPVKMFDRHRSLNGCQIINYKGNLNAEW  163 (1666)
T ss_pred             ----hhhh---hccCCCCCceEEEEecchhH-HHHhh--hhheeeecccccchHHHHHHhhhccccceEEEeccccccCc
Confidence                2222   2333  44566666766654 22232  47888898875444443333221111112333333444555


Q ss_pred             EEEEec-------CCeEEEEEccCCCccceeeccc-eeEEEeCCCC---Cc-EEEEec---CCCeEEEEEcccCCc---c
Q 019059          183 AVAATC-------ESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKK---KH-LLVTAA---DESGIHLWDLRMLKA---P  244 (346)
Q Consensus       183 l~~~~~-------d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~---~~-~l~~~~---~dg~i~i~d~~~~~~---~  244 (346)
                      ++..+-       -|.+++|....... ..+ .+| ..+..|-.+|   +. ++..+.   ..|++++-.......   +
T Consensus       164 l~LVGIs~r~~rv~G~MQLyS~~rkvS-Q~i-egHaa~Fa~fk~egne~p~~lF~fa~r~~~~GkLhiiEvg~~~tg~~~  241 (1666)
T KOG0985|consen  164 LALVGISARTNRVAGKMQLYSVDRKVS-QPI-EGHAASFAAFKDEGNEVPSCLFSFAVRKPTGGKLHIIEVGDPPTGNMP  241 (1666)
T ss_pred             eeEEeeecccchhheeeeeeeeccchh-hhh-HHHHHHHHHhcccCCCCceEEEEecCCCCCCCeeEEEecCCCccCCCc
Confidence            554431       36788887664321 111 133 1111222222   00 111111   124666655432110   0


Q ss_pred             -----eeeecC---CCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          245 -----IQELPG---HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       245 -----~~~~~~---~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                           +-.+..   ...-.-.+..+.+. ..++....-|.+.+||+.+
T Consensus       242 f~kk~vDvffppda~nDFPvamqvs~k~-~vIyLiTKyG~ihlYdlEt  288 (1666)
T KOG0985|consen  242 FLKKKVDVFFPPDAINDFPVAMQVSAKY-GVIYLITKYGYIHLYDLET  288 (1666)
T ss_pred             chhhhhhccCChhhccccchheeecccc-CeEEEEeecchhhhhhhhh
Confidence                 001110   11112344556566 6777778888999999998

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=80.26  E-value=60  Score=31.56  Aligned_cols=171  Identities=11%  Similarity=0.119  Sum_probs=97.3

Q ss_pred             ccccceEEeeec---CC---CCceEEEEeecCCcceEEEEecC------cccCCCCCccceeeeeeecc---CCceEEEE
Q 019059           63 SHPNEIWDLSSC---PF---DQRIFSTVFSTGESYGAAIWQIP------ELYGQLNSPQLERIAALDAH---VGKINCVL  127 (346)
Q Consensus        63 ~h~~~v~~~~~~---~~---~~~l~~~~~~~~~d~~i~vw~~~------~~~~~~~~~~~~~~~~~~~~---~~~i~~~~  127 (346)
                      .-..+|..|+|.   ..   ....+++-    ....+.|+...      ........-...++..+..+   ..+...++
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr----t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~  152 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAVR----TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVA  152 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEEE----cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEE
Confidence            355788999998   21   22344442    45567777722      11111112233455555432   34778999


Q ss_pred             eecCCCCcEEEEecCCeEEEEEcCCCCCCc--eeeec-ccCC-------CceeeEEEEeCCCCCcEEEEecCCeEEEEEc
Q 019059          128 WWSSGRHDKLVSIDEENIFLWSLDCSNKNA--QVQSK-QSSG-------MLHYLSGGAWDPHDVNAVAATCESSVQFWDL  197 (346)
Q Consensus       128 ~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~--~~~~~-~~~~-------~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~  197 (346)
                      |+|.....+++-...|.-.||++.......  ..... ...+       ....-..+.|.++...|++.. ...+.++|+
T Consensus       153 FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r~~l~~~d~  231 (765)
T PF10214_consen  153 FNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-RSKLMLIDF  231 (765)
T ss_pred             eccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-CCceEEEEC
Confidence            999877657777778999999992211111  11100 0011       112345778887777676665 567899999


Q ss_pred             cCCCccceeecc---c-eeEEEeCCCCCc-EEEEecCCCeEEEEEccc
Q 019059          198 RSMGKTNSIEHA---H-VRNVDYDTKKKH-LLVTAADESGIHLWDLRM  240 (346)
Q Consensus       198 ~~~~~~~~~~~~---~-v~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~  240 (346)
                      ++......+...   . |..+.-+|.... .|+..  ...|...|+..
T Consensus       232 ~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~  277 (765)
T PF10214_consen  232 ESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKS  277 (765)
T ss_pred             CCCCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccC
Confidence            987653312212   1 889988888332 33332  25777778776

These proteins are found in fungi.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	346
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-09
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-09
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		4e-09
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		1e-08
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		2e-08
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		2e-08
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		9e-05
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		9e-05
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		1e-04
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		1e-04
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		6e-04
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		7e-04
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		7e-04
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		8e-04

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 97/223 (43%), Gaps = 14/223 (6%)
Query: 127 LWWSSGRHDKLVSI-DEENIFLWSLDCSNKNAQVQSKQS--SGMLHYLSGGAWDP-HDVN 182
           L W+S     L+S  D+  + LW ++   K  ++   ++  +G    +   AW   H+  
Sbjct: 185 LSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESL 244
Query: 183 AVAATCESSVQFWDLRS--MGKTNSIEHAHVRNVD---YDTKKKHLLVTAADESGIHLWD 237
             +   +  +  WD RS    K + +  AH   V+   ++   + +L T + +  + LWD
Sbjct: 245 FGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 304
Query: 238 LRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVE 297
           LR LK  +     H    + V  +P  +  + S+GTD  +N+W +S     ++  E   E
Sbjct: 305 LRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS-----KIGEEQSAE 359
Query: 298 SPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVR 340
                   LL  +  +   +   +W+  EPW+  S+S D  ++
Sbjct: 360 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 402

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 95/219 (43%), Gaps = 14/219 (6%)
Query: 127 LWWSSGRHDKLVSI-DEENIFLWSLDCSNKNAQVQSKQS--SGMLHYLSGGAWDP-HDVN 182
           L W+S     L+S  D+  + LW ++   K  ++   ++  +G    +   AW   H+  
Sbjct: 185 LSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESL 244
Query: 183 AVAATCESSVQFWDLRS--MGKTNSIEHAHVRNVD---YDTKKKHLLVTAADESGIHLWD 237
             +   +  +  WD RS    K + +  AH   V+   ++   + +L T + +  + LWD
Sbjct: 245 FGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 304
Query: 238 LRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVE 297
           LR LK  +     H    + V  +P  +  + S+GTD  +N+W +S     ++  E   E
Sbjct: 305 LRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS-----KIGEEQSAE 359
Query: 298 SPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYD 336
                   LL  +  +   +   +W+  EPW+  S+S D
Sbjct: 360 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSED 398

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 90/209 (43%), Gaps = 15/209 (7%)
Query: 137 LVSIDEENIFLWSLDCSNKNAQVQSKQS--SGMLHYLSGGAWDP-HDVNAVAATCESSVQ 193
           L + D+  I LW +    K  +V   ++  +G    +   +W   H+    +   +  + 
Sbjct: 194 LSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLM 253
Query: 194 FWDLRSMGKTNSIEH------AHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQE 247
            WD RS   T+   H      A V  + ++   + +L T + +  + LWDLR LK  +  
Sbjct: 254 IWDTRS-NNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS 312
Query: 248 LPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLL 307
              H    + V  +P  +  + S+GTD  +N+W +S    ++ P ++    P      LL
Sbjct: 313 FESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPP-----ELL 367
Query: 308 NSYSDYEDSVYGLAWSSREPWIFASLSYD 336
             +  +   +   +W+  EPW+  S+S D
Sbjct: 368 FIHGGHTAKISDFSWNPNEPWVICSVSED 396

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 90/208 (43%), Gaps = 13/208 (6%)
Query: 137 LVSIDEENIFLWSLDCSNKNAQVQSKQS--SGMLHYLSGGAWDP-HDVNAVAATCESSVQ 193
           L + D+  I LW ++ + K  +V   ++  +G    +   AW   H+    +   +  + 
Sbjct: 202 LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLM 261
Query: 194 FWDLRS--MGKTNSIEHAHVRNVD---YDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL 248
            WD R+    K +    AH   V+   ++   + +L T + +  + LWDLR LK  +   
Sbjct: 262 IWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 321
Query: 249 PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLN 308
             H    + V  +P  +  + S+GTD  +++W +S     ++  E   E        LL 
Sbjct: 322 ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS-----KIGEEQSTEDAEDGPPELLF 376
Query: 309 SYSDYEDSVYGLAWSSREPWIFASLSYD 336
            +  +   +   +W+  EPWI  S+S D
Sbjct: 377 IHGGHTAKISDFSWNPNEPWIICSVSED 404

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 90/209 (43%), Gaps = 13/209 (6%)
Query: 137 LVSIDEENIFLWSLDCSNKNAQVQSKQS--SGMLHYLSGGAWDP-HDVNAVAATCESSVQ 193
           L + D+  I LW ++ + K  +V   ++  +G    +   AW   H+    +   +  + 
Sbjct: 198 LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLM 257
Query: 194 FWDLRS--MGKTNSIEHAHVRNVD---YDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL 248
            WD R+    K +    AH   V+   ++   + +L T + +  + LWDLR LK  +   
Sbjct: 258 IWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 317
Query: 249 PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLN 308
             H    + V  +P  +  + S+GTD  +++W +S     ++  E   E        LL 
Sbjct: 318 ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS-----KIGEEQSTEDAEDGPPELLF 372
Query: 309 SYSDYEDSVYGLAWSSREPWIFASLSYDG 337
            +  +   +   +W+  EPWI  S+S D 
Sbjct: 373 IHGGHTAKISDFSWNPNEPWIICSVSEDN 401

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 90/208 (43%), Gaps = 13/208 (6%)
Query: 137 LVSIDEENIFLWSLDCSNKNAQVQSKQS--SGMLHYLSGGAWDP-HDVNAVAATCESSVQ 193
           L + D+  I LW ++ + K  +V   ++  +G    +   AW   H+    +   +  + 
Sbjct: 200 LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLM 259
Query: 194 FWDLRS--MGKTNSIEHAHVRNVD---YDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL 248
            WD R+    K +    AH   V+   ++   + +L T + +  + LWDLR LK  +   
Sbjct: 260 IWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 319
Query: 249 PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLN 308
             H    + V  +P  +  + S+GTD  +++W +S     ++  E   E        LL 
Sbjct: 320 ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS-----KIGEEQSTEDAEDGPPELLF 374
Query: 309 SYSDYEDSVYGLAWSSREPWIFASLSYD 336
            +  +   +   +W+  EPWI  S+S D
Sbjct: 375 IHGGHTAKISDFSWNPNEPWIICSVSED 402

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 87/201 (43%), Gaps = 32/201 (15%)
Query: 141 DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRS- 199
           D++ + LW     N+N Q   +  +G    + G A+ P      +A+ + +V+ W+    
Sbjct: 323 DDKTVKLW-----NRNGQ-HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ 376
Query: 200 MGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVC 259
           + +T +   + VR V + +     + +A+D+  + LW+       +Q L GH+   W V 
Sbjct: 377 LLQTLTGHSSSVRGVAF-SPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVWGVA 433
Query: 260 CNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYG 319
            +P+ D  I SA  D TV LW                     R   LL + + +  SV G
Sbjct: 434 FSPD-DQTIASASDDKTVKLW--------------------NRNGQLLQTLTGHSSSVRG 472
Query: 320 LAWSSREPWIFASLSYDGRVR 340
           +A+S  +    AS S D  V+
Sbjct: 473 VAFSP-DGQTIASASDDKTVK 492

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 89/210 (42%), Gaps = 27/210 (12%)
Query: 129 WSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC 188
           WSSG  + L    + +++LWS    +    +Q +Q      Y+S  AW          T 
Sbjct: 113 WSSG--NVLAVALDNSVYLWSASSGDILQLLQMEQPG---EYISSVAWIKEGNYLAVGTS 167
Query: 189 ESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL 248
            + VQ WD++   +  ++  +H   V   +   ++L + +    IH  D+R+ +  +  L
Sbjct: 168 SAEVQLWDVQQQKRLRNMT-SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATL 226
Query: 249 PGHTHWTWAVCCNPEYDG-FILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLL 307
            GH+     +   P  DG  + S G D+ VN+W          PS     +P +     L
Sbjct: 227 SGHSQEVCGLRWAP--DGRHLASGGNDNLVNVW----------PS-----APGEGGWVPL 269
Query: 308 NSYSDYEDSVYGLAWSSREPWIFASLSYDG 337
            +++ ++ +V  +AW    PW    L+  G
Sbjct: 270 QTFTQHQGAVKAVAWC---PWQSNVLATGG 296

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 89/210 (42%), Gaps = 27/210 (12%)
Query: 129 WSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC 188
           WSSG  + L    + +++LWS    +    +Q +Q      Y+S  AW          T 
Sbjct: 124 WSSG--NVLAVALDNSVYLWSASSGDILQLLQMEQPG---EYISSVAWIKEGNYLAVGTS 178
Query: 189 ESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL 248
            + VQ WD++   +  ++  +H   V   +   ++L + +    IH  D+R+ +  +  L
Sbjct: 179 SAEVQLWDVQQQKRLRNMT-SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATL 237
Query: 249 PGHTHWTWAVCCNPEYDG-FILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLL 307
            GH+     +   P  DG  + S G D+ VN+W          PS     +P +     L
Sbjct: 238 SGHSQEVCGLRWAP--DGRHLASGGNDNLVNVW----------PS-----APGEGGWVPL 280
Query: 308 NSYSDYEDSVYGLAWSSREPWIFASLSYDG 337
            +++ ++ +V  +AW    PW    L+  G
Sbjct: 281 QTFTQHQGAVKAVAWC---PWQSNVLATGG 307

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 89/210 (42%), Gaps = 27/210 (12%)
Query: 129 WSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC 188
           WSSG  + L    + +++LWS    +    +Q +Q      Y+S  AW          T 
Sbjct: 33  WSSG--NVLAVALDNSVYLWSASSGDILQLLQMEQPG---EYISSVAWIKEGNYLAVGTS 87
Query: 189 ESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL 248
            + VQ WD++   +  ++  +H   V   +   ++L + +    IH  D+R+ +  +  L
Sbjct: 88  SAEVQLWDVQQQKRLRNMT-SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATL 146
Query: 249 PGHTHWTWAVCCNPEYDG-FILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLL 307
            GH+     +   P  DG  + S G D+ VN+W          PS     +P +     L
Sbjct: 147 SGHSQEVCGLRWAP--DGRHLASGGNDNLVNVW----------PS-----APGEGGWVPL 189
Query: 308 NSYSDYEDSVYGLAWSSREPWIFASLSYDG 337
            +++ ++ +V  +AW    PW    L+  G
Sbjct: 190 QTFTQHQGAVKAVAWC---PWQSNVLATGG 216

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 7/124 (5%)
Query: 166 GMLHYLSGGAWDPHDVNAVAATC-ESSVQFWDLRSMGKTNSIEHAHVRNVDY----DTKK 220
           G  H++   A++P D +  A+ C + +V+ W L       ++     R V+Y        
Sbjct: 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPD 197
Query: 221 KHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLW 280
           K  ++TA+D+  I +WD +  K+ +  L GH         +P     I+S   D T+ +W
Sbjct: 198 KPYMITASDDLTIKIWDYQT-KSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIW 255
Query: 281 LVST 284
             ST
Sbjct: 256 NSST 259

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 76/179 (42%), Gaps = 12/179 (6%)
Query: 111 ERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHY 170
           E++   +AH   I  +    +  +  L   D+  + LW+ +    N     +   G  H+
Sbjct: 88  EKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNWE----NNWALEQTFEGHEHF 142
Query: 171 LSGGAWDPHDVNAVAATC-ESSVQFWDLRSMGKTNSIEHAHVRNVDY----DTKKKHLLV 225
           +   A++P D +  A+ C + +V+ W L       ++     R V+Y        K  ++
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 226 TAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284
           TA+D+  I +WD +  K+ +  L GH         +P     I+S   D T+ +W  ST
Sbjct: 203 TASDDLTIKIWDYQT-KSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSST 259

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 76/179 (42%), Gaps = 12/179 (6%)
Query: 111 ERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHY 170
           E++   +AH   I  +    +  +  L   D+  + LW+ +    N     +   G  H+
Sbjct: 88  EKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNWE----NNWALEQTFEGHEHF 142
Query: 171 LSGGAWDPHDVNAVAATC-ESSVQFWDLRSMGKTNSIEHAHVRNVDY----DTKKKHLLV 225
           +   A++P D +  A+ C + +V+ W L       ++     R V+Y        K  ++
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 226 TAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284
           TA+D+  I +WD +  K+ +  L GH         +P     I+S   D T+ +W  ST
Sbjct: 203 TASDDLTIKIWDYQT-KSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSST 259

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 68/158 (43%), Gaps = 13/158 (8%)
Query: 166 GMLHYLSGGAWDPHDVNAVAATC-ESSVQFWDLRSMGKTNSIEHAHVRNVDY----DTKK 220
           G  H++   A++P D +  A+ C + +V+ W L       ++     R V+Y        
Sbjct: 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPD 197
Query: 221 KHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLW 280
           K  ++TA+D+  I +WD +  K+ +  L GH         +P     I+S   D T+ +W
Sbjct: 198 KPYMITASDDLTIKIWDYQT-KSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIW 255
Query: 281 LVSTSNHDELPSESLVES------PNQRANSLLNSYSD 312
             ST   ++  +  L  S      P  R N + + + +
Sbjct: 256 NSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDN 293

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	346
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.98
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.96
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.95
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.95
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.95
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.94
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.94
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.93
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.93
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.93
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.93
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.93
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.93
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.92
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.92
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.91
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.91
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.91
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.91
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.9
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.9
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.9
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.9
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.9
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.89
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.89
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.89
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.88
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.87
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.86
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.86
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.86
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.84
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.84
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.82
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.82
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.81
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.81
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.81
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.81
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.8
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.8
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.78
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.78
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.77
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.77
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.77
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.77
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.75
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.74
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.74
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.74
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.73
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.71
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.71
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.7
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.7
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.69
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.68
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.68
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.68
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.66
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.64
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.64
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.64
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.62
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.62
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.62
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.61
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.6
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.59
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.58
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.57
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.57
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.55
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.53
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.53
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.51
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.48
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.45
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.45
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.45
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.41
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.4
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.4
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.37
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.37
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.36
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.35
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.34
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.33
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.33
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.32
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.26
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.26
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.25
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.23
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.22
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.21
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.18
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.17
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.13
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.09
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.06
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.06
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.06
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.05
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.04
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.02
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.01
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.0
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.95
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.95
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.94
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.93
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.91
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.9
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.89
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.88
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.88
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.86
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.86
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.85
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.84
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.82
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.81
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.81
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.8
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.77
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.73
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.73
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.72
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.71
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.71
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.71
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.7
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.66
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.65
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.64
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.64
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.64
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.62
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	98.58
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.55
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.54
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.49
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.46
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.46
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.45
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.43
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.43
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.37
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.34
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.3
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.3
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.3
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.25
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.25
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.21
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.21
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.2
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.18
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.16
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.15
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.1
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	98.09
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.09
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.09
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.09
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.09
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.09
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.04
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.96
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.94
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.94
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.83
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.83
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.79
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.73
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.64
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.59
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.58
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.58
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.5
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.39
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.39
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.13
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.94
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.88
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.85
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.76
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.76
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.7
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.7
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.65
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	96.6
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.51
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.03
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	95.93
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	95.48
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	95.36
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.27
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	95.26
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	94.01
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	93.93
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	93.81
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	93.73
3ott_A	758	Two-component system sensor histidine kinase; beta	93.73
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	93.42
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	92.55
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	92.32
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	92.21
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	92.0
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	91.78
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	91.66
3ott_A	758	Two-component system sensor histidine kinase; beta	91.45
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	91.17
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	90.01
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	89.11
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	88.54
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	87.67
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	84.5
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	83.5
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	81.26

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.4e-45  Score=307.21  Aligned_cols=286  Identities=16%  Similarity=0.270  Sum_probs=243.6

Q ss_pred             ccceeeEeeeccCCCC----cceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeec
Q 019059           12 LKYQARCISDVKADTD----HTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFST   87 (346)
Q Consensus        12 ~~~~~~~~~~~~~~~~----~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~   87 (346)
                      ++.+...|.++.+.++    ...++.|    +.++.+.+|++.... ......+.+|...|.+++|+|++..++++    
T Consensus        28 ~~~H~~~V~~v~~~~~~~~~~~~l~tg----s~D~~v~vW~~~~~~-~~~~~~l~gh~~~v~~~~~~~~~~~l~s~----   98 (321)
T 3ow8_A           28 EQAHDDAIWSVAWGTNKKENSETVVTG----SLDDLVKVWKWRDER-LDLQWSLEGHQLGVVSVDISHTLPIAASS----   98 (321)
T ss_dssp             TTSSSSCEEEEEEC-------CEEEEE----ETTSCEEEEEEETTE-EEEEEEECCCSSCEEEEEECSSSSEEEEE----
T ss_pred             cccCCCcEEEEEEecCCCCCCCEEEEE----cCCCCEEEEECCCCC-eeeeeeeccCCCCEEEEEECCCCCEEEEE----
Confidence            3445556666666553    4456666    468899999987643 22335678999999999999999887775    


Q ss_pred             CCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCC
Q 019059           88 GESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGM  167 (346)
Q Consensus        88 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~  167 (346)
                      +.|+.|++||+.         ..+.+..+..|...+.+++|+|+++. +++++.|+.|++|++++++....+.     .+
T Consensus        99 s~D~~i~lWd~~---------~~~~~~~~~~~~~~~~~~~~spdg~~-l~~g~~dg~v~i~~~~~~~~~~~~~-----~~  163 (321)
T 3ow8_A           99 SLDAHIRLWDLE---------NGKQIKSIDAGPVDAWTLAFSPDSQY-LATGTHVGKVNIFGVESGKKEYSLD-----TR  163 (321)
T ss_dssp             ETTSEEEEEETT---------TTEEEEEEECCTTCCCCEEECTTSSE-EEEECTTSEEEEEETTTCSEEEEEE-----CS
T ss_pred             eCCCcEEEEECC---------CCCEEEEEeCCCccEEEEEECCCCCE-EEEEcCCCcEEEEEcCCCceeEEec-----CC
Confidence            699999999998         67888888899999999999999994 7777889999999998765433332     24


Q ss_pred             ceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcc
Q 019059          168 LHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAP  244 (346)
Q Consensus       168 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  244 (346)
                      ...+.+++|+|+++++++++.|+.|++||+++++.+..+. +|   |.+++|+|++. +|++++.|+.|++||++. ...
T Consensus       164 ~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~spd~~-~l~s~s~dg~i~iwd~~~-~~~  240 (321)
T 3ow8_A          164 GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLE-GHAMPIRSLTFSPDSQ-LLVTASDDGYIKIYDVQH-ANL  240 (321)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCCCEEEECTTSC-EEEEECTTSCEEEEETTT-CCE
T ss_pred             CceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc-ccCCceeEEEEcCCCC-EEEEEcCCCeEEEEECCC-cce
Confidence            4579999999999999999999999999999998887776 44   99999999998 899999999999999997 557


Q ss_pred             eeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCC
Q 019059          245 IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS  324 (346)
Q Consensus       245 ~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  324 (346)
                      +..+.+|...|.+++|+|++ .+|++++.|++|++||+++                   ++++..+.+|...|++++|+|
T Consensus       241 ~~~~~~h~~~v~~~~~sp~~-~~l~s~s~D~~v~iwd~~~-------------------~~~~~~~~~h~~~v~~v~~s~  300 (321)
T 3ow8_A          241 AGTLSGHASWVLNVAFCPDD-THFVSSSSDKSVKVWDVGT-------------------RTCVHTFFDHQDQVWGVKYNG  300 (321)
T ss_dssp             EEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTT-------------------TEEEEEECCCSSCEEEEEECT
T ss_pred             eEEEcCCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCC-------------------CEEEEEEcCCCCcEEEEEECC
Confidence            88899999999999999999 9999999999999999998                   889999999999999999999


Q ss_pred             CCCcEEEEeecCCeEEEeeec
Q 019059          325 REPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       325 ~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      +++ +|++++.|+.|++||+.
T Consensus       301 ~g~-~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          301 NGS-KIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             TSS-EEEEEETTCCEEEEECC
T ss_pred             CCC-EEEEEeCCCeEEEEeCC
Confidence            997 89999999999999963

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.7e-45  Score=318.93  Aligned_cols=283  Identities=16%  Similarity=0.291  Sum_probs=245.5

Q ss_pred             cceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcce
Q 019059           13 KYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYG   92 (346)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~   92 (346)
                      ..+...+..+.++++...++.|.    .++.|.+|++.....   ...+.+|.+.|.+++|+|+++.|+++    +.|++
T Consensus       105 ~gh~~~V~~~~~~p~~~~l~s~s----~Dg~i~vwd~~~~~~---~~~l~~h~~~V~~v~~~~~~~~l~sg----s~D~~  173 (410)
T 1vyh_C          105 SGHRSPVTRVIFHPVFSVMVSAS----EDATIKVWDYETGDF---ERTLKGHTDSVQDISFDHSGKLLASC----SADMT  173 (410)
T ss_dssp             ECCSSCEEEEEECSSSSEEEEEE----SSSCEEEEETTTCCC---CEEECCCSSCEEEEEECTTSSEEEEE----ETTSC
T ss_pred             cccCCcEEEEEEcCCCCEEEEEe----CCCeEEEEECCCCcE---EEEEeccCCcEEEEEEcCCCCEEEEE----eCCCe
Confidence            33445677778888888887774    678999999876532   35667899999999999999888775    69999


Q ss_pred             EEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeE
Q 019059           93 AAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLS  172 (346)
Q Consensus        93 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~  172 (346)
                      |++||+.         ..+.+..+.+|...|.+++|+|++.. +++++.|+.|++||+.++.....+     .+|...+.
T Consensus       174 i~iwd~~---------~~~~~~~~~~h~~~V~~v~~~p~~~~-l~s~s~D~~i~~wd~~~~~~~~~~-----~~h~~~v~  238 (410)
T 1vyh_C          174 IKLWDFQ---------GFECIRTMHGHDHNVSSVSIMPNGDH-IVSASRDKTIKMWEVQTGYCVKTF-----TGHREWVR  238 (410)
T ss_dssp             CCEEETT---------SSCEEECCCCCSSCEEEEEECSSSSE-EEEEETTSEEEEEETTTCCEEEEE-----ECCSSCEE
T ss_pred             EEEEeCC---------CCceeEEEcCCCCCEEEEEEeCCCCE-EEEEeCCCeEEEEECCCCcEEEEE-----eCCCccEE
Confidence            9999998         67788889999999999999999984 777789999999999876543332     34667899


Q ss_pred             EEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCC--------------------CCcEEEEecC
Q 019059          173 GGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTK--------------------KKHLLVTAAD  229 (346)
Q Consensus       173 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~--------------------~~~~l~~~~~  229 (346)
                      .+.|+|++..+++++.|+.|++||++++++...+. +|   |.+++|+|+                    +. ++++|+.
T Consensus       239 ~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~l~sgs~  316 (410)
T 1vyh_C          239 MVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR-EHRHVVECISWAPESSYSSISEATGSETKKSGKPGP-FLLSGSR  316 (410)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECCSCGGGGGGGCCSCC-------CC-EEEEEET
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEECCCCceeeEec-CCCceEEEEEEcCcccccchhhhccccccccCCCCC-EEEEEeC
Confidence            99999999999999999999999999998877775 44   999999996                    44 8999999


Q ss_pred             CCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccc
Q 019059          230 ESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNS  309 (346)
Q Consensus       230 dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (346)
                      |+.|++||+++ ..++..+.+|...|++++|+|++ .+|++++.|+.|++||++.                   ++++..
T Consensus       317 D~~i~iwd~~~-~~~~~~~~~h~~~v~~v~~~~~g-~~l~s~s~D~~i~vwd~~~-------------------~~~~~~  375 (410)
T 1vyh_C          317 DKTIKMWDVST-GMCLMTLVGHDNWVRGVLFHSGG-KFILSCADDKTLRVWDYKN-------------------KRCMKT  375 (410)
T ss_dssp             TSEEEEEETTT-TEEEEEEECCSSCEEEEEECSSS-SCEEEEETTTEEEEECCTT-------------------SCCCEE
T ss_pred             CCeEEEEECCC-CceEEEEECCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCC-------------------CceEEE
Confidence            99999999997 56888899999999999999999 9999999999999999998                   788889


Q ss_pred             cccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          310 YSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       310 ~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      +.+|...|++++|+|+++ +|++++.|++|++|++.
T Consensus       376 ~~~h~~~v~~l~~~~~~~-~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          376 LNAHEHFVTSLDFHKTAP-YVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             EECCSSCEEEEEECSSSS-CEEEEETTSEEEEEC--
T ss_pred             EcCCCCcEEEEEEcCCCC-EEEEEeCCCcEEEEeCC
Confidence            999999999999999997 89999999999999863

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=9.6e-45  Score=307.44  Aligned_cols=292  Identities=15%  Similarity=0.206  Sum_probs=223.5

Q ss_pred             eEeeeccCCCCcceEEEeecccCC--CCeEEEEEecCCC-CeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceE
Q 019059           17 RCISDVKADTDHTSFLTGTLSLKE--ENEVHLLRLSSGG-TELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGA   93 (346)
Q Consensus        17 ~~~~~~~~~~~~~~~~~g~~~~~~--~~~i~~~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i   93 (346)
                      +.+.++.+++++..++.+......  ++.+..++-.... ..........|...|.+++|+|++ .++++    +.|+.|
T Consensus        31 ~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~----s~dg~v  105 (344)
T 4gqb_B           31 RQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVA----SDSGAV  105 (344)
T ss_dssp             SEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEE----ETTSEE
T ss_pred             CCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEE----ECCCEE
Confidence            457778889999877766421110  2222222211110 111112334567889999999975 56654    689999


Q ss_pred             EEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEE
Q 019059           94 AIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSG  173 (346)
Q Consensus        94 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~  173 (346)
                      +|||+....     ........+.+|.+.|.+++|+|++++ +++++.|+.|++||+.+++....     ..+|...|.+
T Consensus       106 ~lWd~~~~~-----~~~~~~~~~~~H~~~V~~v~~spdg~~-l~sgs~d~~i~iwd~~~~~~~~~-----~~~h~~~V~~  174 (344)
T 4gqb_B          106 ELWELDENE-----TLIVSKFCKYEHDDIVSTVSVLSSGTQ-AVSGSKDICIKVWDLAQQVVLSS-----YRAHAAQVTC  174 (344)
T ss_dssp             EEEEECTTS-----SCEEEEEEEECCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTTEEEEE-----ECCCSSCEEE
T ss_pred             EEEeccCCC-----ceeEeeccccCCCCCEEEEEECCCCCE-EEEEeCCCeEEEEECCCCcEEEE-----EcCcCCceEE
Confidence            999998210     011122345589999999999999994 77778999999999987643222     3457789999


Q ss_pred             EEeCCCCCc-EEEEecCCeEEEEEccCCCccceeec---cc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeee
Q 019059          174 GAWDPHDVN-AVAATCESSVQFWDLRSMGKTNSIEH---AH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL  248 (346)
Q Consensus       174 ~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~---~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  248 (346)
                      ++|+|++.. +++++.|+.|++||++++++...+..   .+ +.+++|+|++..++++|+.|+.|++||+++ .+++..+
T Consensus       175 ~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~-~~~~~~~  253 (344)
T 4gqb_B          175 VAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS-TSCVLSS  253 (344)
T ss_dssp             EEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC---CCEEE
T ss_pred             EEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCC-CcEEEEE
Confidence            999999865 67888999999999999988776642   22 899999997766899999999999999997 5688999


Q ss_pred             cCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCc
Q 019059          249 PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPW  328 (346)
Q Consensus       249 ~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  328 (346)
                      .+|...|++++|+|++..+|++|+.|++|+|||+++                   +++ ..+.+|.+.|++++|+|+++.
T Consensus       254 ~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~-------------------~~~-~~~~~H~~~V~~v~~sp~~~~  313 (344)
T 4gqb_B          254 AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL-------------------SEL-FRSQAHRDFVRDATWSPLNHS  313 (344)
T ss_dssp             ECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTC-------------------CEE-EEECCCSSCEEEEEECSSSTT
T ss_pred             cCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCC-------------------CcE-EEEcCCCCCEEEEEEeCCCCe
Confidence            999999999999999867899999999999999997                   554 457899999999999999987


Q ss_pred             EEEEeecCCeEEEeeec
Q 019059          329 IFASLSYDGRVRNHMLE  345 (346)
Q Consensus       329 ~l~s~~~d~~v~vw~~~  345 (346)
                      +|++++.|++|++|++.
T Consensus       314 llas~s~D~~v~~w~v~  330 (344)
T 4gqb_B          314 LLTTVGWDHQVVHHVVP  330 (344)
T ss_dssp             EEEEEETTSCEEEEECC
T ss_pred             EEEEEcCCCeEEEEECC
Confidence            88999999999999985

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.3e-44  Score=308.77  Aligned_cols=293  Identities=16%  Similarity=0.212  Sum_probs=227.5

Q ss_pred             eeeEeeeccCCCCcceEEEeecccC--CCCeEEEEEecCCCC-eEEEeeeeccccceEEeeecCCCCceEEEEeecCCcc
Q 019059           15 QARCISDVKADTDHTSFLTGTLSLK--EENEVHLLRLSSGGT-ELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESY   91 (346)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~i~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~   91 (346)
                      +.+.|.++.++|++..++.|.....  -++.+++|+...... ........+|...|.+++|+|++..+ ++    +.|+
T Consensus        41 H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l-~~----s~dg  115 (357)
T 4g56_B           41 MEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGIL-VA----SDSG  115 (357)
T ss_dssp             CCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEE-EE----ETTS
T ss_pred             ccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEE-EE----ECCC
Confidence            3467888999999999998863211  256777776654321 11223445789999999999987644 43    4789


Q ss_pred             eEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceee
Q 019059           92 GAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYL  171 (346)
Q Consensus        92 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v  171 (346)
                      .|+|||+.....     .........+|...|.+++|+|+++. +++++.|+.|++||+.+++....     ..+|...|
T Consensus       116 ~v~lWd~~~~~~-----~~~~~~~~~~h~~~V~~v~~spdg~~-l~sgs~dg~v~iwd~~~~~~~~~-----~~~h~~~v  184 (357)
T 4g56_B          116 AVELWEILEKES-----LLVNKFAKYEHDDIVKTLSVFSDGTQ-AVSGGKDFSVKVWDLSQKAVLKS-----YNAHSSEV  184 (357)
T ss_dssp             CEEEC-------------CCCCEEECCCSSCEEEEEECSSSSE-EEEEETTSCEEEEETTTTEEEEE-----ECCCSSCE
T ss_pred             EEEEeeccccce-----eEEEeeccCCCCCCEEEEEECCCCCE-EEEEeCCCeEEEEECCCCcEEEE-----EcCCCCCE
Confidence            999999972100     01111234579999999999999984 77778899999999987543322     23577799


Q ss_pred             EEEEeCCCCC-cEEEEecCCeEEEEEccCCCccceeecc-c---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCccee
Q 019059          172 SGGAWDPHDV-NAVAATCESSVQFWDLRSMGKTNSIEHA-H---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQ  246 (346)
Q Consensus       172 ~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  246 (346)
                      .+++|+|++. .+++++.|+.|++||++++++...+... +   +.+++|+|++..+|++|+.|+.|++||+++ ..++.
T Consensus       185 ~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~-~~~~~  263 (357)
T 4g56_B          185 NCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN-PDSAQ  263 (357)
T ss_dssp             EEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC-GGGCE
T ss_pred             EEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCC-CcEeE
Confidence            9999999886 6788889999999999998877655422 2   999999998776899999999999999997 56788


Q ss_pred             eecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCC-C
Q 019059          247 ELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS-R  325 (346)
Q Consensus       247 ~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~  325 (346)
                      .+.+|...|++++|+|++..+|++++.|++|+|||+++                   ++++..+ +|...|++++|+| +
T Consensus       264 ~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~-------------------~~~~~~~-~H~~~V~~vafsP~d  323 (357)
T 4g56_B          264 TSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF-------------------SEVFRDL-SHRDFVTGVAWSPLD  323 (357)
T ss_dssp             EECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS-------------------CEEEEEC-CCSSCEEEEEECSSS
T ss_pred             EEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC-------------------CcEeEEC-CCCCCEEEEEEeCCC
Confidence            99999999999999999867899999999999999998                   6666544 7999999999999 5


Q ss_pred             CCcEEEEeecCCeEEEeeec
Q 019059          326 EPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       326 ~~~~l~s~~~d~~v~vw~~~  345 (346)
                      +. +|++++.|++|++|++.
T Consensus       324 ~~-~l~s~s~Dg~v~iW~~~  342 (357)
T 4g56_B          324 HS-KFTTVGWDHKVLHHHLP  342 (357)
T ss_dssp             TT-EEEEEETTSCEEEEECC
T ss_pred             CC-EEEEEcCCCeEEEEECC
Confidence            65 99999999999999985

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=3.3e-43  Score=298.46  Aligned_cols=286  Identities=14%  Similarity=0.211  Sum_probs=240.6

Q ss_pred             cccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCc
Q 019059           11 GLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGES   90 (346)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d   90 (346)
                      .+..+...|..+.+++++..++.|+    .++.+.+|++....   ....+..|...|.+++|+|+++.++++    +.|
T Consensus        50 ~l~gH~~~v~~~~~s~d~~~l~s~s----~Dg~v~iWd~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~s~----~~d  118 (340)
T 1got_B           50 TLRGHLAKIYAMHWGTDSRLLLSAS----QDGKLIIWDSYTTN---KVHAIPLRSSWVMTCAYAPSGNYVACG----GLD  118 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEE----TTTEEEEEETTTCC---EEEEEECSSSCEEEEEECTTSSEEEEE----ETT
T ss_pred             eecCCCCceEEEEECCCCCEEEEEe----CCCcEEEEECCCCC---cceEeecCCccEEEEEECCCCCEEEEE----eCC
Confidence            3444556778888889988888774    68899999987653   234566799999999999999988875    689


Q ss_pred             ceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCcee
Q 019059           91 YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHY  170 (346)
Q Consensus        91 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  170 (346)
                      +.+++|++....     ........+.+|...|.++.|++++.  +++++.|+.|++||+.+++....     ..+|...
T Consensus       119 ~~v~iw~~~~~~-----~~~~~~~~~~~h~~~v~~~~~~~~~~--l~s~s~d~~i~~wd~~~~~~~~~-----~~~h~~~  186 (340)
T 1got_B          119 NICSIYNLKTRE-----GNVRVSRELAGHTGYLSCCRFLDDNQ--IVTSSGDTTCALWDIETGQQTTT-----FTGHTGD  186 (340)
T ss_dssp             CEEEEEETTTCS-----BSCEEEEEEECCSSCEEEEEEEETTE--EEEEETTSCEEEEETTTTEEEEE-----ECCCSSC
T ss_pred             CeEEEEECccCC-----CcceeEEEecCCCccEEEEEECCCCc--EEEEECCCcEEEEECCCCcEEEE-----EcCCCCc
Confidence            999999987311     12355667889999999999999886  78888899999999987653322     2357779


Q ss_pred             eEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceee
Q 019059          171 LSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQE  247 (346)
Q Consensus       171 v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  247 (346)
                      |.+++|+|+++.+++++.|+.|++||++++++...+. +|   |.+++|+|++. .|++++.|+.|++||++. ...+..
T Consensus       187 v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~-~h~~~v~~v~~~p~~~-~l~s~s~d~~v~iwd~~~-~~~~~~  263 (340)
T 1got_B          187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT-GHESDINAICFFPNGN-AFATGSDDATCRLFDLRA-DQELMT  263 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC-CCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTT-TEEEEE
T ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEc-CCcCCEEEEEEcCCCC-EEEEEcCCCcEEEEECCC-CcEEEE
Confidence            9999999999999999999999999999998887776 44   99999999998 899999999999999987 445555


Q ss_pred             ec--CCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCC
Q 019059          248 LP--GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSR  325 (346)
Q Consensus       248 ~~--~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  325 (346)
                      +.  .+...|.+++|+|++ .+|++|+.|+.|++||+..                   .+.+..+.+|...|.+++|+|+
T Consensus       264 ~~~~~~~~~v~~~~~s~~g-~~l~~g~~d~~i~vwd~~~-------------------~~~~~~~~~h~~~v~~~~~s~d  323 (340)
T 1got_B          264 YSHDNIICGITSVSFSKSG-RLLLAGYDDFNCNVWDALK-------------------ADRAGVLAGHDNRVSCLGVTDD  323 (340)
T ss_dssp             ECCTTCCSCEEEEEECTTS-SEEEEEETTSEEEEEETTT-------------------CCEEEEEECCSSCEEEEEECTT
T ss_pred             EccCCcccceEEEEECCCC-CEEEEECCCCeEEEEEccc-------------------CcEeeEeecCCCcEEEEEEcCC
Confidence            54  233579999999999 9999999999999999998                   7888889999999999999999


Q ss_pred             CCcEEEEeecCCeEEEee
Q 019059          326 EPWIFASLSYDGRVRNHM  343 (346)
Q Consensus       326 ~~~~l~s~~~d~~v~vw~  343 (346)
                      +. +|++++.|+.|++||
T Consensus       324 g~-~l~s~s~D~~i~iWd  340 (340)
T 1got_B          324 GM-AVATGSWDSFLKIWN  340 (340)
T ss_dssp             SS-CEEEEETTSCEEEEC
T ss_pred             CC-EEEEEcCCccEEecC
Confidence            97 899999999999997

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.4e-43  Score=296.16  Aligned_cols=248  Identities=14%  Similarity=0.217  Sum_probs=214.3

Q ss_pred             EeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEE
Q 019059           58 CEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKL  137 (346)
Q Consensus        58 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  137 (346)
                      ...+.+|.+.|.+++|+|+++.|+++    +.|+.|++||++         +...+..+..|..+|.+++|+|+++. ++
T Consensus         6 ~~~~~~h~~~V~~~~fsp~~~~l~s~----~~dg~v~lWd~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~-l~   71 (304)
T 2ynn_A            6 KKTFSNRSDRVKGIDFHPTEPWVLTT----LYSGRVELWNYE---------TQVEVRSIQVTETPVRAGKFIARKNW-II   71 (304)
T ss_dssp             EEEEEEECSCEEEEEECSSSSEEEEE----ETTSEEEEEETT---------TTEEEEEEECCSSCEEEEEEEGGGTE-EE
T ss_pred             EEeecCCCCceEEEEECCCCCEEEEE----cCCCcEEEEECC---------CCceeEEeeccCCcEEEEEEeCCCCE-EE
Confidence            35677899999999999999988885    689999999998         67788889999999999999999984 77


Q ss_pred             EEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEE
Q 019059          138 VSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNV  214 (346)
Q Consensus       138 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~  214 (346)
                      +++.|+.|++||+.+++....+     .+|...|.+++|+|+++++++++.|++|++||++++........+|   |.++
T Consensus        72 s~s~d~~i~vwd~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v  146 (304)
T 2ynn_A           72 VGSDDFRIRVFNYNTGEKVVDF-----EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCV  146 (304)
T ss_dssp             EEETTSEEEEEETTTCCEEEEE-----ECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEE
T ss_pred             EECCCCEEEEEECCCCcEEEEE-----eCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEE
Confidence            7789999999999977643333     3477799999999999999999999999999999886554444455   9999


Q ss_pred             EeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCC--CCCcEEEEecCCCeEEEEecCCCCCCCCCc
Q 019059          215 DYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNP--EYDGFILSAGTDSTVNLWLVSTSNHDELPS  292 (346)
Q Consensus       215 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~--~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  292 (346)
                      +|+|.+..+|++|+.|+.|++||++...........|...+..+.|+|  ++ .+|++++.|++|++||+++        
T Consensus       147 ~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~D~~i~iWd~~~--------  217 (304)
T 2ynn_A          147 AFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDK-PYMITASDDLTIKIWDYQT--------  217 (304)
T ss_dssp             EECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTC-CEEEEEETTSEEEEEETTT--------
T ss_pred             EECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCC-CEEEEEcCCCeEEEEeCCC--------
Confidence            999954448999999999999999874433344446778899999987  55 7999999999999999998        


Q ss_pred             ccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          293 ESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                                 ++++..+.+|...|.+++|+|+++ +|++++.|++|++||++
T Consensus       218 -----------~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~Dg~i~iWd~~  258 (304)
T 2ynn_A          218 -----------KSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSS  258 (304)
T ss_dssp             -----------TEEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETT
T ss_pred             -----------CccceeeCCCCCCEEEEEECCCCC-EEEEEcCCCeEEEEECC
Confidence                       888999999999999999999997 99999999999999975

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=5.3e-43  Score=297.75  Aligned_cols=307  Identities=15%  Similarity=0.245  Sum_probs=237.4

Q ss_pred             eeecccceee-EeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEee
Q 019059            8 IGYGLKYQAR-CISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFS   86 (346)
Q Consensus         8 ~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~   86 (346)
                      ++..+..+.. .+..+.+++++..++.|.    .++.|++|++.............+|...|.+++|+|++++|+++   
T Consensus         7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~----~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~---   79 (345)
T 3fm0_A            7 LLGRVPAHPDSRCWFLAWNPAGTLLASCG----GDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASA---   79 (345)
T ss_dssp             EEEEECCSTTSCEEEEEECTTSSCEEEEE----TTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEE---
T ss_pred             EeeeecCCCCCcEEEEEECCCCCEEEEEc----CCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEE---
Confidence            3444444433 566788889999998874    67899999987753222223346899999999999999988885   


Q ss_pred             cCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCC
Q 019059           87 TGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG  166 (346)
Q Consensus        87 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~  166 (346)
                       +.|+.+++|++..       ...+.+..+.+|...|.+++|+|+++. +++++.|+.|++||+.+.......  ....+
T Consensus        80 -s~D~~v~iw~~~~-------~~~~~~~~~~~h~~~v~~v~~sp~~~~-l~s~s~D~~v~iwd~~~~~~~~~~--~~~~~  148 (345)
T 3fm0_A           80 -SFDATTCIWKKNQ-------DDFECVTTLEGHENEVKSVAWAPSGNL-LATCSRDKSVWVWEVDEEDEYECV--SVLNS  148 (345)
T ss_dssp             -ETTSCEEEEEECC-------C-EEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEEECTTSCEEEE--EEECC
T ss_pred             -ECCCcEEEEEccC-------CCeEEEEEccCCCCCceEEEEeCCCCE-EEEEECCCeEEEEECCCCCCeEEE--EEecC
Confidence             6999999999872       234567788999999999999999984 777789999999999865432211  22345


Q ss_pred             CceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCcc--ceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccC
Q 019059          167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKT--NSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRML  241 (346)
Q Consensus       167 ~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  241 (346)
                      |...|.+++|+|++..|++++.|+.|++||+++++..  ..+. +|   |.+++|+|++. +|++++.|++|++||....
T Consensus       149 h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~-~h~~~v~~l~~sp~g~-~l~s~s~D~~v~iW~~~~~  226 (345)
T 3fm0_A          149 HTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLE-GHESTVWSLAFDPSGQ-RLASCSDDRTVRIWRQYLP  226 (345)
T ss_dssp             CCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECTTSS-EEEEEETTSCEEEEEEECT
T ss_pred             cCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEec-CCCCceEEEEECCCCC-EEEEEeCCCeEEEeccccC
Confidence            7778999999999999999999999999999877533  3443 45   99999999998 8999999999999997542


Q ss_pred             Cc--------------ceeeecC-CCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccc
Q 019059          242 KA--------------PIQELPG-HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSL  306 (346)
Q Consensus       242 ~~--------------~~~~~~~-~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  306 (346)
                      ..              ++..+.+ |...|.+++|+|++ ..|++++.|+.|++|+..........          .....
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~~~~----------~~~~~  295 (345)
T 3fm0_A          227 GNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLT-GALATACGDDAIRVFQEDPNSDPQQP----------TFSLT  295 (345)
T ss_dssp             TCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTT-CCEEEEETTSCEEEEEECTTSCTTSC----------CEEEE
T ss_pred             CCCccceeeccCCccceeEEecCCCCCcEEEEEEecCC-CEEEEEeCCCeEEEEEeCCCCCccee----------eEEEE
Confidence            21              1233444 88899999999999 89999999999999998762111000          00011


Q ss_pred             ccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          307 LNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       307 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      .....+|...|++++|+|+++.+|++++.||+|++|++.
T Consensus       296 ~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~  334 (345)
T 3fm0_A          296 AHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQ  334 (345)
T ss_dssp             EEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEEC
T ss_pred             eeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEec
Confidence            233468999999999999986699999999999999985

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=7.7e-43  Score=291.57  Aligned_cols=286  Identities=17%  Similarity=0.237  Sum_probs=241.6

Q ss_pred             ccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcc
Q 019059           12 LKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESY   91 (346)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~   91 (346)
                      +..+...|.++.++|++..++.|.    .++.+.+|++...   .....+..|..+|.+++|+|+++.|+++    +.|+
T Consensus         9 ~~~h~~~V~~~~fsp~~~~l~s~~----~dg~v~lWd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~----s~d~   77 (304)
T 2ynn_A            9 FSNRSDRVKGIDFHPTEPWVLTTL----YSGRVELWNYETQ---VEVRSIQVTETPVRAGKFIARKNWIIVG----SDDF   77 (304)
T ss_dssp             EEEECSCEEEEEECSSSSEEEEEE----TTSEEEEEETTTT---EEEEEEECCSSCEEEEEEEGGGTEEEEE----ETTS
T ss_pred             ecCCCCceEEEEECCCCCEEEEEc----CCCcEEEEECCCC---ceeEEeeccCCcEEEEEEeCCCCEEEEE----CCCC
Confidence            444566788899999999998874    6789999988664   2346677899999999999999988885    6899


Q ss_pred             eEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceee
Q 019059           92 GAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYL  171 (346)
Q Consensus        92 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v  171 (346)
                      .|++||+.         +.+.+..+.+|...|.+++|+|+++. +++++.|+.|++||++++....    ....+|...|
T Consensus        78 ~i~vwd~~---------~~~~~~~~~~h~~~v~~~~~~~~~~~-l~sgs~D~~v~lWd~~~~~~~~----~~~~~h~~~v  143 (304)
T 2ynn_A           78 RIRVFNYN---------TGEKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNWENNWALE----QTFEGHEHFV  143 (304)
T ss_dssp             EEEEEETT---------TCCEEEEEECCSSCEEEEEECSSSSE-EEEEETTSCEEEEEGGGTTEEE----EEECCCCSCE
T ss_pred             EEEEEECC---------CCcEEEEEeCCCCcEEEEEEcCCCCE-EEEECCCCeEEEEECCCCcchh----hhhcccCCcE
Confidence            99999998         67888899999999999999999984 7777899999999998653222    2234577799


Q ss_pred             EEEEeCC-CCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCC--CCCcEEEEecCCCeEEEEEcccCCcce
Q 019059          172 SGGAWDP-HDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDT--KKKHLLVTAADESGIHLWDLRMLKAPI  245 (346)
Q Consensus       172 ~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~  245 (346)
                      .+++|+| ++..+++++.|+.|++||++++.....+...+   +..++|+|  ++. ++++++.|+.|++||+++ ..++
T Consensus       144 ~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~D~~i~iWd~~~-~~~~  221 (304)
T 2ynn_A          144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP-YMITASDDLTIKIWDYQT-KSCV  221 (304)
T ss_dssp             EEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCC-EEEEEETTSEEEEEETTT-TEEE
T ss_pred             EEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCC-EEEEEcCCCeEEEEeCCC-Cccc
Confidence            9999999 56789999999999999999888776665444   88899887  565 899999999999999997 6688


Q ss_pred             eeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCC
Q 019059          246 QELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSR  325 (346)
Q Consensus       246 ~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  325 (346)
                      ..+.+|...|.+++|+|++ .+|++++.|++|++||+++                   ++++..+..|...+++++|+|+
T Consensus       222 ~~~~~h~~~v~~~~~~p~~-~~l~s~s~Dg~i~iWd~~~-------------------~~~~~~~~~~~~~~~~~~~~~~  281 (304)
T 2ynn_A          222 ATLEGHMSNVSFAVFHPTL-PIIISGSEDGTLKIWNSST-------------------YKVEKTLNVGLERSWCIATHPT  281 (304)
T ss_dssp             EEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTT-------------------CCEEEEECCSSSSEEEEEECTT
T ss_pred             eeeCCCCCCEEEEEECCCC-CEEEEEcCCCeEEEEECCC-------------------CceeeeccCCCccEEEEEECCC
Confidence            9999999999999999999 8999999999999999998                   8888999999999999999998


Q ss_pred             CCcE-EEEeecCCeEEEeeec
Q 019059          326 EPWI-FASLSYDGRVRNHMLE  345 (346)
Q Consensus       326 ~~~~-l~s~~~d~~v~vw~~~  345 (346)
                      ++.. +++++ |..+.+|++.
T Consensus       282 ~~~~~~asg~-~~g~~~~~~~  301 (304)
T 2ynn_A          282 GRKNYIASGF-DNGFTVLSLG  301 (304)
T ss_dssp             CGGGCEEEEE-TTEEEEEECC
T ss_pred             CCceEEEEec-CCceEEEEec
Confidence            8544 66665 5557777764

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.7e-43  Score=303.53  Aligned_cols=301  Identities=12%  Similarity=0.200  Sum_probs=243.6

Q ss_pred             eecccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecC
Q 019059            9 GYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTG   88 (346)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~   88 (346)
                      ...+..+...|.++.+++++..++.|+    .++.+.+|++....   ....+..|...|.+++|+|+++.+++    ++
T Consensus        59 ~~~l~gH~~~V~~~~~sp~~~~l~s~s----~D~~v~iWd~~~~~---~~~~~~~h~~~v~~~~~s~~g~~las----~~  127 (380)
T 3iz6_a           59 CRTLQGHSGKVYSLDWTPEKNWIVSAS----QDGRLIVWNALTSQ---KTHAIKLHCPWVMECAFAPNGQSVAC----GG  127 (380)
T ss_dssp             EEEECCCSSCEEEEEECTTSSCEEEEE----TTSEEEEEETTTTE---EEEEEECCCTTCCCCEECTTSSEEEE----CC
T ss_pred             eecccccccEEEEEEEcCCCCEEEEEe----CCCeEEEEECCCCc---cceEEecCCCCEEEEEECCCCCEEEE----ee
Confidence            344555667888899999998888874    68899999876642   33566789999999999999988877    58


Q ss_pred             CcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCc
Q 019059           89 ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGML  168 (346)
Q Consensus        89 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  168 (346)
                      .|+.+++|++......  .........+.+|.+.|.++.|+|++...+++++.|+.|++||+.+++....+......+|.
T Consensus       128 ~d~~v~iw~~~~~~~~--~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~  205 (380)
T 3iz6_a          128 LDSACSIFNLSSQADR--DGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHT  205 (380)
T ss_dssp             SSSCCEEEECCCCSSC--CCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCC
T ss_pred             CCCcEEEEECCCCccc--cCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCc
Confidence            9999999998732111  11233455678999999999999987666888899999999999987654444333345678


Q ss_pred             eeeEEEEeCC-CCCcEEEEecCCeEEEEEccCC-Cccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCc
Q 019059          169 HYLSGGAWDP-HDVNAVAATCESSVQFWDLRSM-GKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA  243 (346)
Q Consensus       169 ~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  243 (346)
                      ..+.+++|++ ++..+++++.|+.|++||++.. +.+..+. +|   |.+++|+|++. .|++++.|++|++||+++ ..
T Consensus       206 ~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~-~h~~~v~~v~~~p~~~-~l~s~s~D~~i~lwd~~~-~~  282 (380)
T 3iz6_a          206 ADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYH-GHEGDINSVKFFPDGQ-RFGTGSDDGTCRLFDMRT-GH  282 (380)
T ss_dssp             SCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEEC-CCSSCCCEEEECTTSS-EEEEECSSSCEEEEETTT-TE
T ss_pred             cCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEEC-CcCCCeEEEEEecCCC-eEEEEcCCCeEEEEECCC-Cc
Confidence            8999999987 7788999999999999999854 5555554 55   99999999998 899999999999999997 44


Q ss_pred             ceeeecCCC-------cceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccc----cc
Q 019059          244 PIQELPGHT-------HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSY----SD  312 (346)
Q Consensus       244 ~~~~~~~~~-------~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  312 (346)
                      ++..+..+.       ..|++++|+|++ .+|++|+.||.|++||+..                   ++.+..+    .+
T Consensus       283 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~vwd~~~-------------------~~~~~~~~~~~~~  342 (380)
T 3iz6_a          283 QLQVYNREPDRNDNELPIVTSVAFSISG-RLLFAGYSNGDCYVWDTLL-------------------AEMVLNLGTLQNS  342 (380)
T ss_dssp             EEEEECCCCSSSCCSSCSCSEEEECSSS-SEEEEECTTSCEEEEETTT-------------------CCEEEEECCSCSS
T ss_pred             EEEEecccccccccccCceEEEEECCCC-CEEEEEECCCCEEEEECCC-------------------CceEEEEecccCC
Confidence            566554432       348999999999 9999999999999999987                   5555444    67


Q ss_pred             ccceeeEEEeCCCCCcEEEEeecCCeEEEeeecC
Q 019059          313 YEDSVYGLAWSSREPWIFASLSYDGRVRNHMLEK  346 (346)
Q Consensus       313 ~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~~  346 (346)
                      |.+.|++++|+|++. +|++++.|++|++|++.+
T Consensus       343 h~~~v~~l~~s~dg~-~l~sgs~D~~i~iW~~~~  375 (380)
T 3iz6_a          343 HEGRISCLGLSSDGS-ALCTGSWDKNLKIWAFSG  375 (380)
T ss_dssp             CCCCCCEEEECSSSS-EEEEECTTSCEEEEECCS
T ss_pred             CCCceEEEEECCCCC-EEEEeeCCCCEEEEecCC
Confidence            999999999999997 899999999999999864

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=9.9e-43  Score=292.86  Aligned_cols=262  Identities=16%  Similarity=0.215  Sum_probs=215.2

Q ss_pred             EEEEEecCCCCeEEEeeeeccccceEEeeecCC----CCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeecc
Q 019059           44 VHLLRLSSGGTELICEGLFSHPNEIWDLSSCPF----DQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH  119 (346)
Q Consensus        44 i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~  119 (346)
                      +++.........+......+|.+.|++++|+|+    +..|++    ++.|++|+||++..       ........+.+|
T Consensus        11 ~~~~~~~~~~~g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~t----gs~D~~v~vW~~~~-------~~~~~~~~l~gh   79 (321)
T 3ow8_A           11 ENLYFQGTNQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVT----GSLDDLVKVWKWRD-------ERLDLQWSLEGH   79 (321)
T ss_dssp             ----------CEEEEEETTSSSSCEEEEEEC-------CEEEE----EETTSCEEEEEEET-------TEEEEEEEECCC
T ss_pred             hhHHHhhhhhhhheeeecccCCCcEEEEEEecCCCCCCCEEEE----EcCCCCEEEEECCC-------CCeeeeeeeccC
Confidence            333333333344555777899999999999985    345555    47999999999872       233445578899


Q ss_pred             CCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccC
Q 019059          120 VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRS  199 (346)
Q Consensus       120 ~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~  199 (346)
                      ...|.+++|++++. ++++++.|+.|++||+.+++....+.     .+...+.+++|+|+++.+++++.|+.|++||+++
T Consensus        80 ~~~v~~~~~~~~~~-~l~s~s~D~~i~lWd~~~~~~~~~~~-----~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~  153 (321)
T 3ow8_A           80 QLGVVSVDISHTLP-IAASSSLDAHIRLWDLENGKQIKSID-----AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVES  153 (321)
T ss_dssp             SSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEEEE-----CCTTCCCCEEECTTSSEEEEECTTSEEEEEETTT
T ss_pred             CCCEEEEEECCCCC-EEEEEeCCCcEEEEECCCCCEEEEEe-----CCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCC
Confidence            99999999999998 47777889999999998765433332     2344788999999999999999999999999999


Q ss_pred             CCccceeeccc--eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeE
Q 019059          200 MGKTNSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTV  277 (346)
Q Consensus       200 ~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i  277 (346)
                      ++....+....  +.+++|+|+++ +|++++.|+.|++||+++ .+++..+.+|..+|.+++|+|++ .+|++++.|+.|
T Consensus       154 ~~~~~~~~~~~~~v~~~~~spdg~-~lasg~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~spd~-~~l~s~s~dg~i  230 (321)
T 3ow8_A          154 GKKEYSLDTRGKFILSIAYSPDGK-YLASGAIDGIINIFDIAT-GKLLHTLEGHAMPIRSLTFSPDS-QLLVTASDDGYI  230 (321)
T ss_dssp             CSEEEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTT-TEEEEEECCCSSCCCEEEECTTS-CEEEEECTTSCE
T ss_pred             CceeEEecCCCceEEEEEECCCCC-EEEEEcCCCeEEEEECCC-CcEEEEEcccCCceeEEEEcCCC-CEEEEEcCCCeE
Confidence            98877766332  99999999998 899999999999999997 56788899999999999999999 999999999999


Q ss_pred             EEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          278 NLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       278 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      ++||++.                   .++...+.+|...|.+++|+|+++ +|++++.|++|++||+.
T Consensus       231 ~iwd~~~-------------------~~~~~~~~~h~~~v~~~~~sp~~~-~l~s~s~D~~v~iwd~~  278 (321)
T 3ow8_A          231 KIYDVQH-------------------ANLAGTLSGHASWVLNVAFCPDDT-HFVSSSSDKSVKVWDVG  278 (321)
T ss_dssp             EEEETTT-------------------CCEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETT
T ss_pred             EEEECCC-------------------cceeEEEcCCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCC
Confidence            9999998                   788888999999999999999997 89999999999999985

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.3e-41  Score=290.10  Aligned_cols=289  Identities=16%  Similarity=0.182  Sum_probs=238.7

Q ss_pred             cccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCc
Q 019059           11 GLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGES   90 (346)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d   90 (346)
                      .++.+...|.++.+++++.+++.|.    .++.+.+|+......   ...+..|...|.+++|+|++..++++    +.|
T Consensus        59 ~l~gH~~~V~~~~~s~d~~~l~s~s----~Dg~v~vWd~~~~~~---~~~~~~~~~~v~~~~~sp~g~~lasg----~~d  127 (354)
T 2pbi_B           59 TLKGHGNKVLCMDWCKDKRRIVSSS----QDGKVIVWDSFTTNK---EHAVTMPCTWVMACAYAPSGCAIACG----GLD  127 (354)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEE----TTSEEEEEETTTCCE---EEEEECSSSCCCEEEECTTSSEEEEE----STT
T ss_pred             EecCCCCeEEEEEECCCCCEEEEEe----CCCeEEEEECCCCCc---ceEEecCCCCEEEEEECCCCCEEEEe----eCC
Confidence            3444566788888999998888874    689999998776532   34455688999999999999888874    799


Q ss_pred             ceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCcee
Q 019059           91 YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHY  170 (346)
Q Consensus        91 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  170 (346)
                      +.+++|++.....   .........+..|...|.+++|+|++.. +++++.|+.|++||+++++....+     .+|...
T Consensus       128 ~~i~v~~~~~~~~---~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~t~s~D~~v~lwd~~~~~~~~~~-----~~h~~~  198 (354)
T 2pbi_B          128 NKCSVYPLTFDKN---ENMAAKKKSVAMHTNYLSACSFTNSDMQ-ILTASGDGTCALWDVESGQLLQSF-----HGHGAD  198 (354)
T ss_dssp             SEEEEEECCCCTT---CCSGGGCEEEEECSSCEEEEEECSSSSE-EEEEETTSEEEEEETTTCCEEEEE-----ECCSSC
T ss_pred             CCEEEEEEecccc---ccccccceeeeccCCcEEEEEEeCCCCE-EEEEeCCCcEEEEeCCCCeEEEEE-----cCCCCC
Confidence            9999999863211   1122445567789999999999999984 777788999999999876543332     346668


Q ss_pred             eEEEEeCC--CCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcce
Q 019059          171 LSGGAWDP--HDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPI  245 (346)
Q Consensus       171 v~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  245 (346)
                      +.+++|+|  ++..+++++.|+.|++||+++++++..+. .|   |++++|+|++. .|++++.|++|++||++. ...+
T Consensus       199 v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~-~h~~~v~~v~~~p~~~-~l~s~s~D~~v~lwd~~~-~~~~  275 (354)
T 2pbi_B          199 VLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFE-THESDVNSVRYYPSGD-AFASGSDDATCRLYDLRA-DREV  275 (354)
T ss_dssp             EEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTT-TEEE
T ss_pred             eEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCCeEEEEEeCCCC-EEEEEeCCCeEEEEECCC-CcEE
Confidence            99999987  46789999999999999999999887776 44   99999999998 899999999999999987 4345


Q ss_pred             eeecC--CCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeC
Q 019059          246 QELPG--HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWS  323 (346)
Q Consensus       246 ~~~~~--~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  323 (346)
                      ..+..  +...+.+++|+|++ .+|++++.|+.|++||+.+                   ++.+..+.+|...|++++|+
T Consensus       276 ~~~~~~~~~~~~~~~~~s~~g-~~l~~g~~d~~i~vwd~~~-------------------~~~~~~l~~h~~~v~~l~~s  335 (354)
T 2pbi_B          276 AIYSKESIIFGASSVDFSLSG-RLLFAGYNDYTINVWDVLK-------------------GSRVSILFGHENRVSTLRVS  335 (354)
T ss_dssp             EEECCTTCCSCEEEEEECTTS-SEEEEEETTSCEEEEETTT-------------------CSEEEEECCCSSCEEEEEEC
T ss_pred             EEEcCCCcccceeEEEEeCCC-CEEEEEECCCcEEEEECCC-------------------CceEEEEECCCCcEEEEEEC
Confidence            55543  33578999999999 9999999999999999988                   78888899999999999999


Q ss_pred             CCCCcEEEEeecCCeEEEee
Q 019059          324 SREPWIFASLSYDGRVRNHM  343 (346)
Q Consensus       324 ~~~~~~l~s~~~d~~v~vw~  343 (346)
                      |+++ +|++++.|++|++|+
T Consensus       336 pdg~-~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          336 PDGT-AFCSGSWDHTLRVWA  354 (354)
T ss_dssp             TTSS-CEEEEETTSEEEEEC
T ss_pred             CCCC-EEEEEcCCCCEEecC
Confidence            9997 899999999999996

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.1e-42  Score=300.75  Aligned_cols=244  Identities=20%  Similarity=0.291  Sum_probs=219.0

Q ss_pred             eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEE
Q 019059           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV  138 (346)
Q Consensus        59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  138 (346)
                      ..+.+|.++|++++|+|+++.++++    +.|+.|++||+.         +++....+.+|...|.+++|+|+++ ++++
T Consensus       102 ~~l~gh~~~V~~~~~~p~~~~l~s~----s~Dg~i~vwd~~---------~~~~~~~l~~h~~~V~~v~~~~~~~-~l~s  167 (410)
T 1vyh_C          102 YALSGHRSPVTRVIFHPVFSVMVSA----SEDATIKVWDYE---------TGDFERTLKGHTDSVQDISFDHSGK-LLAS  167 (410)
T ss_dssp             CEEECCSSCEEEEEECSSSSEEEEE----ESSSCEEEEETT---------TCCCCEEECCCSSCEEEEEECTTSS-EEEE
T ss_pred             EeecccCCcEEEEEEcCCCCEEEEE----eCCCeEEEEECC---------CCcEEEEEeccCCcEEEEEEcCCCC-EEEE
Confidence            4567899999999999999888885    699999999998         6778888999999999999999998 4777


Q ss_pred             EecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEE
Q 019059          139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVD  215 (346)
Q Consensus       139 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~  215 (346)
                      ++.|+.|++||+.+.+..     ....+|...|.+++|+|++..+++++.|+.|++||++++.++..+. +|   +.++.
T Consensus       168 gs~D~~i~iwd~~~~~~~-----~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~-~h~~~v~~~~  241 (410)
T 1vyh_C          168 CSADMTIKLWDFQGFECI-----RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT-GHREWVRMVR  241 (410)
T ss_dssp             EETTSCCCEEETTSSCEE-----ECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEE
T ss_pred             EeCCCeEEEEeCCCCcee-----EEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe-CCCccEEEEE
Confidence            789999999999865432     2234577799999999999999999999999999999999888876 55   99999


Q ss_pred             eCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCC--------------------CCcEEEEecCCC
Q 019059          216 YDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPE--------------------YDGFILSAGTDS  275 (346)
Q Consensus       216 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~--------------------~~~~l~s~~~d~  275 (346)
                      |+|++. ++++++.|+.|++||+++ ......+..|...|.+++|+|+                    + .+|++|+.|+
T Consensus       242 ~~~~g~-~l~s~s~D~~v~vwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~l~sgs~D~  318 (410)
T 1vyh_C          242 PNQDGT-LIASCSNDQTVRVWVVAT-KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPG-PFLLSGSRDK  318 (410)
T ss_dssp             ECTTSS-EEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------C-CEEEEEETTS
T ss_pred             ECCCCC-EEEEEcCCCeEEEEECCC-CceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCC-CEEEEEeCCC
Confidence            999998 999999999999999987 5578889999999999999996                    4 6899999999


Q ss_pred             eEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          276 TVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       276 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      .|++||+++                   +.++..+.+|...|++++|+|+++ +|++++.|+.|++||+.
T Consensus       319 ~i~iwd~~~-------------------~~~~~~~~~h~~~v~~v~~~~~g~-~l~s~s~D~~i~vwd~~  368 (410)
T 1vyh_C          319 TIKMWDVST-------------------GMCLMTLVGHDNWVRGVLFHSGGK-FILSCADDKTLRVWDYK  368 (410)
T ss_dssp             EEEEEETTT-------------------TEEEEEEECCSSCEEEEEECSSSS-CEEEEETTTEEEEECCT
T ss_pred             eEEEEECCC-------------------CceEEEEECCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECC
Confidence            999999998                   888999999999999999999997 89999999999999975

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2e-41  Score=284.16  Aligned_cols=290  Identities=15%  Similarity=0.258  Sum_probs=243.8

Q ss_pred             eeeecccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEee
Q 019059            7 GIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFS   86 (346)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~   86 (346)
                      .+.+.+..+...+..+.+++++..++.|.    .++.+.+|++....   ....+.+|...|.+++|+|+++.|+++   
T Consensus        14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~----~dg~i~iw~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~s~---   83 (312)
T 4ery_A           14 ALKFTLAGHTKAVSSVKFSPNGEWLASSS----ADKLIKIWGAYDGK---FEKTISGHKLGISDVAWSSDSNLLVSA---   83 (312)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEE----TTSCEEEEETTTCC---EEEEECCCSSCEEEEEECTTSSEEEEE---
T ss_pred             eeEEEEcccCCcEEEEEECCCCCEEEEee----CCCeEEEEeCCCcc---cchhhccCCCceEEEEEcCCCCEEEEE---
Confidence            34455666677888899999998888874    67899999886643   335667899999999999999888885   


Q ss_pred             cCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCC
Q 019059           87 TGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG  166 (346)
Q Consensus        87 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~  166 (346)
                       +.|+.|++||++         ..+.+..+..|...|.+++|+|+++. +++++.|+.|++||+++++....+     ..
T Consensus        84 -~~d~~i~vwd~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~-----~~  147 (312)
T 4ery_A           84 -SDDKTLKIWDVS---------SGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVRIWDVKTGKCLKTL-----PA  147 (312)
T ss_dssp             -ETTSEEEEEETT---------TCCEEEEEECCSSCEEEEEECSSSSE-EEEEETTSCEEEEETTTCCEEEEE-----CC
T ss_pred             -CCCCEEEEEECC---------CCcEEEEEcCCCCCEEEEEEcCCCCE-EEEEeCCCcEEEEECCCCEEEEEe-----cC
Confidence             689999999998         67788889999999999999999984 777788999999999876533222     34


Q ss_pred             CceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCc
Q 019059          167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA  243 (346)
Q Consensus       167 ~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  243 (346)
                      |...+.+++|+|+++.+++++.|+.|++||+++++.+..+...+   +..++|+|+++ .+++++.|+.|++||+++ ..
T Consensus       148 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~-~~  225 (312)
T 4ery_A          148 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK-YILAATLDNTLKLWDYSK-GK  225 (312)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSS-EEEEEETTTEEEEEETTT-TE
T ss_pred             CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCC-EEEEEcCCCeEEEEECCC-Cc
Confidence            56689999999999999999999999999999998877665333   99999999998 899999999999999997 55


Q ss_pred             ceeeecCCCcceEE--EEeC-CCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEE
Q 019059          244 PIQELPGHTHWTWA--VCCN-PEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGL  320 (346)
Q Consensus       244 ~~~~~~~~~~~v~~--v~~~-~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  320 (346)
                      .+..+.+|.....+  ..++ +++ .+|++|+.|+.|++||+++                   ++.+..+.+|...|.++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~-~~l~sg~~dg~i~vwd~~~-------------------~~~~~~~~~h~~~v~~~  285 (312)
T 4ery_A          226 CLKTYTGHKNEKYCIFANFSVTGG-KWIVSGSEDNLVYIWNLQT-------------------KEIVQKLQGHTDVVIST  285 (312)
T ss_dssp             EEEEECSSCCSSSCCCEEEECSSS-CEEEECCTTSCEEEEETTT-------------------CCEEEEECCCSSCEEEE
T ss_pred             EEEEEEecCCceEEEEEEEEeCCC-cEEEEECCCCEEEEEECCC-------------------chhhhhhhccCCcEEEE
Confidence            77888888765433  2344 556 8999999999999999998                   78889999999999999


Q ss_pred             EeCCCCCcEEEEee--cCCeEEEeeec
Q 019059          321 AWSSREPWIFASLS--YDGRVRNHMLE  345 (346)
Q Consensus       321 ~~~~~~~~~l~s~~--~d~~v~vw~~~  345 (346)
                      +|+|+++ ++++++  .|+.|++|+.+
T Consensus       286 ~~~p~~~-~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          286 ACHPTEN-IIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             EECSSSS-EEEEEECTTTCCEEEEECC
T ss_pred             eecCcCC-ceEEEEccCCccEEEecCC
Confidence            9999997 888886  69999999875

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1e-41  Score=298.36  Aligned_cols=326  Identities=19%  Similarity=0.323  Sum_probs=247.7

Q ss_pred             cccceeeEeeeccCCC-------CcceEEEeecccCCCCeEEEEEec------------------------CCCCeEEEe
Q 019059           11 GLKYQARCISDVKADT-------DHTSFLTGTLSLKEENEVHLLRLS------------------------SGGTELICE   59 (346)
Q Consensus        11 ~~~~~~~~~~~~~~~~-------~~~~~~~g~~~~~~~~~i~~~~~~------------------------~~~~~~~~~   59 (346)
                      .+++++-++.++....       ..+++++|+++....+.|+++++.                        ...+.+...
T Consensus        43 ~l~wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  122 (430)
T 2xyi_A           43 ALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIE  122 (430)
T ss_dssp             ECSSCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEE
T ss_pred             CCCCCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEE
Confidence            4555554444444221       137899999988878899998765                        112244556


Q ss_pred             eeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCC-CCccceeeeeeeccCCceEEEEeecCCCCcEEE
Q 019059           60 GLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQL-NSPQLERIAALDAHVGKINCVLWWSSGRHDKLV  138 (346)
Q Consensus        60 ~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  138 (346)
                      ....|.+.|++++|+|++..++++   ++.++.|++|++....... ......++..+..|...|.+++|+|++..++++
T Consensus       123 ~~~~h~~~v~~l~~~p~~~~~lat---~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s  199 (430)
T 2xyi_A          123 IKINHEGEVNRARYMPQNACVIAT---KTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLS  199 (430)
T ss_dssp             EEEEESSCCSEEEEETTEEEEEEE---ECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEE
T ss_pred             EEEcCCCcEEEEEECCCCCcEEEE---ECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEE
Confidence            778899999999999985555555   4789999999997321110 011256777888999999999999999866888


Q ss_pred             EecCCeEEEEEcCCCCCCceee--ecccCCCceeeEEEEeCC-CCCcEEEEecCCeEEEEEccCC---Cccceeeccc--
Q 019059          139 SIDEENIFLWSLDCSNKNAQVQ--SKQSSGMLHYLSGGAWDP-HDVNAVAATCESSVQFWDLRSM---GKTNSIEHAH--  210 (346)
Q Consensus       139 ~~~d~~i~vwd~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~--  210 (346)
                      ++.||.|++|++.++.......  .....+|...|.+++|+| ++..+++++.|+.|++||++++   +....+. .|  
T Consensus       200 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~  278 (430)
T 2xyi_A          200 ASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD-AHTA  278 (430)
T ss_dssp             ECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE-CCSS
T ss_pred             EeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee-cCCC
Confidence            8889999999998744322211  112345777899999999 5666778889999999999987   3455554 44  


Q ss_pred             -eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCC
Q 019059          211 -VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDE  289 (346)
Q Consensus       211 -v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~  289 (346)
                       |++++|+|++++++++|+.||.|++||++....++..+..|...|.+++|+|+++.+|++++.|+.|+|||++......
T Consensus       279 ~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~  358 (430)
T 2xyi_A          279 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ  358 (430)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCC
T ss_pred             CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcccc
Confidence             9999999999878999999999999999986778899999999999999999996689999999999999998622111


Q ss_pred             CCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          290 LPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      .....     .....+++..+.+|...|++++|+|+++++|++++.|+.|++|++.
T Consensus       359 ~~~~~-----~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~  409 (430)
T 2xyi_A          359 STEDA-----EDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA  409 (430)
T ss_dssp             CHHHH-----HHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred             Ccccc-----ccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence            10000     0011356777888999999999999998799999999999999985

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-41  Score=286.93  Aligned_cols=301  Identities=17%  Similarity=0.266  Sum_probs=221.8

Q ss_pred             eeeecccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeee-ec-cccceEEeeecCCCCceEEEE
Q 019059            7 GIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGL-FS-HPNEIWDLSSCPFDQRIFSTV   84 (346)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~-h~~~v~~~~~~~~~~~l~~~~   84 (346)
                      .++..++.+...+.++.++++  .++.|    +.++.+.+|++........ ..+ .+ |.+.|.+++|+|+++.|+++ 
T Consensus         5 ~~~~~~~~h~~~v~~~~~s~~--~las~----~~D~~i~lw~~~~~~~~~~-~~~~~~~h~~~v~~v~~sp~~~~las~-   76 (330)
T 2hes_X            5 NLIKSLKLYKEKIWSFDFSQG--ILATG----STDRKIKLVSVKYDDFTLI-DVLDETAHKKAIRSVAWRPHTSLLAAG-   76 (330)
T ss_dssp             EEEEEEECCSSCEEEEEEETT--EEEEE----ESSSCEEEEECSSSCCEEE-EEECTTCCCSCEEEEEECTTSSEEEEE-
T ss_pred             ccceeeccCCCceeeeccCCC--EEEEE----cCCCEEEEEEecCCCeEEE-EEEecCCccCCEEEEEECCCCCEEEEE-
Confidence            445566666667777777766  66665    4678999999976533332 233 34 99999999999999888775 


Q ss_pred             eecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeeccc
Q 019059           85 FSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQS  164 (346)
Q Consensus        85 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~  164 (346)
                         +.|+.|++|+++....  .....+.+..+.+|...|.+++|+|++++ +++++.|+.|++||+.......... ...
T Consensus        77 ---s~D~~v~iw~~~~~~~--~~~~~~~~~~~~~h~~~V~~v~~sp~g~~-las~s~D~~v~iwd~~~~~~~~~~~-~~~  149 (330)
T 2hes_X           77 ---SFDSTVSIWAKEESAD--RTFEMDLLAIIEGHENEVKGVAWSNDGYY-LATCSRDKSVWIWETDESGEEYECI-SVL  149 (330)
T ss_dssp             ---ETTSCEEEEEC---------CCCEEEEEEC----CEEEEEECTTSCE-EEEEETTSCEEEEECCTTCCCCEEE-EEE
T ss_pred             ---eCCCcEEEEEcccCcC--ccccceeEEEEcCCCCcEEEEEECCCCCE-EEEEeCCCEEEEEeccCCCCCeEEE-EEe
Confidence               6899999999852110  01134567778899999999999999984 7777889999999995432222211 223


Q ss_pred             CCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCC--Cccceeeccc---eeEEEeCCC--CCcEEEEecCCCeEEEEE
Q 019059          165 SGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSM--GKTNSIEHAH---VRNVDYDTK--KKHLLVTAADESGIHLWD  237 (346)
Q Consensus       165 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~---v~~~~~~~~--~~~~l~~~~~dg~i~i~d  237 (346)
                      .+|...|.+++|+|++..|++++.|+.|++||.+++  +++..+. +|   |.+++|+|+  +. .+++++.|++|++||
T Consensus       150 ~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~-~l~s~s~D~~v~iw~  227 (330)
T 2hes_X          150 QEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLN-GHEGTVWSSDFDKTEGVF-RLCSGSDDSTVRVWK  227 (330)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCSSSSC-EEEEEETTSCEEEEE
T ss_pred             ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEcc-CCCCcEEEEEecCCCCee-EEEEEeCCCeEEEEE
Confidence            457779999999999999999999999999999876  4555554 55   999999998  54 799999999999999


Q ss_pred             cccCC-------cceeeecC-CCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccc--ccc
Q 019059          238 LRMLK-------APIQELPG-HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRAN--SLL  307 (346)
Q Consensus       238 ~~~~~-------~~~~~~~~-~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~  307 (346)
                      ++...       .....+.. |...|.+++|++++  +|++++.|+.|+|||...                   +  +..
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~--~l~s~~~dg~v~iw~~~~-------------------~~~~~~  286 (330)
T 2hes_X          228 YMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG--LIASVGADGVLAVYEEVD-------------------GEWKVF  286 (330)
T ss_dssp             EEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS--CEEEEETTSCEEEEEEET-------------------TEEEEE
T ss_pred             ecCCCccccceeEEeeecccccccceEEEEEcCCC--EEEEEeCCCEEEEEEcCC-------------------CceEEE
Confidence            97531       23344444 89999999999654  799999999999999876                   3  222


Q ss_pred             -cccccccc-eeeEEEeCC--CCCcEEEEeecCCeEEEeeecC
Q 019059          308 -NSYSDYED-SVYGLAWSS--REPWIFASLSYDGRVRNHMLEK  346 (346)
Q Consensus       308 -~~~~~~~~-~v~~~~~~~--~~~~~l~s~~~d~~v~vw~~~~  346 (346)
                       ....+|.. .|.+++|+|  ++. +|++++.|+.|++|++++
T Consensus       287 ~~~~~~h~~~~v~~v~~~~~~~~~-~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          287 AKRALCHGVYEINVVKWLELNGKT-ILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EEESCTTTTSCEEEEEEC-----C-CEEEEETTSEEEEEEC--
T ss_pred             eccccccccceEEEEEEecCCCce-EEEEecCCCcEEEEEecc
Confidence             23456776 899999999  565 899999999999999863

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=8.6e-41  Score=284.00  Aligned_cols=301  Identities=16%  Similarity=0.255  Sum_probs=227.4

Q ss_pred             cccceeeEeeeccC-----CC-CcceEEEeecccCCCCeEEEEEecCCC----CeEEEeeeeccccceEEeeecCCCCce
Q 019059           11 GLKYQARCISDVKA-----DT-DHTSFLTGTLSLKEENEVHLLRLSSGG----TELICEGLFSHPNEIWDLSSCPFDQRI   80 (346)
Q Consensus        11 ~~~~~~~~~~~~~~-----~~-~~~~~~~g~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~h~~~v~~~~~~~~~~~l   80 (346)
                      .++.+...|.++.+     .+ ++..++.|.    .++.|++|++....    .......+.+|...|.+++|+|++..+
T Consensus        16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs----~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l   91 (343)
T 2xzm_R           16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGS----RDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA   91 (343)
T ss_dssp             EEECCSSCEEEEEECCCSSTTCCCCEEEEEE----TTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE
T ss_pred             eeccchhhhhheeeEEEeecCCCCCEEEEEc----CCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE
Confidence            34445556666655     44 667777764    67899999997643    123446678999999999999999888


Q ss_pred             EEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceee
Q 019059           81 FSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQ  160 (346)
Q Consensus        81 ~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~  160 (346)
                      +++    +.|++|++||+.         +.+.+..+.+|...|.+++|+|+++. +++++.|+.|++||+...   ....
T Consensus        92 ~s~----s~D~~v~lwd~~---------~~~~~~~~~~h~~~v~~v~~sp~~~~-l~s~~~d~~i~~wd~~~~---~~~~  154 (343)
T 2xzm_R           92 ISS----SWDKTLRLWDLR---------TGTTYKRFVGHQSEVYSVAFSPDNRQ-ILSAGAEREIKLWNILGE---CKFS  154 (343)
T ss_dssp             EEE----ETTSEEEEEETT---------SSCEEEEEECCCSCEEEEEECSSTTE-EEEEETTSCEEEEESSSC---EEEE
T ss_pred             EEE----cCCCcEEEEECC---------CCcEEEEEcCCCCcEEEEEECCCCCE-EEEEcCCCEEEEEeccCC---ceee
Confidence            875    699999999998         67788889999999999999999984 777788999999999732   1122


Q ss_pred             ecccCCCceeeEEEEeCCCC----------CcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEe
Q 019059          161 SKQSSGMLHYLSGGAWDPHD----------VNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTA  227 (346)
Q Consensus       161 ~~~~~~~~~~v~~~~~~~~~----------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~  227 (346)
                      ......|...+.+++|+|++          ..+++++.|+.|++||.. .+....+. +|   |.+++|+|++. +|++|
T Consensus       155 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~-~h~~~v~~~~~s~~g~-~l~sg  231 (343)
T 2xzm_R          155 SAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFK-AHESNVNHLSISPNGK-YIATG  231 (343)
T ss_dssp             CCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEEEEE-CCSSCEEEEEECTTSS-EEEEE
T ss_pred             eecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeEEEc-CccccceEEEECCCCC-EEEEE
Confidence            22233577789999999987          679999999999999943 44444444 44   99999999998 89999


Q ss_pred             cCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccc
Q 019059          228 ADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLL  307 (346)
Q Consensus       228 ~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (346)
                      +.|+.|++||++....+...+. +...|.+++|+|++ .+++++ .|+.|++||+.+......  ......    .....
T Consensus       232 s~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~-~~la~~-~d~~v~iw~~~~~~~~~~--~~~~~~----~~~~~  302 (343)
T 2xzm_R          232 GKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKL-QWVAVG-TDQGVKIFNLMTQSKAPV--CTIEAE----PITKA  302 (343)
T ss_dssp             ETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSS-CEEEEE-ESSCEEEEESSSCCSCSE--EECCCC----SGGGB
T ss_pred             cCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCC-CEEEEE-CCCCEEEEEeCCCCCCce--EEeecC----cchhh
Confidence            9999999999965454555543 55679999999998 777655 578899999986221100  000000    00111


Q ss_pred             cccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          308 NSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       308 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      ....+|...|.+++|+|+++ +|++++.||.|++|+++
T Consensus       303 ~~~~~~~~~v~~~~~sp~g~-~l~sg~~Dg~v~~w~~~  339 (343)
T 2xzm_R          303 EGQKGKNPQCTSLAWNALGK-KLFAGFTDGVIRTFSFE  339 (343)
T ss_dssp             TTBCCSCCCEEEEEECSSSC-CEEEEETTSEEEEEEEE
T ss_pred             hhhcCCCCceEEEEECCCCC-eEEEecCCceEEEEEEE
Confidence            22346888899999999997 89999999999999985

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.3e-41  Score=292.77  Aligned_cols=280  Identities=19%  Similarity=0.278  Sum_probs=229.3

Q ss_pred             eeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeecc------------------ccceEEeeecCCC
Q 019059           16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSH------------------PNEIWDLSSCPFD   77 (346)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h------------------~~~v~~~~~~~~~   77 (346)
                      ...+..+.+++++..++.|.     ++.+.+|++......   ..+..|                  ...|.+++|+|++
T Consensus        64 ~~~V~~v~fspdg~~la~g~-----~~~v~i~~~~~g~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg  135 (393)
T 1erj_A           64 TSVVCCVKFSNDGEYLATGC-----NKTTQVYRVSDGSLV---ARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG  135 (393)
T ss_dssp             SSCCCEEEECTTSSEEEEEC-----BSCEEEEETTTCCEE---EEECC-----------------CCCCBEEEEEECTTS
T ss_pred             CCEEEEEEECCCCCEEEEEc-----CCcEEEEEecCCCEE---EEecCccccccccccccccccCCCceeEEEEEECCCC
Confidence            34566778899998888764     357888887654321   222222                  2359999999999


Q ss_pred             CceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCc
Q 019059           78 QRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNA  157 (346)
Q Consensus        78 ~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~  157 (346)
                      +.|+++    +.|+.|++||+.         ..+.+..+.+|...|.+++|+|+++. +++++.|+.|++||+.+++...
T Consensus       136 ~~l~s~----~~d~~i~iwd~~---------~~~~~~~~~~h~~~v~~~~~~p~~~~-l~s~s~d~~v~iwd~~~~~~~~  201 (393)
T 1erj_A          136 KFLATG----AEDRLIRIWDIE---------NRKIVMILQGHEQDIYSLDYFPSGDK-LVSGSGDRTVRIWDLRTGQCSL  201 (393)
T ss_dssp             SEEEEE----ETTSCEEEEETT---------TTEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTTEEEE
T ss_pred             CEEEEE----cCCCeEEEEECC---------CCcEEEEEccCCCCEEEEEEcCCCCE-EEEecCCCcEEEEECCCCeeEE
Confidence            988885    689999999998         67788889999999999999999984 7777889999999998765333


Q ss_pred             eeeecccCCCceeeEEEEeCC-CCCcEEEEecCCeEEEEEccCCCccceee------ccc---eeEEEeCCCCCcEEEEe
Q 019059          158 QVQSKQSSGMLHYLSGGAWDP-HDVNAVAATCESSVQFWDLRSMGKTNSIE------HAH---VRNVDYDTKKKHLLVTA  227 (346)
Q Consensus       158 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~------~~~---v~~~~~~~~~~~~l~~~  227 (346)
                      .+.      +...+..++|+| ++..+++++.|+.|++||+++++.+..+.      .+|   |.+++|+|++. +|+++
T Consensus       202 ~~~------~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~l~s~  274 (393)
T 1erj_A          202 TLS------IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ-SVVSG  274 (393)
T ss_dssp             EEE------CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSS-EEEEE
T ss_pred             EEE------cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCC-EEEEE
Confidence            222      233789999999 88999999999999999999988766552      234   99999999998 89999


Q ss_pred             cCCCeEEEEEcccCC-----------cceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCccccc
Q 019059          228 ADESGIHLWDLRMLK-----------APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLV  296 (346)
Q Consensus       228 ~~dg~i~i~d~~~~~-----------~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  296 (346)
                      +.|+.|++||++...           .+...+.+|...|.+++|+|++ .+|++|+.|+.|++||+++            
T Consensus       275 s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~iwd~~~------------  341 (393)
T 1erj_A          275 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND-EYILSGSKDRGVLFWDKKS------------  341 (393)
T ss_dssp             ETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGG-CEEEEEETTSEEEEEETTT------------
T ss_pred             eCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCC-CEEEEEeCCCeEEEEECCC------------
Confidence            999999999997532           2345677899999999999999 9999999999999999998            


Q ss_pred             CCccccccccccccccccceeeEEEeCC------CCCcEEEEeecCCeEEEeeec
Q 019059          297 ESPNQRANSLLNSYSDYEDSVYGLAWSS------REPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~~l~s~~~d~~v~vw~~~  345 (346)
                             ++++..+.+|...|.+++|++      +++ +|++++.|++|++|+++
T Consensus       342 -------~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~-~l~sgs~Dg~i~iW~~~  388 (393)
T 1erj_A          342 -------GNPLLMLQGHRNSVISVAVANGSSLGPEYN-VFATGSGDCKARIWKYK  388 (393)
T ss_dssp             -------CCEEEEEECCSSCEEEEEECSSCTTCTTCE-EEEEEETTSEEEEEEEE
T ss_pred             -------CeEEEEECCCCCCEEEEEecCCcCcCCCCC-EEEEECCCCcEEECccc
Confidence                   888889999999999999986      565 89999999999999985

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=4.9e-42  Score=290.83  Aligned_cols=254  Identities=18%  Similarity=0.181  Sum_probs=202.8

Q ss_pred             ccccceEEeeecCCCCceEEEEeecCCcceEEEEecCccc--CCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEe
Q 019059           63 SHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELY--GQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI  140 (346)
Q Consensus        63 ~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  140 (346)
                      .|+..|.+++|+|+|+.|+++     .|+++++||.....  .....+..........+...|.+++|+|++.  +++++
T Consensus        28 ~~~~~v~~~~fs~dG~~l~~~-----sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~--l~~~s  100 (344)
T 4gqb_B           28 CMERQLEAARYRSDGALLLGA-----SSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERG--ILVAS  100 (344)
T ss_dssp             SCCSEEEEEEECTTSCEEEEE-----ECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTE--EEEEE
T ss_pred             cccCCEEEEEECCCCCEEEEE-----eCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCe--EEEEE
Confidence            477889999999999877764     46677777632100  0000011112222335678899999999875  77888


Q ss_pred             cCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeC
Q 019059          141 DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYD  217 (346)
Q Consensus       141 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~  217 (346)
                      .||.|++||+.+++...... ....+|...|.+++|+|++++|++++.|+.|++||+++++++..+. +|   |.+++|+
T Consensus       101 ~dg~v~lWd~~~~~~~~~~~-~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~-~h~~~V~~~~~~  178 (344)
T 4gqb_B          101 DSGAVELWELDENETLIVSK-FCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYR-AHAAQVTCVAAS  178 (344)
T ss_dssp             TTSEEEEEEECTTSSCEEEE-EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEEC
T ss_pred             CCCEEEEEeccCCCceeEee-ccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEc-CcCCceEEEEec
Confidence            99999999999876543332 2234678899999999999999999999999999999999888876 55   9999999


Q ss_pred             CCCCcEEEEecCCCeEEEEEcccCCcceeeec--CCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccc
Q 019059          218 TKKKHLLVTAADESGIHLWDLRMLKAPIQELP--GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESL  295 (346)
Q Consensus       218 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  295 (346)
                      |++..+|++++.|++|++||+++ .++...+.  .|...+.+++|+|++..+|++|+.|+.|+|||+++           
T Consensus       179 ~~~~~~l~s~s~D~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~-----------  246 (344)
T 4gqb_B          179 PHKDSVFLSCSEDNRILLWDTRC-PKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS-----------  246 (344)
T ss_dssp             SSCTTEEEEEETTSCEEEEETTS-SSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC-----------
T ss_pred             CCCCCceeeeccccccccccccc-cceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCC-----------
Confidence            99976899999999999999997 44666554  45567999999997758999999999999999998           


Q ss_pred             cCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          296 VESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                              ++++..+.+|...|++++|+|++..+|++++.|++|+|||++
T Consensus       247 --------~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~  288 (344)
T 4gqb_B          247 --------TSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSS  288 (344)
T ss_dssp             ----------CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTT
T ss_pred             --------CcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECC
Confidence                    889999999999999999999986689999999999999975

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.7e-40  Score=279.28  Aligned_cols=288  Identities=14%  Similarity=0.228  Sum_probs=233.7

Q ss_pred             eeecccceeeEeeeccCCCCc-ceEEEeecccCCCCeEEEEEecCCCCe--EEEeeeeccccceEEeeecCCCCceEEEE
Q 019059            8 IGYGLKYQARCISDVKADTDH-TSFLTGTLSLKEENEVHLLRLSSGGTE--LICEGLFSHPNEIWDLSSCPFDQRIFSTV   84 (346)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   84 (346)
                      +...++.+...+..+.++++. ..++.|    +.++.+.+|++......  .....+.+|...|.+++|+|++++++++ 
T Consensus         9 l~~~l~gH~~~V~~l~~~~~~~~~l~s~----s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~-   83 (319)
T 3frx_A            9 LRGTLEGHNGWVTSLATSAGQPNLLLSA----SRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSA-   83 (319)
T ss_dssp             EEEEECCCSSCEEEEEECSSCTTEEEEE----ETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEE-
T ss_pred             EEEEEccccceEEEEEccCCCccEEEEe----cCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEE-
Confidence            344566677788888888765 556665    47899999999754332  3346778999999999999999988885 


Q ss_pred             eecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeeccc
Q 019059           85 FSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQS  164 (346)
Q Consensus        85 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~  164 (346)
                         +.|++|++||+.         +.+.+..+.+|...|.+++|+|++. ++++++.|+.|++||++.. ..     ...
T Consensus        84 ---s~D~~v~~wd~~---------~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~vwd~~~~-~~-----~~~  144 (319)
T 3frx_A           84 ---SWDKTLRLWDVA---------TGETYQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKGQ-CL-----ATL  144 (319)
T ss_dssp             ---ETTSEEEEEETT---------TTEEEEEEECCSSCEEEEEECTTSC-EEEEEETTSCEEEEETTSC-EE-----EEE
T ss_pred             ---eCCCEEEEEECC---------CCCeeEEEccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCC-eE-----EEE
Confidence               699999999998         6788889999999999999999998 4777789999999999632 11     122


Q ss_pred             CCCceeeEEEEeCCCC------CcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEE
Q 019059          165 SGMLHYLSGGAWDPHD------VNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHL  235 (346)
Q Consensus       165 ~~~~~~v~~~~~~~~~------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i  235 (346)
                      .+|...+.+++|.|..      ..+++++.|+.|++||+++.+....+. +|   |.+++|+|++. +|++++.|+.|++
T Consensus       145 ~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~sp~g~-~l~s~~~dg~i~i  222 (319)
T 3frx_A          145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI-GHNSNINTLTASPDGT-LIASAGKDGEIML  222 (319)
T ss_dssp             CCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEEC-CCCSCEEEEEECTTSS-EEEEEETTCEEEE
T ss_pred             eccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeec-CCCCcEEEEEEcCCCC-EEEEEeCCCeEEE
Confidence            3567789999999854      479999999999999999887776665 55   99999999998 9999999999999


Q ss_pred             EEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccc-----
Q 019059          236 WDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSY-----  310 (346)
Q Consensus       236 ~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  310 (346)
                      ||++. .+++..+.. ...|.+++|+|++ .+|++++.+ .+++|++..                   ...+..+     
T Consensus       223 wd~~~-~~~~~~~~~-~~~v~~~~~sp~~-~~la~~~~~-~i~v~~~~~-------------------~~~~~~~~~~~~  279 (319)
T 3frx_A          223 WNLAA-KKAMYTLSA-QDEVFSLAFSPNR-YWLAAATAT-GIKVFSLDP-------------------QYLVDDLRPEFA  279 (319)
T ss_dssp             EETTT-TEEEEEEEC-CSCEEEEEECSSS-SEEEEEETT-EEEEEEETT-------------------EEEEEEECCCCT
T ss_pred             EECCC-CcEEEEecC-CCcEEEEEEcCCC-CEEEEEcCC-CcEEEEeCc-------------------CeeeeccCcccc
Confidence            99997 556777764 5689999999999 888888755 599999986                   3322222     


Q ss_pred             ---ccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          311 ---SDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       311 ---~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                         ..|...+.+++|+|+|+ +|++++.|+.|++|++.
T Consensus       280 ~~~~~~~~~v~~~~~spdg~-~l~sg~~Dg~i~vWd~~  316 (319)
T 3frx_A          280 GYSKAAEPHAVSLAWSADGQ-TLFAGYTDNVIRVWQVM  316 (319)
T ss_dssp             TCCGGGCCCEEEEEECTTSS-EEEEEETTSCEEEEEEE
T ss_pred             ccccCcCcceeEEEECCCCC-EEEEeecCceEEEEEEe
Confidence               23566799999999997 89999999999999984

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=9.7e-41  Score=304.62  Aligned_cols=291  Identities=15%  Similarity=0.210  Sum_probs=230.0

Q ss_pred             ccceeeEeeeccCCCCcc-eEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCc
Q 019059           12 LKYQARCISDVKADTDHT-SFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGES   90 (346)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d   90 (346)
                      +..+...+..+.++++.. +++.|    +.++.+.+|+..+.   .....+.+|.+.|.+++|+|+++.|+++    +.|
T Consensus       143 l~gh~~~v~~v~f~p~~~~~l~s~----s~D~~v~lwd~~~~---~~~~~l~~H~~~V~~v~fspdg~~las~----s~D  211 (611)
T 1nr0_A          143 LTGQARAMNSVDFKPSRPFRIISG----SDDNTVAIFEGPPF---KFKSTFGEHTKFVHSVRYNPDGSLFAST----GGD  211 (611)
T ss_dssp             CCCCSSCEEEEEECSSSSCEEEEE----ETTSCEEEEETTTB---EEEEEECCCSSCEEEEEECTTSSEEEEE----ETT
T ss_pred             ecCCCCCceEEEECCCCCeEEEEE----eCCCeEEEEECCCC---eEeeeeccccCceEEEEECCCCCEEEEE----ECC
Confidence            344556777888888775 57666    36789999986542   2345678999999999999999988875    699


Q ss_pred             ceEEEEecCcccCCCCCccceeeeeee-------ccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceee---
Q 019059           91 YGAAIWQIPELYGQLNSPQLERIAALD-------AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQ---  160 (346)
Q Consensus        91 ~~i~vw~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~---  160 (346)
                      ++|++||+.         .++.+..+.       +|.+.|.+++|+|+++. +++++.|+.|++||+.+++....+.   
T Consensus       212 ~~i~lwd~~---------~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~-l~s~s~D~~v~lWd~~~~~~~~~~~~~~  281 (611)
T 1nr0_A          212 GTIVLYNGV---------DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK-IASASADKTIKIWNVATLKVEKTIPVGT  281 (611)
T ss_dssp             SCEEEEETT---------TCCEEEECBCTTSSSCSSSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred             CcEEEEECC---------CCcEeeeeccccccccccCCCEEEEEECCCCCE-EEEEeCCCeEEEEeCCCCceeeeecCCC
Confidence            999999987         455555553       79999999999999984 7777899999999998754322211   


Q ss_pred             -----------------------------------ecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccce
Q 019059          161 -----------------------------------SKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNS  205 (346)
Q Consensus       161 -----------------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  205 (346)
                                                         .....+|...|.+++|+|+++.|++++.|+.|++||+.+++....
T Consensus       282 ~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~  361 (611)
T 1nr0_A          282 RIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRV  361 (611)
T ss_dssp             SGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEC
T ss_pred             CccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeee
Confidence                                               112246888999999999999999999999999999886543211


Q ss_pred             e-------------------------------------------------------------------------------
Q 019059          206 I-------------------------------------------------------------------------------  206 (346)
Q Consensus       206 ~-------------------------------------------------------------------------------  206 (346)
                      +                                                                               
T Consensus       362 ~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~  441 (611)
T 1nr0_A          362 FPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK  441 (611)
T ss_dssp             SSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE
T ss_pred             cccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCc
Confidence            1                                                                               


Q ss_pred             ----eccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCc-ceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEE
Q 019059          207 ----EHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA-PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLW  280 (346)
Q Consensus       207 ----~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iw  280 (346)
                          .... +.+++|+|+++ ++++|+.|+.|++||+..... .+.. .+|...|++++|+|++ .+|++++.|++|++|
T Consensus       442 ~~~~~~~~~v~~va~spdg~-~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg-~~las~s~d~~v~~w  518 (611)
T 1nr0_A          442 LTEVPISYNSSCVALSNDKQ-FVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNG-AFLVATDQSRKVIPY  518 (611)
T ss_dssp             EEEEECSSCEEEEEECTTSC-EEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTS-SEEEEEETTSCEEEE
T ss_pred             eeeeecCCCceEEEEeCCCC-EEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCC-CEEEEEcCCCCEEEE
Confidence                0011 57899999998 999999999999999986321 1233 5799999999999999 999999999999999


Q ss_pred             ecCCCCCCCCCcccccCCccccccccccc--cccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          281 LVSTSNHDELPSESLVESPNQRANSLLNS--YSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       281 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      |+..                  .+++...  +..|...|++++|+|+++ +|++++.|++|++|+++
T Consensus       519 ~~~~------------------~~~~~~~~~~~~H~~~V~~v~fspdg~-~lasgs~D~~v~lW~~~  566 (611)
T 1nr0_A          519 SVAN------------------NFELAHTNSWTFHTAKVACVSWSPDNV-RLATGSLDNSVIVWNMN  566 (611)
T ss_dssp             EGGG------------------TTEESCCCCCCCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETT
T ss_pred             EcCC------------------CCceeeeeeeeecccceeEEEECCCCC-EEEEEECCCcEEEEECC
Confidence            9975                  1233332  345999999999999997 99999999999999985

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=3.1e-40  Score=274.92  Aligned_cols=255  Identities=17%  Similarity=0.281  Sum_probs=202.2

Q ss_pred             eeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecC--CCCcEE
Q 019059           60 GLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSS--GRHDKL  137 (346)
Q Consensus        60 ~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~  137 (346)
                      .+.+|.+.|.+++|+|++++|+++    +.|++|+||+++.       ...+.+.++.+|.+.|.+++|+++  ++ +++
T Consensus         4 ~~~~h~~~V~~~~~s~~g~~las~----s~D~~v~iw~~~~-------~~~~~~~~l~gH~~~V~~v~~s~~~~g~-~l~   71 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDYYGKRMATC----SSDKTIKIFEVEG-------ETHKLIDTLTGHEGPVWRVDWAHPKFGT-ILA   71 (297)
T ss_dssp             ECCSCSSCEEEEEECTTSSEEEEE----ETTSCEEEEEBCS-------SCBCCCEEECCCSSCEEEEEECCGGGCS-EEE
T ss_pred             eccCCcCceEEEEECCCCCEEEEE----eCCCEEEEEecCC-------CCcEEEEEEccccCCeEEEEecCCCcCC-EEE
Confidence            456899999999999999998885    6999999999862       134667889999999999999864  55 477


Q ss_pred             EEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCC--CCcEEEEecCCeEEEEEccCCCcc-ceeeccc---e
Q 019059          138 VSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPH--DVNAVAATCESSVQFWDLRSMGKT-NSIEHAH---V  211 (346)
Q Consensus       138 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~---v  211 (346)
                      +++.|+.|++||++++.......   ..+|...|.+++|+|+  +..+++++.|+.|++||++++... .....+|   |
T Consensus        72 s~s~D~~v~iWd~~~~~~~~~~~---~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v  148 (297)
T 2pm7_B           72 SCSYDGKVMIWKEENGRWSQIAV---HAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGV  148 (297)
T ss_dssp             EEETTTEEEEEEBSSSCBCCCEE---ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCE
T ss_pred             EEcCCCEEEEEEcCCCceEEEEE---eecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCcc
Confidence            77899999999998654221111   2346678999999997  788999999999999999876422 2222345   9


Q ss_pred             eEEEeCCC-------------CCcEEEEecCCCeEEEEEcccCCc---ceeeecCCCcceEEEEeCCCC--CcEEEEecC
Q 019059          212 RNVDYDTK-------------KKHLLVTAADESGIHLWDLRMLKA---PIQELPGHTHWTWAVCCNPEY--DGFILSAGT  273 (346)
Q Consensus       212 ~~~~~~~~-------------~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~v~~v~~~~~~--~~~l~s~~~  273 (346)
                      .+++|+|+             +. +|++|+.|+.|++||++....   ....+.+|...|.+++|+|++  ..+|++++.
T Consensus       149 ~~~~~~p~~~~~~~~~~~~~~~~-~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~  227 (297)
T 2pm7_B          149 NSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQ  227 (297)
T ss_dssp             EEEEECCCC------------CC-EEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET
T ss_pred             ceEeecCCcccccccCCCCCCcc-eEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEEC
Confidence            99999997             34 899999999999999986332   456788999999999999984  389999999


Q ss_pred             CCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          274 DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       274 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      |++|+|||++......              ...+.....|...|.+++|+|+++ +|++++.|+.|++|+..
T Consensus       228 D~~v~iWd~~~~~~~~--------------~~~~~~~~~~~~~v~~~~~s~~g~-~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          228 DRTCIIWTQDNEQGPW--------------KKTLLKEEKFPDVLWRASWSLSGN-VLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             TSCEEEEEESSTTSCC--------------EEEESSSSCCSSCEEEEEECSSSC-CEEEEETTSCEEEEEEC
T ss_pred             CCcEEEEEeCCCCCcc--------------ceeeeecccCCCcEEEEEECCCCC-EEEEEcCCCcEEEEEEC
Confidence            9999999998610000              011111246778899999999997 89999999999999864

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.8e-40  Score=281.62  Aligned_cols=248  Identities=18%  Similarity=0.251  Sum_probs=213.2

Q ss_pred             EeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEE
Q 019059           58 CEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKL  137 (346)
Q Consensus        58 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  137 (346)
                      ...+.+|.+.|.+++|+|+++.|+++    +.|+.|++||+.         ..+.+..+..|...|.+++|+|+++. ++
T Consensus        48 ~~~l~gH~~~v~~~~~s~d~~~l~s~----s~Dg~v~iWd~~---------~~~~~~~~~~~~~~v~~~~~s~~~~~-l~  113 (340)
T 1got_B           48 RRTLRGHLAKIYAMHWGTDSRLLLSA----SQDGKLIIWDSY---------TTNKVHAIPLRSSWVMTCAYAPSGNY-VA  113 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEE----ETTTEEEEEETT---------TCCEEEEEECSSSCEEEEEECTTSSE-EE
T ss_pred             heeecCCCCceEEEEECCCCCEEEEE----eCCCcEEEEECC---------CCCcceEeecCCccEEEEEECCCCCE-EE
Confidence            46778999999999999999988885    699999999988         66778888899999999999999984 77


Q ss_pred             EEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEE
Q 019059          138 VSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNV  214 (346)
Q Consensus       138 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~  214 (346)
                      +++.|+.|++|++.+....... .....+|...+.++.|++++. +++++.|+.|++||+++++....+. +|   |.++
T Consensus       114 s~~~d~~v~iw~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~-~h~~~v~~~  190 (340)
T 1got_B          114 CGGLDNICSIYNLKTREGNVRV-SRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFT-GHTGDVMSL  190 (340)
T ss_dssp             EEETTCEEEEEETTTCSBSCEE-EEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEE
T ss_pred             EEeCCCeEEEEECccCCCccee-EEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEc-CCCCceEEE
Confidence            7788999999999865432222 222346777999999998765 8899999999999999998887776 45   9999


Q ss_pred             EeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCccc
Q 019059          215 DYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSES  294 (346)
Q Consensus       215 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  294 (346)
                      +|+|++. ++++|+.|+.|++||+++ ..++..+.+|...|++++|+|++ .+|++++.|++|++||++.          
T Consensus       191 ~~~~~~~-~l~sg~~d~~v~~wd~~~-~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~d~~v~iwd~~~----------  257 (340)
T 1got_B          191 SLAPDTR-LFVSGACDASAKLWDVRE-GMCRQTFTGHESDINAICFFPNG-NAFATGSDDATCRLFDLRA----------  257 (340)
T ss_dssp             EECTTSS-EEEEEETTSCEEEEETTT-CSEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTT----------
T ss_pred             EECCCCC-EEEEEeCCCcEEEEECCC-CeeEEEEcCCcCCEEEEEEcCCC-CEEEEEcCCCcEEEEECCC----------
Confidence            9999998 899999999999999997 55788899999999999999999 9999999999999999997          


Q ss_pred             ccCCccccccccccccc--cccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          295 LVESPNQRANSLLNSYS--DYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       295 ~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                               .+.+..+.  .+...|++++|+|+++ +|++++.|+.|++||+.
T Consensus       258 ---------~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~d~~i~vwd~~  300 (340)
T 1got_B          258 ---------DQELMTYSHDNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDAL  300 (340)
T ss_dssp             ---------TEEEEEECCTTCCSCEEEEEECTTSS-EEEEEETTSEEEEEETT
T ss_pred             ---------CcEEEEEccCCcccceEEEEECCCCC-EEEEECCCCeEEEEEcc
Confidence                     55554443  2335799999999997 99999999999999974

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.8e-41  Score=293.58  Aligned_cols=300  Identities=18%  Similarity=0.298  Sum_probs=245.2

Q ss_pred             eeEeeeccCCCCcc-eEEEeeccc------CCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecC
Q 019059           16 ARCISDVKADTDHT-SFLTGTLSL------KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTG   88 (346)
Q Consensus        16 ~~~~~~~~~~~~~~-~~~~g~~~~------~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~   88 (346)
                      ...+..+.+++++. .+++|+...      ..++.+++|++....... ......|...|.+++|+|+++.|+++    +
T Consensus        12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~----~   86 (416)
T 2pm9_A           12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEK-PIASLQVDSKFNDLDWSHNNKIIAGA----L   86 (416)
T ss_dssp             EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCS-CSCCCCCSSCEEEEEECSSSSCEEEE----E
T ss_pred             hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCc-EEEEEecCCceEEEEECCCCCeEEEE----c
Confidence            34577788999876 677775433      578899999998653211 12334689999999999999988885    5


Q ss_pred             CcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCC----ceeeeccc
Q 019059           89 ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKN----AQVQSKQS  164 (346)
Q Consensus        89 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~----~~~~~~~~  164 (346)
                      .|+.|++|++....     ...+.+..+..|...|.+++|+|++..++++++.|+.|++||+.+....    ........
T Consensus        87 ~dg~v~vw~~~~~~-----~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~  161 (416)
T 2pm9_A           87 DNGSLELYSTNEAN-----NAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQS  161 (416)
T ss_dssp             SSSCEEEECCSSTT-----SCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCS
T ss_pred             cCCeEEEeeccccc-----ccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccc
Confidence            89999999998210     0134777888999999999999995446888888999999999876511    11111223


Q ss_pred             CCCceeeEEEEeCCC-CCcEEEEecCCeEEEEEccCCCccceeecc-------c-eeEEEeCCCCCcEEEEecCCC---e
Q 019059          165 SGMLHYLSGGAWDPH-DVNAVAATCESSVQFWDLRSMGKTNSIEHA-------H-VRNVDYDTKKKHLLVTAADES---G  232 (346)
Q Consensus       165 ~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-------~-v~~~~~~~~~~~~l~~~~~dg---~  232 (346)
                      ..|...+.+++|+|+ +..+++++.|+.|++||+++++....+...       . +.+++|+|++..++++++.|+   .
T Consensus       162 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~  241 (416)
T 2pm9_A          162 MSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPS  241 (416)
T ss_dssp             CCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCC
T ss_pred             cCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCce
Confidence            457779999999999 677888889999999999998887776642       2 999999999866899999998   9


Q ss_pred             EEEEEcccCCcceeeec-CCCcceEEEEeCC-CCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccc
Q 019059          233 IHLWDLRMLKAPIQELP-GHTHWTWAVCCNP-EYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSY  310 (346)
Q Consensus       233 i~i~d~~~~~~~~~~~~-~~~~~v~~v~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (346)
                      |++||++....++..+. +|...|.+++|+| ++ .+|++++.|+.|++||+++                   ++++..+
T Consensus       242 i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~~l~s~~~dg~v~~wd~~~-------------------~~~~~~~  301 (416)
T 2pm9_A          242 ILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDE-HLLLSSGRDNTVLLWNPES-------------------AEQLSQF  301 (416)
T ss_dssp             CCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCS-SCEEEEESSSEEEEECSSS-------------------CCEEEEE
T ss_pred             EEEEeCCCCCCCcEEeecCccCceeEEEeCCCCC-CeEEEEeCCCCEEEeeCCC-------------------Cccceee
Confidence            99999998656788888 8999999999999 77 9999999999999999998                   7888899


Q ss_pred             ccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          311 SDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       311 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      .+|...|.+++|+|+++.+|++++.|+.|++|+++
T Consensus       302 ~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~  336 (416)
T 2pm9_A          302 PARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQ  336 (416)
T ss_dssp             ECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESC
T ss_pred             cCCCCceEEEEECCCCCCEEEEEecCCcEEEEEcc
Confidence            99999999999999984599999999999999985

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.9e-41  Score=288.17  Aligned_cols=268  Identities=18%  Similarity=0.139  Sum_probs=203.1

Q ss_pred             CeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecC--CcceEEEEecCcccCCCCCccceeeeeeecc
Q 019059           42 NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTG--ESYGAAIWQIPELYGQLNSPQLERIAALDAH  119 (346)
Q Consensus        42 ~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~--~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~  119 (346)
                      .....|.++..       ....|...|++++|+|||++|+++.....  .|+.|++|+.....     +..........|
T Consensus        26 ~~~~~w~~p~~-------~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~-----~~~~~~~~~~~~   93 (357)
T 4g56_B           26 SKGSAWGRPVT-------APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGA-----PNESLCTAGVQT   93 (357)
T ss_dssp             ---------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC--------CGGGCSEEEEC
T ss_pred             ccccccCCCCC-------CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCC-----cceeEecccCCC
Confidence            34455665542       22369999999999999999888631100  17889999876211     112233344578


Q ss_pred             CCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccC
Q 019059          120 VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRS  199 (346)
Q Consensus       120 ~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~  199 (346)
                      ...|.+++|+|++.  +++++.|+.|++||+.+++...... ....+|...|.+++|+|+++.|++++.|+.|++||+++
T Consensus        94 ~~~V~~~~~s~d~~--~l~~s~dg~v~lWd~~~~~~~~~~~-~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~  170 (357)
T 4g56_B           94 EAGVTDVAWVSEKG--ILVASDSGAVELWEILEKESLLVNK-FAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ  170 (357)
T ss_dssp             SSCEEEEEEETTTE--EEEEETTSCEEEC--------CCCC-EEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred             CCCEEEEEEcCCCC--EEEEECCCEEEEeeccccceeEEEe-eccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence            89999999999987  6777889999999998765432221 12245777999999999999999999999999999999


Q ss_pred             CCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeee--cCCCcceEEEEeCCCCCcEEEEecCC
Q 019059          200 MGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL--PGHTHWTWAVCCNPEYDGFILSAGTD  274 (346)
Q Consensus       200 ~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~v~~v~~~~~~~~~l~s~~~d  274 (346)
                      ++.+..+. +|   |++++|+|+++.++++++.|+.|++||+++.. ++..+  ..|...+.+++|+|++..+|++|+.|
T Consensus       171 ~~~~~~~~-~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~-~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d  248 (357)
T 4g56_B          171 KAVLKSYN-AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPK-PATRIDFCASDTIPTSVTWHPEKDDTFACGDET  248 (357)
T ss_dssp             TEEEEEEC-CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSS-CBCBCCCTTCCSCEEEEEECTTSTTEEEEEESS
T ss_pred             CcEEEEEc-CCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCc-eeeeeeeccccccccchhhhhcccceEEEeecc
Confidence            98888776 45   99999999987689999999999999999743 44433  45678899999999876899999999


Q ss_pred             CeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          275 STVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       275 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      +.|++||+++                   ++++..+.+|...|++++|+|++..+|++++.|++|+|||++
T Consensus       249 ~~i~~wd~~~-------------------~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~  300 (357)
T 4g56_B          249 GNVSLVNIKN-------------------PDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDAD  300 (357)
T ss_dssp             SCEEEEESSC-------------------GGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTT
T ss_pred             cceeEEECCC-------------------CcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECC
Confidence            9999999998                   888899999999999999999986689999999999999975

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=8.7e-40  Score=279.09  Aligned_cols=315  Identities=16%  Similarity=0.198  Sum_probs=235.3

Q ss_pred             ceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCC---CCceEEEEeecCCc
Q 019059           14 YQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPF---DQRIFSTVFSTGES   90 (346)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~~~~~~~~~d   90 (346)
                      .+...+.++.+++++.++++.......++.+.+|++....  .......+|...|.+++|+|+   +..++++    +.|
T Consensus        16 ~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~----~~d   89 (357)
T 3i2n_A           16 GFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGD--LKLLREIEKAKPIKCGTFGATSLQQRYLATG----DFG   89 (357)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSS--EEEEEEEEESSCEEEEECTTCCTTTCCEEEE----ETT
T ss_pred             CCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCc--ccceeeecccCcEEEEEEcCCCCCCceEEEe----cCC
Confidence            3455788888999887776543221247899999998753  233444579999999999998   5777774    689


Q ss_pred             ceEEEEecCcccCCCCCccce-eeeeeeccCCceEEEEe------ecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecc
Q 019059           91 YGAAIWQIPELYGQLNSPQLE-RIAALDAHVGKINCVLW------WSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQ  163 (346)
Q Consensus        91 ~~i~vw~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~------~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~  163 (346)
                      +.|++||+.         ..+ ++..+..|...|.+++|      +|+++ .+++++.|+.|++||+.++..........
T Consensus        90 g~i~iwd~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~  159 (357)
T 3i2n_A           90 GNLHIWNLE---------APEMPVYSVKGHKEIINAIDGIGGLGIGEGAP-EIVTGSRDGTVKVWDPRQKDDPVANMEPV  159 (357)
T ss_dssp             SCEEEECTT---------SCSSCSEEECCCSSCEEEEEEESGGGCC-CCC-EEEEEETTSCEEEECTTSCSSCSEEECCC
T ss_pred             CeEEEEeCC---------CCCccEEEEEecccceEEEeeccccccCCCcc-EEEEEeCCCeEEEEeCCCCCCcceecccc
Confidence            999999998         444 67788899999999965      67777 47777889999999999776333333322


Q ss_pred             cCCCceeeEEEE----eCCCCCcEEEEecCCeEEEEEccCCCccceeeccc-eeEEEeCC---CCCcEEEEecCCCeEEE
Q 019059          164 SSGMLHYLSGGA----WDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDT---KKKHLLVTAADESGIHL  235 (346)
Q Consensus       164 ~~~~~~~v~~~~----~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~---~~~~~l~~~~~dg~i~i  235 (346)
                      ...+...+.+++    |+|++..+++++.|+.|++||+++++......... +.+++|+|   ++. .+++++.||.|++
T Consensus       160 ~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~l~~~~~dg~i~i  238 (357)
T 3i2n_A          160 QGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMN-KLVATSLEGKFHV  238 (357)
T ss_dssp             TTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCC-EEEEEESTTEEEE
T ss_pred             CCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCC-EEEEECCCCeEEE
Confidence            222244788887    78999999999999999999999988755544333 99999999   787 8999999999999


Q ss_pred             EEcccCCcceeeec-----CCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccc
Q 019059          236 WDLRMLKAPIQELP-----GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSY  310 (346)
Q Consensus       236 ~d~~~~~~~~~~~~-----~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (346)
                      ||++. ..++..+.     +|...|++++|+|++..+|++++.||.|++||++.....................+++..+
T Consensus       239 ~d~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  317 (357)
T 3i2n_A          239 FDMRT-QHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNV  317 (357)
T ss_dssp             EEEEE-EETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEE
T ss_pred             EeCcC-CCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecc
Confidence            99987 44444444     8999999999999993389999999999999998743221110000000001123567778


Q ss_pred             ccccceeeEEEeCCCCCcEEEEeecCCeEEEeeecC
Q 019059          311 SDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLEK  346 (346)
Q Consensus       311 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~~  346 (346)
                      .+|...|++++|+|+++.++++++.|+.|++|++++
T Consensus       318 ~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~  353 (357)
T 3i2n_A          318 TLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK  353 (357)
T ss_dssp             ECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred             ccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence            889999999999999984444899999999999864

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=7.4e-40  Score=298.81  Aligned_cols=288  Identities=13%  Similarity=0.142  Sum_probs=234.0

Q ss_pred             ceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceE
Q 019059           14 YQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGA   93 (346)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i   93 (346)
                      .+...+..+.++|++..++.|.    .++.+++|++...... ....+.+|.+.|.+++|+|+++.|+++.......+.|
T Consensus        57 ~h~~~v~~~~~spdg~~lasg~----~d~~v~lWd~~~~~~~-~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v  131 (611)
T 1nr0_A           57 EHSHQTTVAKTSPSGYYCASGD----VHGNVRIWDTTQTTHI-LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHV  131 (611)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEE----TTSEEEEEESSSTTCC-EEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEE
T ss_pred             CCCCceEEEEECCCCcEEEEEe----CCCCEEEeECCCCcce-eeEeecccCCceEEEEECCCCCEEEEEECCCCceeEE
Confidence            3445677888999999998885    5789999998654332 3356678999999999999999998874111123578


Q ss_pred             EEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEE
Q 019059           94 AIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSG  173 (346)
Q Consensus        94 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~  173 (346)
                      ++||..           .....+.+|...|.+++|+|+++..+++++.|+.|++||..+.+..     ....+|...|.+
T Consensus       132 ~~wd~~-----------~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~-----~~l~~H~~~V~~  195 (611)
T 1nr0_A          132 FLFDTG-----------TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFK-----STFGEHTKFVHS  195 (611)
T ss_dssp             EETTTC-----------CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEE-----EEECCCSSCEEE
T ss_pred             EEeeCC-----------CCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEe-----eeeccccCceEE
Confidence            888854           4556788999999999999999866788899999999998754321     223567889999


Q ss_pred             EEeCCCCCcEEEEecCCeEEEEEccCCCccceeec------cc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCc-
Q 019059          174 GAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH------AH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA-  243 (346)
Q Consensus       174 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~------~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-  243 (346)
                      ++|+|+++.+++++.|++|++||+.++++...+..      +|   |.+++|+|++. +|++++.|++|++||+++... 
T Consensus       196 v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~s~s~D~~v~lWd~~~~~~~  274 (611)
T 1nr0_A          196 VRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVATLKVE  274 (611)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEE
T ss_pred             EEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCC-EEEEEeCCCeEEEEeCCCCcee
Confidence            99999999999999999999999999887776632      45   99999999998 899999999999999875321 


Q ss_pred             -----------------------------------------ceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEec
Q 019059          244 -----------------------------------------PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLV  282 (346)
Q Consensus       244 -----------------------------------------~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~  282 (346)
                                                               +...+.+|...|++++|+|++ .+|++++.|++|++||+
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg-~~l~s~s~D~~v~~Wd~  353 (611)
T 1nr0_A          275 KTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADG-KTLFSADAEGHINSWDI  353 (611)
T ss_dssp             EEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEET
T ss_pred             eeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEEC
Confidence                                                     123446799999999999999 99999999999999999


Q ss_pred             CCCCCCCCCcccccCCcccccccccccc-ccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          283 STSNHDELPSESLVESPNQRANSLLNSY-SDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      .+                   ++....+ .+|...|.+++|++++  .+++++.|+.+++|++.
T Consensus       354 ~~-------------------~~~~~~~~~~h~~~v~~~~~s~~~--~l~s~s~d~~v~~w~~~  396 (611)
T 1nr0_A          354 ST-------------------GISNRVFPDVHATMITGIKTTSKG--DLFTVSWDDHLKVVPAG  396 (611)
T ss_dssp             TT-------------------CCEEECSSCSCSSCEEEEEECTTS--CEEEEETTTEEEEECSS
T ss_pred             CC-------------------CceeeecccCCcceEEEEEECCCC--cEEEEEcCCceEEeecC
Confidence            98                   5555444 5788999999999876  47899999999999864

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.2e-40  Score=292.46  Aligned_cols=329  Identities=9%  Similarity=0.045  Sum_probs=227.6

Q ss_pred             CcceeeecccceeeEeeeccCCC------CcceEEEeecc---------------cCCCCeEEEEEecCCCCeEE-Eeee
Q 019059            4 GSSGIGYGLKYQARCISDVKADT------DHTSFLTGTLS---------------LKEENEVHLLRLSSGGTELI-CEGL   61 (346)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~g~~~---------------~~~~~~i~~~~~~~~~~~~~-~~~~   61 (346)
                      +..+..|.++....++.+.+...      ..+.+++|+..               .+.++.|.+|++........ ...+
T Consensus       124 ~r~~~~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l  203 (524)
T 2j04_B          124 KRRGFIYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTI  203 (524)
T ss_dssp             CSCEEEEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEE
T ss_pred             CcceEEEECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEE
Confidence            33444555544444454444321      12788887632               34678899999976543221 2335


Q ss_pred             eccccceEEeeecCC------CCceEEEEeecCCcceEEEEecCcccCCCCC--ccceeeeeeeccCCceEEEEeecCCC
Q 019059           62 FSHPNEIWDLSSCPF------DQRIFSTVFSTGESYGAAIWQIPELYGQLNS--PQLERIAALDAHVGKINCVLWWSSGR  133 (346)
Q Consensus        62 ~~h~~~v~~~~~~~~------~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~  133 (346)
                      .+|.+.|.+++|+|+      +..|+++    +.|++|++||+.........  ...++...+.+|...|.+++|++++ 
T Consensus       204 ~~~~~~V~~v~wsp~~~~~~~~~~LAs~----s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-  278 (524)
T 2j04_B          204 VHSFGEVWDLKWHEGCHAPHLVGCLSFV----SQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-  278 (524)
T ss_dssp             EECCCSEEEEEECSSCCCSSSSCEEEEE----ETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-
T ss_pred             EecCCcEEEEEECCCCCCCCCCceEEEE----ecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-
Confidence            567899999999997      3455553    68999999999732110000  0112345678899999999999865 


Q ss_pred             CcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEE--EeCCCC-CcEEEEecCCeEEEEEccCCCccceeeccc
Q 019059          134 HDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGG--AWDPHD-VNAVAATCESSVQFWDLRSMGKTNSIEHAH  210 (346)
Q Consensus       134 ~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~  210 (346)
                       .+++++.||.|++||++++......    ..+|...|.++  .|+|++ ..|++++.|++|++||++++++...+. +|
T Consensus       279 -~lasgs~DgtV~lWD~~~~~~~~~~----~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~-~~  352 (524)
T 2j04_B          279 -TVVCGFKNGFVAEFDLTDPEVPSFY----DQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTV-SR  352 (524)
T ss_dssp             -EEEEEETTSEEEEEETTBCSSCSEE----EECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEE-EE
T ss_pred             -eEEEEeCCCEEEEEECCCCCCceEE----eecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccc-cc
Confidence             4888899999999999865433222    23467789999  578887 788999999999999999887766554 22


Q ss_pred             -----eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCC
Q 019059          211 -----VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTS  285 (346)
Q Consensus       211 -----v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~  285 (346)
                           +.+++|+|++. .+++++.|++|++||++. ...+..+.+|...|++|+|+|++ .+|++|+.|++|++||+...
T Consensus       353 ~~~~~v~~v~fsp~~~-~l~s~~~d~tv~lwd~~~-~~~~~~l~gH~~~V~sva~Sp~g-~~l~Sgs~Dgtv~lwd~~~~  429 (524)
T 2j04_B          353 FRGSNLVPVVYCPQIY-SYIYSDGASSLRAVPSRA-AFAVHPLVSRETTITAIGVSRLH-PMVLAGSADGSLIITNAARR  429 (524)
T ss_dssp             CSCCSCCCEEEETTTT-EEEEECSSSEEEEEETTC-TTCCEEEEECSSCEEEEECCSSC-CBCEEEETTTEEECCBSCSS
T ss_pred             cccCcccceEeCCCcC-eEEEeCCCCcEEEEECcc-cccceeeecCCCceEEEEeCCCC-CeEEEEECCCEEEEEechHh
Confidence                 78999999998 799999999999999997 44667788999999999999999 89999999999999998653


Q ss_pred             CCCCCC----------cccccCCccc---------------cccccccccccccceeeEEEeCCCCC--cEEEEeecCCe
Q 019059          286 NHDELP----------SESLVESPNQ---------------RANSLLNSYSDYEDSVYGLAWSSREP--WIFASLSYDGR  338 (346)
Q Consensus       286 ~~~~~~----------~~~~~~~~~~---------------~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~s~~~d~~  338 (346)
                      ......          ......++..               ..+.++..+.+|...|.+++|+|+++  .++|+|+.||.
T Consensus       430 ~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~  509 (524)
T 2j04_B          430 LLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGL  509 (524)
T ss_dssp             TTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSE
T ss_pred             hccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCce
Confidence            111100          0011111111               12556777889999999999999952  38999999999


Q ss_pred             EEEeeecC
Q 019059          339 VRNHMLEK  346 (346)
Q Consensus       339 v~vw~~~~  346 (346)
                      |+||++++
T Consensus       510 vrlw~l~~  517 (524)
T 2j04_B          510 LTLEYLSL  517 (524)
T ss_dssp             EEEEECSC
T ss_pred             EEEEEccc
Confidence            99999864

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2.9e-39  Score=293.45  Aligned_cols=272  Identities=22%  Similarity=0.387  Sum_probs=230.2

Q ss_pred             eeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEE
Q 019059           16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAI   95 (346)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~v   95 (346)
                      ...+..+.++++...++.+.    .++.+.+|++...    ....+.+|...|.+++|+|+++.++++    +.|+.|++
T Consensus       303 ~~~v~~~~~~~~~~~l~t~~----~d~~i~~w~~~~~----~~~~~~~~~~~v~~~~~s~~g~~l~~~----~~dg~v~~  370 (577)
T 2ymu_A          303 SSSVWGVAFSPDGQTIASAS----DDKTVKLWNRNGQ----HLQTLTGHSSSVWGVAFSPDGQTIASA----SDDKTVKL  370 (577)
T ss_dssp             SSCEEEEEECTTSSEEEEEE----TTSCEEEEETTSC----EEEEECCCSSCEEEEEECTTSSEEEEE----ETTSEEEE
T ss_pred             CCCeEEEEECCCCCEEEEEe----CCCeEEEEeCCCC----eeEEEeCCCCCEEEEEECCCCCEEEEE----eCCCEEEE
Confidence            34556667778888887764    5788999986543    235567899999999999999988885    58999999


Q ss_pred             EecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEE
Q 019059           96 WQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGA  175 (346)
Q Consensus        96 w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~  175 (346)
                      |+..          .+.+..+..|...|.+++|+|+++. +++++.|+.|++||.. ++...     ...+|...+.+++
T Consensus       371 ~~~~----------~~~~~~~~~~~~~v~~~~~s~dg~~-l~~~~~d~~v~~~~~~-~~~~~-----~~~~~~~~v~~~~  433 (577)
T 2ymu_A          371 WNRN----------GQLLQTLTGHSSSVRGVAFSPDGQT-IASASDDKTVKLWNRN-GQLLQ-----TLTGHSSSVWGVA  433 (577)
T ss_dssp             EETT----------CCEEEEEECCSSCEEEEEECTTSSC-EEEEETTSEEEEECTT-CCEEE-----EEECCSSCEEEEE
T ss_pred             EcCC----------CCEEEEecCCCCCeEEEEECCCCCE-EEEEeCCCEEEEEeCC-CCEEE-----EecCCCCCeEEEE
Confidence            9964          4677788899999999999999995 7777889999999964 22211     1234677899999


Q ss_pred             eCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCC
Q 019059          176 WDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHT  252 (346)
Q Consensus       176 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  252 (346)
                      |+|+++.+++++.|+.|++||+. ++.+..+. +|   |.+++|+|+++ +|++++.|+.|++||..  .+.+..+.+|.
T Consensus       434 ~s~d~~~l~~~~~d~~v~~w~~~-~~~~~~~~-~~~~~v~~~~~spd~~-~las~~~d~~i~iw~~~--~~~~~~~~~h~  508 (577)
T 2ymu_A          434 FSPDDQTIASASDDKTVKLWNRN-GQLLQTLT-GHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNRN--GQLLQTLTGHS  508 (577)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETT-SCEEEEEE-CCSSCEEEEEECTTSC-EEEEEETTSEEEEEETT--SCEEEEEECCS
T ss_pred             ECCCCCEEEEEcCCCEEEEEECC-CCEEEEEc-CCCCCEEEEEEcCCCC-EEEEEeCCCEEEEEcCC--CCEEEEEeCCC
Confidence            99999999999999999999964 55555555 44   99999999998 89999999999999964  55788999999


Q ss_pred             cceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEE
Q 019059          253 HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFAS  332 (346)
Q Consensus       253 ~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  332 (346)
                      ..|++++|+|++ ++|++++.|+.|++||..                    ++++..+.+|...|++++|+|+++ +|++
T Consensus       509 ~~v~~l~~s~dg-~~l~s~~~dg~v~lwd~~--------------------~~~~~~~~~h~~~v~~~~fs~dg~-~l~s  566 (577)
T 2ymu_A          509 SSVRGVAFSPDG-QTIASASDDKTVKLWNRN--------------------GQLLQTLTGHSSSVWGVAFSPDGQ-TIAS  566 (577)
T ss_dssp             SCEEEEEECTTS-SCEEEEETTSEEEEECTT--------------------SCEEEEEECCSSCEEEEEECTTSS-CEEE
T ss_pred             CCEEEEEEcCCC-CEEEEEECcCEEEEEeCC--------------------CCEEEEEcCCCCCEEEEEEcCCCC-EEEE
Confidence            999999999999 999999999999999964                    578888999999999999999997 8899


Q ss_pred             eecCCeEEEee
Q 019059          333 LSYDGRVRNHM  343 (346)
Q Consensus       333 ~~~d~~v~vw~  343 (346)
                      ++.|++|++||
T Consensus       567 ~~~D~~i~~Wd  577 (577)
T 2ymu_A          567 ASSDKTVKLWN  577 (577)
T ss_dssp             EETTSCEEEEC
T ss_pred             EeCCCEEEEeC
Confidence            99999999997

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=3.2e-40  Score=284.29  Aligned_cols=256  Identities=16%  Similarity=0.245  Sum_probs=213.4

Q ss_pred             eEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCC
Q 019059           55 ELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRH  134 (346)
Q Consensus        55 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  134 (346)
                      ......+.+|.+.|++++|+|+++.|+++    +.|++|+|||+.         ..+....+..|...|.+++|+|+++.
T Consensus        56 ~~~~~~l~gH~~~V~~~~~sp~~~~l~s~----s~D~~v~iWd~~---------~~~~~~~~~~h~~~v~~~~~s~~g~~  122 (380)
T 3iz6_a           56 LVCCRTLQGHSGKVYSLDWTPEKNWIVSA----SQDGRLIVWNAL---------TSQKTHAIKLHCPWVMECAFAPNGQS  122 (380)
T ss_dssp             CEEEEEECCCSSCEEEEEECTTSSCEEEE----ETTSEEEEEETT---------TTEEEEEEECCCTTCCCCEECTTSSE
T ss_pred             eEEeecccccccEEEEEEEcCCCCEEEEE----eCCCeEEEEECC---------CCccceEEecCCCCEEEEEECCCCCE
Confidence            34557788999999999999999998885    699999999998         67788889999999999999999984


Q ss_pred             cEEEEecCCeEEEEEcCCCCCCc--eeeecccCCCceeeEEEEeCCCC-CcEEEEecCCeEEEEEccCCCccceee----
Q 019059          135 DKLVSIDEENIFLWSLDCSNKNA--QVQSKQSSGMLHYLSGGAWDPHD-VNAVAATCESSVQFWDLRSMGKTNSIE----  207 (346)
Q Consensus       135 ~~~~~~~d~~i~vwd~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~----  207 (346)
                       +++++.|+.+++|++.+.....  ........+|...+.++.|.|++ ..+++++.|++|++||+++++.+..+.    
T Consensus       123 -las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~  201 (380)
T 3iz6_a          123 -VACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFP  201 (380)
T ss_dssp             -EEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSS
T ss_pred             -EEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccC
Confidence             6777889999999997532111  11112245678889999999975 468999999999999999998776552    


Q ss_pred             ccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          208 HAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       208 ~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      .+|   +.+++|++.+..++++|+.|+.|++||++....++..+.+|...|++++|+|++ .+|++++.|++|++||+++
T Consensus       202 ~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~lwd~~~  280 (380)
T 3iz6_a          202 SGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDG-QRFGTGSDDGTCRLFDMRT  280 (380)
T ss_dssp             SSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTS-SEEEEECSSSCEEEEETTT
T ss_pred             CCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCC-CeEEEEcCCCeEEEEECCC
Confidence            244   999999874334999999999999999986567888999999999999999999 9999999999999999998


Q ss_pred             CCCCCCCcccccCCccccccccccccccc-------cceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          285 SNHDELPSESLVESPNQRANSLLNSYSDY-------EDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                                         ++++..+..+       ...|++++|+|+++ +|++++.|+.|++||+.
T Consensus       281 -------------------~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~dg~i~vwd~~  328 (380)
T 3iz6_a          281 -------------------GHQLQVYNREPDRNDNELPIVTSVAFSISGR-LLFAGYSNGDCYVWDTL  328 (380)
T ss_dssp             -------------------TEEEEEECCCCSSSCCSSCSCSEEEECSSSS-EEEEECTTSCEEEEETT
T ss_pred             -------------------CcEEEEecccccccccccCceEEEEECCCCC-EEEEEECCCCEEEEECC
Confidence                               5555554432       23489999999997 89999999999999963

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.4e-39  Score=276.01  Aligned_cols=250  Identities=16%  Similarity=0.203  Sum_probs=210.6

Q ss_pred             EeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEE
Q 019059           58 CEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKL  137 (346)
Q Consensus        58 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  137 (346)
                      ...+.+|.+.|++++|+|+++.|+++    +.|++|++||..         ..+....+..|...|.+++|+|++.. ++
T Consensus        57 ~~~l~gH~~~V~~~~~s~d~~~l~s~----s~Dg~v~vWd~~---------~~~~~~~~~~~~~~v~~~~~sp~g~~-la  122 (354)
T 2pbi_B           57 RRTLKGHGNKVLCMDWCKDKRRIVSS----SQDGKVIVWDSF---------TTNKEHAVTMPCTWVMACAYAPSGCA-IA  122 (354)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEE----ETTSEEEEEETT---------TCCEEEEEECSSSCCCEEEECTTSSE-EE
T ss_pred             EEEecCCCCeEEEEEECCCCCEEEEE----eCCCeEEEEECC---------CCCcceEEecCCCCEEEEEECCCCCE-EE
Confidence            46678999999999999999888875    799999999987         56677778889999999999999994 77


Q ss_pred             EEecCCeEEEEEcCCCCCCce-eeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeE
Q 019059          138 VSIDEENIFLWSLDCSNKNAQ-VQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRN  213 (346)
Q Consensus       138 ~~~~d~~i~vwd~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~  213 (346)
                      +++.|+.+++|++........ ........|...+.+++|+|++..+++++.|++|++||+++++.+..+. +|   |.+
T Consensus       123 sg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~-~h~~~v~~  201 (354)
T 2pbi_B          123 CGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFH-GHGADVLC  201 (354)
T ss_dssp             EESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEE
T ss_pred             EeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc-CCCCCeEE
Confidence            778899999999875421110 0111123467789999999999999999999999999999999888876 45   999


Q ss_pred             EEeCCC--CCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCC
Q 019059          214 VDYDTK--KKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELP  291 (346)
Q Consensus       214 ~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  291 (346)
                      ++|+|+  +. +|++|+.||.|++||+++ ..++..+..|...|++++|+|++ .+|++++.|++|++||++.       
T Consensus       202 ~~~~~~~~g~-~l~sgs~Dg~v~~wd~~~-~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~v~lwd~~~-------  271 (354)
T 2pbi_B          202 LDLAPSETGN-TFVSGGCDKKAMVWDMRS-GQCVQAFETHESDVNSVRYYPSG-DAFASGSDDATCRLYDLRA-------  271 (354)
T ss_dssp             EEECCCSSCC-EEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTT-------
T ss_pred             EEEEeCCCCC-EEEEEeCCCeEEEEECCC-CcEEEEecCCCCCeEEEEEeCCC-CEEEEEeCCCeEEEEECCC-------
Confidence            999874  55 899999999999999998 56788899999999999999999 9999999999999999997       


Q ss_pred             cccccCCcccccccccccccc--ccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          292 SESLVESPNQRANSLLNSYSD--YEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                                  ...+..+..  +...+.+++|+|++. +|++++.|+.|++||+.
T Consensus       272 ------------~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~~g~~d~~i~vwd~~  314 (354)
T 2pbi_B          272 ------------DREVAIYSKESIIFGASSVDFSLSGR-LLFAGYNDYTINVWDVL  314 (354)
T ss_dssp             ------------TEEEEEECCTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEETT
T ss_pred             ------------CcEEEEEcCCCcccceeEEEEeCCCC-EEEEEECCCcEEEEECC
Confidence                        444444433  334689999999997 99999999999999974

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=5.4e-39  Score=273.04  Aligned_cols=267  Identities=17%  Similarity=0.289  Sum_probs=206.8

Q ss_pred             EEeeeecccc-ceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceee-eeeeccCCceEEEEeecCCCC
Q 019059           57 ICEGLFSHPN-EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERI-AALDAHVGKINCVLWWSSGRH  134 (346)
Q Consensus        57 ~~~~~~~h~~-~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~  134 (346)
                      ....+.+|++ .|++++|+|+++.|+++    +.|+.|+||++..       ...... ....+|...|.+++|+|++++
T Consensus         7 ~~~~~~~h~~~~v~~l~~sp~g~~las~----~~D~~i~iw~~~~-------~~~~~~~~~~~~h~~~v~~~~~sp~g~~   75 (345)
T 3fm0_A            7 LLGRVPAHPDSRCWFLAWNPAGTLLASC----GGDRRIRIWGTEG-------DSWICKSVLSEGHQRTVRKVAWSPCGNY   75 (345)
T ss_dssp             EEEEECCSTTSCEEEEEECTTSSCEEEE----ETTSCEEEEEEET-------TEEEEEEEECSSCSSCEEEEEECTTSSE
T ss_pred             EeeeecCCCCCcEEEEEECCCCCEEEEE----cCCCeEEEEEcCC-------CcceeeeeeccccCCcEEEEEECCCCCE
Confidence            3456778987 99999999999988885    6999999999872       111112 223689999999999999984


Q ss_pred             cEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccce--eeccc--
Q 019059          135 DKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNS--IEHAH--  210 (346)
Q Consensus       135 ~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--~~~~~--  210 (346)
                       +++++.|+.|++|++......   ......+|...|.+++|+|+++.|++++.|+.|++||++++.....  ...+|  
T Consensus        76 -l~s~s~D~~v~iw~~~~~~~~---~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~  151 (345)
T 3fm0_A           76 -LASASFDATTCIWKKNQDDFE---CVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQ  151 (345)
T ss_dssp             -EEEEETTSCEEEEEECCC-EE---EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCS
T ss_pred             -EEEEECCCcEEEEEccCCCeE---EEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCC
Confidence             777788999999999764321   1122346778999999999999999999999999999987754322  12244  


Q ss_pred             -eeEEEeCCCCCcEEEEecCCCeEEEEEcccCC-cceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCC
Q 019059          211 -VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK-APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHD  288 (346)
Q Consensus       211 -v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  288 (346)
                       |.+++|+|++. +|++++.|+.|++||.+... .+...+.+|...|++++|+|++ .+|++++.|++|+|||.......
T Consensus       152 ~v~~~~~~p~~~-~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g-~~l~s~s~D~~v~iW~~~~~~~~  229 (345)
T 3fm0_A          152 DVKHVVWHPSQE-LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSG-QRLASCSDDRTVRIWRQYLPGNE  229 (345)
T ss_dssp             CEEEEEECSSSS-CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEEECTTCT
T ss_pred             CeEEEEECCCCC-EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCC-CEEEEEeCCCeEEEeccccCCCC
Confidence             99999999998 89999999999999998632 2456788999999999999999 99999999999999998652211


Q ss_pred             CCCcccccCCcccccccccccccc-ccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          289 ELPSESLVESPNQRANSLLNSYSD-YEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      .....    ........++..+.+ |...|++++|+|++. .|++++.|+.|++|+++
T Consensus       230 ~~~~~----~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~i~vw~~~  282 (345)
T 3fm0_A          230 QGVAC----SGSDPSWKCICTLSGFHSRTIYDIAWCQLTG-ALATACGDDAIRVFQED  282 (345)
T ss_dssp             TCCCC----C---CEEEEEEEECSSCSSCEEEEEECTTTC-CEEEEETTSCEEEEEEC
T ss_pred             cccee----eccCCccceeEEecCCCCCcEEEEEEecCCC-EEEEEeCCCeEEEEEeC
Confidence            11000    000111234445554 888899999999997 89999999999999874

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.3e-39  Score=273.54  Aligned_cols=255  Identities=18%  Similarity=0.296  Sum_probs=197.4

Q ss_pred             eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecC--CCCcE
Q 019059           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSS--GRHDK  136 (346)
Q Consensus        59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~  136 (346)
                      ..+.+|.+.|++++|+|+++.|+++    +.|++|+|||+..       .....+..+.+|...|.+++|+++  ++ ++
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~~lasg----s~D~~v~lwd~~~-------~~~~~~~~l~gH~~~V~~v~~~~~~~~~-~l   74 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGTRLATC----SSDRSVKIFDVRN-------GGQILIADLRGHEGPVWQVAWAHPMYGN-IL   74 (316)
T ss_dssp             -------CCEEEEEECGGGCEEEEE----ETTTEEEEEEEET-------TEEEEEEEEECCSSCEEEEEECCGGGSS-CE
T ss_pred             eecccccCeEEEeeEcCCCCEEEEE----eCCCeEEEEEecC-------CCcEEEEEEcCCCccEEEEEeCCCCCCC-EE
Confidence            4456899999999999999988885    6999999999972       122456788999999999999863  55 47


Q ss_pred             EEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCC--CCcEEEEecCCeEEEEEccCCCcc--ceeeccc--
Q 019059          137 LVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPH--DVNAVAATCESSVQFWDLRSMGKT--NSIEHAH--  210 (346)
Q Consensus       137 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~--  210 (346)
                      ++++.|+.|++||++++......   ...+|...|.+++|+|+  +..+++++.|+.|++||++.+...  .....+|  
T Consensus        75 ~s~s~D~~v~iWd~~~~~~~~~~---~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~  151 (316)
T 3bg1_A           75 ASCSYDRKVIIWREENGTWEKSH---EHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTI  151 (316)
T ss_dssp             EEEETTSCEEEECCSSSCCCEEE---EECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSS
T ss_pred             EEEECCCEEEEEECCCCcceEEE---EccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccC
Confidence            88889999999999865322111   22457779999999998  778999999999999999876422  1222344  


Q ss_pred             -eeEEEeCCCC-----------------CcEEEEecCCCeEEEEEcccCC--cceeeecCCCcceEEEEeCCCC---CcE
Q 019059          211 -VRNVDYDTKK-----------------KHLLVTAADESGIHLWDLRMLK--APIQELPGHTHWTWAVCCNPEY---DGF  267 (346)
Q Consensus       211 -v~~~~~~~~~-----------------~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~v~~~~~~---~~~  267 (346)
                       +.+++|+|+.                 . +|++|+.|+.|++||++...  .++..+.+|...|.+++|+|++   ..+
T Consensus       152 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~  230 (316)
T 3bg1_A          152 GCNAVSWAPAVVPGSLIDHPSGQKPNYIK-RFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTST  230 (316)
T ss_dssp             CBCCCEECCCCCC------CCSCCCCCCC-BEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCE
T ss_pred             CcceEEEccccCCccccccccccCccccc-eEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCce
Confidence             8999999973                 4 79999999999999997532  3567788999999999999985   268


Q ss_pred             EEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          268 ILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       268 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      |++++.|++|+|||++.....               ......+..|...|++++|+|+++ +|++++.|+.|++|++.
T Consensus       231 las~s~D~~v~iw~~~~~~~~---------------~~~~~~~~~~~~~v~~v~~sp~g~-~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          231 IASCSQDGRVFIWTCDDASSN---------------TWSPKLLHKFNDVVWHVSWSITAN-ILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             EEEEETTCEEEEEECSSTTCC---------------CCBCCEEEECSSCEEEEEECTTTC-CEEEEESSSCEEEEEEC
T ss_pred             EEEEcCCCeEEEEEccCcccc---------------chhhhhhhcCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEEC
Confidence            999999999999998751100               011233456788999999999997 89999999999999964

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.1e-38  Score=295.45  Aligned_cols=288  Identities=16%  Similarity=0.272  Sum_probs=230.6

Q ss_pred             ccceeeEeeeccCCCCcc-eEEEeecccCCCCeEEEEEecCCCC--eEEEeeeeccccceEEeeecCCCCceEEEEeecC
Q 019059           12 LKYQARCISDVKADTDHT-SFLTGTLSLKEENEVHLLRLSSGGT--ELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTG   88 (346)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~   88 (346)
                      ++.+...|.++.++++.. .++.|    +.++.|++|++.....  ......+.+|...|.+++|+|+++.|+++    +
T Consensus       378 l~~H~~~V~~v~~~~~~~~~l~s~----s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sg----s  449 (694)
T 3dm0_A          378 MRAHTDMVTAIATPIDNADIIVSA----SRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSG----S  449 (694)
T ss_dssp             EECCSSCEEEEECCTTCCSEEEEE----ETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEE----E
T ss_pred             cccCCceeEEEEecCCCCCEEEEE----eCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEE----e
Confidence            445667788888877654 45555    4689999999976432  23456788999999999999999988885    6


Q ss_pred             CcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCc
Q 019059           89 ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGML  168 (346)
Q Consensus        89 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  168 (346)
                      .|+.|+|||+.         ....+..+.+|...|.+++|+|+++. +++++.|+.|++||.....  .........+|.
T Consensus       450 ~Dg~v~vwd~~---------~~~~~~~~~~h~~~v~~~~~s~~~~~-l~s~s~D~~i~iwd~~~~~--~~~~~~~~~~h~  517 (694)
T 3dm0_A          450 WDGELRLWDLA---------AGVSTRRFVGHTKDVLSVAFSLDNRQ-IVSASRDRTIKLWNTLGEC--KYTISEGGEGHR  517 (694)
T ss_dssp             TTSEEEEEETT---------TTEEEEEEECCSSCEEEEEECTTSSC-EEEEETTSCEEEECTTSCE--EEEECSSTTSCS
T ss_pred             CCCcEEEEECC---------CCcceeEEeCCCCCEEEEEEeCCCCE-EEEEeCCCEEEEEECCCCc--ceeeccCCCCCC
Confidence            99999999998         67788889999999999999999985 7788899999999986432  122222335677


Q ss_pred             eeeEEEEeCCCC--CcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCc
Q 019059          169 HYLSGGAWDPHD--VNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA  243 (346)
Q Consensus       169 ~~v~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  243 (346)
                      ..|.+++|+|++  ..+++++.|+.|++||+++++....+. +|   |++++|+|++. +|++++.|+.|++||+++ .+
T Consensus       518 ~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~-~h~~~v~~v~~spdg~-~l~sg~~Dg~i~iwd~~~-~~  594 (694)
T 3dm0_A          518 DWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA-GHTGYVSTVAVSPDGS-LCASGGKDGVVLLWDLAE-GK  594 (694)
T ss_dssp             SCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSS-EEEEEETTSBCEEEETTT-TE
T ss_pred             CcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEc-CCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCC-Cc
Confidence            889999999987  468999999999999999988877776 55   99999999998 999999999999999997 54


Q ss_pred             ceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccc------------
Q 019059          244 PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYS------------  311 (346)
Q Consensus       244 ~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  311 (346)
                      .+..+. +...|.+++|+|++ .+|++++ |+.|+|||+++                   +..+..+.            
T Consensus       595 ~~~~~~-~~~~v~~~~~sp~~-~~l~~~~-~~~i~iwd~~~-------------------~~~~~~~~~~~~~~~~~~~~  652 (694)
T 3dm0_A          595 KLYSLE-ANSVIHALCFSPNR-YWLCAAT-EHGIKIWDLES-------------------KSIVEDLKVDLKAEAEKADN  652 (694)
T ss_dssp             EEECCB-CSSCEEEEEECSSS-SEEEEEE-TTEEEEEETTT-------------------TEEEEEECCCCC--------
T ss_pred             eEEEec-CCCcEEEEEEcCCC-cEEEEEc-CCCEEEEECCC-------------------CCChhhhccccccccccccc
Confidence            666665 45689999999998 7777765 56799999987                   33332221            


Q ss_pred             -------cccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          312 -------DYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       312 -------~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                             .+.-.+++++|+|+++ +|++++.||.|++|++.
T Consensus       653 ~~~~~~~~~~~~~~~l~~spdg~-~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          653 SGPAATKRKVIYCTSLNWSADGS-TLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             --------CCCCEEEEEECTTSS-EEEEEETTSEEEEEEC-
T ss_pred             cccccCCceeEEeeeEEEcCCCC-EEEEEcCCCeEEEEecc
Confidence                   1222478999999997 89999999999999985

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.4e-38  Score=268.55  Aligned_cols=295  Identities=14%  Similarity=0.222  Sum_probs=245.9

Q ss_pred             CcceeeecccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEE
Q 019059            4 GSSGIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFST   83 (346)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~   83 (346)
                      |.......+..+...+..+.+++++..+++|.    .++.+.+|++....   ....+.+|.+.|.+++|+|+++.|+++
T Consensus        20 G~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~----~dg~i~vwd~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~s~   92 (369)
T 3zwl_B           20 GSHMKAIKLTGHERPLTQVKYNKEGDLLFSCS----KDSSASVWYSLNGE---RLGTLDGHTGTIWSIDVDCFTKYCVTG   92 (369)
T ss_dssp             CCSEEEEEEECCSSCEEEEEECTTSCEEEEEE----SSSCEEEEETTTCC---EEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             ccccccEEEEEeeceEEEEEEcCCCCEEEEEe----CCCEEEEEeCCCch---hhhhhhhcCCcEEEEEEcCCCCEEEEE
Confidence            44566667777788899999999998888874    57899999987643   345667899999999999999888875


Q ss_pred             EeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecC-----CeEEEEEcCCCCCCce
Q 019059           84 VFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDE-----ENIFLWSLDCSNKNAQ  158 (346)
Q Consensus        84 ~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d-----~~i~vwd~~~~~~~~~  158 (346)
                          +.|+.|++||+.         ..+.+..+. +...|.+++|+|+++. +++++.+     +.|++||+........
T Consensus        93 ----~~dg~i~iwd~~---------~~~~~~~~~-~~~~v~~~~~~~~~~~-l~~~~~~~~~~~g~i~~~d~~~~~~~~~  157 (369)
T 3zwl_B           93 ----SADYSIKLWDVS---------NGQCVATWK-SPVPVKRVEFSPCGNY-FLAILDNVMKNPGSINIYEIERDSATHE  157 (369)
T ss_dssp             ----ETTTEEEEEETT---------TCCEEEEEE-CSSCEEEEEECTTSSE-EEEEECCBTTBCCEEEEEEEEECTTTCC
T ss_pred             ----eCCCeEEEEECC---------CCcEEEEee-cCCCeEEEEEccCCCE-EEEecCCccCCCCEEEEEEecCCcccee
Confidence                689999999998         667777775 8889999999999994 6666667     9999999987654333


Q ss_pred             eeecc------cCCCce--eeEEEEeCCCCCcEEEEecCCeEEEEEccC-CCccceeeccc---eeEEEeCCCCCcEEEE
Q 019059          159 VQSKQ------SSGMLH--YLSGGAWDPHDVNAVAATCESSVQFWDLRS-MGKTNSIEHAH---VRNVDYDTKKKHLLVT  226 (346)
Q Consensus       159 ~~~~~------~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~---v~~~~~~~~~~~~l~~  226 (346)
                      .....      ...+..  .+.+++|+|+++.+++++.|+.|++||+++ .+....+. .|   |.+++|+|++. +|++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~~  235 (369)
T 3zwl_B          158 LTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSID-LHEKSISDMQFSPDLT-YFIT  235 (369)
T ss_dssp             EEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEE-CCSSCEEEEEECTTSS-EEEE
T ss_pred             ecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEe-cCCCceeEEEECCCCC-EEEE
Confidence            22211      112222  799999999999999999999999999998 55555555 33   99999999998 8999


Q ss_pred             ecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCC--------------eEEEEecCCCCCCCCCc
Q 019059          227 AADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDS--------------TVNLWLVSTSNHDELPS  292 (346)
Q Consensus       227 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~--------------~i~iwd~~~~~~~~~~~  292 (346)
                      ++.|+.|++||+++ ...+..+. +...+.+++|+|++ .++++++.++              .+++||...        
T Consensus       236 ~~~d~~i~v~d~~~-~~~~~~~~-~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~--------  304 (369)
T 3zwl_B          236 SSRDTNSFLVDVST-LQVLKKYE-TDCPLNTAVITPLK-EFIILGGGQEAKDVTTTSANEGKFEARFYHKIF--------  304 (369)
T ss_dssp             EETTSEEEEEETTT-CCEEEEEE-CSSCEEEEEECSSS-SEEEEEECCC-------------CEEEEEETTT--------
T ss_pred             ecCCceEEEEECCC-Cceeeeec-CCCCceeEEecCCC-ceEEEeecCCCceEEEEecCCCcceeEEEecCC--------
Confidence            99999999999997 44666666 78899999999999 9999999888              899999998        


Q ss_pred             ccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          293 ESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                                 ++++..+.+|...|++++|+|+++ +|++++.|+.|++|+++
T Consensus       305 -----------~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~v~iw~~~  345 (369)
T 3zwl_B          305 -----------EEEIGRVQGHFGPLNTVAISPQGT-SYASGGEDGFIRLHHFE  345 (369)
T ss_dssp             -----------CCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEEEC
T ss_pred             -----------CcchhheecccCcEEEEEECCCCC-EEEEEcCCCeEEEEECc
Confidence                       888889999999999999999997 99999999999999986

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=3.5e-38  Score=266.89  Aligned_cols=282  Identities=16%  Similarity=0.176  Sum_probs=232.2

Q ss_pred             eeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEee--eeccccceEEeeecCCCCceEEEEeecCCcceE
Q 019059           16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEG--LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGA   93 (346)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i   93 (346)
                      ...+..+.+++++..++.+.     ++.+.+|++...........  ..+|...|.+++|+|+++.++++    +.|+.|
T Consensus        51 ~~~v~~~~~~~~~~~l~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~~d~~i  121 (337)
T 1gxr_A           51 GEVVCAVTISNPTRHVYTGG-----KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVG----GEASTL  121 (337)
T ss_dssp             SSCCCEEEECSSSSEEEEEC-----BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEE----ESSSEE
T ss_pred             CCceEEEEEecCCcEEEEcC-----CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEE----cCCCcE
Confidence            34566677888888887763     68999999987543222222  23789999999999999888875    589999


Q ss_pred             EEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEE
Q 019059           94 AIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSG  173 (346)
Q Consensus        94 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~  173 (346)
                      ++|++..       ........+..|...|.+++|+|+++. +++++.|+.|++||+++++....+     ..|...+.+
T Consensus       122 ~~~d~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~v~~~d~~~~~~~~~~-----~~~~~~i~~  188 (337)
T 1gxr_A          122 SIWDLAA-------PTPRIKAELTSSAPACYALAISPDSKV-CFSCCSDGNIAVWDLHNQTLVRQF-----QGHTDGASC  188 (337)
T ss_dssp             EEEECCC-------C--EEEEEEECSSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTTEEEEEE-----CCCSSCEEE
T ss_pred             EEEECCC-------CCcceeeecccCCCceEEEEECCCCCE-EEEEeCCCcEEEEeCCCCceeeee-----ecccCceEE
Confidence            9999982       223366678889999999999999884 777788999999999865432222     346668999


Q ss_pred             EEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCC
Q 019059          174 GAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHT  252 (346)
Q Consensus       174 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  252 (346)
                      ++|+|+++.+++++.|+.|++||+++++....+.... +.+++|+|+++ .+++++.++.|++||++..  ....+..|.
T Consensus       189 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~i~~~~~~~~--~~~~~~~~~  265 (337)
T 1gxr_A          189 IDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGE-WLAVGMESSNVEVLHVNKP--DKYQLHLHE  265 (337)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSS-EEEEEETTSCEEEEETTSS--CEEEECCCS
T ss_pred             EEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCC--CeEEEcCCc
Confidence            9999999999999999999999999998877776444 99999999998 8999999999999999863  345677899


Q ss_pred             cceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEE
Q 019059          253 HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFAS  332 (346)
Q Consensus       253 ~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  332 (346)
                      ..|.+++|+|++ .+|++++.|+.|++||+..                   ++.+.. ..|...|.+++|+|+++ +|++
T Consensus       266 ~~v~~~~~~~~~-~~l~~~~~dg~i~~~~~~~-------------------~~~~~~-~~~~~~v~~~~~s~~~~-~l~~  323 (337)
T 1gxr_A          266 SCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPY-------------------GASIFQ-SKESSSVLSCDISVDDK-YIVT  323 (337)
T ss_dssp             SCEEEEEECTTS-SEEEEEETTSEEEEEETTT-------------------CCEEEE-EECSSCEEEEEECTTSC-EEEE
T ss_pred             cceeEEEECCCC-CEEEEecCCCcEEEEECCC-------------------CeEEEE-ecCCCcEEEEEECCCCC-EEEE
Confidence            999999999999 9999999999999999998                   555533 35778899999999997 8999


Q ss_pred             eecCCeEEEeee
Q 019059          333 LSYDGRVRNHML  344 (346)
Q Consensus       333 ~~~d~~v~vw~~  344 (346)
                      ++.|+.|++|++
T Consensus       324 ~~~dg~i~iw~~  335 (337)
T 1gxr_A          324 GSGDKKATVYEV  335 (337)
T ss_dssp             EETTSCEEEEEE
T ss_pred             ecCCCeEEEEEE
Confidence            999999999997

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.5e-38  Score=267.29  Aligned_cols=251  Identities=15%  Similarity=0.254  Sum_probs=205.4

Q ss_pred             EEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCc
Q 019059           56 LICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHD  135 (346)
Q Consensus        56 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  135 (346)
                      .....+.+|.+.|.+++|+|++..++++   ++.|++|++|++....    .....++..+.+|...|.+++|+|++++ 
T Consensus         8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s---~s~D~~v~~W~~~~~~----~~~~~~~~~~~~h~~~v~~~~~s~dg~~-   79 (319)
T 3frx_A            8 VLRGTLEGHNGWVTSLATSAGQPNLLLS---ASRDKTLISWKLTGDD----QKFGVPVRSFKGHSHIVQDCTLTADGAY-   79 (319)
T ss_dssp             EEEEEECCCSSCEEEEEECSSCTTEEEE---EETTSEEEEEEEEEET----TEEEEEEEEEECCSSCEEEEEECTTSSE-
T ss_pred             EEEEEEccccceEEEEEccCCCccEEEE---ecCCccEEEecCCCCC----ccccccceEEeCCcccEEEEEECCCCCE-
Confidence            3446788999999999999987555444   4799999999986211    1124567788999999999999999984 


Q ss_pred             EEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---ee
Q 019059          136 KLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VR  212 (346)
Q Consensus       136 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~  212 (346)
                      +++++.|+.|++||+.+++....+     .+|...|.+++|+|++..+++++.|+.|++||++. +++..+. +|   +.
T Consensus        80 l~s~s~D~~v~~wd~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~-~h~~~v~  152 (319)
T 3frx_A           80 ALSASWDKTLRLWDVATGETYQRF-----VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLL-GHNDWVS  152 (319)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEE-----ECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CEEEEEC-CCSSCEE
T ss_pred             EEEEeCCCEEEEEECCCCCeeEEE-----ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEe-ccCCcEE
Confidence            777789999999999876533322     35777999999999999999999999999999974 4444444 44   99


Q ss_pred             EEEeCCCCC-----cEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCC
Q 019059          213 NVDYDTKKK-----HLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNH  287 (346)
Q Consensus       213 ~~~~~~~~~-----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  287 (346)
                      +++|.|...     ..+++++.|+.|++||++. ......+.+|...|.+++|+|++ .+|++++.|+.|++||++.   
T Consensus       153 ~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~h~~~v~~~~~sp~g-~~l~s~~~dg~i~iwd~~~---  227 (319)
T 3frx_A          153 QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ-FQIEADFIGHNSNINTLTASPDG-TLIASAGKDGEIMLWNLAA---  227 (319)
T ss_dssp             EEEECCC------CCEEEEEETTSCEEEEETTT-TEEEEEECCCCSCEEEEEECTTS-SEEEEEETTCEEEEEETTT---
T ss_pred             EEEEccCCCCCCCccEEEEEeCCCEEEEEECCc-chhheeecCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCC---
Confidence            999998532     2799999999999999987 55777888999999999999999 9999999999999999998   


Q ss_pred             CCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          288 DELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                                      .+++..+..+ ..|.+++|+|++. +|++++ +..+++|+++
T Consensus       228 ----------------~~~~~~~~~~-~~v~~~~~sp~~~-~la~~~-~~~i~v~~~~  266 (319)
T 3frx_A          228 ----------------KKAMYTLSAQ-DEVFSLAFSPNRY-WLAAAT-ATGIKVFSLD  266 (319)
T ss_dssp             ----------------TEEEEEEECC-SCEEEEEECSSSS-EEEEEE-TTEEEEEEET
T ss_pred             ----------------CcEEEEecCC-CcEEEEEEcCCCC-EEEEEc-CCCcEEEEeC
Confidence                            7777777655 5699999999997 777666 4569999875

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-38  Score=268.95  Aligned_cols=258  Identities=17%  Similarity=0.256  Sum_probs=195.2

Q ss_pred             EeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeee-ec-cCCceEEEEeecCCCCc
Q 019059           58 CEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL-DA-HVGKINCVLWWSSGRHD  135 (346)
Q Consensus        58 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~-~~-~~~~i~~~~~~~~~~~~  135 (346)
                      ...+.+|.+.|++++|+|+  .|++    ++.|+.|++|++..       ........+ .. |...|.+++|+|+++ +
T Consensus         7 ~~~~~~h~~~v~~~~~s~~--~las----~~~D~~i~lw~~~~-------~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~   72 (330)
T 2hes_X            7 IKSLKLYKEKIWSFDFSQG--ILAT----GSTDRKIKLVSVKY-------DDFTLIDVLDETAHKKAIRSVAWRPHTS-L   72 (330)
T ss_dssp             EEEEECCSSCEEEEEEETT--EEEE----EESSSCEEEEECSS-------SCCEEEEEECTTCCCSCEEEEEECTTSS-E
T ss_pred             ceeeccCCCceeeeccCCC--EEEE----EcCCCEEEEEEecC-------CCeEEEEEEecCCccCCEEEEEECCCCC-E
Confidence            4567799999999999986  5555    47999999999972       122444445 34 999999999999998 4


Q ss_pred             EEEEecCCeEEEEEcCCCCCC--ceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCC-C---ccceeecc
Q 019059          136 KLVSIDEENIFLWSLDCSNKN--AQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSM-G---KTNSIEHA  209 (346)
Q Consensus       136 ~~~~~~d~~i~vwd~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~---~~~~~~~~  209 (346)
                      +++++.|+.|++||+......  .........+|...|.+++|+|++++|++++.|+.|++||++.. .   ++..+. +
T Consensus        73 las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~-~  151 (330)
T 2hes_X           73 LAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQ-E  151 (330)
T ss_dssp             EEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEEC-C
T ss_pred             EEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEec-c
Confidence            777788999999998643211  11112223568889999999999999999999999999999543 2   233333 4


Q ss_pred             c---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCC-cceeeecCCCcceEEEEeCCC--CCcEEEEecCCCeEEEEecC
Q 019059          210 H---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK-APIQELPGHTHWTWAVCCNPE--YDGFILSAGTDSTVNLWLVS  283 (346)
Q Consensus       210 ~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~v~~~~~--~~~~l~s~~~d~~i~iwd~~  283 (346)
                      |   |.+++|+|++. +|++++.|++|++||.+... .++..+.+|...|.+++|+|+  + .+|++++.|++|++||++
T Consensus       152 h~~~v~~v~~~p~~~-~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~s~D~~v~iw~~~  229 (330)
T 2hes_X          152 HSQDVKHVIWHPSEA-LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGV-FRLCSGSDDSTVRVWKYM  229 (330)
T ss_dssp             CSSCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSS-CEEEEEETTSCEEEEEEE
T ss_pred             CCCceEEEEECCCCC-EEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCe-eEEEEEeCCCeEEEEEec
Confidence            5   99999999998 89999999999999987532 467888999999999999998  5 789999999999999997


Q ss_pred             CCCCCCCCcccccCCcccccccccccccc-ccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          284 TSNHDELPSESLVESPNQRANSLLNSYSD-YEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      ......           .....+...+.+ |...|++++|++++  +|++++.|+.|++|++.
T Consensus       230 ~~~~~~-----------~~~~~~~~~~~~~h~~~v~~v~~s~~~--~l~s~~~dg~v~iw~~~  279 (330)
T 2hes_X          230 GDDEDD-----------QQEWVCEAILPDVHKRQVYNVAWGFNG--LIASVGADGVLAVYEEV  279 (330)
T ss_dssp             EECTTS-----------CEEEEEEEECCSCCSSCEEEEEECTTS--CEEEEETTSCEEEEEEE
T ss_pred             CCCccc-----------cceeEEeeecccccccceEEEEEcCCC--EEEEEeCCCEEEEEEcC
Confidence            621100           000133444544 88899999999764  68999999999999974

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.4e-38  Score=275.80  Aligned_cols=293  Identities=15%  Similarity=0.184  Sum_probs=235.5

Q ss_pred             ccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCC---eEEEeeeeccccceEEeeecCC----C---CceE
Q 019059           12 LKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGT---ELICEGLFSHPNEIWDLSSCPF----D---QRIF   81 (346)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~h~~~v~~~~~~~~----~---~~l~   81 (346)
                      +..+...|.++.+++  ..++.|.    .++.|.+|++.....   ......+.+|...|.+++|+|+    +   ..|+
T Consensus        12 ~~~h~~~i~~~~~~~--~~l~s~~----~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~   85 (397)
T 1sq9_A           12 GKAHDADIFSVSACN--SFTVSCS----GDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA   85 (397)
T ss_dssp             SSCSSSCEEEEEECS--SEEEEEE----TTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             hhhhhcCeEEEEecC--CeEEEEc----CCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEE
Confidence            344555677777776  5666663    678999999987641   1123556689999999999998    7   7777


Q ss_pred             EEEeecCCcceEEEEecCcccCCCCCcccee-----eeeeecc-----CCceEEEEee----cCCCCcEEEEecCCeEEE
Q 019059           82 STVFSTGESYGAAIWQIPELYGQLNSPQLER-----IAALDAH-----VGKINCVLWW----SSGRHDKLVSIDEENIFL  147 (346)
Q Consensus        82 ~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~-----~~~~~~~-----~~~i~~~~~~----~~~~~~~~~~~~d~~i~v  147 (346)
                      ++    +.|+.|++|++.         ..+.     ...+..|     ...|.+++|+    |+++.++++++.|+.|++
T Consensus        86 s~----~~dg~i~iw~~~---------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~i  152 (397)
T 1sq9_A           86 TT----SFSGDLLFYRIT---------REDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYI  152 (397)
T ss_dssp             EE----ETTSCEEEEEEE---------ECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEE
T ss_pred             EE----cCCCCEEEEEcc---------CCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEE
Confidence            75    589999999998         3343     6777788     5899999999    998832667788999999


Q ss_pred             EEcCC------CCCCc-----eeee--cccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeec------
Q 019059          148 WSLDC------SNKNA-----QVQS--KQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH------  208 (346)
Q Consensus       148 wd~~~------~~~~~-----~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~------  208 (346)
                      ||+.+      .....     .+..  .....|...+.+++|+|++ .+++++.|+.|++||+++++.+..+..      
T Consensus       153 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~  231 (397)
T 1sq9_A          153 WKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMIN  231 (397)
T ss_dssp             EEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---C
T ss_pred             EeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccc
Confidence            99987      44443     2221  0012356689999999999 999999999999999999988887774      


Q ss_pred             -cc-eeEEEeCCCCCcEEEEecCC---CeEEEEEcccCCcceeeecC-------------CCcceEEEEeCCCCCcEEEE
Q 019059          209 -AH-VRNVDYDTKKKHLLVTAADE---SGIHLWDLRMLKAPIQELPG-------------HTHWTWAVCCNPEYDGFILS  270 (346)
Q Consensus       209 -~~-v~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~-------------~~~~v~~v~~~~~~~~~l~s  270 (346)
                       .. +.+++|+|++. +|++++.|   +.|++||+++ ..++..+..             |...|.+++|+|++ .+|++
T Consensus       232 ~~~~i~~i~~~~~~~-~l~~~~~d~~~g~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~  308 (397)
T 1sq9_A          232 NSNSIRSVKFSPQGS-LLAIAHDSNSFGCITLYETEF-GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG-ETLCS  308 (397)
T ss_dssp             CCCCEEEEEECSSTT-EEEEEEEETTEEEEEEEETTT-CCEEEEECBC--------CCBSBSSCEEEEEECSSS-SEEEE
T ss_pred             cCCccceEEECCCCC-EEEEEecCCCCceEEEEECCC-CcccceeccCcccccccccccccCCcEEEEEECCCC-CEEEE
Confidence             33 99999999998 89999999   9999999997 557888888             99999999999999 99999


Q ss_pred             ecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccc------cc---------------cceeeEEEeCCCCC--
Q 019059          271 AGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYS------DY---------------EDSVYGLAWSSREP--  327 (346)
Q Consensus       271 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~---------------~~~v~~~~~~~~~~--  327 (346)
                      ++.|+.|++||++.                   ++++..+.      +|               ...|++++|+|+++  
T Consensus       309 ~~~dg~i~iwd~~~-------------------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~  369 (397)
T 1sq9_A          309 AGWDGKLRFWDVKT-------------------KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRS  369 (397)
T ss_dssp             EETTSEEEEEETTT-------------------TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSB
T ss_pred             EeCCCeEEEEEcCC-------------------CceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccc
Confidence            99999999999998                   66777776      66               88999999999982  


Q ss_pred             -------cEEEEeecCCeEEEeeecC
Q 019059          328 -------WIFASLSYDGRVRNHMLEK  346 (346)
Q Consensus       328 -------~~l~s~~~d~~v~vw~~~~  346 (346)
                             .+|++++.|+.|++|++++
T Consensus       370 ~~~~~~~~~l~s~~~dg~i~iw~~~~  395 (397)
T 1sq9_A          370 GMGADLNESLCCVCLDRSIRWFREAG  395 (397)
T ss_dssp             STTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred             cccccccceEEEecCCCcEEEEEcCC
Confidence                   3899999999999999863

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.1e-38  Score=265.84  Aligned_cols=246  Identities=20%  Similarity=0.289  Sum_probs=208.1

Q ss_pred             EEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcE
Q 019059           57 ICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDK  136 (346)
Q Consensus        57 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  136 (346)
                      ....+.+|.+.|.+++|+|+++.|+++    +.|+.|++|++.         ..+....+..|...|.+++|+|+++ .+
T Consensus        15 ~~~~~~gh~~~v~~~~~s~~~~~l~s~----~~dg~i~iw~~~---------~~~~~~~~~~h~~~v~~~~~~~~~~-~l   80 (312)
T 4ery_A           15 LKFTLAGHTKAVSSVKFSPNGEWLASS----SADKLIKIWGAY---------DGKFEKTISGHKLGISDVAWSSDSN-LL   80 (312)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEE----ETTSCEEEEETT---------TCCEEEEECCCSSCEEEEEECTTSS-EE
T ss_pred             eEEEEcccCCcEEEEEECCCCCEEEEe----eCCCeEEEEeCC---------CcccchhhccCCCceEEEEEcCCCC-EE
Confidence            346678999999999999999988885    689999999997         5677788889999999999999998 47


Q ss_pred             EEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeE
Q 019059          137 LVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRN  213 (346)
Q Consensus       137 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~  213 (346)
                      ++++.|+.|++||+.+++....+     .+|...+.+++|+|+++.+++++.|+.|++||+++++....+. .|   +.+
T Consensus        81 ~s~~~d~~i~vwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~  154 (312)
T 4ery_A           81 VSASDDKTLKIWDVSSGKCLKTL-----KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP-AHSDPVSA  154 (312)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEE-----ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEE
T ss_pred             EEECCCCEEEEEECCCCcEEEEE-----cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEec-CCCCcEEE
Confidence            77788999999999876543332     3466689999999999999999999999999999998877776 34   999


Q ss_pred             EEeCCCCCcEEEEecCCCeEEEEEcccCCcceeee-cCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCc
Q 019059          214 VDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL-PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPS  292 (346)
Q Consensus       214 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  292 (346)
                      ++|+|++. ++++++.|+.|++||+++. ..+..+ ..+...+..++|+|++ .+|++++.|+.|++||++.        
T Consensus       155 ~~~~~~~~-~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~--------  223 (312)
T 4ery_A          155 VHFNRDGS-LIVSSSYDGLCRIWDTASG-QCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDNTLKLWDYSK--------  223 (312)
T ss_dssp             EEECTTSS-EEEEEETTSCEEEEETTTC-CEEEEECCSSCCCEEEEEECTTS-SEEEEEETTTEEEEEETTT--------
T ss_pred             EEEcCCCC-EEEEEeCCCcEEEEECCCC-ceeeEEeccCCCceEEEEECCCC-CEEEEEcCCCeEEEEECCC--------
Confidence            99999998 8999999999999999974 445544 4566789999999999 9999999999999999998        


Q ss_pred             ccccCCccccccccccccccccceeeE--EEeC-CCCCcEEEEeecCCeEEEeeec
Q 019059          293 ESLVESPNQRANSLLNSYSDYEDSVYG--LAWS-SREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~-~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                                 ++++..+.+|...+..  ..++ +++. +|++++.|+.|++||++
T Consensus       224 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sg~~dg~i~vwd~~  267 (312)
T 4ery_A          224 -----------GKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNLQ  267 (312)
T ss_dssp             -----------TEEEEEECSSCCSSSCCCEEEECSSSC-EEEECCTTSCEEEEETT
T ss_pred             -----------CcEEEEEEecCCceEEEEEEEEeCCCc-EEEEECCCCEEEEEECC
Confidence                       7778888777654332  3444 4554 89999999999999985

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=5.5e-38  Score=285.06  Aligned_cols=275  Identities=21%  Similarity=0.376  Sum_probs=230.5

Q ss_pred             eeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEE
Q 019059           15 QARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAA   94 (346)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~   94 (346)
                      +...+..+.+.+++..++.++    .++.+++|+....    ....+.+|...|.+++|+|+++.++++    +.|+.|+
T Consensus       261 ~~~~v~~v~~~~d~~~l~~~~----~d~~i~~w~~~~~----~~~~~~~h~~~v~~~~~~~~~~~l~t~----~~d~~i~  328 (577)
T 2ymu_A          261 HSSSVNGVAFRPDGQTIASAS----DDKTVKLWNRNGQ----LLQTLTGHSSSVWGVAFSPDGQTIASA----SDDKTVK  328 (577)
T ss_dssp             CSSCEEEEEECTTSSEEEEEE----TTSCEEEEETTSC----EEEEECCCSSCEEEEEECTTSSEEEEE----ETTSCEE
T ss_pred             CCCCEEEEEEcCCCCEEEEEe----CCCEEEEEeCCCc----EEEEEecCCCCeEEEEECCCCCEEEEE----eCCCeEE
Confidence            344566677788888887764    5678999985432    335677899999999999999988875    5899999


Q ss_pred             EEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEE
Q 019059           95 IWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGG  174 (346)
Q Consensus        95 vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~  174 (346)
                      +||+.          ...+..+..|...|.+++|+|+++. +++++.|+.|++||.. ++....     ..+|...|.++
T Consensus       329 ~w~~~----------~~~~~~~~~~~~~v~~~~~s~~g~~-l~~~~~dg~v~~~~~~-~~~~~~-----~~~~~~~v~~~  391 (577)
T 2ymu_A          329 LWNRN----------GQHLQTLTGHSSSVWGVAFSPDGQT-IASASDDKTVKLWNRN-GQLLQT-----LTGHSSSVRGV  391 (577)
T ss_dssp             EEETT----------SCEEEEECCCSSCEEEEEECTTSSE-EEEEETTSEEEEEETT-CCEEEE-----EECCSSCEEEE
T ss_pred             EEeCC----------CCeeEEEeCCCCCEEEEEECCCCCE-EEEEeCCCEEEEEcCC-CCEEEE-----ecCCCCCeEEE
Confidence            99986          3455677899999999999999994 6677889999999964 222111     23466789999


Q ss_pred             EeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCC
Q 019059          175 AWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGH  251 (346)
Q Consensus       175 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  251 (346)
                      +|+|+++.+++++.|+.|++||. +++....+. +|   |.+++|+|++. ++++++.|+.|++||..  .+.+..+.+|
T Consensus       392 ~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~-~~~~~v~~~~~s~d~~-~l~~~~~d~~v~~w~~~--~~~~~~~~~~  466 (577)
T 2ymu_A          392 AFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVWGVAFSPDDQ-TIASASDDKTVKLWNRN--GQLLQTLTGH  466 (577)
T ss_dssp             EECTTSSCEEEEETTSEEEEECT-TCCEEEEEE-CCSSCEEEEEECTTSS-EEEEEETTSEEEEEETT--SCEEEEEECC
T ss_pred             EECCCCCEEEEEeCCCEEEEEeC-CCCEEEEec-CCCCCeEEEEECCCCC-EEEEEcCCCEEEEEECC--CCEEEEEcCC
Confidence            99999999999999999999995 455555555 44   99999999998 89999999999999975  4578888999


Q ss_pred             CcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEE
Q 019059          252 THWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFA  331 (346)
Q Consensus       252 ~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  331 (346)
                      ...|++++|+|++ .+|++++.|+.|++||..                    ++++..+.+|...|++++|+|+++ +|+
T Consensus       467 ~~~v~~~~~spd~-~~las~~~d~~i~iw~~~--------------------~~~~~~~~~h~~~v~~l~~s~dg~-~l~  524 (577)
T 2ymu_A          467 SSSVRGVAFSPDG-QTIASASDDKTVKLWNRN--------------------GQLLQTLTGHSSSVRGVAFSPDGQ-TIA  524 (577)
T ss_dssp             SSCEEEEEECTTS-CEEEEEETTSEEEEEETT--------------------SCEEEEEECCSSCEEEEEECTTSS-CEE
T ss_pred             CCCEEEEEEcCCC-CEEEEEeCCCEEEEEcCC--------------------CCEEEEEeCCCCCEEEEEEcCCCC-EEE
Confidence            9999999999999 999999999999999964                    578888999999999999999997 899


Q ss_pred             EeecCCeEEEeeec
Q 019059          332 SLSYDGRVRNHMLE  345 (346)
Q Consensus       332 s~~~d~~v~vw~~~  345 (346)
                      +++.|+.|++||.+
T Consensus       525 s~~~dg~v~lwd~~  538 (577)
T 2ymu_A          525 SASDDKTVKLWNRN  538 (577)
T ss_dssp             EEETTSEEEEECTT
T ss_pred             EEECcCEEEEEeCC
Confidence            99999999999965

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-38  Score=276.69  Aligned_cols=305  Identities=15%  Similarity=0.152  Sum_probs=234.0

Q ss_pred             eEeeeccCCCCcc-eEEEeecccCCCCeEEEEEe----cCCCC--eE-EEeeeec----------cccceEEeeecCCCC
Q 019059           17 RCISDVKADTDHT-SFLTGTLSLKEENEVHLLRL----SSGGT--EL-ICEGLFS----------HPNEIWDLSSCPFDQ   78 (346)
Q Consensus        17 ~~~~~~~~~~~~~-~~~~g~~~~~~~~~i~~~~~----~~~~~--~~-~~~~~~~----------h~~~v~~~~~~~~~~   78 (346)
                      ..+.++.+++++. .+++|.    .++.+.+|++    .....  .+ ....+..          |.+.|.+++|+|+++
T Consensus        46 ~~v~~~~~s~~~~~~l~~~~----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  121 (425)
T 1r5m_A           46 DNIVSSTWNPLDESILAYGE----KNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN  121 (425)
T ss_dssp             SCCSEEEECSSCTTEEEEEE----TBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred             CceEEEEECCCCCcEEEEec----CCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence            4677788889888 888774    5789999999    54431  00 1112222          678999999999998


Q ss_pred             ceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCce
Q 019059           79 RIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQ  158 (346)
Q Consensus        79 ~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~  158 (346)
                      .|+++    +.|+.|++|+.          ..+.+..+..|...|.+++|+|+++. +++++.|+.|++||+.+++....
T Consensus       122 ~l~~~----~~dg~i~i~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~  186 (425)
T 1r5m_A          122 SIVTG----VENGELRLWNK----------TGALLNVLNFHRAPIVSVKWNKDGTH-IISMDVENVTILWNVISGTVMQH  186 (425)
T ss_dssp             EEEEE----ETTSCEEEEET----------TSCEEEEECCCCSCEEEEEECTTSSE-EEEEETTCCEEEEETTTTEEEEE
T ss_pred             EEEEE----eCCCeEEEEeC----------CCCeeeeccCCCccEEEEEECCCCCE-EEEEecCCeEEEEECCCCcEEEE
Confidence            88885    58999999994          45777888899999999999999984 67778899999999976542221


Q ss_pred             eee---------------------------------------------------cccCCCceeeEEEEeCCCCCcEEEEe
Q 019059          159 VQS---------------------------------------------------KQSSGMLHYLSGGAWDPHDVNAVAAT  187 (346)
Q Consensus       159 ~~~---------------------------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~  187 (346)
                      +..                                                   .....|...+.+++|+|+++.+++++
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  266 (425)
T 1r5m_A          187 FELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSAS  266 (425)
T ss_dssp             ECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEE
T ss_pred             eeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEc
Confidence            110                                                   01224667899999999999999999


Q ss_pred             cCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCC
Q 019059          188 CESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEY  264 (346)
Q Consensus       188 ~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~  264 (346)
                      .|+.|++||+++++....+. .|   +.+++|+|++  .+++++.|+.|++||+++ ..++..+..|...|.+++|+|++
T Consensus       267 ~d~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~s~~~  342 (425)
T 1r5m_A          267 DDGTLRIWHGGNGNSQNCFY-GHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQ-NTLLALSIVDGVPIFAGRISQDG  342 (425)
T ss_dssp             TTSCEEEECSSSBSCSEEEC-CCSSCEEEEEEETTT--EEEEEETTSEEEEEETTT-TEEEEEEECTTCCEEEEEECTTS
T ss_pred             CCCEEEEEECCCCccceEec-CCCccEEEEEECCCC--EEEEEeCCCcEEEEECCC-CcEeEecccCCccEEEEEEcCCC
Confidence            99999999999988887775 33   9999999988  788999999999999987 55788888999999999999999


Q ss_pred             CcEEEEecCCCeEEEEecCCCCCCCCCcc-cccCCccccccccccccccccc--eeeEEEeCCCCCcEEEEeecCCeEEE
Q 019059          265 DGFILSAGTDSTVNLWLVSTSNHDELPSE-SLVESPNQRANSLLNSYSDYED--SVYGLAWSSREPWIFASLSYDGRVRN  341 (346)
Q Consensus       265 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~d~~v~v  341 (346)
                       .+|++++.|+.|++||++.......... ...........+++..+.+|..  .|++++|+|+++ +|++++.|+.|++
T Consensus       343 -~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i  420 (425)
T 1r5m_A          343 -QKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGN-KISVAYSLQEGSV  420 (425)
T ss_dssp             -SEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSS-EEEEEESSSCCEE
T ss_pred             -CEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCc-eEEEEecCceEEE
Confidence             9999999999999999987211000000 0000000011226778888866  899999999997 8999999999999


Q ss_pred             eeecC
Q 019059          342 HMLEK  346 (346)
Q Consensus       342 w~~~~  346 (346)
                      |++++
T Consensus       421 w~~~g  425 (425)
T 1r5m_A          421 VAIPG  425 (425)
T ss_dssp             EECCC
T ss_pred             EeecC
Confidence            99975

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=3.5e-37  Score=261.30  Aligned_cols=297  Identities=16%  Similarity=0.209  Sum_probs=231.3

Q ss_pred             ecccceeeEeeeccCCCCc-ceEEEeecccCCCCeEEEEEecCCC--CeEEEeeeeccccceEEeeecCCCCceEEEEee
Q 019059           10 YGLKYQARCISDVKADTDH-TSFLTGTLSLKEENEVHLLRLSSGG--TELICEGLFSHPNEIWDLSSCPFDQRIFSTVFS   86 (346)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~   86 (346)
                      ..|+.+..+|.++.++|+. ..++.|    +.|+.|.+|++....  .......+.+|...|.+++|+|+++.|+++   
T Consensus        32 ~tL~GH~~~V~~v~~sp~~~~~l~S~----s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~---  104 (340)
T 4aow_A           32 GTLKGHNGWVTQIATTPQFPDMILSA----SRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSG---  104 (340)
T ss_dssp             EEECCCSSCEEEEEECTTCTTEEEEE----ETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEE---
T ss_pred             EEECCccCCEEEEEEeCCCCCEEEEE----cCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEE---
Confidence            3456677788999999875 455555    468999999998653  234456778999999999999999988885   


Q ss_pred             cCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCC
Q 019059           87 TGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG  166 (346)
Q Consensus        87 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~  166 (346)
                       +.|+.|++|+..         ..........+...+..+.+++++.. +++++.|+.+++||+....    .......+
T Consensus       105 -~~d~~i~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~-l~s~s~d~~~~~~d~~~~~----~~~~~~~~  169 (340)
T 4aow_A          105 -SWDGTLRLWDLT---------TGTTTRRFVGHTKDVLSVAFSSDNRQ-IVSGSRDKTIKLWNTLGVC----KYTVQDES  169 (340)
T ss_dssp             -ETTSEEEEEETT---------TTEEEEEEECCSSCEEEEEECTTSSC-EEEEETTSCEEEECTTSCE----EEEECSSS
T ss_pred             -cccccceEEeec---------ccceeeeecCCCCceeEEEEeecCcc-ceeecCCCeEEEEEeCCCc----eEEEEecc
Confidence             699999999998         56666677788889999999999885 7777889999999987432    22223345


Q ss_pred             CceeeEEEEeCCCCC--cEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccC
Q 019059          167 MLHYLSGGAWDPHDV--NAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRML  241 (346)
Q Consensus       167 ~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  241 (346)
                      |...+..++|++++.  .+++++.|+.|++||+++++....+. +|   |++++|+|+++ +|++++.|+.|++||++. 
T Consensus       170 ~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~-~h~~~v~~~~~s~~~~-~l~s~s~Dg~i~iwd~~~-  246 (340)
T 4aow_A          170 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI-GHTGYLNTVTVSPDGS-LCASGGKDGQAMLWDLNE-  246 (340)
T ss_dssp             CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSS-EEEEEETTCEEEEEETTT-
T ss_pred             ccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEec-CCCCcEEEEEECCCCC-EEEEEeCCCeEEEEEecc-
Confidence            677899999988754  46778889999999999998877776 45   99999999998 899999999999999997 


Q ss_pred             CcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEE
Q 019059          242 KAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLA  321 (346)
Q Consensus       242 ~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  321 (346)
                      ..++..+. +...+.++.|+|++ . +++++.|+.|++||++.......          ...........+|...|++++
T Consensus       247 ~~~~~~~~-~~~~v~~~~~~~~~-~-~~~~~~d~~i~iwd~~~~~~~~~----------~~~~~~~~~~~~h~~~v~~l~  313 (340)
T 4aow_A          247 GKHLYTLD-GGDIINALCFSPNR-Y-WLCAATGPSIKIWDLEGKIIVDE----------LKQEVISTSSKAEPPQCTSLA  313 (340)
T ss_dssp             TEEEEEEE-CSSCEEEEEECSSS-S-EEEEEETTEEEEEETTTTEEEEE----------ECCC-------CCCCCEEEEE
T ss_pred             Cceeeeec-CCceEEeeecCCCC-c-eeeccCCCEEEEEECCCCeEEEe----------ccccceeeeccCCCCCEEEEE
Confidence            55677776 45689999999987 5 55666799999999986100000          000111223446888999999


Q ss_pred             eCCCCCcEEEEeecCCeEEEeeec
Q 019059          322 WSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       322 ~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      |+|+++ +|++++.||.|+||+++
T Consensus       314 ~s~dg~-~l~sgs~Dg~v~iW~~~  336 (340)
T 4aow_A          314 WSADGQ-TLFAGYTDNLVRVWQVT  336 (340)
T ss_dssp             ECTTSS-EEEEEETTSCEEEEEEE
T ss_pred             ECCCCC-EEEEEeCCCEEEEEeCC
Confidence            999997 89999999999999986

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.4e-38  Score=273.84  Aligned_cols=255  Identities=15%  Similarity=0.218  Sum_probs=201.4

Q ss_pred             eeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccC------------------C
Q 019059           60 GLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV------------------G  121 (346)
Q Consensus        60 ~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~------------------~  121 (346)
                      ...+|.+.|.+++|+|++++|+++     .++.+++|++.         .++.+..+..|.                  .
T Consensus        59 ~~~~h~~~V~~v~fspdg~~la~g-----~~~~v~i~~~~---------~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  124 (393)
T 1erj_A           59 KSLDHTSVVCCVKFSNDGEYLATG-----CNKTTQVYRVS---------DGSLVARLSDDSAANKDPENLNTSSSPSSDL  124 (393)
T ss_dssp             EEEECSSCCCEEEECTTSSEEEEE-----CBSCEEEEETT---------TCCEEEEECC-----------------CCCC
T ss_pred             EecCCCCEEEEEEECCCCCEEEEE-----cCCcEEEEEec---------CCCEEEEecCccccccccccccccccCCCce
Confidence            344799999999999999988774     46799999997         455555554332                  2


Q ss_pred             ceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCC
Q 019059          122 KINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG  201 (346)
Q Consensus       122 ~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  201 (346)
                      .|.+++|+|+++. +++++.|+.|++||+.+++...     ...+|...|.+++|+|++..+++++.|+.|++||+++++
T Consensus       125 ~v~~v~~s~dg~~-l~s~~~d~~i~iwd~~~~~~~~-----~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~  198 (393)
T 1erj_A          125 YIRSVCFSPDGKF-LATGAEDRLIRIWDIENRKIVM-----ILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ  198 (393)
T ss_dssp             BEEEEEECTTSSE-EEEEETTSCEEEEETTTTEEEE-----EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             eEEEEEECCCCCE-EEEEcCCCeEEEEECCCCcEEE-----EEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe
Confidence            4999999999984 7777889999999998654222     224577799999999999999999999999999999998


Q ss_pred             ccceeeccc-eeEEEeCC-CCCcEEEEecCCCeEEEEEcccCCcceeee-------cCCCcceEEEEeCCCCCcEEEEec
Q 019059          202 KTNSIEHAH-VRNVDYDT-KKKHLLVTAADESGIHLWDLRMLKAPIQEL-------PGHTHWTWAVCCNPEYDGFILSAG  272 (346)
Q Consensus       202 ~~~~~~~~~-v~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~~v~~v~~~~~~~~~l~s~~  272 (346)
                      +...+.... +.+++|+| ++. ++++++.|+.|++||+++ ...+..+       .+|...|.+++|+|++ .+|++++
T Consensus       199 ~~~~~~~~~~v~~~~~~~~~~~-~l~~~s~d~~v~iwd~~~-~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g-~~l~s~s  275 (393)
T 1erj_A          199 CSLTLSIEDGVTTVAVSPGDGK-YIAAGSLDRAVRVWDSET-GFLVERLDSENESGTGHKDSVYSVVFTRDG-QSVVSGS  275 (393)
T ss_dssp             EEEEEECSSCEEEEEECSTTCC-EEEEEETTSCEEEEETTT-CCEEEEEC------CCCSSCEEEEEECTTS-SEEEEEE
T ss_pred             eEEEEEcCCCcEEEEEECCCCC-EEEEEcCCCcEEEEECCC-CcEEEeecccccCCCCCCCCEEEEEECCCC-CEEEEEe
Confidence            877776444 99999999 666 899999999999999987 4455544       5789999999999999 9999999


Q ss_pred             CCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          273 TDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       273 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      .|+.|++||++........       .....+.+...+.+|...|.+++|+|++. +|++++.|+.|++||++
T Consensus       276 ~d~~v~~wd~~~~~~~~~~-------~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~iwd~~  340 (393)
T 1erj_A          276 LDRSVKLWNLQNANNKSDS-------KTPNSGTCEVTYIGHKDFVLSVATTQNDE-YILSGSKDRGVLFWDKK  340 (393)
T ss_dssp             TTSEEEEEEC----------------------CEEEEEECCSSCEEEEEECGGGC-EEEEEETTSEEEEEETT
T ss_pred             CCCEEEEEECCCCCCcccc-------cCCCCCcceEEEecccCcEEEEEECCCCC-EEEEEeCCCeEEEEECC
Confidence            9999999999862211000       00011345566778999999999999997 89999999999999975

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2.4e-38  Score=271.05  Aligned_cols=288  Identities=12%  Similarity=0.152  Sum_probs=225.3

Q ss_pred             eeeEeeeccCCCC----cceEEEeecccCCCCeEEEEEecCCCCeEEEeeee--ccccceEEeeecCC----CCceEEEE
Q 019059           15 QARCISDVKADTD----HTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLF--SHPNEIWDLSSCPF----DQRIFSTV   84 (346)
Q Consensus        15 ~~~~~~~~~~~~~----~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~----~~~l~~~~   84 (346)
                      +...|..+.++|+    ...++++.    .++.+.+|++...+.........  .|...|.+++|+|+    ++.|+++ 
T Consensus        17 h~~~v~~i~~~p~~~~~~~~~~~~~----~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~-   91 (366)
T 3k26_A           17 HNQPLFGVQFNWHSKEGDPLVFATV----GSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA-   91 (366)
T ss_dssp             TCSCEEEEEECTTCCTTSCEEEEEE----ETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE-
T ss_pred             CCCceEEEEEecccCCCCceEEEEC----CCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe-
Confidence            4556777777763    33344432    35689999998654433333222  36788999999998    4456664 


Q ss_pred             eecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeec-CCCCcEEEEecCCeEEEEEcCCCCCCceeeecc
Q 019059           85 FSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWS-SGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQ  163 (346)
Q Consensus        85 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~  163 (346)
                         +.|+.|++||+.         ..+.+..+..|...|.+++|+| ++. ++++++.|+.|++||+.+++....+  ..
T Consensus        92 ---~~dg~i~v~d~~---------~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~--~~  156 (366)
T 3k26_A           92 ---GSRGIIRIINPI---------TMQCIKHYVGHGNAINELKFHPRDPN-LLLSVSKDHALRLWNIQTDTLVAIF--GG  156 (366)
T ss_dssp             ---ETTCEEEEECTT---------TCCEEEEEESCCSCEEEEEECSSCTT-EEEEEETTSCEEEEETTTTEEEEEE--CS
T ss_pred             ---cCCCEEEEEEch---------hceEeeeecCCCCcEEEEEECCCCCC-EEEEEeCCCeEEEEEeecCeEEEEe--cc
Confidence               689999999998         6778888989999999999999 555 5777788999999999866432222  11


Q ss_pred             cCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeec---------------------------cc---eeE
Q 019059          164 SSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH---------------------------AH---VRN  213 (346)
Q Consensus       164 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---------------------------~~---v~~  213 (346)
                      ...|...+.+++|+|++..+++++.|+.|++||+++++....+..                           .|   |.+
T Consensus       157 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  236 (366)
T 3k26_A          157 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDC  236 (366)
T ss_dssp             TTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCE
T ss_pred             cccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEE
Confidence            235677999999999999999999999999999998765443321                           13   999


Q ss_pred             EEeCCCCCcEEEEecCCCeEEEEEcccCCc-------------ceeeecCCCcceEEEEeCCC--CCcEEEEecCCCeEE
Q 019059          214 VDYDTKKKHLLVTAADESGIHLWDLRMLKA-------------PIQELPGHTHWTWAVCCNPE--YDGFILSAGTDSTVN  278 (346)
Q Consensus       214 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------------~~~~~~~~~~~v~~v~~~~~--~~~~l~s~~~d~~i~  278 (346)
                      ++|+  ++ ++++++.|+.|++||+++...             .+..+..|...|++++|+|+  + .+|++++.||.|+
T Consensus       237 ~~~~--~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-~~l~~~~~dg~i~  312 (366)
T 3k26_A          237 VRWL--GD-LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQ-KMLALGNQVGKLY  312 (366)
T ss_dssp             EEEE--TT-EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTS-SEEEEECTTSCEE
T ss_pred             EEEc--CC-EEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCC-cEEEEEecCCcEE
Confidence            9998  55 899999999999999986432             36677789999999999999  8 9999999999999


Q ss_pred             EEecCCCCCCCCCcccccCCccccccccc----cccccc--cceeeEEEeCCCCCcEEEEeecCCeEEEeeecC
Q 019059          279 LWLVSTSNHDELPSESLVESPNQRANSLL----NSYSDY--EDSVYGLAWSSREPWIFASLSYDGRVRNHMLEK  346 (346)
Q Consensus       279 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~~  346 (346)
                      +||++.                   +++.    ..+.+|  ...|++++|+|+++ +|++++.||.|++||+.+
T Consensus       313 vwd~~~-------------------~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          313 VWDLEV-------------------EDPHKAKCTTLTHHKCGAAIRQTSFSRDSS-ILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             EEECCS-------------------SSGGGCEEEEECCTTCCSCEEEEEECTTSS-EEEEEETTSEEEEEEC--
T ss_pred             EEECCC-------------------CCCccccceEEcccccCCceEEEEeCCCCC-eEEEEeCCCEEEEEEecC
Confidence            999997                   4433    366666  68899999999997 899999999999999863

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=4.4e-39  Score=275.38  Aligned_cols=291  Identities=10%  Similarity=0.023  Sum_probs=216.3

Q ss_pred             eeeccCCCCcceEEEeecc---cCCCCeEEEEEecCCCCe-------EEEeeeeccccceEEeeecCCCCceEEEEee--
Q 019059           19 ISDVKADTDHTSFLTGTLS---LKEENEVHLLRLSSGGTE-------LICEGLFSHPNEIWDLSSCPFDQRIFSTVFS--   86 (346)
Q Consensus        19 ~~~~~~~~~~~~~~~g~~~---~~~~~~i~~~~~~~~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~--   86 (346)
                      |.++.+.+++..++.|.-.   .+-+|.|.+|++......       .....+.+|...|.++++.  +..+++++.+  
T Consensus        17 V~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~~~   94 (365)
T 4h5i_A           17 AYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNENS   94 (365)
T ss_dssp             EEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCCCH
T ss_pred             EEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECCCc
Confidence            5566677788888887421   234678999999875432       1223466788888888765  4555554321  


Q ss_pred             -----cCCcceEEEEecCcccCCCCCccceeeee-----eeccCCceEEEEeecCCCCcEEEE-ecCCeEEEEEcCCCCC
Q 019059           87 -----TGESYGAAIWQIPELYGQLNSPQLERIAA-----LDAHVGKINCVLWWSSGRHDKLVS-IDEENIFLWSLDCSNK  155 (346)
Q Consensus        87 -----~~~d~~i~vw~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~-~~d~~i~vwd~~~~~~  155 (346)
                           ++.|+.+++|++.....     ..+....     ...+...+.+++|+|||+.+++++ +.|+.|++||+.+.+.
T Consensus        95 ~~l~s~~~d~~~r~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~  169 (365)
T 4h5i_A           95 TKITQGKGNKHLRKFKYDKVND-----QLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTE  169 (365)
T ss_dssp             HHHHHTSCCCCEEEEEEETTTT-----EEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEE
T ss_pred             cEEEEecCCCcEEEEEecCCCc-----eEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcE
Confidence                 34688899999863111     1122222     123445689999999999755555 4689999999987654


Q ss_pred             CceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCcccee-eccc---eeEEEeCCCCCcEEEEecCCC
Q 019059          156 NAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSI-EHAH---VRNVDYDTKKKHLLVTAADES  231 (346)
Q Consensus       156 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~---v~~~~~~~~~~~~l~~~~~dg  231 (346)
                      ...+.      |...|.+++|+|+++++++++. +.+++|+..+++..... ...|   +.+++|+|++. .+++++.|+
T Consensus       170 ~~~~~------~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~-~l~~~s~d~  241 (365)
T 4h5i_A          170 KFEIE------TRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDT-VLIAASLKK  241 (365)
T ss_dssp             EEEEE------CSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTE-EEEEEEESS
T ss_pred             EEEeC------CCCceEEEEEccCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCC-EEEEEecCC
Confidence            33321      3447999999999998888874 55777777777655432 2234   99999999998 788887776


Q ss_pred             ----eEEEEEcccCCc---ceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccc
Q 019059          232 ----GIHLWDLRMLKA---PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRAN  304 (346)
Q Consensus       232 ----~i~i~d~~~~~~---~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  304 (346)
                          .+++||+.....   ....+.+|..+|++++|+|+| ++||+|+.|++|+|||+++                   +
T Consensus       242 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg-~~lasgs~D~~V~iwd~~~-------------------~  301 (365)
T 4h5i_A          242 GKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKG-ELAVLASNDNSIALVKLKD-------------------L  301 (365)
T ss_dssp             SCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTS-CEEEEEETTSCEEEEETTT-------------------T
T ss_pred             cceeEEeecccccceecceeeeeecCCCCCeEeEEECCCC-CceEEEcCCCEEEEEECCC-------------------C
Confidence                688899875332   234567899999999999999 9999999999999999998                   7


Q ss_pred             ccccc-cccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          305 SLLNS-YSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       305 ~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      +++.. +.+|...|++++|+|+++ +||++|.|++|+||++.
T Consensus       302 ~~~~~~~~gH~~~V~~v~fSpdg~-~laS~S~D~tvrvw~ip  342 (365)
T 4h5i_A          302 SMSKIFKQAHSFAITEVTISPDST-YVASVSAANTIHIIKLP  342 (365)
T ss_dssp             EEEEEETTSSSSCEEEEEECTTSC-EEEEEETTSEEEEEECC
T ss_pred             cEEEEecCcccCCEEEEEECCCCC-EEEEEeCCCeEEEEEcC
Confidence            88876 578999999999999997 99999999999999984

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=6.6e-38  Score=269.03  Aligned_cols=307  Identities=16%  Similarity=0.163  Sum_probs=231.9

Q ss_pred             eeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEE
Q 019059           15 QARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAA   94 (346)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~   94 (346)
                      +...+..+.+++++..+++|.    .++.+.+|++...+ ......+.+|...|.+++|+|+++.++++    +.|+.|+
T Consensus         7 ~~~~i~~~~~s~~~~~l~~~~----~d~~v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~~~----~~dg~i~   77 (372)
T 1k8k_C            7 LVEPISCHAWNKDRTQIAICP----NNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSNRIVTC----GTDRNAY   77 (372)
T ss_dssp             CSSCCCEEEECTTSSEEEEEC----SSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTTEEEEE----ETTSCEE
T ss_pred             cCCCeEEEEECCCCCEEEEEe----CCCEEEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCCEEEEE----cCCCeEE
Confidence            455678888888998888874    57899999987752 22345667899999999999999888875    5899999


Q ss_pred             EEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEE
Q 019059           95 IWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGG  174 (346)
Q Consensus        95 vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~  174 (346)
                      +||+..       ........+..|...|.+++|+|+++. +++++.|+.|++||++...... ........|...+.++
T Consensus        78 vwd~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~v~i~d~~~~~~~~-~~~~~~~~~~~~i~~~  148 (372)
T 1k8k_C           78 VWTLKG-------RTWKPTLVILRINRAARCVRWAPNEKK-FAVGSGSRVISICYFEQENDWW-VCKHIKKPIRSTVLSL  148 (372)
T ss_dssp             EEEEET-------TEEEEEEECCCCSSCEEEEEECTTSSE-EEEEETTSSEEEEEEETTTTEE-EEEEECTTCCSCEEEE
T ss_pred             EEECCC-------CeeeeeEEeecCCCceeEEEECCCCCE-EEEEeCCCEEEEEEecCCCcce-eeeeeecccCCCeeEE
Confidence            999971       122333445678999999999999984 7777889999999998765321 1222224566789999


Q ss_pred             EeCCCCCcEEEEecCCeEEEEEcc------------------CCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeE
Q 019059          175 AWDPHDVNAVAATCESSVQFWDLR------------------SMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGI  233 (346)
Q Consensus       175 ~~~~~~~~l~~~~~d~~i~i~d~~------------------~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i  233 (346)
                      +|+|++..+++++.|+.|++||++                  .++....+. .|   +.+++|+|++. .+++++.|+.|
T Consensus       149 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~~~~~d~~i  226 (372)
T 1k8k_C          149 DWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-SSCGWVHGVCFSANGS-RVAWVSHDSTV  226 (372)
T ss_dssp             EECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-CCSSCEEEEEECSSSS-EEEEEETTTEE
T ss_pred             EEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecC-CCCCeEEEEEECCCCC-EEEEEeCCCEE
Confidence            999999999999999999999964                  455555554 33   99999999998 89999999999


Q ss_pred             EEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC--CCC---CCCCccc-ccC---Ccc----
Q 019059          234 HLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST--SNH---DELPSES-LVE---SPN----  300 (346)
Q Consensus       234 ~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~---~~~~~~~-~~~---~~~----  300 (346)
                      ++||+++ ..++..+..|..+|.+++|+|++ .+|+++ .|+.|++|+++.  +.-   ....... ...   ...    
T Consensus       227 ~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (372)
T 1k8k_C          227 CLADADK-KMAVATLASETLPLLAVTFITES-SLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQ  303 (372)
T ss_dssp             EEEEGGG-TTEEEEEECSSCCEEEEEEEETT-EEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHH
T ss_pred             EEEECCC-CceeEEEccCCCCeEEEEEecCC-CEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhh
Confidence            9999998 55888899999999999999999 888887 899999999986  210   0000000 000   000    


Q ss_pred             --ccccccc------ccc-ccccceeeEEEeC-CCC---CcEEEEeecCCeEEEeeec
Q 019059          301 --QRANSLL------NSY-SDYEDSVYGLAWS-SRE---PWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       301 --~~~~~~~------~~~-~~~~~~v~~~~~~-~~~---~~~l~s~~~d~~v~vw~~~  345 (346)
                        ...+...      ..+ .+|...|++++|+ +++   . +|++++.||.|++|+++
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~-~l~s~~~Dg~i~~W~~~  360 (372)
T 1k8k_C          304 NLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCS-QFCTTGMDGGMSIWDVR  360 (372)
T ss_dssp             HCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCS-EEEEEETTSEEEEEEHH
T ss_pred             hcccccccccCccccccccccccCCcceeEEecCCCccee-eEEEecCCCceEEEEec
Confidence              0001111      223 4899999999977 454   5 99999999999999974

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.4e-39  Score=278.75  Aligned_cols=317  Identities=14%  Similarity=0.225  Sum_probs=231.1

Q ss_pred             eEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCC-eEEEeeeeccccceEEeeecCC-CCceEEEEeecCCcceEE
Q 019059           17 RCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGT-ELICEGLFSHPNEIWDLSSCPF-DQRIFSTVFSTGESYGAA   94 (346)
Q Consensus        17 ~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~~~~~d~~i~   94 (346)
                      ..+..+.+++++..++.|.    .++.+.+|++..... ......+.+|...|.+++|+|+ +..+++    ++.|+.|+
T Consensus        68 ~~v~~~~~s~~~~~l~~~~----~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s----~~~dg~v~  139 (416)
T 2pm9_A           68 SKFNDLDWSHNNKIIAGAL----DNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLAS----GGNNGEIF  139 (416)
T ss_dssp             SCEEEEEECSSSSCEEEEE----SSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEE----ECSSSCEE
T ss_pred             CceEEEEECCCCCeEEEEc----cCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEE----EcCCCeEE
Confidence            3466677788888888874    578999999887321 1244677789999999999998 555555    37899999


Q ss_pred             EEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecc-cCCCceeeEE
Q 019059           95 IWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQ-SSGMLHYLSG  173 (346)
Q Consensus        95 vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~v~~  173 (346)
                      +||+.................+..|...|.+++|+|++..++++++.|+.|++||+++++....+.... ..+|...+.+
T Consensus       140 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~  219 (416)
T 2pm9_A          140 IWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSV  219 (416)
T ss_dssp             BCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEE
T ss_pred             EEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEE
Confidence            999983210000000112233467899999999999966567777889999999998765433332211 1223568999


Q ss_pred             EEeCCCC-CcEEEEecCC---eEEEEEccCC-Cccceeeccc---eeEEEeCC-CCCcEEEEecCCCeEEEEEcccCCcc
Q 019059          174 GAWDPHD-VNAVAATCES---SVQFWDLRSM-GKTNSIEHAH---VRNVDYDT-KKKHLLVTAADESGIHLWDLRMLKAP  244 (346)
Q Consensus       174 ~~~~~~~-~~l~~~~~d~---~i~i~d~~~~-~~~~~~~~~~---v~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~  244 (346)
                      ++|+|++ ..+++++.|+   .|++||++++ ++...+..+|   |.+++|+| ++. +|++++.|+.|++||+++ .++
T Consensus       220 ~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-~l~s~~~dg~v~~wd~~~-~~~  297 (416)
T 2pm9_A          220 VEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEH-LLLSSGRDNTVLLWNPES-AEQ  297 (416)
T ss_dssp             EEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSS-CEEEEESSSEEEEECSSS-CCE
T ss_pred             EEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCC-eEEEEeCCCCEEEeeCCC-Ccc
Confidence            9999997 4677888888   9999999987 4445444144   99999999 776 899999999999999997 568


Q ss_pred             eeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCccc---cc--------------CCccccccccc
Q 019059          245 IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSES---LV--------------ESPNQRANSLL  307 (346)
Q Consensus       245 ~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---~~--------------~~~~~~~~~~~  307 (346)
                      +..+..|...|.+++|+|+++.+|++++.|+.|++||+............   ..              .......... 
T Consensus       298 ~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  376 (416)
T 2pm9_A          298 LSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHL-  376 (416)
T ss_dssp             EEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCC-
T ss_pred             ceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccc-
Confidence            88899999999999999998779999999999999999875432221110   00              0000000011 


Q ss_pred             cccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          308 NSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       308 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      .....|..++.+++|+|+|+ +|++++.|+.|+||+++
T Consensus       377 ~~~~~~~~~~~~~~~s~dg~-~la~~~~d~~v~~w~~~  413 (416)
T 2pm9_A          377 QAPTWYGEPSPAAHWAFGGK-LVQITPDGKGVSITNPK  413 (416)
T ss_dssp             CCCSTTCCCSCCCEEETTTE-EECBCTTSSCBCCBCCC
T ss_pred             cCCccccCCccceEEeeCCe-EEEEeCCCCeEEEEEec
Confidence            22233677788999999997 99999999999999986

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.9e-37  Score=267.43  Aligned_cols=285  Identities=12%  Similarity=0.117  Sum_probs=218.6

Q ss_pred             ecccceeeEeeeccCCCCc-ceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecC-CCCceEEEEeec
Q 019059           10 YGLKYQARCISDVKADTDH-TSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCP-FDQRIFSTVFST   87 (346)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~~~   87 (346)
                      ..+..+...+.++.+++++ ..++.|.    .++.+.+|++....... .....+|...|.+++|+| ++..++++    
T Consensus        67 ~~~~~h~~~v~~~~~~~~~~~~l~s~~----~dg~i~iwd~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~l~s~----  137 (383)
T 3ei3_B           67 RTASPFDRRVTSLEWHPTHPTTVAVGS----KGGDIILWDYDVQNKTS-FIQGMGPGDAITGMKFNQFNTNQLFVS----  137 (383)
T ss_dssp             EEECCCSSCEEEEEECSSCTTEEEEEE----BTSCEEEEETTSTTCEE-EECCCSTTCBEEEEEEETTEEEEEEEE----
T ss_pred             EeccCCCCCEEEEEECCCCCCEEEEEc----CCCeEEEEeCCCcccce-eeecCCcCCceeEEEeCCCCCCEEEEE----
Confidence            3444455678888888888 7777774    57899999998754332 234457999999999999 55666664    


Q ss_pred             CCcceEEEEecCcccCCCCCccceeeeee---eccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeeccc
Q 019059           88 GESYGAAIWQIPELYGQLNSPQLERIAAL---DAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQS  164 (346)
Q Consensus        88 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~  164 (346)
                      +.|+.|++||+.         . ..+..+   ..|...|.+++|+|+++ .+++++.|+.|++||++ ++....     .
T Consensus       138 ~~d~~i~iwd~~---------~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~-~~~~~~-----~  200 (383)
T 3ei3_B          138 SIRGATTLRDFS---------G-SVIQVFAKTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGLD-GHEIFK-----E  200 (383)
T ss_dssp             ETTTEEEEEETT---------S-CEEEEEECCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEETT-SCEEEE-----E
T ss_pred             eCCCEEEEEECC---------C-CceEEEeccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEECC-CCEEEE-----e
Confidence            689999999997         2 333334   34458899999999998 47777889999999994 332222     2


Q ss_pred             CCCceeeEEEEeCCCCC-cEEEEecCCeEEEEEccC----CCccceeeccc-eeEEEeCC-CCCcEEEEecCCCeEEEEE
Q 019059          165 SGMLHYLSGGAWDPHDV-NAVAATCESSVQFWDLRS----MGKTNSIEHAH-VRNVDYDT-KKKHLLVTAADESGIHLWD  237 (346)
Q Consensus       165 ~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~----~~~~~~~~~~~-v~~~~~~~-~~~~~l~~~~~dg~i~i~d  237 (346)
                      .+|...|.+++|+|+++ .+++++.|+.|++||+++    +.....+.... |.+++|+| ++. +|++++.|+.|++||
T Consensus       201 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-~l~~~~~d~~i~iwd  279 (383)
T 3ei3_B          201 KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDST-KLLTTDQRNEIRVYS  279 (383)
T ss_dssp             ECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSC-EEEEEESSSEEEEEE
T ss_pred             ccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCC-EEEEEcCCCcEEEEE
Confidence            24667999999999999 788999999999999998    44444443223 99999999 888 899999999999999


Q ss_pred             cccCCcceeeecCCC-----------------cceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcc
Q 019059          238 LRMLKAPIQELPGHT-----------------HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPN  300 (346)
Q Consensus       238 ~~~~~~~~~~~~~~~-----------------~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  300 (346)
                      +++.. ....+..|.                 ..+..++|+|++ .+  +++.|+.|++||+.+                
T Consensus       280 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg-~~--s~s~d~~i~iwd~~~----------------  339 (383)
T 3ei3_B          280 SYDWS-KPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDD-QL--LLNDKRTIDIYDANS----------------  339 (383)
T ss_dssp             TTBTT-SCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCT-TT--CTTCCCCEEEEETTT----------------
T ss_pred             CCCCc-cccccccccccccccccceEEeccCCCCceEEEecCCc-cc--ccCCCCeEEEEecCC----------------
Confidence            99743 444554332                 234457777777 55  888999999999998                


Q ss_pred             cccccccccccc--ccceeeEEEeCCCCCcEEEEeecCCeEEEeeecC
Q 019059          301 QRANSLLNSYSD--YEDSVYGLAWSSREPWIFASLSYDGRVRNHMLEK  346 (346)
Q Consensus       301 ~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~~  346 (346)
                         ++++..+.+  |...+..++|+|+++ +|++++ |+.|++|++++
T Consensus       340 ---~~~~~~l~~~~~~~~~~~~~~s~~g~-~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          340 ---GGLVHQLRDPNAAGIISLNKFSPTGD-VLASGM-GFNILIWNRED  382 (383)
T ss_dssp             ---CCEEEEECBTTBCSCCCEEEECTTSS-EEEEEE-TTEEEEEECC-
T ss_pred             ---CceeeeecCCCCCceEEEEEEecCcc-EEEEec-CCcEEEEecCC
Confidence               788888876  556778889999997 888887 99999999864

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=3.5e-37  Score=261.79  Aligned_cols=251  Identities=16%  Similarity=0.200  Sum_probs=197.9

Q ss_pred             EeeeeccccceEEeee-----cC-CCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecC
Q 019059           58 CEGLFSHPNEIWDLSS-----CP-FDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSS  131 (346)
Q Consensus        58 ~~~~~~h~~~v~~~~~-----~~-~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  131 (346)
                      ...+.+|.+.|++++|     ++ +++.|+++    +.|++|++||+.....  ......+...+.+|...|.+++|+|+
T Consensus        14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sg----s~D~~v~iWd~~~~~~--~~~~~~~~~~l~~h~~~V~~~~~~~~   87 (343)
T 2xzm_R           14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISG----SRDKTVMIWKLYEEEQ--NGYFGIPHKALTGHNHFVSDLALSQE   87 (343)
T ss_dssp             EEEEECCSSCEEEEEECCCSSTTCCCCEEEEE----ETTSCEEEEEECSSCC--SSBSEEEEEEECCCSSCEEEEEECSS
T ss_pred             eeeeccchhhhhheeeEEEeecCCCCCEEEEE----cCCCEEEEEECCcCCc--ccccccccchhccCCCceEEEEECCC
Confidence            4567899999999999     76 77777764    7999999999873111  11124566778899999999999999


Q ss_pred             CCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceee-ccc
Q 019059          132 GRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE-HAH  210 (346)
Q Consensus       132 ~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~  210 (346)
                      +. ++++++.|+.|++||+.+++....+     .+|...|.+++|+|+++.+++++.|+.|++||+.......... ..|
T Consensus        88 ~~-~l~s~s~D~~v~lwd~~~~~~~~~~-----~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~  161 (343)
T 2xzm_R           88 NC-FAISSSWDKTLRLWDLRTGTTYKRF-----VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENH  161 (343)
T ss_dssp             TT-EEEEEETTSEEEEEETTSSCEEEEE-----ECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSC
T ss_pred             CC-EEEEEcCCCcEEEEECCCCcEEEEE-----cCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCC
Confidence            98 4677789999999999876543332     3477799999999999999999999999999998433222111 133


Q ss_pred             ---eeEEEeCCCC----------CcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeE
Q 019059          211 ---VRNVDYDTKK----------KHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTV  277 (346)
Q Consensus       211 ---v~~~~~~~~~----------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i  277 (346)
                         +.+++|+|++          . ++++++.|+.|++||.+  ......+.+|...|.+++|+|++ .+|++|+.|+.|
T Consensus       162 ~~~v~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~--~~~~~~~~~h~~~v~~~~~s~~g-~~l~sgs~dg~v  237 (343)
T 2xzm_R          162 SDWVSCVRYSPIMKSANKVQPFAP-YFASVGWDGRLKVWNTN--FQIRYTFKAHESNVNHLSISPNG-KYIATGGKDKKL  237 (343)
T ss_dssp             SSCEEEEEECCCCCSCSCCCSSCC-EEEEEETTSEEEEEETT--TEEEEEEECCSSCEEEEEECTTS-SEEEEEETTCEE
T ss_pred             CceeeeeeeccccccccccCCCCC-EEEEEcCCCEEEEEcCC--CceeEEEcCccccceEEEECCCC-CEEEEEcCCCeE
Confidence               9999999987          4 89999999999999954  44677888999999999999999 999999999999


Q ss_pred             EEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          278 NLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       278 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      ++||++..                  ..+...+ .+...|.+++|+|++. +++ ++.|+.|++|++.
T Consensus       238 ~iwd~~~~------------------~~~~~~~-~~~~~v~~v~~sp~~~-~la-~~~d~~v~iw~~~  284 (343)
T 2xzm_R          238 LIWDILNL------------------TYPQREF-DAGSTINQIAFNPKLQ-WVA-VGTDQGVKIFNLM  284 (343)
T ss_dssp             EEEESSCC------------------SSCSEEE-ECSSCEEEEEECSSSC-EEE-EEESSCEEEEESS
T ss_pred             EEEECCCC------------------cccceee-cCCCcEEEEEECCCCC-EEE-EECCCCEEEEEeC
Confidence            99999540                  2233333 2445699999999986 555 5568899999974

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.1e-36  Score=265.75  Aligned_cols=262  Identities=16%  Similarity=0.211  Sum_probs=215.3

Q ss_pred             CCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeecc
Q 019059           40 EENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH  119 (346)
Q Consensus        40 ~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~  119 (346)
                      .++.|++|+..... ......+.+|...|++++|+|++++|+++    +.|+.|++||+.         ..+.+..+.+|
T Consensus       123 ld~tV~lWd~~tg~-~~~~~~~~~~~~~V~sv~fspdg~~lasg----s~Dg~v~iWd~~---------~~~~~~~~~~h  188 (420)
T 4gga_A          123 LDNSVYLWSASSGD-ILQLLQMEQPGEYISSVAWIKEGNYLAVG----TSSAEVQLWDVQ---------QQKRLRNMTSH  188 (420)
T ss_dssp             ETTEEEEEETTTCC-EEEEEECCSTTCCEEEEEECTTSSEEEEE----ETTSCEEEEETT---------TTEEEEEECCC
T ss_pred             eCCEEEEEECCCCC-EEEEEEecCCCCcEEEEEECCCCCEEEEE----ECCCeEEEEEcC---------CCcEEEEEeCC
Confidence            47899999987643 33334556788999999999999988885    699999999998         77888999999


Q ss_pred             CCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccC
Q 019059          120 VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRS  199 (346)
Q Consensus       120 ~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~  199 (346)
                      ...+.+++|++  . ++++++.|+.+++||..........    ..+|...+..+.|+|++..+++++.|+.+++||..+
T Consensus       189 ~~~v~~~s~~~--~-~l~sgs~d~~i~~~d~~~~~~~~~~----~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~  261 (420)
T 4gga_A          189 SARVGSLSWNS--Y-ILSSGSRSGHIHHHDVRVAEHHVAT----LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP  261 (420)
T ss_dssp             SSCEEEEEEET--T-EEEEEETTSEEEEEETTSSSCEEEE----EECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred             CCceEEEeeCC--C-EEEEEeCCCceeEeeecccceeeEE----ecccccceeeeeecCCCCeeeeeeccccceEEeecc
Confidence            99999988864  3 4777789999999998865433222    235677899999999999999999999999999998


Q ss_pred             CCccce---eeccc---eeEEEeCCCCCcEEEE--ecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEe
Q 019059          200 MGKTNS---IEHAH---VRNVDYDTKKKHLLVT--AADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSA  271 (346)
Q Consensus       200 ~~~~~~---~~~~~---v~~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~  271 (346)
                      ++....   ....+   |.+++|+|.+..++++  |+.|+.|++||+++ ..++..+.. ...+.++.|+|++ ..++++
T Consensus       262 ~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t-~~~~~~~~~-~~~v~~~~~~~~~-~~lv~~  338 (420)
T 4gga_A          262 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS-GACLSAVDA-HSQVCSILWSPHY-KELISG  338 (420)
T ss_dssp             CSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTT-TEEEEEEEC-SSCEEEEEEETTT-TEEEEE
T ss_pred             ccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc-cccceeecc-ccceeeeeecCCC-CeEEEE
Confidence            764321   12233   9999999998877765  45899999999997 556666664 4678899999999 666654


Q ss_pred             --cCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          272 --GTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       272 --~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                        +.|+.|+|||+.+                   ++++..+.+|.+.|++++|+|++. +|++++.|++|+||++.
T Consensus       339 sg~~d~~I~iwd~~~-------------------~~~v~~l~gH~~~V~~l~~spdg~-~l~S~s~D~tvriWdv~  394 (420)
T 4gga_A          339 HGFAQNQLVIWKYPT-------------------MAKVAELKGHTSRVLSLTMSPDGA-TVASAAADETLRLWRCF  394 (420)
T ss_dssp             ECTTTCCEEEEETTT-------------------CCEEEEECCCSSCEEEEEECTTSS-CEEEEETTTEEEEECCS
T ss_pred             EecCCCEEEEEECCC-------------------CcEEEEEcCCCCCEEEEEEcCCCC-EEEEEecCCeEEEEECC
Confidence              3799999999998                   899999999999999999999997 89999999999999974

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=4.2e-37  Score=261.22  Aligned_cols=275  Identities=16%  Similarity=0.194  Sum_probs=211.0

Q ss_pred             eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeec--CCCCcE
Q 019059           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWS--SGRHDK  136 (346)
Q Consensus        59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~  136 (346)
                      ..+.+|.+.|++++|+|+++.|+++    +.|+.|++|++...     ....+....+..|...|.+++|+|  ++. ++
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~----~~dg~i~iw~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~d~~-~l   74 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATC----SSDQHIKVFKLDKD-----TSNWELSDSWRAHDSSIVAIDWASPEYGR-II   74 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEE----ETTSEEEEEEECSS-----SCCEEEEEEEECCSSCEEEEEECCGGGCS-EE
T ss_pred             ccCcccccceeEEEEcCCCCEEEEe----eCCCeEEEEECCCC-----CCcceecceeccCCCcEEEEEEcCCCCCC-EE
Confidence            4456899999999999999988875    68999999999721     112356777889999999999999  466 47


Q ss_pred             EEEecCCeEEEEEcCCCCCCce----eeecccCCCceeeEEEEeCCC--CCcEEEEecCCeEEEEEccCCCccceeec--
Q 019059          137 LVSIDEENIFLWSLDCSNKNAQ----VQSKQSSGMLHYLSGGAWDPH--DVNAVAATCESSVQFWDLRSMGKTNSIEH--  208 (346)
Q Consensus       137 ~~~~~d~~i~vwd~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--  208 (346)
                      ++++.|+.|++||+.++.....    ........|...+.+++|+|+  +..+++++.|+.|++||+++++....+..  
T Consensus        75 ~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~  154 (351)
T 3f3f_A           75 ASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTS  154 (351)
T ss_dssp             EEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEE
T ss_pred             EEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccc
Confidence            7778899999999987642210    111223457779999999999  99999999999999999998886654431  


Q ss_pred             ----------cc---eeEEEeCCC---CCcEEEEecCCCeEEEEEcccCC-cceeeecCCCcceEEEEeCCCCC---cEE
Q 019059          209 ----------AH---VRNVDYDTK---KKHLLVTAADESGIHLWDLRMLK-APIQELPGHTHWTWAVCCNPEYD---GFI  268 (346)
Q Consensus       209 ----------~~---v~~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~v~~~~~~~---~~l  268 (346)
                                .+   +.+++|+|+   +. .+++++.++.+.+|+..... ..+..+.+|...|++++|+|++.   .+|
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l  233 (351)
T 3f3f_A          155 EMKVLSIPPANHLQSDFCLSWCPSRFSPE-KLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLI  233 (351)
T ss_dssp             EEESCSCCCSSCSCCCEEEEECCCSSSCC-EEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEE
T ss_pred             cccccccccCCcccceeEEEeccCCCCCc-EEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEE
Confidence                      22   899999997   66 89999999999777766532 13667788999999999999973   689


Q ss_pred             EEecCCCeEEEEecCCCCCCCCCcccc---------------------------cCCccccccccccccccccceeeEEE
Q 019059          269 LSAGTDSTVNLWLVSTSNHDELPSESL---------------------------VESPNQRANSLLNSYSDYEDSVYGLA  321 (346)
Q Consensus       269 ~s~~~d~~i~iwd~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~v~~~~  321 (346)
                      ++++.|+.|++||++............                           .........+++..+.+|...|++++
T Consensus       234 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  313 (351)
T 3f3f_A          234 ATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVS  313 (351)
T ss_dssp             EEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEE
T ss_pred             EEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEE
Confidence            999999999999998742111100000                           00001122466777888999999999


Q ss_pred             eCCCCCcEEEEeecCCeEEEeeec
Q 019059          322 WSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       322 ~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      |+|+++ +|++++.|+.|++|+++
T Consensus       314 ~s~~~~-~l~s~~~dg~v~iw~~~  336 (351)
T 3f3f_A          314 WNLTGT-ILSSAGDDGKVRLWKAT  336 (351)
T ss_dssp             ECSSSC-CEEEEETTSCEEEEEEC
T ss_pred             EcCCCC-EEEEecCCCcEEEEecC
Confidence            999997 89999999999999986

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.3e-36  Score=263.71  Aligned_cols=262  Identities=16%  Similarity=0.203  Sum_probs=216.3

Q ss_pred             CCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeec
Q 019059           39 KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA  118 (346)
Q Consensus        39 ~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~  118 (346)
                      +.++.+++|++.....  .......|...|.+++|+|++..|+++    +.|+.|++||+.         ..+.+..+..
T Consensus       110 ~~d~~v~lw~~~~~~~--~~~~~~~~~~~v~~v~~s~~~~~l~~~----~~dg~i~iwd~~---------~~~~~~~~~~  174 (401)
T 4aez_A          110 ALERNVYVWNADSGSV--SALAETDESTYVASVKWSHDGSFLSVG----LGNGLVDIYDVE---------SQTKLRTMAG  174 (401)
T ss_dssp             EETTEEEEEETTTCCE--EEEEECCTTCCEEEEEECTTSSEEEEE----ETTSCEEEEETT---------TCCEEEEECC
T ss_pred             ECCCeEEEeeCCCCcE--eEeeecCCCCCEEEEEECCCCCEEEEE----CCCCeEEEEECc---------CCeEEEEecC
Confidence            3578999999876532  223333488999999999999888885    589999999998         6778888999


Q ss_pred             cCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEcc
Q 019059          119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLR  198 (346)
Q Consensus       119 ~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~  198 (346)
                      |...|.+++|++  . .+++++.|+.|++||++........    ..+|...+.+++|+|++..+++++.|+.|++||++
T Consensus       175 ~~~~v~~~~~~~--~-~l~~~~~dg~i~i~d~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~  247 (401)
T 4aez_A          175 HQARVGCLSWNR--H-VLSSGSRSGAIHHHDVRIANHQIGT----LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDAR  247 (401)
T ss_dssp             CSSCEEEEEEET--T-EEEEEETTSEEEEEETTSSSCEEEE----EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             CCCceEEEEECC--C-EEEEEcCCCCEEEEecccCcceeeE----EcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCC
Confidence            999999999953  3 5778889999999999854432222    23466799999999999999999999999999999


Q ss_pred             CCCccceeeccc--eeEEEeCCCCCcEEEEec--CCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEE--ec
Q 019059          199 SMGKTNSIEHAH--VRNVDYDTKKKHLLVTAA--DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILS--AG  272 (346)
Q Consensus       199 ~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s--~~  272 (346)
                      +++....+....  |.+++|+|++..++++++  .|+.|++||+++ ..++..+. +...|.+++|+|++ .+|++  |+
T Consensus       248 ~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~-~~~~~~~~-~~~~v~~~~~s~~~-~~l~~~~g~  324 (401)
T 4aez_A          248 SSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT-GARVNTVD-AGSQVTSLIWSPHS-KEIMSTHGF  324 (401)
T ss_dssp             CSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT-CCEEEEEE-CSSCEEEEEECSSS-SEEEEEECT
T ss_pred             CCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC-CCEEEEEe-CCCcEEEEEECCCC-CeEEEEeec
Confidence            988877765222  999999998887888865  799999999997 55677775 67889999999999 88888  55


Q ss_pred             CCCeEEEEecCCCCCCCCCcccccCCcccccccc--ccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          273 TDSTVNLWLVSTSNHDELPSESLVESPNQRANSL--LNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       273 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      .|+.|++||+..                   ++.  ...+.+|...|.+++|+|+++ +|++++.|+.|++|++.
T Consensus       325 ~dg~i~v~~~~~-------------------~~~~~~~~~~~h~~~v~~~~~s~dg~-~l~s~~~dg~i~iw~~~  379 (401)
T 4aez_A          325 PDNNLSIWSYSS-------------------SGLTKQVDIPAHDTRVLYSALSPDGR-ILSTAASDENLKFWRVY  379 (401)
T ss_dssp             TTCEEEEEEEET-------------------TEEEEEEEEECCSSCCCEEEECTTSS-EEEEECTTSEEEEEECC
T ss_pred             CCCcEEEEecCC-------------------ccceeEEEecCCCCCEEEEEECCCCC-EEEEEeCCCcEEEEECC
Confidence            899999999987                   333  334678999999999999997 89999999999999985

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.2e-37  Score=263.47  Aligned_cols=255  Identities=17%  Similarity=0.284  Sum_probs=206.6

Q ss_pred             eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecC--CCCcE
Q 019059           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSS--GRHDK  136 (346)
Q Consensus        59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~  136 (346)
                      ..+.+|.+.|.+++|+|+++.|+++    +.|+.|++|++.       ....+.+..+..|...|.+++|+++  +. ++
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~----~~dg~i~iw~~~-------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~l   72 (379)
T 3jrp_A            5 VIANAHNELIHDAVLDYYGKRLATC----SSDKTIKIFEVE-------GETHKLIDTLTGHEGPVWRVDWAHPKFGT-IL   72 (379)
T ss_dssp             CCEEECCCCEEEEEECSSSSEEEEE----ETTSCEEEEEEE-------TTEEEEEEEECCCSSCEEEEEECCGGGCS-EE
T ss_pred             EEecCCcccEEEEEEcCCCCEEEEE----ECCCcEEEEecC-------CCcceeeeEecCCCCcEEEEEeCCCCCCC-EE
Confidence            4567899999999999999988875    589999999997       2345777788899999999999877  66 47


Q ss_pred             EEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCC--CCcEEEEecCCeEEEEEccCCCccceee-ccc---
Q 019059          137 LVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPH--DVNAVAATCESSVQFWDLRSMGKTNSIE-HAH---  210 (346)
Q Consensus       137 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~---  210 (346)
                      ++++.|+.|++||+.+++....   .....|...+.+++|+|+  +..+++++.|+.|++||++++....... ..|   
T Consensus        73 ~s~~~dg~v~iwd~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~  149 (379)
T 3jrp_A           73 ASCSYDGKVLIWKEENGRWSQI---AVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG  149 (379)
T ss_dssp             EEEETTSCEEEEEEETTEEEEE---EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTC
T ss_pred             EEeccCCEEEEEEcCCCceeEe---eeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCc
Confidence            7778899999999987541111   222346679999999999  8999999999999999999875433222 233   


Q ss_pred             eeEEEeCC-------------CCCcEEEEecCCCeEEEEEcccCCc---ceeeecCCCcceEEEEeCCC---CCcEEEEe
Q 019059          211 VRNVDYDT-------------KKKHLLVTAADESGIHLWDLRMLKA---PIQELPGHTHWTWAVCCNPE---YDGFILSA  271 (346)
Q Consensus       211 v~~~~~~~-------------~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~v~~v~~~~~---~~~~l~s~  271 (346)
                      |.+++|+|             ++. ++++++.|+.|++||++....   ....+.+|...|.+++|+|+   + .+|+++
T Consensus       150 v~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~-~~l~s~  227 (379)
T 3jrp_A          150 VNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR-SYLASV  227 (379)
T ss_dssp             EEEEEECCCC----------CTTC-EEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS-EEEEEE
T ss_pred             eEEEEEcCccccccccccCCCCCC-EEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCC-CeEEEE
Confidence            99999999             576 899999999999999986432   34567789999999999999   7 999999


Q ss_pred             cCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          272 GTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       272 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      +.|+.|++||++......              ...+.....|...|++++|+|+++ +|++++.||.|++|+++
T Consensus       228 ~~dg~i~iwd~~~~~~~~--------------~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~dg~i~iw~~~  286 (379)
T 3jrp_A          228 SQDRTCIIWTQDNEQGPW--------------KKTLLKEEKFPDVLWRASWSLSGN-VLALSGGDNKVTLWKEN  286 (379)
T ss_dssp             ETTSCEEEEEESSTTSCC--------------EEEESSSSCCSSCEEEEEECSSSC-CEEEEESSSSEEEEEEE
T ss_pred             eCCCEEEEEeCCCCCccc--------------eeeeeccccCCCcEEEEEEcCCCC-EEEEecCCCcEEEEeCC
Confidence            999999999998711000              123333445888899999999997 88999999999999975

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=3.3e-36  Score=254.80  Aligned_cols=283  Identities=13%  Similarity=0.161  Sum_probs=223.5

Q ss_pred             eeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEE
Q 019059           15 QARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAA   94 (346)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~   94 (346)
                      ....+..+.+++++..++++..    .+.+..   +............+|...|.+++|+|+++.++++    + |+.|+
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~----~~~~~~---~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~----~-dg~i~   75 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFP----PDALIG---PGIPRHARQINTLNHGEVVCAVTISNPTRHVYTG----G-KGCVK   75 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCC----TTSSSS---TTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEE----C-BSEEE
T ss_pred             cCCceeEEEECCCCCEEEeecC----CCcEec---cccCCccccceeccCCCceEEEEEecCCcEEEEc----C-CCeEE
Confidence            3566778888999988887642    111211   2223333444556899999999999999888774    5 99999


Q ss_pred             EEecCcccCCCCCccceeeeeee--ccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeE
Q 019059           95 IWQIPELYGQLNSPQLERIAALD--AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLS  172 (346)
Q Consensus        95 vw~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~  172 (346)
                      +|++....      .......+.  .|...|.+++|+|+++. +++++.|+.|++||+.+++......   ...|...+.
T Consensus        76 iw~~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~~~d~~~~~~~~~~~---~~~~~~~i~  145 (337)
T 1gxr_A           76 VWDISHPG------NKSPVSQLDCLNRDNYIRSCKLLPDGCT-LIVGGEASTLSIWDLAAPTPRIKAE---LTSSAPACY  145 (337)
T ss_dssp             EEETTSTT------CCSCSEEEECSCTTSBEEEEEECTTSSE-EEEEESSSEEEEEECCCC--EEEEE---EECSSSCEE
T ss_pred             EEECCCCC------ceeeeecccccCCCCcEEEEEEcCCCCE-EEEEcCCCcEEEEECCCCCcceeee---cccCCCceE
Confidence            99997311      112223333  78899999999999984 6777889999999998765322222   233566899


Q ss_pred             EEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeec
Q 019059          173 GGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP  249 (346)
Q Consensus       173 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  249 (346)
                      +++|+|+++.+++++.|+.|++||+++++....+. .|   +.+++|+|++. .+++++.|+.|++||+++ ...+..+.
T Consensus       146 ~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~-~~~~~~~~  222 (337)
T 1gxr_A          146 ALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ-GHTDGASCIDISNDGT-KLWTGGLDNTVRSWDLRE-GRQLQQHD  222 (337)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTT-TEEEEEEE
T ss_pred             EEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeee-cccCceEEEEECCCCC-EEEEEecCCcEEEEECCC-CceEeeec
Confidence            99999999999999999999999999988877776 33   99999999998 899999999999999997 44555554


Q ss_pred             CCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcE
Q 019059          250 GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWI  329 (346)
Q Consensus       250 ~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  329 (346)
                       +...+.+++|+|++ .+|++++.|+.|++||++.                   .+ ...+..|...|.+++|+|+++ +
T Consensus       223 -~~~~v~~~~~s~~~-~~l~~~~~~~~i~~~~~~~-------------------~~-~~~~~~~~~~v~~~~~~~~~~-~  279 (337)
T 1gxr_A          223 -FTSQIFSLGYCPTG-EWLAVGMESSNVEVLHVNK-------------------PD-KYQLHLHESCVLSLKFAYCGK-W  279 (337)
T ss_dssp             -CSSCEEEEEECTTS-SEEEEEETTSCEEEEETTS-------------------SC-EEEECCCSSCEEEEEECTTSS-E
T ss_pred             -CCCceEEEEECCCC-CEEEEEcCCCcEEEEECCC-------------------CC-eEEEcCCccceeEEEECCCCC-E
Confidence             78899999999999 9999999999999999997                   33 345678889999999999997 8


Q ss_pred             EEEeecCCeEEEeeec
Q 019059          330 FASLSYDGRVRNHMLE  345 (346)
Q Consensus       330 l~s~~~d~~v~vw~~~  345 (346)
                      |++++.|+.|++|+++
T Consensus       280 l~~~~~dg~i~~~~~~  295 (337)
T 1gxr_A          280 FVSTGKDNLLNAWRTP  295 (337)
T ss_dssp             EEEEETTSEEEEEETT
T ss_pred             EEEecCCCcEEEEECC
Confidence            9999999999999975

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.7e-38  Score=270.64  Aligned_cols=307  Identities=15%  Similarity=0.106  Sum_probs=217.9

Q ss_pred             eeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEE
Q 019059           16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAI   95 (346)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~v   95 (346)
                      ...|.++.+++++..+++|.    .++.+.+|++.... ......+.+|.+.|.+++|+|+++.|+++    +.|+.|++
T Consensus        11 ~~~v~~~~~s~~g~~l~~~~----~d~~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~----s~d~~v~v   81 (377)
T 3dwl_C           11 PKPSYEHAFNSQRTEFVTTT----ATNQVELYEQDGNG-WKHARTFSDHDKIVTCVDWAPKSNRIVTC----SQDRNAYV   81 (377)
T ss_dssp             SSCCSCCEECSSSSEEECCC----SSSCBCEEEEETTE-EEECCCBCCCSSCEEEEEECTTTCCEEEE----ETTSSEEE
T ss_pred             CCcEEEEEECCCCCEEEEec----CCCEEEEEEccCCc-eEEEEEEecCCceEEEEEEeCCCCEEEEE----eCCCeEEE
Confidence            34677888889998888763    57899999998642 13446677899999999999999988885    68999999


Q ss_pred             EecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEE
Q 019059           96 WQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGA  175 (346)
Q Consensus        96 w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~  175 (346)
                      ||+....      .......+..|...|.+++|+|+++. +++++.|+.|++||+++++....... ....|...+.+++
T Consensus        82 wd~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~h~~~v~~~~  153 (377)
T 3dwl_C           82 YEKRPDG------TWKQTLVLLRLNRAATFVRWSPNEDK-FAVGSGARVISVCYFEQENDWWVSKH-LKRPLRSTILSLD  153 (377)
T ss_dssp             C------------CCCCEEECCCCSSCEEEEECCTTSSC-CEEEESSSCEEECCC-----CCCCEE-ECSSCCSCEEEEE
T ss_pred             EEcCCCC------ceeeeeEecccCCceEEEEECCCCCE-EEEEecCCeEEEEEECCcccceeeeE-eecccCCCeEEEE
Confidence            9998210      12356677789999999999999985 77778899999999987653111111 1112667999999


Q ss_pred             eCCCCCcEEEEecCCeEEEEEccCC------------------Cccceeeccc---eeEEEeCCCCCcEEEEecCCCeEE
Q 019059          176 WDPHDVNAVAATCESSVQFWDLRSM------------------GKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIH  234 (346)
Q Consensus       176 ~~~~~~~l~~~~~d~~i~i~d~~~~------------------~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~  234 (346)
                      |+|+++.+++++.|+.|++||++..                  ++...+  +|   |.+++|+|+++ +|++++.|+.|+
T Consensus       154 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~-~l~~~~~d~~i~  230 (377)
T 3dwl_C          154 WHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--PSGGWVHAVGFSPSGN-ALAYAGHDSSVT  230 (377)
T ss_dssp             ECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--CCSSSEEEEEECTTSS-CEEEEETTTEEC
T ss_pred             EcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc--cCCceEEEEEECCCCC-EEEEEeCCCcEE
Confidence            9999999999999999999999632                  233333  34   99999999998 899999999999


Q ss_pred             EEEcccCCcc---eeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCC---CC--ccccc----------
Q 019059          235 LWDLRMLKAP---IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDE---LP--SESLV----------  296 (346)
Q Consensus       235 i~d~~~~~~~---~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~--~~~~~----------  296 (346)
                      +||++....+   +..+..|...|.+++|+|++ .+|++++.|+.+ +|+........   ..  .....          
T Consensus       231 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (377)
T 3dwl_C          231 IAYPSAPEQPPRALITVKLSQLPLRSLLWANES-AIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEG  308 (377)
T ss_dssp             -CEECSTTSCEEECCCEECSSSCEEEEEEEETT-EEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCC
T ss_pred             EEECCCCCCcceeeEeecCCCCceEEEEEcCCC-CEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccc
Confidence            9999974421   77888999999999999999 999999877655 77665321000   00  00000          


Q ss_pred             -C-Cc--------cc--------cccccccccccccceeeEEEeCCCCCc---EEEEeecCCeEEEeee
Q 019059          297 -E-SP--------NQ--------RANSLLNSYSDYEDSVYGLAWSSREPW---IFASLSYDGRVRNHML  344 (346)
Q Consensus       297 -~-~~--------~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~---~l~s~~~d~~v~vw~~  344 (346)
                       . ..        ..        ...........|...|+++++.+....   .|++++.||.|++||+
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          309 REEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             CCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             cccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence             0 00        00        000111222348999999998765543   5999999999999986

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.3e-37  Score=272.80  Aligned_cols=269  Identities=13%  Similarity=0.123  Sum_probs=198.2

Q ss_pred             eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEE
Q 019059           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV  138 (346)
Q Consensus        59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  138 (346)
                      ....+|...|++|+|+|.+..++++   |+.||.|+|||+..       ........+.+|.+.|.+++|+|.+...+++
T Consensus       113 ~~~~~~~~~V~~l~~~P~~~~~las---Gs~dg~i~lWd~~~-------~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s  182 (435)
T 4e54_B          113 QKAAPFDRRATSLAWHPTHPSTVAV---GSKGGDIMLWNFGI-------KDKPTFIKGIGAGGSITGLKFNPLNTNQFYA  182 (435)
T ss_dssp             CEEEECSSCEEEEEECSSCTTCEEE---EETTSCEEEECSSC-------CSCCEEECCCSSSCCCCEEEECSSCTTEEEE
T ss_pred             ccCCCCCCCEEEEEEeCCCCCEEEE---EeCCCEEEEEECCC-------CCceeEEEccCCCCCEEEEEEeCCCCCEEEE
Confidence            3445788999999999977666655   47999999999972       1234445567899999999999865445888


Q ss_pred             EecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEE
Q 019059          139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVD  215 (346)
Q Consensus       139 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~  215 (346)
                      ++.|+.|++||+++...  .... ....+...+.+++|+|++..+++++.||.|++||++. +.+..+. +|   |.+++
T Consensus       183 ~s~D~~v~iwd~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~-~h~~~v~~v~  257 (435)
T 4e54_B          183 SSMEGTTRLQDFKGNIL--RVFA-SSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLR-MHKKKVTHVA  257 (435)
T ss_dssp             ECSSSCEEEEETTSCEE--EEEE-CCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSB-CCSSCEEEEE
T ss_pred             EeCCCEEEEeeccCCce--eEEe-ccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEe-cccceEEeee
Confidence            88999999999975321  1111 1223344678899999999999999999999999975 4444454 44   99999


Q ss_pred             eCCCCCcEEEEecCCCeEEEEEcccCCc--ceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCC---
Q 019059          216 YDTKKKHLLVTAADESGIHLWDLRMLKA--PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDEL---  290 (346)
Q Consensus       216 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~---  290 (346)
                      |+|+++.++++++.|+.|++||+++...  .+....+|...|++++|+|++ .+|++++.|+.|+|||++.......   
T Consensus       258 ~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg-~~l~s~~~D~~i~iwd~~~~~~~~~~~~  336 (435)
T 4e54_B          258 LNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG-ARLLTTDQKSEIRVYSASQWDCPLGLIP  336 (435)
T ss_dssp             ECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTS-SEEEEEESSSCEEEEESSSSSSEEEECC
T ss_pred             ecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCC-CeeEEEcCCCEEEEEECCCCccceEEec
Confidence            9999987899999999999999987432  223345799999999999999 9999999999999999987532100   


Q ss_pred             ---------Cccccc-----------CCc------------------ccccccccccc-ccccceeeEE-EeCCCCCcEE
Q 019059          291 ---------PSESLV-----------ESP------------------NQRANSLLNSY-SDYEDSVYGL-AWSSREPWIF  330 (346)
Q Consensus       291 ---------~~~~~~-----------~~~------------------~~~~~~~~~~~-~~~~~~v~~~-~~~~~~~~~l  330 (346)
                               ......           ..+                  ....++++..+ .+|...|.++ +|+|++. +|
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~-~l  415 (435)
T 4e54_B          337 HPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGD-TL  415 (435)
T ss_dssp             CCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSS-CE
T ss_pred             ccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCC-EE
Confidence                     000000           000                  00123333333 3577778887 6999997 78


Q ss_pred             EEeecCCeEEEeeec
Q 019059          331 ASLSYDGRVRNHMLE  345 (346)
Q Consensus       331 ~s~~~d~~v~vw~~~  345 (346)
                      ++++ |+.|+||+++
T Consensus       416 asg~-d~~i~iW~~~  429 (435)
T 4e54_B          416 ASAM-GYHILIWSQQ  429 (435)
T ss_dssp             EEEC-SSEEEECCCC
T ss_pred             EEEc-CCcEEEEECC
Confidence            8776 8899999986

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=9.9e-37  Score=266.10  Aligned_cols=291  Identities=15%  Similarity=0.181  Sum_probs=224.7

Q ss_pred             cCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCccc
Q 019059           23 KADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELY  102 (346)
Q Consensus        23 ~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~  102 (346)
                      .+.+++..+++|.    .++.+.+|++...   .....+.+|.+.|.+++|+|+++.|+++    +.|+.|++||+.   
T Consensus       104 ~~~~~~~~l~~~~----~dg~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~----s~d~~i~iwd~~---  169 (420)
T 3vl1_A          104 TAKLQMRRFILGT----TEGDIKVLDSNFN---LQREIDQAHVSEITKLKFFPSGEALISS----SQDMQLKIWSVK---  169 (420)
T ss_dssp             EECSSSCEEEEEE----TTSCEEEECTTSC---EEEEETTSSSSCEEEEEECTTSSEEEEE----ETTSEEEEEETT---
T ss_pred             EEecCCCEEEEEE----CCCCEEEEeCCCc---ceeeecccccCccEEEEECCCCCEEEEE----eCCCeEEEEeCC---
Confidence            4566777787774    5788999987643   2335556899999999999999888875    689999999998   


Q ss_pred             CCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeeccc------------------
Q 019059          103 GQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQS------------------  164 (346)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~------------------  164 (346)
                            ..+.+..+..|...|.+++|+|+++. +++++.|+.|++||+.+++....+.....                  
T Consensus       170 ------~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  242 (420)
T 3vl1_A          170 ------DGSNPRTLIGHRATVTDIAIIDRGRN-VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQL  242 (420)
T ss_dssp             ------TCCCCEEEECCSSCEEEEEEETTTTE-EEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSC
T ss_pred             ------CCcCceEEcCCCCcEEEEEEcCCCCE-EEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCccee
Confidence                  66777888999999999999999984 77778899999999987654333322110                  


Q ss_pred             -CCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEccc
Q 019059          165 -SGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRM  240 (346)
Q Consensus       165 -~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  240 (346)
                       ..+...+.+++|+|+++.+++++.|+.|++||+++++....+...|   +.+++|+|++..++++++.||.|++||+++
T Consensus       243 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~  322 (420)
T 3vl1_A          243 HEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRS  322 (420)
T ss_dssp             GGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred             eecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCC
Confidence             0012356667788999999999999999999999998887776555   999999999976899999999999999998


Q ss_pred             CCcceeeecC-CCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeE
Q 019059          241 LKAPIQELPG-HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYG  319 (346)
Q Consensus       241 ~~~~~~~~~~-~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  319 (346)
                      ...++..+.. |...+.++.+ +++ .+|++++.|+.|++||+.........          ........+..|...|.+
T Consensus       323 ~~~~~~~~~~~~~~~v~~~~~-~~~-~~l~s~~~d~~v~iw~~~~~~~~~~~----------~~~~~~~~~~~~~~~v~~  390 (420)
T 3vl1_A          323 PECPVGEFLINEGTPINNVYF-AAG-ALFVSSGFDTSIKLDIISDPESERPA----------IEFETPTFLVSNDDAVSQ  390 (420)
T ss_dssp             TTSCSEEEEESTTSCEEEEEE-ETT-EEEEEETTTEEEEEEEECCTTCCSCE----------ECTTSCEEECCSSCCCCE
T ss_pred             CcCchhhhhccCCCCceEEEe-CCC-CEEEEecCCccEEEEeccCCCCCccc----------eeccCccEEccCCcceEE
Confidence            6666777776 6677888855 567 89999999999999999862111000          001122234567888999


Q ss_pred             EEeCCCCCc--EEEEeecCCeEEEeeecC
Q 019059          320 LAWSSREPW--IFASLSYDGRVRNHMLEK  346 (346)
Q Consensus       320 ~~~~~~~~~--~l~s~~~d~~v~vw~~~~  346 (346)
                      ++|+|+++.  .+++++.++.+.+|+++.
T Consensus       391 ~~~s~~~~~~g~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          391 FCYVSDDESNGEVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             EEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred             EEEccCCCCcceEEEEcCCceEEEEeccC
Confidence            999999861  355666689999999863

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=2.7e-37  Score=269.65  Aligned_cols=276  Identities=11%  Similarity=0.130  Sum_probs=219.2

Q ss_pred             eccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCc
Q 019059           21 DVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPE  100 (346)
Q Consensus        21 ~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~  100 (346)
                      .+.+++++..++.|.    .++.+++|++.....   ...+..| ..+....|+|+++.|+++    +.|+.|++||+. 
T Consensus        61 ~~~~s~~g~~l~~~~----~d~~v~i~d~~~~~~---~~~~~~~-~~~~~~~~~~~~~~l~~~----~~dg~i~iwd~~-  127 (420)
T 3vl1_A           61 GNTFEKVGSHLYKAR----LDGHDFLFNTIIRDG---SKMLKRA-DYTAVDTAKLQMRRFILG----TTEGDIKVLDSN-  127 (420)
T ss_dssp             TCEEEEEETTEEEEE----ETTEEEEEECCSEET---TTTSCSC-CEEEEEEECSSSCEEEEE----ETTSCEEEECTT-
T ss_pred             ceeeeecCCeEEEEE----cCCcEEEEEecccce---eeEEecC-CceEEEEEecCCCEEEEE----ECCCCEEEEeCC-
Confidence            455667777777775    468999998765321   1222333 445556789999888875    689999999998 


Q ss_pred             ccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCC
Q 019059          101 LYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD  180 (346)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  180 (346)
                              ..+....+..|...|.+++|+|+++ ++++++.|+.|++||+.+++....+     .+|...|.+++|+|++
T Consensus       128 --------~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~-----~~h~~~v~~~~~~~~~  193 (420)
T 3vl1_A          128 --------FNLQREIDQAHVSEITKLKFFPSGE-ALISSSQDMQLKIWSVKDGSNPRTL-----IGHRATVTDIAIIDRG  193 (420)
T ss_dssp             --------SCEEEEETTSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCCCEEE-----ECCSSCEEEEEEETTT
T ss_pred             --------CcceeeecccccCccEEEEECCCCC-EEEEEeCCCeEEEEeCCCCcCceEE-----cCCCCcEEEEEEcCCC
Confidence                    5677777789999999999999998 4777788999999999987655443     2466799999999999


Q ss_pred             CcEEEEecCCeEEEEEccCCCccceeecc-------------------------c-eeEEEeCCCCCcEEEEecCCCeEE
Q 019059          181 VNAVAATCESSVQFWDLRSMGKTNSIEHA-------------------------H-VRNVDYDTKKKHLLVTAADESGIH  234 (346)
Q Consensus       181 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-------------------------~-v~~~~~~~~~~~~l~~~~~dg~i~  234 (346)
                      +.+++++.|+.|++||+++++....+...                         . +.+++|+|++. ++++++.||.|+
T Consensus       194 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~  272 (420)
T 3vl1_A          194 RNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGK-YVIAGHVSGVIT  272 (420)
T ss_dssp             TEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTE-EEEEEETTSCEE
T ss_pred             CEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCC-EEEEEcCCCeEE
Confidence            99999999999999999998877766521                         1 45566789997 899999999999


Q ss_pred             EEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccc-cccccccc-
Q 019059          235 LWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRAN-SLLNSYSD-  312 (346)
Q Consensus       235 i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-  312 (346)
                      +||+++..........|...|.+++|+|++..+|++++.||.|++||+++                   + .++..+.. 
T Consensus       273 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~-------------------~~~~~~~~~~~  333 (420)
T 3vl1_A          273 VHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRS-------------------PECPVGEFLIN  333 (420)
T ss_dssp             EEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC-------------------TTSCSEEEEES
T ss_pred             EEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCC-------------------CcCchhhhhcc
Confidence            99999855444444568899999999999933999999999999999997                   4 34566665 


Q ss_pred             ccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          313 YEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       313 ~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      |...|.++.|. +++ +|++++.|+.|++|++.
T Consensus       334 ~~~~v~~~~~~-~~~-~l~s~~~d~~v~iw~~~  364 (420)
T 3vl1_A          334 EGTPINNVYFA-AGA-LFVSSGFDTSIKLDIIS  364 (420)
T ss_dssp             TTSCEEEEEEE-TTE-EEEEETTTEEEEEEEEC
T ss_pred             CCCCceEEEeC-CCC-EEEEecCCccEEEEecc
Confidence            66778888665 565 89999999999999975

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=7.9e-38  Score=269.23  Aligned_cols=242  Identities=12%  Similarity=0.158  Sum_probs=193.2

Q ss_pred             ccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccc--eeeeeeeccCCceEEEEeecCCCCcEEEEe
Q 019059           63 SHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQL--ERIAALDAHVGKINCVLWWSSGRHDKLVSI  140 (346)
Q Consensus        63 ~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  140 (346)
                      .+.++|++++|+|+++.|++    ++.|+.|++|++.         ..  +.+..+..|...|.+++|+|+++. +++++
T Consensus         9 ~~~~~v~~~~~s~~g~~l~~----~~~d~~i~iw~~~---------~~~~~~~~~~~~h~~~v~~~~~s~~~~~-l~s~s   74 (377)
T 3dwl_C            9 ILPKPSYEHAFNSQRTEFVT----TTATNQVELYEQD---------GNGWKHARTFSDHDKIVTCVDWAPKSNR-IVTCS   74 (377)
T ss_dssp             ECSSCCSCCEECSSSSEEEC----CCSSSCBCEEEEE---------TTEEEECCCBCCCSSCEEEEEECTTTCC-EEEEE
T ss_pred             cCCCcEEEEEECCCCCEEEE----ecCCCEEEEEEcc---------CCceEEEEEEecCCceEEEEEEeCCCCE-EEEEe
Confidence            36689999999999988877    4789999999998         44  677888899999999999999984 77778


Q ss_pred             cCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCc---cceeeccc---eeEE
Q 019059          141 DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGK---TNSIEHAH---VRNV  214 (346)
Q Consensus       141 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~---v~~~  214 (346)
                      .|+.|++||+.++.......  ...+|...+.+++|+|+++.+++++.|+.|++||+++++.   ...+...|   |.++
T Consensus        75 ~d~~v~vwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~  152 (377)
T 3dwl_C           75 QDRNAYVYEKRPDGTWKQTL--VLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSL  152 (377)
T ss_dssp             TTSSEEEC------CCCCEE--ECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEE
T ss_pred             CCCeEEEEEcCCCCceeeee--EecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEE
Confidence            89999999998765111111  1234677999999999999999999999999999998873   55555325   9999


Q ss_pred             EeCCCCCcEEEEecCCCeEEEEEcccC-----------------CcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeE
Q 019059          215 DYDTKKKHLLVTAADESGIHLWDLRML-----------------KAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTV  277 (346)
Q Consensus       215 ~~~~~~~~~l~~~~~dg~i~i~d~~~~-----------------~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i  277 (346)
                      +|+|++. +|++++.|+.|++||++..                 ..++..+ .|...|.+++|+|++ .+|++++.|+.|
T Consensus       153 ~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~-~~l~~~~~d~~i  229 (377)
T 3dwl_C          153 DWHPNNV-LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSG-NALAYAGHDSSV  229 (377)
T ss_dssp             EECTTSS-EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTS-SCEEEEETTTEE
T ss_pred             EEcCCCC-EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCC-CEEEEEeCCCcE
Confidence            9999998 8999999999999998521                 2345556 899999999999999 999999999999


Q ss_pred             EEEecCCCCCCCCCcccccCCcccccccc----ccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059          278 NLWLVSTSNHDELPSESLVESPNQRANSL----LNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       278 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~  344 (346)
                      ++||++.                   ++.    +..+.+|...|.+++|+|+++ +|++++.|+.+ +|+.
T Consensus       230 ~iwd~~~-------------------~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~-~~~~  279 (377)
T 3dwl_C          230 TIAYPSA-------------------PEQPPRALITVKLSQLPLRSLLWANESA-IVAAGYNYSPI-LLQG  279 (377)
T ss_dssp             C-CEECS-------------------TTSCEEECCCEECSSSCEEEEEEEETTE-EEEEESSSSEE-EECC
T ss_pred             EEEECCC-------------------CCCcceeeEeecCCCCceEEEEEcCCCC-EEEEEcCCcEE-EEEe
Confidence            9999998                   555    788889999999999999996 88888866666 6654

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-37  Score=276.52  Aligned_cols=256  Identities=12%  Similarity=0.064  Sum_probs=193.8

Q ss_pred             eccccceEEeeecCCC---------CceEEEEe---------------ecCCcceEEEEecCcccCCCCCccceeeeeee
Q 019059           62 FSHPNEIWDLSSCPFD---------QRIFSTVF---------------STGESYGAAIWQIPELYGQLNSPQLERIAALD  117 (346)
Q Consensus        62 ~~h~~~v~~~~~~~~~---------~~l~~~~~---------------~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~  117 (346)
                      ..+.+.|.+++|+|++         ++|+++..               +++.|++|+||++....     ........+.
T Consensus       130 ~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~-----~~~~~~~~l~  204 (524)
T 2j04_B          130 YNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTST-----LHCVKVQTIV  204 (524)
T ss_dssp             EECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTT-----CCEEEEEEEE
T ss_pred             EECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCC-----CCceEEEEEE
Confidence            3468899999999986         55665442               25678999999987210     0111224466


Q ss_pred             ccCCceEEEEeecCC-----CCcEEEEecCCeEEEEEcCCCCCCce----e--eecccCCCceeeEEEEeCCCCCcEEEE
Q 019059          118 AHVGKINCVLWWSSG-----RHDKLVSIDEENIFLWSLDCSNKNAQ----V--QSKQSSGMLHYLSGGAWDPHDVNAVAA  186 (346)
Q Consensus       118 ~~~~~i~~~~~~~~~-----~~~~~~~~~d~~i~vwd~~~~~~~~~----~--~~~~~~~~~~~v~~~~~~~~~~~l~~~  186 (346)
                      .|.+.|.+++|+|++     ..++++++.|+.|++||+.++.....    .  ......+|...|.+++|+|+ ..|+++
T Consensus       205 ~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasg  283 (524)
T 2j04_B          205 HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCG  283 (524)
T ss_dssp             ECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEE
T ss_pred             ecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEE
Confidence            778899999999972     23566678899999999986542210    0  00123456778999999985 479999


Q ss_pred             ecCCeEEEEEccCCCccceeeccc---eeEE--EeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCc--ceEEEE
Q 019059          187 TCESSVQFWDLRSMGKTNSIEHAH---VRNV--DYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTH--WTWAVC  259 (346)
Q Consensus       187 ~~d~~i~i~d~~~~~~~~~~~~~~---v~~~--~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~v~~v~  259 (346)
                      +.||+|++||++++........+|   |.+|  +|+|++..+|++++.|++|++||+++ ..++..+.+|..  .|.+++
T Consensus       284 s~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~-~~~~~~~~~~~~~~~v~~v~  362 (524)
T 2j04_B          284 FKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKD-IATTKTTVSRFRGSNLVPVV  362 (524)
T ss_dssp             ETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGG-HHHHCEEEEECSCCSCCCEE
T ss_pred             eCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCC-CCcccccccccccCcccceE
Confidence            999999999999875443322355   9999  67888723899999999999999997 445566666653  588999


Q ss_pred             eCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeE
Q 019059          260 CNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRV  339 (346)
Q Consensus       260 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v  339 (346)
                      |+|++ ..|++++.|++|++||++.                   +.++..+.+|...|++++|+|+++ +|++|+.|++|
T Consensus       363 fsp~~-~~l~s~~~d~tv~lwd~~~-------------------~~~~~~l~gH~~~V~sva~Sp~g~-~l~Sgs~Dgtv  421 (524)
T 2j04_B          363 YCPQI-YSYIYSDGASSLRAVPSRA-------------------AFAVHPLVSRETTITAIGVSRLHP-MVLAGSADGSL  421 (524)
T ss_dssp             EETTT-TEEEEECSSSEEEEEETTC-------------------TTCCEEEEECSSCEEEEECCSSCC-BCEEEETTTEE
T ss_pred             eCCCc-CeEEEeCCCCcEEEEECcc-------------------cccceeeecCCCceEEEEeCCCCC-eEEEEECCCEE
Confidence            99999 8899999999999999998                   777788889999999999999998 89999999999


Q ss_pred             EEeeec
Q 019059          340 RNHMLE  345 (346)
Q Consensus       340 ~vw~~~  345 (346)
                      ++|++.
T Consensus       422 ~lwd~~  427 (524)
T 2j04_B          422 IITNAA  427 (524)
T ss_dssp             ECCBSC
T ss_pred             EEEech
Confidence            999964

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.1e-36  Score=261.39  Aligned_cols=244  Identities=12%  Similarity=0.145  Sum_probs=207.6

Q ss_pred             eccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccce--eeeeeeccCCceEEEEeecCCCCcEEEE
Q 019059           62 FSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLE--RIAALDAHVGKINCVLWWSSGRHDKLVS  139 (346)
Q Consensus        62 ~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~  139 (346)
                      ..|.++|.+++|+|+++.++++    +.|+.|++|++.         ..+  .+..+..|...|.+++|+|+++. ++++
T Consensus         5 ~~~~~~i~~~~~s~~~~~l~~~----~~d~~v~i~~~~---------~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~~~   70 (372)
T 1k8k_C            5 SFLVEPISCHAWNKDRTQIAIC----PNNHEVHIYEKS---------GNKWVQVHELKEHNGQVTGVDWAPDSNR-IVTC   70 (372)
T ss_dssp             ESCSSCCCEEEECTTSSEEEEE----CSSSEEEEEEEE---------TTEEEEEEEEECCSSCEEEEEEETTTTE-EEEE
T ss_pred             cccCCCeEEEEECCCCCEEEEE----eCCCEEEEEeCC---------CCcEEeeeeecCCCCcccEEEEeCCCCE-EEEE
Confidence            3588999999999999888774    689999999998         344  78888899999999999999884 7777


Q ss_pred             ecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCc---cceeeccc---eeE
Q 019059          140 IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGK---TNSIEHAH---VRN  213 (346)
Q Consensus       140 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~---v~~  213 (346)
                      +.|+.|++||+.+++......   ...|...+.+++|+|+++.+++++.|+.|++||++.++.   ...+..+|   |.+
T Consensus        71 ~~dg~i~vwd~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~  147 (372)
T 1k8k_C           71 GTDRNAYVWTLKGRTWKPTLV---ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLS  147 (372)
T ss_dssp             ETTSCEEEEEEETTEEEEEEE---CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEE
T ss_pred             cCCCeEEEEECCCCeeeeeEE---eecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeE
Confidence            889999999998654222222   234666899999999999999999999999999998874   33333344   999


Q ss_pred             EEeCCCCCcEEEEecCCCeEEEEEccc-----------------CCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCe
Q 019059          214 VDYDTKKKHLLVTAADESGIHLWDLRM-----------------LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDST  276 (346)
Q Consensus       214 ~~~~~~~~~~l~~~~~dg~i~i~d~~~-----------------~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~  276 (346)
                      ++|+|++. ++++++.|+.|++||++.                 ...++..+..|...|.+++|+|++ .+|++++.|+.
T Consensus       148 ~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~  225 (372)
T 1k8k_C          148 LDWHPNSV-LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG-SRVAWVSHDST  225 (372)
T ss_dssp             EEECTTSS-EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS-SEEEEEETTTE
T ss_pred             EEEcCCCC-EEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCC-CEEEEEeCCCE
Confidence            99999998 899999999999999641                 245677888899999999999999 99999999999


Q ss_pred             EEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          277 VNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       277 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      |++||+++                   ++++..+..|...|.+++|+|++. +|+++ .|+.|++|++.
T Consensus       226 i~i~d~~~-------------------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~-~d~~i~i~~~~  273 (372)
T 1k8k_C          226 VCLADADK-------------------KMAVATLASETLPLLAVTFITESS-LVAAG-HDCFPVLFTYD  273 (372)
T ss_dssp             EEEEEGGG-------------------TTEEEEEECSSCCEEEEEEEETTE-EEEEE-TTSSCEEEEEE
T ss_pred             EEEEECCC-------------------CceeEEEccCCCCeEEEEEecCCC-EEEEE-eCCeEEEEEcc
Confidence            99999998                   788888999999999999999986 77666 89999999985

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=8e-36  Score=259.03  Aligned_cols=265  Identities=17%  Similarity=0.211  Sum_probs=208.2

Q ss_pred             eeeeccccceEEeeecC-CCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeee-------------eccCCceE
Q 019059           59 EGLFSHPNEIWDLSSCP-FDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL-------------DAHVGKIN  124 (346)
Q Consensus        59 ~~~~~h~~~v~~~~~~~-~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~-------------~~~~~~i~  124 (346)
                      ..+.+|.+.|++++|+| +++.|+++    +.|+.|++|++..         ......+             ..|...|.
T Consensus        37 ~~~~~h~~~v~~~~~s~~~~~~l~~~----~~dg~i~iw~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~v~  103 (408)
T 4a11_B           37 DVERIHGGGINTLDIEPVEGRYMLSG----GSDGVIVLYDLEN---------SSRQSYYTCKAVCSIGRDHPDVHRYSVE  103 (408)
T ss_dssp             EECCCCSSCEEEEEECTTTCCEEEEE----ETTSCEEEEECCC---------CSSSSCEEECEEEEECTTCTTCCSSCEE
T ss_pred             eeeeccCCcEEEEEEecCCCCEEEEE----cCCCeEEEEECCC---------CcccceEeccccccccccccccCCCcEE
Confidence            44567999999999999 88888875    6899999999983         2222222             25899999


Q ss_pred             EEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCC---CcEEEEecCCeEEEEEccCCC
Q 019059          125 CVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD---VNAVAATCESSVQFWDLRSMG  201 (346)
Q Consensus       125 ~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~i~i~d~~~~~  201 (346)
                      +++|+|++..++++++.|+.|++||+.+++......      +...+..+.|+|.+   ..+++++.++.|++||+++++
T Consensus       104 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~  177 (408)
T 4a11_B          104 TVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN------FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS  177 (408)
T ss_dssp             EEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE------CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC
T ss_pred             EEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc------CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc
Confidence            999999555568888889999999998765333322      23378888888854   489999999999999999998


Q ss_pred             ccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeee---------------cCCCcceEEEEeCCC
Q 019059          202 KTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL---------------PGHTHWTWAVCCNPE  263 (346)
Q Consensus       202 ~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---------------~~~~~~v~~v~~~~~  263 (346)
                      ....+. .|   |.+++|+|++++++++++.||.|++||++....++..+               ..|...|.+++|+|+
T Consensus       178 ~~~~~~-~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  256 (408)
T 4a11_B          178 CSHILQ-GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSD  256 (408)
T ss_dssp             CCEEEC-CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTT
T ss_pred             eeeeec-CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCC
Confidence            887776 34   99999999998679999999999999998755444444               578899999999999


Q ss_pred             CCcEEEEecCCCeEEEEecCCCCCCCCCccccc-----CC-----------------------ccccccccccccccccc
Q 019059          264 YDGFILSAGTDSTVNLWLVSTSNHDELPSESLV-----ES-----------------------PNQRANSLLNSYSDYED  315 (346)
Q Consensus       264 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-----~~-----------------------~~~~~~~~~~~~~~~~~  315 (346)
                      + .+|++++.|+.|++||+++............     ..                       .....++++..+.+|..
T Consensus       257 ~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~  335 (408)
T 4a11_B          257 G-LHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYK  335 (408)
T ss_dssp             S-SEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSS
T ss_pred             C-CEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCC
Confidence            9 9999999999999999987533211100000     00                       00133566777888999


Q ss_pred             eeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          316 SVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       316 ~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      .|++++|+|+++ +|++++.||.|++|+++
T Consensus       336 ~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~  364 (408)
T 4a11_B          336 TVDCCVFQSNFQ-ELYSGSRDCNILAWVPS  364 (408)
T ss_dssp             CEEEEEEETTTT-EEEEEETTSCEEEEEEC
T ss_pred             eEEEEEEcCCCC-EEEEECCCCeEEEEeCC
Confidence            999999999997 89999999999999986

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.6e-36  Score=250.38  Aligned_cols=283  Identities=14%  Similarity=0.169  Sum_probs=228.5

Q ss_pred             eeeecccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEee
Q 019059            7 GIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFS   86 (346)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~   86 (346)
                      .+...+..+...+..+.+ +++..++.|+    .++.+.+|++...   .....+..|...|.+++|+|+++.++++   
T Consensus         9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~----~dg~v~vw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~---   77 (313)
T 3odt_A            9 QLSATLKGHDQDVRDVVA-VDDSKVASVS----RDGTVRLWSKDDQ---WLGTVVYTGQGFLNSVCYDSEKELLLFG---   77 (313)
T ss_dssp             EEEEEECCCSSCEEEEEE-EETTEEEEEE----TTSEEEEEEESSS---EEEEEEEECSSCEEEEEEETTTTEEEEE---
T ss_pred             HHHHHhhCCCCCcEEEEe-cCCCEEEEEE----cCCcEEEEECCCC---EEEEEeecCCccEEEEEECCCCCEEEEe---
Confidence            444556666667777777 7777888774    6789999999653   2345667899999999999999888885   


Q ss_pred             cCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCC
Q 019059           87 TGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG  166 (346)
Q Consensus        87 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~  166 (346)
                       +.|+.|++|++..      ....+.+..+..|...|.+++|.  +. .+++++.|+.|++||.  ......     ...
T Consensus        78 -~~dg~i~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~~--~~-~l~~~~~d~~i~~~d~--~~~~~~-----~~~  140 (313)
T 3odt_A           78 -GKDTMINGVPLFA------TSGEDPLYTLIGHQGNVCSLSFQ--DG-VVISGSWDKTAKVWKE--GSLVYN-----LQA  140 (313)
T ss_dssp             -ETTSCEEEEETTC------CTTSCC-CEECCCSSCEEEEEEE--TT-EEEEEETTSEEEEEET--TEEEEE-----EEC
T ss_pred             -cCCCeEEEEEeee------cCCCCcccchhhcccCEEEEEec--CC-EEEEEeCCCCEEEEcC--CcEEEe-----ccc
Confidence             6899999999873      11345667788999999999993  44 4778888999999992  221111     123


Q ss_pred             CceeeEEEEeCC-CCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCC
Q 019059          167 MLHYLSGGAWDP-HDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK  242 (346)
Q Consensus       167 ~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  242 (346)
                      |...+.++.|.| ++..+++++.|+.|++||.  .+....+...+   +.+++|+|++.  +++++.|+.|++||+++ .
T Consensus       141 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~dg~i~i~d~~~-~  215 (313)
T 3odt_A          141 HNASVWDAKVVSFSENKFLTASADKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGH--FISCSNDGLIKLVDMHT-G  215 (313)
T ss_dssp             CSSCEEEEEEEETTTTEEEEEETTSCEEEEET--TEEEEEECSSCSSCEEEEEEEETTE--EEEEETTSEEEEEETTT-C
T ss_pred             CCCceeEEEEccCCCCEEEEEECCCCEEEEec--CceEEEEeccCcccEEEEEEcCCCe--EEEccCCCeEEEEECCc-h
Confidence            566899999988 8899999999999999993  33444444323   99999999985  88899999999999997 5


Q ss_pred             cceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEe
Q 019059          243 APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAW  322 (346)
Q Consensus       243 ~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  322 (346)
                      .++..+..|...|++++|+|++ . |++++.|+.|++||+++                   ++++..+..|...|.+++|
T Consensus       216 ~~~~~~~~~~~~i~~~~~~~~~-~-l~~~~~dg~v~iwd~~~-------------------~~~~~~~~~~~~~i~~~~~  274 (313)
T 3odt_A          216 DVLRTYEGHESFVYCIKLLPNG-D-IVSCGEDRTVRIWSKEN-------------------GSLKQVITLPAISIWSVDC  274 (313)
T ss_dssp             CEEEEEECCSSCEEEEEECTTS-C-EEEEETTSEEEEECTTT-------------------CCEEEEEECSSSCEEEEEE
T ss_pred             hhhhhhhcCCceEEEEEEecCC-C-EEEEecCCEEEEEECCC-------------------CceeEEEeccCceEEEEEE
Confidence            6888899999999999999998 4 88999999999999998                   7888888899999999999


Q ss_pred             CCCCCcEEEEeecCCeEEEeeec
Q 019059          323 SSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       323 ~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      +|+++  +++++.|+.|++|+++
T Consensus       275 ~~~~~--~~~~~~dg~i~iw~~~  295 (313)
T 3odt_A          275 MSNGD--IIVGSSDNLVRIFSQE  295 (313)
T ss_dssp             CTTSC--EEEEETTSCEEEEESC
T ss_pred             ccCCC--EEEEeCCCcEEEEeCC
Confidence            99996  5678999999999986

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=9.8e-36  Score=252.34  Aligned_cols=251  Identities=16%  Similarity=0.254  Sum_probs=204.5

Q ss_pred             EeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEE
Q 019059           58 CEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKL  137 (346)
Q Consensus        58 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  137 (346)
                      ..++.+|.+.|++|+|+|++..++++   ++.|++|+|||+....    .....+...+.+|...|.+++|+|+++. ++
T Consensus        31 ~~tL~GH~~~V~~v~~sp~~~~~l~S---~s~D~~i~vWd~~~~~----~~~~~~~~~l~~h~~~V~~~~~s~dg~~-l~  102 (340)
T 4aow_A           31 RGTLKGHNGWVTQIATTPQFPDMILS---ASRDKTIIMWKLTRDE----TNYGIPQRALRGHSHFVSDVVISSDGQF-AL  102 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTCTTEEEE---EETTSCEEEEEECCSS----SCSEEEEEEECCCSSCEEEEEECTTSSE-EE
T ss_pred             EEEECCccCCEEEEEEeCCCCCEEEE---EcCCCeEEEEECCCCC----cccceeeEEEeCCCCCEEEEEECCCCCE-EE
Confidence            35688999999999999986555544   3799999999997321    1234566788899999999999999984 77


Q ss_pred             EEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEE
Q 019059          138 VSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNV  214 (346)
Q Consensus       138 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~  214 (346)
                      +++.|+.|++|+...........     .+...+....+++++..+++++.|+.+++||+...........+|   +..+
T Consensus       103 s~~~d~~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~  177 (340)
T 4aow_A          103 SGSWDGTLRLWDLTTGTTTRRFV-----GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCV  177 (340)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEE-----CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEE
T ss_pred             EEcccccceEEeecccceeeeec-----CCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccce
Confidence            77889999999998654322222     234477888999999999999999999999998766544444344   8999


Q ss_pred             EeCCCCCc-EEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcc
Q 019059          215 DYDTKKKH-LLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSE  293 (346)
Q Consensus       215 ~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  293 (346)
                      +|++++.. ++++++.|+.|++||+++ ..++..+.+|...|++++|+|++ .+|++++.|+.|++||++.         
T Consensus       178 ~~~~~~~~~~~~s~~~d~~i~i~d~~~-~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~Dg~i~iwd~~~---------  246 (340)
T 4aow_A          178 RFSPNSSNPIIVSCGWDKLVKVWNLAN-CKLKTNHIGHTGYLNTVTVSPDG-SLCASGGKDGQAMLWDLNE---------  246 (340)
T ss_dssp             EECSCSSSCEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTS-SEEEEEETTCEEEEEETTT---------
T ss_pred             EEccCCCCcEEEEEcCCCEEEEEECCC-CceeeEecCCCCcEEEEEECCCC-CEEEEEeCCCeEEEEEecc---------
Confidence            99877542 678899999999999997 56788899999999999999999 9999999999999999998         


Q ss_pred             cccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          294 SLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                                .+++..+..+ ..|.++.|+|++.  +++++.|+.|++||++
T Consensus       247 ----------~~~~~~~~~~-~~v~~~~~~~~~~--~~~~~~d~~i~iwd~~  285 (340)
T 4aow_A          247 ----------GKHLYTLDGG-DIINALCFSPNRY--WLCAATGPSIKIWDLE  285 (340)
T ss_dssp             ----------TEEEEEEECS-SCEEEEEECSSSS--EEEEEETTEEEEEETT
T ss_pred             ----------CceeeeecCC-ceEEeeecCCCCc--eeeccCCCEEEEEECC
Confidence                      7777777655 4699999999874  5677789999999985

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=3.9e-35  Score=246.35  Aligned_cols=272  Identities=15%  Similarity=0.186  Sum_probs=216.6

Q ss_pred             CCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccC
Q 019059           24 ADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYG  103 (346)
Q Consensus        24 ~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~  103 (346)
                      +++++ .+++|     .++.|++|++... ..+......+|...|.+++|+|++++++++    +.|+.|++|+++    
T Consensus        33 WS~~~-~lAvg-----~D~tV~iWd~~tg-~~~~~~~~~~~~~~V~~v~~~~~~~~l~sg----s~Dg~v~iw~~~----   97 (318)
T 4ggc_A           33 WSSGN-VLAVA-----LDNSVYLWSASSG-DILQLLQMEQPGEYISSVAWIKEGNYLAVG----TSSAEVQLWDVQ----   97 (318)
T ss_dssp             ECTTS-EEEEE-----ETTEEEEEETTTC-CEEEEEECCSTTCCEEEEEECTTSSEEEEE----ETTSEEEEEETT----
T ss_pred             ECCCC-EEEEE-----eCCEEEEEECCCC-CEEEEEEecCCCCeEEEEEECCCCCEEEEE----ECCCcEEEeecC----
Confidence            34443 55555     3789999998764 333334556788999999999999988885    699999999998    


Q ss_pred             CCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcE
Q 019059          104 QLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNA  183 (346)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  183 (346)
                           ..+.+..+.+|...+.++.+.  +. ++++++.++.+++|+...........    .+|...+..+.+.++++.+
T Consensus        98 -----~~~~~~~~~~h~~~~~~~~~~--~~-~l~s~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l  165 (318)
T 4ggc_A           98 -----QQKRLRNMTSHSARVGSLSWN--SY-ILSSGSRSGHIHHHDVRVAEHHVATL----SGHSQEVCGLRWAPDGRHL  165 (318)
T ss_dssp             -----TTEEEEEEECCSSCEEEEEEE--TT-EEEEEETTSEEEEEETTSSSCEEEEE----ECCSSCEEEEEECTTSSEE
T ss_pred             -----CceeEEEecCccceEEEeecC--CC-EEEEEecCCceEeeecCCCceeEEEE----cCccCceEEEEEcCCCCEE
Confidence                 778889999999888876665  44 46777889999999988654332222    3466689999999999999


Q ss_pred             EEEecCCeEEEEEccCCCccceee---ccc---eeEEEeCCCCCcEE--EEecCCCeEEEEEcccCCcceeeecCCCcce
Q 019059          184 VAATCESSVQFWDLRSMGKTNSIE---HAH---VRNVDYDTKKKHLL--VTAADESGIHLWDLRMLKAPIQELPGHTHWT  255 (346)
Q Consensus       184 ~~~~~d~~i~i~d~~~~~~~~~~~---~~~---v~~~~~~~~~~~~l--~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v  255 (346)
                      ++++.|+.|++||+++++......   ..+   +.+++++|++..++  ++++.++.|++||.+. ..... ...+...+
T Consensus       166 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~-~~~~~-~~~~~~~v  243 (318)
T 4ggc_A          166 ASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS-GACLS-AVDAHSQV  243 (318)
T ss_dssp             EEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTT-CCEEE-EEECSSCE
T ss_pred             EEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccc-ccccc-cccceeee
Confidence            999999999999999876432221   122   99999999887554  4567889999999986 33333 34577889


Q ss_pred             EEEEeCCCCCcEEEE--ecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEe
Q 019059          256 WAVCCNPEYDGFILS--AGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASL  333 (346)
Q Consensus       256 ~~v~~~~~~~~~l~s--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  333 (346)
                      ..+.|+|++ ..+++  ++.|+.|+|||+++                   ++++.++.+|.+.|++++|+|+++ +|+++
T Consensus       244 ~~~~~~~~~-~~~~~~sg~~d~~i~iwd~~~-------------------~~~~~~l~gH~~~V~~l~~spdg~-~l~S~  302 (318)
T 4ggc_A          244 CSILWSPHY-KELISGHGFAQNQLVIWKYPT-------------------MAKVAELKGHTSRVLSLTMSPDGA-TVASA  302 (318)
T ss_dssp             EEEEEETTT-TEEEEEECTTTCCEEEEETTT-------------------CCEEEEECCCSSCEEEEEECTTSS-CEEEE
T ss_pred             eeeeecccc-cceEEEEEcCCCEEEEEECCC-------------------CcEEEEEcCCCCCEEEEEEcCCCC-EEEEE
Confidence            999999999 65554  44799999999998                   899999999999999999999997 89999


Q ss_pred             ecCCeEEEeeec
Q 019059          334 SYDGRVRNHMLE  345 (346)
Q Consensus       334 ~~d~~v~vw~~~  345 (346)
                      +.|++|+|||+.
T Consensus       303 s~D~~v~iWd~~  314 (318)
T 4ggc_A          303 AADETLRLWRCF  314 (318)
T ss_dssp             ETTTEEEEECCS
T ss_pred             ecCCeEEEEECC
Confidence            999999999984

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.9e-36  Score=261.19  Aligned_cols=254  Identities=13%  Similarity=0.192  Sum_probs=207.7

Q ss_pred             EeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecC----C-
Q 019059           58 CEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSS----G-  132 (346)
Q Consensus        58 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~-  132 (346)
                      ...+.+|.+.|++++|+|  +.|+++    +.|+.|++|++.....   ......+..+..|...|.+++|+|+    + 
T Consensus         9 ~~~~~~h~~~i~~~~~~~--~~l~s~----~~dg~i~iw~~~~~~~---~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~   79 (397)
T 1sq9_A            9 ANAGKAHDADIFSVSACN--SFTVSC----SGDGYLKVWDNKLLDN---ENPKDKSYSHFVHKSGLHHVDVLQAIERDAF   79 (397)
T ss_dssp             EEESSCSSSCEEEEEECS--SEEEEE----ETTSEEEEEESBCCTT---CCGGGGEEEEECCTTCEEEEEEEEEEETTTE
T ss_pred             hhhhhhhhcCeEEEEecC--CeEEEE----cCCCEEEEEECCCccc---ccCCCcceEEecCCCcEEEEEEecccccCCc
Confidence            456778999999999999  566664    6899999999983110   1112367788899999999999999    7 


Q ss_pred             --CCcEEEEecCCeEEEEEcCCCCCCceeeecccCCC-----ceeeEEEEeC----CCCCc-EEEEecCCeEEEEEccC-
Q 019059          133 --RHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGM-----LHYLSGGAWD----PHDVN-AVAATCESSVQFWDLRS-  199 (346)
Q Consensus       133 --~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~----~~~~~-l~~~~~d~~i~i~d~~~-  199 (346)
                        . ++++++.|+.|++||+.++.............|     ...+.+++|+    |++.. +++++.|+.|++||+++ 
T Consensus        80 ~~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  158 (397)
T 1sq9_A           80 ELC-LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPF  158 (397)
T ss_dssp             EEE-EEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESS
T ss_pred             ccc-EEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcc
Confidence              7 477778899999999997765222222222334     4689999999    99999 99999999999999998 


Q ss_pred             -----CCccc-----eeec------cc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecC---C---Ccc
Q 019059          200 -----MGKTN-----SIEH------AH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG---H---THW  254 (346)
Q Consensus       200 -----~~~~~-----~~~~------~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~---~~~  254 (346)
                           ++.+.     .+..      .+   +.+++|+|++  ++++++.|+.|++||+++ ..++..+..   |   ...
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~h~~~~~~  235 (397)
T 1sq9_A          159 ADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELST-LRPLYNFESQHSMINNSNS  235 (397)
T ss_dssp             SSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTT-TEEEEEEECCC---CCCCC
T ss_pred             ccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCC-CceeEEEeccccccccCCc
Confidence                 66665     5531      23   9999999998  789999999999999997 567888888   8   999


Q ss_pred             eEEEEeCCCCCcEEEEecCC---CeEEEEecCCCCCCCCCcccccCCcccccccccccccc-------------ccceee
Q 019059          255 TWAVCCNPEYDGFILSAGTD---STVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD-------------YEDSVY  318 (346)
Q Consensus       255 v~~v~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~  318 (346)
                      |.+++|+|++ .+|++++.|   +.|++||+++                   ++++..+..             |...|.
T Consensus       236 i~~i~~~~~~-~~l~~~~~d~~~g~i~i~d~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~  295 (397)
T 1sq9_A          236 IRSVKFSPQG-SLLAIAHDSNSFGCITLYETEF-------------------GERIGSLSVPTHSSQASLGEFAHSSWVM  295 (397)
T ss_dssp             EEEEEECSST-TEEEEEEEETTEEEEEEEETTT-------------------CCEEEEECBC--------CCBSBSSCEE
T ss_pred             cceEEECCCC-CEEEEEecCCCCceEEEEECCC-------------------CcccceeccCcccccccccccccCCcEE
Confidence            9999999999 999999999   9999999998                   677777777             999999


Q ss_pred             EEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          319 GLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       319 ~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      +++|+|+++ +|++++.|+.|++||+.
T Consensus       296 ~~~~~~~~~-~l~~~~~dg~i~iwd~~  321 (397)
T 1sq9_A          296 SLSFNDSGE-TLCSAGWDGKLRFWDVK  321 (397)
T ss_dssp             EEEECSSSS-EEEEEETTSEEEEEETT
T ss_pred             EEEECCCCC-EEEEEeCCCeEEEEEcC
Confidence            999999997 89999999999999985

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.6e-37  Score=267.65  Aligned_cols=320  Identities=8%  Similarity=0.082  Sum_probs=219.1

Q ss_pred             eeeecc-cceeeEeeeccCCC-CcceEEEeecccCCCCeEEEEEecC---CCCeEEEeeeeccccceEEeeecCCCCceE
Q 019059            7 GIGYGL-KYQARCISDVKADT-DHTSFLTGTLSLKEENEVHLLRLSS---GGTELICEGLFSHPNEIWDLSSCPFDQRIF   81 (346)
Q Consensus         7 ~~~~~~-~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~   81 (346)
                      .++..+ +.+...|..+.+++ ++..++.|.    .++.|.+|++..   .. ........+|...|.+++|+|++..|+
T Consensus        53 ~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s----~dg~v~vwd~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~  127 (437)
T 3gre_A           53 KLIATLMENEPNSITSSAVSPGETPYLITGS----DQGVIKIWNLKEIIVGE-VYSSSLTYDCSSTVTQITMIPNFDAFA  127 (437)
T ss_dssp             CEEEEECTTTTSCEEEEEEECSSSCEEEEEE----TTSEEEEEEHHHHHTTC-CCSCSEEEECSSCEEEEEECTTSSEEE
T ss_pred             eEEeeeccCCCCceEEEEECCCCCCEEEEec----CCceEEEeECcccccCc-ccceeeeccCCCCEEEEEEeCCCCEEE
Confidence            344455 55567788888888 888888874    688999999876   22 111122336999999999999998888


Q ss_pred             EEEeecCCcceEEEEecCcccCCC--CCccceeeeeee--c--cCCceEEEE--eecCCCCcEEEEecCCeEEEEEcCCC
Q 019059           82 STVFSTGESYGAAIWQIPELYGQL--NSPQLERIAALD--A--HVGKINCVL--WWSSGRHDKLVSIDEENIFLWSLDCS  153 (346)
Q Consensus        82 ~~~~~~~~d~~i~vw~~~~~~~~~--~~~~~~~~~~~~--~--~~~~i~~~~--~~~~~~~~~~~~~~d~~i~vwd~~~~  153 (346)
                      ++    +.|+.|++||++......  .......+..+.  .  +...+.++.  +++++. .+++++.|+.|++||++++
T Consensus       128 s~----s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~  202 (437)
T 3gre_A          128 VS----SKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKS-LLVALTNLSRVIIFDIRTL  202 (437)
T ss_dssp             EE----ETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCE-EEEEEETTSEEEEEETTTC
T ss_pred             EE----eCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCC
Confidence            75    699999999995210000  000011222221  1  445666666  446676 4777788999999999876


Q ss_pred             CCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeC----CCCCcEEEE
Q 019059          154 NKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYD----TKKKHLLVT  226 (346)
Q Consensus       154 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~----~~~~~~l~~  226 (346)
                      +....+...   .|...|.+++|+|++..+++++.|+.|++||+++++++..+...+   |.+++|+    |++. ++++
T Consensus       203 ~~~~~~~~~---~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~-~l~s  278 (437)
T 3gre_A          203 ERLQIIENS---PRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSV-IVVG  278 (437)
T ss_dssp             CEEEEEECC---GGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEE-EEEE
T ss_pred             eeeEEEccC---CCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCcc-EEEE
Confidence            644443321   155689999999999999999999999999999998888775333   9999554    5665 8999


Q ss_pred             ecCCCeEEEEEcccCCcceeeecC--------------------------CCcceEEEEeCCCCCcEEEEecCCCeEEEE
Q 019059          227 AADESGIHLWDLRMLKAPIQELPG--------------------------HTHWTWAVCCNPEYDGFILSAGTDSTVNLW  280 (346)
Q Consensus       227 ~~~dg~i~i~d~~~~~~~~~~~~~--------------------------~~~~v~~v~~~~~~~~~l~s~~~d~~i~iw  280 (346)
                      ++.|+.|++||+++ ...+..+.+                          |...|++++|+ ++ .+|++++.|+.|++|
T Consensus       279 ~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~-~~l~s~~~d~~i~~w  355 (437)
T 3gre_A          279 GSSKTFLTIWNFVK-GHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND-KILLTDEATSSIVMF  355 (437)
T ss_dssp             ESTTEEEEEEETTT-TEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT-EEEEEEGGGTEEEEE
T ss_pred             EcCCCcEEEEEcCC-CcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc-eEEEecCCCCeEEEE
Confidence            99999999999986 434444442                          56678888898 66 899999999999999


Q ss_pred             ecCCCCCCCCCccc----ccCC--------------ccccccccccccccccceeeEEEeCCC-CCcEEEEeecCCeEEE
Q 019059          281 LVSTSNHDELPSES----LVES--------------PNQRANSLLNSYSDYEDSVYGLAWSSR-EPWIFASLSYDGRVRN  341 (346)
Q Consensus       281 d~~~~~~~~~~~~~----~~~~--------------~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~d~~v~v  341 (346)
                      |++++.........    ....              ..............|...|++++|+++ +..+|++++.||.|+|
T Consensus       356 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~i  435 (437)
T 3gre_A          356 SLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGI  435 (437)
T ss_dssp             ETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEE
T ss_pred             ECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEE
Confidence            99874211100000    0000              000011112223348899999999998 2349999999999999


Q ss_pred             ee
Q 019059          342 HM  343 (346)
Q Consensus       342 w~  343 (346)
                      |+
T Consensus       436 w~  437 (437)
T 3gre_A          436 FQ  437 (437)
T ss_dssp             EC
T ss_pred             eC
Confidence            95

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=6.5e-37  Score=265.80  Aligned_cols=274  Identities=16%  Similarity=0.261  Sum_probs=213.2

Q ss_pred             CCCCeEEEEEecCCCCe-EEEeeeeccccceEEeeecC-CCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeee
Q 019059           39 KEENEVHLLRLSSGGTE-LICEGLFSHPNEIWDLSSCP-FDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL  116 (346)
Q Consensus        39 ~~~~~i~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~  116 (346)
                      ..++.|.+|++...+.. .....+.+|.+.|.+++|+| ++..|+++    +.|+.|++|++.....  .....+++..+
T Consensus        54 ~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~----s~dg~v~vw~~~~~~~--~~~~~~~~~~~  127 (402)
T 2aq5_A           54 SGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASG----SEDCTVMVWEIPDGGL--VLPLREPVITL  127 (402)
T ss_dssp             SSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEE----ETTSEEEEEECCTTCC--SSCBCSCSEEE
T ss_pred             cCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEE----eCCCeEEEEEccCCCC--ccccCCceEEe
Confidence            46789999998664321 12245678999999999999 66666664    6899999999983110  00011567788


Q ss_pred             eccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEE
Q 019059          117 DAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWD  196 (346)
Q Consensus       117 ~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d  196 (346)
                      .+|...|.+++|+|++..++++++.|+.|++||+.+++....+.   ...|...+.+++|+|++..+++++.|+.|++||
T Consensus       128 ~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  204 (402)
T 2aq5_A          128 EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG---PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIE  204 (402)
T ss_dssp             ECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEEC---TTTCCSCEEEEEECTTSSCEEEEETTSEEEEEE
T ss_pred             cCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEe---cCCCCCceEEEEECCCCCEEEEEecCCcEEEEe
Confidence            89999999999999986668888899999999998764322221   134667999999999999999999999999999


Q ss_pred             ccCCCccceeeccc----eeEEEeCCCCCcEEEEe---cCCCeEEEEEcccCCcceeeec-CCCcceEEEEeCCCCCcEE
Q 019059          197 LRSMGKTNSIEHAH----VRNVDYDTKKKHLLVTA---ADESGIHLWDLRMLKAPIQELP-GHTHWTWAVCCNPEYDGFI  268 (346)
Q Consensus       197 ~~~~~~~~~~~~~~----v~~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~v~~~~~~~~~l  268 (346)
                      +++++.+..+...|    +.+++|+|++. ++++|   +.|+.|++||++....++.... .|...+.+++|+|++ .+|
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l  282 (402)
T 2aq5_A          205 PRKGTVVAEKDRPHEGTRPVHAVFVSEGK-ILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDT-NIV  282 (402)
T ss_dssp             TTTTEEEEEEECSSCSSSCCEEEECSTTE-EEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTT-TEE
T ss_pred             CCCCceeeeeccCCCCCcceEEEEcCCCc-EEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCC-CEE
Confidence            99998887773344    79999999987 88888   7899999999998655444443 577889999999999 666


Q ss_pred             E-EecCCCeEEEEecCCCCCCCCCcccccCCcccccccc-cccccc--ccceeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059          269 L-SAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSL-LNSYSD--YEDSVYGLAWSSREPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       269 ~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~  344 (346)
                      + +++.|+.|++||+..                   +++ +..+..  |...|.+++|+|++. +++  +.++.+++|++
T Consensus       283 ~~~g~~dg~i~i~d~~~-------------------~~~~~~~l~~~~~~~~v~~~~~sp~~~-~~~--s~~~~~~~~~l  340 (402)
T 2aq5_A          283 YLCGKGDSSIRYFEITS-------------------EAPFLHYLSMFSSKESQRGMGYMPKRG-LEV--NKCEIARFYKL  340 (402)
T ss_dssp             EEEETTCSCEEEEEECS-------------------STTCEEEEEEECCSSCCSEEEECCGGG-SCG--GGTEEEEEEEE
T ss_pred             EEEEcCCCeEEEEEecC-------------------CCcceEeecccccCCcccceEEecccc-cce--ecceeEEEEEc
Confidence            5 666899999999997                   442 444443  457899999999986 554  45779999997


Q ss_pred             c
Q 019059          345 E  345 (346)
Q Consensus       345 ~  345 (346)
                      .
T Consensus       341 ~  341 (402)
T 2aq5_A          341 H  341 (402)
T ss_dssp             E
T ss_pred             C
Confidence            5

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1e-35  Score=275.68  Aligned_cols=251  Identities=18%  Similarity=0.257  Sum_probs=204.5

Q ss_pred             EeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEE
Q 019059           58 CEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKL  137 (346)
Q Consensus        58 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  137 (346)
                      ...+.+|.+.|++++|+|++..++++   ++.|++|++|++....    .........+.+|...|.+++|+|+++. ++
T Consensus       375 ~~~l~~H~~~V~~v~~~~~~~~~l~s---~s~D~~i~~W~~~~~~----~~~~~~~~~~~~h~~~v~~v~~s~~g~~-l~  446 (694)
T 3dm0_A          375 KGTMRAHTDMVTAIATPIDNADIIVS---ASRDKSIILWKLTKDD----KAYGVAQRRLTGHSHFVEDVVLSSDGQF-AL  446 (694)
T ss_dssp             EEEEECCSSCEEEEECCTTCCSEEEE---EETTSEEEEEECCCST----TCSCEEEEEEECCSSCEEEEEECTTSSE-EE
T ss_pred             hhhcccCCceeEEEEecCCCCCEEEE---EeCCCcEEEEEccCCC----cccccccceecCCCCcEEEEEECCCCCE-EE
Confidence            35677999999999999987666655   4799999999987311    1123455678899999999999999984 77


Q ss_pred             EEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceee--ccc---ee
Q 019059          138 VSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE--HAH---VR  212 (346)
Q Consensus       138 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~---v~  212 (346)
                      +++.|+.|++||+.++.....+     .+|...|.+++|+|+++.+++++.|++|++||+..........  .+|   |.
T Consensus       447 sgs~Dg~v~vwd~~~~~~~~~~-----~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~  521 (694)
T 3dm0_A          447 SGSWDGELRLWDLAAGVSTRRF-----VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVS  521 (694)
T ss_dssp             EEETTSEEEEEETTTTEEEEEE-----ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEE
T ss_pred             EEeCCCcEEEEECCCCcceeEE-----eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEE
Confidence            7788999999999876433222     3577799999999999999999999999999987543322211  234   99


Q ss_pred             EEEeCCCCC-cEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCC
Q 019059          213 NVDYDTKKK-HLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELP  291 (346)
Q Consensus       213 ~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  291 (346)
                      +++|+|++. ..+++++.|+.|++||++. ......+.+|...|++++|+|++ .+|++++.|+.|++||+++       
T Consensus       522 ~~~~~~~~~~~~l~s~s~d~~v~vwd~~~-~~~~~~~~~h~~~v~~v~~spdg-~~l~sg~~Dg~i~iwd~~~-------  592 (694)
T 3dm0_A          522 CVRFSPNTLQPTIVSASWDKTVKVWNLSN-CKLRSTLAGHTGYVSTVAVSPDG-SLCASGGKDGVVLLWDLAE-------  592 (694)
T ss_dssp             EEEECSCSSSCEEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSBCEEEETTT-------
T ss_pred             EEEEeCCCCcceEEEEeCCCeEEEEECCC-CcEEEEEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCC-------
Confidence            999999872 3799999999999999997 55788899999999999999999 9999999999999999998       


Q ss_pred             cccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          292 SESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                                  ++.+..+..+ ..|.+++|+|++. +++++ .|+.|++||++
T Consensus       593 ------------~~~~~~~~~~-~~v~~~~~sp~~~-~l~~~-~~~~i~iwd~~  631 (694)
T 3dm0_A          593 ------------GKKLYSLEAN-SVIHALCFSPNRY-WLCAA-TEHGIKIWDLE  631 (694)
T ss_dssp             ------------TEEEECCBCS-SCEEEEEECSSSS-EEEEE-ETTEEEEEETT
T ss_pred             ------------CceEEEecCC-CcEEEEEEcCCCc-EEEEE-cCCCEEEEECC
Confidence                        7777776554 4699999999986 55554 57779999985

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.4e-35  Score=279.72  Aligned_cols=287  Identities=16%  Similarity=0.242  Sum_probs=244.0

Q ss_pred             ccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcc
Q 019059           12 LKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESY   91 (346)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~   91 (346)
                      +..+...+..+.++|++..+++|.    .++.|.+|++....   ....+.+|.+.|.+++|+|+++.|+++    +.|+
T Consensus         9 ~~~h~~~v~~i~~sp~~~~la~~~----~~g~v~iwd~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~----~~dg   77 (814)
T 3mkq_A            9 FSNRSDRVKGIDFHPTEPWVLTTL----YSGRVEIWNYETQV---EVRSIQVTETPVRAGKFIARKNWIIVG----SDDF   77 (814)
T ss_dssp             EEEECSCEEEEEECSSSSEEEEEE----TTSEEEEEETTTTE---EEEEEECCSSCEEEEEEEGGGTEEEEE----ETTS
T ss_pred             eecCCCceEEEEECCCCCEEEEEe----CCCEEEEEECCCCc---eEEEEecCCCcEEEEEEeCCCCEEEEE----eCCC
Confidence            344556788888999999999885    57899999886632   345667899999999999999988885    5899


Q ss_pred             eEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceee
Q 019059           92 GAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYL  171 (346)
Q Consensus        92 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v  171 (346)
                      .|++||+.         +++.+..+..|...|.+++|+|+++. +++++.|+.|++||+.++......    ..+|...+
T Consensus        78 ~i~vw~~~---------~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~vw~~~~~~~~~~~----~~~~~~~v  143 (814)
T 3mkq_A           78 RIRVFNYN---------TGEKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNWENNWALEQT----FEGHEHFV  143 (814)
T ss_dssp             EEEEEETT---------TCCEEEEEECCSSCEEEEEECSSSSE-EEEEETTSEEEEEEGGGTSEEEEE----EECCSSCE
T ss_pred             eEEEEECC---------CCcEEEEEecCCCCEEEEEEeCCCCE-EEEEcCCCEEEEEECCCCceEEEE----EcCCCCcE
Confidence            99999998         67888889999999999999999994 677788999999999865322222    23466689


Q ss_pred             EEEEeCC-CCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCC--CCCcEEEEecCCCeEEEEEcccCCcce
Q 019059          172 SGGAWDP-HDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDT--KKKHLLVTAADESGIHLWDLRMLKAPI  245 (346)
Q Consensus       172 ~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~  245 (346)
                      .+++|+| ++..+++++.|+.|++||+++++....+...+   +.+++|+|  ++. .+++++.||.|++||++. ..++
T Consensus       144 ~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~-~~~~  221 (814)
T 3mkq_A          144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP-YMITASDDLTIKIWDYQT-KSCV  221 (814)
T ss_dssp             EEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCC-EEEEECTTSEEEEEETTT-TEEE
T ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCC-EEEEEeCCCEEEEEECCC-CcEE
Confidence            9999999 78899999999999999999888777776443   99999999  887 899999999999999987 5678


Q ss_pred             eeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCC
Q 019059          246 QELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSR  325 (346)
Q Consensus       246 ~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  325 (346)
                      ..+.+|...|.+++|+|++ .+|++++.||.|++||+.+                   ++.+..+..|...+.+++|+|+
T Consensus       222 ~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~v~vwd~~~-------------------~~~~~~~~~~~~~v~~~~~~~~  281 (814)
T 3mkq_A          222 ATLEGHMSNVSFAVFHPTL-PIIISGSEDGTLKIWNSST-------------------YKVEKTLNVGLERSWCIATHPT  281 (814)
T ss_dssp             EEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTT-------------------CSEEEEECCSSSSEEEEEECTT
T ss_pred             EEEcCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEECCC-------------------CcEEEEeecCCCcEEEEEEccC
Confidence            8889999999999999999 8999999999999999998                   7888888889899999999999


Q ss_pred             CCcEEEEeecCCeEEEeeec
Q 019059          326 EPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       326 ~~~~l~s~~~d~~v~vw~~~  345 (346)
                      +..++++++.|+.+.+|++.
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~  301 (814)
T 3mkq_A          282 GRKNYIASGFDNGFTVLSLG  301 (814)
T ss_dssp             CGGGEEEEEETTEEEEEECS
T ss_pred             CCceEEEEEeCCCEEEEEcC
Confidence            87555566667888888864

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=3.7e-35  Score=249.07  Aligned_cols=273  Identities=12%  Similarity=0.096  Sum_probs=226.3

Q ss_pred             ceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCC-ceEEEEeecCCcce
Q 019059           14 YQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQ-RIFSTVFSTGESYG   92 (346)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~~~~~d~~   92 (346)
                      .+...+.++.+++++..++++.    .++.+.+|++...........+.+|...|.+++|+|+++ .++++    +.|+.
T Consensus         9 ~h~~~v~~~~~s~~~~~l~~~~----~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~----~~dg~   80 (342)
T 1yfq_A            9 APKDYISDIKIIPSKSLLLITS----WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVG----TVQGE   80 (342)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEE----TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEE----ETTSC
T ss_pred             CCCCcEEEEEEcCCCCEEEEEc----CCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEE----cCCCe
Confidence            3455677788888888888874    578999999998775555667779999999999999988 77775    68999


Q ss_pred             EEEEec-CcccCCCCCccceeeeeeec--cCCceEEEEeecCCCCcEEEEecCCeEEEEEcCC---------CCCCceee
Q 019059           93 AAIWQI-PELYGQLNSPQLERIAALDA--HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDC---------SNKNAQVQ  160 (346)
Q Consensus        93 i~vw~~-~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~---------~~~~~~~~  160 (346)
                      |++|++ .         .. ....+..  |...|.+++|+| +. .+++++.|+.|++||+.+         .+....+ 
T Consensus        81 i~~wd~~~---------~~-~~~~~~~~~~~~~v~~l~~~~-~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-  147 (342)
T 1yfq_A           81 ILKVDLIG---------SP-SFQALTNNEANLGICRICKYG-DD-KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT-  147 (342)
T ss_dssp             EEEECSSS---------SS-SEEECBSCCCCSCEEEEEEET-TT-EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS-
T ss_pred             EEEEEecc---------CC-ceEeccccCCCCceEEEEeCC-CC-EEEEEcCCCeEEEEcccccccccccccCCeeeEE-
Confidence            999999 6         22 2356777  999999999999 66 477788899999999985         3322221 


Q ss_pred             ecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccC-CCcc-ceeeccc---eeEEEeCC-CCCcEEEEecCCCeEE
Q 019059          161 SKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRS-MGKT-NSIEHAH---VRNVDYDT-KKKHLLVTAADESGIH  234 (346)
Q Consensus       161 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~-~~~~~~~---v~~~~~~~-~~~~~l~~~~~dg~i~  234 (346)
                           .+...+.+++|+|++  +++++.|+.|++||+++ +... ......+   +.+++|+| ++. ++++++.||.|+
T Consensus       148 -----~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-~l~~~~~dg~i~  219 (342)
T 1yfq_A          148 -----KVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQE-GYACSSIDGRVA  219 (342)
T ss_dssp             -----SSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGC-EEEEEETTSEEE
T ss_pred             -----eeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCC-EEEEEecCCcEE
Confidence                 155689999999877  99999999999999998 5543 2222233   99999999 998 899999999999


Q ss_pred             EEEcccC-----CcceeeecCCCc---------ceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcc
Q 019059          235 LWDLRML-----KAPIQELPGHTH---------WTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPN  300 (346)
Q Consensus       235 i~d~~~~-----~~~~~~~~~~~~---------~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  300 (346)
                      +||++..     ..+...+..|..         .|.+++|+|++ .+|++++.||.|++||+++                
T Consensus       220 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~vwd~~~----------------  282 (342)
T 1yfq_A          220 VEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIISCWNLQT----------------  282 (342)
T ss_dssp             EEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT-CCEEEEETTSCEEEEETTT----------------
T ss_pred             EEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCC-CEEEEecCCceEEEEcCcc----------------
Confidence            9999875     267778888765         99999999999 9999999999999999998                


Q ss_pred             ccccccccccccc-cceeeEEEeCCCCCcEEEEeecCCe
Q 019059          301 QRANSLLNSYSDY-EDSVYGLAWSSREPWIFASLSYDGR  338 (346)
Q Consensus       301 ~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~d~~  338 (346)
                         ++++..+.+| ...|++++  |++. +|++++.|+.
T Consensus       283 ---~~~~~~~~~~h~~~v~~~~--~~~~-~l~s~s~Dg~  315 (342)
T 1yfq_A          283 ---RKKIKNFAKFNEDSVVKIA--CSDN-ILCLATSDDT  315 (342)
T ss_dssp             ---TEEEEECCCCSSSEEEEEE--ECSS-EEEEEEECTH
T ss_pred             ---HhHhhhhhcccCCCceEec--CCCC-eEEEEecCCc
Confidence               7888889998 99999999  8887 8999999998

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2.1e-35  Score=251.94  Aligned_cols=251  Identities=12%  Similarity=0.180  Sum_probs=200.8

Q ss_pred             eEEEeeeeccccceEEeeecCCCCceEEEEeecCC---cceEEEEecCcccCCCCCccceeeee-eeccCCceEEEEeec
Q 019059           55 ELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGE---SYGAAIWQIPELYGQLNSPQLERIAA-LDAHVGKINCVLWWS  130 (346)
Q Consensus        55 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~---d~~i~vw~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~  130 (346)
                      .+......+|.+.|.+++|+|++..+++++   +.   |+.|++|++.         ..+.... ...|...|.+++|+|
T Consensus         8 ~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~---s~~~~d~~v~iw~~~---------~~~~~~~~~~~~~~~v~~~~~~~   75 (357)
T 3i2n_A            8 QIIAHIQKGFNYTVFDCKWVPCSAKFVTMG---NFARGTGVIQLYEIQ---------HGDLKLLREIEKAKPIKCGTFGA   75 (357)
T ss_dssp             CEEEEEEEECSSCEEEEEECTTSSEEEEEE---C--CCCEEEEEEEEC---------SSSEEEEEEEEESSCEEEEECTT
T ss_pred             HHhhhhccCCCCceEEEEEcCCCceEEEec---CccCCCcEEEEEeCC---------CCcccceeeecccCcEEEEEEcC
Confidence            344455677999999999999998888763   54   8999999998         3333222 237899999999999


Q ss_pred             C---CCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEE------EeCCCCCcEEEEecCCeEEEEEccCCC
Q 019059          131 S---GRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGG------AWDPHDVNAVAATCESSVQFWDLRSMG  201 (346)
Q Consensus       131 ~---~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~------~~~~~~~~l~~~~~d~~i~i~d~~~~~  201 (346)
                      +   +. ++++++.|+.|++||+.+++......    .+|...+.++      +|+|+++.+++++.|+.|++||+++++
T Consensus        76 ~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~  150 (357)
T 3i2n_A           76 TSLQQR-YLATGDFGGNLHIWNLEAPEMPVYSV----KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKD  150 (357)
T ss_dssp             CCTTTC-CEEEEETTSCEEEECTTSCSSCSEEE----CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCS
T ss_pred             CCCCCc-eEEEecCCCeEEEEeCCCCCccEEEE----EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCC
Confidence            9   45 47788889999999999766222222    3466688888      457899999999999999999999887


Q ss_pred             -ccceeec--c----ceeEEE----eCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCC---CCCcE
Q 019059          202 -KTNSIEH--A----HVRNVD----YDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNP---EYDGF  267 (346)
Q Consensus       202 -~~~~~~~--~----~v~~~~----~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~---~~~~~  267 (346)
                       ....+..  +    .+.+++    |+|++. ++++++.|+.|++||++. ... .....|...|.+++|+|   ++ .+
T Consensus       151 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~-~~~-~~~~~~~~~v~~~~~~~~~~~~-~~  226 (357)
T 3i2n_A          151 DPVANMEPVQGENKRDCWTVAFGNAYNQEER-VVCAGYDNGDIKLFDLRN-MAL-RWETNIKNGVCSLEFDRKDISM-NK  226 (357)
T ss_dssp             SCSEEECCCTTSCCCCEEEEEEECCCC-CCC-EEEEEETTSEEEEEETTT-TEE-EEEEECSSCEEEEEESCSSSSC-CE
T ss_pred             CcceeccccCCCCCCceEEEEEEeccCCCCC-EEEEEccCCeEEEEECcc-Cce-eeecCCCCceEEEEcCCCCCCC-CE
Confidence             5555531  2    177887    789998 899999999999999997 333 34456889999999999   88 99


Q ss_pred             EEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccc-----cccceeeEEEeCCCCCcEEEEeecCCeEEEe
Q 019059          268 ILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYS-----DYEDSVYGLAWSSREPWIFASLSYDGRVRNH  342 (346)
Q Consensus       268 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw  342 (346)
                      |++++.|+.|++||++.                   .++...+.     +|...|++++|+|+++.+|++++.|+.|++|
T Consensus       227 l~~~~~dg~i~i~d~~~-------------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw  287 (357)
T 3i2n_A          227 LVATSLEGKFHVFDMRT-------------------QHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLW  287 (357)
T ss_dssp             EEEEESTTEEEEEEEEE-------------------EETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEE
T ss_pred             EEEECCCCeEEEEeCcC-------------------CCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEe
Confidence            99999999999999997                   55555554     8999999999999986589999999999999


Q ss_pred             eec
Q 019059          343 MLE  345 (346)
Q Consensus       343 ~~~  345 (346)
                      +++
T Consensus       288 d~~  290 (357)
T 3i2n_A          288 KYE  290 (357)
T ss_dssp             EEE
T ss_pred             ecC
Confidence            985

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.4e-35  Score=250.32  Aligned_cols=250  Identities=15%  Similarity=0.162  Sum_probs=213.0

Q ss_pred             CCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCC
Q 019059           53 GTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSG  132 (346)
Q Consensus        53 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  132 (346)
                      +.......+.+|.+.|++++|+|+++.|+++    +.|+.|++||+.         ..+.+..+..|...|.+++|+|++
T Consensus        20 G~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~----~~dg~i~vwd~~---------~~~~~~~~~~h~~~v~~~~~~~~~   86 (369)
T 3zwl_B           20 GSHMKAIKLTGHERPLTQVKYNKEGDLLFSC----SKDSSASVWYSL---------NGERLGTLDGHTGTIWSIDVDCFT   86 (369)
T ss_dssp             CCSEEEEEEECCSSCEEEEEECTTSCEEEEE----ESSSCEEEEETT---------TCCEEEEECCCSSCEEEEEECTTS
T ss_pred             ccccccEEEEEeeceEEEEEEcCCCCEEEEE----eCCCEEEEEeCC---------CchhhhhhhhcCCcEEEEEEcCCC
Confidence            4455667788999999999999999988885    689999999998         678888999999999999999998


Q ss_pred             CCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecC-----CeEEEEEccCCCcccee-
Q 019059          133 RHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE-----SSVQFWDLRSMGKTNSI-  206 (346)
Q Consensus       133 ~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~-  206 (346)
                      +. +++++.|+.|++||+.+++......      +...+.+++|+|+++.+++++.+     +.|++||++.......+ 
T Consensus        87 ~~-l~s~~~dg~i~iwd~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~  159 (369)
T 3zwl_B           87 KY-CVTGSADYSIKLWDVSNGQCVATWK------SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELT  159 (369)
T ss_dssp             SE-EEEEETTTEEEEEETTTCCEEEEEE------CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEE
T ss_pred             CE-EEEEeCCCeEEEEECCCCcEEEEee------cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeec
Confidence            84 7777889999999998776443333      34489999999999999999988     99999999877533221 


Q ss_pred             ----------ec--c--ceeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEec
Q 019059          207 ----------EH--A--HVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG  272 (346)
Q Consensus       207 ----------~~--~--~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~  272 (346)
                                ..  .  .+.+++|+|++. .+++++.||.|++||++....++..+..|...|.+++|+|++ .+|++++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~  237 (369)
T 3zwl_B          160 KVSEEPIHKIITHEGLDAATVAGWSTKGK-YIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDL-TYFITSS  237 (369)
T ss_dssp             EECSSCSEEEECCTTCCCEEEEEECGGGC-EEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTS-SEEEEEE
T ss_pred             ccccceeeeccCCcCccceeEEEEcCCCC-EEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCC-CEEEEec
Confidence                      10  1  289999999998 899999999999999997556788889999999999999999 9999999


Q ss_pred             CCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCC--------------e
Q 019059          273 TDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDG--------------R  338 (346)
Q Consensus       273 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~--------------~  338 (346)
                      .|+.|++||+++                   ++.+..+. +...+.+++|+|+++ ++++++.++              .
T Consensus       238 ~d~~i~v~d~~~-------------------~~~~~~~~-~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~  296 (369)
T 3zwl_B          238 RDTNSFLVDVST-------------------LQVLKKYE-TDCPLNTAVITPLKE-FIILGGGQEAKDVTTTSANEGKFE  296 (369)
T ss_dssp             TTSEEEEEETTT-------------------CCEEEEEE-CSSCEEEEEECSSSS-EEEEEECCC-------------CE
T ss_pred             CCceEEEEECCC-------------------Cceeeeec-CCCCceeEEecCCCc-eEEEeecCCCceEEEEecCCCcce
Confidence            999999999998                   67776665 667799999999997 888888888              8


Q ss_pred             EEEeeec
Q 019059          339 VRNHMLE  345 (346)
Q Consensus       339 v~vw~~~  345 (346)
                      +++|++.
T Consensus       297 i~~~d~~  303 (369)
T 3zwl_B          297 ARFYHKI  303 (369)
T ss_dssp             EEEEETT
T ss_pred             eEEEecC
Confidence            9999874

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=6.7e-35  Score=256.52  Aligned_cols=313  Identities=17%  Similarity=0.308  Sum_probs=220.1

Q ss_pred             eeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCC--------CeEEEeeeeccc------------cceEEeeecC
Q 019059           16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGG--------TELICEGLFSHP------------NEIWDLSSCP   75 (346)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~h~------------~~v~~~~~~~   75 (346)
                      ...|..+.+++++..+++|.    .++.|.+|++....        .......+.+|.            +.|.+++|+|
T Consensus        28 ~~~V~~v~~s~~g~~la~g~----~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~  103 (447)
T 3dw8_B           28 ADIISTVEFNHSGELLATGD----KGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP  103 (447)
T ss_dssp             GGSEEEEEECSSSSEEEEEE----TTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC
T ss_pred             cCcEEEEEECCCCCEEEEEc----CCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC
Confidence            46788888999999998875    57899999998643        122346677898            8899999999


Q ss_pred             CC--CceEEEEeecCCcceEEEEecCcccCC-----CCC----------------c---------cceeeee-eeccCCc
Q 019059           76 FD--QRIFSTVFSTGESYGAAIWQIPELYGQ-----LNS----------------P---------QLERIAA-LDAHVGK  122 (346)
Q Consensus        76 ~~--~~l~~~~~~~~~d~~i~vw~~~~~~~~-----~~~----------------~---------~~~~~~~-~~~~~~~  122 (346)
                      ++  ..++++    +.|+.|++|++......     ...                +         ...+... ..+|...
T Consensus       104 ~~~~~~l~s~----s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  179 (447)
T 3dw8_B          104 QKNAAQFLLS----TNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYH  179 (447)
T ss_dssp             CCSSSEEEEE----ECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSC
T ss_pred             CCCcceEEEe----CCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcc
Confidence            97  566664    68999999998731100     000                0         0011112 3579999


Q ss_pred             eEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceee---ecccCCCceeeEEEEeCCCC-CcEEEEecCCeEEEEEcc
Q 019059          123 INCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQ---SKQSSGMLHYLSGGAWDPHD-VNAVAATCESSVQFWDLR  198 (346)
Q Consensus       123 i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~  198 (346)
                      |.+++|+|+++. ++++ .|+.|++||+.+........   .....+|...|.+++|+|++ ..+++++.|+.|++||++
T Consensus       180 v~~~~~~~~~~~-l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~  257 (447)
T 3dw8_B          180 INSISINSDYET-YLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMR  257 (447)
T ss_dssp             CCEEEECTTSSE-EEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred             eEEEEEcCCCCE-EEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECc
Confidence            999999999983 5555 79999999998433222211   11234577789999999998 889999999999999999


Q ss_pred             CCCc----cceeecc--------------ceeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcc------
Q 019059          199 SMGK----TNSIEHA--------------HVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHW------  254 (346)
Q Consensus       199 ~~~~----~~~~~~~--------------~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~------  254 (346)
                      +++.    ...+...              .|.+++|+|++. +|++++. +.|++||++....++..+..|...      
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~  335 (447)
T 3dw8_B          258 ASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGR-YMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCS  335 (447)
T ss_dssp             TCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSS-EEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHH
T ss_pred             CCccccceeeEeccCCCccccccccccCceEEEEEECCCCC-EEEEeeC-CeEEEEeCCCCccccceeeccccccccccc
Confidence            8875    4444321              389999999998 8888888 999999999756688888888642      


Q ss_pred             ---------eEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCccc------ccCCc-------ccccccccccccc
Q 019059          255 ---------TWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSES------LVESP-------NQRANSLLNSYSD  312 (346)
Q Consensus       255 ---------v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~------~~~~~-------~~~~~~~~~~~~~  312 (346)
                               +..++|+|++ .+|++++.|+.|++||+.+..........      ....+       .+...........
T Consensus       336 ~~~~~~i~~~~~~~~s~~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (447)
T 3dw8_B          336 LYENDCIFDKFECCWNGSD-SVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLD  414 (447)
T ss_dssp             HHHTSGGGCCCCEEECTTS-SEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCC
T ss_pred             cccccccccceEEEECCCC-CEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccc
Confidence                     2348999999 99999999999999999874321000000      00000       0000011111123


Q ss_pred             ccceeeEEEeCCCCCcEEEEeecCCeEEEee
Q 019059          313 YEDSVYGLAWSSREPWIFASLSYDGRVRNHM  343 (346)
Q Consensus       313 ~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~  343 (346)
                      +...|..++|+|++. +||+++.++ +++|.
T Consensus       415 ~~~~i~~~~~~p~~~-~la~~~~~~-~~~~~  443 (447)
T 3dw8_B          415 FNKKILHTAWHPKEN-IIAVATTNN-LYIFQ  443 (447)
T ss_dssp             TTSCCCEEEECSSSS-EEEEECSSC-EEEEE
T ss_pred             cCCceeEEEECCCCC-EEEEEecce-eeeec
Confidence            456799999999997 888887665 77775

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=5.5e-35  Score=252.08  Aligned_cols=247  Identities=11%  Similarity=0.085  Sum_probs=192.9

Q ss_pred             EEeeeeccccceEEeeecCCC-CceEEEEeecCCcceEEEEecCcccCCCCCccceeeeee--eccCCceEEEEeecCCC
Q 019059           57 ICEGLFSHPNEIWDLSSCPFD-QRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL--DAHVGKINCVLWWSSGR  133 (346)
Q Consensus        57 ~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~  133 (346)
                      ....+.+|.+.|.+++|+|++ +.|+++    +.|+.|++||+.         ..+....+  .+|...|.+++|+|++.
T Consensus        65 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~----~~dg~i~iwd~~---------~~~~~~~~~~~~h~~~v~~~~~~~~~~  131 (383)
T 3ei3_B           65 LHRTASPFDRRVTSLEWHPTHPTTVAVG----SKGGDIILWDYD---------VQNKTSFIQGMGPGDAITGMKFNQFNT  131 (383)
T ss_dssp             EEEEECCCSSCEEEEEECSSCTTEEEEE----EBTSCEEEEETT---------STTCEEEECCCSTTCBEEEEEEETTEE
T ss_pred             eEEeccCCCCCEEEEEECCCCCCEEEEE----cCCCeEEEEeCC---------CcccceeeecCCcCCceeEEEeCCCCC
Confidence            446778999999999999998 556554    689999999998         33343444  46999999999999443


Q ss_pred             CcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---
Q 019059          134 HDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---  210 (346)
Q Consensus       134 ~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---  210 (346)
                      ..+++++.|+.|++||+.+ .....+  .....+...+.+++|+|+++.+++++.|+.|++||++ ++.+..+. .|   
T Consensus       132 ~~l~s~~~d~~i~iwd~~~-~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~-~h~~~  206 (383)
T 3ei3_B          132 NQLFVSSIRGATTLRDFSG-SVIQVF--AKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKEK-LHKAK  206 (383)
T ss_dssp             EEEEEEETTTEEEEEETTS-CEEEEE--ECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEEE-CSSSC
T ss_pred             CEEEEEeCCCEEEEEECCC-CceEEE--eccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEec-cCCCc
Confidence            3577778899999999984 222222  2223455689999999999999999999999999994 66666665 44   


Q ss_pred             eeEEEeCCCCCcEEEEecCCCeEEEEEcccCC---cceeeecCCCcceEEEEeCC-CCCcEEEEecCCCeEEEEecCCCC
Q 019059          211 VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK---APIQELPGHTHWTWAVCCNP-EYDGFILSAGTDSTVNLWLVSTSN  286 (346)
Q Consensus       211 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~v~~v~~~~-~~~~~l~s~~~d~~i~iwd~~~~~  286 (346)
                      |.+++|+|++++++++++.|+.|++||+++..   .++..+ +|...|.+++|+| ++ .+|++++.|+.|++||+++  
T Consensus       207 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~-~~l~~~~~d~~i~iwd~~~--  282 (383)
T 3ei3_B          207 VTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDS-TKLLTTDQRNEIRVYSSYD--  282 (383)
T ss_dssp             EEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTS-CEEEEEESSSEEEEEETTB--
T ss_pred             EEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCC-CEEEEEcCCCcEEEEECCC--
Confidence            99999999998789999999999999999732   234444 6999999999999 98 9999999999999999997  


Q ss_pred             CCCCCcccccCCccccccccccccccc-----------------cceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          287 HDELPSESLVESPNQRANSLLNSYSDY-----------------EDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                                       ++....+.+|                 ...+..++|+|+++ +  +++.|+.|++||+.
T Consensus       283 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~-~--s~s~d~~i~iwd~~  338 (383)
T 3ei3_B          283 -----------------WSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQ-L--LLNDKRTIDIYDAN  338 (383)
T ss_dssp             -----------------TTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTT-T--CTTCCCCEEEEETT
T ss_pred             -----------------CccccccccccccccccccceEEeccCCCCceEEEecCCcc-c--ccCCCCeEEEEecC
Confidence                             3333333222                 12345577777776 3  78899999999975

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=3e-35  Score=277.41  Aligned_cols=245  Identities=15%  Similarity=0.235  Sum_probs=211.9

Q ss_pred             EeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEE
Q 019059           58 CEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKL  137 (346)
Q Consensus        58 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  137 (346)
                      ...+.+|.+.|.+++|+|+++.++++    +.|+.|++||+.         .++.+..+..|...|.+++|+|+++. ++
T Consensus         6 ~~~~~~h~~~v~~i~~sp~~~~la~~----~~~g~v~iwd~~---------~~~~~~~~~~~~~~v~~~~~s~~~~~-l~   71 (814)
T 3mkq_A            6 KKTFSNRSDRVKGIDFHPTEPWVLTT----LYSGRVEIWNYE---------TQVEVRSIQVTETPVRAGKFIARKNW-II   71 (814)
T ss_dssp             EEEEEEECSCEEEEEECSSSSEEEEE----ETTSEEEEEETT---------TTEEEEEEECCSSCEEEEEEEGGGTE-EE
T ss_pred             ceeeecCCCceEEEEECCCCCEEEEE----eCCCEEEEEECC---------CCceEEEEecCCCcEEEEEEeCCCCE-EE
Confidence            35677899999999999999988886    588999999998         67888899999999999999999984 77


Q ss_pred             EEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCc-cceeeccc---eeE
Q 019059          138 VSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGK-TNSIEHAH---VRN  213 (346)
Q Consensus       138 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~---v~~  213 (346)
                      +++.|+.|++||+.+++....+     .+|...+.+++|+|+++.+++++.|+.|++||++++.. ...+. +|   +.+
T Consensus        72 ~~~~dg~i~vw~~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-~~~~~v~~  145 (814)
T 3mkq_A           72 VGSDDFRIRVFNYNTGEKVVDF-----EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE-GHEHFVMC  145 (814)
T ss_dssp             EEETTSEEEEEETTTCCEEEEE-----ECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEE-CCSSCEEE
T ss_pred             EEeCCCeEEEEECCCCcEEEEE-----ecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEc-CCCCcEEE
Confidence            7788999999999877643333     24666899999999999999999999999999998744 33443 44   999


Q ss_pred             EEeCC-CCCcEEEEecCCCeEEEEEcccCCcceeeecC-CCcceEEEEeCC--CCCcEEEEecCCCeEEEEecCCCCCCC
Q 019059          214 VDYDT-KKKHLLVTAADESGIHLWDLRMLKAPIQELPG-HTHWTWAVCCNP--EYDGFILSAGTDSTVNLWLVSTSNHDE  289 (346)
Q Consensus       214 ~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~v~~~~--~~~~~l~s~~~d~~i~iwd~~~~~~~~  289 (346)
                      ++|+| ++. .+++++.||.|++||++... +...+.. +...+.+++|+|  ++ .+|++++.|+.|++||+++     
T Consensus       146 ~~~~p~~~~-~l~~~~~dg~v~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~~~d~~~-----  217 (814)
T 3mkq_A          146 VAFNPKDPS-TFASGCLDRTVKVWSLGQST-PNFTLTTGQERGVNYVDYYPLPDK-PYMITASDDLTIKIWDYQT-----  217 (814)
T ss_dssp             EEEETTEEE-EEEEEETTSEEEEEETTCSS-CSEEEECCCTTCCCEEEECCSTTC-CEEEEECTTSEEEEEETTT-----
T ss_pred             EEEEcCCCC-EEEEEeCCCeEEEEECCCCc-ceeEEecCCCCCEEEEEEEECCCC-CEEEEEeCCCEEEEEECCC-----
Confidence            99999 665 89999999999999998744 4555554 448999999999  88 8999999999999999998     


Q ss_pred             CCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          290 LPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                                    ++++..+.+|...|.+++|+|+++ +|++++.||.|++|++.
T Consensus       218 --------------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~v~vwd~~  258 (814)
T 3mkq_A          218 --------------KSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSS  258 (814)
T ss_dssp             --------------TEEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETT
T ss_pred             --------------CcEEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEECC
Confidence                          788888889999999999999997 89999999999999975

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.3e-35  Score=261.15  Aligned_cols=257  Identities=13%  Similarity=0.194  Sum_probs=197.0

Q ss_pred             ccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccC--CCCCccceeeeeeeccC------------CceEEEEe
Q 019059           63 SHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYG--QLNSPQLERIAALDAHV------------GKINCVLW  128 (346)
Q Consensus        63 ~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~--~~~~~~~~~~~~~~~~~------------~~i~~~~~  128 (346)
                      .|.+.|.+++|+|++++|+++    +.|+.|+||++.....  .......+....+.+|.            ..|.+++|
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g----~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~  101 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATG----DKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRW  101 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEE----ETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEE
T ss_pred             cccCcEEEEEECCCCCEEEEE----cCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEE
Confidence            478999999999999988885    6899999999983211  00112234677888998            88999999


Q ss_pred             ecCCC-CcEEEEecCCeEEEEEcCCCCCCce-----------------------------------eeecccCCCceeeE
Q 019059          129 WSSGR-HDKLVSIDEENIFLWSLDCSNKNAQ-----------------------------------VQSKQSSGMLHYLS  172 (346)
Q Consensus       129 ~~~~~-~~~~~~~~d~~i~vwd~~~~~~~~~-----------------------------------~~~~~~~~~~~~v~  172 (346)
                      +|++. ..+++++.|+.|++||+.+......                                   .......+|...|.
T Consensus       102 ~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  181 (447)
T 3dw8_B          102 LPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHIN  181 (447)
T ss_dssp             CCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCC
T ss_pred             cCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceE
Confidence            99983 2477778899999999875321100                                   00011246788999


Q ss_pred             EEEeCCCCCcEEEEecCCeEEEEEccCC-Ccccee------eccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCC
Q 019059          173 GGAWDPHDVNAVAATCESSVQFWDLRSM-GKTNSI------EHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK  242 (346)
Q Consensus       173 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~------~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  242 (346)
                      +++|+|+++.++++ .|+.|++||+++. +....+      ..+|   |.+++|+|++..+|++++.||.|++||+++..
T Consensus       182 ~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~  260 (447)
T 3dw8_B          182 SISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASA  260 (447)
T ss_dssp             EEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCS
T ss_pred             EEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCc
Confidence            99999999999988 8999999999943 333321      1233   99999999983399999999999999999743


Q ss_pred             c---ceeeecCCCc------------ceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccc
Q 019059          243 A---PIQELPGHTH------------WTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLL  307 (346)
Q Consensus       243 ~---~~~~~~~~~~------------~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (346)
                      .   .+..+..|..            .|.+++|+|++ .+|++++. +.|++||++.                  .++++
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~-~~v~iwd~~~------------------~~~~~  320 (447)
T 3dw8_B          261 LCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSG-RYMMTRDY-LSVKVWDLNM------------------ENRPV  320 (447)
T ss_dssp             SSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTS-SEEEEEES-SEEEEEETTC------------------CSSCS
T ss_pred             cccceeeEeccCCCccccccccccCceEEEEEECCCC-CEEEEeeC-CeEEEEeCCC------------------Ccccc
Confidence            2   1677888876            89999999999 99999998 9999999985                  25666


Q ss_pred             cccccccce---------------eeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          308 NSYSDYEDS---------------VYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       308 ~~~~~~~~~---------------v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      ..+.+|...               +..++|+|+++ +|++++.|+.|++||++
T Consensus       321 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~-~l~s~s~dg~v~iwd~~  372 (447)
T 3dw8_B          321 ETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDS-VVMTGSYNNFFRMFDRN  372 (447)
T ss_dssp             CCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSS-EEEEECSTTEEEEEETT
T ss_pred             ceeeccccccccccccccccccccceEEEECCCCC-EEEEeccCCEEEEEEcC
Confidence            667666532               23499999997 88999999999999985

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-35  Score=275.85  Aligned_cols=255  Identities=18%  Similarity=0.287  Sum_probs=205.2

Q ss_pred             eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecC--CCCcE
Q 019059           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSS--GRHDK  136 (346)
Q Consensus        59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~  136 (346)
                      ..+.+|.+.|++++|+|+++.++++    +.|+.|++|++.       ....+.+..+.+|.+.|.+++|+|+  ++ .+
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg----~~dg~I~vwd~~-------~~~~~~~~~l~~h~~~V~~l~~s~~~~~~-~l   70 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATC----SSDKTIKIFEVE-------GETHKLIDTLTGHEGPVWRVDWAHPKFGT-IL   70 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEE----ETTTEEEEEEEE-------TTEEEEEEEECCCSSCEEEEEECCTTSCS-EE
T ss_pred             eecccCcceeEEEEECCCCCeEEEE----ECCCcEEEEecC-------CCCCccceeccCCcCceEEEEecCCCCCC-EE
Confidence            3466899999999999999988885    689999999987       2345777888999999999999988  66 47


Q ss_pred             EEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCC--CCcEEEEecCCeEEEEEccCCCccceee-ccc---
Q 019059          137 LVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPH--DVNAVAATCESSVQFWDLRSMGKTNSIE-HAH---  210 (346)
Q Consensus       137 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~---  210 (346)
                      ++++.||.|++||+.++...   ......+|...|.+++|+|+  +..+++++.||.|++||++++....... .+|   
T Consensus        71 ~s~s~Dg~I~vwd~~~~~~~---~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~  147 (753)
T 3jro_A           71 ASCSYDGKVLIWKEENGRWS---QIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG  147 (753)
T ss_dssp             EEEETTSCEEEEEEETTEEE---EEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSC
T ss_pred             EEEeCCCeEEEEECCCCccc---ccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCc
Confidence            77788999999999875311   11223456779999999999  8999999999999999999874332221 233   


Q ss_pred             eeEEEeCCC-------------CCcEEEEecCCCeEEEEEcccCC---cceeeecCCCcceEEEEeCCC---CCcEEEEe
Q 019059          211 VRNVDYDTK-------------KKHLLVTAADESGIHLWDLRMLK---APIQELPGHTHWTWAVCCNPE---YDGFILSA  271 (346)
Q Consensus       211 v~~~~~~~~-------------~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~v~~v~~~~~---~~~~l~s~  271 (346)
                      |.+++|+|.             +. .+++|+.||.|++||++...   .+...+.+|...|++++|+|+   + .+|+++
T Consensus       148 v~~l~~~p~~~~~~~~~~~~~d~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~-~~l~s~  225 (753)
T 3jro_A          148 VNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR-SYLASV  225 (753)
T ss_dssp             EEEEEECCCC---------CGGGC-CEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS-EEEEEE
T ss_pred             eEEEEecCcccccccccccCCCCC-EEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCC-CEEEEE
Confidence            999999994             66 89999999999999998743   355677899999999999999   7 999999


Q ss_pred             cCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          272 GTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       272 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      +.||.|++||++......              .........|...|++++|+|+++ +|++++.||.|++|+++
T Consensus       226 s~Dg~I~iwd~~~~~~~~--------------~~~~~~~~~~~~~v~~l~~spdg~-~l~s~s~Dg~I~vwd~~  284 (753)
T 3jro_A          226 SQDRTCIIWTQDNEQGPW--------------KKTLLKEEKFPDVLWRASWSLSGN-VLALSGGDNKVTLWKEN  284 (753)
T ss_dssp             ESSSCEEEEEESSSSSCC--------------BCCBSSSSCCSSCCCCEEECTTTC-CEEEECSSSCEECCBCC
T ss_pred             ecCCEEEEecCCCCCCcc--------------eeEEeccCCCCCceEEEEEcCCCC-EEEEEcCCCEEEEEecC
Confidence            999999999998721100              123444556888999999999997 89999999999999985

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2e-34  Score=239.76  Aligned_cols=251  Identities=16%  Similarity=0.301  Sum_probs=196.3

Q ss_pred             ccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCC--CCceEEEEeecCC
Q 019059           12 LKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPF--DQRIFSTVFSTGE   89 (346)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~~~~~~~   89 (346)
                      +..+...|.++.+++++.+++.|.    .++.+++|++...... ....+.+|.++|++++|+|+  +..|+++    +.
T Consensus         5 ~~~h~~~V~~~~~s~~g~~las~s----~D~~v~iw~~~~~~~~-~~~~l~gH~~~V~~v~~s~~~~g~~l~s~----s~   75 (297)
T 2pm7_B            5 ANAHNEMIHDAVMDYYGKRMATCS----SDKTIKIFEVEGETHK-LIDTLTGHEGPVWRVDWAHPKFGTILASC----SY   75 (297)
T ss_dssp             CCSCSSCEEEEEECTTSSEEEEEE----TTSCEEEEEBCSSCBC-CCEEECCCSSCEEEEEECCGGGCSEEEEE----ET
T ss_pred             ccCCcCceEEEEECCCCCEEEEEe----CCCEEEEEecCCCCcE-EEEEEccccCCeEEEEecCCCcCCEEEEE----cC
Confidence            444566788888999999998874    6789999999754322 23567899999999999864  6666664    79


Q ss_pred             cceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecC--CCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCC
Q 019059           90 SYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSS--GRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGM  167 (346)
Q Consensus        90 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~  167 (346)
                      |++|++||++.       .....+..+..|...|.+++|+|+  +. ++++++.|+.|++||+++........   ..+|
T Consensus        76 D~~v~iWd~~~-------~~~~~~~~~~~h~~~v~~v~~~p~~~g~-~l~s~s~d~~v~~wd~~~~~~~~~~~---~~~h  144 (297)
T 2pm7_B           76 DGKVMIWKEEN-------GRWSQIAVHAVHSASVNSVQWAPHEYGP-MLLVASSDGKVSVVEFKENGTTSPII---IDAH  144 (297)
T ss_dssp             TTEEEEEEBSS-------SCBCCCEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEEBCSSSCBCCEE---EECC
T ss_pred             CCEEEEEEcCC-------CceEEEEEeecCCCceeEEEeCcCCCCc-EEEEEECCCcEEEEEecCCCceeeee---eecc
Confidence            99999999972       122455667789999999999998  55 47777899999999998653222111   2346


Q ss_pred             ceeeEEEEeCCC-------------CCcEEEEecCCeEEEEEccCCCc----cceeeccc---eeEEEeCCCC--CcEEE
Q 019059          168 LHYLSGGAWDPH-------------DVNAVAATCESSVQFWDLRSMGK----TNSIEHAH---VRNVDYDTKK--KHLLV  225 (346)
Q Consensus       168 ~~~v~~~~~~~~-------------~~~l~~~~~d~~i~i~d~~~~~~----~~~~~~~~---v~~~~~~~~~--~~~l~  225 (346)
                      ...+.+++|+|+             ++.|++++.|+.|++||+++++.    ...+. +|   |.+++|+|++  ..+|+
T Consensus       145 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~-~H~~~V~~v~~sp~~~~~~~la  223 (297)
T 2pm7_B          145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWSPTVLLRSYMA  223 (297)
T ss_dssp             SSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSCEEEEEECCCCSSSEEEE
T ss_pred             cCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEec-CCCCceEEEEECCCCCCceEEE
Confidence            678999999997             46899999999999999998763    33343 55   9999999985  33899


Q ss_pred             EecCCCeEEEEEcccCCcc--eeee--cCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          226 TAADESGIHLWDLRMLKAP--IQEL--PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       226 ~~~~dg~i~i~d~~~~~~~--~~~~--~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      +++.|++|++||++....+  ...+  ..|...|.+++|+|++ .+|++++.|+.|+||+...
T Consensus       224 s~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          224 SVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG-NVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             EEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSS-CCEEEEETTSCEEEEEECT
T ss_pred             EEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCC-CEEEEEcCCCcEEEEEECC
Confidence            9999999999999863221  1223  4678899999999999 9999999999999999875

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=3.6e-34  Score=251.09  Aligned_cols=276  Identities=15%  Similarity=0.268  Sum_probs=219.6

Q ss_pred             EeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEe
Q 019059           18 CISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQ   97 (346)
Q Consensus        18 ~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~   97 (346)
                      .+.++..  ++..+++|.    .++.|.+|++....   ....+.+|.+.|.+++|  ++..++++    +.|+.|++||
T Consensus       135 ~v~~~~~--d~~~l~~g~----~dg~i~iwd~~~~~---~~~~~~~h~~~v~~l~~--~~~~l~sg----~~dg~i~vwd  199 (435)
T 1p22_A          135 GVYCLQY--DDQKIVSGL----RDNTIKIWDKNTLE---CKRILTGHTGSVLCLQY--DERVIITG----SSDSTVRVWD  199 (435)
T ss_dssp             CEEEEEC--CSSEEEEEE----SSSCEEEEESSSCC---EEEEECCCSSCEEEEEC--CSSEEEEE----ETTSCEEEEE
T ss_pred             cEEEEEE--CCCEEEEEe----CCCeEEEEeCCCCe---EEEEEcCCCCcEEEEEE--CCCEEEEE----cCCCeEEEEE
Confidence            3444444  566777764    67899999987643   34567789999999999  56666664    6899999999


Q ss_pred             cCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeC
Q 019059           98 IPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWD  177 (346)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~  177 (346)
                      +.         +.+.+..+..|...|.+++|+++   .+++++.|+.|++||+.++......  ....+|...+.+++| 
T Consensus       200 ~~---------~~~~~~~~~~h~~~v~~l~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~--~~~~~~~~~v~~~~~-  264 (435)
T 1p22_A          200 VN---------TGEMLNTLIHHCEAVLHLRFNNG---MMVTCSKDRSIAVWDMASPTDITLR--RVLVGHRAAVNVVDF-  264 (435)
T ss_dssp             SS---------SCCEEEEECCCCSCEEEEECCTT---EEEEEETTSCEEEEECSSSSCCEEE--EEECCCSSCEEEEEE-
T ss_pred             CC---------CCcEEEEEcCCCCcEEEEEEcCC---EEEEeeCCCcEEEEeCCCCCCceee--eEecCCCCcEEEEEe-
Confidence            98         67788889999999999999743   4788889999999999876543211  223456778999999 


Q ss_pred             CCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcc
Q 019059          178 PHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHW  254 (346)
Q Consensus       178 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  254 (346)
                       +++.+++++.|+.|++||+++++.+..+. +|   +.+++|+  +. .+++|+.||.|++||+++ ..++..+.+|...
T Consensus       265 -~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~--~~-~l~~g~~dg~i~iwd~~~-~~~~~~~~~h~~~  338 (435)
T 1p22_A          265 -DDKYIVSASGDRTIKVWNTSTCEFVRTLN-GHKRGIACLQYR--DR-LVVSGSSDNTIRLWDIEC-GACLRVLEGHEEL  338 (435)
T ss_dssp             -ETTEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEEE--TT-EEEEEETTSCEEEEETTT-CCEEEEECCCSSC
T ss_pred             -CCCEEEEEeCCCeEEEEECCcCcEEEEEc-CCCCcEEEEEeC--CC-EEEEEeCCCeEEEEECCC-CCEEEEEeCCcCc
Confidence             67899999999999999999999888877 44   9999994  44 899999999999999997 5688899999999


Q ss_pred             eEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEee
Q 019059          255 TWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLS  334 (346)
Q Consensus       255 v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  334 (346)
                      |.+++|  ++ .+|++|+.||.|++||++........          ....++..+.+|.+.|.+++|  ++. +|++++
T Consensus       339 v~~~~~--~~-~~l~sg~~dg~i~vwd~~~~~~~~~~----------~~~~~~~~~~~h~~~v~~l~~--~~~-~l~s~s  402 (435)
T 1p22_A          339 VRCIRF--DN-KRIVSGAYDGKIKVWDLVAALDPRAP----------AGTLCLRTLVEHSGRVFRLQF--DEF-QIVSSS  402 (435)
T ss_dssp             EEEEEC--CS-SEEEEEETTSCEEEEEHHHHTSTTSC----------TTTTEEEEECCCSSCCCCEEE--CSS-CEEECC
T ss_pred             EEEEEe--cC-CEEEEEeCCCcEEEEECCCCCCcccc----------ccchheeeccCCCCCeEEEEe--CCC-EEEEEe
Confidence            999999  56 89999999999999999862111000          001267778899999999999  455 799999


Q ss_pred             cCCeEEEeeec
Q 019059          335 YDGRVRNHMLE  345 (346)
Q Consensus       335 ~d~~v~vw~~~  345 (346)
                      .||.|++||+.
T Consensus       403 ~Dg~i~iwd~~  413 (435)
T 1p22_A          403 HDDTILIWDFL  413 (435)
T ss_dssp             SSSEEEEEC--
T ss_pred             CCCEEEEEECC
Confidence            99999999985

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=7.9e-35  Score=247.02  Aligned_cols=249  Identities=13%  Similarity=0.097  Sum_probs=199.4

Q ss_pred             eeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCC-CcEEEE
Q 019059           61 LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGR-HDKLVS  139 (346)
Q Consensus        61 ~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~  139 (346)
                      ..+|.+.|.+++|+|+++.|+++    +.|+.|++|++...      ........+..|...|.+++|+|+++ . ++++
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~----~~d~~v~iw~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~-l~~~   75 (342)
T 1yfq_A            7 EQAPKDYISDIKIIPSKSLLLIT----SWDGSLTVYKFDIQ------AKNVDLLQSLRYKHPLLCCNFIDNTDLQ-IYVG   75 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEE----ETTSEEEEEEEETT------TTEEEEEEEEECSSCEEEEEEEESSSEE-EEEE
T ss_pred             ccCCCCcEEEEEEcCCCCEEEEE----cCCCeEEEEEeCCC------CccccceeeeecCCceEEEEECCCCCcE-EEEE
Confidence            34799999999999999888885    58999999999721      01123455568999999999999987 5 7777


Q ss_pred             ecCCeEEEEEc-CCCCCCceeeecccCC--CceeeEEEEeCCCCCcEEEEecCCeEEEEEccC---------CCccceee
Q 019059          140 IDEENIFLWSL-DCSNKNAQVQSKQSSG--MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRS---------MGKTNSIE  207 (346)
Q Consensus       140 ~~d~~i~vwd~-~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~---------~~~~~~~~  207 (346)
                      +.|+.|++||+ .++..      ....+  |...|.+++|+| +..+++++.|+.|++||+++         ++++..+.
T Consensus        76 ~~dg~i~~wd~~~~~~~------~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  148 (342)
T 1yfq_A           76 TVQGEILKVDLIGSPSF------QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK  148 (342)
T ss_dssp             ETTSCEEEECSSSSSSE------EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS
T ss_pred             cCCCeEEEEEeccCCce------EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe
Confidence            88999999999 75532      12234  677999999999 99999999999999999998         77666665


Q ss_pred             ccc-eeEEEeCCCCCcEEEEecCCCeEEEEEccc-CCcc-eeeecCCCcceEEEEeCC-CCCcEEEEecCCCeEEEEecC
Q 019059          208 HAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRM-LKAP-IQELPGHTHWTWAVCCNP-EYDGFILSAGTDSTVNLWLVS  283 (346)
Q Consensus       208 ~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~-~~~~~~~~~~v~~v~~~~-~~~~~l~s~~~d~~i~iwd~~  283 (346)
                      ... +.+++|+|++   +++++.|+.|++||++. .... ......|...+.+++|+| ++ .+|++++.||.|++|+++
T Consensus       149 ~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~~l~~~~~dg~i~i~~~~  224 (342)
T 1yfq_A          149 VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQ-EGYACSSIDGRVAVEFFD  224 (342)
T ss_dssp             SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGG-CEEEEEETTSEEEEEECC
T ss_pred             eCCceEEEEecCCc---EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCC-CEEEEEecCCcEEEEEEc
Confidence            333 9999999875   88889999999999986 4432 334456888999999999 99 999999999999999998


Q ss_pred             CCCCCCCCcccccCCccccccccccccccccc---------eeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          284 TSNHDELPSESLVESPNQRANSLLNSYSDYED---------SVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      ......             ..+....+..|..         .|.+++|+|+++ +|++++.||.|++||++
T Consensus       225 ~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~vwd~~  281 (342)
T 1yfq_A          225 DQGDDY-------------NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK-FLYTAGSDGIISCWNLQ  281 (342)
T ss_dssp             TTCCST-------------TCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC-CEEEEETTSCEEEEETT
T ss_pred             CCCccc-------------ccccceeeecccccccccccceeEEEEEEcCCCC-EEEEecCCceEEEEcCc
Confidence            710000             0145555666644         899999999997 89999999999999986

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-35  Score=257.79  Aligned_cols=281  Identities=14%  Similarity=0.145  Sum_probs=198.9

Q ss_pred             cCCCCeEEEeeeeccccceEEeeecC-CCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEe
Q 019059           50 SSGGTELICEGLFSHPNEIWDLSSCP-FDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLW  128 (346)
Q Consensus        50 ~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  128 (346)
                      |.....+......+|.+.|++++|+| +++.|+++    +.|+.|++||+.......   ..+....+ .|...|.+++|
T Consensus        48 w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~----s~dg~v~vwd~~~~~~~~---~~~~~~~~-~h~~~v~~~~~  119 (437)
T 3gre_A           48 GNLRGKLIATLMENEPNSITSSAVSPGETPYLITG----SDQGVIKIWNLKEIIVGE---VYSSSLTY-DCSSTVTQITM  119 (437)
T ss_dssp             GGCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEE----ETTSEEEEEEHHHHHTTC---CCSCSEEE-ECSSCEEEEEE
T ss_pred             ccccceEEeeeccCCCCceEEEEECCCCCCEEEEe----cCCceEEEeECcccccCc---ccceeeec-cCCCCEEEEEE
Confidence            33333444333378999999999999 88888875    699999999987211100   01223333 58999999999


Q ss_pred             ecCCCCcEEEEecCCeEEEEEcC---CCCCCceeeec-----c--cCCCceeeEEEE--eCCCCCcEEEEecCCeEEEEE
Q 019059          129 WSSGRHDKLVSIDEENIFLWSLD---CSNKNAQVQSK-----Q--SSGMLHYLSGGA--WDPHDVNAVAATCESSVQFWD  196 (346)
Q Consensus       129 ~~~~~~~~~~~~~d~~i~vwd~~---~~~~~~~~~~~-----~--~~~~~~~v~~~~--~~~~~~~l~~~~~d~~i~i~d  196 (346)
                      +|++. .+++++.|+.|++||++   +++........     .  ..++...+.++.  +++++..+++++.|+.|++||
T Consensus       120 ~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd  198 (437)
T 3gre_A          120 IPNFD-AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFD  198 (437)
T ss_dssp             CTTSS-EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEE
T ss_pred             eCCCC-EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEe
Confidence            99888 47777889999999995   33221111100     0  000233455555  667899999999999999999


Q ss_pred             ccCCCccceeecc-c---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeec-CCCcceEEEEeC----CCCCcE
Q 019059          197 LRSMGKTNSIEHA-H---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP-GHTHWTWAVCCN----PEYDGF  267 (346)
Q Consensus       197 ~~~~~~~~~~~~~-~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~v~~~----~~~~~~  267 (346)
                      +++++.+..+... |   |++++|+|++. ++++|+.||.|++||++. ..++..+. .|...|.+++|+    |++ .+
T Consensus       199 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~s~~~-~~  275 (437)
T 3gre_A          199 IRTLERLQIIENSPRHGAVSSICIDEECC-VLILGTTRGIIDIWDIRF-NVLIRSWSFGDHAPITHVEVCQFYGKNS-VI  275 (437)
T ss_dssp             TTTCCEEEEEECCGGGCCEEEEEECTTSC-EEEEEETTSCEEEEETTT-TEEEEEEBCTTCEEEEEEEECTTTCTTE-EE
T ss_pred             CCCCeeeEEEccCCCCCceEEEEECCCCC-EEEEEcCCCeEEEEEcCC-ccEEEEEecCCCCceEEEEeccccCCCc-cE
Confidence            9999988888742 3   99999999998 899999999999999997 66777775 788899999555    566 79


Q ss_pred             EEEecCCCeEEEEecCCCCCCCCC------cccccCCcccccccccccccc--ccceeeEEEeCCCCCcEEEEeecCCeE
Q 019059          268 ILSAGTDSTVNLWLVSTSNHDELP------SESLVESPNQRANSLLNSYSD--YEDSVYGLAWSSREPWIFASLSYDGRV  339 (346)
Q Consensus       268 l~s~~~d~~i~iwd~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~d~~v  339 (346)
                      |++++.|+.|++||+++.......      .......+... .-....+.+  |...|++++|+ +++ +|++++.|+.|
T Consensus       276 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~v~~l~~~-~~~-~l~s~~~d~~i  352 (437)
T 3gre_A          276 VVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEK-GLEELNFCGIRSLNALSTISVS-NDK-ILLTDEATSSI  352 (437)
T ss_dssp             EEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCS-SGGGCCCCCCCSGGGGCCEEEE-TTE-EEEEEGGGTEE
T ss_pred             EEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceeccccc-ccccceecccccCCceEEEEEC-Cce-EEEecCCCCeE
Confidence            999999999999999873210000      00000000000 000012333  77889999999 564 89999999999


Q ss_pred             EEeeec
Q 019059          340 RNHMLE  345 (346)
Q Consensus       340 ~vw~~~  345 (346)
                      ++||+.
T Consensus       353 ~~wd~~  358 (437)
T 3gre_A          353 VMFSLN  358 (437)
T ss_dssp             EEEETT
T ss_pred             EEEECC
Confidence            999985

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-34  Score=251.96  Aligned_cols=243  Identities=17%  Similarity=0.262  Sum_probs=198.5

Q ss_pred             eeeeccccceEEeeecCCCC-ceEEEEeecCCcceEEEEec----CcccCCCCCccce------eeeeeec---------
Q 019059           59 EGLFSHPNEIWDLSSCPFDQ-RIFSTVFSTGESYGAAIWQI----PELYGQLNSPQLE------RIAALDA---------  118 (346)
Q Consensus        59 ~~~~~h~~~v~~~~~~~~~~-~l~~~~~~~~~d~~i~vw~~----~~~~~~~~~~~~~------~~~~~~~---------  118 (346)
                      .....|.+.|.+++|+|+++ .|+++    +.|+.|++|++    .         ..+      ....+..         
T Consensus        39 ~~~~~~~~~v~~~~~s~~~~~~l~~~----~~dg~i~iw~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~  105 (425)
T 1r5m_A           39 LKEIVKLDNIVSSTWNPLDESILAYG----EKNSVARLARIVETDQ---------EGKKYWKLTIIAELRHPFALSASSG  105 (425)
T ss_dssp             CEEEEECSCCSEEEECSSCTTEEEEE----ETBTEEEEEEEEEC---------------CEEEEEEEEEECCCCCC----
T ss_pred             eeeeeccCceEEEEECCCCCcEEEEe----cCCceEEEEEEecccC---------Ccccccccccccccccccccccccc
Confidence            33445779999999999999 66664    68999999999    5         233      2333333         


Q ss_pred             -cCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEc
Q 019059          119 -HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDL  197 (346)
Q Consensus       119 -~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~  197 (346)
                       |...|.+++|+|+++. +++++.|+.|++||. ++.....     ...|...+.+++|+|+++.+++++.|+.|++||+
T Consensus       106 ~~~~~v~~~~~s~~~~~-l~~~~~dg~i~i~~~-~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  178 (425)
T 1r5m_A          106 KTTNQVTCLAWSHDGNS-IVTGVENGELRLWNK-TGALLNV-----LNFHRAPIVSVKWNKDGTHIISMDVENVTILWNV  178 (425)
T ss_dssp             --CBCEEEEEECTTSSE-EEEEETTSCEEEEET-TSCEEEE-----ECCCCSCEEEEEECTTSSEEEEEETTCCEEEEET
T ss_pred             CCCCceEEEEEcCCCCE-EEEEeCCCeEEEEeC-CCCeeee-----ccCCCccEEEEEECCCCCEEEEEecCCeEEEEEC
Confidence             6779999999999984 777788999999993 3322221     2346679999999999999999999999999999


Q ss_pred             cCCCccceee-------------------------------------------------------ccc---eeEEEeCCC
Q 019059          198 RSMGKTNSIE-------------------------------------------------------HAH---VRNVDYDTK  219 (346)
Q Consensus       198 ~~~~~~~~~~-------------------------------------------------------~~~---v~~~~~~~~  219 (346)
                      ++++....+.                                                       ..|   +.+++|+|+
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~  258 (425)
T 1r5m_A          179 ISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDT  258 (425)
T ss_dssp             TTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETT
T ss_pred             CCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCC
Confidence            8665332110                                                       123   899999999


Q ss_pred             CCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCc
Q 019059          220 KKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESP  299 (346)
Q Consensus       220 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  299 (346)
                      ++ ++++++.|+.|++||++. ..++..+..|...|.+++|+|++  +|++++.|+.|++||++.               
T Consensus       259 ~~-~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~---------------  319 (425)
T 1r5m_A          259 NK-LLLSASDDGTLRIWHGGN-GNSQNCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQ---------------  319 (425)
T ss_dssp             TT-EEEEEETTSCEEEECSSS-BSCSEEECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTT---------------
T ss_pred             CC-EEEEEcCCCEEEEEECCC-CccceEecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCC---------------
Confidence            98 899999999999999997 55788888899999999999987  899999999999999998               


Q ss_pred             cccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          300 NQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       300 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                          ++++..+..|...|.+++|+|+++ +|++++.|+.|++|++.
T Consensus       320 ----~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~~~~  360 (425)
T 1r5m_A          320 ----NTLLALSIVDGVPIFAGRISQDGQ-KYAVAFMDGQVNVYDLK  360 (425)
T ss_dssp             ----TEEEEEEECTTCCEEEEEECTTSS-EEEEEETTSCEEEEECH
T ss_pred             ----CcEeEecccCCccEEEEEEcCCCC-EEEEEECCCeEEEEECC
Confidence                788888888999999999999997 89999999999999975

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=4.7e-34  Score=252.48  Aligned_cols=266  Identities=17%  Similarity=0.257  Sum_probs=215.4

Q ss_pred             cceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCC
Q 019059           28 HTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNS  107 (346)
Q Consensus        28 ~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~  107 (346)
                      ...++.|    +.++.|.+|++....   ....+.+|.+.|.+++|+|++ .+++    ++.|+.|++||+.        
T Consensus       132 ~~~l~sg----s~dg~i~vwd~~~~~---~~~~~~~h~~~V~~l~~~~~~-~l~s----~s~dg~i~vwd~~--------  191 (464)
T 3v7d_B          132 DNYVITG----ADDKMIRVYDSINKK---FLLQLSGHDGGVWALKYAHGG-ILVS----GSTDRTVRVWDIK--------  191 (464)
T ss_dssp             TTEEEEE----ETTSCEEEEETTTTE---EEEEECCCSSCEEEEEECSTT-EEEE----EETTSCEEEEETT--------
T ss_pred             CCEEEEE----cCCCcEEEEECCCCc---EEEEEeCCCcCEEEEEEcCCC-EEEE----EeCCCCEEEEECC--------
Confidence            3456665    367899999886642   345677899999999999977 5555    3799999999998        


Q ss_pred             ccceeeeeeeccCCceEEEEeec--CCCCcEEEEecCCeEEEEEcCCCCCCceee------------------ecccCCC
Q 019059          108 PQLERIAALDAHVGKINCVLWWS--SGRHDKLVSIDEENIFLWSLDCSNKNAQVQ------------------SKQSSGM  167 (346)
Q Consensus       108 ~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~------------------~~~~~~~  167 (346)
                       +.+.+..+.+|...|.+++|++  ++. .+++++.|+.|++||+.+........                  .....+|
T Consensus       192 -~~~~~~~~~~h~~~v~~l~~~~~~~~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (464)
T 3v7d_B          192 -KGCCTHVFEGHNSTVRCLDIVEYKNIK-YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH  269 (464)
T ss_dssp             -TTEEEEEECCCSSCEEEEEEEESSSCE-EEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCC
T ss_pred             -CCcEEEEECCCCCccEEEEEecCCCCC-EEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCc
Confidence             6788889999999999999995  445 47777889999999998765332210                  1123445


Q ss_pred             ceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcc
Q 019059          168 LHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAP  244 (346)
Q Consensus       168 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  244 (346)
                      ...+.++  ++++..+++++.|+.|++||+++++++..+. +|   |.+++|+|+++ .+++|+.||.|++||+++ ..+
T Consensus       270 ~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~sg~~dg~i~vwd~~~-~~~  344 (464)
T 3v7d_B          270 MASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILS-GHTDRIYSTIYDHERK-RCISASMDTTIRIWDLEN-GEL  344 (464)
T ss_dssp             SSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEEETTTT-EEEEEETTSCEEEEETTT-TEE
T ss_pred             cceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCC-CcE
Confidence            5566665  5678899999999999999999998887776 44   99999999998 899999999999999997 668


Q ss_pred             eeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCC
Q 019059          245 IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS  324 (346)
Q Consensus       245 ~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  324 (346)
                      +..+.+|...|.++.|++   .+|++++.||.|++||++.                   ....... .|...+..++|+|
T Consensus       345 ~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~v~vwd~~~-------------------~~~~~~~-~~~~~~~~~~~~~  401 (464)
T 3v7d_B          345 MYTLQGHTALVGLLRLSD---KFLVSAAADGSIRGWDAND-------------------YSRKFSY-HHTNLSAITTFYV  401 (464)
T ss_dssp             EEEECCCSSCEEEEEECS---SEEEEEETTSEEEEEETTT-------------------CCEEEEE-ECTTCCCEEEEEE
T ss_pred             EEEEeCCCCcEEEEEEcC---CEEEEEeCCCcEEEEECCC-------------------Cceeeee-cCCCCccEEEEEe
Confidence            889999999999999983   7899999999999999997                   4444433 3556678899999


Q ss_pred             CCCcEEEEeecCCeEEEeeec
Q 019059          325 REPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       325 ~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      ++. ++++++ |+.|++||++
T Consensus       402 ~~~-~l~~~~-dg~i~iwd~~  420 (464)
T 3v7d_B          402 SDN-ILVSGS-ENQFNIYNLR  420 (464)
T ss_dssp             CSS-EEEEEE-TTEEEEEETT
T ss_pred             CCC-EEEEec-CCeEEEEECC
Confidence            997 888888 9999999985

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=5e-35  Score=250.38  Aligned_cols=258  Identities=13%  Similarity=0.173  Sum_probs=199.4

Q ss_pred             eeeeccccceEEeeecCC---CC-ceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeec-----cCCceEEEEee
Q 019059           59 EGLFSHPNEIWDLSSCPF---DQ-RIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA-----HVGKINCVLWW  129 (346)
Q Consensus        59 ~~~~~h~~~v~~~~~~~~---~~-~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~  129 (346)
                      ....+|.+.|.+++|+|+   +. .++++    +.++.|++|++.         ..+.+..+..     |...|.+++|+
T Consensus        12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~----~~~~~v~vw~~~---------~~~~~~~~~~~~~~~~~~~v~~~~~~   78 (366)
T 3k26_A           12 SLKEDHNQPLFGVQFNWHSKEGDPLVFAT----VGSNRVTLYECH---------SQGEIRLLQSYVDADADENFYTCAWT   78 (366)
T ss_dssp             EEECTTCSCEEEEEECTTCCTTSCEEEEE----EETTEEEEEEEC---------GGGCEEEEEEEECSCTTCCEEEEEEE
T ss_pred             EeecCCCCceEEEEEecccCCCCceEEEE----CCCCEEEEEEcC---------CCcEEEeeeeccccCCCCcEEEEEec
Confidence            344589999999999984   33 45554    466699999998         4444444443     56789999999


Q ss_pred             cCCC---CcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCC-CCCcEEEEecCCeEEEEEccCCCccce
Q 019059          130 SSGR---HDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDP-HDVNAVAATCESSVQFWDLRSMGKTNS  205 (346)
Q Consensus       130 ~~~~---~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~  205 (346)
                      |++.   .++++++.|+.|++||+.+++....+     .+|...|.+++|+| ++..+++++.|+.|++||+++++....
T Consensus        79 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  153 (366)
T 3k26_A           79 YDSNTSHPLLAVAGSRGIIRIINPITMQCIKHY-----VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAI  153 (366)
T ss_dssp             ECTTTCCEEEEEEETTCEEEEECTTTCCEEEEE-----ESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             cCCCCCCCEEEEecCCCEEEEEEchhceEeeee-----cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEE
Confidence            9943   24777788999999999876543332     24667999999999 889999999999999999999988777


Q ss_pred             ee--ccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeee----------------------------cCCC
Q 019059          206 IE--HAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL----------------------------PGHT  252 (346)
Q Consensus       206 ~~--~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----------------------------~~~~  252 (346)
                      +.  ..|   |.+++|+|++. .+++++.|+.|++||+++ ......+                            ..|.
T Consensus       154 ~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (366)
T 3k26_A          154 FGGVEGHRDEVLSADYDLLGE-KIMSCGMDHSLKLWRINS-KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHR  231 (366)
T ss_dssp             ECSTTSCSSCEEEEEECTTSS-EEEEEETTSCEEEEESCS-HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCS
T ss_pred             ecccccccCceeEEEECCCCC-EEEEecCCCCEEEEECCC-CccccccceeEEecCCCCcccccceeeccCccccccCCc
Confidence            62  234   99999999998 899999999999999986 3233222                            2389


Q ss_pred             cceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCC--CCcEE
Q 019059          253 HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSR--EPWIF  330 (346)
Q Consensus       253 ~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l  330 (346)
                      ..|.+++|+  + .+|++++.|+.|++||++.........     .........+..+..|...|++++|+|+  +. +|
T Consensus       232 ~~v~~~~~~--~-~~l~~~~~d~~i~~wd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~-~l  302 (366)
T 3k26_A          232 NYVDCVRWL--G-DLILSKSCENAIVCWKPGKMEDDIDKI-----KPSESNVTILGRFDYSQCDIWYMRFSMDFWQK-ML  302 (366)
T ss_dssp             SCCCEEEEE--T-TEEEEECSSSEEEEEEESSTTCCGGGC-----CTTCCCEEEEEEEECSSCCSSCCCCEECTTSS-EE
T ss_pred             ceEEEEEEc--C-CEEEEEecCCEEEEEeCCCcccccccc-----ccCCcchheeccccccCCcEEEEEEcCCCCCc-EE
Confidence            999999998  5 799999999999999998732211000     0011112446677788889999999999  86 99


Q ss_pred             EEeecCCeEEEeeec
Q 019059          331 ASLSYDGRVRNHMLE  345 (346)
Q Consensus       331 ~s~~~d~~v~vw~~~  345 (346)
                      ++++.|+.|++|+++
T Consensus       303 ~~~~~dg~i~vwd~~  317 (366)
T 3k26_A          303 ALGNQVGKLYVWDLE  317 (366)
T ss_dssp             EEECTTSCEEEEECC
T ss_pred             EEEecCCcEEEEECC
Confidence            999999999999986

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=9.2e-34  Score=259.01  Aligned_cols=285  Identities=12%  Similarity=0.149  Sum_probs=216.8

Q ss_pred             cceeeEeeeccCCCCcc-eEEEeecccCCCCeEEEEEecCCCCeEEEeeeecccc---ceEEeeecCC-CCceEEEEeec
Q 019059           13 KYQARCISDVKADTDHT-SFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPN---EIWDLSSCPF-DQRIFSTVFST   87 (346)
Q Consensus        13 ~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~-~~~l~~~~~~~   87 (346)
                      ..+...+..+.+++++. .++.+.    .++.+.+|++...   .....+.+|..   .|.+++|+|+ ++.++++    
T Consensus       157 ~~~~~~v~~~~~~~~~~~~l~~~~----~d~~v~vwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~----  225 (615)
T 1pgu_A          157 SGHSQRINACHLKQSRPMRSMTVG----DDGSVVFYQGPPF---KFSASDRTHHKQGSFVRDVEFSPDSGEFVITV----  225 (615)
T ss_dssp             CSCSSCEEEEEECSSSSCEEEEEE----TTTEEEEEETTTB---EEEEEECSSSCTTCCEEEEEECSTTCCEEEEE----
T ss_pred             ecCCccEEEEEECCCCCcEEEEEe----CCCcEEEEeCCCc---ceeeeecccCCCCceEEEEEECCCCCCEEEEE----
Confidence            33445566677777776 566653    6789999986553   23456778998   9999999999 8878775    


Q ss_pred             CCcceEEEEecCcccCCCCCccceeeeee-e---ccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeec-
Q 019059           88 GESYGAAIWQIPELYGQLNSPQLERIAAL-D---AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK-  162 (346)
Q Consensus        88 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~-~---~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~-  162 (346)
                      +.|+.|++||+.         ..+.+..+ .   .|...|.+++|+ ++. .+++++.|+.|++||+.+++....+... 
T Consensus       226 ~~dg~i~vwd~~---------~~~~~~~~~~~~~~~~~~v~~~~~~-~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~  294 (615)
T 1pgu_A          226 GSDRKISCFDGK---------SGEFLKYIEDDQEPVQGGIFALSWL-DSQ-KFATVGADATIRVWDVTTSKCVQKWTLDK  294 (615)
T ss_dssp             ETTCCEEEEETT---------TCCEEEECCBTTBCCCSCEEEEEES-SSS-EEEEEETTSEEEEEETTTTEEEEEEECCT
T ss_pred             eCCCeEEEEECC---------CCCEeEEecccccccCCceEEEEEc-CCC-EEEEEcCCCcEEEEECCCCcEEEEEcCCC
Confidence            589999999998         66777777 6   899999999999 777 4777788999999999865422211110 


Q ss_pred             ---------------------------------------ccCC---------------------------------Ccee
Q 019059          163 ---------------------------------------QSSG---------------------------------MLHY  170 (346)
Q Consensus       163 ---------------------------------------~~~~---------------------------------~~~~  170 (346)
                                                             ...+                                 |...
T Consensus       295 ~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~  374 (615)
T 1pgu_A          295 QQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNL  374 (615)
T ss_dssp             TCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSC
T ss_pred             CcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCc
Confidence                                                   0112                                 2333


Q ss_pred             eEEEEeCCCCCcEEEEecCCeEEEEEcc----------------------------------------------------
Q 019059          171 LSGGAWDPHDVNAVAATCESSVQFWDLR----------------------------------------------------  198 (346)
Q Consensus       171 v~~~~~~~~~~~l~~~~~d~~i~i~d~~----------------------------------------------------  198 (346)
                      +.+++| +++..+++++.|+.|++||++                                                    
T Consensus       375 v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (615)
T 1pgu_A          375 IVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVS  453 (615)
T ss_dssp             EEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEE
T ss_pred             eEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEE
Confidence            444444 234555555555555555543                                                    


Q ss_pred             ----------------------CCCcc-ceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecC-C
Q 019059          199 ----------------------SMGKT-NSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG-H  251 (346)
Q Consensus       199 ----------------------~~~~~-~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~  251 (346)
                                            +++.. ..+ ..|   |.+++|+|+++ +|++++.|+.|++||+++ ..++..+.+ |
T Consensus       454 ~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~-~l~~~~~dg~i~iw~~~~-~~~~~~~~~~h  530 (615)
T 1pgu_A          454 LSQNYVAVGLEEGNTIQVFKLSDLEVSFDLK-TPLRAKPSYISISPSET-YIAAGDVMGKILLYDLQS-REVKTSRWAFR  530 (615)
T ss_dssp             ECSSEEEEEETTTSCEEEEETTEEEEEEECS-SCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTT-TEEEECCSCCC
T ss_pred             EcCCEEEEeecCCCeEEEEECCCcccccccc-CCccCceEEEEECCCCC-EEEEcCCCCeEEEeeCCC-CcceeEeecCC
Confidence                                  32221 111 123   99999999998 899999999999999987 557777877 9


Q ss_pred             CcceEEEEeCC----------CCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccc-ccccccccccceeeEE
Q 019059          252 THWTWAVCCNP----------EYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRAN-SLLNSYSDYEDSVYGL  320 (346)
Q Consensus       252 ~~~v~~v~~~~----------~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~  320 (346)
                      ...|++++|+|          ++ .+|++++.|+.|++||+..                   + +++..+.+|...|+++
T Consensus       531 ~~~v~~~~~sp~~~~~~~~~~~~-~~l~~~~~dg~i~iw~~~~-------------------~~~~~~~~~~h~~~v~~l  590 (615)
T 1pgu_A          531 TSKINAISWKPAEKGANEEEIEE-DLVATGSLDTNIFIYSVKR-------------------PMKIIKALNAHKDGVNNL  590 (615)
T ss_dssp             SSCEEEEEECCCC------CCSC-CEEEEEETTSCEEEEESSC-------------------TTCCEEETTSSTTCEEEE
T ss_pred             CCceeEEEEcCccccccccccCC-CEEEEEcCCCcEEEEECCC-------------------CceechhhhcCccceEEE
Confidence            99999999999          89 9999999999999999998                   5 7788889999999999


Q ss_pred             EeCCCCCcEEEEeecCCeEEEeeec
Q 019059          321 AWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       321 ~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      +|+|+++  |++++.|+.|++|+++
T Consensus       591 ~~s~~~~--l~s~~~d~~v~iw~~~  613 (615)
T 1pgu_A          591 LWETPST--LVSSGADACIKRWNVV  613 (615)
T ss_dssp             EEEETTE--EEEEETTSCEEEEEEC
T ss_pred             EEcCCCC--eEEecCCceEEEEeee
Confidence            9999985  8999999999999986

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=6.1e-34  Score=243.69  Aligned_cols=284  Identities=14%  Similarity=0.175  Sum_probs=221.9

Q ss_pred             cccceeeEeeeccCCCCc---ceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeec
Q 019059           11 GLKYQARCISDVKADTDH---TSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFST   87 (346)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~   87 (346)
                      .++.+...|..+.++++.   ..+++|.    .++.+.+|++...+.. ....+.+|.+.|.+++|+|+++.|+++    
T Consensus        34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~----~dg~i~iw~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~s~----  104 (368)
T 3mmy_A           34 VTSSPDDSIGCLSFSPPTLPGNFLIAGS----WANDVRCWEVQDSGQT-IPKAQQMHTGPVLDVCWSDDGSKVFTA----  104 (368)
T ss_dssp             CSSCCSSCEEEEEECCTTSSSEEEEEEE----TTSEEEEEEECTTSCE-EEEEEEECSSCEEEEEECTTSSEEEEE----
T ss_pred             eccCCCCceEEEEEcCCCCCceEEEEEC----CCCcEEEEEcCCCCce-eEEEeccccCCEEEEEECcCCCEEEEE----
Confidence            344456678888888884   7777764    6789999999874433 336677899999999999999988885    


Q ss_pred             CCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEe--ecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccC
Q 019059           88 GESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLW--WSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSS  165 (346)
Q Consensus        88 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~  165 (346)
                      +.|+.|++||+.         ..+.+. +..|...|.+++|  ++++. ++++++.|+.|++||+.+++....+...   
T Consensus       105 ~~dg~v~iwd~~---------~~~~~~-~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~---  170 (368)
T 3mmy_A          105 SCDKTAKMWDLS---------SNQAIQ-IAQHDAPVKTIHWIKAPNYS-CVMTGSWDKTLKFWDTRSSNPMMVLQLP---  170 (368)
T ss_dssp             ETTSEEEEEETT---------TTEEEE-EEECSSCEEEEEEEECSSCE-EEEEEETTSEEEEECSSCSSCSEEEECS---
T ss_pred             cCCCcEEEEEcC---------CCCcee-eccccCceEEEEEEeCCCCC-EEEEccCCCcEEEEECCCCcEEEEEecC---
Confidence            689999999998         445544 5579999999999  78877 3777788999999999987655444332   


Q ss_pred             CCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeec---cc-eeEEEeCCCCC---cEEEEecCCCeEEEEEc
Q 019059          166 GMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH---AH-VRNVDYDTKKK---HLLVTAADESGIHLWDL  238 (346)
Q Consensus       166 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~-v~~~~~~~~~~---~~l~~~~~dg~i~i~d~  238 (346)
                         ..+.++.+.  ...+++++.++.+++||++..........   .+ ..++++.++..   ..+++++.|+.|++||+
T Consensus       171 ---~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~  245 (368)
T 3mmy_A          171 ---ERCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYI  245 (368)
T ss_dssp             ---SCEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEES
T ss_pred             ---CCceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEec
Confidence               155666665  45788888999999999987654332221   12 55555554443   13899999999999999


Q ss_pred             ccCC--cceeeecCCCc------------ceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccc
Q 019059          239 RMLK--APIQELPGHTH------------WTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRAN  304 (346)
Q Consensus       239 ~~~~--~~~~~~~~~~~------------~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  304 (346)
                      +...  ..+..+..|..            .|++++|+|++ .+|++++.||.|++||+++                   +
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd~~~-------------------~  305 (368)
T 3mmy_A          246 NPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVH-GTLATVGSDGRFSFWDKDA-------------------R  305 (368)
T ss_dssp             SCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTT-CCEEEEETTSCEEEEETTT-------------------T
T ss_pred             CCCCccccceeeeeeecccccccccccccceEEEEEecCC-CEEEEEccCCeEEEEECCC-------------------C
Confidence            8742  35667777776            79999999999 9999999999999999998                   8


Q ss_pred             ccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEee
Q 019059          305 SLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHM  343 (346)
Q Consensus       305 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~  343 (346)
                      +++..+.+|...|++++|+|+++ +|++++.|+..+.|+
T Consensus       306 ~~~~~~~~~~~~v~~~~~s~~g~-~l~~~s~d~~~~~~~  343 (368)
T 3mmy_A          306 TKLKTSEQLDQPISACCFNHNGN-IFAYASSYDWSKGHE  343 (368)
T ss_dssp             EEEEECCCCSSCEEEEEECTTSS-CEEEEECCCSTTCGG
T ss_pred             cEEEEecCCCCCceEEEECCCCC-eEEEEeccccccccc
Confidence            88999999999999999999997 889998887555444

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=3.5e-34  Score=281.52  Aligned_cols=283  Identities=16%  Similarity=0.238  Sum_probs=238.0

Q ss_pred             eeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEE
Q 019059           15 QARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAA   94 (346)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~   94 (346)
                      +...+..+.+++++..++.|.    .++.|.+|++....   ....+.+|.+.|.+++|+|+++.++++    +.|+.|+
T Consensus       614 h~~~v~~~~~s~~~~~l~s~~----~d~~i~vw~~~~~~---~~~~~~~h~~~v~~~~~s~~~~~l~s~----~~d~~v~  682 (1249)
T 3sfz_A          614 HTDAVYHACFSQDGQRIASCG----ADKTLQVFKAETGE---KLLDIKAHEDEVLCCAFSSDDSYIATC----SADKKVK  682 (1249)
T ss_dssp             CSSCEEEEEECTTSSEEEEEE----TTSCEEEEETTTCC---EEEEECCCSSCEEEEEECTTSSEEEEE----ETTSEEE
T ss_pred             ccccEEEEEECCCCCEEEEEe----CCCeEEEEECCCCC---EEEEeccCCCCEEEEEEecCCCEEEEE----eCCCeEE
Confidence            456777888999999998874    67899999987753   335567899999999999999988885    5899999


Q ss_pred             EEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCc-EEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEE
Q 019059           95 IWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHD-KLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSG  173 (346)
Q Consensus        95 vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~  173 (346)
                      +||+.         +++.+..+..|...|.+++|+|++... +++++.|+.|++||+.++.....+     .+|...|.+
T Consensus       683 vwd~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~-----~~h~~~v~~  748 (1249)
T 3sfz_A          683 IWDSA---------TGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTM-----FGHTNSVNH  748 (1249)
T ss_dssp             EEETT---------TCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEE-----CCCSSCEEE
T ss_pred             EEECC---------CCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhhee-----cCCCCCEEE
Confidence            99998         678888999999999999999975543 455588999999999876533222     357779999


Q ss_pred             EEeCCCCCcEEEEecCCeEEEEEccCCCccceeecc---------------ceeEEEeCCCCCcEEEEecCCCeEEEEEc
Q 019059          174 GAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA---------------HVRNVDYDTKKKHLLVTAADESGIHLWDL  238 (346)
Q Consensus       174 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---------------~v~~~~~~~~~~~~l~~~~~dg~i~i~d~  238 (346)
                      ++|+|+++.+++++.|+.|++||+++++....+...               .+.+++|+|++. .+++++ ++.+.+||+
T Consensus       749 ~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~-~l~~~~-~~~v~~~d~  826 (1249)
T 3sfz_A          749 CRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGD-KIIVAA-KNKVLLFDI  826 (1249)
T ss_dssp             EEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSS-EEEEEE-TTEEEEEET
T ss_pred             EEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCC-EEEEEc-CCcEEEEEe
Confidence            999999999999999999999999988765544311               188999999998 666665 689999999


Q ss_pred             ccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceee
Q 019059          239 RMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVY  318 (346)
Q Consensus       239 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  318 (346)
                      .+.........+|...|.+++|+|++ .++++++.|+.|++||+.+                   +..+..+.+|...|+
T Consensus       827 ~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~dg~v~vwd~~~-------------------~~~~~~~~~h~~~v~  886 (1249)
T 3sfz_A          827 HTSGLLAEIHTGHHSTIQYCDFSPYD-HLAVIALSQYCVELWNIDS-------------------RLKVADCRGHLSWVH  886 (1249)
T ss_dssp             TTCCEEEEEECSSSSCCCEEEECSST-TEEEEECSSSCEEEEETTT-------------------TEEEEEECCCSSCEE
T ss_pred             cCCCceeEEcCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEEcCC-------------------CceeeecCCCccceE
Confidence            98543333344899999999999999 9999999999999999998                   788888999999999


Q ss_pred             EEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          319 GLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       319 ~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      +++|+|+++ .|++++.|+.|++|++.
T Consensus       887 ~v~~spdg~-~l~s~s~dg~v~vw~~~  912 (1249)
T 3sfz_A          887 GVMFSPDGS-SFLTASDDQTIRVWETK  912 (1249)
T ss_dssp             EEEECTTSS-EEEEEETTSCEEEEEHH
T ss_pred             EEEECCCCC-EEEEEeCCCeEEEEEcc
Confidence            999999997 89999999999999963

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.9e-34  Score=237.44  Aligned_cols=244  Identities=17%  Similarity=0.196  Sum_probs=204.3

Q ss_pred             CCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCC
Q 019059           53 GTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSG  132 (346)
Q Consensus        53 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  132 (346)
                      ........+.+|.+.|.+++| |+++.++++    +.|+.|++||+.         ..+....+..|...|.+++|+|++
T Consensus         6 ~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~----~~dg~v~vw~~~---------~~~~~~~~~~~~~~v~~~~~~~~~   71 (313)
T 3odt_A            6 TGYQLSATLKGHDQDVRDVVA-VDDSKVASV----SRDGTVRLWSKD---------DQWLGTVVYTGQGFLNSVCYDSEK   71 (313)
T ss_dssp             CCCEEEEEECCCSSCEEEEEE-EETTEEEEE----ETTSEEEEEEES---------SSEEEEEEEECSSCEEEEEEETTT
T ss_pred             ccHHHHHHhhCCCCCcEEEEe-cCCCEEEEE----EcCCcEEEEECC---------CCEEEEEeecCCccEEEEEECCCC
Confidence            344456778899999999999 888888875    699999999998         667778888999999999999999


Q ss_pred             CCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc--
Q 019059          133 RHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--  210 (346)
Q Consensus       133 ~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--  210 (346)
                      + .+++++.|+.|++|++..........  ...+|...+.+++|  ++..+++++.|+.|++||  .++....+. .|  
T Consensus        72 ~-~l~~~~~dg~i~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~-~~~~  143 (313)
T 3odt_A           72 E-LLLFGGKDTMINGVPLFATSGEDPLY--TLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQ-AHNA  143 (313)
T ss_dssp             T-EEEEEETTSCEEEEETTCCTTSCC-C--EECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEE-CCSS
T ss_pred             C-EEEEecCCCeEEEEEeeecCCCCccc--chhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecc-cCCC
Confidence            8 47777889999999998654322221  22456778999999  577899999999999999  444555554 33  


Q ss_pred             -eeEEEeCC-CCCcEEEEecCCCeEEEEEcccCCcceeeecC-CCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCC
Q 019059          211 -VRNVDYDT-KKKHLLVTAADESGIHLWDLRMLKAPIQELPG-HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNH  287 (346)
Q Consensus       211 -v~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  287 (346)
                       +.+++|.| ++. .+++++.|+.|++||..   .....+.. |...+.+++|+|++ . +++++.|+.|++||+++   
T Consensus       144 ~v~~~~~~~~~~~-~l~~~~~d~~i~i~d~~---~~~~~~~~~~~~~i~~~~~~~~~-~-~~~~~~dg~i~i~d~~~---  214 (313)
T 3odt_A          144 SVWDAKVVSFSEN-KFLTASADKTIKLWQND---KVIKTFSGIHNDVVRHLAVVDDG-H-FISCSNDGLIKLVDMHT---  214 (313)
T ss_dssp             CEEEEEEEETTTT-EEEEEETTSCEEEEETT---EEEEEECSSCSSCEEEEEEEETT-E-EEEEETTSEEEEEETTT---
T ss_pred             ceeEEEEccCCCC-EEEEEECCCCEEEEecC---ceEEEEeccCcccEEEEEEcCCC-e-EEEccCCCeEEEEECCc---
Confidence             99999988 666 89999999999999943   35666776 89999999999999 6 99999999999999998   


Q ss_pred             CCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          288 DELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                                      ++++..+.+|...|++++|+|++.  |++++.|+.|++||++
T Consensus       215 ----------------~~~~~~~~~~~~~i~~~~~~~~~~--l~~~~~dg~v~iwd~~  254 (313)
T 3odt_A          215 ----------------GDVLRTYEGHESFVYCIKLLPNGD--IVSCGEDRTVRIWSKE  254 (313)
T ss_dssp             ----------------CCEEEEEECCSSCEEEEEECTTSC--EEEEETTSEEEEECTT
T ss_pred             ----------------hhhhhhhhcCCceEEEEEEecCCC--EEEEecCCEEEEEECC
Confidence                            788888999999999999999983  7899999999999975

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=3e-34  Score=240.80  Aligned_cols=250  Identities=18%  Similarity=0.313  Sum_probs=194.7

Q ss_pred             cceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCC--CCceEEEEeecCCc
Q 019059           13 KYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPF--DQRIFSTVFSTGES   90 (346)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~~~~~~~d   90 (346)
                      ..+...|.++.+++++..++.|.    .++.+++|++.... ......+.+|.+.|.+++|+|+  +..|+++    +.|
T Consensus        10 ~~H~~~V~~v~~s~~g~~lasgs----~D~~v~lwd~~~~~-~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~----s~D   80 (316)
T 3bg1_A           10 TSHEDMIHDAQMDYYGTRLATCS----SDRSVKIFDVRNGG-QILIADLRGHEGPVWQVAWAHPMYGNILASC----SYD   80 (316)
T ss_dssp             ----CCEEEEEECGGGCEEEEEE----TTTEEEEEEEETTE-EEEEEEEECCSSCEEEEEECCGGGSSCEEEE----ETT
T ss_pred             ccccCeEEEeeEcCCCCEEEEEe----CCCeEEEEEecCCC-cEEEEEEcCCCccEEEEEeCCCCCCCEEEEE----ECC
Confidence            34566788888999999998874    68999999997642 2334667899999999999863  6677764    699


Q ss_pred             ceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecC--CCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCc
Q 019059           91 YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSS--GRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGML  168 (346)
Q Consensus        91 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  168 (346)
                      ++|++||++.       ...+....+.+|...|.+++|+|+  +. ++++++.|+.|++||+......  .......+|.
T Consensus        81 ~~v~iWd~~~-------~~~~~~~~~~~h~~~V~~v~~~p~~~g~-~lasgs~D~~i~lwd~~~~~~~--~~~~~~~~h~  150 (316)
T 3bg1_A           81 RKVIIWREEN-------GTWEKSHEHAGHDSSVNSVCWAPHDYGL-ILACGSSDGAISLLTYTGEGQW--EVKKINNAHT  150 (316)
T ss_dssp             SCEEEECCSS-------SCCCEEEEECCCSSCCCEEEECCTTTCS-CEEEECSSSCEEEEEECSSSCE--EECCBTTSSS
T ss_pred             CEEEEEECCC-------CcceEEEEccCCCCceEEEEECCCCCCc-EEEEEcCCCCEEEEecCCCCCc--ceeeeecccc
Confidence            9999999872       122456677889999999999998  44 4777788999999999864321  1112234577


Q ss_pred             eeeEEEEeCCC-----------------CCcEEEEecCCeEEEEEccCCC---ccceeeccc---eeEEEeCCCC----C
Q 019059          169 HYLSGGAWDPH-----------------DVNAVAATCESSVQFWDLRSMG---KTNSIEHAH---VRNVDYDTKK----K  221 (346)
Q Consensus       169 ~~v~~~~~~~~-----------------~~~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~---v~~~~~~~~~----~  221 (346)
                      ..+.+++|+|+                 +..+++++.|+.|++||++...   +...+. +|   |.+++|+|++    .
T Consensus       151 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~-~h~~~V~~v~~sp~~~~~~~  229 (316)
T 3bg1_A          151 IGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE-AHSDWVRDVAWAPSIGLPTS  229 (316)
T ss_dssp             SCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCB-CCSSCEEEEECCCCSSCSCC
T ss_pred             CCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecc-cCCCceEEEEecCCCCCCCc
Confidence            78999999997                 3689999999999999997653   333443 55   9999999986    4


Q ss_pred             cEEEEecCCCeEEEEEcccCC---cceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          222 HLLVTAADESGIHLWDLRMLK---APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       222 ~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                       +|++++.|++|++||++...   .....+..|...|.+++|+|++ .+|++++.|+.|+||+...
T Consensus       230 -~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          230 -TIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITA-NILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             -EEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTT-CCEEEEESSSCEEEEEECT
T ss_pred             -eEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCC-CEEEEEcCCCeEEEEEECC
Confidence             89999999999999987521   1234456788999999999999 9999999999999999874

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.9e-33  Score=276.29  Aligned_cols=295  Identities=15%  Similarity=0.223  Sum_probs=238.2

Q ss_pred             eeecccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCc-eEEEEee
Q 019059            8 IGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQR-IFSTVFS   86 (346)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~~~~~~   86 (346)
                      .+..+..+...+..+.+++++..+++|+    .++.+.+|++....   ....+.+|...|.+++|+|++.. ++++   
T Consensus       649 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~----~d~~v~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~s---  718 (1249)
T 3sfz_A          649 KLLDIKAHEDEVLCCAFSSDDSYIATCS----ADKKVKIWDSATGK---LVHTYDEHSEQVNCCHFTNKSNHLLLAT---  718 (1249)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEE----TTSEEEEEETTTCC---EEEEEECCSSCEEEEEECSSSSCCEEEE---
T ss_pred             EEEEeccCCCCEEEEEEecCCCEEEEEe----CCCeEEEEECCCCc---eEEEEcCCCCcEEEEEEecCCCceEEEE---
Confidence            4444555566778888899998888874    57899999987643   34566789999999999996443 3333   


Q ss_pred             cCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeee-----
Q 019059           87 TGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQS-----  161 (346)
Q Consensus        87 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~-----  161 (346)
                      ++.|+.|++||+.         ..+.+..+.+|...|.+++|+|+++. +++++.|+.|++||+.++........     
T Consensus       719 g~~d~~v~vwd~~---------~~~~~~~~~~h~~~v~~~~~sp~~~~-l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~  788 (1249)
T 3sfz_A          719 GSNDFFLKLWDLN---------QKECRNTMFGHTNSVNHCRFSPDDEL-LASCSADGTLRLWDVRSANERKSINVKRFFL  788 (1249)
T ss_dssp             EETTSCEEEEETT---------SSSEEEEECCCSSCEEEEEECSSTTE-EEEEESSSEEEEEEGGGTEEEEEEECCCCC-
T ss_pred             EeCCCeEEEEECC---------CcchhheecCCCCCEEEEEEecCCCE-EEEEECCCeEEEEeCCCCcccceeccccccc
Confidence            4789999999998         67788889999999999999999984 77778899999999876532211110     


Q ss_pred             ---------------------------------------------cccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEE
Q 019059          162 ---------------------------------------------KQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWD  196 (346)
Q Consensus       162 ---------------------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d  196 (346)
                                                                   ....+|...+.+++|+|++..+++++.|+.|++||
T Consensus       789 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd  868 (1249)
T 3sfz_A          789 SSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWN  868 (1249)
T ss_dssp             -------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEE
T ss_pred             ccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence                                                         00125667889999999999999999999999999


Q ss_pred             ccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCc----------------------------ce
Q 019059          197 LRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA----------------------------PI  245 (346)
Q Consensus       197 ~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----------------------------~~  245 (346)
                      +.++.....+. +|   |.+++|+|++. .+++++.|+.|++||++....                            .+
T Consensus       869 ~~~~~~~~~~~-~h~~~v~~v~~spdg~-~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  946 (1249)
T 3sfz_A          869 IDSRLKVADCR-GHLSWVHGVMFSPDGS-SFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGL  946 (1249)
T ss_dssp             TTTTEEEEEEC-CCSSCEEEEEECTTSS-EEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSE
T ss_pred             cCCCceeeecC-CCccceEEEEECCCCC-EEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcce
Confidence            99988877776 55   99999999998 899999999999999763110                            00


Q ss_pred             e--------eecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccccccccee
Q 019059          246 Q--------ELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSV  317 (346)
Q Consensus       246 ~--------~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  317 (346)
                      .        ....+...+.+++|+|++ .++++|+.||.|++||+..                   ++....+.+|...|
T Consensus       947 ~~~~~~~~~~~~~~~~~i~~~~~sp~g-~~l~~g~~~g~i~i~d~~~-------------------~~~~~~~~~h~~~v 1006 (1249)
T 3sfz_A          947 QLIAGKTGQIDYLPEAQVSCCCLSPHL-EYVAFGDEDGAIKIIELPN-------------------NRVFSSGVGHKKAV 1006 (1249)
T ss_dssp             EEEEESSCCEEEECCSCEEEEEECTTS-SEEEEEETTSCCEEEETTT-------------------TSCEEECCCCSSCC
T ss_pred             EEEecCcceEEEcccCcEEEEEEcCCC-CEEEEEcCCCCEEEEEcCC-------------------CceeeecccCCCce
Confidence            0        011234678999999999 9999999999999999998                   78888888999999


Q ss_pred             eEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          318 YGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       318 ~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      ++++|+|+++ +|++++.|+.|++|++.
T Consensus      1007 ~~l~~s~dg~-~l~s~~~dg~i~vwd~~ 1033 (1249)
T 3sfz_A         1007 RHIQFTADGK-TLISSSEDSVIQVWNWQ 1033 (1249)
T ss_dssp             CCEEECSSSS-CEEEECSSSBEEEEETT
T ss_pred             EEEEECCCCC-EEEEEcCCCEEEEEECC
Confidence            9999999997 89999999999999975

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.2e-34  Score=267.87  Aligned_cols=306  Identities=9%  Similarity=0.006  Sum_probs=206.3

Q ss_pred             EeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCe-EEE-------eeeeccccceEEeeecCCCCceEEEEeecCC
Q 019059           18 CISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTE-LIC-------EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGE   89 (346)
Q Consensus        18 ~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~-~~~-------~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~   89 (346)
                      .+..+.++++...+++|.    .++.|.+|++...... ...       ..+.+|.+.|.+++|+|++..++++   ++.
T Consensus       100 ~V~~v~~sp~g~~l~sgs----~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~---g~~  172 (902)
T 2oaj_A          100 KITSIDTDASLDWMLIGL----QNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLI---SYE  172 (902)
T ss_dssp             CEEEEECCTTCSEEEEEE----TTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEE---ECS
T ss_pred             CEEEEEECCCCCEEEEEc----CCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEE---EeC
Confidence            567788889999998885    5789999998764211 000       2346799999999999976444444   478


Q ss_pred             cceEEEEecCcccCCCCCccceeeeeeecc------------------CCceEEEEeecCCCCcEEEEecCCeEEEEEcC
Q 019059           90 SYGAAIWQIPELYGQLNSPQLERIAALDAH------------------VGKINCVLWWSSGRHDKLVSIDEENIFLWSLD  151 (346)
Q Consensus        90 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~------------------~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~  151 (346)
                      |+.| +||+.         ..+++..+..|                  ...|.+++|+|+|.. +++++.|+.|++||+.
T Consensus       173 dg~v-lWd~~---------~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~-lasgs~Dg~i~lWd~~  241 (902)
T 2oaj_A          173 YVTL-TYSLV---------ENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLH-IITIHEDNSLVFWDAN  241 (902)
T ss_dssp             SCEE-EEETT---------TTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSE-EEEEETTCCEEEEETT
T ss_pred             CCcE-EEECC---------CCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCE-EEEEECCCeEEEEECC
Confidence            9999 99998         55666666544                  578999999999984 7777899999999998


Q ss_pred             CCCCCceeeecc---cC----------CCceeeEEEEeC----CCC-Cc-------------------------------
Q 019059          152 CSNKNAQVQSKQ---SS----------GMLHYLSGGAWD----PHD-VN-------------------------------  182 (346)
Q Consensus       152 ~~~~~~~~~~~~---~~----------~~~~~v~~~~~~----~~~-~~-------------------------------  182 (346)
                      +++.........   +.          .+...|.+++|+    |++ ..                               
T Consensus       242 ~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~  321 (902)
T 2oaj_A          242 SGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSY  321 (902)
T ss_dssp             TCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCH
T ss_pred             CCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccch
Confidence            765322100000   00          123356666663    322 12                               


Q ss_pred             ---------------------------------------------EEEEecCCeEEEEEccCCCccce-------ee---
Q 019059          183 ---------------------------------------------AVAATCESSVQFWDLRSMGKTNS-------IE---  207 (346)
Q Consensus       183 ---------------------------------------------l~~~~~d~~i~i~d~~~~~~~~~-------~~---  207 (346)
                                                                   +++++.|+.|++||+.++.....       +.   
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~  401 (902)
T 2oaj_A          322 EGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLR  401 (902)
T ss_dssp             HHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBT
T ss_pred             hhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccC
Confidence                                                         33333445566666654432111       00   


Q ss_pred             ------------------------------ccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcce--eee----
Q 019059          208 ------------------------------HAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPI--QEL----  248 (346)
Q Consensus       208 ------------------------------~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~----  248 (346)
                                                    .+|   +.+++|+|+++ ++++|+.|++|++||+.... ..  ..+    
T Consensus       402 ~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~-~laSgs~DgtVrlWd~~~g~-~~~~~~~~~~l  479 (902)
T 2oaj_A          402 PLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGT-AFITGHSNGSVRIYDASHGD-IQDNASFEVNL  479 (902)
T ss_dssp             TBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEE-EEEEEETTSEEEEEESSCCT-TTTTBCEEEEH
T ss_pred             CCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCc-EEEEecCCCcEEEEECCCcc-ccCCceEEeec
Confidence                                          011   44566788887 99999999999999998632 11  111    


Q ss_pred             c-----CCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCC-----CCCcc----c----ccC-------------
Q 019059          249 P-----GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHD-----ELPSE----S----LVE-------------  297 (346)
Q Consensus       249 ~-----~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-----~~~~~----~----~~~-------------  297 (346)
                      .     +|...|.+|+|+|++ ++||+|+.||+|+|||+......     +....    .    ...             
T Consensus       480 ~~~~~~~h~~~V~svafspdg-~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  558 (902)
T 2oaj_A          480 SRTLNKAKELAVDKISFAAET-LELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAP  558 (902)
T ss_dssp             HHHTTCSSSCCEEEEEEETTT-TEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCC
T ss_pred             hhhcCCCCCCceeEEEecCCC-CeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCC
Confidence            1     788999999999999 99999999999999999864210     00000    0    000             


Q ss_pred             CccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeecC
Q 019059          298 SPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLEK  346 (346)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~~  346 (346)
                      ...+...+++..+.+|.+.|++++|+|+|  +||+|+.|++|++||+++
T Consensus       559 ~~~~~g~~~~~~l~~h~~~V~svafSpdG--~lAsgs~D~tv~lwd~~~  605 (902)
T 2oaj_A          559 TGVRQGFMPSTAVHANKGKTSAINNSNIG--FVGIAYAAGSLMLIDRRG  605 (902)
T ss_dssp             TTCSEEEEEEEEECCCSCSEEEEEECBTS--EEEEEETTSEEEEEETTT
T ss_pred             CCCCCccceeEEEEcCCCcEEEEEecCCc--EEEEEeCCCcEEEEECCC
Confidence            00001124567788899999999999998  799999999999999863

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.7e-33  Score=244.39  Aligned_cols=248  Identities=12%  Similarity=0.162  Sum_probs=193.6

Q ss_pred             ceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeec-CCCCcEEEEecCCeE
Q 019059           67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWS-SGRHDKLVSIDEENI  145 (346)
Q Consensus        67 ~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~d~~i  145 (346)
                      ....++++|+...++++   ++.||.|+||++.....     ....+..+.+|.+.|.+++|+| ++. ++++++.|+.|
T Consensus        36 ~~~~~~~~~~~~~~~~~---~~~~g~i~v~~~~~~~~-----~~~~~~~~~~h~~~V~~~~~~p~~~~-~l~s~s~dg~v  106 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICE---ASGGGAFLVLPLGKTGR-----VDKNVPLVCGHTAPVLDIAWCPHNDN-VIASGSEDCTV  106 (402)
T ss_dssp             SSCSEEECSSEEEEEBC---CSSSCCEEEEETTCCEE-----CCTTCCCBCCCSSCEEEEEECTTCTT-EEEEEETTSEE
T ss_pred             CCCcEEECCCeEEEEEE---EcCCCEEEEEECccCCC-----CCCCCceEecCCCCEEEEEeCCCCCC-EEEEEeCCCeE
Confidence            44567888877666554   57899999999963100     1134456778999999999999 665 57777889999


Q ss_pred             EEEEcCCCCCCcee--eecccCCCceeeEEEEeCCCC-CcEEEEecCCeEEEEEccCCCccceee-ccc---eeEEEeCC
Q 019059          146 FLWSLDCSNKNAQV--QSKQSSGMLHYLSGGAWDPHD-VNAVAATCESSVQFWDLRSMGKTNSIE-HAH---VRNVDYDT  218 (346)
Q Consensus       146 ~vwd~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~---v~~~~~~~  218 (346)
                      ++||+.++......  ......+|...|.+++|+|++ ..+++++.|+.|++||+++++....+. ..|   |.+++|+|
T Consensus       107 ~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~  186 (402)
T 2aq5_A          107 MVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR  186 (402)
T ss_dssp             EEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECT
T ss_pred             EEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECC
Confidence            99999876421110  011123577799999999998 578899999999999999998888773 244   99999999


Q ss_pred             CCCcEEEEecCCCeEEEEEcccCCcceeee-cCCCcc-eEEEEeCCCCCcEEEEe---cCCCeEEEEecCCCCCCCCCcc
Q 019059          219 KKKHLLVTAADESGIHLWDLRMLKAPIQEL-PGHTHW-TWAVCCNPEYDGFILSA---GTDSTVNLWLVSTSNHDELPSE  293 (346)
Q Consensus       219 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~-v~~v~~~~~~~~~l~s~---~~d~~i~iwd~~~~~~~~~~~~  293 (346)
                      ++. +|++++.|+.|++||+++ ...+..+ ..|... +.++.|+|++ .+|++|   +.|+.|++||++.         
T Consensus       187 ~~~-~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~~~~d~~i~iwd~~~---------  254 (402)
T 2aq5_A          187 DGA-LICTSCRDKRVRVIEPRK-GTVVAEKDRPHEGTRPVHAVFVSEG-KILTTGFSRMSERQVALWDTKH---------  254 (402)
T ss_dssp             TSS-CEEEEETTSEEEEEETTT-TEEEEEEECSSCSSSCCEEEECSTT-EEEEEEECTTCCEEEEEEETTB---------
T ss_pred             CCC-EEEEEecCCcEEEEeCCC-CceeeeeccCCCCCcceEEEEcCCC-cEEEEeccCCCCceEEEEcCcc---------
Confidence            998 899999999999999997 5567777 678766 8999999999 999999   7999999999987         


Q ss_pred             cccCCcccccccc-cccc-ccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          294 SLVESPNQRANSL-LNSY-SDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       294 ~~~~~~~~~~~~~-~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                                .+. +... ..|...+.+++|+|+++.++++++.|+.|++|+++
T Consensus       255 ----------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~  298 (402)
T 2aq5_A          255 ----------LEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEIT  298 (402)
T ss_dssp             ----------CSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEEC
T ss_pred             ----------ccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEec
Confidence                      332 2222 24666799999999998444566689999999986

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=2.9e-33  Score=255.67  Aligned_cols=282  Identities=15%  Similarity=0.172  Sum_probs=216.4

Q ss_pred             cceeeE-eeeccCCC--CcceEEEeecccCCCCeEEEEEecCCC-----CeEEEeeeeccccceEEeeecCCCCceEEEE
Q 019059           13 KYQARC-ISDVKADT--DHTSFLTGTLSLKEENEVHLLRLSSGG-----TELICEGLFSHPNEIWDLSSCPFDQRIFSTV   84 (346)
Q Consensus        13 ~~~~~~-~~~~~~~~--~~~~~~~g~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   84 (346)
                      ..+... +..+.+++  ++..++.|.    .++.+.+|++....     .......+..|...|.+++|+|+++.++++.
T Consensus        60 ~~h~~~~v~~~~~sp~~~~~~l~s~~----~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  135 (615)
T 1pgu_A           60 TGHGSSVVTTVKFSPIKGSQYLCSGD----ESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG  135 (615)
T ss_dssp             CTTTTSCEEEEEECSSTTCCEEEEEE----TTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             ecCCCceEEEEEECcCCCCCEEEEec----CCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEec
Confidence            334455 78888888  888888875    47899999996431     1233456678999999999999999998874


Q ss_pred             eecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeeccc
Q 019059           85 FSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQS  164 (346)
Q Consensus        85 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~  164 (346)
                      ......+.|.+||..           +.+..+..|...|.+++|+|+++.++++++.|+.|++||+.+.+....     .
T Consensus       136 ~~~~~~~~v~~~d~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~-----~  199 (615)
T 1pgu_A          136 EGRDNFGVFISWDSG-----------NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS-----D  199 (615)
T ss_dssp             CCSSCSEEEEETTTC-----------CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEE-----E
T ss_pred             cCCCCccEEEEEECC-----------CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeee-----e
Confidence            111112688888843           567788899999999999999987688889999999999886543222     2


Q ss_pred             CCCce---eeEEEEeCCC-CCcEEEEecCCeEEEEEccCCCccceeec---cc---eeEEEeCCCCCcEEEEecCCCeEE
Q 019059          165 SGMLH---YLSGGAWDPH-DVNAVAATCESSVQFWDLRSMGKTNSIEH---AH---VRNVDYDTKKKHLLVTAADESGIH  234 (346)
Q Consensus       165 ~~~~~---~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~---v~~~~~~~~~~~~l~~~~~dg~i~  234 (346)
                      .+|..   .+.+++|+|+ ++.+++++.|+.|++||+++++.+..+..   .|   |.+++|+ ++. .+++++.|+.|+
T Consensus       200 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~-~l~~~~~d~~i~  277 (615)
T 1pgu_A          200 RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQ-KFATVGADATIR  277 (615)
T ss_dssp             CSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSS-EEEEEETTSEEE
T ss_pred             cccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCC-EEEEEcCCCcEE
Confidence            34666   8999999999 99999999999999999999998888733   44   9999999 887 899999999999


Q ss_pred             EEEcccCCcceeeecCC----CcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccc
Q 019059          235 LWDLRMLKAPIQELPGH----THWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSY  310 (346)
Q Consensus       235 i~d~~~~~~~~~~~~~~----~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (346)
                      +||+++ .+.+..+..+    ...+.++.|. ++ .++++++.|+.|++||++.                   ++++..+
T Consensus       278 ~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~l~~~~~~g~i~~~d~~~-------------------~~~~~~~  335 (615)
T 1pgu_A          278 VWDVTT-SKCVQKWTLDKQQLGNQQVGVVAT-GN-GRIISLSLDGTLNFYELGH-------------------DEVLKTI  335 (615)
T ss_dssp             EEETTT-TEEEEEEECCTTCGGGCEEEEEEE-ET-TEEEEEETTSCEEEEETTE-------------------EEEEEEE
T ss_pred             EEECCC-CcEEEEEcCCCCcccCceeEEEeC-CC-CeEEEEECCCCEEEEECCC-------------------CcEEEEE
Confidence            999997 5567777765    3678888886 77 8999999999999999987                   5555555


Q ss_pred             ccccceeeEEEeCCCCCcEEEEeecCCeEEEee
Q 019059          311 SDYEDSVYGLAWSSREPWIFASLSYDGRVRNHM  343 (346)
Q Consensus       311 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~  343 (346)
                      .+|...|++++| |+    +++++.|+.|++|+
T Consensus       336 ~~~~~~v~~~~~-~~----l~~~~~dg~i~~w~  363 (615)
T 1pgu_A          336 SGHNKGITALTV-NP----LISGSYDGRIMEWS  363 (615)
T ss_dssp             CCCSSCEEEEET-TT----TEEEETTSCEEETT
T ss_pred             eCCCCCEEEEEe-cC----cEEECCCCeEEEEE
Confidence            555555555555 43    34444444444444

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=3.4e-33  Score=246.91  Aligned_cols=240  Identities=16%  Similarity=0.221  Sum_probs=200.6

Q ss_pred             EEeeeeccccce-EEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCc
Q 019059           57 ICEGLFSHPNEI-WDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHD  135 (346)
Q Consensus        57 ~~~~~~~h~~~v-~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  135 (346)
                      ....+.+|...| .++.+  +++.++++    +.|+.|++||+.         +.+.+..+.+|.+.|.+++|++++  .
T Consensus       113 ~~~~l~~h~~~v~~~~~~--~~~~l~sg----s~dg~i~vwd~~---------~~~~~~~~~~h~~~V~~l~~~~~~--~  175 (464)
T 3v7d_B          113 QRTTLRGHMTSVITCLQF--EDNYVITG----ADDKMIRVYDSI---------NKKFLLQLSGHDGGVWALKYAHGG--I  175 (464)
T ss_dssp             EEEEEECCSSSCEEEEEE--ETTEEEEE----ETTSCEEEEETT---------TTEEEEEECCCSSCEEEEEECSTT--E
T ss_pred             ceEEEcCCCCCcEEEEEE--CCCEEEEE----cCCCcEEEEECC---------CCcEEEEEeCCCcCEEEEEEcCCC--E
Confidence            345677898875 66666  45666664    699999999998         678889999999999999999988  4


Q ss_pred             EEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeC--CCCCcEEEEecCCeEEEEEccCCCccce--------
Q 019059          136 KLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWD--PHDVNAVAATCESSVQFWDLRSMGKTNS--------  205 (346)
Q Consensus       136 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~i~d~~~~~~~~~--------  205 (346)
                      +++++.|+.|++||+++++....     ..+|...|.+++|+  +++..+++++.|+.|++||++++.....        
T Consensus       176 l~s~s~dg~i~vwd~~~~~~~~~-----~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~  250 (464)
T 3v7d_B          176 LVSGSTDRTVRVWDIKKGCCTHV-----FEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP  250 (464)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEE-----ECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSS
T ss_pred             EEEEeCCCCEEEEECCCCcEEEE-----ECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcc
Confidence            88889999999999987653222     23567799999998  5778899999999999999998764321        


Q ss_pred             --------------eeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEE
Q 019059          206 --------------IEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFI  268 (346)
Q Consensus       206 --------------~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l  268 (346)
                                    ...+|   +.++  ++++. .+++++.|+.|++||+++ ..++..+.+|...|.+++|+|++ .+|
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~-~l~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l  325 (464)
T 3v7d_B          251 LVFHTPEENPYFVGVLRGHMASVRTV--SGHGN-IVVSGSYDNTLIVWDVAQ-MKCLYILSGHTDRIYSTIYDHER-KRC  325 (464)
T ss_dssp             EEESCGGGCTTEEEEECCCSSCEEEE--EEETT-EEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEEETTT-TEE
T ss_pred             eEeeccCCCeEEEEEccCccceEEEE--cCCCC-EEEEEeCCCeEEEEECCC-CcEEEEecCCCCCEEEEEEcCCC-CEE
Confidence                          12244   5555  56676 899999999999999997 66788899999999999999999 999


Q ss_pred             EEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          269 LSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       269 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      ++++.|+.|++||+++                   ++++..+.+|...|.+++|++  . +|++++.|+.|++||++
T Consensus       326 ~sg~~dg~i~vwd~~~-------------------~~~~~~~~~h~~~v~~~~~~~--~-~l~s~s~dg~v~vwd~~  380 (464)
T 3v7d_B          326 ISASMDTTIRIWDLEN-------------------GELMYTLQGHTALVGLLRLSD--K-FLVSAAADGSIRGWDAN  380 (464)
T ss_dssp             EEEETTSCEEEEETTT-------------------TEEEEEECCCSSCEEEEEECS--S-EEEEEETTSEEEEEETT
T ss_pred             EEEeCCCcEEEEECCC-------------------CcEEEEEeCCCCcEEEEEEcC--C-EEEEEeCCCcEEEEECC
Confidence            9999999999999998                   889999999999999999984  3 89999999999999985

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.1e-33  Score=244.32  Aligned_cols=199  Identities=17%  Similarity=0.188  Sum_probs=161.2

Q ss_pred             ccCCceEEEEeecCCCCcEEEEecCCeEEEEEcC--CCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEE
Q 019059          118 AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLD--CSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFW  195 (346)
Q Consensus       118 ~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~  195 (346)
                      .|...|.+++|+|+++.++++++.|+.|++||+.  ++.....+...   .+...+.+++|+|+++.|++++.++.+++|
T Consensus       100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~---~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~  176 (450)
T 2vdu_B          100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRF---CFSKRPNAISIAEDDTTVIIADKFGDVYSI  176 (450)
T ss_dssp             CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEE---ECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecc---cCCCCceEEEEcCCCCEEEEEeCCCcEEEE
Confidence            3455799999999999644667789999999998  55544333321   234589999999999999999999999999


Q ss_pred             EccCCCccc----eeeccc---eeEEEeCCC---CCcEEEEecCCCeEEEEEcccCCcceee-ecCCCcceEEEEeCCCC
Q 019059          196 DLRSMGKTN----SIEHAH---VRNVDYDTK---KKHLLVTAADESGIHLWDLRMLKAPIQE-LPGHTHWTWAVCCNPEY  264 (346)
Q Consensus       196 d~~~~~~~~----~~~~~~---v~~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~v~~v~~~~~~  264 (346)
                      ++.+++...    .+. +|   |.+++|+|+   +. +|++++.|+.|++||+++ ...+.. +.+|...|.+++|+ ++
T Consensus       177 ~~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~~~-~l~s~~~d~~i~vwd~~~-~~~~~~~~~~h~~~v~~~~~s-d~  252 (450)
T 2vdu_B          177 DINSIPEEKFTQEPIL-GHVSMLTDVHLIKDSDGHQ-FIITSDRDEHIKISHYPQ-CFIVDKWLFGHKHFVSSICCG-KD  252 (450)
T ss_dssp             ETTSCCCSSCCCCCSE-ECSSCEEEEEEEECTTSCE-EEEEEETTSCEEEEEESC-TTCEEEECCCCSSCEEEEEEC-ST
T ss_pred             ecCCcccccccceeee-cccCceEEEEEcCCCCCCc-EEEEEcCCCcEEEEECCC-CceeeeeecCCCCceEEEEEC-CC
Confidence            999877543    333 34   999999999   76 899999999999999987 445655 56899999999999 88


Q ss_pred             CcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccc-------------------------cccceeeE
Q 019059          265 DGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYS-------------------------DYEDSVYG  319 (346)
Q Consensus       265 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~v~~  319 (346)
                       .+|++++.|+.|++||+++                   ++++..+.                         .....|.+
T Consensus       253 -~~l~s~~~d~~v~vwd~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  312 (450)
T 2vdu_B          253 -YLLLSAGGDDKIFAWDWKT-------------------GKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSK  312 (450)
T ss_dssp             -TEEEEEESSSEEEEEETTT-------------------CCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEE
T ss_pred             -CEEEEEeCCCeEEEEECCC-------------------CcEeeeecchhhhhhhhhhcccccccccccccccceEEEEE
Confidence             9999999999999999998                   44333332                         22346899


Q ss_pred             EEeCCCCCcEEEEee-cCCeEEEeee
Q 019059          320 LAWSSREPWIFASLS-YDGRVRNHML  344 (346)
Q Consensus       320 ~~~~~~~~~~l~s~~-~d~~v~vw~~  344 (346)
                      ++|+|+++ +|++++ .|+.|++|++
T Consensus       313 i~~~~~~~-~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          313 IIKSKNLP-FVAFFVEATKCIIILEM  337 (450)
T ss_dssp             EEECSSSS-EEEEEETTCSEEEEEEE
T ss_pred             EEEeCCCC-EEEEEECCCCeEEEEEe
Confidence            99999997 677777 8999999998

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.1e-32  Score=239.03  Aligned_cols=248  Identities=8%  Similarity=0.061  Sum_probs=190.6

Q ss_pred             ccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeee--ccCCceEEEEeecCCCCcEEEEe
Q 019059           63 SHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD--AHVGKINCVLWWSSGRHDKLVSI  140 (346)
Q Consensus        63 ~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~  140 (346)
                      +|.+.|.+++|+|+++.|+++   ++.|+.|++|++..       ...+.+..+.  .|...|.+++|+|+++. +++++
T Consensus       100 ~~~~~v~~~~~s~d~~~l~~~---~~~dg~v~iwd~~~-------~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~~~  168 (450)
T 2vdu_B          100 PIYSYIRNLRLTSDESRLIAC---ADSDKSLLVFDVDK-------TSKNVLKLRKRFCFSKRPNAISIAEDDTT-VIIAD  168 (450)
T ss_dssp             CCCCCEEEEEECTTSSEEEEE---EGGGTEEEEEEECS-------SSSSCEEEEEEEECSSCEEEEEECTTSSE-EEEEE
T ss_pred             ccCCceEEEEEcCCCCEEEEE---ECCCCeEEEEECcC-------CCCceeeeeecccCCCCceEEEEcCCCCE-EEEEe
Confidence            345579999999999997555   47899999999871       1234455554  56789999999999984 67777


Q ss_pred             cCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCC---CCcEEEEecCCeEEEEEccCCCccceeeccc---eeEE
Q 019059          141 DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPH---DVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNV  214 (346)
Q Consensus       141 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~  214 (346)
                      .++.|++|++.+...... ......+|...|.+++|+|+   ++++++++.|+.|++||+++++.+..+..+|   |.++
T Consensus       169 ~~g~v~~~~~~~~~~~~~-~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~  247 (450)
T 2vdu_B          169 KFGDVYSIDINSIPEEKF-TQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSI  247 (450)
T ss_dssp             TTSEEEEEETTSCCCSSC-CCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEE
T ss_pred             CCCcEEEEecCCcccccc-cceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEE
Confidence            899999999987654320 01122346668999999999   8899999999999999999998877755455   9999


Q ss_pred             EeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecC-------------------------CCcceEEEEeCCCCCcEEE
Q 019059          215 DYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG-------------------------HTHWTWAVCCNPEYDGFIL  269 (346)
Q Consensus       215 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------------------~~~~v~~v~~~~~~~~~l~  269 (346)
                      +|+ ++. +|++++.|+.|++||+++ .+++..+..                         ....|.+++|+|++ .+|+
T Consensus       248 ~~s-d~~-~l~s~~~d~~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~  323 (450)
T 2vdu_B          248 CCG-KDY-LLLSAGGDDKIFAWDWKT-GKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNL-PFVA  323 (450)
T ss_dssp             EEC-STT-EEEEEESSSEEEEEETTT-CCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSS-SEEE
T ss_pred             EEC-CCC-EEEEEeCCCeEEEEECCC-CcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCC-CEEE
Confidence            999 887 899999999999999997 445555542                         23568999999999 8888


Q ss_pred             Eec-CCCeEEEEec--CCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeec-------CCeE
Q 019059          270 SAG-TDSTVNLWLV--STSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSY-------DGRV  339 (346)
Q Consensus       270 s~~-~d~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-------d~~v  339 (346)
                      +++ .|+.|++|++  ...                .....+..+..| ..|.+++|+|++  ++++.+.       +..|
T Consensus       324 ~~~~~d~~i~iw~~~~~~~----------------~~l~~~~~~~~~-~~v~~~~~~~~~--~~v~~~~~~~~~~~~~~i  384 (450)
T 2vdu_B          324 FFVEATKCIIILEMSEKQK----------------GDLALKQIITFP-YNVISLSAHNDE--FQVTLDNKESSGVQKNFA  384 (450)
T ss_dssp             EEETTCSEEEEEEECSSST----------------TCEEEEEEEECS-SCEEEEEEETTE--EEEEECCTTCCSSCCCSE
T ss_pred             EEECCCCeEEEEEeccCCC----------------CceeeccEeccC-CceEEEEecCCc--EEEEEecccCCCCCCcce
Confidence            888 8999999999  430                001556667777 679999999953  4555433       5568


Q ss_pred             EEeeec
Q 019059          340 RNHMLE  345 (346)
Q Consensus       340 ~vw~~~  345 (346)
                      .+|.++
T Consensus       385 ~v~~~~  390 (450)
T 2vdu_B          385 KFIEYN  390 (450)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            888764

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=7.3e-33  Score=236.85  Aligned_cols=225  Identities=13%  Similarity=0.092  Sum_probs=178.3

Q ss_pred             CCCCeEEEEEecCCCCeEEEee------eeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCcccee
Q 019059           39 KEENEVHLLRLSSGGTELICEG------LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLER  112 (346)
Q Consensus        39 ~~~~~i~~~~~~~~~~~~~~~~------~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~  112 (346)
                      ..++.+++|++...+..+....      ...+...+.+++|+|||+.++++.  ++.|++|+|||++         +.++
T Consensus       101 ~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as--~~~d~~i~iwd~~---------~~~~  169 (365)
T 4h5i_A          101 KGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIAS--SKVPAIMRIIDPS---------DLTE  169 (365)
T ss_dssp             SCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEE--SCSSCEEEEEETT---------TTEE
T ss_pred             cCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEE--CCCCCEEEEeECC---------CCcE
Confidence            4577899999987665443322      123345689999999999988764  6789999999998         6777


Q ss_pred             eeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCC--
Q 019059          113 IAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCES--  190 (346)
Q Consensus       113 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--  190 (346)
                      +..+ .|...|.+++|+|+|+  +++++.++.+++|+..++.....   .....|...+.+++|+|++..+++++.|+  
T Consensus       170 ~~~~-~~~~~V~~v~fspdg~--~l~s~s~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~  243 (365)
T 4h5i_A          170 KFEI-ETRGEVKDLHFSTDGK--VVAYITGSSLEVISTVTGSCIAR---KTDFDKNWSLSKINFIADDTVLIAASLKKGK  243 (365)
T ss_dssp             EEEE-ECSSCCCEEEECTTSS--EEEEECSSCEEEEETTTCCEEEE---ECCCCTTEEEEEEEEEETTEEEEEEEESSSC
T ss_pred             EEEe-CCCCceEEEEEccCCc--eEEeccceeEEEEEeccCcceee---eecCCCCCCEEEEEEcCCCCEEEEEecCCcc
Confidence            7777 4778899999999999  44444467788888776543322   22345677899999999999999998776  


Q ss_pred             --eEEEEEccCCCcc----ceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceee-ecCCCcceEEEEe
Q 019059          191 --SVQFWDLRSMGKT----NSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQE-LPGHTHWTWAVCC  260 (346)
Q Consensus       191 --~i~i~d~~~~~~~----~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~v~~v~~  260 (346)
                        .+++||+......    ..+. +|   |++++|+|+++ +|++|+.|++|+|||+++ .+++.. +.+|...|++|+|
T Consensus       244 ~~~i~~~~~~~~~~~~~~~~~~~-~~~~~V~~~~~Spdg~-~lasgs~D~~V~iwd~~~-~~~~~~~~~gH~~~V~~v~f  320 (365)
T 4h5i_A          244 GIVLTKISIKSGNTSVLRSKQVT-NRFKGITSMDVDMKGE-LAVLASNDNSIALVKLKD-LSMSKIFKQAHSFAITEVTI  320 (365)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEE-SSCSCEEEEEECTTSC-EEEEEETTSCEEEEETTT-TEEEEEETTSSSSCEEEEEE
T ss_pred             eeEEeecccccceecceeeeeec-CCCCCeEeEEECCCCC-ceEEEcCCCEEEEEECCC-CcEEEEecCcccCCEEEEEE
Confidence              6888998866532    2222 33   99999999998 999999999999999997 556766 4789999999999


Q ss_pred             CCCCCcEEEEecCCCeEEEEecCC
Q 019059          261 NPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       261 ~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      +|+| ++|+++|.|++|+|||+..
T Consensus       321 Spdg-~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          321 SPDS-TYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             CTTS-CEEEEEETTSEEEEEECCT
T ss_pred             CCCC-CEEEEEeCCCeEEEEEcCC
Confidence            9999 9999999999999999965

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=4.1e-33  Score=240.89  Aligned_cols=295  Identities=10%  Similarity=0.033  Sum_probs=190.6

Q ss_pred             eccccee--eEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCC------eEEEeeeeccccceEEeeecC------
Q 019059           10 YGLKYQA--RCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGT------ELICEGLFSHPNEIWDLSSCP------   75 (346)
Q Consensus        10 ~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~h~~~v~~~~~~~------   75 (346)
                      |.+.++.  ..+.+....++...++..    +.++.+.+|.+..+..      .........+...+..+.|++      
T Consensus        10 ~~lpl~~~p~~~~w~~~~~~~~~l~a~----g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (393)
T 4gq1_A           10 YQLPLNVRPYTTTWCSQSPSCSNLLAI----GHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSE   85 (393)
T ss_dssp             EECCTTCCEEEEEECTTSGGGTTEEEE----EESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEEC
T ss_pred             eEecCCCCCeEEEEeCCCCCCCCEEEE----ECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccc
Confidence            4444433  345555556666555543    2467788887654321      111122233445555555543      


Q ss_pred             --------------CCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeec--------CCC
Q 019059           76 --------------FDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWS--------SGR  133 (346)
Q Consensus        76 --------------~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--------~~~  133 (346)
                                    ++..+++    ++.|++|+|||+....    ......+..+.+|.+.|.+++|+|        +++
T Consensus        86 ~~~~~~~~~~~~~~~~~~las----~~~d~~v~lw~~~~~~----~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~  157 (393)
T 4gq1_A           86 NLHDGDGNVNSSPVYSLFLAC----VCQDNTVRLIITKNET----IITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ  157 (393)
T ss_dssp             C----------CCEEEEEEEE----EETTSCEEEEEEETTE----EEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE
T ss_pred             cccCCCcceeecCCCCCEEEE----EeCCCcEEEEECCCCc----cceeeeecccCCCCCceEEEEEccccccccCCCCC
Confidence                          2333444    4789999999987210    001234456789999999999998        666


Q ss_pred             CcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCC-cEEEEecCCeEEEEEccCCCccceee-----
Q 019059          134 HDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDV-NAVAATCESSVQFWDLRSMGKTNSIE-----  207 (346)
Q Consensus       134 ~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~-----  207 (346)
                       ++++++.|++|+|||+.++.......     .|...+.+++|+|++. .+++++.|+.|++||+++++......     
T Consensus       158 -~las~s~D~tv~~Wd~~~~~~~~~~~-----~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~  231 (393)
T 4gq1_A          158 -VIASVGDDCTLIIWRLTDEGPILAGY-----PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELV  231 (393)
T ss_dssp             -EEEEEETTSEEEEEEEETTEEEEEEE-----ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------C
T ss_pred             -EEEEEECCCeEEEEECCCCceeeeec-----CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCc
Confidence             47777899999999998655433333     2455899999999875 68888999999999999876432221     


Q ss_pred             -------------------ccc---eeEEEeC-CCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCC--
Q 019059          208 -------------------HAH---VRNVDYD-TKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNP--  262 (346)
Q Consensus       208 -------------------~~~---v~~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~--  262 (346)
                                         .++   +.++.|+ |++. .+++++.|+.+++||++. ......+..|...+..+.+.|  
T Consensus       232 ~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~-~l~s~s~d~~i~vwd~~~-~~~~~~l~~~~~~~~~~~~~~~~  309 (393)
T 4gq1_A          232 KNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGS-GILAMCKSGAWLRWNLFA-NNDYNEISDSTMKLGPKNLLPNV  309 (393)
T ss_dssp             SCCCSEEEESGGGC------CCSSSCSEEEEETTTTC-EEEEECTTSEEEEEEC--------------------CCSCSE
T ss_pred             ccceEEecccccceeeeecccccccceeeeeecCCCC-EEEEEeCCCCEEEEECcc-CCCCceEeeecCccccEEEcccc
Confidence                               122   7788886 7887 899999999999999986 334444444444443333332  


Q ss_pred             -----------------CCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCC
Q 019059          263 -----------------EYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSR  325 (346)
Q Consensus       263 -----------------~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  325 (346)
                                       .+..++++|+.|+.|+|||+.+                   +++...+.+|..+|++++|+|+
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~-------------------~~~~~~~~~~~~~V~svafspd  370 (393)
T 4gq1_A          310 QGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYE-------------------KDSNSIPIQLGMPIVDFCWHQD  370 (393)
T ss_dssp             EEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTC-------------------TTCCEEEEECSSCEEEEEECTT
T ss_pred             ccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCC-------------------CcEEEEecCCCCcEEEEEEcCC
Confidence                             2325678889999999999998                   7777777888899999999999


Q ss_pred             CCcEEEEeecCCeEEEeeec
Q 019059          326 EPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       326 ~~~~l~s~~~d~~v~vw~~~  345 (346)
                      |+ +||+++.|| +.+|.+.
T Consensus       371 G~-~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          371 GS-HLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             SS-EEEEEESSE-EEEEEEG
T ss_pred             CC-EEEEEeCCC-eEEEEEe
Confidence            97 899988665 6666654

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=8.9e-33  Score=235.55  Aligned_cols=236  Identities=11%  Similarity=0.094  Sum_probs=181.3

Q ss_pred             eeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEE
Q 019059           60 GLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS  139 (346)
Q Consensus        60 ~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  139 (346)
                      ....|.+.|.+++|+|+++.|+++    +.+ .+++|++.         ..+......  ...+..+++.++++.+++++
T Consensus        14 ~~~~h~~~V~~v~fs~dg~~la~g----~~~-~~~iw~~~---------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~   77 (355)
T 3vu4_A           14 PENHVSNPVTDYEFNQDQSCLILS----TLK-SFEIYNVH---------PVAHIMSQE--MRHLSKVRMLHRTNYVAFVT   77 (355)
T ss_dssp             -----CCCCCEEEECTTSSEEEEE----CSS-EEEEEEET---------TEEEEEEEE--CSCCCEEEECTTSSEEEEEC
T ss_pred             ccccCCCceEEEEECCCCCEEEEE----cCC-EEEEEecC---------Ccceeeeee--cCCeEEEEEcCCCCEEEEEE
Confidence            446799999999999999877764    444 57899987         444444332  23578888998888655667


Q ss_pred             ecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCC-CccceeeccceeEEEeCC
Q 019059          140 IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSM-GKTNSIEHAHVRNVDYDT  218 (346)
Q Consensus       140 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~v~~~~~~~  218 (346)
                      +.|+.|++||+.+++....+.      +...+.+++|+++.  +++ +.++.|++||+.++ +.+..+.. ....+++++
T Consensus        78 ~~d~~v~iWd~~~~~~~~~~~------~~~~v~~v~~~~~~--~~~-~~~~~i~i~d~~~~~~~~~~~~~-~~~~~~~s~  147 (355)
T 3vu4_A           78 GVKEVVHIWDDVKKQDVSRIK------VDAPVKDLFLSREF--IVV-SYGDVISVFKFGNPWKRITDDIR-FGGVCEFSN  147 (355)
T ss_dssp             SSTTEEEEEETTTTEEEEEEE------CSSCEEEEEECSSE--EEE-EETTEEEEEESSTTCCBSSCCEE-EEEEEEEET
T ss_pred             CCccEEEEEECCCCcEEEEEE------CCCceEEEEEcCCE--EEE-EEcCEEEEEECCCCceeeEEecc-CCceEEEEc
Confidence            778999999998765443332      23489999998753  333 35889999999988 66666654 333344555


Q ss_pred             CCCcEEEE--ecCCCeEEEEEcccCC--------------cc-eeeecCCCcceEEEEeCCCCCcEEEEecCCCe-EEEE
Q 019059          219 KKKHLLVT--AADESGIHLWDLRMLK--------------AP-IQELPGHTHWTWAVCCNPEYDGFILSAGTDST-VNLW  280 (346)
Q Consensus       219 ~~~~~l~~--~~~dg~i~i~d~~~~~--------------~~-~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~-i~iw  280 (346)
                        . .++.  |+.||.|++||++...              .+ +..+.+|...|++++|+|++ .+|++++.|++ |+||
T Consensus       148 --~-~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g-~~l~s~s~d~~~v~iw  223 (355)
T 3vu4_A          148 --G-LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS-DMVATCSQDGTIIRVF  223 (355)
T ss_dssp             --T-EEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTS-SEEEEEETTCSEEEEE
T ss_pred             --c-EEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCC-CEEEEEeCCCCEEEEE
Confidence              3 4444  7899999999998633              12 77889999999999999999 99999999998 9999


Q ss_pred             ecCCCCCCCCCcccccCCccccccccccccc-c-ccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          281 LVSTSNHDELPSESLVESPNQRANSLLNSYS-D-YEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       281 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      |+++                   ++++..+. + |...|++++|+|+++ +|++++.|++|++|+++
T Consensus       224 d~~~-------------------~~~~~~~~~g~h~~~v~~~~~s~~~~-~l~s~s~d~~v~iw~~~  270 (355)
T 3vu4_A          224 KTED-------------------GVLVREFRRGLDRADVVDMKWSTDGS-KLAVVSDKWTLHVFEIF  270 (355)
T ss_dssp             ETTT-------------------CCEEEEEECTTCCSCEEEEEECTTSC-EEEEEETTCEEEEEESS
T ss_pred             ECCC-------------------CcEEEEEEcCCCCCcEEEEEECCCCC-EEEEEECCCEEEEEEcc
Confidence            9998                   88888887 5 999999999999997 89999999999999985

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=3.9e-32  Score=234.84  Aligned_cols=261  Identities=13%  Similarity=0.132  Sum_probs=207.3

Q ss_pred             CCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeec
Q 019059           39 KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA  118 (346)
Q Consensus        39 ~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~  118 (346)
                      ..++.|.+|++....   ....+..| ..+.+++|+|+++.++++   ++.|+.|++||+.         .++.+..+..
T Consensus         9 ~~d~~v~v~d~~~~~---~~~~~~~~-~~~~~~~~s~dg~~l~~~---~~~d~~i~v~d~~---------~~~~~~~~~~   72 (391)
T 1l0q_A            9 SESDNISVIDVTSNK---VTATIPVG-SNPMGAVISPDGTKVYVA---NAHSNDVSIIDTA---------TNNVIATVPA   72 (391)
T ss_dssp             TTTTEEEEEETTTTE---EEEEEECS-SSEEEEEECTTSSEEEEE---EGGGTEEEEEETT---------TTEEEEEEEC
T ss_pred             CCCCEEEEEECCCCe---EEEEeecC-CCcceEEECCCCCEEEEE---CCCCCeEEEEECC---------CCeEEEEEEC
Confidence            467899999887542   22333444 568999999999988665   3688999999998         6677777765


Q ss_pred             cCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcE-EEEecCCeEEEEEc
Q 019059          119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNA-VAATCESSVQFWDL  197 (346)
Q Consensus       119 ~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~d~  197 (346)
                      +. .+.+++|+|++++++++++.++.|++||+.+++....+..      ...+.+++|+|+++.+ ++++.++.|++||+
T Consensus        73 ~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~------~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~  145 (391)
T 1l0q_A           73 GS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT------GKSPLGLALSPDGKKLYVTNNGDKTVSVINT  145 (391)
T ss_dssp             SS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC------SSSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             CC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC------CCCcceEEECCCCCEEEEEeCCCCEEEEEEC
Confidence            54 8999999999997555656689999999987654332221      2267899999999988 56667999999999


Q ss_pred             cCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEec---C
Q 019059          198 RSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG---T  273 (346)
Q Consensus       198 ~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~---~  273 (346)
                      ++++....+.... +.+++|+|+++.++++++.++.|++||+++ ...+..+. +...+.+++|+|++ .+|++++   .
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~-~~~~~~~~~~~~~g-~~l~~~~~~~~  222 (391)
T 1l0q_A          146 VTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVT-NSVIDTVK-VEAAPSGIAVNPEG-TKAYVTNVDKY  222 (391)
T ss_dssp             TTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEE-CSSEEEEEEECTTS-SEEEEEEECSS
T ss_pred             CCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCC-CeEEEEEe-cCCCccceEECCCC-CEEEEEecCcC
Confidence            9998877776444 999999999985557888999999999987 44555554 56788999999999 7777777   6


Q ss_pred             CCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          274 DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       274 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      ++.|++||+++                   ++.+..+..|.. +.+++|+|+++.++++++.|+.|++||++
T Consensus       223 ~~~v~~~d~~~-------------------~~~~~~~~~~~~-~~~~~~s~dg~~l~~s~~~d~~v~v~d~~  274 (391)
T 1l0q_A          223 FNTVSMIDTGT-------------------NKITARIPVGPD-PAGIAVTPDGKKVYVALSFXNTVSVIDTA  274 (391)
T ss_dssp             CCEEEEEETTT-------------------TEEEEEEECCSS-EEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             CCcEEEEECCC-------------------CeEEEEEecCCC-ccEEEEccCCCEEEEEcCCCCEEEEEECC
Confidence            89999999998                   677777776654 78999999998566888999999999975

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.2e-33  Score=247.59  Aligned_cols=211  Identities=15%  Similarity=0.222  Sum_probs=172.4

Q ss_pred             eeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCC-CCCcEEEEecC
Q 019059          111 ERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDP-HDVNAVAATCE  189 (346)
Q Consensus       111 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d  189 (346)
                      ........|...|++++|+|.+..++++++.||.|+|||+.++......   ...+|...|.+++|+| ++..|++++.|
T Consensus       110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~---~~~gH~~~V~~l~f~p~~~~~l~s~s~D  186 (435)
T 4e54_B          110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFI---KGIGAGGSITGLKFNPLNTNQFYASSME  186 (435)
T ss_dssp             TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEE---CCCSSSCCCCEEEECSSCTTEEEEECSS
T ss_pred             eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEE---EccCCCCCEEEEEEeCCCCCEEEEEeCC
Confidence            3444566789999999999977767888899999999999876543322   2346788999999998 57889999999


Q ss_pred             CeEEEEEccCCCccceeeccc-----eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCC
Q 019059          190 SSVQFWDLRSMGKTNSIEHAH-----VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEY  264 (346)
Q Consensus       190 ~~i~i~d~~~~~~~~~~~~~~-----v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~  264 (346)
                      ++|++||++++... .+...+     +.+++|+|++. +|++|+.||.|++||++.  ..+..+.+|...|++++|+|++
T Consensus       187 ~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~dg~i~~wd~~~--~~~~~~~~h~~~v~~v~~~p~~  262 (435)
T 4e54_B          187 GTTRLQDFKGNILR-VFASSDTINIWFCSLDVSASSR-MVVTGDNVGNVILLNMDG--KELWNLRMHKKKVTHVALNPCC  262 (435)
T ss_dssp             SCEEEEETTSCEEE-EEECCSSCSCCCCCEEEETTTT-EEEEECSSSBEEEEESSS--CBCCCSBCCSSCEEEEEECTTC
T ss_pred             CEEEEeeccCCcee-EEeccCCCCccEEEEEECCCCC-EEEEEeCCCcEeeeccCc--ceeEEEecccceEEeeeecCCC
Confidence            99999999865432 232222     78999999998 999999999999999974  4677889999999999999999


Q ss_pred             CcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059          265 DGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       265 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~  344 (346)
                      +.+|++++.|+.|+|||++....                ...+....+|...|++++|+|++. +|++++.|+.|++|++
T Consensus       263 ~~~~~s~s~d~~v~iwd~~~~~~----------------~~~~~~~~~h~~~v~~~~~spdg~-~l~s~~~D~~i~iwd~  325 (435)
T 4e54_B          263 DWFLATASVDQTVKIWDLRQVRG----------------KASFLYSLPHRHPVNAACFSPDGA-RLLTTDQKSEIRVYSA  325 (435)
T ss_dssp             SSEEEEEETTSBCCEEETTTCCS----------------SSCCSBCCBCSSCEEECCBCTTSS-EEEEEESSSCEEEEES
T ss_pred             ceEEEEecCcceeeEEecccccc----------------cceEEEeeeccccccceeECCCCC-eeEEEcCCCEEEEEEC
Confidence            67899999999999999987110                112233457899999999999997 8999999999999997


Q ss_pred             c
Q 019059          345 E  345 (346)
Q Consensus       345 ~  345 (346)
                      .
T Consensus       326 ~  326 (435)
T 4e54_B          326 S  326 (435)
T ss_dssp             S
T ss_pred             C
Confidence            5

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=4e-32  Score=238.82  Aligned_cols=267  Identities=16%  Similarity=0.358  Sum_probs=215.3

Q ss_pred             eEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEE
Q 019059           17 RCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIW   96 (346)
Q Consensus        17 ~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw   96 (346)
                      ..+..+.++  ...++.|    +.++.+.+|++....   ....+.+|...|.+++|+  +..++++    +.|+.|++|
T Consensus       160 ~~v~~~~~~--~~~l~s~----~~dg~i~vwd~~~~~---~~~~~~~h~~~v~~~~~~--~~~l~s~----s~dg~i~~w  224 (445)
T 2ovr_B          160 GGVWSSQMR--DNIIISG----STDRTLKVWNAETGE---CIHTLYGHTSTVRCMHLH--EKRVVSG----SRDATLRVW  224 (445)
T ss_dssp             SCEEEEEEE--TTEEEEE----ETTSCEEEEETTTTE---EEEEECCCSSCEEEEEEE--TTEEEEE----ETTSEEEEE
T ss_pred             CCEEEEEec--CCEEEEE----eCCCeEEEEECCcCc---EEEEECCCCCcEEEEEec--CCEEEEE----eCCCEEEEE
Confidence            334444443  2345444    467899999887642   345677899999999996  4556664    689999999


Q ss_pred             ecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEe
Q 019059           97 QIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAW  176 (346)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~  176 (346)
                      |+.         ..+.+..+..|...|.+++|  ++. .+++++.|+.|++||+.+++....+     .+|...+.+++|
T Consensus       225 d~~---------~~~~~~~~~~~~~~v~~~~~--~~~-~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~  287 (445)
T 2ovr_B          225 DIE---------TGQCLHVLMGHVAAVRCVQY--DGR-RVVSGAYDFMVKVWDPETETCLHTL-----QGHTNRVYSLQF  287 (445)
T ss_dssp             ESS---------SCCEEEEEECCSSCEEEEEE--CSS-CEEEEETTSCEEEEEGGGTEEEEEE-----CCCSSCEEEEEE
T ss_pred             ECC---------CCcEEEEEcCCcccEEEEEE--CCC-EEEEEcCCCEEEEEECCCCcEeEEe-----cCCCCceEEEEE
Confidence            998         67788889999999999999  555 3788888999999999865432222     346678999999


Q ss_pred             CCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecC---
Q 019059          177 DPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG---  250 (346)
Q Consensus       177 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---  250 (346)
                        ++..+++++.|+.|++||+++++.+..+. +|   +.++.++  +. .+++++.||.|++||+++ ..++..+..   
T Consensus       288 --~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~--~~-~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~  360 (445)
T 2ovr_B          288 --DGIHVVSGSLDTSIRVWDVETGNCIHTLT-GHQSLTSGMELK--DN-ILVSGNADSTVKIWDIKT-GQCLQTLQGPNK  360 (445)
T ss_dssp             --CSSEEEEEETTSCEEEEETTTCCEEEEEC-CCCSCEEEEEEE--TT-EEEEEETTSCEEEEETTT-CCEEEEECSTTS
T ss_pred             --CCCEEEEEeCCCeEEEEECCCCCEEEEEc-CCcccEEEEEEe--CC-EEEEEeCCCeEEEEECCC-CcEEEEEccCCC
Confidence              68899999999999999999999887776 44   7777774  44 899999999999999987 557777775   


Q ss_pred             CCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccc-----ccccceeeEEEeCCC
Q 019059          251 HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSY-----SDYEDSVYGLAWSSR  325 (346)
Q Consensus       251 ~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~  325 (346)
                      |...|.+++|+  + .+|++++.||.|++||+++                   ++.+..+     .+|.+.|++++|+|+
T Consensus       361 ~~~~v~~~~~~--~-~~l~s~~~dg~v~iwd~~~-------------------~~~~~~~~~~~~~~~~~~v~~~~~s~~  418 (445)
T 2ovr_B          361 HQSAVTCLQFN--K-NFVITSSDDGTVKLWDLKT-------------------GEFIRNLVTLESGGSGGVVWRIRASNT  418 (445)
T ss_dssp             CSSCEEEEEEC--S-SEEEEEETTSEEEEEETTT-------------------CCEEEEEEECTTGGGTCEEEEEEECSS
T ss_pred             CCCCEEEEEEC--C-CEEEEEeCCCeEEEEECCC-------------------CceeeeeeccccCCCCceEEEEEecCC
Confidence            88999999996  4 7899999999999999998                   6766666     468889999999999


Q ss_pred             CCcEEEEeecCCe----EEEeeec
Q 019059          326 EPWIFASLSYDGR----VRNHMLE  345 (346)
Q Consensus       326 ~~~~l~s~~~d~~----v~vw~~~  345 (346)
                      +. ++++++.||+    |.+||++
T Consensus       419 ~~-~la~~~~dg~~~~~l~v~df~  441 (445)
T 2ovr_B          419 KL-VCAVGSRNGTEETKLLVLDFD  441 (445)
T ss_dssp             EE-EEEEECSSSSSCCEEEEEECC
T ss_pred             EE-EEEEcccCCCCccEEEEEECC
Confidence            86 8999999997    9999986

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=4.1e-32  Score=230.38  Aligned_cols=260  Identities=14%  Similarity=0.210  Sum_probs=206.0

Q ss_pred             ceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCe-EEEeeeeccccceEEeeecC--CCCceEEEEeecCCc
Q 019059           14 YQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTE-LICEGLFSHPNEIWDLSSCP--FDQRIFSTVFSTGES   90 (346)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~~--~~~~l~~~~~~~~~d   90 (346)
                      .+...|..+.+++++..++.|.    .++.+.+|++...... .....+.+|...|.+++|+|  ++..|+++    +.|
T Consensus         9 gH~~~v~~~~~~~~~~~l~~~~----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~----~~d   80 (351)
T 3f3f_A            9 GHDDLVHDVVYDFYGRHVATCS----SDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASA----SYD   80 (351)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEE----TTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEE----ETT
T ss_pred             ccccceeEEEEcCCCCEEEEee----CCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEE----cCC
Confidence            3456788888889998888874    6789999999865432 34466778999999999999  47777775    689


Q ss_pred             ceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecC--CCCcEEEEecCCeEEEEEcCCCCCCceeeec------
Q 019059           91 YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSS--GRHDKLVSIDEENIFLWSLDCSNKNAQVQSK------  162 (346)
Q Consensus        91 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~------  162 (346)
                      +.|++||+............+.+..+..|...|.+++|+|+  +. .+++++.|+.|++||+.+.+........      
T Consensus        81 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~  159 (351)
T 3f3f_A           81 KTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL-KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVL  159 (351)
T ss_dssp             SCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTCEEEEEECSSTTCTTCCEEEEEEESC
T ss_pred             CeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc-EEEEecCCCcEEEecCCChHHhcccccccccccc
Confidence            99999999843222222233667788899999999999999  77 4777788999999999877654433211      


Q ss_pred             --ccCCCceeeEEEEeCCC---CCcEEEEecCCeEEEEEccCCCc--cceeeccc---eeEEEeCCCCC---cEEEEecC
Q 019059          163 --QSSGMLHYLSGGAWDPH---DVNAVAATCESSVQFWDLRSMGK--TNSIEHAH---VRNVDYDTKKK---HLLVTAAD  229 (346)
Q Consensus       163 --~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~---v~~~~~~~~~~---~~l~~~~~  229 (346)
                        ....+...+.+++|+|+   +..+++++.++.+.+|+...++.  ...+. +|   |.+++|+|++.   .+|++++.
T Consensus       160 ~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~~~~~p~~~~~~~~l~s~~~  238 (351)
T 3f3f_A          160 SIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLP-GHKSLIRSISWAPSIGRWYQLIATGCK  238 (351)
T ss_dssp             SCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECC-CCCSCEEEEEECCCSSCSSEEEEEEET
T ss_pred             ccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecC-CCCcceeEEEECCCCCCcceEEEEEcC
Confidence              12246668999999997   88899999999998888777664  33333 44   99999999982   38999999


Q ss_pred             CCeEEEEEcccCC---------------------------------------------cceeeecCCCcceEEEEeCCCC
Q 019059          230 ESGIHLWDLRMLK---------------------------------------------APIQELPGHTHWTWAVCCNPEY  264 (346)
Q Consensus       230 dg~i~i~d~~~~~---------------------------------------------~~~~~~~~~~~~v~~v~~~~~~  264 (346)
                      ||.|++||++...                                             .++..+.+|...|++++|+|++
T Consensus       239 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~  318 (351)
T 3f3f_A          239 DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTG  318 (351)
T ss_dssp             TSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSS
T ss_pred             CCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCC
Confidence            9999999998631                                             4566778899999999999999


Q ss_pred             CcEEEEecCCCeEEEEecCC
Q 019059          265 DGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       265 ~~~l~s~~~d~~i~iwd~~~  284 (346)
                       .+|++++.||.|++||+..
T Consensus       319 -~~l~s~~~dg~v~iw~~~~  337 (351)
T 3f3f_A          319 -TILSSAGDDGKVRLWKATY  337 (351)
T ss_dssp             -CCEEEEETTSCEEEEEECT
T ss_pred             -CEEEEecCCCcEEEEecCc
Confidence             9999999999999999997

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.5e-32  Score=238.32  Aligned_cols=236  Identities=14%  Similarity=0.248  Sum_probs=190.4

Q ss_pred             ccccc--eEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeec-cCCceEEEEeecCCCCcEEEE
Q 019059           63 SHPNE--IWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA-HVGKINCVLWWSSGRHDKLVS  139 (346)
Q Consensus        63 ~h~~~--v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~  139 (346)
                      +|...  +.+++|++  ..++++    +.|+.|++|++.         .++....+.. |...|.+++|+|+++. ++++
T Consensus        89 ~~~~~~~~~~~~~s~--~~l~~~----~~d~~v~lw~~~---------~~~~~~~~~~~~~~~v~~v~~s~~~~~-l~~~  152 (401)
T 4aez_A           89 GIIDDYYLNLLDWSN--LNVVAV----ALERNVYVWNAD---------SGSVSALAETDESTYVASVKWSHDGSF-LSVG  152 (401)
T ss_dssp             TCCCCTTCBCEEECT--TSEEEE----EETTEEEEEETT---------TCCEEEEEECCTTCCEEEEEECTTSSE-EEEE
T ss_pred             CCcCCceEEEEeecC--CCEEEE----ECCCeEEEeeCC---------CCcEeEeeecCCCCCEEEEEECCCCCE-EEEE
Confidence            45544  34466664  567665    589999999998         5555555544 7889999999999984 7777


Q ss_pred             ecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCC-ccceeeccc---eeEEE
Q 019059          140 IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG-KTNSIEHAH---VRNVD  215 (346)
Q Consensus       140 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~---v~~~~  215 (346)
                      +.||.|++||+.+++....+     .+|...+.+++|+  +..+++++.|+.|++||++... ....+. +|   |.+++
T Consensus       153 ~~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~  224 (401)
T 4aez_A          153 LGNGLVDIYDVESQTKLRTM-----AGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQ-GHSSEVCGLA  224 (401)
T ss_dssp             ETTSCEEEEETTTCCEEEEE-----CCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEE-CCSSCEEEEE
T ss_pred             CCCCeEEEEECcCCeEEEEe-----cCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEc-CCCCCeeEEE
Confidence            88999999999876543332     2567799999994  5789999999999999999544 444444 45   99999


Q ss_pred             eCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEec--CCCeEEEEecCCCCCCCCCcc
Q 019059          216 YDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG--TDSTVNLWLVSTSNHDELPSE  293 (346)
Q Consensus       216 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~  293 (346)
                      |+|++. .+++++.|+.|++||+++ ..++..+..|...|.+++|+|++..++++++  .|+.|++||+++         
T Consensus       225 ~~~~~~-~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~---------  293 (401)
T 4aez_A          225 WRSDGL-QLASGGNDNVVQIWDARS-SIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT---------  293 (401)
T ss_dssp             ECTTSS-EEEEEETTSCEEEEETTC-SSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT---------
T ss_pred             EcCCCC-EEEEEeCCCeEEEccCCC-CCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC---------
Confidence            999998 899999999999999997 5578888899999999999998867888865  799999999998         


Q ss_pred             cccCCccccccccccccccccceeeEEEeCCCCCcEEEE--eecCCeEEEeeec
Q 019059          294 SLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFAS--LSYDGRVRNHMLE  345 (346)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s--~~~d~~v~vw~~~  345 (346)
                                ++++..+. +...|.+++|+|+++ .+++  |+.|+.|++|++.
T Consensus       294 ----------~~~~~~~~-~~~~v~~~~~s~~~~-~l~~~~g~~dg~i~v~~~~  335 (401)
T 4aez_A          294 ----------GARVNTVD-AGSQVTSLIWSPHSK-EIMSTHGFPDNNLSIWSYS  335 (401)
T ss_dssp             ----------CCEEEEEE-CSSCEEEEEECSSSS-EEEEEECTTTCEEEEEEEE
T ss_pred             ----------CCEEEEEe-CCCcEEEEEECCCCC-eEEEEeecCCCcEEEEecC
Confidence                      67777765 556799999999998 6666  4489999999975

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=4.9e-32  Score=235.16  Aligned_cols=285  Identities=14%  Similarity=0.187  Sum_probs=193.9

Q ss_pred             cceeeEeeeccCCC-CcceEEEeecccCCCCeEEEEEecCCCCeEEEee----------eeccccceEEeeecCC-CCce
Q 019059           13 KYQARCISDVKADT-DHTSFLTGTLSLKEENEVHLLRLSSGGTELICEG----------LFSHPNEIWDLSSCPF-DQRI   80 (346)
Q Consensus        13 ~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~----------~~~h~~~v~~~~~~~~-~~~l   80 (346)
                      ..+...+..+.+++ ++..+++|.    .++.+.+|++...........          ..+|...|.+++|+|+ +..+
T Consensus        40 ~~h~~~v~~~~~s~~~~~~l~~~~----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  115 (408)
T 4a11_B           40 RIHGGGINTLDIEPVEGRYMLSGG----SDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMF  115 (408)
T ss_dssp             CCCSSCEEEEEECTTTCCEEEEEE----TTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCE
T ss_pred             eccCCcEEEEEEecCCCCEEEEEc----CCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEE
Confidence            34566788888898 888888874    578999999987543222211          1259999999999994 4455


Q ss_pred             EEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCC--cEEEEecCCeEEEEEcCCCCCCce
Q 019059           81 FSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRH--DKLVSIDEENIFLWSLDCSNKNAQ  158 (346)
Q Consensus        81 ~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~d~~i~vwd~~~~~~~~~  158 (346)
                      +++    +.|+.|++||+.         ..+....+ .+...+.++.|++.+..  ++++++.++.|++||+.+++....
T Consensus       116 ~s~----~~d~~i~iwd~~---------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~  181 (408)
T 4a11_B          116 TSS----SFDKTLKVWDTN---------TLQTADVF-NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHI  181 (408)
T ss_dssp             EEE----ETTSEEEEEETT---------TTEEEEEE-ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEE
T ss_pred             EEE----eCCCeEEEeeCC---------CCccceec-cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeee
Confidence            553    689999999998         56666666 47788999999986432  577778899999999987654433


Q ss_pred             eeecccCCCceeeEEEEeCCCCCc-EEEEecCCeEEEEEccCCC-ccceee--------------ccc---eeEEEeCCC
Q 019059          159 VQSKQSSGMLHYLSGGAWDPHDVN-AVAATCESSVQFWDLRSMG-KTNSIE--------------HAH---VRNVDYDTK  219 (346)
Q Consensus       159 ~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~-~~~~~~--------------~~~---v~~~~~~~~  219 (346)
                      +     ..|...+.+++|+|+++. +++++.|+.|++||++++. ....+.              ..|   |.+++|+|+
T Consensus       182 ~-----~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  256 (408)
T 4a11_B          182 L-----QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSD  256 (408)
T ss_dssp             E-----CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTT
T ss_pred             e-----cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCC
Confidence            3     246668999999999996 7788899999999998765 222220              133   999999999


Q ss_pred             CCcEEEEecCCCeEEEEEcccCC----------------------------------------------cceeeecCCCc
Q 019059          220 KKHLLVTAADESGIHLWDLRMLK----------------------------------------------APIQELPGHTH  253 (346)
Q Consensus       220 ~~~~l~~~~~dg~i~i~d~~~~~----------------------------------------------~~~~~~~~~~~  253 (346)
                      +. .+++++.|+.|++||+++..                                              .++..+.+|..
T Consensus       257 ~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~  335 (408)
T 4a11_B          257 GL-HLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYK  335 (408)
T ss_dssp             SS-EEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSS
T ss_pred             CC-EEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCC
Confidence            98 89999999999999987532                                              23455677999


Q ss_pred             ceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEe
Q 019059          254 WTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASL  333 (346)
Q Consensus       254 ~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  333 (346)
                      .|++++|+|++ .+|++++.||.|++||+++                   .+++.....+.   ....+.|.....+.+.
T Consensus       336 ~v~~~~~s~~~-~~l~s~~~dg~i~iw~~~~-------------------~~~~~~~~~~~---~~~~~~~~~~~~~~~~  392 (408)
T 4a11_B          336 TVDCCVFQSNF-QELYSGSRDCNILAWVPSL-------------------YEPVPDDDETT---TKSQLNPAFEDAWSSS  392 (408)
T ss_dssp             CEEEEEEETTT-TEEEEEETTSCEEEEEECC-------------------------------------------------
T ss_pred             eEEEEEEcCCC-CEEEEECCCCeEEEEeCCC-------------------CCccCCCCceE---eccccccccceeeccc
Confidence            99999999999 9999999999999999998                   55554433322   2234444333466778


Q ss_pred             ecCCeEEEeee
Q 019059          334 SYDGRVRNHML  344 (346)
Q Consensus       334 ~~d~~v~vw~~  344 (346)
                      +.|+.+++|+.
T Consensus       393 ~~~~~~~~W~~  403 (408)
T 4a11_B          393 DEEGGTSAWSH  403 (408)
T ss_dssp             -----------
T ss_pred             CccCceeecCC
Confidence            88999999985

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-33  Score=237.85  Aligned_cols=235  Identities=9%  Similarity=-0.059  Sum_probs=179.1

Q ss_pred             EEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEE
Q 019059           69 WDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLW  148 (346)
Q Consensus        69 ~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vw  148 (346)
                      ....+.+++..++++    +.|+.|++||+.         ..+.+..+.  ...|.++.|+|+    +++++.|+.|++|
T Consensus        40 ~~~~~~~d~~~l~sg----~~Dg~v~iwd~~---------~~~~~~~~~--~~~v~~~~~~~~----~~s~s~D~~i~~w  100 (343)
T 3lrv_A           40 LNKSMYYDKWVCMCR----CEDGALHFTQLK---------DSKTITTIT--TPNPRTGGEHPA----IISRGPCNRLLLL  100 (343)
T ss_dssp             ECSSSSEEEEEEEEE----EETTEEEEEEES---------SSSCEEEEE--EECCCTTCCCCS----EEEECSTTEEEEE
T ss_pred             hhhhhcCCCCEEEEE----CCCCcEEEEECC---------CCcEEEEEe--cCCceeeeeCCc----eEEecCCCeEEEE
Confidence            334556667667664    799999999998         556666664  456788888887    7788889999999


Q ss_pred             EcCCCC-----CCceeeecccCCCceeeEEEEeCC--CCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCC
Q 019059          149 SLDCSN-----KNAQVQSKQSSGMLHYLSGGAWDP--HDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDT  218 (346)
Q Consensus       149 d~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~  218 (346)
                      +.....     ............|...|.+++|+|  +++++++++.|+.|++||+++++........+   +.+++|+|
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p  180 (343)
T 3lrv_A          101 YPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK  180 (343)
T ss_dssp             ETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT
T ss_pred             EccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC
Confidence            876321     011111112224556899999999  99999999999999999999998865543233   99999999


Q ss_pred             CCCcEEEEecCCCeEEEEEcccCCcceeeecC-CCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccC
Q 019059          219 KKKHLLVTAADESGIHLWDLRMLKAPIQELPG-HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVE  297 (346)
Q Consensus       219 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  297 (346)
                      ++. ++++|+.||.|++||+++.......+.. |..+|++++|+|++ .+|++++ |+.|++||++.             
T Consensus       181 dg~-~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g-~~l~s~~-~~~v~iwd~~~-------------  244 (343)
T 3lrv_A          181 DSL-LLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNG-YWMVVEC-DQTVVCFDLRK-------------  244 (343)
T ss_dssp             TSC-EEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTS-SEEEEEE-SSBEEEEETTS-------------
T ss_pred             CCC-EEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCC-CEEEEEe-CCeEEEEEcCC-------------
Confidence            998 9999999999999999985433377887 99999999999999 9999999 45999999998             


Q ss_pred             Ccccccccccccccc---ccceee--EEEeCCCCCcEEEEeec-CCeEEEeeec
Q 019059          298 SPNQRANSLLNSYSD---YEDSVY--GLAWSSREPWIFASLSY-DGRVRNHMLE  345 (346)
Q Consensus       298 ~~~~~~~~~~~~~~~---~~~~v~--~~~~~~~~~~~l~s~~~-d~~v~vw~~~  345 (346)
                            .+.+..+..   |...+.  +++|+|+++ +|++++. |+.+++|+++
T Consensus       245 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~l~~~s~~d~~i~v~~~~  291 (343)
T 3lrv_A          245 ------DVGTLAYPTYTIPEFKTGTVTYDIDDSGK-NMIAYSNESNSLTIYKFD  291 (343)
T ss_dssp             ------STTCBSSCCCBC-----CCEEEEECTTSS-EEEEEETTTTEEEEEEEC
T ss_pred             ------CCcceeecccccccccccceEEEECCCCC-EEEEecCCCCcEEEEEEc
Confidence                  444444332   434444  699999997 8888887 9999999875

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=7.3e-32  Score=236.27  Aligned_cols=278  Identities=12%  Similarity=0.086  Sum_probs=213.8

Q ss_pred             ccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEe--eeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecC
Q 019059           22 VKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICE--GLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIP   99 (346)
Q Consensus        22 ~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~   99 (346)
                      +.++++ .+++++.   ..++.+.+|++..........  .+.+|.+.|.+++|+|++..++++    +.|+.|++||++
T Consensus       128 ~~~s~~-~~~~~~~---~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~----~~d~~v~~~d~~  199 (433)
T 3bws_A          128 VRFIDN-TRLAIPL---LEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQ----MQANAVHVFDLK  199 (433)
T ss_dssp             CEESSS-SEEEEEB---TTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEE----GGGTEEEEEETT
T ss_pred             EEEeCC-CeEEEEe---CCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEE----CCCCEEEEEECC
Confidence            445553 3444332   345779999877643211111  345788999999999988776664    688999999998


Q ss_pred             cccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCC
Q 019059          100 ELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPH  179 (346)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  179 (346)
                               ..+.+..+..|...+.+++|+|+++.++++++.++.|++||+.+++....+.      ....+.+++|+|+
T Consensus       200 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~------~~~~~~~~~~~~~  264 (433)
T 3bws_A          200 ---------TLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD------KIGLPRGLLLSKD  264 (433)
T ss_dssp             ---------TCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECC------CCSEEEEEEECTT
T ss_pred             ---------CceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEec------CCCCceEEEEcCC
Confidence                     6677778888999999999999999644555579999999998654322211      1236899999999


Q ss_pred             CCcEEEEe--------cCCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecC
Q 019059          180 DVNAVAAT--------CESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG  250 (346)
Q Consensus       180 ~~~l~~~~--------~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  250 (346)
                      ++.+++++        .|+.|++||+++++....+.... +.+++|+|+++.++++++.++.|++||+++ .+.+..+. 
T Consensus       265 g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~-~~~~~~~~-  342 (433)
T 3bws_A          265 GKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKE-KKVQKSIP-  342 (433)
T ss_dssp             SSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTT-TEEEEEEE-
T ss_pred             CCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCC-CcEEEEec-
Confidence            99999888        47899999999888766664333 899999999986778889999999999986 54566665 


Q ss_pred             CCcceEEEEeCCCCCcEEEEecC---------------CCeEEEEecCCCCCCCCCcccccCCccccccccccccccccc
Q 019059          251 HTHWTWAVCCNPEYDGFILSAGT---------------DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYED  315 (346)
Q Consensus       251 ~~~~v~~v~~~~~~~~~l~s~~~---------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (346)
                      +...+.+++|+|++ .+|++++.               ||.|++||+.+                   ++.+..+..+ .
T Consensus       343 ~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~-------------------~~~~~~~~~~-~  401 (433)
T 3bws_A          343 VFDKPNTIALSPDG-KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT-------------------DTVKEFWEAG-N  401 (433)
T ss_dssp             CSSSEEEEEECTTS-SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT-------------------TEEEEEEECS-S
T ss_pred             CCCCCCeEEEcCCC-CEEEEEecCCCccccccccccccceEEEEEECCC-------------------CcEEEEecCC-C
Confidence            67889999999999 77777765               57999999988                   6777766654 4


Q ss_pred             eeeEEEeCCCCCcEEEEee-cCCeEEEeeecC
Q 019059          316 SVYGLAWSSREPWIFASLS-YDGRVRNHMLEK  346 (346)
Q Consensus       316 ~v~~~~~~~~~~~~l~s~~-~d~~v~vw~~~~  346 (346)
                      .+.+++|+|+++ .|++++ .|+.|++|++++
T Consensus       402 ~~~~~~~s~dg~-~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          402 QPTGLDVSPDNR-YLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             SEEEEEECTTSC-EEEEEETTTTEEEEEEETT
T ss_pred             CCceEEEcCCCC-EEEEEECCCCeEEEEEecC
Confidence            589999999998 555555 599999999874

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=2.4e-31  Score=233.86  Aligned_cols=257  Identities=18%  Similarity=0.347  Sum_probs=213.9

Q ss_pred             CcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCC
Q 019059           27 DHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLN  106 (346)
Q Consensus        27 ~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~  106 (346)
                      ++..++.|.    .++.+.+|++....   ....+.+|.+.|.+++|+  +..++++    +.|+.|++||+.       
T Consensus       128 ~g~~l~sg~----~dg~i~vwd~~~~~---~~~~~~~h~~~v~~~~~~--~~~l~s~----~~dg~i~vwd~~-------  187 (445)
T 2ovr_B          128 CGNRIVSGS----DDNTLKVWSAVTGK---CLRTLVGHTGGVWSSQMR--DNIIISG----STDRTLKVWNAE-------  187 (445)
T ss_dssp             ETTEEEEEE----TTSCEEEEETTTCC---EEEECCCCSSCEEEEEEE--TTEEEEE----ETTSCEEEEETT-------
T ss_pred             cCCEEEEEE----CCCcEEEEECCCCc---EEEEEcCCCCCEEEEEec--CCEEEEE----eCCCeEEEEECC-------
Confidence            355666663    67899999987643   345677899999999998  4456654    689999999998       


Q ss_pred             CccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEE
Q 019059          107 SPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAA  186 (346)
Q Consensus       107 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  186 (346)
                        ..+.+..+..|...|.+++|++  . .+++++.|+.|++||+.+++....+     .+|...+.+++|  ++..++++
T Consensus       188 --~~~~~~~~~~h~~~v~~~~~~~--~-~l~s~s~dg~i~~wd~~~~~~~~~~-----~~~~~~v~~~~~--~~~~l~~~  255 (445)
T 2ovr_B          188 --TGECIHTLYGHTSTVRCMHLHE--K-RVVSGSRDATLRVWDIETGQCLHVL-----MGHVAAVRCVQY--DGRRVVSG  255 (445)
T ss_dssp             --TTEEEEEECCCSSCEEEEEEET--T-EEEEEETTSEEEEEESSSCCEEEEE-----ECCSSCEEEEEE--CSSCEEEE
T ss_pred             --cCcEEEEECCCCCcEEEEEecC--C-EEEEEeCCCEEEEEECCCCcEEEEE-----cCCcccEEEEEE--CCCEEEEE
Confidence              6788889999999999999963  3 3778889999999999876543332     246668999999  67899999


Q ss_pred             ecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCC
Q 019059          187 TCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPE  263 (346)
Q Consensus       187 ~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~  263 (346)
                      +.|+.|++||+++++.+..+. +|   +.+++|  ++. .+++++.|+.|++||+++ ..++..+.+|...+.++.++  
T Consensus       256 ~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~--~~~-~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~--  328 (445)
T 2ovr_B          256 AYDFMVKVWDPETETCLHTLQ-GHTNRVYSLQF--DGI-HVVSGSLDTSIRVWDVET-GNCIHTLTGHQSLTSGMELK--  328 (445)
T ss_dssp             ETTSCEEEEEGGGTEEEEEEC-CCSSCEEEEEE--CSS-EEEEEETTSCEEEEETTT-CCEEEEECCCCSCEEEEEEE--
T ss_pred             cCCCEEEEEECCCCcEeEEec-CCCCceEEEEE--CCC-EEEEEeCCCeEEEEECCC-CCEEEEEcCCcccEEEEEEe--
Confidence            999999999999998887776 44   999999  565 899999999999999997 55788899999999988875  


Q ss_pred             CCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccccc---ccceeeEEEeCCCCCcEEEEeecCCeEE
Q 019059          264 YDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD---YEDSVYGLAWSSREPWIFASLSYDGRVR  340 (346)
Q Consensus       264 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~s~~~d~~v~  340 (346)
                      + .+|++++.||.|++||+++                   ++++..+..   |...|++++|++  + +|++++.||.|+
T Consensus       329 ~-~~l~~~~~dg~i~vwd~~~-------------------~~~~~~~~~~~~~~~~v~~~~~~~--~-~l~s~~~dg~v~  385 (445)
T 2ovr_B          329 D-NILVSGNADSTVKIWDIKT-------------------GQCLQTLQGPNKHQSAVTCLQFNK--N-FVITSSDDGTVK  385 (445)
T ss_dssp             T-TEEEEEETTSCEEEEETTT-------------------CCEEEEECSTTSCSSCEEEEEECS--S-EEEEEETTSEEE
T ss_pred             C-CEEEEEeCCCeEEEEECCC-------------------CcEEEEEccCCCCCCCEEEEEECC--C-EEEEEeCCCeEE
Confidence            4 7899999999999999998                   777777765   888999999974  4 899999999999


Q ss_pred             Eeeec
Q 019059          341 NHMLE  345 (346)
Q Consensus       341 vw~~~  345 (346)
                      +|++.
T Consensus       386 iwd~~  390 (445)
T 2ovr_B          386 LWDLK  390 (445)
T ss_dssp             EEETT
T ss_pred             EEECC
Confidence            99975

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.5e-32  Score=232.54  Aligned_cols=252  Identities=15%  Similarity=0.283  Sum_probs=201.6

Q ss_pred             ecccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCC--CCceEEEEeec
Q 019059           10 YGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPF--DQRIFSTVFST   87 (346)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~~~~~   87 (346)
                      ..++.+...|..+.+++++..+++|.    .++.|.+|++..... .....+.+|.+.|.+++|+|+  +..|+++    
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~----~dg~i~iw~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~----   75 (379)
T 3jrp_A            5 VIANAHNELIHDAVLDYYGKRLATCS----SDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGTILASC----   75 (379)
T ss_dssp             CCEEECCCCEEEEEECSSSSEEEEEE----TTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCSEEEEE----
T ss_pred             EEecCCcccEEEEEEcCCCCEEEEEE----CCCcEEEEecCCCcc-eeeeEecCCCCcEEEEEeCCCCCCCEEEEe----
Confidence            34455667788888999999998874    578999999975432 334667789999999999987  7777775    


Q ss_pred             CCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecC--CCCcEEEEecCCeEEEEEcCCCCCCceeeecccC
Q 019059           88 GESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSS--GRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSS  165 (346)
Q Consensus        88 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~  165 (346)
                      +.|+.|++||+..       .....+..+..|...|.+++|+|+  +. ++++++.|+.|++||+.+.........   .
T Consensus        76 ~~dg~v~iwd~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~---~  144 (379)
T 3jrp_A           76 SYDGKVLIWKEEN-------GRWSQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIII---D  144 (379)
T ss_dssp             ETTSCEEEEEEET-------TEEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCTTSCCCEEEE---E
T ss_pred             ccCCEEEEEEcCC-------CceeEeeeecCCCcceEEEEeCCCCCCC-EEEEecCCCcEEEEecCCCCceeeEEe---c
Confidence            6899999999982       122377778889999999999999  66 477778899999999987654333332   2


Q ss_pred             CCceeeEEEEeCC-------------CCCcEEEEecCCeEEEEEccCCCccc----eeeccc---eeEEEeCCC---CCc
Q 019059          166 GMLHYLSGGAWDP-------------HDVNAVAATCESSVQFWDLRSMGKTN----SIEHAH---VRNVDYDTK---KKH  222 (346)
Q Consensus       166 ~~~~~v~~~~~~~-------------~~~~l~~~~~d~~i~i~d~~~~~~~~----~~~~~~---v~~~~~~~~---~~~  222 (346)
                      .|...+.+++|+|             ++..+++++.|+.|++||++++....    .+. +|   |.+++|+|+   +. 
T Consensus       145 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~~~-  222 (379)
T 3jrp_A          145 AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWSPTVLLRS-  222 (379)
T ss_dssp             CCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSCEEEEEECCCCSSSE-
T ss_pred             CCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEe-cccCcEeEEEECCCCCCCC-
Confidence            3566899999999             68999999999999999999876432    222 34   999999999   66 


Q ss_pred             EEEEecCCCeEEEEEcccCCc----ceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          223 LLVTAADESGIHLWDLRMLKA----PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       223 ~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      +|++++.||.|++||++....    .+.....|...|.+++|+|++ .+|++++.||.|++|++..
T Consensus       223 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          223 YLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG-NVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             EEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSS-CCEEEEESSSSEEEEEEEE
T ss_pred             eEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCC-CEEEEecCCCcEEEEeCCC
Confidence            899999999999999987432    222233488899999999999 9999999999999999984

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-32  Score=240.14  Aligned_cols=263  Identities=9%  Similarity=0.034  Sum_probs=197.9

Q ss_pred             eEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEE
Q 019059           17 RCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIW   96 (346)
Q Consensus        17 ~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw   96 (346)
                      .++.++.+++++..++.+    +.+..+.  +  ...    ...+.+|+..|++++|+|+|           .++.+.+|
T Consensus        16 ~~v~sv~~SpDG~~iASa----s~D~TV~--d--~~~----~~~l~gh~~~v~~V~FsPdg-----------~~~~~~~~   72 (588)
T 2j04_A           16 DWKNNLTWARDGTLYLTT----FPDISIG--Q--PKY----AKDINCNSKNLFHVKEFPLE-----------FENKLDFE   72 (588)
T ss_dssp             SSSCCEEECTTSCEEEEC----SSSEEEE--E--ECC----CSCCSSBGGGTEEEEEECCC-----------CCCTTTTS
T ss_pred             ccEEEEEECCCCCEEEEE----cCCceee--c--ccc----cceecCCCccEEEEEECCCC-----------CcceEEEE
Confidence            467788899999999886    3566666  3  111    13446899999999999987           34555566


Q ss_pred             ecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEe
Q 019059           97 QIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAW  176 (346)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~  176 (346)
                      +.+          ...+..+ .|...|.+++|+|+|+. +++++.||.|++||..+   ..........-....+.+++|
T Consensus        73 ~~~----------~~~~~~~-~~~~~V~~vawSPdG~~-LAs~s~dg~V~iwd~~~---~l~~l~~~~~~~~~sv~svaf  137 (588)
T 2j04_A           73 LAQ----------QNGLLNS-QPVCYPRVCKPSPIDDW-MAVLSNNGNVSVFKDNK---MLTNLDSKGNLSSRTYHCFEW  137 (588)
T ss_dssp             CCC----------SSCSSTT-SCSCCEEEEEECSSSSC-EEEEETTSCEEEEETTE---EEEECCCSSCSTTTCEEEEEE
T ss_pred             eCC----------CceEeec-CCCCcEEEEEECCCCCE-EEEEeCCCcEEEEeCCc---eeeeccCCCccccccEEEEEE
Confidence            543          2233333 45788999999999995 77778899999999543   111111110000225999999


Q ss_pred             CCCCCcEEEEecCCeEEEEEccCCCc-------cceee---ccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCc
Q 019059          177 DPHDVNAVAATCESSVQFWDLRSMGK-------TNSIE---HAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA  243 (346)
Q Consensus       177 ~~~~~~l~~~~~d~~i~i~d~~~~~~-------~~~~~---~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  243 (346)
                      +|+|+.|++++.||+|++||+.++..       +.++.   .+|   |.+++|+|++   +++++.|+.|++||+.....
T Consensus       138 SPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~  214 (588)
T 2j04_A          138 NPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSH  214 (588)
T ss_dssp             CSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSS
T ss_pred             cCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCcc
Confidence            99999999999999999999998753       34442   345   9999999998   67788899999999986331


Q ss_pred             --ceeee-cCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEE
Q 019059          244 --PIQEL-PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGL  320 (346)
Q Consensus       244 --~~~~~-~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  320 (346)
                        ..+++ .+|...|.+++|+  + ..||+++ +++|++||+..                   ++......+|...|.++
T Consensus       215 ~~~~~tL~~~h~~~V~svaFs--g-~~LASa~-~~tIkLWd~~~-------------------~~~~~~~~gh~~~V~~v  271 (588)
T 2j04_A          215 QPVSRMIQNASRRKITDLKIV--D-YKVVLTC-PGYVHKIDLKN-------------------YSISSLKTGSLENFHII  271 (588)
T ss_dssp             CCCEEEEECCCSSCCCCEEEE--T-TEEEEEC-SSEEEEEETTT-------------------TEEEEEECSCCSCCCEE
T ss_pred             ccceeeecccccCcEEEEEEE--C-CEEEEEe-CCeEEEEECCC-------------------CeEEEEEcCCCceEEEE
Confidence              23456 4788999999999  6 7888887 69999999997                   55533333799999999


Q ss_pred             Ee--CCCCCcEEEEeecCCeEEEeeec
Q 019059          321 AW--SSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       321 ~~--~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      +|  +|++. .++++++||+ ++|.++
T Consensus       272 a~~~s~d~~-~La~a~edG~-klw~~d  296 (588)
T 2j04_A          272 PLNHEKEST-ILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             EETTCSSCE-EEEECSSCEE-EEEESS
T ss_pred             EeeeCCCCC-EEEEEcCCCC-EEEeec
Confidence            99  99996 8999999999 999864

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.8e-32  Score=256.22  Aligned_cols=242  Identities=10%  Similarity=0.068  Sum_probs=190.7

Q ss_pred             eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEE
Q 019059           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV  138 (346)
Q Consensus        59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  138 (346)
                      ....+|.+.|++++|+|+++.|+++    +.|+.|+||+..         ..+....+ .|...|.+++|+| ++ .+++
T Consensus        11 ~~~~gh~~~V~~lafspdg~~lAsg----s~Dg~I~lw~~~---------~~~~~~~~-~~~~~V~~l~fsp-g~-~L~S   74 (902)
T 2oaj_A           11 TNKYGMSSKPIAAAFDFTQNLLAIA----TVTGEVHIYGQQ---------QVEVVIKL-EDRSAIKEMRFVK-GI-YLVV   74 (902)
T ss_dssp             EEEEECSSCEEEEEEETTTTEEEEE----ETTSEEEEECST---------TCEEEEEC-SSCCCEEEEEEET-TT-EEEE
T ss_pred             ccccCCCCCcEEEEECCCCCEEEEE----eCCCEEEEEeCC---------CcEEEEEc-CCCCCEEEEEEcC-CC-EEEE
Confidence            4456899999999999999888875    689999999987         44554444 5788999999999 76 4777


Q ss_pred             EecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccc----------eeec
Q 019059          139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN----------SIEH  208 (346)
Q Consensus       139 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~----------~~~~  208 (346)
                      ++.|+.|++||+.+++....+.      +...|.+++|+|+++++++++.||.|++||+++++...          ....
T Consensus        75 ~s~D~~v~lWd~~~~~~~~~~~------~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~  148 (902)
T 2oaj_A           75 INAKDTVYVLSLYSQKVLTTVF------VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPA  148 (902)
T ss_dssp             EETTCEEEEEETTTCSEEEEEE------CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSS
T ss_pred             EECcCeEEEEECCCCcEEEEEc------CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccc
Confidence            7899999999998765433332      33489999999999999999999999999999876431          0112


Q ss_pred             cc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCC------------------CcceEEEEeCCCCCcE
Q 019059          209 AH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGH------------------THWTWAVCCNPEYDGF  267 (346)
Q Consensus       209 ~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------------------~~~v~~v~~~~~~~~~  267 (346)
                      +|   |.+++|+|++...+++|+.|+.| +||++. ..++..+..|                  ...|++++|+|+| .+
T Consensus       149 ~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg-~~  225 (902)
T 2oaj_A          149 ARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVE-NEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS-LH  225 (902)
T ss_dssp             SCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTT-TEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS-SE
T ss_pred             cCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCC-CceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCC-CE
Confidence            34   99999999764489999999999 999997 5566666655                  5779999999999 99


Q ss_pred             EEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccc--c---c-------------cccceeeEEEeC----CC
Q 019059          268 ILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNS--Y---S-------------DYEDSVYGLAWS----SR  325 (346)
Q Consensus       268 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~-------------~~~~~v~~~~~~----~~  325 (346)
                      |++++.|+.|++||+++                   ++++..  +   .             .|..+|++++|+    |+
T Consensus       226 lasgs~Dg~i~lWd~~~-------------------g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd  286 (902)
T 2oaj_A          226 IITIHEDNSLVFWDANS-------------------GHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPE  286 (902)
T ss_dssp             EEEEETTCCEEEEETTT-------------------CCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTT
T ss_pred             EEEEECCCeEEEEECCC-------------------CcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCC
Confidence            99999999999999987                   333221  1   1             245579999995    55


Q ss_pred             CCcEEEEeecCC-----eEEEeee
Q 019059          326 EPWIFASLSYDG-----RVRNHML  344 (346)
Q Consensus       326 ~~~~l~s~~~d~-----~v~vw~~  344 (346)
                      +..+|++++.|.     .+++|++
T Consensus       287 ~~~ll~sg~~~~~~~~~~v~~~~~  310 (902)
T 2oaj_A          287 YTSLLISHKSISRGDNQSLTMIDL  310 (902)
T ss_dssp             EEEEEEEEECSTTSSCCCEEEEEE
T ss_pred             CCEEEEeCCCCCCCCCceEEEEec
Confidence            445788887763     7888874

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=7.9e-31  Score=223.52  Aligned_cols=291  Identities=10%  Similarity=0.079  Sum_probs=201.9

Q ss_pred             cceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcce
Q 019059           13 KYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYG   92 (346)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~   92 (346)
                      +.+...+.++.+++++..+++|.     ++.+.+|++.+..  ....   .+...+..+++.++++.++.+   ++.|+.
T Consensus        16 ~~h~~~V~~v~fs~dg~~la~g~-----~~~~~iw~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~---~~~d~~   82 (355)
T 3vu4_A           16 NHVSNPVTDYEFNQDQSCLILST-----LKSFEIYNVHPVA--HIMS---QEMRHLSKVRMLHRTNYVAFV---TGVKEV   82 (355)
T ss_dssp             ---CCCCCEEEECTTSSEEEEEC-----SSEEEEEEETTEE--EEEE---EECSCCCEEEECTTSSEEEEE---CSSTTE
T ss_pred             ccCCCceEEEEECCCCCEEEEEc-----CCEEEEEecCCcc--eeee---eecCCeEEEEEcCCCCEEEEE---ECCccE
Confidence            34456778888999999998874     2357788876532  1111   222357888899888877665   577889


Q ss_pred             EEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCC-CCCceeeecccCCCceee
Q 019059           93 AAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCS-NKNAQVQSKQSSGMLHYL  171 (346)
Q Consensus        93 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~v  171 (346)
                      |++||+.         +.+.+..+. +...|.+++|+++.   ++++ .++.|++||+.+. +....+..        ..
T Consensus        83 v~iWd~~---------~~~~~~~~~-~~~~v~~v~~~~~~---~~~~-~~~~i~i~d~~~~~~~~~~~~~--------~~  140 (355)
T 3vu4_A           83 VHIWDDV---------KKQDVSRIK-VDAPVKDLFLSREF---IVVS-YGDVISVFKFGNPWKRITDDIR--------FG  140 (355)
T ss_dssp             EEEEETT---------TTEEEEEEE-CSSCEEEEEECSSE---EEEE-ETTEEEEEESSTTCCBSSCCEE--------EE
T ss_pred             EEEEECC---------CCcEEEEEE-CCCceEEEEEcCCE---EEEE-EcCEEEEEECCCCceeeEEecc--------CC
Confidence            9999998         677777775 67799999998763   3333 4889999999876 43333222        23


Q ss_pred             EEEEeCCCCCcEEEE--ecCCeEEEEEccCCC---------------c-cceeeccc---eeEEEeCCCCCcEEEEecCC
Q 019059          172 SGGAWDPHDVNAVAA--TCESSVQFWDLRSMG---------------K-TNSIEHAH---VRNVDYDTKKKHLLVTAADE  230 (346)
Q Consensus       172 ~~~~~~~~~~~l~~~--~~d~~i~i~d~~~~~---------------~-~~~~~~~~---v~~~~~~~~~~~~l~~~~~d  230 (346)
                      ..+++++  ..++++  +.+|.|++||+++++               + ...+. +|   |.+++|+|++. +|++++.|
T Consensus       141 ~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~-~h~~~v~~~~~s~~g~-~l~s~s~d  216 (355)
T 3vu4_A          141 GVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK-AHTNPIKMVRLNRKSD-MVATCSQD  216 (355)
T ss_dssp             EEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEEC-CCSSCEEEEEECTTSS-EEEEEETT
T ss_pred             ceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEE-ccCCceEEEEECCCCC-EEEEEeCC
Confidence            3445565  556664  579999999999865               1 34444 55   99999999998 99999999


Q ss_pred             Ce-EEEEEcccCCcceeeec-C-CCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccc---ccc
Q 019059          231 SG-IHLWDLRMLKAPIQELP-G-HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQ---RAN  304 (346)
Q Consensus       231 g~-i~i~d~~~~~~~~~~~~-~-~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~  304 (346)
                      ++ |++||+++ ..++..+. + |...|.+++|+|++ .+|++++.|++|++||++.........-.....+..   ...
T Consensus       217 ~~~v~iwd~~~-~~~~~~~~~g~h~~~v~~~~~s~~~-~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (355)
T 3vu4_A          217 GTIIRVFKTED-GVLVREFRRGLDRADVVDMKWSTDG-SKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWS  294 (355)
T ss_dssp             CSEEEEEETTT-CCEEEEEECTTCCSCEEEEEECTTS-CEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSC
T ss_pred             CCEEEEEECCC-CcEEEEEEcCCCCCcEEEEEECCCC-CEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccc
Confidence            98 99999997 55788887 5 99999999999999 999999999999999998632211100000000000   000


Q ss_pred             cccccc-ccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          305 SLLNSY-SDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       305 ~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      .....+ ..+......++|+|+++ .+++++.||.+++|++.
T Consensus       295 ~~~~~~~~~~~~~~~~~a~~~d~~-~l~~~~~dg~~~~~~~~  335 (355)
T 3vu4_A          295 LCNFKLSVDKHVRGCKIAWISESS-LVVVWPHTRMIETFKVV  335 (355)
T ss_dssp             SEEEECCCCTTCCCCEEEESSSSE-EEEEETTTTEEEEEEEE
T ss_pred             eeEEEeccCCCCCceEEEEeCCCC-EEEEEeCCCeEEEEEEE
Confidence            000001 11222346799999997 89999999999999874

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=6.1e-32  Score=236.48  Aligned_cols=260  Identities=18%  Similarity=0.271  Sum_probs=196.1

Q ss_pred             cceEEeeecCCC----------CceEEEEeecCCcceEEEEecCcccC-----------C--------CCCccceeeeee
Q 019059           66 NEIWDLSSCPFD----------QRIFSTVFSTGESYGAAIWQIPELYG-----------Q--------LNSPQLERIAAL  116 (346)
Q Consensus        66 ~~v~~~~~~~~~----------~~l~~~~~~~~~d~~i~vw~~~~~~~-----------~--------~~~~~~~~~~~~  116 (346)
                      -+..++.|.|+.          .+++++.++.+....|.+.++..+..           +        ...+..+ ....
T Consensus        46 wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~  124 (430)
T 2xyi_A           46 WPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIE-IEIK  124 (430)
T ss_dssp             SCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEE-EEEE
T ss_pred             CCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceE-EEEE
Confidence            456778888864          34666655555667788886541100           0        0111122 2344


Q ss_pred             eccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCc-----eeeecccCCCceeeEEEEeCCCCC-cEEEEecCC
Q 019059          117 DAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNA-----QVQSKQSSGMLHYLSGGAWDPHDV-NAVAATCES  190 (346)
Q Consensus       117 ~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~  190 (346)
                      ..|.+.|++++|+|++..++++++.+|.|++|++.+.....     ........+|...+.+++|+|++. .|++++.||
T Consensus       125 ~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg  204 (430)
T 2xyi_A          125 INHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDH  204 (430)
T ss_dssp             EEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTS
T ss_pred             EcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCC
Confidence            58999999999999855567777889999999998621000     000111234667899999999988 888899999


Q ss_pred             eEEEEEccCCCcc-------ceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCC--cceeeecCCCcceEEE
Q 019059          191 SVQFWDLRSMGKT-------NSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK--APIQELPGHTHWTWAV  258 (346)
Q Consensus       191 ~i~i~d~~~~~~~-------~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~v  258 (346)
                      .|++||+..+...       ..+. +|   |.+++|+|++..+|++++.|+.|++||++...  .++..+..|...|+++
T Consensus       205 ~i~vwd~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i  283 (430)
T 2xyi_A          205 TICLWDINATPKEHRVIDAKNIFT-GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCL  283 (430)
T ss_dssp             CEEEEETTSCCBGGGEEECSEEEC-CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEE
T ss_pred             eEEEEeCCCCCCCCceeccceeec-CCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEE
Confidence            9999999985431       2222 44   99999999655599999999999999999742  5677788999999999


Q ss_pred             EeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCe
Q 019059          259 CCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGR  338 (346)
Q Consensus       259 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~  338 (346)
                      +|+|+++.+|++|+.||.|++||++.                  ...++..+..|...|++++|+|+++.+|++++.|+.
T Consensus       284 ~~~p~~~~~l~tg~~dg~v~vwd~~~------------------~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~  345 (430)
T 2xyi_A          284 SFNPYSEFILATGSADKTVALWDLRN------------------LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR  345 (430)
T ss_dssp             EECSSCTTEEEEEETTSEEEEEETTC------------------TTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSC
T ss_pred             EeCCCCCCEEEEEeCCCeEEEEeCCC------------------CCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCc
Confidence            99999955899999999999999997                  245677888899999999999999778999999999


Q ss_pred             EEEeeec
Q 019059          339 VRNHMLE  345 (346)
Q Consensus       339 v~vw~~~  345 (346)
                      |++|++.
T Consensus       346 i~iwd~~  352 (430)
T 2xyi_A          346 LHVWDLS  352 (430)
T ss_dssp             CEEEEGG
T ss_pred             EEEEeCC
Confidence            9999985

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=7.2e-31  Score=215.15  Aligned_cols=266  Identities=9%  Similarity=0.050  Sum_probs=188.4

Q ss_pred             CCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCcc-ceeeeeeec
Q 019059           40 EENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQ-LERIAALDA  118 (346)
Q Consensus        40 ~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~-~~~~~~~~~  118 (346)
                      .+..+.+|+..+............|+.+|..+.+.|+...|++++...=+.+.|+.--+..     +... .+.+. ..+
T Consensus        61 ~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~sp-----d~~~~~~~l~-s~g  134 (356)
T 2w18_A           61 CEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSS-----DDESEKQVLL-KSG  134 (356)
T ss_dssp             ESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC-----------CCEEEE-EEE
T ss_pred             ccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECC-----CccccccEEE-eCC
Confidence            3567889988886555666788899999999999999988888763222222333222220     0001 22222 234


Q ss_pred             cCCceEEEEeecCCCCcEEEEe---cCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCC---CCCcEEEEecCCeE
Q 019059          119 HVGKINCVLWWSSGRHDKLVSI---DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDP---HDVNAVAATCESSV  192 (346)
Q Consensus       119 ~~~~i~~~~~~~~~~~~~~~~~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i  192 (346)
                      |...|..+   ++++  ++.++   .|+.|++|++....+.....    .+|...+..++|+|   ++..|++++.|++|
T Consensus       135 ~~~~v~~l---~~g~--lv~ss~~g~d~~V~~~~~s~dG~~~~s~----~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TI  205 (356)
T 2w18_A          135 NIKAVLGL---TKRR--LVSSSGTLSDQQVEVMTFAEDGGGKENQ----FLMPPEETILTFAEVQGMQEALLGTTIMNNI  205 (356)
T ss_dssp             EEEEEEEE---TTTE--EEEEESSSTTCEEEEEEECTTSCEEEEE----EECCCSSCEEEEEEEETSTTEEEEEETTSEE
T ss_pred             CeEEEEec---CCCc--EEEecccCCCCcEEEEEECCCCceeeee----ccCCCceeeEEeeccCCCCceEEEecCCCcE
Confidence            55555554   5555  44443   59999999996533222211    13555788888988   77899999999999


Q ss_pred             EEEEccCCCccceeeccc-----eeEEEeCCCCCcEE------------EEecCCCeEEEEEcccCCcceeee-----cC
Q 019059          193 QFWDLRSMGKTNSIEHAH-----VRNVDYDTKKKHLL------------VTAADESGIHLWDLRMLKAPIQEL-----PG  250 (346)
Q Consensus       193 ~i~d~~~~~~~~~~~~~~-----v~~~~~~~~~~~~l------------~~~~~dg~i~i~d~~~~~~~~~~~-----~~  250 (346)
                      ++||++++++++++...+     +.+++|+|++. ++            ++|+.|++|++||..+ +..+..+     .+
T Consensus       206 kIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~-~lvs~s~~~~~w~laSGs~D~tIklWd~~t-gk~l~v~~~~~p~G  283 (356)
T 2w18_A          206 VIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGL-LFIVLSHPCAKESESLRSPVFQLIVINPKT-TLSVGVMLYCLPPG  283 (356)
T ss_dssp             EEEETTTCCEEEEEECCC---CCCEEEEEEETTE-EEEEEC------------CCEEEEEEETTT-TEEEEEEEECCCTT
T ss_pred             EEEECCCCcEEEEEcCCCcceeeeEEEEECCCCC-EEEEeccCCCcceeeccCCCcEEEEEECCC-CEEEEEEEeeccCC
Confidence            999999999999887332     77889999997 44            5688899999999986 4455443     35


Q ss_pred             CCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceee-EEEeCCCCCcE
Q 019059          251 HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVY-GLAWSSREPWI  329 (346)
Q Consensus       251 ~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~  329 (346)
                      |...+.+..++  + .++++++.|++|+|||+.+                   ++++.++.+|...+. .++|+|+|+ +
T Consensus       284 h~~~~lsg~~s--g-~~lASgS~DgTIkIWDl~t-------------------Gk~l~tL~gH~~~vvs~vafSPDG~-~  340 (356)
T 2w18_A          284 QAGRFLEGDVK--D-HCAAAILTSGTIAIWDLLL-------------------GQCTALLPPVSDQHWSFVKWSGTDS-H  340 (356)
T ss_dssp             CCCCEEEEEEE--T-TEEEEEETTSCEEEEETTT-------------------CSEEEEECCC--CCCCEEEECSSSS-E
T ss_pred             CcceeEccccC--C-CEEEEEcCCCcEEEEECCC-------------------CcEEEEecCCCCCeEEEEEECCCCC-E
Confidence            66555544444  5 7899999999999999999                   899999999987655 589999997 9


Q ss_pred             EEEeecCCeEEEeeec
Q 019059          330 FASLSYDGRVRNHMLE  345 (346)
Q Consensus       330 l~s~~~d~~v~vw~~~  345 (346)
                      |++|+.|++|+|||+.
T Consensus       341 LaSGS~D~TIklWd~~  356 (356)
T 2w18_A          341 LLAGQKDGNIFVYHYS  356 (356)
T ss_dssp             EEEECTTSCEEEEEEC
T ss_pred             EEEEECCCcEEEecCC
Confidence            9999999999999973

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=8.6e-32  Score=230.35  Aligned_cols=251  Identities=16%  Similarity=0.208  Sum_probs=193.7

Q ss_pred             EEeeeeccccceEEeeecCCC---CceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCC
Q 019059           57 ICEGLFSHPNEIWDLSSCPFD---QRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGR  133 (346)
Q Consensus        57 ~~~~~~~h~~~v~~~~~~~~~---~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  133 (346)
                      ....+.+|.+.|++++|+|++   +.|+++    +.|+.|++|++..       ........+..|...|.+++|+|+++
T Consensus        31 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~----~~dg~i~iw~~~~-------~~~~~~~~~~~h~~~v~~~~~~~~~~   99 (368)
T 3mmy_A           31 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAG----SWANDVRCWEVQD-------SGQTIPKAQQMHTGPVLDVCWSDDGS   99 (368)
T ss_dssp             CEECSSCCSSCEEEEEECCTTSSSEEEEEE----ETTSEEEEEEECT-------TSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred             eeEeccCCCCceEEEEEcCCCCCceEEEEE----CCCCcEEEEEcCC-------CCceeEEEeccccCCEEEEEECcCCC
Confidence            345677899999999999994   666664    6899999999972       11233367889999999999999998


Q ss_pred             CcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEe--CCCCCcEEEEecCCeEEEEEccCCCccceeeccc-
Q 019059          134 HDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAW--DPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-  210 (346)
Q Consensus       134 ~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-  210 (346)
                      . +++++.|+.|++||+.+++... .     ..|...+.+++|  +|++..+++++.|+.|++||+++++....+.... 
T Consensus       100 ~-l~s~~~dg~v~iwd~~~~~~~~-~-----~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  172 (368)
T 3mmy_A          100 K-VFTASCDKTAKMWDLSSNQAIQ-I-----AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPER  172 (368)
T ss_dssp             E-EEEEETTSEEEEEETTTTEEEE-E-----EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSC
T ss_pred             E-EEEEcCCCcEEEEEcCCCCcee-e-----ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCC
Confidence            4 7777889999999998764322 1     235668999999  9999999999999999999999999888887444 


Q ss_pred             eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeec-CCCcceEEEEeCCCC---CcEEEEecCCCeEEEEecCCCC
Q 019059          211 VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP-GHTHWTWAVCCNPEY---DGFILSAGTDSTVNLWLVSTSN  286 (346)
Q Consensus       211 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~v~~~~~~---~~~l~s~~~d~~i~iwd~~~~~  286 (346)
                      +.++.+.+.   .+++++.++.+++||++........+. .+...+.++.+.++.   +..+++++.|+.|++||++...
T Consensus       173 ~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~  249 (368)
T 3mmy_A          173 CYCADVIYP---MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPN  249 (368)
T ss_dssp             EEEEEEETT---EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSC
T ss_pred             ceEEEecCC---eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCC
Confidence            777777653   677788889999999987443333332 234455666655544   1239999999999999998710


Q ss_pred             CCCCCcccccCCccccccccccccccccc------------eeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          287 HDELPSESLVESPNQRANSLLNSYSDYED------------SVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                                      ....+..+.+|..            .|++++|+|+++ +|++++.|+.|++||++
T Consensus       250 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~~~dg~i~iwd~~  303 (368)
T 3mmy_A          250 ----------------PAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHG-TLATVGSDGRFSFWDKD  303 (368)
T ss_dssp             ----------------HHHHSEEEECSEEC----CCCEEECCEEEEEECTTTC-CEEEEETTSCEEEEETT
T ss_pred             ----------------ccccceeeeeeecccccccccccccceEEEEEecCCC-EEEEEccCCeEEEEECC
Confidence                            0144556666655            799999999997 89999999999999986

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.7e-31  Score=224.70  Aligned_cols=269  Identities=12%  Similarity=0.085  Sum_probs=191.7

Q ss_pred             CCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCC
Q 019059           26 TDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQL  105 (346)
Q Consensus        26 ~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~  105 (346)
                      .+...++.|    +.++.|++|++..........     ...|.++.|+|.   +++    ++.|+.|++|+........
T Consensus        46 ~d~~~l~sg----~~Dg~v~iwd~~~~~~~~~~~-----~~~v~~~~~~~~---~~s----~s~D~~i~~w~~~~~~~~~  109 (343)
T 3lrv_A           46 YDKWVCMCR----CEDGALHFTQLKDSKTITTIT-----TPNPRTGGEHPA---IIS----RGPCNRLLLLYPGNQITIL  109 (343)
T ss_dssp             EEEEEEEEE----EETTEEEEEEESSSSCEEEEE-----EECCCTTCCCCS---EEE----ECSTTEEEEEETTTEEEEE
T ss_pred             CCCCEEEEE----CCCCcEEEEECCCCcEEEEEe-----cCCceeeeeCCc---eEE----ecCCCeEEEEEccCceEEe
Confidence            355666666    468999999998764322222     467889999997   555    4899999999876211000


Q ss_pred             CCccceeeeeee-ccCCceEEEEeec--CCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCc
Q 019059          106 NSPQLERIAALD-AHVGKINCVLWWS--SGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVN  182 (346)
Q Consensus       106 ~~~~~~~~~~~~-~~~~~i~~~~~~~--~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  182 (346)
                      +....+.+..+. .|.+.|.+++|+|  +++. +++++.|+.|++||+++++.. ....   ..+...+.+++|+|++..
T Consensus       110 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~s~s~dg~i~~wd~~~~~~~-~~~~---~~~~~~i~~~~~~pdg~~  184 (343)
T 3lrv_A          110 DSKTNKVLREIEVDSANEIIYMYGHNEVNTEY-FIWADNRGTIGFQSYEDDSQY-IVHS---AKSDVEYSSGVLHKDSLL  184 (343)
T ss_dssp             ETTTCCEEEEEECCCSSCEEEEECCC---CCE-EEEEETTCCEEEEESSSSCEE-EEEC---CCSSCCCCEEEECTTSCE
T ss_pred             ecCCcceeEEeecCCCCCEEEEEcCCCCCCCE-EEEEeCCCcEEEEECCCCcEE-EEEe---cCCCCceEEEEECCCCCE
Confidence            011223233333 6678999999999  8883 677788999999999976542 2111   223447999999999999


Q ss_pred             EEEEecCCeEEEEEccCCCcc-ceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecC---CCcce
Q 019059          183 AVAATCESSVQFWDLRSMGKT-NSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG---HTHWT  255 (346)
Q Consensus       183 l~~~~~d~~i~i~d~~~~~~~-~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~v  255 (346)
                      +++++.|+.|++||+++++.. ..+..+|   |++++|+|++. +|++++. +.|++||+++.. .+..+..   |...+
T Consensus       185 lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~-~l~s~~~-~~v~iwd~~~~~-~~~~~~~~~~~~~~~  261 (343)
T 3lrv_A          185 LALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGY-WMVVECD-QTVVCFDLRKDV-GTLAYPTYTIPEFKT  261 (343)
T ss_dssp             EEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSS-EEEEEES-SBEEEEETTSST-TCBSSCCCBC-----
T ss_pred             EEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCC-EEEEEeC-CeEEEEEcCCCC-cceeecccccccccc
Confidence            999999999999999999877 5666435   99999999998 8888884 599999999743 4444332   44444


Q ss_pred             E--EEEeCCCCCcEEEEecC-CCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCC---CCCcE
Q 019059          256 W--AVCCNPEYDGFILSAGT-DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS---REPWI  329 (346)
Q Consensus       256 ~--~v~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~  329 (346)
                      .  +++|+|++ .+|++++. |+.|+||++..                   .......    .++..+.|.|   +.. .
T Consensus       262 ~~~~~~~~~~g-~~l~~~s~~d~~i~v~~~~~-------------------~~~~~~~----~~~~~~~~~~~~~~~~-~  316 (343)
T 3lrv_A          262 GTVTYDIDDSG-KNMIAYSNESNSLTIYKFDK-------------------KTKNWTK----DEESALCLQSDTADFT-D  316 (343)
T ss_dssp             CCEEEEECTTS-SEEEEEETTTTEEEEEEECT-------------------TTCSEEE----EEEEECCC----CCCC-E
T ss_pred             cceEEEECCCC-CEEEEecCCCCcEEEEEEcc-------------------cccceEe----cCceeEecCccccccc-e
Confidence            4  69999999 99999888 99999999976                   2221111    4577888888   665 7


Q ss_pred             EEEeecCCeEEEee
Q 019059          330 FASLSYDGRVRNHM  343 (346)
Q Consensus       330 l~s~~~d~~v~vw~  343 (346)
                      +++++.|+.++++-
T Consensus       317 l~~~~~d~~~~~~~  330 (343)
T 3lrv_A          317 MDVVCGDGGIAAIL  330 (343)
T ss_dssp             EEEEEETTEEEEEE
T ss_pred             eEEEecCCceEEEE
Confidence            88888888888764

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=4.4e-31  Score=231.48  Aligned_cols=230  Identities=20%  Similarity=0.332  Sum_probs=194.0

Q ss_pred             eccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEec
Q 019059           62 FSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSID  141 (346)
Q Consensus        62 ~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  141 (346)
                      .+|...|.++++  +++.++++    +.|+.|++||+.         +.+.+..+.+|...|.+++|  +++ ++++++.
T Consensus       130 ~~~~~~v~~~~~--d~~~l~~g----~~dg~i~iwd~~---------~~~~~~~~~~h~~~v~~l~~--~~~-~l~sg~~  191 (435)
T 1p22_A          130 SETSKGVYCLQY--DDQKIVSG----LRDNTIKIWDKN---------TLECKRILTGHTGSVLCLQY--DER-VIITGSS  191 (435)
T ss_dssp             CSSCCCEEEEEC--CSSEEEEE----ESSSCEEEEESS---------SCCEEEEECCCSSCEEEEEC--CSS-EEEEEET
T ss_pred             cCCCCcEEEEEE--CCCEEEEE----eCCCeEEEEeCC---------CCeEEEEEcCCCCcEEEEEE--CCC-EEEEEcC
Confidence            356678998887  57777775    689999999998         67888889999999999999  455 4777888


Q ss_pred             CCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccc--eeeccc---eeEEEe
Q 019059          142 EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN--SIEHAH---VRNVDY  216 (346)
Q Consensus       142 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--~~~~~~---v~~~~~  216 (346)
                      ||.|++||+.+++....+     .+|...+.+++|++  ..+++++.|+.|++||+++++...  ....+|   |.+++|
T Consensus       192 dg~i~vwd~~~~~~~~~~-----~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~  264 (435)
T 1p22_A          192 DSTVRVWDVNTGEMLNTL-----IHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF  264 (435)
T ss_dssp             TSCEEEEESSSCCEEEEE-----CCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE
T ss_pred             CCeEEEEECCCCcEEEEE-----cCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe
Confidence            999999999877543322     34677899999974  589999999999999999887653  222344   999999


Q ss_pred             CCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCccccc
Q 019059          217 DTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLV  296 (346)
Q Consensus       217 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  296 (346)
                        ++. .+++++.||.|++||+++ ..++..+.+|...|.++.|+  + .+|++|+.|+.|++||+++            
T Consensus       265 --~~~-~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~--~-~~l~~g~~dg~i~iwd~~~------------  325 (435)
T 1p22_A          265 --DDK-YIVSASGDRTIKVWNTST-CEFVRTLNGHKRGIACLQYR--D-RLVVSGSSDNTIRLWDIEC------------  325 (435)
T ss_dssp             --ETT-EEEEEETTSEEEEEETTT-CCEEEEEECCSSCEEEEEEE--T-TEEEEEETTSCEEEEETTT------------
T ss_pred             --CCC-EEEEEeCCCeEEEEECCc-CcEEEEEcCCCCcEEEEEeC--C-CEEEEEeCCCeEEEEECCC------------
Confidence              565 899999999999999997 56888899999999999994  4 7899999999999999998            


Q ss_pred             CCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          297 ESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                             ++++..+.+|...|.+++|  ++. +|++++.||.|++||+.
T Consensus       326 -------~~~~~~~~~h~~~v~~~~~--~~~-~l~sg~~dg~i~vwd~~  364 (435)
T 1p22_A          326 -------GACLRVLEGHEELVRCIRF--DNK-RIVSGAYDGKIKVWDLV  364 (435)
T ss_dssp             -------CCEEEEECCCSSCEEEEEC--CSS-EEEEEETTSCEEEEEHH
T ss_pred             -------CCEEEEEeCCcCcEEEEEe--cCC-EEEEEeCCCcEEEEECC
Confidence                   8889999999999999999  455 89999999999999974

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4e-31  Score=246.43  Aligned_cols=251  Identities=16%  Similarity=0.294  Sum_probs=201.1

Q ss_pred             ccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCC--CCceEEEEeecCC
Q 019059           12 LKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPF--DQRIFSTVFSTGE   89 (346)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~~~~~~~   89 (346)
                      +..+...+.++.+++++..+++|.    .++.|.+|++..... .....+.+|.+.|.+++|+|+  +..++++    +.
T Consensus         5 l~gH~~~V~~l~~s~dg~~latg~----~dg~I~vwd~~~~~~-~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~----s~   75 (753)
T 3jro_A            5 ANAHNELIHDAVLDYYGKRLATCS----SDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGTILASC----SY   75 (753)
T ss_dssp             ---CCCCEEEECCCSSSCCEEEEE----TTTEEEEEEEETTEE-EEEEEECCCSSCEEEEEECCTTSCSEEEEE----ET
T ss_pred             cccCcceeEEEEECCCCCeEEEEE----CCCcEEEEecCCCCC-ccceeccCCcCceEEEEecCCCCCCEEEEE----eC
Confidence            344566788889999999898874    578999999985432 344677899999999999987  7777775    68


Q ss_pred             cceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecC--CCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCC
Q 019059           90 SYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSS--GRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGM  167 (346)
Q Consensus        90 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~  167 (346)
                      |+.|++||+..       .....+..+..|...|.+++|+|+  +. .+++++.|+.|++||+.+.........   .+|
T Consensus        76 Dg~I~vwd~~~-------~~~~~~~~~~~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~vwdl~~~~~~~~~~~---~~~  144 (753)
T 3jro_A           76 DGKVLIWKEEN-------GRWSQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIII---DAH  144 (753)
T ss_dssp             TSCEEEEEEET-------TEEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCSSSCCCCEEE---ECC
T ss_pred             CCeEEEEECCC-------CcccccccccCCCCCeEEEEECCCCCCC-EEEEEeCCCcEEEEEeecCCCcceeEe---ecC
Confidence            99999999982       122367778889999999999999  66 477778899999999987644333332   246


Q ss_pred             ceeeEEEEeCC-------------CCCcEEEEecCCeEEEEEccCCCcc----ceeeccc---eeEEEeCCC---CCcEE
Q 019059          168 LHYLSGGAWDP-------------HDVNAVAATCESSVQFWDLRSMGKT----NSIEHAH---VRNVDYDTK---KKHLL  224 (346)
Q Consensus       168 ~~~v~~~~~~~-------------~~~~l~~~~~d~~i~i~d~~~~~~~----~~~~~~~---v~~~~~~~~---~~~~l  224 (346)
                      ...+.+++|+|             ++..+++++.||.|++||++++...    ..+. +|   |.+++|+|+   +. ++
T Consensus       145 ~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~~~-~l  222 (753)
T 3jro_A          145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWSPTVLLRS-YL  222 (753)
T ss_dssp             SSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSCEEEEEECCCCSSSE-EE
T ss_pred             CCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeec-CCCCcEEEEEeccCCCCCC-EE
Confidence            66899999999             5899999999999999999987533    2333 44   999999999   66 89


Q ss_pred             EEecCCCeEEEEEcccCCc----ceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCC
Q 019059          225 VTAADESGIHLWDLRMLKA----PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTS  285 (346)
Q Consensus       225 ~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~  285 (346)
                      ++++.||.|++||++....    .......|...|++++|+|++ .+|++++.||.|++||++..
T Consensus       223 ~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg-~~l~s~s~Dg~I~vwd~~~~  286 (753)
T 3jro_A          223 ASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG-NVLALSGGDNKVTLWKENLE  286 (753)
T ss_dssp             EEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTT-CCEEEECSSSCEECCBCCSS
T ss_pred             EEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCC-CEEEEEcCCCEEEEEecCCC
Confidence            9999999999999987421    233345688999999999999 99999999999999999853

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=3.5e-30  Score=224.72  Aligned_cols=249  Identities=19%  Similarity=0.270  Sum_probs=200.5

Q ss_pred             cccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCc
Q 019059           11 GLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGES   90 (346)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d   90 (346)
                      .+..+...|.++.+++++..+++|+    .++.|.+|++....   ....+.+|...|.+++++  +..+++    ++.|
T Consensus       142 ~~~~~~~~V~sv~fspdg~~lasgs----~Dg~v~iWd~~~~~---~~~~~~~h~~~v~~~s~~--~~~l~s----gs~d  208 (420)
T 4gga_A          142 QMEQPGEYISSVAWIKEGNYLAVGT----SSAEVQLWDVQQQK---RLRNMTSHSARVGSLSWN--SYILSS----GSRS  208 (420)
T ss_dssp             ECCSTTCCEEEEEECTTSSEEEEEE----TTSCEEEEETTTTE---EEEEECCCSSCEEEEEEE--TTEEEE----EETT
T ss_pred             EecCCCCcEEEEEECCCCCEEEEEE----CCCeEEEEEcCCCc---EEEEEeCCCCceEEEeeC--CCEEEE----EeCC
Confidence            3444456788899999999999885    67899999987642   346677899999998885  445555    4799


Q ss_pred             ceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCcee
Q 019059           91 YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHY  170 (346)
Q Consensus        91 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  170 (346)
                      +.+++|+...        ....+..+.+|...+..+.|+|++.. +++++.|+.+++|+..+++...... .....|...
T Consensus       209 ~~i~~~d~~~--------~~~~~~~~~~h~~~~~~~~~~~~g~~-l~s~~~D~~v~i~~~~~~~~~~~~~-~~~~~~~~~  278 (420)
T 4gga_A          209 GHIHHHDVRV--------AEHHVATLSGHSQEVCGLRWAPDGRH-LASGGNDNLVNVWPSAPGEGGWVPL-QTFTQHQGA  278 (420)
T ss_dssp             SEEEEEETTS--------SSCEEEEEECCSSCEEEEEECTTSSE-EEEEETTSCEEEEESSCCSSCSCCS-EEECCCSSC
T ss_pred             CceeEeeecc--------cceeeEEecccccceeeeeecCCCCe-eeeeeccccceEEeeccccccceee-eeecccCCc
Confidence            9999999873        34566778899999999999999994 6777889999999998765432221 122346678


Q ss_pred             eEEEEeCCCCCcEEEE---ecCCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEE-ecCCCeEEEEEcccCCcce
Q 019059          171 LSGGAWDPHDVNAVAA---TCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVT-AADESGIHLWDLRMLKAPI  245 (346)
Q Consensus       171 v~~~~~~~~~~~l~~~---~~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~  245 (346)
                      |.+++|+|.+..+++.   +.|+.|++||++++++...+.... +.++.|+|++..++++ |+.|+.|++||+++ ..++
T Consensus       279 V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~-~~~v  357 (420)
T 4gga_A          279 VKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT-MAKV  357 (420)
T ss_dssp             EEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT-CCEE
T ss_pred             eeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCC-CcEE
Confidence            9999999988776543   358999999999999888877444 9999999999844433 34789999999997 5689


Q ss_pred             eeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          246 QELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       246 ~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      ..+.+|...|++++|+|+| .+|+||+.|++|+|||+..
T Consensus       358 ~~l~gH~~~V~~l~~spdg-~~l~S~s~D~tvriWdv~~  395 (420)
T 4gga_A          358 AELKGHTSRVLSLTMSPDG-ATVASAAADETLRLWRCFE  395 (420)
T ss_dssp             EEECCCSSCEEEEEECTTS-SCEEEEETTTEEEEECCSC
T ss_pred             EEEcCCCCCEEEEEEcCCC-CEEEEEecCCeEEEEECCC
Confidence            9999999999999999999 9999999999999999986

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.98  E-value=7e-30  Score=222.45  Aligned_cols=244  Identities=14%  Similarity=0.125  Sum_probs=180.6

Q ss_pred             ccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCC-----ceEEEEeecCCCCcEE
Q 019059           63 SHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVG-----KINCVLWWSSGRHDKL  137 (346)
Q Consensus        63 ~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~~~~  137 (346)
                      .|...|.+++|||+|..|+++    +.||.|++|+.+         .  .+..+. |..     .|.+++|+|+|+. ++
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~----s~dg~V~iwd~~---------~--~l~~l~-~~~~~~~~sv~svafSPDG~~-LA  145 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVL----SNNGNVSVFKDN---------K--MLTNLD-SKGNLSSRTYHCFEWNPIESS-IV  145 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEE----ETTSCEEEEETT---------E--EEEECC-CSSCSTTTCEEEEEECSSSSC-EE
T ss_pred             CCCCcEEEEEECCCCCEEEEE----eCCCcEEEEeCC---------c--eeeecc-CCCccccccEEEEEEcCCCCE-EE
Confidence            567899999999999999986    699999999965         2  556666 665     5999999999995 77


Q ss_pred             EEecCCeEEEEEcCCCCC------CceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCcc---ceeec
Q 019059          138 VSIDEENIFLWSLDCSNK------NAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKT---NSIEH  208 (346)
Q Consensus       138 ~~~~d~~i~vwd~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---~~~~~  208 (346)
                      +++.||+|++||+.++..      ..........+|...|.+++|+|++  +++++.|+.+++||+..+...   .++..
T Consensus       146 sgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~  223 (588)
T 2j04_A          146 VGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQN  223 (588)
T ss_dssp             EEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEEC
T ss_pred             EEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecc
Confidence            788999999999987542      1122222235678899999999998  888999999999999987743   34533


Q ss_pred             cc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEe--CCCCCcEEEEecCCCeEEEEecC
Q 019059          209 AH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCC--NPEYDGFILSAGTDSTVNLWLVS  283 (346)
Q Consensus       209 ~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~--~~~~~~~l~s~~~d~~i~iwd~~  283 (346)
                      +|   |.+++|+  +. .+++++ ++.|++||+.. ........+|...+..++|  +|++ ..|+++++||+ ++|...
T Consensus       224 ~h~~~V~svaFs--g~-~LASa~-~~tIkLWd~~~-~~~~~~~~gh~~~V~~va~~~s~d~-~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          224 ASRRKITDLKIV--DY-KVVLTC-PGYVHKIDLKN-YSISSLKTGSLENFHIIPLNHEKES-TILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             CCSSCCCCEEEE--TT-EEEEEC-SSEEEEEETTT-TEEEEEECSCCSCCCEEEETTCSSC-EEEEECSSCEE-EEEESS
T ss_pred             cccCcEEEEEEE--CC-EEEEEe-CCeEEEEECCC-CeEEEEEcCCCceEEEEEeeeCCCC-CEEEEEcCCCC-EEEeec
Confidence            44   9999999  45 788887 69999999986 4332333389999999999  9999 99999999999 999986


Q ss_pred             CCCCCCCC--cccc---cCCccccccccccccccccceeeEEEeCCCCCcEEEEeec
Q 019059          284 TSNHDELP--SESL---VESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSY  335 (346)
Q Consensus       284 ~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  335 (346)
                      ...-....  ....   .... ...+..+..+.+ ...|++++|+|+|+ ++|+++.
T Consensus       297 ~~~~spd~~l~a~~d~~v~lW-~~~g~~l~~~~~-~~~I~~va~SPdG~-~lA~~~~  350 (588)
T 2j04_A          297 ELHVTADNIIAPYLEKKFKKW-STIWNEFNNYET-TLVIHGISLSPDGY-SIAIVYD  350 (588)
T ss_dssp             SEEEECCCSSHHHHHHHHHHT-TTTTTSSSSSCC-EEEEEEEEECTTSS-EEEEEEE
T ss_pred             cEEECCCceEEEEcCCEEEEE-ECCCCceeeecc-ceEEEEEEECCCCC-EEEEEEe
Confidence            31100000  0000   0000 012233444444 66799999999997 8887763

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=7.1e-29  Score=217.28  Aligned_cols=258  Identities=11%  Similarity=0.070  Sum_probs=194.0

Q ss_pred             EEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeee-----eeecc
Q 019059           45 HLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIA-----ALDAH  119 (346)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~-----~~~~~  119 (346)
                      .+|.++.................+.+++|+| +..++++   ++.++.|++||+.         .++...     .+..|
T Consensus       102 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~~~~---~~~~~~i~~~d~~---------~g~~~~~~~~~~~~~~  168 (433)
T 3bws_A          102 KLIALDKEGITHRFISRFKTGFQPKSVRFID-NTRLAIP---LLEDEGMDVLDIN---------SGQTVRLSPPEKYKKK  168 (433)
T ss_dssp             CEEECCBTTCSEEEEEEEECSSCBCCCEESS-SSEEEEE---BTTSSSEEEEETT---------TCCEEEECCCHHHHTT
T ss_pred             EEEEECCCCCcceEEEEEcCCCCceEEEEeC-CCeEEEE---eCCCCeEEEEECC---------CCeEeeecCccccccc
Confidence            5555555433222222233445677999999 5555555   4778899999988         444444     45578


Q ss_pred             CCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEe-cCCeEEEEEcc
Q 019059          120 VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT-CESSVQFWDLR  198 (346)
Q Consensus       120 ~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~  198 (346)
                      ...|.+++|++++. ++++++.|+.|++||+++++....+.     .|...+.+++|+|+++.+++++ .++.|++||++
T Consensus       169 ~~~v~~~~~~~~~~-~~~s~~~d~~v~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~  242 (433)
T 3bws_A          169 LGFVETISIPEHNE-LWVSQMQANAVHVFDLKTLAYKATVD-----LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRK  242 (433)
T ss_dssp             CCEEEEEEEGGGTE-EEEEEGGGTEEEEEETTTCCEEEEEE-----CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCceeEEEEcCCCE-EEEEECCCCEEEEEECCCceEEEEEc-----CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECC
Confidence            88999999999887 46666789999999998765433332     3445789999999999887666 68999999999


Q ss_pred             CCCccceeeccc-eeEEEeCCCCCcEEEEec--------CCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEE
Q 019059          199 SMGKTNSIEHAH-VRNVDYDTKKKHLLVTAA--------DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFIL  269 (346)
Q Consensus       199 ~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~--------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~  269 (346)
                      +++....+.... +.+++|+|+++ .+++++        .|+.|++||+++ .+.+..+ .|...+.+++|+|++..+++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~g~-~l~~~~~~~~~~~~~dg~i~~~d~~~-~~~~~~~-~~~~~~~~~~~~~~g~~l~~  319 (433)
T 3bws_A          243 TKLEIRKTDKIGLPRGLLLSKDGK-ELYIAQFSASNQESGGGRLGIYSMDK-EKLIDTI-GPPGNKRHIVSGNTENKIYV  319 (433)
T ss_dssp             TTEEEEECCCCSEEEEEEECTTSS-EEEEEEEESCTTCSCCEEEEEEETTT-TEEEEEE-EEEECEEEEEECSSTTEEEE
T ss_pred             CCcEEEEecCCCCceEEEEcCCCC-EEEEEECCCCccccCCCeEEEEECCC-CcEEeec-cCCCCcceEEECCCCCEEEE
Confidence            988777666434 99999999998 666665        588999999986 4444444 46678899999999944667


Q ss_pred             EecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeec--------------
Q 019059          270 SAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSY--------------  335 (346)
Q Consensus       270 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~--------------  335 (346)
                      +++.|+.|++||+.+                   ++.+..+. +...+.+++|+|+++ ++++++.              
T Consensus       320 ~~~~~~~v~v~d~~~-------------------~~~~~~~~-~~~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~~~g~  378 (433)
T 3bws_A          320 SDMCCSKIEVYDLKE-------------------KKVQKSIP-VFDKPNTIALSPDGK-YLYVSCRGPNHPTEGYLKKGL  378 (433)
T ss_dssp             EETTTTEEEEEETTT-------------------TEEEEEEE-CSSSEEEEEECTTSS-EEEEEECCCCCTTTCTTSCCS
T ss_pred             EecCCCEEEEEECCC-------------------CcEEEEec-CCCCCCeEEEcCCCC-EEEEEecCCCccccccccccc
Confidence            779999999999997                   66666654 556689999999997 5666654              


Q ss_pred             -CCeEEEeeec
Q 019059          336 -DGRVRNHMLE  345 (346)
Q Consensus       336 -d~~v~vw~~~  345 (346)
                       ||.|++||++
T Consensus       379 ~dg~v~~~d~~  389 (433)
T 3bws_A          379 VLGKVYVIDTT  389 (433)
T ss_dssp             SCCEEEEEETT
T ss_pred             cceEEEEEECC
Confidence             5799999975

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=1.6e-29  Score=207.29  Aligned_cols=253  Identities=13%  Similarity=0.089  Sum_probs=169.4

Q ss_pred             eeeecccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCC----CCeEEEeeeeccccceEEeeecCCCCceEE
Q 019059            7 GIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSG----GTELICEGLFSHPNEIWDLSSCPFDQRIFS   82 (346)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~   82 (346)
                      .++|.......++..+.+.++..-+++-...--+-+.+..+-++++    +..+..   .+|...|.++   +++ +++.
T Consensus        77 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s---~g~~~~v~~l---~~g-~lv~  149 (356)
T 2w18_A           77 EKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLK---SGNIKAVLGL---TKR-RLVS  149 (356)
T ss_dssp             EEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEE---EEEEEEEEEE---TTT-EEEE
T ss_pred             eeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEe---CCCeEEEEec---CCC-cEEE
Confidence            3556666555566666666655555444333334455666666655    333322   2344455544   333 3333


Q ss_pred             EEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeec---CCCCcEEEEecCCeEEEEEcCCCCCCcee
Q 019059           83 TVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWS---SGRHDKLVSIDEENIFLWSLDCSNKNAQV  159 (346)
Q Consensus        83 ~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~d~~i~vwd~~~~~~~~~~  159 (346)
                      +. ..+.|+.|++|++..        .++.+..+..|...+..++|++   ++. ++++++.|++|+|||+.+++....+
T Consensus       150 ss-~~g~d~~V~~~~~s~--------dG~~~~s~~~~~~~v~~l~fs~~~g~~~-~LaSgS~D~TIkIWDl~TGk~l~tL  219 (356)
T 2w18_A          150 SS-GTLSDQQVEVMTFAE--------DGGGKENQFLMPPEETILTFAEVQGMQE-ALLGTTIMNNIVIWNLKTGQLLKKM  219 (356)
T ss_dssp             EE-SSSTTCEEEEEEECT--------TSCEEEEEEECCCSSCEEEEEEEETSTT-EEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             ec-ccCCCCcEEEEEECC--------CCceeeeeccCCCceeeEEeeccCCCCc-eEEEecCCCcEEEEECCCCcEEEEE
Confidence            31 134699999999952        5777788889999999999998   445 3566689999999999988755554


Q ss_pred             eecccCCCceeeEEEEeCCCCCcE------------EEEecCCeEEEEEccCCCcccee----eccc---eeEEEeCCCC
Q 019059          160 QSKQSSGMLHYLSGGAWDPHDVNA------------VAATCESSVQFWDLRSMGKTNSI----EHAH---VRNVDYDTKK  220 (346)
Q Consensus       160 ~~~~~~~~~~~v~~~~~~~~~~~l------------~~~~~d~~i~i~d~~~~~~~~~~----~~~~---v~~~~~~~~~  220 (346)
                      ...  ..+...+.+++|+|++..+            ++++.|++|++||..+++.+..+    ..+|   +.+..++  +
T Consensus       220 ~g~--~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g  295 (356)
T 2w18_A          220 HID--DSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--D  295 (356)
T ss_dssp             ECC--C---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--T
T ss_pred             cCC--CcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--C
Confidence            321  1223467888999999876            45667899999999998876544    2344   3333333  5


Q ss_pred             CcEEEEecCCCeEEEEEcccCCcceeeecCCCcceE-EEEeCCCCCcEEEEecCCCeEEEEecC
Q 019059          221 KHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTW-AVCCNPEYDGFILSAGTDSTVNLWLVS  283 (346)
Q Consensus       221 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~-~v~~~~~~~~~l~s~~~d~~i~iwd~~  283 (346)
                      . ++++++.|++|+|||+++ ++.+.++.+|...+. +++|+|+| .+|++|+.|++|+|||+.
T Consensus       296 ~-~lASgS~DgTIkIWDl~t-Gk~l~tL~gH~~~vvs~vafSPDG-~~LaSGS~D~TIklWd~~  356 (356)
T 2w18_A          296 H-CAAAILTSGTIAIWDLLL-GQCTALLPPVSDQHWSFVKWSGTD-SHLLAGQKDGNIFVYHYS  356 (356)
T ss_dssp             T-EEEEEETTSCEEEEETTT-CSEEEEECCC--CCCCEEEECSSS-SEEEEECTTSCEEEEEEC
T ss_pred             C-EEEEEcCCCcEEEEECCC-CcEEEEecCCCCCeEEEEEECCCC-CEEEEEECCCcEEEecCC
Confidence            5 799999999999999998 668899999987665 58999999 999999999999999963

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=1.4e-27  Score=206.22  Aligned_cols=236  Identities=9%  Similarity=0.045  Sum_probs=180.3

Q ss_pred             eeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEec
Q 019059           19 ISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQI   98 (346)
Q Consensus        19 ~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~   98 (346)
                      +..+.+++++..++++.   ..++.+.+|++...+  . ...+ .+...+.+++|+|++++++++   +..++.|++||+
T Consensus        34 ~~~~~~s~dg~~l~~~~---~~d~~i~v~d~~~~~--~-~~~~-~~~~~v~~~~~spdg~~l~~~---~~~~~~v~v~d~  103 (391)
T 1l0q_A           34 PMGAVISPDGTKVYVAN---AHSNDVSIIDTATNN--V-IATV-PAGSSPQGVAVSPDGKQVYVT---NMASSTLSVIDT  103 (391)
T ss_dssp             EEEEEECTTSSEEEEEE---GGGTEEEEEETTTTE--E-EEEE-ECSSSEEEEEECTTSSEEEEE---ETTTTEEEEEET
T ss_pred             cceEEECCCCCEEEEEC---CCCCeEEEEECCCCe--E-EEEE-ECCCCccceEECCCCCEEEEE---ECCCCEEEEEEC
Confidence            45566778887765432   246789999886532  2 2233 344499999999999988776   367799999999


Q ss_pred             CcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCC
Q 019059           99 PELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDP  178 (346)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  178 (346)
                      .         ..+.+..+.. ...+.+++|+|+++.++++++.++.|++||+.+++....+..      ...+..++|+|
T Consensus       104 ~---------~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~------~~~~~~~~~~~  167 (391)
T 1l0q_A          104 T---------SNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV------GRSPKGIAVTP  167 (391)
T ss_dssp             T---------TTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC------CSSEEEEEECT
T ss_pred             C---------CCeEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEec------CCCcceEEECC
Confidence            8         5666666654 456899999999997556777799999999987654333221      12568999999


Q ss_pred             CCCcEE-EEecCCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEec---CCCeEEEEEcccCCcceeeecCCCc
Q 019059          179 HDVNAV-AATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAA---DESGIHLWDLRMLKAPIQELPGHTH  253 (346)
Q Consensus       179 ~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~  253 (346)
                      +++.++ +++.++.|++||+++++....+.... +.+++|+|+++ .+++++   .++.|++||+++ .+++..+..|. 
T Consensus       168 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~-~l~~~~~~~~~~~v~~~d~~~-~~~~~~~~~~~-  244 (391)
T 1l0q_A          168 DGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGT-KAYVTNVDKYFNTVSMIDTGT-NKITARIPVGP-  244 (391)
T ss_dssp             TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSS-EEEEEEECSSCCEEEEEETTT-TEEEEEEECCS-
T ss_pred             CCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCC-EEEEEecCcCCCcEEEEECCC-CeEEEEEecCC-
Confidence            999885 55678999999999988777766444 99999999998 555555   689999999987 55677777654 


Q ss_pred             ceEEEEeCCCCCcEE-EEecCCCeEEEEecCC
Q 019059          254 WTWAVCCNPEYDGFI-LSAGTDSTVNLWLVST  284 (346)
Q Consensus       254 ~v~~v~~~~~~~~~l-~s~~~d~~i~iwd~~~  284 (346)
                      .+.+++|+|++ .+| ++++.|+.|++||+.+
T Consensus       245 ~~~~~~~s~dg-~~l~~s~~~d~~v~v~d~~~  275 (391)
T 1l0q_A          245 DPAGIAVTPDG-KKVYVALSFXNTVSVIDTAT  275 (391)
T ss_dssp             SEEEEEECTTS-SEEEEEETTTTEEEEEETTT
T ss_pred             CccEEEEccCC-CEEEEEcCCCCEEEEEECCC
Confidence            57899999999 655 7778999999999997

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=2.1e-29  Score=217.70  Aligned_cols=229  Identities=17%  Similarity=0.120  Sum_probs=165.0

Q ss_pred             CCCCeEEEEEecCCCCe--EEEeeeeccccceEEeeecC--------CCCceEEEEeecCCcceEEEEecCcccCCCCCc
Q 019059           39 KEENEVHLLRLSSGGTE--LICEGLFSHPNEIWDLSSCP--------FDQRIFSTVFSTGESYGAAIWQIPELYGQLNSP  108 (346)
Q Consensus        39 ~~~~~i~~~~~~~~~~~--~~~~~~~~h~~~v~~~~~~~--------~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~  108 (346)
                      ..++.+++|+.......  .....+.+|.+.|++++|+|        +++.|+++    +.|++|+|||+.         
T Consensus       108 ~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~----s~D~tv~~Wd~~---------  174 (393)
T 4gq1_A          108 CQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASV----GDDCTLIIWRLT---------  174 (393)
T ss_dssp             ETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEE----ETTSEEEEEEEE---------
T ss_pred             eCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEE----ECCCeEEEEECC---------
Confidence            46889999998875322  12345779999999999998        56666664    799999999997         


Q ss_pred             cceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeee--------------------cccCCCc
Q 019059          109 QLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQS--------------------KQSSGML  168 (346)
Q Consensus       109 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~--------------------~~~~~~~  168 (346)
                      ...++..+..|...|.+++|+|++..++++++.|+.|++||+.+++.......                    ....+|.
T Consensus       175 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~  254 (393)
T 4gq1_A          175 DEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIA  254 (393)
T ss_dssp             TTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCS
T ss_pred             CCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccc
Confidence            55666777789999999999999876678888999999999987654322211                    1123566


Q ss_pred             eeeEEEEeC-CCCCcEEEEecCCeEEEEEccCCCccceeeccc---------------------eeEEEeCCCCCcEEEE
Q 019059          169 HYLSGGAWD-PHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---------------------VRNVDYDTKKKHLLVT  226 (346)
Q Consensus       169 ~~v~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---------------------v~~~~~~~~~~~~l~~  226 (346)
                      ..+.++.|. |+++.+++++.|+.+++||+..++....+....                     +..+.+.+.+..++++
T Consensus       255 ~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  334 (393)
T 4gq1_A          255 SSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATA  334 (393)
T ss_dssp             SSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEE
T ss_pred             ccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEE
Confidence            678888886 789999999999999999998776544332110                     2222333334446778


Q ss_pred             ecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecC
Q 019059          227 AADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVS  283 (346)
Q Consensus       227 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~  283 (346)
                      |+.||.|++||+.+ ..+...+..|..+|.+++|+|+| ++||+++.|| +.+|.+.
T Consensus       335 gs~Dg~V~lwd~~~-~~~~~~~~~~~~~V~svafspdG-~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          335 HSQHGLIQLINTYE-KDSNSIPIQLGMPIVDFCWHQDG-SHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             ETTTTEEEEEETTC-TTCCEEEEECSSCEEEEEECTTS-SEEEEEESSE-EEEEEEG
T ss_pred             ECCCCEEEEEECCC-CcEEEEecCCCCcEEEEEEcCCC-CEEEEEeCCC-eEEEEEe
Confidence            88999999999987 45666777889999999999999 9999999776 6666654

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=1.2e-27  Score=200.54  Aligned_cols=247  Identities=19%  Similarity=0.265  Sum_probs=195.1

Q ss_pred             cceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcce
Q 019059           13 KYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYG   92 (346)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~   92 (346)
                      ..+...+.++.+++++..++.|+    .++.+.+|++...+   ....+.+|...+.++.+.  +..++++    +.++.
T Consensus        64 ~~~~~~V~~v~~~~~~~~l~sgs----~Dg~v~iw~~~~~~---~~~~~~~h~~~~~~~~~~--~~~l~s~----~~~~~  130 (318)
T 4ggc_A           64 EQPGEYISSVAWIKEGNYLAVGT----SSAEVQLWDVQQQK---RLRNMTSHSARVGSLSWN--SYILSSG----SRSGH  130 (318)
T ss_dssp             CSTTCCEEEEEECTTSSEEEEEE----TTSEEEEEETTTTE---EEEEEECCSSCEEEEEEE--TTEEEEE----ETTSE
T ss_pred             cCCCCeEEEEEECCCCCEEEEEE----CCCcEEEeecCCce---eEEEecCccceEEEeecC--CCEEEEE----ecCCc
Confidence            33455678888899998888874    67899999887642   345677899888876664  4555553    68899


Q ss_pred             EEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeE
Q 019059           93 AAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLS  172 (346)
Q Consensus        93 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~  172 (346)
                      +++|+...        ....+..+.+|...+..+.++++++. +++++.|+.|++||+.+++....... ....+...+.
T Consensus       131 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~v~  200 (318)
T 4ggc_A          131 IHHHDVRV--------AEHHVATLSGHSQEVCGLRWAPDGRH-LASGGNDNLVNVWPSAPGEGGWVPLQ-TFTQHQGAVK  200 (318)
T ss_dssp             EEEEETTS--------SSCEEEEEECCSSCEEEEEECTTSSE-EEEEETTSCEEEEESSCBTTBSCCSE-EECCCCSCEE
T ss_pred             eEeeecCC--------CceeEEEEcCccCceEEEEEcCCCCE-EEEEecCcceeEEECCCCccccccee-eecccCCceE
Confidence            99999873        34566778899999999999999984 77778899999999987654332222 2234556899


Q ss_pred             EEEeCCCCCcEE---EEecCCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEE-ecCCCeEEEEEcccCCcceee
Q 019059          173 GGAWDPHDVNAV---AATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVT-AADESGIHLWDLRMLKAPIQE  247 (346)
Q Consensus       173 ~~~~~~~~~~l~---~~~~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~  247 (346)
                      .++++|++..++   +++.++.|++||.+............ +..+.|+|++..++++ |+.|+.|++||+++ .+++.+
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~-~~~~~~  279 (318)
T 4ggc_A          201 AVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT-MAKVAE  279 (318)
T ss_dssp             EEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT-CCEEEE
T ss_pred             EEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCC-CcEEEE
Confidence            999999887765   33468999999999888776665444 9999999999844433 45799999999998 668999


Q ss_pred             ecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          248 LPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       248 ~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      +.+|...|++++|+|++ .+|++|+.|++|+|||+..
T Consensus       280 l~gH~~~V~~l~~spdg-~~l~S~s~D~~v~iWd~~~  315 (318)
T 4ggc_A          280 LKGHTSRVLSLTMSPDG-ATVASAAADETLRLWRCFE  315 (318)
T ss_dssp             ECCCSSCEEEEEECTTS-SCEEEEETTTEEEEECCSC
T ss_pred             EcCCCCCEEEEEEcCCC-CEEEEEecCCeEEEEECCC
Confidence            99999999999999999 9999999999999999976

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.96  E-value=8.4e-27  Score=198.16  Aligned_cols=290  Identities=12%  Similarity=0.089  Sum_probs=199.8

Q ss_pred             ceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCc
Q 019059           29 TSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSP  108 (346)
Q Consensus        29 ~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~  108 (346)
                      +++++|++....+..+++|.++.....+.......+...+..++|+|+++ |+++.. .+.++.|.+|+++       ..
T Consensus         3 ~~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~-~~~~~~v~~~~~~-------~g   73 (347)
T 3hfq_A            3 ERILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDK-EDDEGGIAAWQID-------GQ   73 (347)
T ss_dssp             EEEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEE-ETTEEEEEEEEEE-------TT
T ss_pred             cEEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEe-cCCCceEEEEEec-------CC
Confidence            57888988877788999999998777666555566777888999999998 666531 1347899999996       12


Q ss_pred             cceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCC-------CceeeEEEEeCCCCC
Q 019059          109 QLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG-------MLHYLSGGAWDPHDV  181 (346)
Q Consensus       109 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~  181 (346)
                      ..+.+..+..+...+..++|+|+++.+++++..++.|.+|++........+......+       ....+.+++|+|+++
T Consensus        74 ~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~  153 (347)
T 3hfq_A           74 TAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR  153 (347)
T ss_dssp             EEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC
T ss_pred             cEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc
Confidence            3345555556777889999999999644444468999999996433222222111111       122478899999999


Q ss_pred             cEEEEe-cCCeEEEEEcc-CCCccc--eee--ccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccC-Cc--ceeeecCC
Q 019059          182 NAVAAT-CESSVQFWDLR-SMGKTN--SIE--HAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRML-KA--PIQELPGH  251 (346)
Q Consensus       182 ~l~~~~-~d~~i~i~d~~-~~~~~~--~~~--~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~--~~~~~~~~  251 (346)
                       ++++. .++.|++||+. +++...  .+.  .+. +..++|+|++++++++...++.|.+|++... ..  .+..+...
T Consensus       154 -l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~  232 (347)
T 3hfq_A          154 -LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTI  232 (347)
T ss_dssp             -EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESS
T ss_pred             -EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeec
Confidence             55544 57899999998 443221  111  222 8889999999866666778899999998742 21  12222222


Q ss_pred             C------cceEEEEeCCCCCcEE-EEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCC
Q 019059          252 T------HWTWAVCCNPEYDGFI-LSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS  324 (346)
Q Consensus       252 ~------~~v~~v~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  324 (346)
                      .      ..+..++|+|+| ++| ++...++.|.+|++...                ...+.+..+..+...+..++|+|
T Consensus       233 ~~~~~~~~~~~~i~~spdG-~~l~v~~~~~~~v~v~~~~~~----------------g~~~~~~~~~~~~~~~~~~~~sp  295 (347)
T 3hfq_A          233 PADYTAHNGAAAIRLSHDG-HFLYVSNRGYNTLAVFAVTAD----------------GHLTLIQQISTEGDFPRDFDLDP  295 (347)
T ss_dssp             CTTCCSCCEEEEEEECTTS-CEEEEEEETTTEEEEEEECGG----------------GCEEEEEEEECSSSCCCEEEECT
T ss_pred             CCCCCCCCcceeEEECCCC-CEEEEEeCCCCEEEEEEECCC----------------CcEEEeEEEecCCCCcCeEEECC
Confidence            2      458889999999 766 56667899999999740                00244445555556689999999


Q ss_pred             CCCcEEEEeecCCeEEEeeec
Q 019059          325 REPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       325 ~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      ++++++++...++.|.+|+++
T Consensus       296 dg~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          296 TEAFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             TSSEEEEEETTTTEEEEEEEC
T ss_pred             CCCEEEEEEcCCCcEEEEEEe
Confidence            998444444456999999653

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=1.8e-27  Score=206.81  Aligned_cols=277  Identities=11%  Similarity=0.058  Sum_probs=196.5

Q ss_pred             CCcceE-EEeecccCCCC----eEEEEEe--cCCCCeEEEeeeeccccceEEeeecC--------------CCCceEEEE
Q 019059           26 TDHTSF-LTGTLSLKEEN----EVHLLRL--SSGGTELICEGLFSHPNEIWDLSSCP--------------FDQRIFSTV   84 (346)
Q Consensus        26 ~~~~~~-~~g~~~~~~~~----~i~~~~~--~~~~~~~~~~~~~~h~~~v~~~~~~~--------------~~~~l~~~~   84 (346)
                      +.+..+ +.|......++    .+++|++  ... ..+....+.+|...+..+++++              .+..++.+.
T Consensus        72 ~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s  150 (415)
T 2hqs_A           72 ALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPG-TVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVV  150 (415)
T ss_dssp             TTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTT-CEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEE
T ss_pred             hcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCC-CEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEE
Confidence            344444 46766545566    8899998  554 3444566788998888888875              256666654


Q ss_pred             eecCCc--ceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecC---CeEEEEEcCCCCCCcee
Q 019059           85 FSTGES--YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDE---ENIFLWSLDCSNKNAQV  159 (346)
Q Consensus        85 ~~~~~d--~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d---~~i~vwd~~~~~~~~~~  159 (346)
                      ...+.+  +.|++||++          ......+..|...+.+++|+|+|+. ++.++.+   ..|++||+.+++.. .+
T Consensus       151 ~~~~~~~~~~i~i~d~~----------g~~~~~l~~~~~~v~~~~~Spdg~~-la~~s~~~~~~~i~~~d~~tg~~~-~l  218 (415)
T 2hqs_A          151 QTNGGQFPYELRVSDYD----------GYNQFVVHRSPQPLMSPAWSPDGSK-LAYVTFESGRSALVIQTLANGAVR-QV  218 (415)
T ss_dssp             ECSSSSCCEEEEEEETT----------SCSCEEEEEESSCEEEEEECTTSSE-EEEEECTTSSCEEEEEETTTCCEE-EE
T ss_pred             ecCCCCccceEEEEcCC----------CCCCEEEeCCCCcceeeEEcCCCCE-EEEEEecCCCcEEEEEECCCCcEE-Ee
Confidence            221111  799999986          2345667789999999999999996 4444445   49999999876532 22


Q ss_pred             eecccCCCceeeEEEEeCCCCCcEE-EEecCC--eEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecC-CC--e
Q 019059          160 QSKQSSGMLHYLSGGAWDPHDVNAV-AATCES--SVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAAD-ES--G  232 (346)
Q Consensus       160 ~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~--~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~-dg--~  232 (346)
                      .     .+...+.+++|+|+++.|+ +++.++  .|++||+++++......... +.+++|+|+++ .|++++. ++  .
T Consensus       219 ~-----~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~-~l~~~s~~~g~~~  292 (415)
T 2hqs_A          219 A-----SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQ-NLAFTSDQAGRPQ  292 (415)
T ss_dssp             E-----CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSS-EEEEEECTTSSCE
T ss_pred             e-----cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCC-EEEEEECCCCCcE
Confidence            1     2344789999999999888 444444  59999999877533222222 99999999998 5555554 55  6


Q ss_pred             EEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCC---CeEEEEecCCCCCCCCCcccccCCccccccccccc
Q 019059          233 IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTD---STVNLWLVSTSNHDELPSESLVESPNQRANSLLNS  309 (346)
Q Consensus       233 i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (346)
                      |++||+.. . ....+..+...+.+++|+|+| ++|++++.+   ..|++||+.+                   ++. ..
T Consensus       293 i~~~d~~~-~-~~~~l~~~~~~~~~~~~spdG-~~l~~~~~~~g~~~i~~~d~~~-------------------~~~-~~  349 (415)
T 2hqs_A          293 VYKVNING-G-APQRITWEGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLAT-------------------GGV-QV  349 (415)
T ss_dssp             EEEEETTS-S-CCEECCCSSSEEEEEEECTTS-SEEEEEEECSSCEEEEEEETTT-------------------CCE-EE
T ss_pred             EEEEECCC-C-CEEEEecCCCcccCeEECCCC-CEEEEEECcCCceEEEEEECCC-------------------CCE-EE
Confidence            77778875 3 345566677889999999999 888877764   5899999987                   444 34


Q ss_pred             cccccceeeEEEeCCCCCcEEEEeecCC---eEEEeeecC
Q 019059          310 YSDYEDSVYGLAWSSREPWIFASLSYDG---RVRNHMLEK  346 (346)
Q Consensus       310 ~~~~~~~v~~~~~~~~~~~~l~s~~~d~---~v~vw~~~~  346 (346)
                      +..+. .+.+++|+|+++ +|++++.++   .|++|++++
T Consensus       350 l~~~~-~~~~~~~spdg~-~l~~~s~~~~~~~l~~~d~~g  387 (415)
T 2hqs_A          350 LSSTF-LDETPSLAPNGT-MVIYSSSQGMGSVLNLVSTDG  387 (415)
T ss_dssp             CCCSS-SCEEEEECTTSS-EEEEEEEETTEEEEEEEETTS
T ss_pred             ecCCC-CcCCeEEcCCCC-EEEEEEcCCCccEEEEEECCC
Confidence            55554 689999999998 677777666   799998753

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.96  E-value=2e-26  Score=195.17  Aligned_cols=277  Identities=12%  Similarity=0.151  Sum_probs=187.0

Q ss_pred             CCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeec
Q 019059           39 KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA  118 (346)
Q Consensus        39 ~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~  118 (346)
                      ..++.+.+|++...+. ........|...+.+++|+|+++.++++.   ..++.|.+|+++..     ....+.+..+..
T Consensus        12 ~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~spdg~~l~~~~---~~~~~v~~~~~~~~-----~~~~~~~~~~~~   82 (343)
T 1ri6_A           12 PESQQIHVWNLNHEGA-LTLTQVVDVPGQVQPMVVSPDKRYLYVGV---RPEFRVLAYRIAPD-----DGALTFAAESAL   82 (343)
T ss_dssp             GGGTEEEEEEECTTSC-EEEEEEEECSSCCCCEEECTTSSEEEEEE---TTTTEEEEEEECTT-----TCCEEEEEEEEC
T ss_pred             CCCCeEEEEEECCCCc-EEEeeeEecCCCCceEEECCCCCEEEEee---cCCCeEEEEEecCC-----CCceeecccccc
Confidence            3578999999976333 23334456788899999999999888863   44489999998621     112334445544


Q ss_pred             cCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEe-cCCeEEEEEc
Q 019059          119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT-CESSVQFWDL  197 (346)
Q Consensus       119 ~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~  197 (346)
                      +. .+..++|+|+++.+++++..++.|.+||+..+. ........ . ....+.+++|+|+++.+++++ .++.|++||+
T Consensus        83 ~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~-~~~~~~~~-~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~  158 (343)
T 1ri6_A           83 PG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGL-PVGVVDVV-E-GLDGCHSANISPDNRTLWVPALKQDRICLFTV  158 (343)
T ss_dssp             SS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTE-EEEEEEEE-C-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred             CC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCc-cccccccc-c-CCCCceEEEECCCCCEEEEecCCCCEEEEEEe
Confidence            44 789999999999644454558999999995221 11111111 1 122578899999999888887 7899999999


Q ss_pred             cC-CCccc----eee--ccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcc---eeeec---CC---CcceEEEEe
Q 019059          198 RS-MGKTN----SIE--HAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAP---IQELP---GH---THWTWAVCC  260 (346)
Q Consensus       198 ~~-~~~~~----~~~--~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~---~~---~~~v~~v~~  260 (346)
                      .+ ++...    .+.  .+. +..++|+|+++++++++..++.|.+||+......   ...+.   ..   ...+..++|
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~  238 (343)
T 1ri6_A          159 SDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHI  238 (343)
T ss_dssp             CTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEE
T ss_pred             cCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEE
Confidence            87 54322    122  222 8899999999855666668899999999631211   22222   11   235668999


Q ss_pred             CCCCCcEEE-EecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeE
Q 019059          261 NPEYDGFIL-SAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRV  339 (346)
Q Consensus       261 ~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v  339 (346)
                      +|++ .+|+ +...++.|.+||+....               ...+.+..+..+.. +.+++|+|+++.+++++..++.|
T Consensus       239 s~dg-~~l~v~~~~~~~i~v~d~~~~~---------------~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v  301 (343)
T 1ri6_A          239 TPDG-RHLYACDRTASLITVFSVSEDG---------------SVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHI  301 (343)
T ss_dssp             CTTS-SEEEEEETTTTEEEEEEECTTS---------------CCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEE
T ss_pred             CCCC-CEEEEEecCCCEEEEEEEcCCC---------------CceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeE
Confidence            9999 6555 66679999999998300               00234444444444 88999999998444444478999


Q ss_pred             EEeeec
Q 019059          340 RNHMLE  345 (346)
Q Consensus       340 ~vw~~~  345 (346)
                      .+|+++
T Consensus       302 ~v~~~d  307 (343)
T 1ri6_A          302 SVYEIV  307 (343)
T ss_dssp             EEEEEE
T ss_pred             EEEEEc
Confidence            999764

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.95  E-value=4.4e-25  Score=188.57  Aligned_cols=295  Identities=7%  Similarity=0.053  Sum_probs=196.0

Q ss_pred             CCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCC
Q 019059           25 DTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQ  104 (346)
Q Consensus        25 ~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~  104 (346)
                      .+....+++|+++.+.++.+++|.++.....+...... +...+..++|+|+++.|+++...+..++.|.+|+++..   
T Consensus        10 ~~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~---   85 (361)
T 3scy_A           10 TDSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKE---   85 (361)
T ss_dssp             GGGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETT---
T ss_pred             CCCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCC---
Confidence            33567889999988888999999998876655554444 77888899999999988887421113479999998721   


Q ss_pred             CCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeee---ccc------CCCceeeEEEE
Q 019059          105 LNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQS---KQS------SGMLHYLSGGA  175 (346)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~---~~~------~~~~~~v~~~~  175 (346)
                        ....+.+.....+......+++  +++.++++...++.|.+|++...........   ...      ..+...+.+++
T Consensus        86 --~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  161 (361)
T 3scy_A           86 --KGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVR  161 (361)
T ss_dssp             --TTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEE
T ss_pred             --CCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEE
Confidence              0123444445445566777777  7775444445689999999975443322211   000      01122457899


Q ss_pred             eCCCCCcEEEEec-CCeEEEEEccCCCc------c------ce--eeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcc
Q 019059          176 WDPHDVNAVAATC-ESSVQFWDLRSMGK------T------NS--IEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLR  239 (346)
Q Consensus       176 ~~~~~~~l~~~~~-d~~i~i~d~~~~~~------~------~~--~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  239 (346)
                      |+|+++.+++++. ++.|.+|++.....      +      ..  ...+. +..++|+|+++.++++...++.|.+||+.
T Consensus       162 ~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~  241 (361)
T 3scy_A          162 ITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYA  241 (361)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEE
T ss_pred             ECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEec
Confidence            9999998777664 78999999885542      1      11  11122 88999999998444555578999999998


Q ss_pred             cCCcc--eeee---cCCCcceEEEEeCCCCCcEEEEecC--CCeEEEEecCCCCCCCCCcccccCCcccccccccccccc
Q 019059          240 MLKAP--IQEL---PGHTHWTWAVCCNPEYDGFILSAGT--DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD  312 (346)
Q Consensus       240 ~~~~~--~~~~---~~~~~~v~~v~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (346)
                      . ...  +..+   ..+......++|+|+| ++|+++..  ++.|.+|++.....               ..+.+..+..
T Consensus       242 ~-g~~~~~~~~~~~~~~~~~~~~i~~spdg-~~l~v~~~~~~~~i~v~~~~~~~g---------------~~~~~~~~~~  304 (361)
T 3scy_A          242 D-GMLDEIQTVAADTVNAQGSGDIHLSPDG-KYLYASNRLKADGVAIFKVDETNG---------------TLTKVGYQLT  304 (361)
T ss_dssp             T-TEEEEEEEEESCSSCCCCEEEEEECTTS-SEEEEEECSSSCEEEEEEECTTTC---------------CEEEEEEEEC
T ss_pred             C-CceEEeEEEecCCCCCCCcccEEECCCC-CEEEEECCCCCCEEEEEEEcCCCC---------------cEEEeeEecC
Confidence            5 322  2222   2334557899999999 77766554  58999999963000               0123333333


Q ss_pred             ccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          313 YEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       313 ~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                       ...+.+++|+|++++++++...++.|.+|.++
T Consensus       305 -g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d  336 (361)
T 3scy_A          305 -GIHPRNFIITPNGKYLLVACRDTNVIQIFERD  336 (361)
T ss_dssp             -SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred             -CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence             34578999999998444444478999998664

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.95  E-value=1.2e-25  Score=195.29  Aligned_cols=254  Identities=12%  Similarity=0.086  Sum_probs=185.5

Q ss_pred             cceEEEeecccCCC--CeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCC
Q 019059           28 HTSFLTGTLSLKEE--NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQL  105 (346)
Q Consensus        28 ~~~~~~g~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~  105 (346)
                      ..+++........+  +.|++|++....    ...+.+|...|.+++|+|+++.|+++... +.+..|++||+.      
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~----~~~l~~~~~~v~~~~~Spdg~~la~~s~~-~~~~~i~~~d~~------  211 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGYN----QFVVHRSPQPLMSPAWSPDGSKLAYVTFE-SGRSALVIQTLA------  211 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSCS----CEEEEEESSCEEEEEECTTSSEEEEEECT-TSSCEEEEEETT------
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCCC----CEEEeCCCCcceeeEEcCCCCEEEEEEec-CCCcEEEEEECC------
Confidence            44566554332211  689999886432    24556789999999999999999887411 112589999998      


Q ss_pred             CCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCC--eEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcE
Q 019059          106 NSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEE--NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNA  183 (346)
Q Consensus       106 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  183 (346)
                         .++.. .+..|...+.+++|+|+|+.++++++.++  .|++||+.+++. ..+     ..+...+.+++|+|+++.|
T Consensus       212 ---tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l-----~~~~~~~~~~~~spdg~~l  281 (415)
T 2hqs_A          212 ---NGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQV-----TDGRSNNTEPTWFPDSQNL  281 (415)
T ss_dssp             ---TCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEC-----CCCSSCEEEEEECTTSSEE
T ss_pred             ---CCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeC-----cCCCCcccceEECCCCCEE
Confidence               44443 56678889999999999997555665554  599999986542 111     2344578999999999999


Q ss_pred             EEEec-CC--eEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCC---CeEEEEEcccCCcceeeecCCCcceE
Q 019059          184 VAATC-ES--SVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADE---SGIHLWDLRMLKAPIQELPGHTHWTW  256 (346)
Q Consensus       184 ~~~~~-d~--~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~v~  256 (346)
                      ++++. ++  .|++||+.+++.......+. +.+++|+|+++ .|++++.+   ..|++||+.. .. ...+..+. .+.
T Consensus       282 ~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~-~l~~~~~~~g~~~i~~~d~~~-~~-~~~l~~~~-~~~  357 (415)
T 2hqs_A          282 AFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGK-FMVMVSSNGGQQHIAKQDLAT-GG-VQVLSSTF-LDE  357 (415)
T ss_dssp             EEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSS-EEEEEEECSSCEEEEEEETTT-CC-EEECCCSS-SCE
T ss_pred             EEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCC-EEEEEECcCCceEEEEEECCC-CC-EEEecCCC-CcC
Confidence            88886 44  68888998876433222233 88999999999 55555543   5899999986 32 34565554 899


Q ss_pred             EEEeCCCCCcEEEEecCCC---eEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCC
Q 019059          257 AVCCNPEYDGFILSAGTDS---TVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREP  327 (346)
Q Consensus       257 ~v~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  327 (346)
                      +++|+|+| ++|++++.|+   .|++||+..                    .....+..|.+.|.+++|+|...
T Consensus       358 ~~~~spdg-~~l~~~s~~~~~~~l~~~d~~g--------------------~~~~~l~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          358 TPSLAPNG-TMVIYSSSQGMGSVLNLVSTDG--------------------RFKARLPATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             EEEECTTS-SEEEEEEEETTEEEEEEEETTS--------------------CCEEECCCSSSEEEEEEECCCCC
T ss_pred             CeEEcCCC-CEEEEEEcCCCccEEEEEECCC--------------------CcEEEeeCCCCCCcCCccccccc
Confidence            99999999 8888887776   799999875                    56777888999999999999653

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.95  E-value=3.1e-25  Score=187.19  Aligned_cols=274  Identities=8%  Similarity=0.037  Sum_probs=187.6

Q ss_pred             CCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCC
Q 019059           25 DTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQ  104 (346)
Q Consensus        25 ~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~  104 (346)
                      .++..++++..   ..++.|.+|+....+  +. ..+..+...+ .++|+|+++.++++.   ..++.|.+||+.     
T Consensus         6 ~~~~~~~~v~~---~~~~~v~~~d~~~~~--~~-~~~~~~~~~~-~~~~s~dg~~l~~~~---~~~~~i~~~d~~-----   70 (331)
T 3u4y_A            6 QTTSNFGIVVE---QHLRRISFFSTDTLE--IL-NQITLGYDFV-DTAITSDCSNVVVTS---DFCQTLVQIETQ-----   70 (331)
T ss_dssp             -CCCCEEEEEE---GGGTEEEEEETTTCC--EE-EEEECCCCEE-EEEECSSSCEEEEEE---STTCEEEEEECS-----
T ss_pred             cCCCCEEEEEe---cCCCeEEEEeCcccc--ee-eeEEccCCcc-eEEEcCCCCEEEEEe---CCCCeEEEEECC-----
Confidence            33444544432   346789999876543  22 2223345556 999999999888763   557799999997     


Q ss_pred             CCCcccee-eeeeeccCCceEEEEeecCCCCcEEEEecC-C--eEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCC
Q 019059          105 LNSPQLER-IAALDAHVGKINCVLWWSSGRHDKLVSIDE-E--NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD  180 (346)
Q Consensus       105 ~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d-~--~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  180 (346)
                          ..+. ...+..+..+..+++|+|++++ ++++..+ +  .|.+||+.+++....+..      .....+++|+|++
T Consensus        71 ----~~~~~~~~~~~~~~~~~~~~~s~dg~~-l~~~~~~~~~~~i~v~d~~~~~~~~~~~~------~~~~~~~~~spdg  139 (331)
T 3u4y_A           71 ----LEPPKVVAIQEGQSSMADVDITPDDQF-AVTVTGLNHPFNMQSYSFLKNKFISTIPI------PYDAVGIAISPNG  139 (331)
T ss_dssp             ----SSSCEEEEEEECSSCCCCEEECTTSSE-EEECCCSSSSCEEEEEETTTTEEEEEEEC------CTTEEEEEECTTS
T ss_pred             ----CCceeEEecccCCCCccceEECCCCCE-EEEecCCCCcccEEEEECCCCCeEEEEEC------CCCccceEECCCC
Confidence                4444 5666666666666999999996 4444434 3  999999987654332221      1145899999999


Q ss_pred             CcEEEEec-CCe-EEEEEccCCCccc-----eeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcc---eeeec
Q 019059          181 VNAVAATC-ESS-VQFWDLRSMGKTN-----SIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAP---IQELP  249 (346)
Q Consensus       181 ~~l~~~~~-d~~-i~i~d~~~~~~~~-----~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~  249 (346)
                      +.+++++. ++. |.+|++.....+.     .+..+. +..++|+|+++++++++..++.|++||+.. ...   +..+.
T Consensus       140 ~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~-~~~~~~~~~~~  218 (331)
T 3u4y_A          140 NGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQN-PENITLLNAVG  218 (331)
T ss_dssp             SCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSS-TTSCEEEEEEE
T ss_pred             CEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCC-Ccccceeeecc
Confidence            98777654 577 9999998654332     222223 899999999986667777889999999986 445   55565


Q ss_pred             CCCcceEEEEeCCCCCcEEE-EecCCCeEEEEecCCCCCCCCCcccccCCcccccccc--cccccc----ccc---eeeE
Q 019059          250 GHTHWTWAVCCNPEYDGFIL-SAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSL--LNSYSD----YED---SVYG  319 (346)
Q Consensus       250 ~~~~~v~~v~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~---~v~~  319 (346)
                      . ...+..++|+|+| ++|+ +...++.|.+||+.+                   ++.  +..+..    +..   ....
T Consensus       219 ~-~~~~~~~~~spdg-~~l~v~~~~~~~i~~~d~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~  277 (331)
T 3u4y_A          219 T-NNLPGTIVVSRDG-STVYVLTESTVDVFNFNQLS-------------------GTLSFVKSFGHGLLIDPRPLFGANQ  277 (331)
T ss_dssp             C-SSCCCCEEECTTS-SEEEEECSSEEEEEEEETTT-------------------TEEEEEEEEECCCCCCCGGGTTCCC
T ss_pred             C-CCCCceEEECCCC-CEEEEEEcCCCEEEEEECCC-------------------CceeeecccccccccCCCCcccccc
Confidence            3 4667899999999 7554 445578999999987                   333  111111    111   1356


Q ss_pred             EEeCCCCCcEEEEeecCCeEEEeeecC
Q 019059          320 LAWSSREPWIFASLSYDGRVRNHMLEK  346 (346)
Q Consensus       320 ~~~~~~~~~~l~s~~~d~~v~vw~~~~  346 (346)
                      ++|+|+++.+++++..++.|.+|++++
T Consensus       278 ~~~spdg~~l~v~~~~~~~v~v~d~~~  304 (331)
T 3u4y_A          278 MALNKTETKLFISANISRELKVFTISG  304 (331)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred             eEECCCCCEEEEecCCCCcEEEEEecC
Confidence            899999985666777788999999863

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.95  E-value=6.6e-26  Score=187.75  Aligned_cols=253  Identities=10%  Similarity=0.119  Sum_probs=179.4

Q ss_pred             CCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCcc-ceeeeeee
Q 019059           39 KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQ-LERIAALD  117 (346)
Q Consensus        39 ~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~-~~~~~~~~  117 (346)
                      ..++.+++|++....    ...+..|...|.+++|+|+++.++++     .++.|.+||+.         . .+......
T Consensus        19 ~~~~~i~~~d~~~~~----~~~~~~~~~~v~~~~~spdg~~l~~~-----~~~~i~~~d~~---------~~~~~~~~~~   80 (297)
T 2ojh_A           19 SMRSSIEIFNIRTRK----MRVVWQTPELFEAPNWSPDGKYLLLN-----SEGLLYRLSLA---------GDPSPEKVDT   80 (297)
T ss_dssp             CCCEEEEEEETTTTE----EEEEEEESSCCEEEEECTTSSEEEEE-----ETTEEEEEESS---------SCCSCEECCC
T ss_pred             CcceeEEEEeCCCCc----eeeeccCCcceEeeEECCCCCEEEEE-----cCCeEEEEeCC---------CCCCceEecc
Confidence            356788888876542    23456689999999999999988875     46799999998         4 44444444


Q ss_pred             cc-CCceEEEEeecCCCCcEEEEe--cCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEE-EEecCCeEE
Q 019059          118 AH-VGKINCVLWWSSGRHDKLVSI--DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAV-AATCESSVQ  193 (346)
Q Consensus       118 ~~-~~~i~~~~~~~~~~~~~~~~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~  193 (346)
                      .+ ...+.+++|+|+++. +++++  .++...+|.++...........     ...+..++|+|+++.++ ++..++.++
T Consensus        81 ~~~~~~~~~~~~spdg~~-l~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~~~~~~~spdg~~l~~~~~~~~~~~  154 (297)
T 2ojh_A           81 GFATICNNDHGISPDGAL-YAISDKVEFGKSAIYLLPSTGGTPRLMTK-----NLPSYWHGWSPDGKSFTYCGIRDQVFD  154 (297)
T ss_dssp             TTCCCBCSCCEECTTSSE-EEEEECTTTSSCEEEEEETTCCCCEECCS-----SSSEEEEEECTTSSEEEEEEEETTEEE
T ss_pred             ccccccccceEECCCCCE-EEEEEeCCCCcceEEEEECCCCceEEeec-----CCCccceEECCCCCEEEEEECCCCceE
Confidence            55 467899999999995 44444  3345555555422212222111     11478889999999887 566789999


Q ss_pred             EEEccCC-Cccceeecc-c-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEE
Q 019059          194 FWDLRSM-GKTNSIEHA-H-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILS  270 (346)
Q Consensus       194 i~d~~~~-~~~~~~~~~-~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s  270 (346)
                      +|+++.. .....+... . +.+++|+|+++.+++++..++.+++|+++.....+..+..|...+..++|+|++ .+|++
T Consensus       155 l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~  233 (297)
T 2ojh_A          155 IYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSG-DKVVF  233 (297)
T ss_dssp             EEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTS-SEEEE
T ss_pred             EEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCC-CEEEE
Confidence            9986532 222333322 2 999999999984444555689999999874455677788888899999999999 88887


Q ss_pred             ecCC-----------CeEEEEecCCCCCCCCCcccccCCcccccccc--ccccccccceeeEEEeCCCCCcEEEEeecC
Q 019059          271 AGTD-----------STVNLWLVSTSNHDELPSESLVESPNQRANSL--LNSYSDYEDSVYGLAWSSREPWIFASLSYD  336 (346)
Q Consensus       271 ~~~d-----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  336 (346)
                      ++.+           +.|.+||+..                   ++.  +..+.+|...+.+++|+|+++ .|++++.|
T Consensus       234 ~~~~~~~~~~~~~~~~~l~~~d~~~-------------------~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~  292 (297)
T 2ojh_A          234 VSYDADVFDHPRDLDVRVQLMDMDG-------------------GNVETLFDLFGGQGTMNSPNWSPDGD-EFAYVRYF  292 (297)
T ss_dssp             EEEETTCCSCCSSEEEEEEEEETTS-------------------CSCEEEEEEEESTTTSCSCCBCTTSS-EEEEEEEC
T ss_pred             EEcCCCCCcccccCceEEEEEecCC-------------------CCceeeeccCCCCcccccceECCCCC-EEEEEEec
Confidence            7765           5699999987                   433  344446777899999999998 56666544

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=1.3e-24  Score=194.61  Aligned_cols=284  Identities=11%  Similarity=0.076  Sum_probs=209.3

Q ss_pred             eeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecC----CCCceEEEEeecCCcceEEE
Q 019059           20 SDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCP----FDQRIFSTVFSTGESYGAAI   95 (346)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~l~~~~~~~~~d~~i~v   95 (346)
                      ..+.+++++..++++.    .++.|.+|+++....... ..+. +...+..++|+|    ++++++++.   ..++.|.+
T Consensus       182 ~~v~~spdg~~l~v~~----~d~~V~v~D~~~~t~~~~-~~i~-~g~~p~~va~sp~~~~dg~~l~v~~---~~~~~v~v  252 (543)
T 1nir_A          182 HISRMSASGRYLLVIG----RDARIDMIDLWAKEPTKV-AEIK-IGIEARSVESSKFKGYEDRYTIAGA---YWPPQFAI  252 (543)
T ss_dssp             EEEEECTTSCEEEEEE----TTSEEEEEETTSSSCEEE-EEEE-CCSEEEEEEECCSTTCTTTEEEEEE---EESSEEEE
T ss_pred             ceEEECCCCCEEEEEC----CCCeEEEEECcCCCCcEE-EEEe-cCCCcceEEeCCCcCCCCCEEEEEE---ccCCeEEE
Confidence            3455788888888875    348999999963333332 3333 556789999999    999988863   34789999


Q ss_pred             EecCcccCCCCCccceeeeeeec----------cCC-ceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeeccc
Q 019059           96 WQIPELYGQLNSPQLERIAALDA----------HVG-KINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQS  164 (346)
Q Consensus        96 w~~~~~~~~~~~~~~~~~~~~~~----------~~~-~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~  164 (346)
                      ||..         +.+++..+..          |.+ .+.++.++|++..++++...++.|.+||..+.+....... . 
T Consensus       253 ~D~~---------t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~-  321 (543)
T 1nir_A          253 MDGE---------TLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-G-  321 (543)
T ss_dssp             EETT---------TCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-E-
T ss_pred             Eecc---------ccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-c-
Confidence            9987         6667666654          223 7899999999987555667789999999987654331111 1 


Q ss_pred             CCCceeeEEEEeCCCCCcEEEEe-cCCeEEEEEccCCCccceeecc---c-eeEEE-eCCCCCcEEEEec-CCCeEEEEE
Q 019059          165 SGMLHYLSGGAWDPHDVNAVAAT-CESSVQFWDLRSMGKTNSIEHA---H-VRNVD-YDTKKKHLLVTAA-DESGIHLWD  237 (346)
Q Consensus       165 ~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~---~-v~~~~-~~~~~~~~l~~~~-~dg~i~i~d  237 (346)
                        +...+..+.|+|+++++++++ .+++|.+||+.+++....+..+   | -..+. ++|++..+++++. .|++|.+||
T Consensus       322 --~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d  399 (543)
T 1nir_A          322 --AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIG  399 (543)
T ss_dssp             --CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEE
T ss_pred             --cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEE
Confidence              123577899999999887766 4889999999999887776632   3 11222 4677444777775 679999999


Q ss_pred             cccC------CcceeeecCCCcceEEEEeCCCCCcEEEEec-------CCCeEEEEecCCCCCCCCCcccccCCcccccc
Q 019059          238 LRML------KAPIQELPGHTHWTWAVCCNPEYDGFILSAG-------TDSTVNLWLVSTSNHDELPSESLVESPNQRAN  304 (346)
Q Consensus       238 ~~~~------~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~-------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  304 (346)
                      +...      .+.++++..|...+..++++|++ ++|++++       .+++|.+||+.+                   .
T Consensus       400 ~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg-~~l~v~~~~~~~~~~~~~v~v~d~~~-------------------~  459 (543)
T 1nir_A          400 TDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKS-SHLYVDTTFNPDARISQSVAVFDLKN-------------------L  459 (543)
T ss_dssp             CCTTTCTTTBTSEEEEEECSCSCCCCEECCTTC-CEEEECCTTCSSHHHHTCEEEEETTC-------------------T
T ss_pred             eCCCCCchhcCeEEEEEEcCCCCceEEEcCCCC-CcEEEecCCCCCcccCceEEEEECCC-------------------C
Confidence            9862      34788899998899999999999 8999887       267999999998                   4


Q ss_pred             ccc-cc--------cccccceeeEEEeCCCCCcEEEEee----cCCeEEEeeec
Q 019059          305 SLL-NS--------YSDYEDSVYGLAWSSREPWIFASLS----YDGRVRNHMLE  345 (346)
Q Consensus       305 ~~~-~~--------~~~~~~~v~~~~~~~~~~~~l~s~~----~d~~v~vw~~~  345 (346)
                      +.. ..        +..+...+..+.|+|+|+.++++..    .|+.|.|||.+
T Consensus       460 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~  513 (543)
T 1nir_A          460 DAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDK  513 (543)
T ss_dssp             TSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETT
T ss_pred             CCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECC
Confidence            443 22        2355678999999999996665543    47999999965

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.94  E-value=3.2e-24  Score=192.00  Aligned_cols=284  Identities=10%  Similarity=0.042  Sum_probs=201.8

Q ss_pred             CCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeee-ccccceEEeeecCCCCceEEEEeecCCcceEEEEec--Cc
Q 019059           24 ADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLF-SHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQI--PE  100 (346)
Q Consensus        24 ~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~--~~  100 (346)
                      +++++..++.+    ..++.+.+|+.....  +. ..+. ++.  +..++|+|++++|+++    +.|+.|.+||+  . 
T Consensus       145 ~~p~~~~~vs~----~~d~~V~v~D~~t~~--~~-~~i~~g~~--~~~v~~spdg~~l~v~----~~d~~V~v~D~~~~-  210 (543)
T 1nir_A          145 LDLPNLFSVTL----RDAGQIALVDGDSKK--IV-KVIDTGYA--VHISRMSASGRYLLVI----GRDARIDMIDLWAK-  210 (543)
T ss_dssp             CCGGGEEEEEE----GGGTEEEEEETTTCC--EE-EEEECSTT--EEEEEECTTSCEEEEE----ETTSEEEEEETTSS-
T ss_pred             cCCCCEEEEEE----cCCCeEEEEECCCce--EE-EEEecCcc--cceEEECCCCCEEEEE----CCCCeEEEEECcCC-
Confidence            45555444333    356889999766532  22 3333 333  8899999999999986    46799999999  5 


Q ss_pred             ccCCCCCccceeeeeeeccCCceEEEEeec----CCCCcEEEEecCCeEEEEEcCCCCCCceeeecccC-----CC-cee
Q 019059          101 LYGQLNSPQLERIAALDAHVGKINCVLWWS----SGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSS-----GM-LHY  170 (346)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-----~~-~~~  170 (346)
                              +.+.+.++. +...+..++|+|    +|+++++++..++.|.+||..+.+....+......     .| ...
T Consensus       211 --------t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~  281 (543)
T 1nir_A          211 --------EPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPR  281 (543)
T ss_dssp             --------SCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCC
T ss_pred             --------CCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCc
Confidence                    567777776 455679999999    99964444456899999999877654443321100     01 126


Q ss_pred             eEEEEeCCCCCcEEEEe-cCCeEEEEEccCCCccc--eeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCccee
Q 019059          171 LSGGAWDPHDVNAVAAT-CESSVQFWDLRSMGKTN--SIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQ  246 (346)
Q Consensus       171 v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~--~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  246 (346)
                      +..+.++|++..+++.. .++.|.+||+.+.+.+.  .+..+. +.+++|+|+++++++++..+++|.+||+.+ .+.+.
T Consensus       282 v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~t-g~l~~  360 (543)
T 1nir_A          282 VAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKD-RRLSA  360 (543)
T ss_dssp             EEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTT-TEEEE
T ss_pred             eEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCC-CeEEE
Confidence            88899999887765554 68999999999876554  443333 889999999996666777789999999997 55666


Q ss_pred             eecC----CCcceEEEEeCCCCCcEEEEec-CCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEE
Q 019059          247 ELPG----HTHWTWAVCCNPEYDGFILSAG-TDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLA  321 (346)
Q Consensus       247 ~~~~----~~~~v~~v~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  321 (346)
                      .+..    |......+ ++|++..+++++. .|++|.+||+.+.+..            ...+++++++..|...+..++
T Consensus       361 ~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~------------~~~~~~v~~l~~~g~~~~~v~  427 (543)
T 1nir_A          361 LVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHP------------QYAWKKVAELQGQGGGSLFIK  427 (543)
T ss_dssp             EEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCT------------TTBTSEEEEEECSCSCCCCEE
T ss_pred             eeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCc------------hhcCeEEEEEEcCCCCceEEE
Confidence            6653    54433333 4777427777776 5899999999861111            012578888888888889999


Q ss_pred             eCCCCCcEEEEee-------cCCeEEEeeec
Q 019059          322 WSSREPWIFASLS-------YDGRVRNHMLE  345 (346)
Q Consensus       322 ~~~~~~~~l~s~~-------~d~~v~vw~~~  345 (346)
                      ++|+++ .|.+++       .+++|.+||++
T Consensus       428 ~~pdg~-~l~v~~~~~~~~~~~~~v~v~d~~  457 (543)
T 1nir_A          428 THPKSS-HLYVDTTFNPDARISQSVAVFDLK  457 (543)
T ss_dssp             CCTTCC-EEEECCTTCSSHHHHTCEEEEETT
T ss_pred             cCCCCC-cEEEecCCCCCcccCceEEEEECC
Confidence            999998 677765       37899999986

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.94  E-value=1.7e-24  Score=201.02  Aligned_cols=284  Identities=11%  Similarity=0.065  Sum_probs=194.4

Q ss_pred             EeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEe
Q 019059           18 CISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQ   97 (346)
Q Consensus        18 ~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~   97 (346)
                      .+..+.++++ .+++++.     ++.+++|++...  .  ...+..+...+.+++|+|+++.|+++     .++.|.+|+
T Consensus        83 ~v~~~~~spd-~~~~~~~-----~~~i~~~d~~~~--~--~~~l~~~~~~~~~~~~SpdG~~la~~-----~~~~i~v~~  147 (706)
T 2z3z_A           83 PSFRTLDAGR-GLVVLFT-----QGGLVGFDMLAR--K--VTYLFDTNEETASLDFSPVGDRVAYV-----RNHNLYIAR  147 (706)
T ss_dssp             CCEEEEETTT-TEEEEEE-----TTEEEEEETTTT--E--EEEEECCTTCCTTCEECTTSSEEEEE-----ETTEEEEEE
T ss_pred             CceeEEECCC-CeEEEEE-----CCEEEEEECCCC--c--eEEccCCcccccCCcCCCCCCEEEEE-----ECCeEEEEe
Confidence            4666778888 6666653     378999988653  2  23445677889999999999998885     568999999


Q ss_pred             cCcccCCCCCccceeeeeeeccCCc--------------eEEEEeecCCCCcEEEEe-----------------------
Q 019059           98 IPELYGQLNSPQLERIAALDAHVGK--------------INCVLWWSSGRHDKLVSI-----------------------  140 (346)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------i~~~~~~~~~~~~~~~~~-----------------------  140 (346)
                      +....+    ..++.......+...              +.++.|+|||+++++++.                       
T Consensus       148 ~~~~~~----~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~  223 (706)
T 2z3z_A          148 GGKLGE----GMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPL  223 (706)
T ss_dssp             CBCTTS----CCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEE
T ss_pred             cCcccc----cCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEe
Confidence            972000    003333323233222              589999999996444431                       


Q ss_pred             ---------cCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCC-----eEEEEEccCCCcccee
Q 019059          141 ---------DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCES-----SVQFWDLRSMGKTNSI  206 (346)
Q Consensus       141 ---------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~  206 (346)
                               .+..|++||+.+++... +.  ....+...+..++|+|+++.+++++.++     .|++||+.+++....+
T Consensus       224 ~y~~~g~~~~~~~l~~~d~~~~~~~~-~~--~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~  300 (706)
T 2z3z_A          224 YYPMAGTPSHHVTVGIYHLATGKTVY-LQ--TGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTL  300 (706)
T ss_dssp             CCCBTTSCCCEEEEEEEETTTTEEEE-CC--CCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEE
T ss_pred             eCCCCCCCCCeeEEEEEECCCCceEe-ec--cCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEE
Confidence                     34679999998654211 11  1123455789999999999999887665     8999999998444333


Q ss_pred             ecc-c------eeEEEeCC--CCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEE-EEeCCCCCcEE-EEecCCC
Q 019059          207 EHA-H------VRNVDYDT--KKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWA-VCCNPEYDGFI-LSAGTDS  275 (346)
Q Consensus       207 ~~~-~------v~~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~-v~~~~~~~~~l-~s~~~d~  275 (346)
                      ... +      +.+++|+|  +++ +++++..++.+++|++......+..+..+...+.. ++|+|++ ..| ++++.++
T Consensus       301 ~~~~~~~~~~~~~~~~~sp~~dg~-~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg-~~l~~~~~~~~  378 (706)
T 2z3z_A          301 FVETDKHYVEPLHPLTFLPGSNNQ-FIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKG-TRLYFESTEAS  378 (706)
T ss_dssp             EEEECSSCCCCCSCCEECTTCSSE-EEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTS-SEEEEEESSSC
T ss_pred             EEccCCCeECccCCceeecCCCCE-EEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCC-CEEEEEecCCC
Confidence            211 1      36789999  998 88888899999999887435567777778877876 7999999 555 4555555


Q ss_pred             ----eEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecC---CeEEEeeecC
Q 019059          276 ----TVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYD---GRVRNHMLEK  346 (346)
Q Consensus       276 ----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---~~v~vw~~~~  346 (346)
                          .|..||+.+                   ++ ...+. |...+.+++|+|+++.++++++.+   +.|++|++++
T Consensus       379 ~~~~~l~~~d~~~-------------------~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~  435 (706)
T 2z3z_A          379 PLERHFYCIDIKG-------------------GK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGK  435 (706)
T ss_dssp             TTCBEEEEEETTC-------------------CC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSS
T ss_pred             CceEEEEEEEcCC-------------------CC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCC
Confidence                566667665                   33 23333 455689999999998444444443   5699999753

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.93  E-value=1.2e-23  Score=177.39  Aligned_cols=237  Identities=8%  Similarity=-0.012  Sum_probs=171.1

Q ss_pred             eeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEc
Q 019059           71 LSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSL  150 (346)
Q Consensus        71 ~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~  150 (346)
                      ..|.+++..++++   ++.++.|.+||+.         .++.+..+..+...+ .++|+|+++.+++++..++.|.+||+
T Consensus         3 ~~~~~~~~~~~v~---~~~~~~v~~~d~~---------~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~   69 (331)
T 3u4y_A            3 AMFQTTSNFGIVV---EQHLRRISFFSTD---------TLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIET   69 (331)
T ss_dssp             ----CCCCEEEEE---EGGGTEEEEEETT---------TCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEEC
T ss_pred             eeEcCCCCEEEEE---ecCCCeEEEEeCc---------ccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEEC
Confidence            3466777776666   3678899999998         566666666666667 99999999965555555889999999


Q ss_pred             CCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecC-C--eEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEE
Q 019059          151 DCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE-S--SVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVT  226 (346)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~--~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~  226 (346)
                      .+++........    +.....+++|+|+++.++++..+ +  .|.+||+.+++....+..+. +.+++|+|++++++++
T Consensus        70 ~~~~~~~~~~~~----~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~  145 (331)
T 3u4y_A           70 QLEPPKVVAIQE----GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILI  145 (331)
T ss_dssp             SSSSCEEEEEEE----CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEE
T ss_pred             CCCceeEEeccc----CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEE
Confidence            876641222211    12234449999999999854444 2  89999999998877776545 9999999999866666


Q ss_pred             ecCCCe-EEEEEcccCCcce---eeecCCCcceEEEEeCCCCCc-EEEEecCCCeEEEEecCCCCCCCCCcccccCCccc
Q 019059          227 AADESG-IHLWDLRMLKAPI---QELPGHTHWTWAVCCNPEYDG-FILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQ  301 (346)
Q Consensus       227 ~~~dg~-i~i~d~~~~~~~~---~~~~~~~~~v~~v~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  301 (346)
                      ...++. |.+|++...+...   .........+..++|+|+| + +++++..++.|++||+.+                 
T Consensus       146 ~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~d~~~-----------------  207 (331)
T 3u4y_A          146 DRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDG-NFAFVANLIGNSIGILETQN-----------------  207 (331)
T ss_dssp             EETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTS-SEEEEEETTTTEEEEEECSS-----------------
T ss_pred             ecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCC-CEEEEEeCCCCeEEEEECCC-----------------
Confidence            677678 9999987533221   1122344567999999999 6 555666789999999987                 


Q ss_pred             ccccc---ccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          302 RANSL---LNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       302 ~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                        ++.   +..+..+ ..+..++|+|+++.++++...++.|.+||++
T Consensus       208 --~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~  251 (331)
T 3u4y_A          208 --PENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQL  251 (331)
T ss_dssp             --TTSCEEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETT
T ss_pred             --CcccceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECC
Confidence              555   5555443 4578999999998566666678889999975

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.93  E-value=2.2e-23  Score=177.33  Aligned_cols=272  Identities=11%  Similarity=0.062  Sum_probs=193.1

Q ss_pred             eeccCCCCcceEEEeecccC---CCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEE
Q 019059           20 SDVKADTDHTSFLTGTLSLK---EENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIW   96 (346)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw   96 (346)
                      ..+.+++++.+++++.....   .++.+.+|+.....  .. .. ......+..++|+|+++.++++   +..++.|.+|
T Consensus        44 ~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~--~~-~~-~~~~~~~~~~~~s~dg~~l~v~---~~~~~~v~~~  116 (353)
T 3vgz_A           44 YEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLE--VT-QA-IHNDLKPFGATINNTTQTLWFG---NTVNSAVTAI  116 (353)
T ss_dssp             EEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCC--EE-EE-EEESSCCCSEEEETTTTEEEEE---ETTTTEEEEE
T ss_pred             cceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCe--EE-EE-EecCCCcceEEECCCCCEEEEE---ecCCCEEEEE
Confidence            34556777777777653211   25678777665432  22 22 2234567889999999987776   3667899999


Q ss_pred             ecCcccCCCCCccceeeeeeeccCC---------ceEEEEeecCCCCcEEEE-ecCCeEEEEEcCCCCCCceeeecccCC
Q 019059           97 QIPELYGQLNSPQLERIAALDAHVG---------KINCVLWWSSGRHDKLVS-IDEENIFLWSLDCSNKNAQVQSKQSSG  166 (346)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~i~~~~~~~~~~~~~~~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~  166 (346)
                      |..         ..+.+..+..+..         .+.+++|+|+++.++++. +.++.|.+||+.+++....+.     .
T Consensus       117 d~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~-----~  182 (353)
T 3vgz_A          117 DAK---------TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ-----N  182 (353)
T ss_dssp             ETT---------TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC-----C
T ss_pred             eCC---------CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec-----C
Confidence            987         5666666655432         278899999999755555 357899999998665332222     1


Q ss_pred             CceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeec-----cc-eeEEEeCCCCCcEEEEecCCCeEEEEEccc
Q 019059          167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH-----AH-VRNVDYDTKKKHLLVTAADESGIHLWDLRM  240 (346)
Q Consensus       167 ~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-----~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  240 (346)
                      +...+.+++|+|+++.++++..++.|.+||+.+++....+..     .+ +.+++|+|+++.++++...++.|.+||+.+
T Consensus       183 ~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~  262 (353)
T 3vgz_A          183 TGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRN  262 (353)
T ss_dssp             CCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTT
T ss_pred             CCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence            122477899999999999999999999999999887766653     22 888999999985555566669999999987


Q ss_pred             CCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEE
Q 019059          241 LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGL  320 (346)
Q Consensus       241 ~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  320 (346)
                       .+.+..+....  ...++|+|++..++++...++.|.+||..+                   ++.+..+.... .+.++
T Consensus       263 -~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~-------------------~~~~~~~~~~~-~~~~~  319 (353)
T 3vgz_A          263 -GNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKS-------------------YKVVKTFDTPT-HPNSL  319 (353)
T ss_dssp             -CCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTT-------------------TEEEEEEECCS-EEEEE
T ss_pred             -CcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCC-------------------CeEEEEEecCC-CCCeE
Confidence             44565555433  367899999933555555799999999988                   67666665443 57999


Q ss_pred             EeCCCCCcEEEEeec
Q 019059          321 AWSSREPWIFASLSY  335 (346)
Q Consensus       321 ~~~~~~~~~l~s~~~  335 (346)
                      +|+|+++.++++...
T Consensus       320 ~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          320 ALSADGKTLYVSVKQ  334 (353)
T ss_dssp             EECTTSCEEEEEEEC
T ss_pred             EEcCCCCEEEEEEcc
Confidence            999999855555443

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.93  E-value=4.8e-24  Score=199.09  Aligned_cols=289  Identities=11%  Similarity=0.058  Sum_probs=197.5

Q ss_pred             eeEeeeccCCCCcceEEEeecccCC--CCeEEEEEecCCCCeEEEeeeeccc----------------------cceEEe
Q 019059           16 ARCISDVKADTDHTSFLTGTLSLKE--ENEVHLLRLSSGGTELICEGLFSHP----------------------NEIWDL   71 (346)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~g~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~h~----------------------~~v~~~   71 (346)
                      .+.+..+.+++++.+++.+....+.  ...+++|++....... ......+.                      ..|.++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  114 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRL-LVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY  114 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEE-EECGGGTC--------------------CCEESCCC
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeE-ccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence            4456778889999999887532110  1278888876643211 11111111                      348899


Q ss_pred             eecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccce--eeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEE
Q 019059           72 SSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLE--RIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWS  149 (346)
Q Consensus        72 ~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd  149 (346)
                      +|+|+++.|+++.     ++.|.+||+.         ...  ....+..|...+..++|+|||++ ++.+ .++.|++||
T Consensus       115 ~~SpDg~~l~~~~-----~~~i~~~d~~---------~~~~~~~~~l~~~~~~~~~~~~SPDG~~-la~~-~~~~i~~~d  178 (741)
T 2ecf_A          115 QWSPDAQRLLFPL-----GGELYLYDLK---------QEGKAAVRQLTHGEGFATDAKLSPKGGF-VSFI-RGRNLWVID  178 (741)
T ss_dssp             EECTTSSEEEEEE-----TTEEEEEESS---------SCSTTSCCBCCCSSSCEEEEEECTTSSE-EEEE-ETTEEEEEE
T ss_pred             EECCCCCEEEEEe-----CCcEEEEECC---------CCCcceEEEcccCCcccccccCCCCCCE-EEEE-eCCcEEEEe
Confidence            9999999998873     2899999997         331  34456678888999999999995 3333 367999999


Q ss_pred             cCCCCCCceeeecccCCC------------ceeeEEEEeCCCCCcEEEEecCC---------------------------
Q 019059          150 LDCSNKNAQVQSKQSSGM------------LHYLSGGAWDPHDVNAVAATCES---------------------------  190 (346)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~l~~~~~d~---------------------------  190 (346)
                      +.+++.. .+........            ...+..++|+||++.|++++.|+                           
T Consensus       179 ~~~g~~~-~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g  257 (741)
T 2ecf_A          179 LASGRQM-QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAG  257 (741)
T ss_dssp             TTTTEEE-ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTT
T ss_pred             cCCCCEE-EeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCC
Confidence            9865422 1111110000            00147899999999999987665                           


Q ss_pred             ------eEEEEEccC-CCccceeec-cc---eeEEEeCCCCCcEEEEec-----CCCeEEEEEcccCCcceeeecCCCc-
Q 019059          191 ------SVQFWDLRS-MGKTNSIEH-AH---VRNVDYDTKKKHLLVTAA-----DESGIHLWDLRMLKAPIQELPGHTH-  253 (346)
Q Consensus       191 ------~i~i~d~~~-~~~~~~~~~-~~---v~~~~~~~~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~-  253 (346)
                            .|++||+.+ ++....... .+   +..++| |+|+ .|++++     .+..|++||+.+ ......+..+.. 
T Consensus       258 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~-~l~~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~~~  334 (741)
T 2ecf_A          258 DANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQ-HLSFQRQSRDQKKLDLVEVTLAS-NQQRVLAHETSPT  334 (741)
T ss_dssp             SCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETT-EEEEEEEETTSSEEEEEEEETTT-CCEEEEEEEECSS
T ss_pred             CCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCC-EEEEEEecccCCeEEEEEEECCC-CceEEEEEcCCCC
Confidence                  789999988 765443321 22   999999 9999 555433     356899999987 444444444432 


Q ss_pred             ---ceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEE-EeCCCCCcE
Q 019059          254 ---WTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGL-AWSSREPWI  329 (346)
Q Consensus       254 ---~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~  329 (346)
                         .+..++|+|+| +++++++.|+.++||.+..                  .+. ...+..|...|..+ .|+|+++.+
T Consensus       335 ~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~~~------------------~~~-~~~l~~~~~~v~~~~~~s~dg~~l  394 (741)
T 2ecf_A          335 WVPLHNSLRFLDDG-SILWSSERTGFQHLYRIDS------------------KGK-AAALTHGNWSVDELLAVDEKAGLA  394 (741)
T ss_dssp             CCCCCSCCEECTTS-CEEEEECTTSSCEEEEECS------------------SSC-EEESCCSSSCEEEEEEEETTTTEE
T ss_pred             cCCcCCceEECCCC-eEEEEecCCCccEEEEEcC------------------CCC-eeeeeecceEEEeEeEEeCCCCEE
Confidence               45689999999 7999999999888887763                  134 56677777778887 599999855


Q ss_pred             EEEeecCC--eEEEeeec
Q 019059          330 FASLSYDG--RVRNHMLE  345 (346)
Q Consensus       330 l~s~~~d~--~v~vw~~~  345 (346)
                      +++++.++  .++||+++
T Consensus       395 ~~~~~~~~~~~~~l~~~~  412 (741)
T 2ecf_A          395 YFRAGIESARESQIYAVP  412 (741)
T ss_dssp             EEEECSSCTTCBEEEEEE
T ss_pred             EEEEeCCCCceEEEEEEE
Confidence            56666666  89999874

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.93  E-value=3.9e-24  Score=180.63  Aligned_cols=260  Identities=10%  Similarity=0.045  Sum_probs=183.8

Q ss_pred             CCCeEEEEEecCCCCeEEEeeeecccc-ceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeec
Q 019059           40 EENEVHLLRLSSGGTELICEGLFSHPN-EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA  118 (346)
Q Consensus        40 ~~~~i~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~  118 (346)
                      .++.+.+|+....  ........++.. .+..++|+|+++.++++.   ..++.|.+||+.         ..+.+..+..
T Consensus         9 ~~~~v~~~d~~~~--~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~---~~~~~v~~~d~~---------~~~~~~~~~~   74 (337)
T 1pby_B            9 RPDKLVVIDTEKM--AVDKVITIADAGPTPMVPMVAPGGRIAYATV---NKSESLVKIDLV---------TGETLGRIDL   74 (337)
T ss_dssp             TTTEEEEEETTTT--EEEEEEECTTCTTCCCCEEECTTSSEEEEEE---TTTTEEEEEETT---------TCCEEEEEEC
T ss_pred             CCCeEEEEECCCC--cEEEEEEcCCCCCCccceEEcCCCCEEEEEe---CCCCeEEEEECC---------CCCeEeeEEc
Confidence            5688999987653  222222122222 588999999998887763   667899999987         4555555542


Q ss_pred             c-----CCceEEEEeecCCCCcEEEEe-----------cCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCc
Q 019059          119 H-----VGKINCVLWWSSGRHDKLVSI-----------DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVN  182 (346)
Q Consensus       119 ~-----~~~i~~~~~~~~~~~~~~~~~-----------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  182 (346)
                      .     ...+..++|+|+++.++++..           .++.|.+||+.+++....+..      ...+..++|+|+++.
T Consensus        75 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~------~~~~~~~~~s~dg~~  148 (337)
T 1pby_B           75 STPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA------PRQITMLAWARDGSK  148 (337)
T ss_dssp             CBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC------CSSCCCEEECTTSSC
T ss_pred             CCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC------CCCcceeEECCCCCE
Confidence            1     225778999999986444431           479999999986543322221      125678899999998


Q ss_pred             EEEEecCCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCC-----------------------eEEEEEc
Q 019059          183 AVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADES-----------------------GIHLWDL  238 (346)
Q Consensus       183 l~~~~~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg-----------------------~i~i~d~  238 (346)
                      ++++  ++.|++||+.+++....+.... ...+.|+|++..+++++..++                       .|.+||+
T Consensus       149 l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~  226 (337)
T 1pby_B          149 LYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDL  226 (337)
T ss_dssp             EEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEET
T ss_pred             EEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeC
Confidence            8888  6889999999988776665333 345588999985444443443                       4689999


Q ss_pred             ccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceee
Q 019059          239 RMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVY  318 (346)
Q Consensus       239 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  318 (346)
                      ++.......+..+...+.+++|+|++ .+++++  ++.|.+||+.+                   ++.+..+..+ ..+.
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~--~~~v~~~d~~~-------------------~~~~~~~~~~-~~~~  283 (337)
T 1pby_B          227 ETGEMAMREVRIMDVFYFSTAVNPAK-TRAFGA--YNVLESFDLEK-------------------NASIKRVPLP-HSYY  283 (337)
T ss_dssp             TTCCEEEEEEEECSSCEEEEEECTTS-SEEEEE--ESEEEEEETTT-------------------TEEEEEEECS-SCCC
T ss_pred             CCCCceEeecCCCCCceeeEEECCCC-CEEEEe--CCeEEEEECCC-------------------CcCcceecCC-Ccee
Confidence            87432223344566678899999999 888877  78999999987                   6666555433 3478


Q ss_pred             EEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          319 GLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       319 ~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      +++|+|+++ .|++++.++.|++||++
T Consensus       284 ~~~~s~dg~-~l~~~~~~~~i~v~d~~  309 (337)
T 1pby_B          284 SVNVSTDGS-TVWLGGALGDLAAYDAE  309 (337)
T ss_dssp             EEEECTTSC-EEEEESBSSEEEEEETT
T ss_pred             eEEECCCCC-EEEEEcCCCcEEEEECc
Confidence            999999998 66667889999999985

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.93  E-value=3.2e-23  Score=171.52  Aligned_cols=222  Identities=11%  Similarity=0.064  Sum_probs=163.3

Q ss_pred             cCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCC-CCCCceeeecccC
Q 019059           87 TGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDC-SNKNAQVQSKQSS  165 (346)
Q Consensus        87 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~  165 (346)
                      ++.++.|.+||+.         ..+.. .+..|...|.+++|+|++++ ++++ .++.|++||+.+ ++. ......   
T Consensus        18 ~~~~~~i~~~d~~---------~~~~~-~~~~~~~~v~~~~~spdg~~-l~~~-~~~~i~~~d~~~~~~~-~~~~~~---   81 (297)
T 2ojh_A           18 GSMRSSIEIFNIR---------TRKMR-VVWQTPELFEAPNWSPDGKY-LLLN-SEGLLYRLSLAGDPSP-EKVDTG---   81 (297)
T ss_dssp             CCCCEEEEEEETT---------TTEEE-EEEEESSCCEEEEECTTSSE-EEEE-ETTEEEEEESSSCCSC-EECCCT---
T ss_pred             CCcceeEEEEeCC---------CCcee-eeccCCcceEeeEECCCCCE-EEEE-cCCeEEEEeCCCCCCc-eEeccc---
Confidence            4688999999997         44443 45578899999999999994 3333 489999999987 543 222211   


Q ss_pred             CCceeeEEEEeCCCCCcEEEEec--CC--eEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEccc
Q 019059          166 GMLHYLSGGAWDPHDVNAVAATC--ES--SVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRM  240 (346)
Q Consensus       166 ~~~~~v~~~~~~~~~~~l~~~~~--d~--~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  240 (346)
                      .+...+.+++|+|+++.+++++.  ++  .|..+++.+++ ...+.... +..++|+|+++.+++++..++.+++|+++.
T Consensus        82 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~  160 (297)
T 2ojh_A           82 FATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDI  160 (297)
T ss_dssp             TCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred             cccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEEC
Confidence            12347889999999999999883  34  44445555544 33333233 889999999995555888899999999765


Q ss_pred             CCcceeeecCCCcceEEEEeCCCCCcEEEEec-CCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeE
Q 019059          241 LKAPIQELPGHTHWTWAVCCNPEYDGFILSAG-TDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYG  319 (346)
Q Consensus       241 ~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  319 (346)
                      .......+..+...+.++.|+|++ .+|+.++ .|+.++||++..                  ....+..+..|...+..
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~~~~~------------------~~~~~~~~~~~~~~~~~  221 (297)
T 2ojh_A          161 DSGVETRLTHGEGRNDGPDYSPDG-RWIYFNSSRTGQMQIWRVRV------------------DGSSVERITDSAYGDWF  221 (297)
T ss_dssp             TTCCEEECCCSSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEET------------------TSSCEEECCCCSEEEEE
T ss_pred             CCCcceEcccCCCccccceECCCC-CEEEEEecCCCCccEEEECC------------------CCCCcEEEecCCcccCC
Confidence            444566777788899999999999 7666554 689999999873                  14555667777788999


Q ss_pred             EEeCCCCCcEEEEeecC-----------CeEEEeeec
Q 019059          320 LAWSSREPWIFASLSYD-----------GRVRNHMLE  345 (346)
Q Consensus       320 ~~~~~~~~~~l~s~~~d-----------~~v~vw~~~  345 (346)
                      ++|+|+++ .|+.++.+           +.|++|+++
T Consensus       222 ~~~s~dg~-~l~~~~~~~~~~~~~~~~~~~l~~~d~~  257 (297)
T 2ojh_A          222 PHPSPSGD-KVVFVSYDADVFDHPRDLDVRVQLMDMD  257 (297)
T ss_dssp             EEECTTSS-EEEEEEEETTCCSCCSSEEEEEEEEETT
T ss_pred             eEECCCCC-EEEEEEcCCCCCcccccCceEEEEEecC
Confidence            99999998 66666655           569999875

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.93  E-value=4.8e-23  Score=192.32  Aligned_cols=280  Identities=11%  Similarity=0.064  Sum_probs=198.8

Q ss_pred             eeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEec
Q 019059           19 ISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQI   98 (346)
Q Consensus        19 ~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~   98 (346)
                      +..+.+++++..++++..     +.+++|++...... ....+..|...+..++|+|+|+.|+.+     .++.|.+||+
T Consensus       111 v~~~~~SpDg~~l~~~~~-----~~i~~~d~~~~~~~-~~~~l~~~~~~~~~~~~SPDG~~la~~-----~~~~i~~~d~  179 (741)
T 2ecf_A          111 IVDYQWSPDAQRLLFPLG-----GELYLYDLKQEGKA-AVRQLTHGEGFATDAKLSPKGGFVSFI-----RGRNLWVIDL  179 (741)
T ss_dssp             SCCCEECTTSSEEEEEET-----TEEEEEESSSCSTT-SCCBCCCSSSCEEEEEECTTSSEEEEE-----ETTEEEEEET
T ss_pred             cceeEECCCCCEEEEEeC-----CcEEEEECCCCCcc-eEEEcccCCcccccccCCCCCCEEEEE-----eCCcEEEEec
Confidence            567778999999988763     78999998764100 123456788899999999999998886     3458999998


Q ss_pred             CcccCCCCCccceeeeeeeccCCc----------------eEEEEeecCCCCcEEEEecCC-------------------
Q 019059           99 PELYGQLNSPQLERIAALDAHVGK----------------INCVLWWSSGRHDKLVSIDEE-------------------  143 (346)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~----------------i~~~~~~~~~~~~~~~~~~d~-------------------  143 (346)
                      .         ..+.......+...                +..++|+|||+++++++. |+                   
T Consensus       180 ~---------~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~-d~~~~~~~~~~~~~p~~~~~~  249 (741)
T 2ecf_A          180 A---------SGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARI-DESPVPVQKRYEVYADRTDVI  249 (741)
T ss_dssp             T---------TTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEE-ECTTSCEEEEEEECSSCEEEE
T ss_pred             C---------CCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEE-cCCCCceEecCCCCCCcccce
Confidence            7         34443333333322                478999999997444443 33                   


Q ss_pred             --------------eEEEEEcCC-CCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec-----CCeEEEEEccCCCcc
Q 019059          144 --------------NIFLWSLDC-SNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-----ESSVQFWDLRSMGKT  203 (346)
Q Consensus       144 --------------~i~vwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~i~d~~~~~~~  203 (346)
                                    .|.+||+.+ ++. ..+...  ..+...+..++| ||++.|++++.     +..|++||+.+++..
T Consensus       250 ~~~~~~~g~~~~~~~l~~~d~~~~~~~-~~~~~~--~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~  325 (741)
T 2ecf_A          250 EQRYPAAGDANVQVKLGVISPAEQAQT-QWIDLG--KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQR  325 (741)
T ss_dssp             EEECCBTTSCCCEEEEEEECSSTTCCC-EEECCC--SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEE
T ss_pred             EeecCCCCCCCCeeEEEEEECCCCCce-EEecCC--CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceE
Confidence                          788899886 542 222111  135668999999 99999987764     568999999998866


Q ss_pred             ceeeccc------eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEE-EeCCCCCcEE-EEecCCC
Q 019059          204 NSIEHAH------VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAV-CCNPEYDGFI-LSAGTDS  275 (346)
Q Consensus       204 ~~~~~~~------v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v-~~~~~~~~~l-~s~~~d~  275 (346)
                      ..+....      +..++|+|+++ ++++++.++.+++|.+..... ...+..|...+..+ .|+|++ ..| ++++.++
T Consensus       326 ~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg-~~l~~~~~~~~  402 (741)
T 2ecf_A          326 VLAHETSPTWVPLHNSLRFLDDGS-ILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKA-GLAYFRAGIES  402 (741)
T ss_dssp             EEEEEECSSCCCCCSCCEECTTSC-EEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTT-TEEEEEECSSC
T ss_pred             EEEEcCCCCcCCcCCceEECCCCe-EEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCC-CEEEEEEeCCC
Confidence            5544221      35899999998 888999999888887764344 77777888888887 599999 555 5666666


Q ss_pred             --eEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecC---CeEEEeeec
Q 019059          276 --TVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYD---GRVRNHMLE  345 (346)
Q Consensus       276 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---~~v~vw~~~  345 (346)
                        .++||++..                  .+.....+.. ...+.+++|+|+++.++++.+..   ..+.+|+++
T Consensus       403 ~~~~~l~~~~~------------------~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~  458 (741)
T 2ecf_A          403 ARESQIYAVPL------------------QGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRAN  458 (741)
T ss_dssp             TTCBEEEEEET------------------TCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETT
T ss_pred             CceEEEEEEEc------------------CCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcC
Confidence              899999875                  1333444544 44578999999998555555543   357777653

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.92  E-value=3.7e-23  Score=175.91  Aligned_cols=248  Identities=8%  Similarity=-0.020  Sum_probs=184.2

Q ss_pred             cccceEEeeecCCCCceEEEEeecC---CcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEe
Q 019059           64 HPNEIWDLSSCPFDQRIFSTVFSTG---ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI  140 (346)
Q Consensus        64 h~~~v~~~~~~~~~~~l~~~~~~~~---~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  140 (346)
                      ....+..++|+|+++.++++...+.   .++.|.+||..         ..+.+..+.. ...+..++|+|+++.++++..
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~---------~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~  108 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPV---------TLEVTQAIHN-DLKPFGATINNTTQTLWFGNT  108 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTT---------TCCEEEEEEE-SSCCCSEEEETTTTEEEEEET
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCC---------CCeEEEEEec-CCCcceEEECCCCCEEEEEec
Confidence            4467889999999998887642111   27799999987         5666666644 345788999999997566666


Q ss_pred             cCCeEEEEEcCCCCCCceeeecccC----CCceeeEEEEeCCCCCcEEEEe--cCCeEEEEEccCCCccceee-ccc-ee
Q 019059          141 DEENIFLWSLDCSNKNAQVQSKQSS----GMLHYLSGGAWDPHDVNAVAAT--CESSVQFWDLRSMGKTNSIE-HAH-VR  212 (346)
Q Consensus       141 ~d~~i~vwd~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~-~~~-v~  212 (346)
                      .++.|.+||..+++....+......    .....+.+++|+|+++.+++++  .++.|.+||+.+++....+. .+. +.
T Consensus       109 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~  188 (353)
T 3vgz_A          109 VNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMST  188 (353)
T ss_dssp             TTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCC
T ss_pred             CCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccc
Confidence            6899999999877644333321100    0011368899999999888776  47899999999998877776 344 89


Q ss_pred             EEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecC----CCcceEEEEeCCCCCcEEEEe-cCCCeEEEEecCCCCC
Q 019059          213 NVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG----HTHWTWAVCCNPEYDGFILSA-GTDSTVNLWLVSTSNH  287 (346)
Q Consensus       213 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~v~~v~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~  287 (346)
                      +++|+|+++ .+++++.++.|.+||+.+ .+.+..+..    +...+..++|+|++ .+++++ ..++.|.+||..+   
T Consensus       189 ~~~~s~dg~-~l~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~v~~~d~~~---  262 (353)
T 3vgz_A          189 GLALDSEGK-RLYTTNADGELITIDTAD-NKILSRKKLLDDGKEHFFINISLDTAR-QRAFITDSKAAEVLVVDTRN---  262 (353)
T ss_dssp             CCEEETTTT-EEEEECTTSEEEEEETTT-TEEEEEEECCCSSSCCCEEEEEEETTT-TEEEEEESSSSEEEEEETTT---
T ss_pred             eEEECCCCC-EEEEEcCCCeEEEEECCC-CeEEEEEEcCCCCCCcccceEEECCCC-CEEEEEeCCCCEEEEEECCC---
Confidence            999999998 777778899999999987 445555543    45567889999999 655554 4569999999987   


Q ss_pred             CCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          288 DELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                                      ++.+..+....  ...++|+|+++.++++...++.|.+||++
T Consensus       263 ----------------~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~  302 (353)
T 3vgz_A          263 ----------------GNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAK  302 (353)
T ss_dssp             ----------------CCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             ----------------CcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECC
Confidence                            66655554433  26799999998666777689999999975

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.92  E-value=2.2e-22  Score=170.25  Aligned_cols=247  Identities=11%  Similarity=0.154  Sum_probs=166.4

Q ss_pred             eeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEE-EeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEec
Q 019059           20 SDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELI-CEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQI   98 (346)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~   98 (346)
                      ..+.+++++..++++..   .++.+.+|++........ ...+.. ...+..++|+|+++.++++.   ..++.|.+|++
T Consensus        41 ~~~~~spdg~~l~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~---~~~~~i~~~d~  113 (343)
T 1ri6_A           41 QPMVVSPDKRYLYVGVR---PEFRVLAYRIAPDDGALTFAAESAL-PGSLTHISTDHQGQFVFVGS---YNAGNVSVTRL  113 (343)
T ss_dssp             CCEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEEC-SSCCSEEEECTTSSEEEEEE---TTTTEEEEEEE
T ss_pred             ceEEECCCCCEEEEeec---CCCeEEEEEecCCCCceeecccccc-CCCCcEEEEcCCCCEEEEEe---cCCCeEEEEEC
Confidence            34557778877777643   248999999985433332 233333 34889999999999887763   55789999998


Q ss_pred             CcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceee--ecccCCCceeeEEEEe
Q 019059           99 PELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQ--SKQSSGMLHYLSGGAW  176 (346)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~--~~~~~~~~~~v~~~~~  176 (346)
                      ..      ....+....+.. ...+.+++|+|+++.+++++..++.|.+||+.+........  ... ......+..++|
T Consensus       114 ~~------~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  185 (343)
T 1ri6_A          114 ED------GLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVT-TVEGAGPRHMVF  185 (343)
T ss_dssp             ET------TEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEE-CSTTCCEEEEEE
T ss_pred             CC------CccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccc-cCCCCCcceEEE
Confidence            31      013445555543 34588999999999644444478999999998633222211  111 111236778999


Q ss_pred             CCCCCcEEEEe-cCCeEEEEEccC--CCc--ccee---ecc----c-eeEEEeCCCCCcEEEEecCCCeEEEEEcccC--
Q 019059          177 DPHDVNAVAAT-CESSVQFWDLRS--MGK--TNSI---EHA----H-VRNVDYDTKKKHLLVTAADESGIHLWDLRML--  241 (346)
Q Consensus       177 ~~~~~~l~~~~-~d~~i~i~d~~~--~~~--~~~~---~~~----~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--  241 (346)
                      +|+++.+++++ .++.|.+||+..  ++.  ...+   ..+    . +..++|+|+++.+++++..++.|.+||+...  
T Consensus       186 ~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~  265 (343)
T 1ri6_A          186 HPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGS  265 (343)
T ss_dssp             CTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC
T ss_pred             CCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCC
Confidence            99999887666 689999999964  332  1111   111    1 6689999999856667778999999999831  


Q ss_pred             -CcceeeecCCCcceEEEEeCCCCCcEEEEec-CCCeEEEEecC
Q 019059          242 -KAPIQELPGHTHWTWAVCCNPEYDGFILSAG-TDSTVNLWLVS  283 (346)
Q Consensus       242 -~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~-~d~~i~iwd~~  283 (346)
                       ...+..+..+.. +..++|+|++ .+|++++ .++.|.+|++.
T Consensus       266 ~~~~~~~~~~~~~-~~~~~~s~dg-~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          266 VLSKEGFQPTETQ-PRGFNVDHSG-KYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             CEEEEEEEECSSS-CCCEEECTTS-SEEEEECTTTCEEEEEEEE
T ss_pred             ceEEeeeecCCCc-cceEEECCCC-CEEEEecCCCCeEEEEEEc
Confidence             123444444444 8899999999 7666666 68999999665

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.91  E-value=3.5e-22  Score=170.76  Aligned_cols=282  Identities=10%  Similarity=0.027  Sum_probs=178.9

Q ss_pred             ceEEEeecccCCCCeEEEEEecCCCCeEEEeeee--ccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCC
Q 019059           29 TSFLTGTLSLKEENEVHLLRLSSGGTELICEGLF--SHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLN  106 (346)
Q Consensus        29 ~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~  106 (346)
                      ..+++|+++.  .+.|++++++.....+......  .....+..++|+|+++.|+++.    .+ .|.+|++..      
T Consensus         3 ~~~~vg~~~~--~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~----~~-~v~~~~~~~------   69 (365)
T 1jof_A            3 HHLMIGTWTP--PGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAA----MK-KWSSFAVKS------   69 (365)
T ss_dssp             EEEEEEESSS--SCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEE----BT-EEEEEEEEE------
T ss_pred             EEEEEEEccC--CCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEc----cc-eEEEEEECC------
Confidence            4577787653  2579999998766555433221  2335688999999999887763    44 899999851      


Q ss_pred             Cccceeeeeeec-cCCceEEEEeecCCCCcEE-EEe-------------cCCeEEEEEcCCCCCCceeeecccCCCceee
Q 019059          107 SPQLERIAALDA-HVGKINCVLWWSSGRHDKL-VSI-------------DEENIFLWSLDCSNKNAQVQSKQSSGMLHYL  171 (346)
Q Consensus       107 ~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~-~~~-------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v  171 (346)
                        .++....... ..+...+++|+|+|+++++ ++.             .++.+.+|++................+...+
T Consensus        70 --~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~  147 (365)
T 1jof_A           70 --PTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGI  147 (365)
T ss_dssp             --TTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCE
T ss_pred             --CCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcc
Confidence              1233222211 1123566899999985333 332             5889999999743222221111000123368


Q ss_pred             EEEEeCCCCCcEEEEec-CCeEEEEEcc-CCCcc--ceee--c-cc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccC-C
Q 019059          172 SGGAWDPHDVNAVAATC-ESSVQFWDLR-SMGKT--NSIE--H-AH-VRNVDYDTKKKHLLVTAADESGIHLWDLRML-K  242 (346)
Q Consensus       172 ~~~~~~~~~~~l~~~~~-d~~i~i~d~~-~~~~~--~~~~--~-~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~  242 (346)
                      .+++|+|+++.++++.. ++.|++||+. +++..  ..+.  . +. +..++|+|+++.++++...++.|.+|++... +
T Consensus       148 ~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g  227 (365)
T 1jof_A          148 HGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATH  227 (365)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred             eEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCC
Confidence            89999999998887764 6799999998 66542  2232  1 33 9999999999844444445789999987531 2


Q ss_pred             cce------eeec----CCCc------ceEEEE-eCCCCCcEEEEecCC-C-----eEEEEecCCCCCCCCCcccccCCc
Q 019059          243 API------QELP----GHTH------WTWAVC-CNPEYDGFILSAGTD-S-----TVNLWLVSTSNHDELPSESLVESP  299 (346)
Q Consensus       243 ~~~------~~~~----~~~~------~v~~v~-~~~~~~~~l~s~~~d-~-----~i~iwd~~~~~~~~~~~~~~~~~~  299 (346)
                      ...      ..+.    +|..      .+..++ |+|+| ++|++++.+ +     .|.+|++..               
T Consensus       228 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG-~~l~v~~~~~~~~~~~~i~v~~~~~---------------  291 (365)
T 1jof_A          228 MPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG-KYMFASSRANKFELQGYIAGFKLRD---------------  291 (365)
T ss_dssp             CEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS-SEEEEEEEESSTTSCCEEEEEEECT---------------
T ss_pred             cEEEccceEEcCCCCcCCcccccccccccccEEEECCCC-CEEEEECCCCCCCCCCeEEEEEECC---------------
Confidence            221      1121    1222      588999 99999 777766543 2     899999963               


Q ss_pred             ccccccccc---ccccccceeeEEEeCC---CCCcEEEEeec-CCeEEEeeec
Q 019059          300 NQRANSLLN---SYSDYEDSVYGLAWSS---REPWIFASLSY-DGRVRNHMLE  345 (346)
Q Consensus       300 ~~~~~~~~~---~~~~~~~~v~~~~~~~---~~~~~l~s~~~-d~~v~vw~~~  345 (346)
                         .++...   ....+...+..++|+|   +++ +|++++. ++.|++|+++
T Consensus       292 ---~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~-~l~v~~~~~~~v~v~~~~  340 (365)
T 1jof_A          292 ---CGSIEKQLFLSPTPTSGGHSNAVSPCPWSDE-WMAITDDQEGWLEIYRWK  340 (365)
T ss_dssp             ---TSCEEEEEEEEECSSCCTTCCCEEECTTCTT-EEEEECSSSCEEEEEEEE
T ss_pred             ---CCCEEEeeeeeecCCCCcccceecCCCcCCC-EEEEEEcCCCeEEEEEEc
Confidence               033322   1222344567899999   787 5666654 5999999875

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.91  E-value=8.2e-23  Score=189.75  Aligned_cols=241  Identities=11%  Similarity=0.083  Sum_probs=168.4

Q ss_pred             cceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeE
Q 019059           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENI  145 (346)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i  145 (346)
                      ..|.+++|+|+ +.++++     .++.|.+||+.         ..+. ..+..+...+.+++|+|||+. ++. ..++.|
T Consensus        82 ~~v~~~~~spd-~~~~~~-----~~~~i~~~d~~---------~~~~-~~l~~~~~~~~~~~~SpdG~~-la~-~~~~~i  143 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLF-----TQGGLVGFDML---------ARKV-TYLFDTNEETASLDFSPVGDR-VAY-VRNHNL  143 (706)
T ss_dssp             CCCEEEEETTT-TEEEEE-----ETTEEEEEETT---------TTEE-EEEECCTTCCTTCEECTTSSE-EEE-EETTEE
T ss_pred             cCceeEEECCC-CeEEEE-----ECCEEEEEECC---------CCce-EEccCCcccccCCcCCCCCCE-EEE-EECCeE
Confidence            46999999999 777665     34899999997         4443 344456778899999999995 333 468999


Q ss_pred             EEEEcCC-----CCCCceeeecccCC----------CceeeEEEEeCCCCCcEEEEe-----------------------
Q 019059          146 FLWSLDC-----SNKNAQVQSKQSSG----------MLHYLSGGAWDPHDVNAVAAT-----------------------  187 (346)
Q Consensus       146 ~vwd~~~-----~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~~~~-----------------------  187 (346)
                      ++||+.+     ++.. .+.......          +...+.+++|+||++.|++++                       
T Consensus       144 ~v~~~~~~~~~~g~~~-~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~  222 (706)
T 2z3z_A          144 YIARGGKLGEGMSRAI-AVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKP  222 (706)
T ss_dssp             EEEECBCTTSCCCCCE-ESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEE
T ss_pred             EEEecCcccccCCCcE-EeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEE
Confidence            9999987     5432 111111000          001257899999999999887                       


Q ss_pred             ----------cCCeEEEEEccCCCccceeec-cc---eeEEEeCCCCCcEEEEecCCC-----eEEEEEcccCCcceeee
Q 019059          188 ----------CESSVQFWDLRSMGKTNSIEH-AH---VRNVDYDTKKKHLLVTAADES-----GIHLWDLRMLKAPIQEL  248 (346)
Q Consensus       188 ----------~d~~i~i~d~~~~~~~~~~~~-~~---v~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~  248 (346)
                                .+..|++||+.+++....... .+   +.+++|+|+++ .+++++.++     .|++||+.+........
T Consensus       223 ~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~  301 (706)
T 2z3z_A          223 LYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDEN-ILYVAEVNRAQNECKVNAYDAETGRFVRTLF  301 (706)
T ss_dssp             ECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSS-EEEEEEECTTSCEEEEEEEETTTCCEEEEEE
T ss_pred             eeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCC-EEEEEEeCCCCCeeEEEEEECCCCceeeEEE
Confidence                      346799999998875433321 22   89999999998 666665554     89999998732222222


Q ss_pred             c-CCCc---ceEEEEeCC--CCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeE-EE
Q 019059          249 P-GHTH---WTWAVCCNP--EYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYG-LA  321 (346)
Q Consensus       249 ~-~~~~---~v~~v~~~~--~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~  321 (346)
                      . .+..   .+..+.|+|  +| .++++++.|+.++||++..                  .+..+..+..+...+.+ ++
T Consensus       302 ~~~~~~~~~~~~~~~~sp~~dg-~~l~~~~~~g~~~l~~~~~------------------~~~~~~~l~~~~~~v~~~~~  362 (706)
T 2z3z_A          302 VETDKHYVEPLHPLTFLPGSNN-QFIWQSRRDGWNHLYLYDT------------------TGRLIRQVTKGEWEVTNFAG  362 (706)
T ss_dssp             EEECSSCCCCCSCCEECTTCSS-EEEEEECTTSSCEEEEEET------------------TSCEEEECCCSSSCEEEEEE
T ss_pred             EccCCCeECccCCceeecCCCC-EEEEEEccCCccEEEEEEC------------------CCCEEEecCCCCeEEEeeeE
Confidence            1 1222   246789999  99 8999999999999998863                  14556667777777776 89


Q ss_pred             eCCCCCcEEEEeecCC----eEEEeeec
Q 019059          322 WSSREPWIFASLSYDG----RVRNHMLE  345 (346)
Q Consensus       322 ~~~~~~~~l~s~~~d~----~v~vw~~~  345 (346)
                      |+|+++.++++++.++    .|..|+++
T Consensus       363 ~spdg~~l~~~~~~~~~~~~~l~~~d~~  390 (706)
T 2z3z_A          363 FDPKGTRLYFESTEASPLERHFYCIDIK  390 (706)
T ss_dssp             ECTTSSEEEEEESSSCTTCBEEEEEETT
T ss_pred             EcCCCCEEEEEecCCCCceEEEEEEEcC
Confidence            9999985666666655    56666653

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.91  E-value=2.1e-22  Score=187.55  Aligned_cols=285  Identities=14%  Similarity=0.102  Sum_probs=181.9

Q ss_pred             eeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeecccc---ceEEeeecCCCCceEEEEeecC-----Cc
Q 019059           19 ISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPN---EIWDLSSCPFDQRIFSTVFSTG-----ES   90 (346)
Q Consensus        19 ~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~l~~~~~~~~-----~d   90 (346)
                      ...+.+++++..+ ..    ..++.+++|+.......   ..+..|..   .|.+++||||+++|+++.....     .+
T Consensus        19 ~~~~~~spdg~~~-~~----~~dg~i~~~d~~~g~~~---~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~   90 (723)
T 1xfd_A           19 DPEAKWISDTEFI-YR----EQKGTVRLWNVETNTST---VLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYT   90 (723)
T ss_dssp             CCCCCBSSSSCBC-CC----CSSSCEEEBCGGGCCCE---EEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCC
T ss_pred             ccccEEcCCCcEE-EE----eCCCCEEEEECCCCcEE---EEeccccccccccceEEECCCCCEEEEEecCccceeecce
Confidence            3456677777633 22    35678999988765432   23334443   4999999999999988742111     13


Q ss_pred             ceEEEEecCcccCCCCCcccee--eeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCC-
Q 019059           91 YGAAIWQIPELYGQLNSPQLER--IAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGM-  167 (346)
Q Consensus        91 ~~i~vw~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~-  167 (346)
                      +.+.+||+.         .++.  +.....|...+..++|+|||+. ++.++ ++.|++||+.+++.. .+........ 
T Consensus        91 ~~i~~~d~~---------~~~~~~l~~~~~~~~~~~~~~~SPdG~~-la~~~-~~~i~~~~~~~g~~~-~~~~~~~~~~~  158 (723)
T 1xfd_A           91 GYYVLSKIP---------HGDPQSLDPPEVSNAKLQYAGWGPKGQQ-LIFIF-ENNIYYCAHVGKQAI-RVVSTGKEGVI  158 (723)
T ss_dssp             SEEEEEESS---------SCCCEECCCTTCCSCCCSBCCBCSSTTC-EEEEE-TTEEEEESSSSSCCE-EEECCCBTTTE
T ss_pred             eeEEEEECC---------CCceEeccCCccccccccccEECCCCCE-EEEEE-CCeEEEEECCCCceE-EEecCCCCCce
Confidence            789999997         3332  3333345556889999999996 33333 589999999876532 2221111100 


Q ss_pred             -------------ceeeEEEEeCCCCCcEEEEecCC----------------------------------eEEEEEccCC
Q 019059          168 -------------LHYLSGGAWDPHDVNAVAATCES----------------------------------SVQFWDLRSM  200 (346)
Q Consensus       168 -------------~~~v~~~~~~~~~~~l~~~~~d~----------------------------------~i~i~d~~~~  200 (346)
                                   ...+.+++|+||++.|++++.++                                  .|++||+.++
T Consensus       159 ~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~  238 (723)
T 1xfd_A          159 YNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGP  238 (723)
T ss_dssp             EEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSS
T ss_pred             ECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCC
Confidence                         01237899999999999887542                                  7999999988


Q ss_pred             Cccceeec-------cc-eeEEEeCCCCCcEEEEec----CCCeEEEEEcccCCcceeeecC-CCcce----EEEEeCCC
Q 019059          201 GKTNSIEH-------AH-VRNVDYDTKKKHLLVTAA----DESGIHLWDLRMLKAPIQELPG-HTHWT----WAVCCNPE  263 (346)
Q Consensus       201 ~~~~~~~~-------~~-v~~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~~~~~~~~-~~~~v----~~v~~~~~  263 (346)
                      +....+..       .. +..++|+|+|+ ++++..    .+..|++||+.+ ++....+.. +...+    ..++|+|+
T Consensus       239 ~~~~~l~~~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~~~~~~~~~spd  316 (723)
T 1xfd_A          239 THDLEMMPPDDPRMREYYITMVKWATSTK-VAVTWLNRAQNVSILTLCDATT-GVCTKKHEDESEAWLHRQNEEPVFSKD  316 (723)
T ss_dssp             CCCEECCCCCCGGGSSEEEEEEEESSSSE-EEEEEEETTSCEEEEEEEETTT-CCEEEEEEEECSSCCCCCCCCCEECTT
T ss_pred             ceeEEeeCCccCCCccceeEEEEEeCCCe-EEEEEEcCCCCeEEEEEEeCCC-CcceEEEEeccCCEEeccCCCceEcCC
Confidence            76444442       12 89999999998 665543    235799999986 434443332 33444    37899999


Q ss_pred             CCcEEEE--ecCCC------eEEEEec-CCCCCCCCCcccccCCccccccc--cccccccccceeeE-EEeCCCCCcEEE
Q 019059          264 YDGFILS--AGTDS------TVNLWLV-STSNHDELPSESLVESPNQRANS--LLNSYSDYEDSVYG-LAWSSREPWIFA  331 (346)
Q Consensus       264 ~~~~l~s--~~~d~------~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~-~~~~~~~~~~l~  331 (346)
                      | +.|+.  ...++      .|.+||. ..                   +.  +...+..+...+.. ++|+|+++.+++
T Consensus       317 g-~~l~~~~~~~~~~~~~~~~l~~~d~~~~-------------------~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~  376 (723)
T 1xfd_A          317 G-RKFFFIRAIPQGGRGKFYHITVSSSQPN-------------------SSNDNIQSITSGDWDVTKILAYDEKGNKIYF  376 (723)
T ss_dssp             S-CSEEEEEEECCSSSSCEEEEEEECSSCC-------------------SSSCCCCBSCCSSSCEEEEEEEETTTTEEEE
T ss_pred             C-CeEEEEEecccCCCcceeEEEEEeccCC-------------------CCccceeEeecCCeEEEeeeEEcCCCCEEEE
Confidence            9 65553  55677      4666663 33                   22  13444433333444 699999984444


Q ss_pred             EeecC--CeEEEeeec
Q 019059          332 SLSYD--GRVRNHMLE  345 (346)
Q Consensus       332 s~~~d--~~v~vw~~~  345 (346)
                      ++..+  +.+++|+++
T Consensus       377 ~~~~~~~~~~~l~~~~  392 (723)
T 1xfd_A          377 LSTEDLPRRRQLYSAN  392 (723)
T ss_dssp             EESSSCTTCCEEEEEC
T ss_pred             EEcCCCCcceEEEEEe
Confidence            44544  789999874

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.91  E-value=1.4e-21  Score=181.93  Aligned_cols=286  Identities=11%  Similarity=0.035  Sum_probs=184.2

Q ss_pred             eeeccCCCCcceEEEeecccC-----CCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceE
Q 019059           19 ISDVKADTDHTSFLTGTLSLK-----EENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGA   93 (346)
Q Consensus        19 ~~~~~~~~~~~~~~~g~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i   93 (346)
                      +..+.+++++.+++.+.....     ..+.+++|++..... .......+|...+..++|||+|+.|+.+     .++.|
T Consensus        63 v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~-----~~~~i  136 (723)
T 1xfd_A           63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFI-----FENNI  136 (723)
T ss_dssp             CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEE-----ETTEE
T ss_pred             cceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEE-----ECCeE
Confidence            455678899998888754222     237899999877543 2222233455568999999999999986     33689


Q ss_pred             EEEecCcccCCCCCccceeeeeeeccCCc------------------eEEEEeecCCCCcEEEEecC-------------
Q 019059           94 AIWQIPELYGQLNSPQLERIAALDAHVGK------------------INCVLWWSSGRHDKLVSIDE-------------  142 (346)
Q Consensus        94 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~------------------i~~~~~~~~~~~~~~~~~~d-------------  142 (346)
                      .+|++.         .++.......+...                  +.+++|+|||+.+++++..+             
T Consensus       137 ~~~~~~---------~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~  207 (723)
T 1xfd_A          137 YYCAHV---------GKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTG  207 (723)
T ss_dssp             EEESSS---------SSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSS
T ss_pred             EEEECC---------CCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCC
Confidence            999987         34443333333332                  37899999999644444322             


Q ss_pred             --------------------CeEEEEEcCCCCCCceeeec-ccCCCceeeEEEEeCCCCCcEEEEec----CCeEEEEEc
Q 019059          143 --------------------ENIFLWSLDCSNKNAQVQSK-QSSGMLHYLSGGAWDPHDVNAVAATC----ESSVQFWDL  197 (346)
Q Consensus       143 --------------------~~i~vwd~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~i~d~  197 (346)
                                          ..|++||+.+++....+... ....+...+..++|+||++.+++...    +..|++||+
T Consensus       208 ~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~  287 (723)
T 1xfd_A          208 SIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDA  287 (723)
T ss_dssp             SSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEET
T ss_pred             cCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeC
Confidence                                17899999876532322211 01112457899999999998876653    357999999


Q ss_pred             cCCCccceeeccc---e----eEEEeCCCCCcEEEE-ecCCC------eEEEEEcccCCc--ceeeecCCCcceEE-EEe
Q 019059          198 RSMGKTNSIEHAH---V----RNVDYDTKKKHLLVT-AADES------GIHLWDLRMLKA--PIQELPGHTHWTWA-VCC  260 (346)
Q Consensus       198 ~~~~~~~~~~~~~---v----~~~~~~~~~~~~l~~-~~~dg------~i~i~d~~~~~~--~~~~~~~~~~~v~~-v~~  260 (346)
                      .+++....+...+   +    ..++|+|+|+.+++. +..++      .|.+||+...+.  ....+..+...+.. ++|
T Consensus       288 ~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~  367 (723)
T 1xfd_A          288 TTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAY  367 (723)
T ss_dssp             TTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEE
T ss_pred             CCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEE
Confidence            9988665543222   3    389999999855544 55667      466666323232  14555544444554 689


Q ss_pred             CCCCCcEEEEe-cCC--CeEEEEecCCCCCCCCCcccccCCcccccccccccccc---ccceeeEEEeCCCCCcEEEEee
Q 019059          261 NPEYDGFILSA-GTD--STVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD---YEDSVYGLAWSSREPWIFASLS  334 (346)
Q Consensus       261 ~~~~~~~l~s~-~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~s~~  334 (346)
                      +|+| +.|+.. ..+  +.++||++....                 ......+..   |...+..++|+|+++.+++..+
T Consensus       368 spdg-~~l~~~~~~~~~~~~~l~~~~~~~-----------------~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~  429 (723)
T 1xfd_A          368 DEKG-NKIYFLSTEDLPRRRQLYSANTVG-----------------NFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCE  429 (723)
T ss_dssp             ETTT-TEEEEEESSSCTTCCEEEEECSST-----------------TCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred             cCCC-CEEEEEEcCCCCcceEEEEEeCCC-----------------CCCcceecccccCCCCeEEEEECCCCCEEEEEcc
Confidence            9999 777654 444  789999987510                 112223332   5666889999999985555555


Q ss_pred             cCC
Q 019059          335 YDG  337 (346)
Q Consensus       335 ~d~  337 (346)
                      ...
T Consensus       430 ~~~  432 (723)
T 1xfd_A          430 GPG  432 (723)
T ss_dssp             SSS
T ss_pred             CCC
Confidence            443

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.90  E-value=4.9e-23  Score=186.98  Aligned_cols=233  Identities=9%  Similarity=-0.017  Sum_probs=170.1

Q ss_pred             ccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccC-CceEEEEeecCCCCcEEEEec--
Q 019059           65 PNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV-GKINCVLWWSSGRHDKLVSID--  141 (346)
Q Consensus        65 ~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~--  141 (346)
                      ..+|++++|+|||+.|+.+.   ..|++++||+++         .++. ..+..|. ..+..+.|+|| + +++++..  
T Consensus        21 ~~~~~~~~~~~DG~~la~~s---~~~g~~~lw~~~---------~g~~-~~lt~~~~~~~~~~~~spd-~-~l~~~~~~~   85 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVG---FSEGSVNAYLYD---------GGET-VKLNREPINSVLDPHYGVG-R-VILVRDVSK   85 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEE---EETTEEEEEEEE---------TTEE-EECCSSCCSEECEECTTCS-E-EEEEEECST
T ss_pred             ccchheeecCCCCCeEEEEE---ccCCceeEEEEc---------CCCc-EeeecccccccccccCCCC-e-EEEEeccCC
Confidence            46799999999999998863   348899999986         3444 3444555 68999999999 4 4555543  


Q ss_pred             -CCeEEEEEcCC--CCCCceeeecccCCCceeeEEEEeCCCCCcE-EEEecCCeEEEEEccCCCccceeeccceeEEEeC
Q 019059          142 -EENIFLWSLDC--SNKNAQVQSKQSSGMLHYLSGGAWDPHDVNA-VAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYD  217 (346)
Q Consensus       142 -d~~i~vwd~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~v~~~~~~  217 (346)
                       +....+|.+..  ......+  ....    .....+|+|+++.+ ++.+.++.+.+||+.+++........ ..+++|+
T Consensus        86 g~~~~~l~~~~~~~~g~~~~l--~~~~----~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~-~~~~~~s  158 (582)
T 3o4h_A           86 GAEQHALFKVNTSRPGEEQRL--EAVK----PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP-GFGFVSD  158 (582)
T ss_dssp             TSCCEEEEEEETTSTTCCEEC--TTSC----SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES-SCEEEEE
T ss_pred             CCcceEEEEEeccCCCccccc--cCCC----CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC-CceEEEC
Confidence             45566766553  2222211  1111    23355788888754 34444556669999988654433322 4789999


Q ss_pred             CCCCcEEEEecCC----CeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCC--eEEEEecCCCCCCCCC
Q 019059          218 TKKKHLLVTAADE----SGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDS--TVNLWLVSTSNHDELP  291 (346)
Q Consensus       218 ~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~  291 (346)
                      |||+ .+++++.+    +.|++||+.. + ....+..|...+..++|+||| +.|+++..++  .|++||+.+       
T Consensus       159 pDG~-~la~~~~~~~~~~~i~~~d~~~-g-~~~~l~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~i~~~d~~~-------  227 (582)
T 3o4h_A          159 IRGD-LIAGLGFFGGGRVSLFTSNLSS-G-GLRVFDSGEGSFSSASISPGM-KVTAGLETAREARLVTVDPRD-------  227 (582)
T ss_dssp             EETT-EEEEEEEEETTEEEEEEEETTT-C-CCEEECCSSCEEEEEEECTTS-CEEEEEECSSCEEEEEECTTT-------
T ss_pred             CCCC-EEEEEEEcCCCCeEEEEEcCCC-C-CceEeecCCCccccceECCCC-CEEEEccCCCeeEEEEEcCCC-------
Confidence            9999 77766655    6799999886 3 345777888899999999999 8898888888  899999987       


Q ss_pred             cccccCCccccccccccccccccceeeEEE--------eCCCCCcEEEEeecCCeEEEeee
Q 019059          292 SESLVESPNQRANSLLNSYSDYEDSVYGLA--------WSSREPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~~l~s~~~d~~v~vw~~  344 (346)
                                  ++.. .+.+|...+..++        |+|+| .++++++.|+.+++|++
T Consensus       228 ------------~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          228 ------------GSVE-DLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFID  274 (582)
T ss_dssp             ------------CCEE-ECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET
T ss_pred             ------------CcEE-EccCCCcChhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE
Confidence                        5555 6667776677777        99999 59999999999999986

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.90  E-value=3e-23  Score=180.93  Aligned_cols=202  Identities=12%  Similarity=0.105  Sum_probs=142.8

Q ss_pred             CceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCC-------Cceeeecc---cCCCceeeEEEEeCCCCCcEE----EE
Q 019059          121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNK-------NAQVQSKQ---SSGMLHYLSGGAWDPHDVNAV----AA  186 (346)
Q Consensus       121 ~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~-------~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~----~~  186 (346)
                      ..+..+++++++.. +++++.++ +++|+......       ........   ...+...+.+++|+|++++|+    ++
T Consensus        37 ~~~n~lavs~~~~~-l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg  114 (434)
T 2oit_A           37 ERSSLLAVSNKYGL-VFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS  114 (434)
T ss_dssp             SCCBCEEEETTTTE-EEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred             CCccEEEEecCCCE-EEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence            45788999998883 55556565 89987642110       00111000   011334699999999999999    56


Q ss_pred             ecCCeEEEEEccCC--------Cccceee--ccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCc
Q 019059          187 TCESSVQFWDLRSM--------GKTNSIE--HAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTH  253 (346)
Q Consensus       187 ~~d~~i~i~d~~~~--------~~~~~~~--~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  253 (346)
                      +.|+.|++||++++        +.+..+.  .+|   |.+++|+|++..+|++++.||+|++||+++. ..+....+|..
T Consensus       115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~-~~~~~~~~~~~  193 (434)
T 2oit_A          115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET-VKVCATLPSTV  193 (434)
T ss_dssp             TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS-EEEEEEECGGG
T ss_pred             CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC-cceeeccCCCC
Confidence            67999999999765        2222222  234   9999999984449999999999999999974 44555667889


Q ss_pred             ceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccc-------ccccceeeEEEeCCCC
Q 019059          254 WTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSY-------SDYEDSVYGLAWSSRE  326 (346)
Q Consensus       254 ~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~  326 (346)
                      .|++++|+|+| .+|++|+.||.|++||++.                    +....+       ..|...|.++.|++++
T Consensus       194 ~v~~v~wspdg-~~lasgs~dg~v~iwd~~~--------------------~~~~~~~~~~~~~~~~~~~v~~v~w~~~~  252 (434)
T 2oit_A          194 AVTSVCWSPKG-KQLAVGKQNGTVVQYLPTL--------------------QEKKVIPCPPFYESDHPVRVLDVLWIGTY  252 (434)
T ss_dssp             CEEEEEECTTS-SCEEEEETTSCEEEECTTC--------------------CEEEEECCCTTCCTTSCEEEEEEEEEETT
T ss_pred             ceeEEEEcCCC-CEEEEEcCCCcEEEEccCC--------------------cccccccCCcccCCCCceeEEEEEEecCc
Confidence            99999999999 9999999999999999983                    111111       1244579999999988


Q ss_pred             CcEEEEeecCCe------EEEeeecC
Q 019059          327 PWIFASLSYDGR------VRNHMLEK  346 (346)
Q Consensus       327 ~~~l~s~~~d~~------v~vw~~~~  346 (346)
                      ..+++....||.      +++|++.+
T Consensus       253 ~~l~~~~~~dg~~~~~~~v~i~~l~~  278 (434)
T 2oit_A          253 VFAIVYAAADGTLETSPDVVMALLPK  278 (434)
T ss_dssp             EEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred             eEEEEEccCCCccCCCCceEEEEecc
Confidence            633344445533      88998853

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.90  E-value=3e-22  Score=174.63  Aligned_cols=208  Identities=14%  Similarity=0.079  Sum_probs=145.2

Q ss_pred             cceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCC-------ccceeeeeeeccCCceEEEEeecCCCCcEE-
Q 019059           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNS-------PQLERIAALDAHVGKINCVLWWSSGRHDKL-  137 (346)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-  137 (346)
                      ..++.+++++++..++++    +.++ +++|+..........       ........+ .+...|.+++|+|+++++++ 
T Consensus        37 ~~~n~lavs~~~~~l~~~----~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~lav~  110 (434)
T 2oit_A           37 ERSSLLAVSNKYGLVFAG----GASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKFPIHHLALSCDNLTLSAC  110 (434)
T ss_dssp             SCCBCEEEETTTTEEEEE----ETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSSCEEEEEECTTSCEEEEE
T ss_pred             CCccEEEEecCCCEEEEE----CCCE-EEEEEchHhhhhcccccCcccccccCccccc-cCCCcccEEEEcCCCCEEEEE
Confidence            468899999988888775    4565 889886522110000       000111122 35678999999999995333 


Q ss_pred             --EEecCCeEEEEEcCCC-----CCCce-eeecccCCCceeeEEEEeCCC-CCcEEEEecCCeEEEEEccCCCccceeec
Q 019059          138 --VSIDEENIFLWSLDCS-----NKNAQ-VQSKQSSGMLHYLSGGAWDPH-DVNAVAATCESSVQFWDLRSMGKTNSIEH  208 (346)
Q Consensus       138 --~~~~d~~i~vwd~~~~-----~~~~~-~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  208 (346)
                        +++.|+.|++||+.+.     +.... .......+|...|.+++|+|+ +..+++++.|++|++||++++....... 
T Consensus       111 ~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~-  189 (434)
T 2oit_A          111 MMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATL-  189 (434)
T ss_dssp             EEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEE-
T ss_pred             EeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeecc-
Confidence              4567999999998754     11000 112233457789999999998 6778889999999999999886554433 


Q ss_pred             cc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecC-------CCcceEEEEeCCCCCcEEEE-ecCCC--
Q 019059          209 AH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG-------HTHWTWAVCCNPEYDGFILS-AGTDS--  275 (346)
Q Consensus       209 ~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------~~~~v~~v~~~~~~~~~l~s-~~~d~--  275 (346)
                      +|   +.+++|+|++. .|++|+.||.|++||++. . ....+..       |...|.++.|++++ .++++ .+.||  
T Consensus       190 ~~~~~v~~v~wspdg~-~lasgs~dg~v~iwd~~~-~-~~~~~~~~~~~~~~~~~~v~~v~w~~~~-~~l~~~~~~dg~~  265 (434)
T 2oit_A          190 PSTVAVTSVCWSPKGK-QLAVGKQNGTVVQYLPTL-Q-EKKVIPCPPFYESDHPVRVLDVLWIGTY-VFAIVYAAADGTL  265 (434)
T ss_dssp             CGGGCEEEEEECTTSS-CEEEEETTSCEEEECTTC-C-EEEEECCCTTCCTTSCEEEEEEEEEETT-EEEEEEEETTCCS
T ss_pred             CCCCceeEEEEcCCCC-EEEEEcCCCcEEEEccCC-c-ccccccCCcccCCCCceeEEEEEEecCc-eEEEEEccCCCcc
Confidence            33   99999999998 899999999999999982 2 3343433       33489999999988 66643 33443  


Q ss_pred             ----eEEEEecCC
Q 019059          276 ----TVNLWLVST  284 (346)
Q Consensus       276 ----~i~iwd~~~  284 (346)
                          .+++|+++.
T Consensus       266 ~~~~~v~i~~l~~  278 (434)
T 2oit_A          266 ETSPDVVMALLPK  278 (434)
T ss_dssp             SSCCEEEEEECCC
T ss_pred             CCCCceEEEEecc
Confidence                389999986

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.90  E-value=8.6e-22  Score=178.81  Aligned_cols=273  Identities=12%  Similarity=0.010  Sum_probs=188.6

Q ss_pred             eEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccc-cceEEeeecCCCCceEEEEeecCCcceEEE
Q 019059           17 RCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHP-NEIWDLSSCPFDQRIFSTVFSTGESYGAAI   95 (346)
Q Consensus        17 ~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~~~~~~~~~d~~i~v   95 (346)
                      .++..+.+++++.+++.+..   .++.+.+|.+..  +.  ...+..|. ..+..++|+|+ + ++.+....+.+...++
T Consensus        22 ~~~~~~~~~~DG~~la~~s~---~~g~~~lw~~~~--g~--~~~lt~~~~~~~~~~~~spd-~-~l~~~~~~~g~~~~~l   92 (582)
T 3o4h_A           22 VEKYSLQGVVDGDKLLVVGF---SEGSVNAYLYDG--GE--TVKLNREPINSVLDPHYGVG-R-VILVRDVSKGAEQHAL   92 (582)
T ss_dssp             SCEEEEEEEETTTEEEEEEE---ETTEEEEEEEET--TE--EEECCSSCCSEECEECTTCS-E-EEEEEECSTTSCCEEE
T ss_pred             cchheeecCCCCCeEEEEEc---cCCceeEEEEcC--CC--cEeeecccccccccccCCCC-e-EEEEeccCCCCcceEE
Confidence            35667778889999988753   367889999743  22  24445565 68999999998 4 4444321123445666


Q ss_pred             EecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEE
Q 019059           96 WQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGA  175 (346)
Q Consensus        96 w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~  175 (346)
                      |.++...      .+... .+... ..+...+|+|+++.++++++.++.+.+||+.+++. ..+...       ...+++
T Consensus        93 ~~~~~~~------~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~-~~l~~~-------~~~~~~  156 (582)
T 3o4h_A           93 FKVNTSR------PGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGL-RELARL-------PGFGFV  156 (582)
T ss_dssp             EEEETTS------TTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEE-EEEEEE-------SSCEEE
T ss_pred             EEEeccC------CCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcE-EEeecC-------CCceEE
Confidence            6654100      11111 23222 23446789999988777776666677999987642 222211       117889


Q ss_pred             eCCCCCcEEEEecC----CeEEEEEccCCCccceeecc-c-eeEEEeCCCCCcEEEEecCCC--eEEEEEcccCCcceee
Q 019059          176 WDPHDVNAVAATCE----SSVQFWDLRSMGKTNSIEHA-H-VRNVDYDTKKKHLLVTAADES--GIHLWDLRMLKAPIQE  247 (346)
Q Consensus       176 ~~~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~~-~-v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~  247 (346)
                      |+|||+.+++++.+    ..|++||+.+++.. .+... . +..++|+|||+ .|+++..++  .|++||+.. +... .
T Consensus       157 ~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~i~~~d~~~-~~~~-~  232 (582)
T 3o4h_A          157 SDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMK-VTAGLETAREARLVTVDPRD-GSVE-D  232 (582)
T ss_dssp             EEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSC-EEEEEECSSCEEEEEECTTT-CCEE-E
T ss_pred             ECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCC-EEEEccCCCeeEEEEEcCCC-CcEE-E
Confidence            99999999988766    78999999988765 33322 2 99999999999 777888888  899999986 4344 6


Q ss_pred             ecCCCcceEEEE--------eCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeE
Q 019059          248 LPGHTHWTWAVC--------CNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYG  319 (346)
Q Consensus       248 ~~~~~~~v~~v~--------~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  319 (346)
                      +..|...+..+.        |+|+| .++++++.|+.+++|++ .                    +....   ..+.|.+
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~-g--------------------~~~~~---~~~~v~~  287 (582)
T 3o4h_A          233 LELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFID-G--------------------ERVEA---PQGNHGR  287 (582)
T ss_dssp             CCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET-T--------------------EEECC---CSSEEEE
T ss_pred             ccCCCcChhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE-C--------------------Ceecc---CCCceEE
Confidence            677777777777        99999 99999999999999999 4                    12221   2356889


Q ss_pred             EEeCCCCCcEEEEeecCCe---EEEeeec
Q 019059          320 LAWSSREPWIFASLSYDGR---VRNHMLE  345 (346)
Q Consensus       320 ~~~~~~~~~~l~s~~~d~~---v~vw~~~  345 (346)
                      ++|+ +++ ++++++.+..   +.+|+++
T Consensus       288 ~~~s-dg~-~l~~~s~~~~p~~l~~~d~~  314 (582)
T 3o4h_A          288 VVLW-RGK-LVTSHTSLSTPPRIVSLPSG  314 (582)
T ss_dssp             EEEE-TTE-EEEEEEETTEEEEEEEETTC
T ss_pred             EEec-CCE-EEEEEcCCCCCCeEEEEcCC
Confidence            9999 886 7778777754   5666543

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.90  E-value=8.6e-22  Score=167.08  Aligned_cols=234  Identities=9%  Similarity=0.008  Sum_probs=164.9

Q ss_pred             EeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccC-CceEEEEeecCCCCcEEEEecCCeEEEE
Q 019059           70 DLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV-GKINCVLWWSSGRHDKLVSIDEENIFLW  148 (346)
Q Consensus        70 ~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~d~~i~vw  148 (346)
                      .+++++++..+++.    +.++.|.+||+.         ..+.+..+..+. ..+..++|+|+++.++++...++.|.+|
T Consensus         4 g~~~~~~~~~~v~~----~~~~~v~~~d~~---------~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~   70 (349)
T 1jmx_B            4 GPALKAGHEYMIVT----NYPNNLHVVDVA---------SDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGI   70 (349)
T ss_dssp             CCCCCTTCEEEEEE----ETTTEEEEEETT---------TTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             cccccCCCEEEEEe----CCCCeEEEEECC---------CCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEE
Confidence            46778876666664    578999999998         566666665443 2578999999998655555668999999


Q ss_pred             EcCCCCCCceeeecccC-CCceeeEEEEeCCCCCcEEEEecC------------CeEEEEEccCCCcc---ceeeccc-e
Q 019059          149 SLDCSNKNAQVQSKQSS-GMLHYLSGGAWDPHDVNAVAATCE------------SSVQFWDLRSMGKT---NSIEHAH-V  211 (346)
Q Consensus       149 d~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d------------~~i~i~d~~~~~~~---~~~~~~~-v  211 (346)
                      |+.+++....+...... .....+..++|+|+++.+++++.+            +.|.+||+.+++..   ..+.... +
T Consensus        71 d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~  150 (349)
T 1jmx_B           71 DLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQV  150 (349)
T ss_dssp             ETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSC
T ss_pred             eCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcc
Confidence            99876543333211100 002247889999999999988865            89999999985433   3333223 8


Q ss_pred             eEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCC---------------------------------------
Q 019059          212 RNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHT---------------------------------------  252 (346)
Q Consensus       212 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------------------------------------  252 (346)
                      .+++|+|+++ +++ ++.  .|.+||+.+ .+.+..+..+.                                       
T Consensus       151 ~~~~~s~dg~-l~~-~~~--~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  225 (349)
T 1jmx_B          151 YLMRAADDGS-LYV-AGP--DIYKMDVKT-GKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQD  225 (349)
T ss_dssp             CCEEECTTSC-EEE-ESS--SEEEECTTT-CCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC------
T ss_pred             cceeECCCCc-EEE-ccC--cEEEEeCCC-CceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCC
Confidence            8999999998 665 333  499999876 33343333221                                       


Q ss_pred             -----------------------------cceEEEEeCC-CCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccc
Q 019059          253 -----------------------------HWTWAVCCNP-EYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQR  302 (346)
Q Consensus       253 -----------------------------~~v~~v~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  302 (346)
                                                   ..+..++|+| ++ .+++++  ++.|.+||+.+                  
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg-~~l~~~--~~~v~~~d~~~------------------  284 (349)
T 1jmx_B          226 PATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP-NQIYGV--LNRLAKYDLKQ------------------  284 (349)
T ss_dssp             -CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCT-TEEEEE--ESEEEEEETTT------------------
T ss_pred             ccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCC-CEEEEE--cCeEEEEECcc------------------
Confidence                                         1345677889 99 788877  88999999998                  


Q ss_pred             ccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          303 ANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       303 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                       ++.+..+... ..+.+++|+|+++ .|++++.++.|++||++
T Consensus       285 -~~~~~~~~~~-~~~~~~~~s~dg~-~l~~~~~~~~v~v~d~~  324 (349)
T 1jmx_B          285 -RKLIKAANLD-HTYYCVAFDKKGD-KLYLGGTFNDLAVFNPD  324 (349)
T ss_dssp             -TEEEEEEECS-SCCCEEEECSSSS-CEEEESBSSEEEEEETT
T ss_pred             -CeEEEEEcCC-CCccceEECCCCC-EEEEecCCCeEEEEecc
Confidence             6665555432 3478999999997 55557888999999985

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.89  E-value=9e-21  Score=183.03  Aligned_cols=293  Identities=8%  Similarity=-0.058  Sum_probs=198.1

Q ss_pred             eEeeeccCCCCcceEEEeeccc--CCCCeEEEEEecCCCCeEEEeeeeccccce-------EEeeecCCCCceEEEEeec
Q 019059           17 RCISDVKADTDHTSFLTGTLSL--KEENEVHLLRLSSGGTELICEGLFSHPNEI-------WDLSSCPFDQRIFSTVFST   87 (346)
Q Consensus        17 ~~~~~~~~~~~~~~~~~g~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v-------~~~~~~~~~~~l~~~~~~~   87 (346)
                      ..+..+.++|++.+++.+....  .....|++|++...  .  ...+..|...+       ..++|+|+++ ++++.   
T Consensus        53 ~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g--~--~~~lt~~~~~~~~~~~~~~~~~~SpDg~-ll~~~---  124 (1045)
T 1k32_A           53 GVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENG--E--IKRITYFSGKSTGRRMFTDVAGFDPDGN-LIIST---  124 (1045)
T ss_dssp             SEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTT--E--EEECCCCCEEEETTEECSEEEEECTTCC-EEEEE---
T ss_pred             CcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCC--C--eEEcccCCCcccccccccccccCCCCCE-EEEEE---
Confidence            3456677899999998875431  12346777776543  2  45677888888       9999999998 55542   


Q ss_pred             CCc------ceEEEEecCcccCC----CC------------------------------------CccceeeeeeeccCC
Q 019059           88 GES------YGAAIWQIPELYGQ----LN------------------------------------SPQLERIAALDAHVG  121 (346)
Q Consensus        88 ~~d------~~i~vw~~~~~~~~----~~------------------------------------~~~~~~~~~~~~~~~  121 (346)
                      +.+      ..|.+|++......    ..                                    .+.......+..|..
T Consensus       125 ~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~  204 (1045)
T 1k32_A          125 DAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMST  204 (1045)
T ss_dssp             CTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSS
T ss_pred             CCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCC
Confidence            322      35667776421100    00                                    000011233456788


Q ss_pred             ceEEEEeecCCCCcEEEEecCCeEEEEEcCCCC-CCceeeec----------------------------------ccCC
Q 019059          122 KINCVLWWSSGRHDKLVSIDEENIFLWSLDCSN-KNAQVQSK----------------------------------QSSG  166 (346)
Q Consensus       122 ~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~-~~~~~~~~----------------------------------~~~~  166 (346)
                      .+.++.|+++  .+++++..++.+.+|.+.... ....+...                                  ....
T Consensus       205 ~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~~l~~  282 (1045)
T 1k32_A          205 HVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNPDTEKIEKIEI  282 (1045)
T ss_dssp             CCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTEEEEECTTTCCEEECCC
T ss_pred             cccceEEeCC--EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEeCCEEEEecCCceEeeeecc
Confidence            8888999877  345566667888888765311 11110000                                  0000


Q ss_pred             -----------CceeeEEEEeC-CCCCcEEEEecCCeEEEEEccCCCccceee-cc-ceeEEEeCCCCCcEEEEecCCCe
Q 019059          167 -----------MLHYLSGGAWD-PHDVNAVAATCESSVQFWDLRSMGKTNSIE-HA-HVRNVDYDTKKKHLLVTAADESG  232 (346)
Q Consensus       167 -----------~~~~v~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~-~v~~~~~~~~~~~~l~~~~~dg~  232 (346)
                                 +...+..++|+ |+++.+++++ ++.|.+|++..++...... .. .+..++|+ +++ .++.++.+..
T Consensus       283 ~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~-~l~~~s~~~~  359 (1045)
T 1k32_A          283 GDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKV-AFIHGTREGD  359 (1045)
T ss_dssp             CCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEE-EEEEEETTEE
T ss_pred             CcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCC-eEEEEECCCc
Confidence                       11247788999 9999888877 7889999988765433211 12 28899999 887 6777777778


Q ss_pred             EE-EEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccc
Q 019059          233 IH-LWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYS  311 (346)
Q Consensus       233 i~-i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (346)
                      +. +||+.. . ....+..|...+..++|+|+| ++|++++.++.|++||+.+                   ++......
T Consensus       360 l~~~~d~~~-~-~~~~l~~~~~~~~~~~~SpDG-~~la~~~~~~~v~~~d~~t-------------------g~~~~~~~  417 (1045)
T 1k32_A          360 FLGIYDYRT-G-KAEKFEENLGNVFAMGVDRNG-KFAVVANDRFEIMTVDLET-------------------GKPTVIER  417 (1045)
T ss_dssp             EEEEEETTT-C-CEEECCCCCCSEEEEEECTTS-SEEEEEETTSEEEEEETTT-------------------CCEEEEEE
T ss_pred             eEEEEECCC-C-CceEecCCccceeeeEECCCC-CEEEEECCCCeEEEEECCC-------------------CceEEecc
Confidence            88 889875 3 344455788899999999999 9999999999999999998                   66666666


Q ss_pred             cccceeeEEEeCCCCCcEEEEeecC----------CeEEEeeec
Q 019059          312 DYEDSVYGLAWSSREPWIFASLSYD----------GRVRNHMLE  345 (346)
Q Consensus       312 ~~~~~v~~~~~~~~~~~~l~s~~~d----------~~v~vw~~~  345 (346)
                      +|...+.+++|+|+|+ .|++++.+          +.|++||++
T Consensus       418 ~~~~~v~~~~~SpDG~-~la~~~~~~~~~~~~~~~~~i~l~d~~  460 (1045)
T 1k32_A          418 SREAMITDFTISDNSR-FIAYGFPLKHGETDGYVMQAIHVYDME  460 (1045)
T ss_dssp             CSSSCCCCEEECTTSC-EEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred             CCCCCccceEECCCCC-eEEEEecCccccccCCCCCeEEEEECC
Confidence            7888899999999998 66666654          489999975

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.89  E-value=1.7e-21  Score=188.11  Aligned_cols=254  Identities=13%  Similarity=0.068  Sum_probs=187.2

Q ss_pred             CCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeec-
Q 019059           40 EENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA-  118 (346)
Q Consensus        40 ~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~-  118 (346)
                      .++...+|.+...+...  ..+..|. .+..++|+|+++.++.+     .++.|.+|++.         ... +..+.. 
T Consensus       222 ~dg~~~l~~~~~~g~~~--~~l~~~~-~~~~~~~SpDG~~la~~-----~~~~i~~~d~~---------~~~-l~~l~~~  283 (1045)
T 1k32_A          222 IDGFGQIYSTDLDGKDL--RKHTSFT-DYYPRHLNTDGRRILFS-----KGGSIYIFNPD---------TEK-IEKIEIG  283 (1045)
T ss_dssp             TTSSCEEEEEETTSCSC--EECCCCC-SSCEEEEEESSSCEEEE-----ETTEEEEECTT---------TCC-EEECCCC
T ss_pred             ccCceEEEEEeCCCCcc--eEecCCC-CcceeeEcCCCCEEEEE-----eCCEEEEecCC---------ceE-eeeeccC
Confidence            34566677766543322  2333444 46778999999988885     57899999984         111 123322 


Q ss_pred             ----------cCCceEEEEee-cCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCce-eeEEEEeCCCCCcEEEE
Q 019059          119 ----------HVGKINCVLWW-SSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLH-YLSGGAWDPHDVNAVAA  186 (346)
Q Consensus       119 ----------~~~~i~~~~~~-~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~  186 (346)
                                |...+.+++|+ |+|+. ++.++ ++.|.+|++.++.. ..     ...+.. .+..++|+ +++.++.+
T Consensus       284 ~~~~~~~~~~~~~~v~~~~~S~pdG~~-la~~~-~~~i~~~~~~~~~~-~~-----~~~~~~~~~~~~~~s-dg~~l~~~  354 (1045)
T 1k32_A          284 DLESPEDRIISIPSKFAEDFSPLDGDL-IAFVS-RGQAFIQDVSGTYV-LK-----VPEPLRIRYVRRGGD-TKVAFIHG  354 (1045)
T ss_dssp             CCCBCCSEEEECGGGGEEEEEECGGGC-EEEEE-TTEEEEECTTSSBE-EE-----CSCCSCEEEEEECSS-SEEEEEEE
T ss_pred             cccccccccccccccceeeecCCCCCE-EEEEE-cCEEEEEcCCCCce-EE-----ccCCCcceEEeeeEc-CCCeEEEE
Confidence                      45578999999 99996 33333 88999999875431 11     123444 78899999 99999999


Q ss_pred             ecCCeEE-EEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCC
Q 019059          187 TCESSVQ-FWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEY  264 (346)
Q Consensus       187 ~~d~~i~-i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~  264 (346)
                      +.+..+. +||+.+++......... +..++|+|+++ .|++++.++.|++||+.+ +.....+..|...+.+++|+|+|
T Consensus       355 s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~-~la~~~~~~~v~~~d~~t-g~~~~~~~~~~~~v~~~~~SpDG  432 (1045)
T 1k32_A          355 TREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGK-FAVVANDRFEIMTVDLET-GKPTVIERSREAMITDFTISDNS  432 (1045)
T ss_dssp             ETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSS-EEEEEETTSEEEEEETTT-CCEEEEEECSSSCCCCEEECTTS
T ss_pred             ECCCceEEEEECCCCCceEecCCccceeeeEECCCCC-EEEEECCCCeEEEEECCC-CceEEeccCCCCCccceEECCCC
Confidence            8888888 99998765433221112 99999999998 888889999999999986 44555565788999999999999


Q ss_pred             CcEEEEecCCC----------eEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEee
Q 019059          265 DGFILSAGTDS----------TVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLS  334 (346)
Q Consensus       265 ~~~l~s~~~d~----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  334 (346)
                       ++|++++.++          .|++||+.+                   ++ ...+..|...+..++|+|+|+ .|+..+
T Consensus       433 -~~la~~~~~~~~~~~~~~~~~i~l~d~~~-------------------g~-~~~l~~~~~~~~~~~~spdG~-~l~~~s  490 (1045)
T 1k32_A          433 -RFIAYGFPLKHGETDGYVMQAIHVYDMEG-------------------RK-IFAATTENSHDYAPAFDADSK-NLYYLS  490 (1045)
T ss_dssp             -CEEEEEEEECSSTTCSCCEEEEEEEETTT-------------------TE-EEECSCSSSBEEEEEECTTSC-EEEEEE
T ss_pred             -CeEEEEecCccccccCCCCCeEEEEECCC-------------------Cc-EEEeeCCCcccCCceEcCCCC-EEEEEe
Confidence             8888776644          899999987                   55 566777877889999999998 777888


Q ss_pred             cCCeEEEeee
Q 019059          335 YDGRVRNHML  344 (346)
Q Consensus       335 ~d~~v~vw~~  344 (346)
                      .++..++|+.
T Consensus       491 ~~~~~~~~~~  500 (1045)
T 1k32_A          491 YRSLDPSPDR  500 (1045)
T ss_dssp             SCCCCCEECS
T ss_pred             cccCCcCcch
Confidence            7777777753

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.89  E-value=1.1e-19  Score=155.00  Aligned_cols=251  Identities=8%  Similarity=0.037  Sum_probs=163.0

Q ss_pred             eeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEE-EeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEec
Q 019059           20 SDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELI-CEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQI   98 (346)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~   98 (346)
                      ..+.+++++..++++......++.+.+|++......+. ......+......+++  +++.++++   +..++.|.+|++
T Consensus        53 ~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~---~~~~~~v~~~~~  127 (361)
T 3scy_A           53 SYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTA---NYSGGSITVFPI  127 (361)
T ss_dssp             CSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEE---ETTTTEEEEEEB
T ss_pred             ceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEE---ECCCCEEEEEEe
Confidence            33567788887877654322458999999988644333 2333445567777888  77777776   356789999998


Q ss_pred             CcccCCCCCccceeeeee-----------eccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCC------Ccee--
Q 019059           99 PELYGQLNSPQLERIAAL-----------DAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNK------NAQV--  159 (346)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~-----------~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~------~~~~--  159 (346)
                      ....      ....+...           ..+...+.+++|+|+|++++++...++.|.+|++.....      ....  
T Consensus       128 ~~~g------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~  201 (361)
T 3scy_A          128 GQDG------ALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGT  201 (361)
T ss_dssp             CTTS------CBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEE
T ss_pred             CCCC------cCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccc
Confidence            7311      01111111           112234688999999997555555589999999886542      1110  


Q ss_pred             eecccCCCceeeEEEEeCCCCCcEEEEe-cCCeEEEEEccCCCcc--ceee--ccc---eeEEEeCCCCCcEEEEecC-C
Q 019059          160 QSKQSSGMLHYLSGGAWDPHDVNAVAAT-CESSVQFWDLRSMGKT--NSIE--HAH---VRNVDYDTKKKHLLVTAAD-E  230 (346)
Q Consensus       160 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~--~~~~--~~~---v~~~~~~~~~~~~l~~~~~-d  230 (346)
                      ..............++|+|+++++++++ .++.|.+||+.+++..  ..+.  ..+   +..++|+|++++++++... +
T Consensus       202 ~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~  281 (361)
T 3scy_A          202 PEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKA  281 (361)
T ss_dssp             EEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSS
T ss_pred             ccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCC
Confidence            0000111223567899999999888887 5899999999876432  2221  111   6799999999944454545 5


Q ss_pred             CeEEEEEcccC-Cc--ceeeecCCCcceEEEEeCCCCCcEEEEec-CCCeEEEEecC
Q 019059          231 SGIHLWDLRML-KA--PIQELPGHTHWTWAVCCNPEYDGFILSAG-TDSTVNLWLVS  283 (346)
Q Consensus       231 g~i~i~d~~~~-~~--~~~~~~~~~~~v~~v~~~~~~~~~l~s~~-~d~~i~iwd~~  283 (346)
                      +.|.+|++... +.  .+..+.. ...+..++|+|+| ++|++++ .++.|.+|++.
T Consensus       282 ~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg-~~l~~~~~~~~~v~v~~~d  336 (361)
T 3scy_A          282 DGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNG-KYLLVACRDTNVIQIFERD  336 (361)
T ss_dssp             CEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTS-CEEEEEETTTTEEEEEEEC
T ss_pred             CEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCC-CEEEEEECCCCCEEEEEEE
Confidence            89999999621 22  2333443 4577899999999 7777666 67899997665

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.88  E-value=3.4e-20  Score=157.32  Aligned_cols=248  Identities=8%  Similarity=0.081  Sum_probs=165.3

Q ss_pred             ccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcc
Q 019059           22 VKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPEL  101 (346)
Q Consensus        22 ~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~  101 (346)
                      +.+++++. +++.... ..++.+.+|++... .......+..+...+..++|+|+++.|+++.   ..++.|.+|++.. 
T Consensus        45 ~a~spdg~-l~~~~~~-~~~~~v~~~~~~~g-~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~---~~~~~v~v~~~~~-  117 (347)
T 3hfq_A           45 LALSAKDC-LYSVDKE-DDEGGIAAWQIDGQ-TAHKLNTVVAPGTPPAYVAVDEARQLVYSAN---YHKGTAEVMKIAA-  117 (347)
T ss_dssp             EEECTTCE-EEEEEEE-TTEEEEEEEEEETT-EEEEEEEEEEESCCCSEEEEETTTTEEEEEE---TTTTEEEEEEECT-
T ss_pred             EEEccCCe-EEEEEec-CCCceEEEEEecCC-cEEEeeeeecCCCCCEEEEECCCCCEEEEEe---CCCCEEEEEEeCC-
Confidence            55677776 5544321 23578999999543 2223344456778889999999999888863   4678999999862 


Q ss_pred             cCCCCCccceeeeeeec---------cCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeE
Q 019059          102 YGQLNSPQLERIAALDA---------HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLS  172 (346)
Q Consensus       102 ~~~~~~~~~~~~~~~~~---------~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~  172 (346)
                           ......+..+..         +...+.+++|+|+|+ ++++...++.|.+|++............. ........
T Consensus       118 -----~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~-~~~g~~p~  190 (347)
T 3hfq_A          118 -----DGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLT-MEAGFGPR  190 (347)
T ss_dssp             -----TSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEE-CCTTCCEE
T ss_pred             -----CCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEE-cCCCCCCc
Confidence                 112233333321         123488999999999 56666668899999998332222211111 11112567


Q ss_pred             EEEeCCCCCcEEEEe-cCCeEEEEEccC--CCc--cceee---cc----c-eeEEEeCCCCCcEEEEecCCCeEEEEEcc
Q 019059          173 GGAWDPHDVNAVAAT-CESSVQFWDLRS--MGK--TNSIE---HA----H-VRNVDYDTKKKHLLVTAADESGIHLWDLR  239 (346)
Q Consensus       173 ~~~~~~~~~~l~~~~-~d~~i~i~d~~~--~~~--~~~~~---~~----~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  239 (346)
                      .++|+|+++++++++ .++.|.+|++..  ++.  ...+.   ..    . +..++|+|++++++++...++.|.+||+.
T Consensus       191 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~  270 (347)
T 3hfq_A          191 HLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT  270 (347)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred             eEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence            899999999777755 578999999885  332  11111   11    2 78899999999555677778999999987


Q ss_pred             cCC--cceeeecCCCcceEEEEeCCCCCcEEEEecC-CCeEEEEecCC
Q 019059          240 MLK--APIQELPGHTHWTWAVCCNPEYDGFILSAGT-DSTVNLWLVST  284 (346)
Q Consensus       240 ~~~--~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~-d~~i~iwd~~~  284 (346)
                      ..+  ..+..+..+...+..++|+|+| ++|++++. ++.|.+|++..
T Consensus       271 ~~g~~~~~~~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~d~  317 (347)
T 3hfq_A          271 ADGHLTLIQQISTEGDFPRDFDLDPTE-AFVVVVNQNTDNATLYARDL  317 (347)
T ss_dssp             GGGCEEEEEEEECSSSCCCEEEECTTS-SEEEEEETTTTEEEEEEECT
T ss_pred             CCCcEEEeEEEecCCCCcCeEEECCCC-CEEEEEEcCCCcEEEEEEeC
Confidence            322  2445555566678999999999 77777665 58999996643

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.87  E-value=1.7e-21  Score=181.23  Aligned_cols=234  Identities=8%  Similarity=-0.031  Sum_probs=160.7

Q ss_pred             EEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCC---ceEEEEeecCCCCcEEEEe-----
Q 019059           69 WDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVG---KINCVLWWSSGRHDKLVSI-----  140 (346)
Q Consensus        69 ~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~~~~~-----  140 (346)
                      .+++|+|+++ +++.    +.|+.|++||+.         .++....+..|..   .+.+++|||||+.+++++.     
T Consensus        19 ~~~~~s~dg~-~~~~----~~d~~i~~~~~~---------~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~   84 (719)
T 1z68_A           19 FFPNWISGQE-YLHQ----SADNNIVLYNIE---------TGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLW   84 (719)
T ss_dssp             CCCEESSSSE-EEEE----CTTSCEEEEESS---------SCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECS
T ss_pred             CccEECCCCe-EEEE----cCCCCEEEEEcC---------CCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeE
Confidence            3789999995 4443    468899999998         5555555544433   3899999999996444432     


Q ss_pred             ---cCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---e---
Q 019059          141 ---DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---V---  211 (346)
Q Consensus       141 ---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v---  211 (346)
                         .++.|++||+.+++.......      ...+..++|+|||+.|+.+. ++.|++||+.+++.......++   +   
T Consensus        85 ~~s~~~~i~~~d~~~g~~~~~~~l------~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g  157 (719)
T 1z68_A           85 RYSYTATYYIYDLSNGEFVRGNEL------PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNG  157 (719)
T ss_dssp             SSCEEEEEEEEETTTTEECCSSCC------CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEES
T ss_pred             EeecceEEEEEECCCCccccceec------CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcc
Confidence               168999999987653100000      12578899999999999885 7899999998877644322222   2   


Q ss_pred             --------------eEEEeCCCCCcEEEEecCCC----------------------------------eEEEEEcccCCc
Q 019059          212 --------------RNVDYDTKKKHLLVTAADES----------------------------------GIHLWDLRMLKA  243 (346)
Q Consensus       212 --------------~~~~~~~~~~~~l~~~~~dg----------------------------------~i~i~d~~~~~~  243 (346)
                                    .+++|+|||+ .|++++.|.                                  .|++||+.. +.
T Consensus       158 ~~~~v~~ee~~~~~~~~~wSPDG~-~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~-~~  235 (719)
T 1z68_A          158 IPDWVYEEEMLATKYALWWSPNGK-FLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTY-PA  235 (719)
T ss_dssp             SCCHHHHHHTTCSSCCEEECTTSS-EEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSC-HH
T ss_pred             cccceeeeecccCcccEEECCCCC-EEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCC-CC
Confidence                          5899999999 677665432                                  788999875 32


Q ss_pred             ce--------eeecCCCcceEEEEeCCCCCcEEEEecCC----CeEEEEe----cCCCCCCCCCcccccCCccccccccc
Q 019059          244 PI--------QELPGHTHWTWAVCCNPEYDGFILSAGTD----STVNLWL----VSTSNHDELPSESLVESPNQRANSLL  307 (346)
Q Consensus       244 ~~--------~~~~~~~~~v~~v~~~~~~~~~l~s~~~d----~~i~iwd----~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (346)
                      ..        ..+..|...+..++|+|++ +++++....    ..|.+||    ..+                   +++.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~SpD~-~~~~~~~~~~~~~~~l~~~d~~~~~~~-------------------g~~~  295 (719)
T 1z68_A          236 YVGPQEVPVPAMIASSDYYFSWLTWVTDE-RVCLQWLKRVQNVSVLSICDFREDWQT-------------------WDCP  295 (719)
T ss_dssp             HHCCEECCCCHHHHTSCEEEEEEEESSSS-EEEEEEEESSTTEEEEEEEEECSSSSS-------------------EECC
T ss_pred             ccceeEccCCccCCCCcceEEEeEEeCCC-eEEEEEeccccCeEEEEEEcccCCCCC-------------------CceE
Confidence            21        2234688889999999998 877774432    2488889    766                   5555


Q ss_pred             ccc----ccccceee-----EEEeCCCCCcEEE-EeecCC--eEEEeeec
Q 019059          308 NSY----SDYEDSVY-----GLAWSSREPWIFA-SLSYDG--RVRNHMLE  345 (346)
Q Consensus       308 ~~~----~~~~~~v~-----~~~~~~~~~~~l~-s~~~d~--~v~vw~~~  345 (346)
                      ..+    .+|...+.     .+.|+|+|+.+++ +...++  .|.+|+++
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~  345 (719)
T 1z68_A          296 KTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDT  345 (719)
T ss_dssp             GGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSC
T ss_pred             EEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECC
Confidence            555    35666666     8999999985444 344555  45555553

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.86  E-value=2.1e-20  Score=157.63  Aligned_cols=221  Identities=9%  Similarity=0.075  Sum_probs=155.8

Q ss_pred             CCcceEEEEecCcccCCCCCccceeeeeeeccCC--ceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccC
Q 019059           88 GESYGAAIWQIPELYGQLNSPQLERIAALDAHVG--KINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSS  165 (346)
Q Consensus        88 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~  165 (346)
                      +.++.|.+||+.         ..+.+..+.....  .+..++|+|+++.+++++..++.|.+||+.+++....+......
T Consensus         8 ~~~~~v~~~d~~---------~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~   78 (337)
T 1pby_B            8 ARPDKLVVIDTE---------KMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE   78 (337)
T ss_dssp             ETTTEEEEEETT---------TTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT
T ss_pred             CCCCeEEEEECC---------CCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc
Confidence            578899999998         5666666643322  57899999999865566666899999999876643333221111


Q ss_pred             CCceeeEEEEeCCCCCcEEEEe------------cCCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCe
Q 019059          166 GMLHYLSGGAWDPHDVNAVAAT------------CESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESG  232 (346)
Q Consensus       166 ~~~~~v~~~~~~~~~~~l~~~~------------~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~  232 (346)
                      .+...+..++|+|+++.++++.            .++.|.+||+.+++....+..+. +.+++|+|+++ .++++  ++.
T Consensus        79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~~~--~~~  155 (337)
T 1pby_B           79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGS-KLYGL--GRD  155 (337)
T ss_dssp             EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSS-CEEEE--SSS
T ss_pred             cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCC-EEEEe--CCe
Confidence            1122567899999999988886            57999999999888777766544 88999999998 55555  578


Q ss_pred             EEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEec-CCC-----------------------eEEEEecCCCCCC
Q 019059          233 IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG-TDS-----------------------TVNLWLVSTSNHD  288 (346)
Q Consensus       233 i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~-~d~-----------------------~i~iwd~~~~~~~  288 (346)
                      |++||+.+ ...+..+..+.. ...+.|+|++ ..++..+ .++                       .|.+||+.+    
T Consensus       156 i~~~d~~~-~~~~~~~~~~~~-~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~----  228 (337)
T 1pby_B          156 LHVMDPEA-GTLVEDKPIQSW-EAETYAQPDV-LAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLET----  228 (337)
T ss_dssp             EEEEETTT-TEEEEEECSTTT-TTTTBCCCBC-CCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTT----
T ss_pred             EEEEECCC-CcEeeeeecccc-CCCceeCCCc-cEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCC----
Confidence            99999987 445555554331 1234789999 5454433 333                       368888887    


Q ss_pred             CCCcccccCCccccccccc-cccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          289 ELPSESLVESPNQRANSLL-NSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                                     ++.. ..+..+...+.+++|+|+++ .++++  ++.|++||++
T Consensus       229 ---------------~~~~~~~~~~~~~~~~~~~~s~dg~-~l~~~--~~~v~~~d~~  268 (337)
T 1pby_B          229 ---------------GEMAMREVRIMDVFYFSTAVNPAKT-RAFGA--YNVLESFDLE  268 (337)
T ss_dssp             ---------------CCEEEEEEEECSSCEEEEEECTTSS-EEEEE--ESEEEEEETT
T ss_pred             ---------------CCceEeecCCCCCceeeEEECCCCC-EEEEe--CCeEEEEECC
Confidence                           4332 22334555688999999997 55555  7999999975

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.86  E-value=2.1e-19  Score=152.31  Aligned_cols=230  Identities=9%  Similarity=0.005  Sum_probs=155.6

Q ss_pred             CCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccc-cceEEeeecCCCCceEEEEeecCCcceEEEEecCccc
Q 019059           24 ADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHP-NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELY  102 (346)
Q Consensus        24 ~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~  102 (346)
                      ...+...++.+    ..++.|.+|+....  ... ..+..+. ..+..++|+|+++.++++   +..++.|.+||+.   
T Consensus         7 ~~~~~~~~v~~----~~~~~v~~~d~~~~--~~~-~~~~~~~~~~~~~~~~s~dg~~~~v~---~~~~~~i~~~d~~---   73 (349)
T 1jmx_B            7 LKAGHEYMIVT----NYPNNLHVVDVASD--TVY-KSCVMPDKFGPGTAMMAPDNRTAYVL---NNHYGDIYGIDLD---   73 (349)
T ss_dssp             CCTTCEEEEEE----ETTTEEEEEETTTT--EEE-EEEECSSCCSSCEEEECTTSSEEEEE---ETTTTEEEEEETT---
T ss_pred             ccCCCEEEEEe----CCCCeEEEEECCCC--cEE-EEEecCCCCCCceeEECCCCCEEEEE---eCCCCcEEEEeCC---
Confidence            33444445544    34689999987653  222 2222222 257899999999877765   3567899999987   


Q ss_pred             CCCCCccceeeeeeeccC------CceEEEEeecCCCCcEEEEec-----------CCeEEEEEcCCCCCCceeeecccC
Q 019059          103 GQLNSPQLERIAALDAHV------GKINCVLWWSSGRHDKLVSID-----------EENIFLWSLDCSNKNAQVQSKQSS  165 (346)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~~~~~~~~-----------d~~i~vwd~~~~~~~~~~~~~~~~  165 (346)
                            ..+.+..+..+.      ..+.+++|+|+|++++++...           ++.|.+||+.+++.........  
T Consensus        74 ------t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--  145 (349)
T 1jmx_B           74 ------TCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP--  145 (349)
T ss_dssp             ------TTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE--
T ss_pred             ------CCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc--
Confidence                  556555554322      237889999999964444332           4899999998643222211111  


Q ss_pred             CCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeecc------------------------------------
Q 019059          166 GMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA------------------------------------  209 (346)
Q Consensus       166 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~------------------------------------  209 (346)
                       +...+.+++|+|+++ +++++  +.|.+||+.+++....+..+                                    
T Consensus       146 -~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  221 (349)
T 1jmx_B          146 -MPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKD  221 (349)
T ss_dssp             -CCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC--
T ss_pred             -CCCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCC
Confidence             122578899999999 66654  34999999887754433211                                    


Q ss_pred             ----------------------------------ceeEEEeCC-CCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcc
Q 019059          210 ----------------------------------HVRNVDYDT-KKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHW  254 (346)
Q Consensus       210 ----------------------------------~v~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  254 (346)
                                                        .+.+++|+| +++ .++++  ++.|.+||+.+ .+.+..+. ....
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~-~l~~~--~~~v~~~d~~~-~~~~~~~~-~~~~  296 (349)
T 1jmx_B          222 DKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPN-QIYGV--LNRLAKYDLKQ-RKLIKAAN-LDHT  296 (349)
T ss_dssp             -----CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTT-EEEEE--ESEEEEEETTT-TEEEEEEE-CSSC
T ss_pred             CcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCC-EEEEE--cCeEEEEECcc-CeEEEEEc-CCCC
Confidence                                              034667789 888 66666  78999999987 44555554 3345


Q ss_pred             eEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          255 TWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       255 v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      +.+++|+|++ .+|++++.++.|++||+.+
T Consensus       297 ~~~~~~s~dg-~~l~~~~~~~~v~v~d~~~  325 (349)
T 1jmx_B          297 YYCVAFDKKG-DKLYLGGTFNDLAVFNPDT  325 (349)
T ss_dssp             CCEEEECSSS-SCEEEESBSSEEEEEETTT
T ss_pred             ccceEECCCC-CEEEEecCCCeEEEEeccc
Confidence            7899999999 7777788899999999987

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.86  E-value=3.3e-20  Score=172.61  Aligned_cols=278  Identities=11%  Similarity=0.072  Sum_probs=176.3

Q ss_pred             eccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeecccc---ceEEeeecCCCCceEEEEeec-----CCcce
Q 019059           21 DVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPN---EIWDLSSCPFDQRIFSTVFST-----GESYG   92 (346)
Q Consensus        21 ~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~l~~~~~~~-----~~d~~   92 (346)
                      ...+.+++ +++...    .++.+++|++......   ..+..|..   .+.+++|||||+.|+.+....     +.++.
T Consensus        20 ~~~~s~dg-~~~~~~----~d~~i~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~   91 (719)
T 1z68_A           20 FPNWISGQ-EYLHQS----ADNNIVLYNIETGQSY---TILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTAT   91 (719)
T ss_dssp             CCEESSSS-EEEEEC----TTSCEEEEESSSCCEE---EEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred             ccEECCCC-eEEEEc----CCCCEEEEEcCCCcEE---EEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceE
Confidence            44556677 455543    3678999988765421   22223333   389999999999998864211     22689


Q ss_pred             EEEEecCcccCCCCCccceee--eeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccC-----
Q 019059           93 AAIWQIPELYGQLNSPQLERI--AALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSS-----  165 (346)
Q Consensus        93 i~vw~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-----  165 (346)
                      |.+||+.         .++.+  ..+   ...+..++|+|||+. ++.+ .++.|++|++.+++... +......     
T Consensus        92 i~~~d~~---------~g~~~~~~~l---~~~~~~~~~SPDG~~-la~~-~~~~i~~~~~~~g~~~~-l~~~~~~~~v~~  156 (719)
T 1z68_A           92 YYIYDLS---------NGEFVRGNEL---PRPIQYLCWSPVGSK-LAYV-YQNNIYLKQRPGDPPFQ-ITFNGRENKIFN  156 (719)
T ss_dssp             EEEEETT---------TTEECCSSCC---CSSBCCEEECSSTTC-EEEE-ETTEEEEESSTTSCCEE-CCCCCBTTTEEE
T ss_pred             EEEEECC---------CCccccceec---CcccccceECCCCCE-EEEE-ECCeEEEEeCCCCCcEE-EecCCCcCCeEc
Confidence            9999997         34432  222   246889999999996 3333 48899999998765322 1111100     


Q ss_pred             CCc---------eeeEEEEeCCCCCcEEEEecCC----------------------------------eEEEEEccCCCc
Q 019059          166 GML---------HYLSGGAWDPHDVNAVAATCES----------------------------------SVQFWDLRSMGK  202 (346)
Q Consensus       166 ~~~---------~~v~~~~~~~~~~~l~~~~~d~----------------------------------~i~i~d~~~~~~  202 (346)
                      ++.         ....+++|+|||+.|++++.|.                                  .|++||+.+++.
T Consensus       157 g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~  236 (719)
T 1z68_A          157 GIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAY  236 (719)
T ss_dssp             SSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHH
T ss_pred             ccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCc
Confidence            111         1125899999999999887542                                  788999998764


Q ss_pred             c--ceee-----ccc---eeEEEeCCCCCcEEEEecC--C--CeEEEEE----cccCCcceeee----cCCCcceE----
Q 019059          203 T--NSIE-----HAH---VRNVDYDTKKKHLLVTAAD--E--SGIHLWD----LRMLKAPIQEL----PGHTHWTW----  256 (346)
Q Consensus       203 ~--~~~~-----~~~---v~~~~~~~~~~~~l~~~~~--d--g~i~i~d----~~~~~~~~~~~----~~~~~~v~----  256 (346)
                      .  ..+.     .++   +..++|+|++. ++++...  +  ..|.+||    +.+ +.....+    ..|...+.    
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~SpD~~-~~~~~~~~~~~~~~l~~~d~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~  314 (719)
T 1z68_A          237 VGPQEVPVPAMIASSDYYFSWLTWVTDER-VCLQWLKRVQNVSVLSICDFREDWQT-WDCPKTQEHIEESRTGWAGGFFV  314 (719)
T ss_dssp             HCCEECCCCHHHHTSCEEEEEEEESSSSE-EEEEEEESSTTEEEEEEEEECSSSSS-EECCGGGEEEEECSSSCSSSSSC
T ss_pred             cceeEccCCccCCCCcceEEEeEEeCCCe-EEEEEeccccCeEEEEEEcccCCCCC-CceEEEEecccccCCceEccccC
Confidence            3  1111     122   89999999976 6666332  2  2488889    654 3333334    36677776    


Q ss_pred             -EEEeCCCCCcEEE--EecCCC--eEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEE
Q 019059          257 -AVCCNPEYDGFIL--SAGTDS--TVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFA  331 (346)
Q Consensus       257 -~v~~~~~~~~~l~--s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  331 (346)
                       .+.|+|+| ..|+  +...++  .|.+||+..                   ++ ...+..+...+..+.++ +++.+++
T Consensus       315 ~~~~~spdg-~~l~~~~~~~~g~~~l~~~~~~~-------------------~~-~~~lt~~~~~v~~~~~~-d~~~i~~  372 (719)
T 1z68_A          315 STPVFSYDA-ISYYKIFSDKDGYKHIHYIKDTV-------------------EN-AIQITSGKWEAINIFRV-TQDSLFY  372 (719)
T ss_dssp             CCCEECTTS-SCEEEEEECTTSCEEEEEESSCS-------------------TT-CEECSCSSSCEEEEEEE-CSSEEEE
T ss_pred             CccEECCCC-CeEEEEEEccCCceEEEEEECCC-------------------Cc-eEecccCceEEEEEEEE-eCCEEEE
Confidence             88999999 5443  344555  566667665                   33 34455555557777777 7775555


Q ss_pred             Eeec----CCeEEEeeec
Q 019059          332 SLSY----DGRVRNHMLE  345 (346)
Q Consensus       332 s~~~----d~~v~vw~~~  345 (346)
                      ++..    ++..++|.++
T Consensus       373 ~~~~~~~~~~~~~l~~~~  390 (719)
T 1z68_A          373 SSNEFEEYPGRRNIYRIS  390 (719)
T ss_dssp             EESCGGGCTTCBEEEEEE
T ss_pred             EEecCCCCCceEEEEEEe
Confidence            5544    4788888763

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.84  E-value=2.7e-18  Score=144.49  Aligned_cols=243  Identities=9%  Similarity=0.054  Sum_probs=173.0

Q ss_pred             ccceEEeeecCCCCceEEEEeecCCc------------------------ceEEEEecCcccCCCCCccceeeeeee-cc
Q 019059           65 PNEIWDLSSCPFDQRIFSTVFSTGES------------------------YGAAIWQIPELYGQLNSPQLERIAALD-AH  119 (346)
Q Consensus        65 ~~~v~~~~~~~~~~~l~~~~~~~~~d------------------------~~i~vw~~~~~~~~~~~~~~~~~~~~~-~~  119 (346)
                      -+.+.+++++|+++.+++.    ..+                        +.|.+||..         +++.+..+. .+
T Consensus        23 l~~v~~va~d~~G~l~v~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~---------~g~~~~~~~~~~   89 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFH----RGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPN---------NAEILQSSGKNL   89 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEE----CTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTT---------TCCEEEEECTTT
T ss_pred             cCCceEEEECCCCCEEEEe----CCCCeEEeeccCcceeecccccccccCCcEEEEECC---------CCeEEeccCCCc
Confidence            3679999999998766654    233                        468999976         455554443 33


Q ss_pred             CCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeec-c----cCCCceeeEEEEeCC-CCCcEEEEe-cCCeE
Q 019059          120 VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK-Q----SSGMLHYLSGGAWDP-HDVNAVAAT-CESSV  192 (346)
Q Consensus       120 ~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~-~----~~~~~~~v~~~~~~~-~~~~l~~~~-~d~~i  192 (346)
                      -.....++++++|+ ++++...++.|++||............. .    ..++.....+++++| ++..+++.+ .++.|
T Consensus        90 ~~~p~gia~d~~g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I  168 (329)
T 3fvz_A           90 FYLPHGLSIDTDGN-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRI  168 (329)
T ss_dssp             CSSEEEEEECTTSC-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEE
T ss_pred             cCCceEEEECCCCC-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeE
Confidence            45788999999998 5666666899999998643212222111 0    023344688999999 666666665 58999


Q ss_pred             EEEEccCCCccceee---------ccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeec--CCCcceEEE
Q 019059          193 QFWDLRSMGKTNSIE---------HAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP--GHTHWTWAV  258 (346)
Q Consensus       193 ~i~d~~~~~~~~~~~---------~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~v~~v  258 (346)
                      ++|| .+++....+.         .++   +..++++|++..++++...++.|++||..+ .+.+..+.  .+...+..+
T Consensus       169 ~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~-G~~~~~~~~~~~~~~~~~~  246 (329)
T 3fvz_A          169 VQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDT-KEFVREIKHASFGRNVFAI  246 (329)
T ss_dssp             EEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTT-CCEEEEECCTTTTTCEEEE
T ss_pred             EEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCC-CcEEEEEeccccCCCccee
Confidence            9999 4566555442         112   899999999444888888899999999985 44566653  455678899


Q ss_pred             EeCCCCCcEEEE-------ecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccc---ccccceeeEEEeCCCCCc
Q 019059          259 CCNPEYDGFILS-------AGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSY---SDYEDSVYGLAWSSREPW  328 (346)
Q Consensus       259 ~~~~~~~~~l~s-------~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~  328 (346)
                      +++| + ..+.+       ...+..|++||..+                   ++.+..+   ..+...+.+|+++|+|. 
T Consensus       247 ~~~p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~-------------------g~~~~~~~~~~~~~~~p~~ia~~~dG~-  304 (329)
T 3fvz_A          247 SYIP-G-FLFAVNGKPYFGDQEPVQGFVMNFSS-------------------GEIIDVFKPVRKHFDMPHDIVASEDGT-  304 (329)
T ss_dssp             EEET-T-EEEEEECCCCTTCSCCCCEEEEETTT-------------------CCEEEEECCSSSCCSSEEEEEECTTSE-
T ss_pred             eecC-C-EEEEeCCCEEeccCCCcEEEEEEcCC-------------------CeEEEEEcCCCCccCCeeEEEECCCCC-
Confidence            9999 4 33333       33455899999987                   6766665   35666789999999994 


Q ss_pred             EEEEeecCCeEEEeeec
Q 019059          329 IFASLSYDGRVRNHMLE  345 (346)
Q Consensus       329 ~l~s~~~d~~v~vw~~~  345 (346)
                      ++++...+++|++|+++
T Consensus       305 lyvad~~~~~I~~~~~~  321 (329)
T 3fvz_A          305 VYIGDAHTNTVWKFTLT  321 (329)
T ss_dssp             EEEEESSSCCEEEEEEE
T ss_pred             EEEEECCCCEEEEEeCC
Confidence            99999999999999985

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.84  E-value=4.4e-19  Score=152.75  Aligned_cols=278  Identities=10%  Similarity=0.017  Sum_probs=173.6

Q ss_pred             ccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcc
Q 019059           22 VKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPEL  101 (346)
Q Consensus        22 ~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~  101 (346)
                      ..+++++.++++.... ....+++++++...  ... ....++...+..++|+|+++.|+.+    +.++.|.+||+.  
T Consensus        41 ~~~SpDg~~l~~~~~~-~g~~~l~~~d~~~g--~~~-~lt~~~~~~~~~~~~spdg~~l~~~----~~~~~l~~~d~~--  110 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAF-DGPWNYYLLDLNTQ--VAT-QLTEGRGDNTFGGFLSPDDDALFYV----KDGRNLMRVDLA--  110 (388)
T ss_dssp             CCBCTTSCEEEEEECT-TSSCEEEEEETTTC--EEE-ECCCSSCBCSSSCEECTTSSEEEEE----ETTTEEEEEETT--
T ss_pred             ccCCCCCCEEEEEEcC-CCCceEEEEeCCCC--ceE-EeeeCCCCCccceEEcCCCCEEEEE----eCCCeEEEEECC--
Confidence            4578899988887531 12235666665543  222 3334455556678999999999886    366799999998  


Q ss_pred             cCCCCCccceeeeeeeccCCceEEEE--eecCCCCcEEEE----------------------ecCCeEEEEEcCCCCCCc
Q 019059          102 YGQLNSPQLERIAALDAHVGKINCVL--WWSSGRHDKLVS----------------------IDEENIFLWSLDCSNKNA  157 (346)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~----------------------~~d~~i~vwd~~~~~~~~  157 (346)
                             .++....+..+...+....  ++++++. ++..                      ..+..|.+||+.+++. .
T Consensus       111 -------~g~~~~~~~~~~~~~~~~~~~~~~dg~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~-~  181 (388)
T 3pe7_A          111 -------TLEENVVYQVPAEWVGYGTWVANSDCTK-LVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES-T  181 (388)
T ss_dssp             -------TCCEEEEEECCTTEEEEEEEEECTTSSE-EEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE-E
T ss_pred             -------CCcceeeeechhhcccccceeECCCCCe-eccccccCcccccccccchhhhhhccCCcceEEEEECCCCce-E
Confidence                   4454444555555554444  4788884 3221                      1246899999987642 2


Q ss_pred             eeeecccCCCceeeEEEEeCC-CCCcEEEEecC------CeEEEEEccCCCccceeecc--c-eeEEEeCCCCCcEEEEe
Q 019059          158 QVQSKQSSGMLHYLSGGAWDP-HDVNAVAATCE------SSVQFWDLRSMGKTNSIEHA--H-VRNVDYDTKKKHLLVTA  227 (346)
Q Consensus       158 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~--~-v~~~~~~~~~~~~l~~~  227 (346)
                      .+..     +...+..++|+| +++.|+....+      ..|.++|+..++........  . +..++|+|+|+.+++++
T Consensus       182 ~l~~-----~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~  256 (388)
T 3pe7_A          182 VILQ-----ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVS  256 (388)
T ss_dssp             EEEE-----ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEE
T ss_pred             Eeec-----CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEe
Confidence            2222     122578899999 99988877653      37888888765433222222  2 77899999998444444


Q ss_pred             cCCC----eEEEEEcccCCc-ceeeecCCCcc---eEEEEeCCCCCcEEEEe---------cCCCeEEEEecCCCCCCCC
Q 019059          228 ADES----GIHLWDLRMLKA-PIQELPGHTHW---TWAVCCNPEYDGFILSA---------GTDSTVNLWLVSTSNHDEL  290 (346)
Q Consensus       228 ~~dg----~i~i~d~~~~~~-~~~~~~~~~~~---v~~v~~~~~~~~~l~s~---------~~d~~i~iwd~~~~~~~~~  290 (346)
                      ..++    .|++||+..... .+..+..+...   ...+.|+|+| ..|+..         ..+..|++||+.+      
T Consensus       257 ~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~i~~~d~~~------  329 (388)
T 3pe7_A          257 YLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDG-SDAPVDVQDDSGYKIENDPFLYVFNMKN------  329 (388)
T ss_dssp             EETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEE-CCC------------CCCCEEEEEETTT------
T ss_pred             cCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCC-CcceeEeeeccccccCCCCEEEEEeccC------
Confidence            3322    399999986331 22223221111   1224799999 655543         4566899999987      


Q ss_pred             CcccccCCccccccccccccccccc-----------eeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059          291 PSESLVESPNQRANSLLNSYSDYED-----------SVYGLAWSSREPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~~l~s~~~d~~v~vw~~  344 (346)
                                   ++. ..+..+..           .+.+++|+|+|+.++++...++...||.+
T Consensus       330 -------------~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~  380 (388)
T 3pe7_A          330 -------------GTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA  380 (388)
T ss_dssp             -------------TEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             -------------Cce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence                         332 33444443           47889999999866666667887777765

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.82  E-value=3.2e-17  Score=135.15  Aligned_cols=236  Identities=11%  Similarity=0.106  Sum_probs=165.2

Q ss_pred             ccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeee------ccCCceEEEEee-cCCCCc
Q 019059           63 SHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD------AHVGKINCVLWW-SSGRHD  135 (346)
Q Consensus        63 ~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~-~~~~~~  135 (346)
                      ++-..+.+++++|++..+++.    ..++.|.+|+..          .+.+..+.      .+...+..+++. +++. +
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~----~~~~~i~~~d~~----------g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~-l   91 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVAD----TNNHRIQIFDKE----------GRFKFQFGECGKRDSQLLYPNRVAVVRNSGD-I   91 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEE----GGGTEEEEECTT----------SCEEEEECCBSSSTTCBSSEEEEEEETTTTE-E
T ss_pred             CccCCCceEEECCCCCEEEEE----CCCCEEEEECCC----------CcEEEEecccCCCcccccCceEEEEEcCCCe-E
Confidence            455678999999988755553    567899999975          23333332      234568899995 5665 4


Q ss_pred             EEEEec-CCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeec-cc---
Q 019059          136 KLVSID-EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH-AH---  210 (346)
Q Consensus       136 ~~~~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~---  210 (346)
                      +++... ++.|.+||.. ++....+ .   ..+...+.+++++|+++.+++...++.|.+||.. ++....+.. .+   
T Consensus        92 ~v~~~~~~~~i~~~d~~-g~~~~~~-~---~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~  165 (286)
T 1q7f_A           92 IVTERSPTHQIQIYNQY-GQFVRKF-G---ATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEF  165 (286)
T ss_dssp             EEEECGGGCEEEEECTT-SCEEEEE-C---TTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSS
T ss_pred             EEEcCCCCCEEEEECCC-CcEEEEe-c---CccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCC
Confidence            444433 7899999943 3322221 1   1223367899999999866666678899999965 454444432 22   


Q ss_pred             eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCC--CcceEEEEeCCCCCcEEEEecCCC-eEEEEecCCCCC
Q 019059          211 VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGH--THWTWAVCCNPEYDGFILSAGTDS-TVNLWLVSTSNH  287 (346)
Q Consensus       211 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~v~~v~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~  287 (346)
                      +..++++|++. ++++...++.|++||..  ...+..+..+  ...+..++++++| .++++...++ .|.+||..    
T Consensus       166 p~~i~~~~~g~-l~v~~~~~~~i~~~~~~--g~~~~~~~~~g~~~~p~~i~~d~~G-~l~v~~~~~~~~i~~~~~~----  237 (286)
T 1q7f_A          166 PNGVVVNDKQE-IFISDNRAHCVKVFNYE--GQYLRQIGGEGITNYPIGVGINSNG-EILIADNHNNFNLTIFTQD----  237 (286)
T ss_dssp             EEEEEECSSSE-EEEEEGGGTEEEEEETT--CCEEEEESCTTTSCSEEEEEECTTC-CEEEEECSSSCEEEEECTT----
T ss_pred             cEEEEECCCCC-EEEEECCCCEEEEEcCC--CCEEEEEccCCccCCCcEEEECCCC-CEEEEeCCCCEEEEEECCC----
Confidence            89999999997 88887888999999975  3345555433  3678999999999 8888887776 99999965    


Q ss_pred             CCCCcccccCCcccccccccccccccc--ceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          288 DELPSESLVESPNQRANSLLNSYSDYE--DSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                                      ++.+..+..+.  ..+.+++++|+|. ++++ +.|++|++|++.
T Consensus       238 ----------------g~~~~~~~~~~~~~~~~~i~~~~~g~-l~vs-~~~~~v~v~~~~  279 (286)
T 1q7f_A          238 ----------------GQLISALESKVKHAQCFDVALMDDGS-VVLA-SKDYRLYIYRYV  279 (286)
T ss_dssp             ----------------SCEEEEEEESSCCSCEEEEEEETTTE-EEEE-ETTTEEEEEECS
T ss_pred             ----------------CCEEEEEcccCCCCcceeEEECCCCc-EEEE-CCCCeEEEEEcc
Confidence                            34444444332  2378999999996 7777 579999999874

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.82  E-value=6.7e-18  Score=144.22  Aligned_cols=247  Identities=8%  Similarity=-0.039  Sum_probs=153.9

Q ss_pred             eccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCce-EEEEe------ecC----C
Q 019059           21 DVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRI-FSTVF------STG----E   89 (346)
Q Consensus        21 ~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~~~~~------~~~----~   89 (346)
                      .+.+++++..++++..    + .+.+|++...+..........+ +.+.+++|+|+++.+ +.++.      .+.    .
T Consensus        44 ~~a~spdg~~l~~~~~----~-~v~~~~~~~~g~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~  117 (365)
T 1jof_A           44 WMTFDHERKNIYGAAM----K-KWSSFAVKSPTEIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF  117 (365)
T ss_dssp             EEEECTTSSEEEEEEB----T-EEEEEEEEETTEEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred             EEEECCCCCEEEEEcc----c-eEEEEEECCCCCEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecC
Confidence            4556777777766543    2 7889998733322211111111 346679999999863 33320      001    5


Q ss_pred             cceEEEEecCcccCCCCCccceeeeeee----ccCCceEEEEeecCCCCcEEEEecCCeEEEEEcC-CCCCCceeeeccc
Q 019059           90 SYGAAIWQIPELYGQLNSPQLERIAALD----AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLD-CSNKNAQVQSKQS  164 (346)
Q Consensus        90 d~~i~vw~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~-~~~~~~~~~~~~~  164 (346)
                      ++.+.+|++..        .++....+.    .+...+.+++|+|+|++++++...++.|++|+++ +++.. .......
T Consensus       118 ~g~v~v~~~~~--------~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~-~~~~~~~  188 (365)
T 1jof_A          118 AGYGNVFSVSE--------TGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVE-LVGSVDA  188 (365)
T ss_dssp             CCEEEEEEECT--------TCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEE-EEEEEEC
T ss_pred             CceEEEEccCC--------CCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEE-EeeeEec
Confidence            78899999862        122222222    2456789999999999633333346899999998 44321 1111111


Q ss_pred             CCCceeeEEEEeCCCCCcEEEEec-CCeEEEEEcc--CCCccc------eeec-----c-------ceeEEE-eCCCCCc
Q 019059          165 SGMLHYLSGGAWDPHDVNAVAATC-ESSVQFWDLR--SMGKTN------SIEH-----A-------HVRNVD-YDTKKKH  222 (346)
Q Consensus       165 ~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~--~~~~~~------~~~~-----~-------~v~~~~-~~~~~~~  222 (346)
                      ..+...+..++|+|+++.+++++. ++.|.+|++.  +++...      .+..     .       .+..++ |+|+|+ 
T Consensus       189 ~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~-  267 (365)
T 1jof_A          189 PDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGK-  267 (365)
T ss_dssp             SSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSS-
T ss_pred             CCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCC-
Confidence            111236889999999999888875 7899999875  454321      1111     1       367899 999998 


Q ss_pred             EEEEecC-CC-----eEEEEEcccCCccee---eecCCCcceEEEEeCC---CCCcEEEEecC-CCeEEEEecCC
Q 019059          223 LLVTAAD-ES-----GIHLWDLRMLKAPIQ---ELPGHTHWTWAVCCNP---EYDGFILSAGT-DSTVNLWLVST  284 (346)
Q Consensus       223 ~l~~~~~-dg-----~i~i~d~~~~~~~~~---~~~~~~~~v~~v~~~~---~~~~~l~s~~~-d~~i~iwd~~~  284 (346)
                      .|+++.. +.     .|.+|++...+....   ....+...+..++|+|   +| ++|++++. ++.|.+|++..
T Consensus       268 ~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg-~~l~v~~~~~~~v~v~~~~~  341 (365)
T 1jof_A          268 YMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD-EWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             EEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT-TEEEEECSSSCEEEEEEEET
T ss_pred             EEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCC-CEEEEEEcCCCeEEEEEEch
Confidence            4444433 23     899999963233222   1333455677889999   78 88888876 48999999986

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.81  E-value=8.1e-19  Score=163.52  Aligned_cols=235  Identities=8%  Similarity=0.024  Sum_probs=155.0

Q ss_pred             ceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCc-----eEEEEeecCCCCcEEEEec
Q 019059           67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGK-----INCVLWWSSGRHDKLVSID  141 (346)
Q Consensus        67 ~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~-----i~~~~~~~~~~~~~~~~~~  141 (346)
                      ....++|+|+++.+++     + |+.|++||+.         +++....+..|...     ...+.|||||+++++ ++.
T Consensus        18 ~~~~~~w~~dg~~~~~-----~-~~~i~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~-~~~   81 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYK-----Q-ENNILVFNAE---------YGNSSVFLENSTFDEFGHSINDYSISPDGQFILL-EYN   81 (740)
T ss_dssp             CCCCEEECSSSEEEEE-----E-TTEEEEEETT---------TCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEE-EEE
T ss_pred             cccccEECCCCcEEEE-----c-CCcEEEEECC---------CCceEEEEechhhhhhcccccceEECCCCCEEEE-EEC
Confidence            4568999999966555     2 7899999998         45555556666432     244789999996444 333


Q ss_pred             C---------CeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc--
Q 019059          142 E---------ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--  210 (346)
Q Consensus       142 d---------~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--  210 (346)
                      +         +.+.+||+.+++.. .+     ..+...+...+|+|||+.|+.+ .++.|++||+.+++..+....++  
T Consensus        82 ~~~~~r~~~~~~~~~~d~~~~~~~-~l-----~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~  154 (740)
T 4a5s_A           82 YVKQWRHSYTASYDIYDLNKRQLI-TE-----ERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKED  154 (740)
T ss_dssp             EEECSSSCEEEEEEEEETTTTEEC-CS-----SCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTT
T ss_pred             CeeeEEEccceEEEEEECCCCcEE-Ec-----ccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCcc
Confidence            3         67789999876532 11     1233468899999999999887 47899999998876543222122  


Q ss_pred             -e-----------------eEEEeCCCCCcEEEEecCC-C-----------------------------------eEEEE
Q 019059          211 -V-----------------RNVDYDTKKKHLLVTAADE-S-----------------------------------GIHLW  236 (346)
Q Consensus       211 -v-----------------~~~~~~~~~~~~l~~~~~d-g-----------------------------------~i~i~  236 (346)
                       +                 ..+.|+|||+ .|+.++.| +                                   .|++|
T Consensus       155 ~~~~g~~~~v~~ee~~~~~~~~~wSpDg~-~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~  233 (740)
T 4a5s_A          155 IIYNGITDWVYEEEVFSAYSALWWSPNGT-FLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVV  233 (740)
T ss_dssp             TEEESBCCHHHHHHTSSSSBCEEECTTSS-EEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred             ceecCcccccccchhcCCCcceEECCCCC-EEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEE
Confidence             1                 3489999999 56554321 1                                   57788


Q ss_pred             Eccc---CCc-ceeeec------CCCcceEEEEeCCCCCcEEEEec----CCCeEEEEecCCCCCCCCCcccccCCcccc
Q 019059          237 DLRM---LKA-PIQELP------GHTHWTWAVCCNPEYDGFILSAG----TDSTVNLWLVSTSNHDELPSESLVESPNQR  302 (346)
Q Consensus       237 d~~~---~~~-~~~~~~------~~~~~v~~v~~~~~~~~~l~s~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  302 (346)
                      |+..   ... ....+.      +|...+..++|+|+| ++++...    .+..|++||+.+                  
T Consensus       234 d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg-~~~~~~~~r~~~~~~i~~~d~~t------------------  294 (740)
T 4a5s_A          234 NTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQE-RISLQWLRRIQNYSVMDICDYDE------------------  294 (740)
T ss_dssp             ETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETT-EEEEEEEESSTTEEEEEEEEEET------------------
T ss_pred             ECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCC-eEEEEEeCCCCCEEEEEEEECCC------------------
Confidence            8875   321 223333      377789999999999 7555442    234799999987                  


Q ss_pred             ccc----c--cccc--ccccceee-----EEEeCCCCCcEEEEee-cCC--eEEEeeec
Q 019059          303 ANS----L--LNSY--SDYEDSVY-----GLAWSSREPWIFASLS-YDG--RVRNHMLE  345 (346)
Q Consensus       303 ~~~----~--~~~~--~~~~~~v~-----~~~~~~~~~~~l~s~~-~d~--~v~vw~~~  345 (346)
                       ++    +  +..+  ..|..+|.     .+.|+|||+.++...+ .+|  .|++|+++
T Consensus       295 -g~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~  352 (740)
T 4a5s_A          295 -SSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQID  352 (740)
T ss_dssp             -TTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETT
T ss_pred             -CccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECC
Confidence             43    1  2222  34555554     7899999984442554 344  57777764

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.81  E-value=3.5e-18  Score=157.52  Aligned_cols=252  Identities=10%  Similarity=-0.039  Sum_probs=163.8

Q ss_pred             EeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceE---------EEEe
Q 019059           58 CEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKIN---------CVLW  128 (346)
Q Consensus        58 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~---------~~~~  128 (346)
                      ...+.+|...+..++|+++.  ++.+....+.++...||...         .......+..+...+.         ...|
T Consensus        16 ~~~~~~~~~~~~~~~~s~~~--~~~~~~~~~~~~~~~l~~~~---------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~   84 (662)
T 3azo_A           16 AALVASRSGRPACVGAVGDE--VWWVAPRPAEAGRATLVRRR---------ADGAEESALPAPWNVRNRVFEYSGFPWAG   84 (662)
T ss_dssp             HHHHHHTCSCCEEEEEETTE--EEEEEEETTTTTEEEEEEEC---------TTSCEEESSCTTCCBCCCGGGTCCCCEEE
T ss_pred             HHHHhhcCCccceeEEcCCe--EEEEecCcccCCcEEEEEEC---------CCCCcceeCCCCccccccccccCCcccee
Confidence            34566788999999999764  33332223567789999864         2233445555655555         5666


Q ss_pred             e--cCCCC-cEEEEecCCeEEEEEcC--CCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecC----------CeEE
Q 019059          129 W--SSGRH-DKLVSIDEENIFLWSLD--CSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE----------SSVQ  193 (346)
Q Consensus       129 ~--~~~~~-~~~~~~~d~~i~vwd~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------~~i~  193 (346)
                      +  |||+. ++++...+..|.++++.  +......+.......+...+..++|+|||+.|++++.+          ..|+
T Consensus        85 ~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~  164 (662)
T 3azo_A           85 VPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLA  164 (662)
T ss_dssp             ECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEE
T ss_pred             eeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEE
Confidence            6  99996 44444345677777765  20222222221111144578899999999999988876          5899


Q ss_pred             EEEccC------CCccceee-ccc--eeEEEeCCCCCcEEEEecCC--------CeEEEEEcccCC---cceeeecCCCc
Q 019059          194 FWDLRS------MGKTNSIE-HAH--VRNVDYDTKKKHLLVTAADE--------SGIHLWDLRMLK---APIQELPGHTH  253 (346)
Q Consensus       194 i~d~~~------~~~~~~~~-~~~--v~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~---~~~~~~~~~~~  253 (346)
                      +||+.+      ++. ..+. ..+  +..++|+|||+ .|+.++.+        ..|++||+...+   ........|..
T Consensus       165 ~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~-~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~  242 (662)
T 3azo_A          165 AVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGR-QAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEE  242 (662)
T ss_dssp             EEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSS-EEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTB
T ss_pred             EEECCCCccccCCce-eEEEecCCCcccCceECCCCC-EEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCc
Confidence            999987      443 3333 233  88899999999 56555433        479999998313   33333344578


Q ss_pred             ceEEEEeCCCCCcEEEEecCCC--eEEEEecCCCCCCCCCcccccCCccccccccccccccccce--------eeEEEeC
Q 019059          254 WTWAVCCNPEYDGFILSAGTDS--TVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDS--------VYGLAWS  323 (346)
Q Consensus       254 ~v~~v~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------v~~~~~~  323 (346)
                      .+..+.|+|+| +++++++.++  .|.+||+..                   ++.......+...        +..++|+
T Consensus       243 ~~~~~~~spdg-~l~~~~~~~~~~~l~~~~~~~-------------------~~~~~l~~~~~~~~~p~w~~~~~~~~~~  302 (662)
T 3azo_A          243 AIAQAEWAPDG-SLIVATDRTGWWNLHRVDPAT-------------------GAATQLCRREEEFAGPLWTPGMRWFAPL  302 (662)
T ss_dssp             CEEEEEECTTS-CEEEEECTTSSCEEEEECTTT-------------------CCEEESSCCSSBSSCCCCSTTCCSEEEC
T ss_pred             eEcceEECCCC-eEEEEECCCCCeEEEEEECCC-------------------CceeecccccccccCccccccCceEeEe
Confidence            89999999999 6888888888  566666544                   2222222222211        4678899


Q ss_pred             CCCCcEEEEeecCCeEEEeee
Q 019059          324 SREPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       324 ~~~~~~l~s~~~d~~v~vw~~  344 (346)
                      |++. ++++++. +.++||.+
T Consensus       303 ~~~~-~~~~~~~-~~~~l~~~  321 (662)
T 3azo_A          303 ANGL-IAVVHGK-GAAVLGIL  321 (662)
T ss_dssp             TTSC-EEEEEBS-SSCEEEEE
T ss_pred             CCCE-EEEEEEc-CccEEEEE
Confidence            9886 8888888 99999944

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.81  E-value=9.9e-17  Score=148.84  Aligned_cols=287  Identities=10%  Similarity=0.060  Sum_probs=180.9

Q ss_pred             CCcceEEEeecccCC-CCeEEEEEecCCCCeEEEe--e-eeccccceEEeeecCCCCceEEEEeecCCc-ceEEEEecCc
Q 019059           26 TDHTSFLTGTLSLKE-ENEVHLLRLSSGGTELICE--G-LFSHPNEIWDLSSCPFDQRIFSTVFSTGES-YGAAIWQIPE  100 (346)
Q Consensus        26 ~~~~~~~~g~~~~~~-~~~i~~~~~~~~~~~~~~~--~-~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d-~~i~vw~~~~  100 (346)
                      +++.+++......+. ...++..+.......+...  . ..+|...+..++||||++.|+.+...+|.+ ..|++||+. 
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~-  159 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD-  159 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT-
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECC-
Confidence            567777665443222 1234444332222221111  1 123445688999999999998876443333 489999998 


Q ss_pred             ccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCe----------------EEEEEcCCCCCCceeeeccc
Q 019059          101 LYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEEN----------------IFLWSLDCSNKNAQVQSKQS  164 (346)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~----------------i~vwd~~~~~~~~~~~~~~~  164 (346)
                              .++.+..... ...+..++|+|||+.+++++ .++.                |++|++.++.....+... .
T Consensus       160 --------tg~~~~~~~~-~~~~~~~~wspDg~~l~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~-~  228 (710)
T 2xdw_A          160 --------GAKELPDVLE-RVKFSCMAWTHDGKGMFYNA-YPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAE-F  228 (710)
T ss_dssp             --------TTEEEEEEEE-EECSCCEEECTTSSEEEEEE-CCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEEC-C
T ss_pred             --------CCCCCccccc-CcccceEEEEeCCCEEEEEE-ECCccccccccccccCCCCEEEEEECCCCcccceEEec-c
Confidence                    4444432212 22367899999999744444 3433                999999876532222221 1


Q ss_pred             CCCceeeEEEEeCCCCCcEEEEec-----CCeEEEEEccC------CC-ccceeeccc--eeEEEeCCCCCcEEEEecCC
Q 019059          165 SGMLHYLSGGAWDPHDVNAVAATC-----ESSVQFWDLRS------MG-KTNSIEHAH--VRNVDYDTKKKHLLVTAADE  230 (346)
Q Consensus       165 ~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~i~d~~~------~~-~~~~~~~~~--v~~~~~~~~~~~~l~~~~~d  230 (346)
                      ..+...+..+.|+|++++|+..+.     +..|++||+.+      +. ....+....  +.. .|+|++..+++.+..+
T Consensus       229 ~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~  307 (710)
T 2xdw_A          229 PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRH  307 (710)
T ss_dssp             TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTT
T ss_pred             CCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCC
Confidence            223335778999999999888764     56899999987      43 344444222  433 5788888555554433


Q ss_pred             ---CeEEEEEcccCCc-ceeeecCCCc--ceEEEEeCCCCCcEEEEecCCCe--EEEEecCCCCCCCCCcccccCCcccc
Q 019059          231 ---SGIHLWDLRMLKA-PIQELPGHTH--WTWAVCCNPEYDGFILSAGTDST--VNLWLVSTSNHDELPSESLVESPNQR  302 (346)
Q Consensus       231 ---g~i~i~d~~~~~~-~~~~~~~~~~--~v~~v~~~~~~~~~l~s~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~  302 (346)
                         +.|.+||+..... ....+..|..  .+..+.|++++ .++++...|+.  |.+||+..                  
T Consensus       308 ~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~lv~~~~~~g~~~l~~~~~~~------------------  368 (710)
T 2xdw_A          308 SPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSN-FLVLCYLHDVKNTLQLHDLAT------------------  368 (710)
T ss_dssp             CTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTT-EEEEEEEETTEEEEEEEETTT------------------
T ss_pred             CCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCC-EEEEEEEECCEEEEEEEECCC------------------
Confidence               3799999876431 2345555544  67889999777 88889888885  55667655                  


Q ss_pred             ccccccccccccceeeEEEeCCCCCcEEEEee---cCCeEEEeeec
Q 019059          303 ANSLLNSYSDYEDSVYGLAWSSREPWIFASLS---YDGRVRNHMLE  345 (346)
Q Consensus       303 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~---~d~~v~vw~~~  345 (346)
                       ++.+..+..+...+..++++|+++.++++.+   ..+.|++||+.
T Consensus       369 -g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~  413 (710)
T 2xdw_A          369 -GALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT  413 (710)
T ss_dssp             -CCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETT
T ss_pred             -CCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECC
Confidence             5555666666777899999999875555544   34679999874

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.81  E-value=2.8e-18  Score=148.01  Aligned_cols=277  Identities=8%  Similarity=0.021  Sum_probs=167.4

Q ss_pred             eeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccc-eEEeeecCCCCceEEEEeecCCcceEEEEe
Q 019059           19 ISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNE-IWDLSSCPFDQRIFSTVFSTGESYGAAIWQ   97 (346)
Q Consensus        19 ~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~   97 (346)
                      +....+++++.++++.... .....++++++...  ..  ..+..+... ...+.|+|+++.|+.+.    .++.|.+|+
T Consensus        38 ~~~~~~SpdG~~l~~~~~~-~g~~~l~~~d~~~~--~~--~~l~~~~~~~~~~~~~spdg~~l~~~~----~~~~l~~~d  108 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDF-DGNRNYYLLNLETQ--QA--VQLTEGKGDNTFGGFISTDERAFFYVK----NELNLMKVD  108 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECT-TSSCEEEEEETTTT--EE--EECCCSSCBCTTTCEECTTSSEEEEEE----TTTEEEEEE
T ss_pred             eecCcCCCCCCEEEEEEec-CCCceEEEEECCCC--cE--EEeecCCCCccccceECCCCCEEEEEE----cCCcEEEEE
Confidence            3445678899888776432 22346777765543  22  233333333 33478999999998863    566899999


Q ss_pred             cCcccCCCCCccceeeeeeeccCCceEE-------------------EEeecCCCCcEEEE----ecCCeEEEEEcCCCC
Q 019059           98 IPELYGQLNSPQLERIAALDAHVGKINC-------------------VLWWSSGRHDKLVS----IDEENIFLWSLDCSN  154 (346)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~-------------------~~~~~~~~~~~~~~----~~d~~i~vwd~~~~~  154 (346)
                      +.         ..+.......+......                   +.|+|+++.+++..    ..+..|.+||+.+++
T Consensus       109 ~~---------~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~  179 (396)
T 3c5m_A          109 LE---------TLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGE  179 (396)
T ss_dssp             TT---------TCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCC
T ss_pred             CC---------CCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCc
Confidence            87         33333333323332222                   35678887544332    346789999998755


Q ss_pred             CCceeeecccCCCceeeEEEEeCC-CCCcEEEEecC------CeEEEEEccCCCccceeec--cc-eeEEEeCCCCCcEE
Q 019059          155 KNAQVQSKQSSGMLHYLSGGAWDP-HDVNAVAATCE------SSVQFWDLRSMGKTNSIEH--AH-VRNVDYDTKKKHLL  224 (346)
Q Consensus       155 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~--~~-v~~~~~~~~~~~~l  224 (346)
                      .. .+..     +...+..+.|+| ++..++..+.+      ..|.+||+..++.......  .. +..++|+|+++.++
T Consensus       180 ~~-~~~~-----~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~  253 (396)
T 3c5m_A          180 LE-VIHQ-----DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMA  253 (396)
T ss_dssp             EE-EEEE-----ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEE
T ss_pred             EE-eecc-----CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEE
Confidence            32 2221     223678899999 78777766543      4688999876653322221  22 88899999998444


Q ss_pred             EEecCC----CeEEEEEcccCCcceeeecCCCcceEEEEeCC-CCCcEEEEec----------------CCCeEEEEecC
Q 019059          225 VTAADE----SGIHLWDLRMLKAPIQELPGHTHWTWAVCCNP-EYDGFILSAG----------------TDSTVNLWLVS  283 (346)
Q Consensus       225 ~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~-~~~~~l~s~~----------------~d~~i~iwd~~  283 (346)
                      +++..+    +.|++||+.... . ..+.... ... +.|+| +| .++++++                .+..|++||+.
T Consensus       254 ~~~~~~~~~~~~l~~~d~~~g~-~-~~l~~~~-~~~-~~~s~~dg-~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~  328 (396)
T 3c5m_A          254 YVSYFKGQTDRVIYKANPETLE-N-EEVMVMP-PCS-HLMSNFDG-SLMVGDGCDAPVDVADADSYNIENDPFLYVLNTK  328 (396)
T ss_dssp             EEEEETTTCCEEEEEECTTTCC-E-EEEEECC-SEE-EEEECSSS-SEEEEEECCC----------CCCCCCEEEEEETT
T ss_pred             EEecCCCCccceEEEEECCCCC-e-EEeeeCC-CCC-CCccCCCC-ceEEEecCCcceeeccccccccCCCCcEEEEecc
Confidence            443222    449999997632 2 2222112 223 88999 99 7777654                34789999998


Q ss_pred             CCCCCCCCcccccCCccccccccccccccccc-----------eeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059          284 TSNHDELPSESLVESPNQRANSLLNSYSDYED-----------SVYGLAWSSREPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~~l~s~~~d~~v~vw~~  344 (346)
                      .                   ++. ..+..+..           .+..++|+|+++.++++...++...+|.+
T Consensus       329 ~-------------------~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~  380 (396)
T 3c5m_A          329 A-------------------KSA-QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA  380 (396)
T ss_dssp             T-------------------TBC-CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             c-------------------Cce-EEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence            6                   332 23333332           25678999999855555555666666654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.80  E-value=1.2e-17  Score=153.84  Aligned_cols=281  Identities=11%  Similarity=0.021  Sum_probs=170.5

Q ss_pred             EeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceE---------Eeeec--CCCCc-eEEEEe
Q 019059           18 CISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIW---------DLSSC--PFDQR-IFSTVF   85 (346)
Q Consensus        18 ~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~---------~~~~~--~~~~~-l~~~~~   85 (346)
                      .+....++++..-++.  .....++...+|.....+.   ...+..|...+.         ...|+  ||++. |+.+  
T Consensus        25 ~~~~~~~s~~~~~~~~--~~~~~~~~~~l~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~--   97 (662)
T 3azo_A           25 RPACVGAVGDEVWWVA--PRPAEAGRATLVRRRADGA---EESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT--   97 (662)
T ss_dssp             CCEEEEEETTEEEEEE--EETTTTTEEEEEEECTTSC---EEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE--
T ss_pred             ccceeEEcCCeEEEEe--cCcccCCcEEEEEECCCCC---cceeCCCCccccccccccCCccceeeeecCCCeEEEEE--
Confidence            3444445544333332  2223456777777644332   345556666665         56565  99998 7765  


Q ss_pred             ecCCcceEEEEecCcccCCCCCccc-eeeeeeec-----cCCceEEEEeecCCCCcEEEEecC----------CeEEEEE
Q 019059           86 STGESYGAAIWQIPELYGQLNSPQL-ERIAALDA-----HVGKINCVLWWSSGRHDKLVSIDE----------ENIFLWS  149 (346)
Q Consensus        86 ~~~~d~~i~vw~~~~~~~~~~~~~~-~~~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~d----------~~i~vwd  149 (346)
                       ...+..|.++++..        .+ .....+..     |...+..++|+|||+.++ .++.+          ..|++||
T Consensus        98 -~~~~~~l~~~~~~~--------~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~-~~~~~~~~~~~~~~~~~i~~~~  167 (662)
T 3azo_A           98 -HFGDQRLYAFEPDA--------PGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVW-CMAEEFTGEGPSDVRRFLAAVP  167 (662)
T ss_dssp             -BTTTCCEEEECTTS--------TTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEE-EEEEEECSSSTTCEEEEEEEEE
T ss_pred             -ECCCCeEEEEcCCC--------CCCCCCEeccCCccCCCCccccCcEECCCCCEEE-EEEecccCCCCCCceeEEEEEE
Confidence             23344555555420        01 22333434     567889999999999644 44434          5899999


Q ss_pred             cCCC-----CCCceeeecccCCCceeeEEEEeCCCCCcEEEEecC--------CeEEEEEcc-CCC--ccceeecc--c-
Q 019059          150 LDCS-----NKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE--------SSVQFWDLR-SMG--KTNSIEHA--H-  210 (346)
Q Consensus       150 ~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------~~i~i~d~~-~~~--~~~~~~~~--~-  210 (346)
                      +.+.     .....+. .   .+...+..++|+|||+.|+.++.+        ..|++||+. +++  ....+...  . 
T Consensus       168 ~~~~~~~~~~~~~~l~-~---~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~  243 (662)
T 3azo_A          168 LDGSAAADRSAVRELS-D---DAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEA  243 (662)
T ss_dssp             TTSTTTTCGGGSEESS-C---SCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBC
T ss_pred             CCCCccccCCceeEEE-e---cCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCce
Confidence            9862     1122221 0   123467889999999999888754        379999999 562  33333323  2 


Q ss_pred             eeEEEeCCCCCcEEEEecCCC--eEEEEEcccCCcceeeecCCCcc---------eEEEEeCCCCCcEEEEecCCCeEEE
Q 019059          211 VRNVDYDTKKKHLLVTAADES--GIHLWDLRMLKAPIQELPGHTHW---------TWAVCCNPEYDGFILSAGTDSTVNL  279 (346)
Q Consensus       211 v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~---------v~~v~~~~~~~~~l~s~~~d~~i~i  279 (346)
                      +..++|+|+|+ +++++..++  .|.+||+.. +. ...+..+...         +..++|+|++ .++++++. +.++|
T Consensus       244 ~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~-~~-~~~l~~~~~~~~~p~w~~~~~~~~~~~~~-~~~~~~~~-~~~~l  318 (662)
T 3azo_A          244 IAQAEWAPDGS-LIVATDRTGWWNLHRVDPAT-GA-ATQLCRREEEFAGPLWTPGMRWFAPLANG-LIAVVHGK-GAAVL  318 (662)
T ss_dssp             EEEEEECTTSC-EEEEECTTSSCEEEEECTTT-CC-EEESSCCSSBSSCCCCSTTCCSEEECTTS-CEEEEEBS-SSCEE
T ss_pred             EcceEECCCCe-EEEEECCCCCeEEEEEECCC-Cc-eeecccccccccCccccccCceEeEeCCC-EEEEEEEc-CccEE
Confidence            99999999999 888888888  566666543 32 3333322221         4678889999 89999998 99999


Q ss_pred             EecCCCCCCCCCcccccCCccccccccccccccccceeeEE-EeCCCCCcEEEEeecCCeEEEee
Q 019059          280 WLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGL-AWSSREPWIFASLSYDGRVRNHM  343 (346)
Q Consensus       280 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~l~s~~~d~~v~vw~  343 (346)
                      |.+..                  ....+..+..|...+..+ +++++. .++++.+.+....+|.
T Consensus       319 ~~~d~------------------~~~~~~~l~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~i~~  364 (662)
T 3azo_A          319 GILDP------------------ESGELVDAAGPWTEWAATLTVSGTR-AVGVAASPRTAYEVVE  364 (662)
T ss_dssp             EEEET------------------TTTEEEECCSSCCEEEEEEEEETTE-EEEEEEETTEEEEEEE
T ss_pred             EEEEC------------------CCCcEEEecCCCCeEEEEEecCCCE-EEEEEcCCCCCCEEEE
Confidence            94442                  023356666777777777 554432 2444455555555554

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.80  E-value=5.6e-18  Score=145.85  Aligned_cols=247  Identities=8%  Similarity=-0.051  Sum_probs=155.6

Q ss_pred             eeeeccccceEE-----eeecCCCCceEEEEeecCCcc--eEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecC
Q 019059           59 EGLFSHPNEIWD-----LSSCPFDQRIFSTVFSTGESY--GAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSS  131 (346)
Q Consensus        59 ~~~~~h~~~v~~-----~~~~~~~~~l~~~~~~~~~d~--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  131 (346)
                      ..+..|......     .+|+|+++.|+.+.   ..++  .|.+||+.         .++.......+...+..+.|+|+
T Consensus        24 ~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~---~~~g~~~l~~~d~~---------~g~~~~lt~~~~~~~~~~~~spd   91 (388)
T 3pe7_A           24 TRLTPPDVTCHRNYFYQKCFTRDGSKLLFGG---AFDGPWNYYLLDLN---------TQVATQLTEGRGDNTFGGFLSPD   91 (388)
T ss_dssp             EECSCTTSCEECCCTTSCCBCTTSCEEEEEE---CTTSSCEEEEEETT---------TCEEEECCCSSCBCSSSCEECTT
T ss_pred             EEecCCcccccchhhcCccCCCCCCEEEEEE---cCCCCceEEEEeCC---------CCceEEeeeCCCCCccceEEcCC
Confidence            445556655555     89999999998874   3355  47777876         45555555555555667889999


Q ss_pred             CCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEE--EEeCCCCCcEEEEe----------------------
Q 019059          132 GRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSG--GAWDPHDVNAVAAT----------------------  187 (346)
Q Consensus       132 ~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~l~~~~----------------------  187 (346)
                      ++. ++.++.++.|++||+.+++.......     +...+..  ..++|++..++...                      
T Consensus        92 g~~-l~~~~~~~~l~~~d~~~g~~~~~~~~-----~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (388)
T 3pe7_A           92 DDA-LFYVKDGRNLMRVDLATLEENVVYQV-----PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTK  165 (388)
T ss_dssp             SSE-EEEEETTTEEEEEETTTCCEEEEEEC-----CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGC
T ss_pred             CCE-EEEEeCCCeEEEEECCCCcceeeeec-----hhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccC
Confidence            996 55555678999999997653322211     1112322  34589888876432                      


Q ss_pred             cCCeEEEEEccCCCccceeeccc-eeEEEeCC-CCCcEEEEecC------CCeEEEEEcccCCcceeeecCCC--cceEE
Q 019059          188 CESSVQFWDLRSMGKTNSIEHAH-VRNVDYDT-KKKHLLVTAAD------ESGIHLWDLRMLKAPIQELPGHT--HWTWA  257 (346)
Q Consensus       188 ~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~-~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~--~~v~~  257 (346)
                      .+..|++||+.+++......... +..++|+| ++. .++....      ...|.++|+.. . ....+..+.  ..+..
T Consensus       166 ~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~-~l~~~~~~~~~~~~~~l~~~d~~~-~-~~~~l~~~~~~~~~~~  242 (388)
T 3pe7_A          166 PCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDS-TVAFCHEGPHDLVDARMWLINEDG-T-NMRKVKTHAEGESCTH  242 (388)
T ss_dssp             CCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEE-EEEEEECSCTTTSSCSEEEEETTS-C-CCEESCCCCTTEEEEE
T ss_pred             CcceEEEEECCCCceEEeecCCccccccEECCCCCC-EEEEEEecCCCCCcceEEEEeCCC-C-ceEEeeeCCCCccccc
Confidence            34689999999887554443333 89999999 997 5554443      23677777764 2 344454444  35788


Q ss_pred             EEeCCCCCcEEEEec-CCC----eEEEEecCCCCCCCCCcccccCCccccccc--cccccccccce---eeEEEeCCCCC
Q 019059          258 VCCNPEYDGFILSAG-TDS----TVNLWLVSTSNHDELPSESLVESPNQRANS--LLNSYSDYEDS---VYGLAWSSREP  327 (346)
Q Consensus       258 v~~~~~~~~~l~s~~-~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---v~~~~~~~~~~  327 (346)
                      +.|+|+| +.|+..+ .++    .|++||+.+                   ++  .+..+.++...   ...+.|+|+|+
T Consensus       243 ~~~spdg-~~l~~~~~~~~~~~~~l~~~d~~~-------------------g~~~~l~~~~~~~~~~~~~~~~~~spdg~  302 (388)
T 3pe7_A          243 EFWVPDG-SALVYVSYLKGSPDRFIYSADPET-------------------LENRQLTSMPACSHLMSNYDGSLMVGDGS  302 (388)
T ss_dssp             EEECTTS-SCEEEEEEETTCCCEEEEEECTTT-------------------CCEEEEEEECCEEEEEECTTSSEEEEEEC
T ss_pred             ceECCCC-CEEEEEecCCCCCcceEEEEecCC-------------------CceEEEEcCCCceeeeecCCCCeEccCCC
Confidence            9999999 6554433 222    399999987                   33  22223331111   22347999998


Q ss_pred             cEEEEe--------ecCCeEEEeeecC
Q 019059          328 WIFASL--------SYDGRVRNHMLEK  346 (346)
Q Consensus       328 ~~l~s~--------~~d~~v~vw~~~~  346 (346)
                      .++++.        ..+..|++|++++
T Consensus       303 ~l~~~~~~~~~~~~~~~~~i~~~d~~~  329 (388)
T 3pe7_A          303 DAPVDVQDDSGYKIENDPFLYVFNMKN  329 (388)
T ss_dssp             CC------------CCCCEEEEEETTT
T ss_pred             cceeEeeeccccccCCCCEEEEEeccC
Confidence            554433        4567899999763

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.78  E-value=1.8e-16  Score=131.24  Aligned_cols=233  Identities=8%  Similarity=-0.092  Sum_probs=157.7

Q ss_pred             ccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecC
Q 019059           63 SHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDE  142 (346)
Q Consensus        63 ~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d  142 (346)
                      .+.....+++|+|+++.++.+   +..++.|..|+..         ..  ...+..+...+.+++++++|+ ++++...+
T Consensus        25 ~~~~~~eg~~~d~~g~~l~~~---~~~~~~i~~~~~~---------~~--~~~~~~~~~~~~~l~~~~dg~-l~v~~~~~   89 (296)
T 3e5z_A           25 DGFTWTEGPVYVPARSAVIFS---DVRQNRTWAWSDD---------GQ--LSPEMHPSHHQNGHCLNKQGH-LIACSHGL   89 (296)
T ss_dssp             CCCSSEEEEEEEGGGTEEEEE---EGGGTEEEEEETT---------SC--EEEEESSCSSEEEEEECTTCC-EEEEETTT
T ss_pred             cCCccccCCeEeCCCCEEEEE---eCCCCEEEEEECC---------CC--eEEEECCCCCcceeeECCCCc-EEEEecCC
Confidence            455667899999999855554   3567899999987         32  455656777899999999998 34444456


Q ss_pred             CeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEe-----------------cCCeEEEEEccCCCccce
Q 019059          143 ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT-----------------CESSVQFWDLRSMGKTNS  205 (346)
Q Consensus       143 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----------------~d~~i~i~d~~~~~~~~~  205 (346)
                      +.|.+||..+++.. .+...........+..++++|+|+.+++..                 ..+.|..+|.. ++ ...
T Consensus        90 ~~i~~~d~~~g~~~-~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~  166 (296)
T 3e5z_A           90 RRLERQREPGGEWE-SIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSA  166 (296)
T ss_dssp             TEEEEECSTTCCEE-EEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEE
T ss_pred             CeEEEEcCCCCcEE-EEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEE
Confidence            89999998765422 221111111122567899999998777632                 13456666655 33 233


Q ss_pred             eeccc--eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcc---eeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEE
Q 019059          206 IEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAP---IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLW  280 (346)
Q Consensus       206 ~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iw  280 (346)
                      +....  +..++|+|+++ .+++...++.|.+||+...+..   ...+..+...+..++++++| +++++.  ++.|.+|
T Consensus       167 ~~~~~~~~~gi~~s~dg~-~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G-~l~v~~--~~~v~~~  242 (296)
T 3e5z_A          167 PIRDRVKPNGLAFLPSGN-LLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGG-LIWASA--GDGVHVL  242 (296)
T ss_dssp             EECCCSSEEEEEECTTSC-EEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTS-CEEEEE--TTEEEEE
T ss_pred             eecCCCCCccEEECCCCC-EEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCC-CEEEEc--CCeEEEE
Confidence            32222  89999999998 5577888899999998732322   22333345567889999999 766655  7889999


Q ss_pred             ecCCCCCCCCCcccccCCccccccccccccccccceeeEEEe-CCCCCcEEEEeecCCeE
Q 019059          281 LVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAW-SSREPWIFASLSYDGRV  339 (346)
Q Consensus       281 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~l~s~~~d~~v  339 (346)
                      |...                    +.+..+..+.. +.+++| .|+++ .|..++.++..
T Consensus       243 ~~~g--------------------~~~~~~~~~~~-~~~~~f~~~d~~-~L~v~t~~~l~  280 (296)
T 3e5z_A          243 TPDG--------------------DELGRVLTPQT-TSNLCFGGPEGR-TLYMTVSTEFW  280 (296)
T ss_dssp             CTTS--------------------CEEEEEECSSC-CCEEEEESTTSC-EEEEEETTEEE
T ss_pred             CCCC--------------------CEEEEEECCCC-ceeEEEECCCCC-EEEEEcCCeEE
Confidence            9863                    56666666666 899999 58887 56666666533

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.78  E-value=1.2e-16  Score=148.92  Aligned_cols=240  Identities=13%  Similarity=0.121  Sum_probs=151.3

Q ss_pred             eccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccc-----eEEeeecCCCCceEEEEeec-----CCc
Q 019059           21 DVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNE-----IWDLSSCPFDQRIFSTVFST-----GES   90 (346)
Q Consensus        21 ~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~-----v~~~~~~~~~~~l~~~~~~~-----~~d   90 (346)
                      .+.+.+++..++.+      ++.|.+|++...+..   ..+.+|...     ..+++||||++.|+.+....     +..
T Consensus        21 ~~~w~~dg~~~~~~------~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~   91 (740)
T 4a5s_A           21 SLRWISDHEYLYKQ------ENNILVFNAEYGNSS---VFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYT   91 (740)
T ss_dssp             CEEECSSSEEEEEE------TTEEEEEETTTCCEE---EEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEE
T ss_pred             ccEECCCCcEEEEc------CCcEEEEECCCCceE---EEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccc
Confidence            34455576544443      678999998775432   234445432     24478899999988864110     112


Q ss_pred             ceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccC-----
Q 019059           91 YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSS-----  165 (346)
Q Consensus        91 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-----  165 (346)
                      +.+.+||+.         .++. ..+..|...+..++|||||+.++++  .++.|++|++.++... .+......     
T Consensus        92 ~~~~~~d~~---------~~~~-~~l~~~~~~~~~~~~SPdG~~la~~--~~~~i~~~~~~~~~~~-~lt~~g~~~~~~~  158 (740)
T 4a5s_A           92 ASYDIYDLN---------KRQL-ITEERIPNNTQWVTWSPVGHKLAYV--WNNDIYVKIEPNLPSY-RITWTGKEDIIYN  158 (740)
T ss_dssp             EEEEEEETT---------TTEE-CCSSCCCTTEEEEEECSSTTCEEEE--ETTEEEEESSTTSCCE-ECCSCCBTTTEEE
T ss_pred             eEEEEEECC---------CCcE-EEcccCCCcceeeEECCCCCEEEEE--ECCeEEEEECCCCceE-EEcCCCCccceec
Confidence            567899998         4443 3466777889999999999963333  5799999999876532 22111100     


Q ss_pred             CCc---------eeeEEEEeCCCCCcEEEEecC-C-----------------------------------eEEEEEccC-
Q 019059          166 GML---------HYLSGGAWDPHDVNAVAATCE-S-----------------------------------SVQFWDLRS-  199 (346)
Q Consensus       166 ~~~---------~~v~~~~~~~~~~~l~~~~~d-~-----------------------------------~i~i~d~~~-  199 (346)
                      ++.         .....+.|+|||+.|+.+..| +                                   .|++||+.+ 
T Consensus       159 g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~  238 (740)
T 4a5s_A          159 GITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSL  238 (740)
T ss_dssp             SBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSC
T ss_pred             CcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCC
Confidence            111         122358999999999887532 1                                   588899998 


Q ss_pred             --CC--ccceeec-----cc---eeEEEeCCCCCcEEEEec----CCCeEEEEEcccCC-----cceeee--cCCCcceE
Q 019059          200 --MG--KTNSIEH-----AH---VRNVDYDTKKKHLLVTAA----DESGIHLWDLRMLK-----APIQEL--PGHTHWTW  256 (346)
Q Consensus       200 --~~--~~~~~~~-----~~---v~~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~-----~~~~~~--~~~~~~v~  256 (346)
                        ++  ....+..     ++   +..++|+|+++ +++...    .+..|.+||+.+..     ..+..+  ..|...+.
T Consensus       239 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~-~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~  317 (740)
T 4a5s_A          239 SSVTNATSIQITAPASMLIGDHYLCDVTWATQER-ISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVG  317 (740)
T ss_dssp             CSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTE-EEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSS
T ss_pred             CCCCcceEEEecCCccCCCCCeEEEEEEEeCCCe-EEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEc
Confidence              73  2223321     13   89999999998 555432    23479999998733     012222  44665554


Q ss_pred             -----EEEeCCCCCcEEE-Eec-CCC--eEEEEecCC
Q 019059          257 -----AVCCNPEYDGFIL-SAG-TDS--TVNLWLVST  284 (346)
Q Consensus       257 -----~v~~~~~~~~~l~-s~~-~d~--~i~iwd~~~  284 (346)
                           .+.|+||| +.|+ ..+ .+|  .|++||...
T Consensus       318 ~~~~~~p~fspDG-~~l~~~~s~~~G~~~l~~~~~~~  353 (740)
T 4a5s_A          318 RFRPSEPHFTLDG-NSFYKIISNEEGYRHICYFQIDK  353 (740)
T ss_dssp             SSSCCCCEECTTS-SEEEEEEECTTSCEEEEEEETTC
T ss_pred             cCcCCCceEcCCC-CEEEEEEEcCCCceEEEEEECCC
Confidence                 78899999 6655 554 344  688888876

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.77  E-value=2e-15  Score=127.18  Aligned_cols=238  Identities=11%  Similarity=0.001  Sum_probs=155.3

Q ss_pred             eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEE
Q 019059           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV  138 (346)
Q Consensus        59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  138 (346)
                      ..+..+...+.+++|+|+++.+++    +..++.|.+||.+         ..+.......+...+.+++++++++ ++++
T Consensus        38 ~~~~~~~~~~~~~~~~~~g~l~~~----~~~~~~i~~~d~~---------~~~~~~~~~~~~~~~~~i~~~~dg~-l~v~  103 (333)
T 2dg1_A           38 LEISKKGLQLEGLNFDRQGQLFLL----DVFEGNIFKINPE---------TKEIKRPFVSHKANPAAIKIHKDGR-LFVC  103 (333)
T ss_dssp             EEEESSCCCEEEEEECTTSCEEEE----ETTTCEEEEECTT---------TCCEEEEEECSSSSEEEEEECTTSC-EEEE
T ss_pred             EEEeccCccccCcEECCCCCEEEE----ECCCCEEEEEeCC---------CCcEEEEeeCCCCCcceEEECCCCc-EEEE
Confidence            344456667899999998874444    3567899999986         3333333334567899999999997 4555


Q ss_pred             EecC----CeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec------CCeEEEEEccCCCccceeec
Q 019059          139 SIDE----ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC------ESSVQFWDLRSMGKTNSIEH  208 (346)
Q Consensus       139 ~~~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~  208 (346)
                      +..+    +.|.+||.+++... ......  .....+..++++|++..+++...      .+.|..+|..+++.......
T Consensus       104 ~~~~~~~~~~i~~~d~~~~~~~-~~~~~~--~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  180 (333)
T 2dg1_A          104 YLGDFKSTGGIFAATENGDNLQ-DIIEDL--STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN  180 (333)
T ss_dssp             ECTTSSSCCEEEEECTTSCSCE-EEECSS--SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE
T ss_pred             eCCCCCCCceEEEEeCCCCEEE-EEEccC--ccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC
Confidence            4444    68999998765432 121111  12346889999999876665543      35676777665443322221


Q ss_pred             cc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceee--------ecCCCcceEEEEeCCCCCcEEEEecCCCeEEE
Q 019059          209 AH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQE--------LPGHTHWTWAVCCNPEYDGFILSAGTDSTVNL  279 (346)
Q Consensus       209 ~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--------~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~i  279 (346)
                      .. +..++|+|++..++++...++.|.+||++.....+..        +.++ ..+..++++++| .++++...++.|.+
T Consensus       181 ~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G-~l~v~~~~~~~v~~  258 (333)
T 2dg1_A          181 ISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDD-NLYVAMYGQGRVLV  258 (333)
T ss_dssp             ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTC-CEEEEEETTTEEEE
T ss_pred             CCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCC-CEEEEEcCCCEEEE
Confidence            12 8899999999745566667789999998642222221        1222 467889999999 77777777889999


Q ss_pred             EecCCCCCCCCCcccccCCcccccccccccccccc------ceeeEEEeCCCCCcEEEEeec
Q 019059          280 WLVSTSNHDELPSESLVESPNQRANSLLNSYSDYE------DSVYGLAWSSREPWIFASLSY  335 (346)
Q Consensus       280 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~~l~s~~~  335 (346)
                      ||...                    +.+..+..+.      ..+.+++|+|+++.++++...
T Consensus       259 ~d~~g--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          259 FNKRG--------------------YPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             ECTTS--------------------CEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             ECCCC--------------------CEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence            99853                    3333333222      258999999998645444443

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.77  E-value=1.5e-16  Score=135.44  Aligned_cols=274  Identities=8%  Similarity=-0.006  Sum_probs=173.0

Q ss_pred             CcceEEEeeccc--CCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEe------ecCCcceEEEEec
Q 019059           27 DHTSFLTGTLSL--KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVF------STGESYGAAIWQI   98 (346)
Q Consensus        27 ~~~~~~~g~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~------~~~~d~~i~vw~~   98 (346)
                      +..++.+.....  ..++.+++|+....  .+. ..+..+..+  .++|+|++++++++..      .|..++.|.+||.
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~--~~~-~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~   88 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNG--KFL-GMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDA   88 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTC--CEE-EEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEET
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCC--eEE-EEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEEC
Confidence            445555543221  23678999975443  222 334444444  8999999999988742      1224678999998


Q ss_pred             CcccCCCCCccceeeeeeecc------CCceEEEEeecCCCCcEEEEec-CCeEEEEEcCCCCCCceeeecccCCCceee
Q 019059           99 PELYGQLNSPQLERIAALDAH------VGKINCVLWWSSGRHDKLVSID-EENIFLWSLDCSNKNAQVQSKQSSGMLHYL  171 (346)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v  171 (346)
                      .         +.+.+.++...      ......++++|+|++++++... ++.|.+||+.+.+....+..  ..    ..
T Consensus        89 ~---------t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~--~~----~~  153 (361)
T 2oiz_A           89 D---------KLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTA--AA----GC  153 (361)
T ss_dssp             T---------TCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGG--GT----TE
T ss_pred             c---------CCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEec--CC----Cc
Confidence            7         56666666432      2356789999999974444443 68999999987643222011  11    22


Q ss_pred             EEEEeCCCC-CcEEEEecCCeEEEEEccC-CCccc------eeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCC
Q 019059          172 SGGAWDPHD-VNAVAATCESSVQFWDLRS-MGKTN------SIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK  242 (346)
Q Consensus       172 ~~~~~~~~~-~~l~~~~~d~~i~i~d~~~-~~~~~------~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  242 (346)
                      ..+.+.|++ ..+++.+.||.+.+|++.. ++...      .+..+. ...+.+++++. .++..+.++.|.++|+....
T Consensus       154 ~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~v~v~d~~~~~  232 (361)
T 2oiz_A          154 WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKD-KAHFVSYYGNVYSADFSGDE  232 (361)
T ss_dssp             EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSS-EEEEEBTTSEEEEEECSSSS
T ss_pred             ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCC-EEEEEeCCCeEEEEEecCCC
Confidence            335567766 4567777899999999875 44331      111111 23344456676 45555678899999986422


Q ss_pred             cc-eeeecCC----------CcceEEEEeCCCCCcEEEEecC-----------CCeEEEEecCCCCCCCCCcccccCCcc
Q 019059          243 AP-IQELPGH----------THWTWAVCCNPEYDGFILSAGT-----------DSTVNLWLVSTSNHDELPSESLVESPN  300 (346)
Q Consensus       243 ~~-~~~~~~~----------~~~v~~v~~~~~~~~~l~s~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~~  300 (346)
                      .. ...+...          ......++|+|++ ..++++..           .+.|.+||+.+                
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg-~~lyv~~~~~~~~~~~~~~~~~v~viD~~t----------------  295 (361)
T 2oiz_A          233 VKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRAS-GRMYVFMHPDGKEGTHKFPAAEIWVMDTKT----------------  295 (361)
T ss_dssp             CEEEEEEESCCHHHHHTTCEECCSSCEEEETTT-TEEEEEEESSCCTTCTTCCCSEEEEEETTT----------------
T ss_pred             ceecccccccCccccccccccCCeeEEEEecCC-CeEEEEEccCCCcccccCCCceEEEEECCC----------------
Confidence            11 1111100          0112237899998 55554432           34899999998                


Q ss_pred             ccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          301 QRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       301 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                         .+.+..+..+.  +.+++|+|+|+ +|++++. +.|.+||++
T Consensus       296 ---~~~v~~i~~~~--p~~ia~spdg~-~l~v~n~-~~v~v~D~~  333 (361)
T 2oiz_A          296 ---KQRVARIPGRD--ALSMTIDQQRN-LMLTLDG-GNVNVYDIS  333 (361)
T ss_dssp             ---TEEEEEEECTT--CCEEEEETTTT-EEEEECS-SCEEEEECS
T ss_pred             ---CcEEEEEecCC--eeEEEECCCCC-EEEEeCC-CeEEEEECC
Confidence               78888888776  89999999998 6666665 999999975

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.77  E-value=3.8e-16  Score=144.51  Aligned_cols=284  Identities=8%  Similarity=-0.027  Sum_probs=176.4

Q ss_pred             CCcceEEEeecccCC-CCeEEEEEecCCCCeEEEe---eeeccccceEEeeecCCCCceEEEEee-cCCcceEEEEecCc
Q 019059           26 TDHTSFLTGTLSLKE-ENEVHLLRLSSGGTELICE---GLFSHPNEIWDLSSCPFDQRIFSTVFS-TGESYGAAIWQIPE  100 (346)
Q Consensus        26 ~~~~~~~~g~~~~~~-~~~i~~~~~~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~~l~~~~~~-~~~d~~i~vw~~~~  100 (346)
                      +++.+++......+. ...++..+...........   ...+|...+..++|||||+.|+.+... |+.+..|++||+. 
T Consensus        77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~-  155 (695)
T 2bkl_A           77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD-  155 (695)
T ss_dssp             EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT-
T ss_pred             EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC-
Confidence            466777765543332 2334444433322222211   012455679999999999999877643 3346789999998 


Q ss_pred             ccCCCCCccceee-e-eeeccCCceEEEEeecCCCCcEEEEecCCe-------------EEEEEcCCCCCCceeeecccC
Q 019059          101 LYGQLNSPQLERI-A-ALDAHVGKINCVLWWSSGRHDKLVSIDEEN-------------IFLWSLDCSNKNAQVQSKQSS  165 (346)
Q Consensus       101 ~~~~~~~~~~~~~-~-~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~-------------i~vwd~~~~~~~~~~~~~~~~  165 (346)
                              .++.+ . .+..  .....++|+|||+. ++.++.+..             |++|++.++.....+.. ...
T Consensus       156 --------tg~~~~~~~~~~--~~~~~~~wspDg~~-l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~-~~~  223 (695)
T 2bkl_A          156 --------SGEWSKVDVIEG--GKYATPKWTPDSKG-FYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVH-ERT  223 (695)
T ss_dssp             --------TCCBCSSCCBSC--CTTCCCEECTTSSE-EEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEE-CCC
T ss_pred             --------CCCCcCCcccCc--ccccceEEecCCCE-EEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEE-ecC
Confidence                    33332 1 1111  11267899999996 444444444             99999987653222222 222


Q ss_pred             CCceeeEEEEeCCCCCcEEEEecCC----eEEEEEccCCCccceeeccc--eeEEEeCCCCCcEEEEec---CCCeEEEE
Q 019059          166 GMLHYLSGGAWDPHDVNAVAATCES----SVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAA---DESGIHLW  236 (346)
Q Consensus       166 ~~~~~v~~~~~~~~~~~l~~~~~d~----~i~i~d~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~---~dg~i~i~  236 (346)
                      .+...+..+.|+|+|+.|+.++.++    .|+++|..+++. ..+....  +....+ +++. +++.+.   .++.|.+|
T Consensus       224 ~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~  300 (695)
T 2bkl_A          224 GDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEV  300 (695)
T ss_dssp             CCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEE
T ss_pred             CCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEE
Confidence            3344678999999999998887655    677776655543 3333222  555556 6776 666655   35789999


Q ss_pred             EcccCCc-ceeeecCC--CcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccc
Q 019059          237 DLRMLKA-PIQELPGH--THWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDY  313 (346)
Q Consensus       237 d~~~~~~-~~~~~~~~--~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (346)
                      |+..... ....+..+  ...+..++|+ ++ .++++...|+..+||.+..                  .+.....+..+
T Consensus       301 d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~~------------------~g~~~~~l~~~  360 (695)
T 2bkl_A          301 DPAKPARASWKEIVPEDSSASLLSVSIV-GG-HLSLEYLKDATSEVRVATL------------------KGKPVRTVQLP  360 (695)
T ss_dssp             BTTBCSGGGCEEEECCCSSCEEEEEEEE-TT-EEEEEEEETTEEEEEEEET------------------TCCEEEECCCS
T ss_pred             eCCCCCccCCeEEecCCCCCeEEEEEEE-CC-EEEEEEEECCEEEEEEEeC------------------CCCeeEEecCC
Confidence            9876331 12334333  4567888888 55 8889999999988887653                  13334444444


Q ss_pred             -cceeeEEEeCCCCCcEEEEee---cCCeEEEeeec
Q 019059          314 -EDSVYGLAWSSREPWIFASLS---YDGRVRNHMLE  345 (346)
Q Consensus       314 -~~~v~~~~~~~~~~~~l~s~~---~d~~v~vw~~~  345 (346)
                       ...+..++++|+++.++++.+   ..++|++||++
T Consensus       361 ~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~  396 (695)
T 2bkl_A          361 GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVS  396 (695)
T ss_dssp             SSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETT
T ss_pred             CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECC
Confidence             566888999999874544443   34679999874

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.77  E-value=3.6e-16  Score=132.45  Aligned_cols=258  Identities=10%  Similarity=0.080  Sum_probs=157.3

Q ss_pred             CcceEEEeeccc-----CCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecC-CcceEEEEecCc
Q 019059           27 DHTSFLTGTLSL-----KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTG-ESYGAAIWQIPE  100 (346)
Q Consensus        27 ~~~~~~~g~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~-~d~~i~vw~~~~  100 (346)
                      ++.+++......     .....++++++.....    ..+    ..+..++|+|+|+.|+.+...++ ....|.+|++. 
T Consensus        23 dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~----~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~-   93 (347)
T 2gop_A           23 KGELVAYVLTKANLKDNKYENTIVIENLKNNAR----RFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLE-   93 (347)
T ss_dssp             ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCE----EEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETT-
T ss_pred             CCcEEEEEEeecCcccCCccceEEEEeCCCCce----EEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECC-
Confidence            566666543221     1235677776665321    222    56888999999999988742221 22347777776 


Q ss_pred             ccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEec--------------------------CCeEEEEEcCCCC
Q 019059          101 LYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSID--------------------------EENIFLWSLDCSN  154 (346)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--------------------------d~~i~vwd~~~~~  154 (346)
                              .++..... .+.. +..+.|+|+|+.+++++..                          ...|.+||+.+++
T Consensus        94 --------~g~~~~l~-~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~  163 (347)
T 2gop_A           94 --------TLSSKKIL-EAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE  163 (347)
T ss_dssp             --------TTEEEEEE-EESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE
T ss_pred             --------CCceEEEE-cCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe
Confidence                    33433333 3333 9999999999975555432                          2578899987654


Q ss_pred             CCceeeecccCCCceeeEEEEeCCCCCcEEEEecC------C-eEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEE
Q 019059          155 KNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE------S-SVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVT  226 (346)
Q Consensus       155 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~-~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~  226 (346)
                      ....+..      . .+..+.|+|++ .++++..+      . ...+|.+.+++. ..+.... +..+  +|+|+.+++.
T Consensus       164 ~~~~l~~------~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~~~~~~~--spdg~~l~~~  232 (347)
T 2gop_A          164 VIEEFEK------P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEKVSFYAV--DSDGERILLY  232 (347)
T ss_dssp             EEEEEEE------E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEEESEEEE--EECSSCEEEE
T ss_pred             EEeeecC------C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EEeccCcceeeE--CCCCCEEEEE
Confidence            2122221      1 56788999999 66666543      2 334444444433 3332112 4444  8999844444


Q ss_pred             ecC-------CCeEEEEEcccCCcceeeecCCCcceEE-EEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCC
Q 019059          227 AAD-------ESGIHLWDLRMLKAPIQELPGHTHWTWA-VCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVES  298 (346)
Q Consensus       227 ~~~-------dg~i~i~d~~~~~~~~~~~~~~~~~v~~-v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~  298 (346)
                      +..       ...|.+||  . +........+...+.. +.|+ ++  ++++++.++.++|| +..              
T Consensus       233 ~~~~~~~~~~~~~l~~~d--~-~~~~~l~~~~~~~~~~~~~~s-dg--~~~~~~~~~~~~l~-~~~--------------  291 (347)
T 2gop_A          233 GKPEKKYMSEHNKLYIYD--G-KEVMGILDEVDRGVGQAKIKD-GK--VYFTLFEEGSVNLY-IWD--------------  291 (347)
T ss_dssp             ECCSSSCCCSSCEEEEEC--S-SCEEESSTTCCSEEEEEEEET-TE--EEEEEEETTEEEEE-EES--------------
T ss_pred             EccccCCccccceEEEEC--C-CceEeccccCCcccCCccEEc-Cc--EEEEEecCCcEEEE-EcC--------------
Confidence            333       24688888  3 4344444456677886 8999 65  78888999999999 875              


Q ss_pred             ccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeE-EEeee
Q 019059          299 PNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRV-RNHML  344 (346)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v-~vw~~  344 (346)
                           ++... +..+...|.+++|+|  . ++++++.++.. ++|.+
T Consensus       292 -----g~~~~-~~~~~~~v~~~~~s~--~-~~~~~~~~~~~~~l~~~  329 (347)
T 2gop_A          292 -----GEIKP-IAKGRHWIMGFDVDE--I-VVYLKETATRLRELFTW  329 (347)
T ss_dssp             -----SSEEE-EECSSSEEEEEEESS--S-EEEEEECSSSCCEEEEE
T ss_pred             -----CceEE-EecCCCeEEeeeeeC--c-EEEEEcCCCChHHheEe
Confidence                 34322 233466799999999  4 67777766664 77765

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.75  E-value=1.4e-15  Score=124.15  Aligned_cols=237  Identities=11%  Similarity=-0.002  Sum_probs=160.7

Q ss_pred             ceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEE
Q 019059           67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIF  146 (346)
Q Consensus        67 ~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~  146 (346)
                      ...+++++|++..++++   ...++.|.+|+..         ..........+...+.++++++++. ++++.. ++.|.
T Consensus        25 ~p~~i~~~~~g~l~v~~---~~~~~~i~~~~~~---------~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~-~~~i~   90 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTS---EGMYGRVVKLATG---------STGTTVLPFNGLYQPQGLAVDGAGT-VYVTDF-NNRVV   90 (270)
T ss_dssp             CEEEEEECTTCCEEEEE---CSSSCEEEEECC--------------EECCCCSCCSCCCEEECTTCC-EEEEET-TTEEE
T ss_pred             CccceEECCCCCEEEEc---cCCCCcEEEecCC---------CcccceEeeCCcCCcceeEECCCCC-EEEEcC-CCEEE
Confidence            67889999988744413   3567889999865         2221111122335678899999988 454445 88999


Q ss_pred             EEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeecc-c-eeEEEeCCCCCcEE
Q 019059          147 LWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA-H-VRNVDYDTKKKHLL  224 (346)
Q Consensus       147 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~-v~~~~~~~~~~~~l  224 (346)
                      +||...... .....    .....+.++++++++..+++...++.|.+||..+.......... . +.++++++++. ++
T Consensus        91 ~~d~~~~~~-~~~~~----~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~  164 (270)
T 1rwi_B           91 TLAAGSNNQ-TVLPF----DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-VY  164 (270)
T ss_dssp             EECTTCSCC-EECCC----CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCC-EE
T ss_pred             EEeCCCceE-eeeec----CCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCC-EE
Confidence            999875432 11111    11236789999999886666566889999976654433222212 2 88999999997 78


Q ss_pred             EEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccc
Q 019059          225 VTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRAN  304 (346)
Q Consensus       225 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  304 (346)
                      ++...++.|.+||..... .......+...+..++++++| .++++...++.|.+||...                   .
T Consensus       165 v~~~~~~~i~~~~~~~~~-~~~~~~~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~-------------------~  223 (270)
T 1rwi_B          165 VTDTDNNRVVKLEAESNN-QVVLPFTDITAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGS-------------------T  223 (270)
T ss_dssp             EEEGGGTEEEEECTTTCC-EEECCCSSCCSEEEEEECTTC-CEEEEETTTSCEEEECTTC-------------------S
T ss_pred             EEECCCCEEEEEecCCCc-eEeecccCCCCceEEEECCCC-CEEEEECCCCcEEEEcCCC-------------------C
Confidence            777778899999987522 222222333678899999999 8888887888999999875                   2


Q ss_pred             ccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          305 SLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       305 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      ........+...+.+++++|+|. ++++...+++|+++++.
T Consensus       224 ~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~v~~~~~~  263 (270)
T 1rwi_B          224 TSTVLPFTGLNTPLAVAVDSDRT-VYVADRGNDRVVKLTSL  263 (270)
T ss_dssp             CCEECCCCSCSCEEEEEECTTCC-EEEEEGGGTEEEEECCC
T ss_pred             cceeeccCCCCCceeEEECCCCC-EEEEECCCCEEEEEcCC
Confidence            22211222334589999999996 88899999999999874

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.74  E-value=2.1e-15  Score=126.62  Aligned_cols=239  Identities=9%  Similarity=0.009  Sum_probs=164.3

Q ss_pred             cceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeE
Q 019059           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENI  145 (346)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i  145 (346)
                      ....++.+.  +..+.++.   ..++.|.+||..         +.+.+.++. .......++++++++ ++++...++.|
T Consensus        44 ~~~~~i~~~--~~~lyv~~---~~~~~v~viD~~---------t~~~~~~i~-~~~~p~~i~~~~~g~-lyv~~~~~~~v  107 (328)
T 3dsm_A           44 DVAQSMVIR--DGIGWIVV---NNSHVIFAIDIN---------TFKEVGRIT-GFTSPRYIHFLSDEK-AYVTQIWDYRI  107 (328)
T ss_dssp             SCEEEEEEE--TTEEEEEE---GGGTEEEEEETT---------TCCEEEEEE-CCSSEEEEEEEETTE-EEEEEBSCSEE
T ss_pred             ccceEEEEE--CCEEEEEE---cCCCEEEEEECc---------ccEEEEEcC-CCCCCcEEEEeCCCe-EEEEECCCCeE
Confidence            346677774  44555543   457899999998         677777774 345678999999984 44444478999


Q ss_pred             EEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEe--cCCeEEEEEccCCCccceeeccc-eeEEEeCCCCCc
Q 019059          146 FLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT--CESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKH  222 (346)
Q Consensus       146 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~  222 (346)
                      .+||..+.+....+......+.......+++  ++..++++.  .++.|.++|+.+++....+..+. ...++++|+++ 
T Consensus       108 ~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~-  184 (328)
T 3dsm_A          108 FIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNK-  184 (328)
T ss_dssp             EEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSE-
T ss_pred             EEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCC-
Confidence            9999987653333322221111224456666  455566665  38899999999998877776555 88999999997 


Q ss_pred             EEEEecCC----------CeEEEEEcccCCcceeeecCC-CcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCC
Q 019059          223 LLVTAADE----------SGIHLWDLRMLKAPIQELPGH-THWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELP  291 (346)
Q Consensus       223 ~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~-~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  291 (346)
                      +++++..+          +.|.++|..+ .+....+... ......++|+|++ ..|+++..  .|.+||..+       
T Consensus       185 l~v~~~~~~~~~~~~~~~~~v~~id~~t-~~v~~~~~~~~g~~p~~la~~~d~-~~lyv~~~--~v~~~d~~t-------  253 (328)
T 3dsm_A          185 MWTITDGGYEGSPYGYEAPSLYRIDAET-FTVEKQFKFKLGDWPSEVQLNGTR-DTLYWINN--DIWRMPVEA-------  253 (328)
T ss_dssp             EEEEBCCBCTTCSSCBCCCEEEEEETTT-TEEEEEEECCTTCCCEEEEECTTS-CEEEEESS--SEEEEETTC-------
T ss_pred             EEEEECCCccCCccccCCceEEEEECCC-CeEEEEEecCCCCCceeEEEecCC-CEEEEEcc--EEEEEECCC-------
Confidence            67666554          7899999886 4444454422 2468899999999 77776654  899999987       


Q ss_pred             cccccCCcccccccccc--ccccccceeeEEEeCCCCCcEEEEe----ecCCeEEEeeecC
Q 019059          292 SESLVESPNQRANSLLN--SYSDYEDSVYGLAWSSREPWIFASL----SYDGRVRNHMLEK  346 (346)
Q Consensus       292 ~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~----~~d~~v~vw~~~~  346 (346)
                                  ++...  .+.........++++|++..++++.    ..++.|.+|+.++
T Consensus       254 ------------~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g  302 (328)
T 3dsm_A          254 ------------DRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQG  302 (328)
T ss_dssp             ------------SSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTC
T ss_pred             ------------CceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCC
Confidence                        33321  1111234578999999655588887    6789999998753

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.74  E-value=2.3e-15  Score=128.09  Aligned_cols=268  Identities=12%  Similarity=0.020  Sum_probs=175.0

Q ss_pred             eccCCCCcceEEEeeccc------CCCCeEEEEEecCCCCeEEEeeee-c---cccceEEeeecCCCCceEEEEeecCCc
Q 019059           21 DVKADTDHTSFLTGTLSL------KEENEVHLLRLSSGGTELICEGLF-S---HPNEIWDLSSCPFDQRIFSTVFSTGES   90 (346)
Q Consensus        21 ~~~~~~~~~~~~~g~~~~------~~~~~i~~~~~~~~~~~~~~~~~~-~---h~~~v~~~~~~~~~~~l~~~~~~~~~d   90 (346)
                      .+.+++++.+++++....      ..++.|.+|+....+ .+....+. .   +......++++|++++|+++.  .+.+
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~-~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n--~~~~  130 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLT-FEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQN--ASPA  130 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC-EEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEE--ESSS
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCc-EEEEEEcCccccccCCCcceEEECCCCCEEEEEC--CCCC
Confidence            677888888888775311      124568888765422 11111111 1   224567899999999998873  1236


Q ss_pred             ceEEEEecCcccCCCCCccceeeee-eeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeee--cccCCC
Q 019059           91 YGAAIWQIPELYGQLNSPQLERIAA-LDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQS--KQSSGM  167 (346)
Q Consensus        91 ~~i~vw~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~--~~~~~~  167 (346)
                      +.|.+||+.         ..+.+.. +.. . ....+.+.|++...+++.+.||.+.+|++...........  ......
T Consensus       131 ~~v~v~d~~---------~~~~~~~~i~~-~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~  199 (361)
T 2oiz_A          131 TSIGIVDVA---------KGDYVEDVTAA-A-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVK  199 (361)
T ss_dssp             EEEEEEETT---------TTEEEEEEGGG-T-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTT
T ss_pred             CeEEEEECC---------CCcEEEEEecC-C-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCC
Confidence            799999998         5666666 532 2 2233567888765567778899999999875332221110  000000


Q ss_pred             ceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCcc--ceee--c------c---c-eeEEEeCCCCCcEEEEec-----
Q 019059          168 LHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKT--NSIE--H------A---H-VRNVDYDTKKKHLLVTAA-----  228 (346)
Q Consensus       168 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~--~------~---~-v~~~~~~~~~~~~l~~~~-----  228 (346)
                      . ....+.+.|++..++..+.++.+.++|+......  ..+.  .      +   . ...++|+|++..++++..     
T Consensus       200 ~-~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~  278 (361)
T 2oiz_A          200 D-DPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKE  278 (361)
T ss_dssp             T-SCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCT
T ss_pred             C-CceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCc
Confidence            1 1123334567777777788899999999765422  1111  0      0   0 223789999884555433     


Q ss_pred             -----CCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccc
Q 019059          229 -----DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRA  303 (346)
Q Consensus       229 -----~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  303 (346)
                           ..+.|.+||+.+ .+.+.++..+.  +.+++|+|+| ++|++++. +.|.+||..+                   
T Consensus       279 ~~~~~~~~~v~viD~~t-~~~v~~i~~~~--p~~ia~spdg-~~l~v~n~-~~v~v~D~~t-------------------  334 (361)
T 2oiz_A          279 GTHKFPAAEIWVMDTKT-KQRVARIPGRD--ALSMTIDQQR-NLMLTLDG-GNVNVYDISQ-------------------  334 (361)
T ss_dssp             TCTTCCCSEEEEEETTT-TEEEEEEECTT--CCEEEEETTT-TEEEEECS-SCEEEEECSS-------------------
T ss_pred             ccccCCCceEEEEECCC-CcEEEEEecCC--eeEEEECCCC-CEEEEeCC-CeEEEEECCC-------------------
Confidence                 134899999997 55788887766  8999999999 78888886 9999999998                   


Q ss_pred             c--ccccccccccceeeEEEeCCCCC
Q 019059          304 N--SLLNSYSDYEDSVYGLAWSSREP  327 (346)
Q Consensus       304 ~--~~~~~~~~~~~~v~~~~~~~~~~  327 (346)
                      +  +.+..+..+......++++|+|+
T Consensus       335 ~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          335 PEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             SSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             CcceeeEEeccCCCCcEEEEecCCCC
Confidence            7  78877656666678999999985

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.74  E-value=5.3e-15  Score=123.37  Aligned_cols=246  Identities=7%  Similarity=-0.025  Sum_probs=160.3

Q ss_pred             ccceEEeeecCCCCceEEE---EeecCCcceEEEEecCcccCCCCCccceeeeeee-----ccCCceEEEEeecC-CCCc
Q 019059           65 PNEIWDLSSCPFDQRIFST---VFSTGESYGAAIWQIPELYGQLNSPQLERIAALD-----AHVGKINCVLWWSS-GRHD  135 (346)
Q Consensus        65 ~~~v~~~~~~~~~~~l~~~---~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~-~~~~  135 (346)
                      -....+++|++++..++++   ...+..++.|.+|+..         ..+.. .+.     ++...+.+++++++ +.  
T Consensus        17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~---------~g~~~-~~~~~~~~~~~~~~~~i~~~~~~g~--   84 (314)
T 1pjx_A           17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLK---------TGKKT-VICKPEVNGYGGIPAGCQCDRDANQ--   84 (314)
T ss_dssp             CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTT---------TCCEE-EEECCEETTEECCEEEEEECSSSSE--
T ss_pred             CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCC---------CCcEE-EEEecccCCCCCCCceEEEecCCCc--
Confidence            3456789999888655550   0001256789999975         22222 221     24467899999999 66  


Q ss_pred             EEEEecCCeEEEEEcCCCCCCcee-eecccCCCceeeEEEEeCCCCCcEEEEecC---------------CeEEEEEccC
Q 019059          136 KLVSIDEENIFLWSLDCSNKNAQV-QSKQSSGMLHYLSGGAWDPHDVNAVAATCE---------------SSVQFWDLRS  199 (346)
Q Consensus       136 ~~~~~~d~~i~vwd~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------------~~i~i~d~~~  199 (346)
                      ++++...+.|.+||.+ ++. ..+ ...........+.+++++++++.+++...+               +.|..+|.. 
T Consensus        85 l~v~~~~~~l~~~d~~-g~~-~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-  161 (314)
T 1pjx_A           85 LFVADMRLGLLVVQTD-GTF-EEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-  161 (314)
T ss_dssp             EEEEETTTEEEEEETT-SCE-EECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-
T ss_pred             EEEEECCCCEEEEeCC-CCE-EEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-
Confidence            4444444589999987 432 222 111111122357899999998776666544               567777765 


Q ss_pred             CCccceeeccc-eeEEEeC----CCCCcEEEEecCCCeEEEEEcccCCc-----ceeeecCCC-cceEEEEeCCCCCcEE
Q 019059          200 MGKTNSIEHAH-VRNVDYD----TKKKHLLVTAADESGIHLWDLRMLKA-----PIQELPGHT-HWTWAVCCNPEYDGFI  268 (346)
Q Consensus       200 ~~~~~~~~~~~-v~~~~~~----~~~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~-~~v~~v~~~~~~~~~l  268 (346)
                      ++......... ...++++    |+++.++++...++.|.+||+.....     ....+..+. ..+..++++++| .++
T Consensus       162 g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G-~l~  240 (314)
T 1pjx_A          162 GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDN-NLL  240 (314)
T ss_dssp             SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTC-CEE
T ss_pred             CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCC-CEE
Confidence            44332222112 7889999    99864566666788999999863122     222333333 567889999999 888


Q ss_pred             EEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          269 LSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       269 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      ++...++.|.+||..+                   ++.+..+..+...+.+++|+|++..++++...++.|..|+++
T Consensus       241 v~~~~~~~i~~~d~~~-------------------g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~  298 (314)
T 1pjx_A          241 VANWGSSHIEVFGPDG-------------------GQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EEEETTTEEEEECTTC-------------------BSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             EEEcCCCEEEEEcCCC-------------------CcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence            8777788999999886                   455555555556789999999997566666667889998864

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.73  E-value=8.3e-17  Score=138.76  Aligned_cols=235  Identities=7%  Similarity=-0.044  Sum_probs=146.7

Q ss_pred             ceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCc-eEEEEeecCCCCcEEEEecCCeE
Q 019059           67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGK-INCVLWWSSGRHDKLVSIDEENI  145 (346)
Q Consensus        67 ~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~d~~i  145 (346)
                      .+.+++|+|+|+.|+.+... +.+..|.+|++.         ..+.. .+..+... ...+.|+|+|+. ++..+.++.|
T Consensus        37 ~~~~~~~SpdG~~l~~~~~~-~g~~~l~~~d~~---------~~~~~-~l~~~~~~~~~~~~~spdg~~-l~~~~~~~~l  104 (396)
T 3c5m_A           37 YFYQKCFTQDGKKLLFAGDF-DGNRNYYLLNLE---------TQQAV-QLTEGKGDNTFGGFISTDERA-FFYVKNELNL  104 (396)
T ss_dssp             CTTSCCBCTTSCEEEEEECT-TSSCEEEEEETT---------TTEEE-ECCCSSCBCTTTCEECTTSSE-EEEEETTTEE
T ss_pred             eeecCcCCCCCCEEEEEEec-CCCceEEEEECC---------CCcEE-EeecCCCCccccceECCCCCE-EEEEEcCCcE
Confidence            37788999999998876411 123467888876         33433 33333333 334789999995 4455567799


Q ss_pred             EEEEcCCCCCCceeeecccCCCceeeEE-------------------EEeCCCCCcEEEE-----ecCCeEEEEEccCCC
Q 019059          146 FLWSLDCSNKNAQVQSKQSSGMLHYLSG-------------------GAWDPHDVNAVAA-----TCESSVQFWDLRSMG  201 (346)
Q Consensus       146 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~l~~~-----~~d~~i~i~d~~~~~  201 (346)
                      ++||+.+++.. .+.... ..   ....                   +.|+|+++.++..     ..+..|++||+.+++
T Consensus       105 ~~~d~~~~~~~-~~~~~~-~~---~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~  179 (396)
T 3c5m_A          105 MKVDLETLEEQ-VIYTVD-EE---WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGE  179 (396)
T ss_dssp             EEEETTTCCEE-EEEECC-TT---EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCC
T ss_pred             EEEECCCCCcE-EEEecc-cc---cCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCc
Confidence            99999876532 222111 11   1111                   4678888877654     346789999999887


Q ss_pred             ccceeeccc-eeEEEeCC-CCCcEEEEecCC------CeEEEEEcccCCcceeeecCC--CcceEEEEeCCCCCcEEEEe
Q 019059          202 KTNSIEHAH-VRNVDYDT-KKKHLLVTAADE------SGIHLWDLRMLKAPIQELPGH--THWTWAVCCNPEYDGFILSA  271 (346)
Q Consensus       202 ~~~~~~~~~-v~~~~~~~-~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~--~~~v~~v~~~~~~~~~l~s~  271 (346)
                      ......... +..+.|+| ++. .++..+.+      ..|.+||+.. . ....+..+  ...+..+.|+|+| +.|+.+
T Consensus       180 ~~~~~~~~~~~~~~~~sp~dg~-~l~~~~~~~~~~~~~~l~~~d~~~-~-~~~~l~~~~~~~~~~~~~~spdg-~~l~~~  255 (396)
T 3c5m_A          180 LEVIHQDTAWLGHPIYRPFDDS-TVGFCHEGPHDLVDARMWLVNEDG-S-NVRKIKEHAEGESCTHEFWIPDG-SAMAYV  255 (396)
T ss_dssp             EEEEEEESSCEEEEEEETTEEE-EEEEEECSCSSSCSCCCEEEETTS-C-CCEESSCCCTTEEEEEEEECTTS-SCEEEE
T ss_pred             EEeeccCCcccccceECCCCCC-EEEEEecCCCCCCCceEEEEECCC-C-ceeEeeccCCCccccceEECCCC-CEEEEE
Confidence            654443233 89999999 676 44443333      3688888764 3 23333333  2357889999999 766655


Q ss_pred             cCC-----CeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCC-CCCcEEEEee-----------
Q 019059          272 GTD-----STVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS-REPWIFASLS-----------  334 (346)
Q Consensus       272 ~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~-----------  334 (346)
                      +.+     +.|++||+.+                   ++.... ..... .. +.|+| +++ +++..+           
T Consensus       256 ~~~~~~~~~~l~~~d~~~-------------------g~~~~l-~~~~~-~~-~~~s~~dg~-~l~~~~~~~p~~~~~~~  312 (396)
T 3c5m_A          256 SYFKGQTDRVIYKANPET-------------------LENEEV-MVMPP-CS-HLMSNFDGS-LMVGDGCDAPVDVADAD  312 (396)
T ss_dssp             EEETTTCCEEEEEECTTT-------------------CCEEEE-EECCS-EE-EEEECSSSS-EEEEEECCC--------
T ss_pred             ecCCCCccceEEEEECCC-------------------CCeEEe-eeCCC-CC-CCccCCCCc-eEEEecCCcceeecccc
Confidence            443     4599999986                   332211 11111 22 88999 997 666544           


Q ss_pred             -----cCCeEEEeeec
Q 019059          335 -----YDGRVRNHMLE  345 (346)
Q Consensus       335 -----~d~~v~vw~~~  345 (346)
                           .+..|++|+++
T Consensus       313 ~~~~~~~~~i~~~d~~  328 (396)
T 3c5m_A          313 SYNIENDPFLYVLNTK  328 (396)
T ss_dssp             --CCCCCCEEEEEETT
T ss_pred             ccccCCCCcEEEEecc
Confidence                 34789999875

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.71  E-value=3.5e-15  Score=125.61  Aligned_cols=242  Identities=9%  Similarity=0.029  Sum_probs=159.5

Q ss_pred             cceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeE
Q 019059           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENI  145 (346)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i  145 (346)
                      ..|.+++|+|++..++..    ..++.++.|.-            +....+..+...+.+++|+++++ +++++..++.|
T Consensus         6 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~g~-l~~~~~~~~~i   68 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPI----ISESELQTITA------------EPWLEISKKGLQLEGLNFDRQGQ-LFLLDVFEGNI   68 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCC----CCGGGSCEEEC------------EEEEEEESSCCCEEEEEECTTSC-EEEEETTTCEE
T ss_pred             cccceeeecCCccceeEE----eecccCccccc------------ceeEEEeccCccccCcEECCCCC-EEEEECCCCEE
Confidence            457889999988777664    46778888832            33445556666789999999988 45566678999


Q ss_pred             EEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecC----CeEEEEEccCCCccceee---ccc-eeEEEeC
Q 019059          146 FLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE----SSVQFWDLRSMGKTNSIE---HAH-VRNVDYD  217 (346)
Q Consensus       146 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~---~~~-v~~~~~~  217 (346)
                      .+||..+++.. .+..    .+...+.+++++|+++.+++...+    +.|.+||..+++....+.   ... +.+++++
T Consensus        69 ~~~d~~~~~~~-~~~~----~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d  143 (333)
T 2dg1_A           69 FKINPETKEIK-RPFV----SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFD  143 (333)
T ss_dssp             EEECTTTCCEE-EEEE----CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEEC
T ss_pred             EEEeCCCCcEE-EEee----CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEEC
Confidence            99998865422 2221    123378999999999866666555    689999998776542222   122 8999999


Q ss_pred             CCCCcEEEEecC------CCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEE-EEecCCCeEEEEecCCCCCCCC
Q 019059          218 TKKKHLLVTAAD------ESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFI-LSAGTDSTVNLWLVSTSNHDEL  290 (346)
Q Consensus       218 ~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~  290 (346)
                      |++. ++++...      .+.|..+|... . .+..+......+..++|+|++ ..| ++.+.++.|.+||+........
T Consensus       144 ~~g~-l~v~~~~~~~~~~~~~l~~~~~~~-~-~~~~~~~~~~~~~~i~~~~dg-~~l~v~~~~~~~i~~~d~~~~g~~~~  219 (333)
T 2dg1_A          144 SKGG-FYFTDFRGYSTNPLGGVYYVSPDF-R-TVTPIIQNISVANGIALSTDE-KVLWVTETTANRLHRIALEDDGVTIQ  219 (333)
T ss_dssp             TTSC-EEEEECCCBTTBCCEEEEEECTTS-C-CEEEEEEEESSEEEEEECTTS-SEEEEEEGGGTEEEEEEECTTSSSEE
T ss_pred             CCCC-EEEEeccccccCCCceEEEEeCCC-C-EEEEeecCCCcccceEECCCC-CEEEEEeCCCCeEEEEEecCCCcCcc
Confidence            9997 6666543      24566666543 2 233333333457889999999 644 5556688999999864000000


Q ss_pred             CcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          291 PSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      .          ........+.++ ..+..++++++|. ++++...++.|.+|+.+
T Consensus       220 ~----------~~~~~~~~~~~~-~~~~~i~~d~~G~-l~v~~~~~~~v~~~d~~  262 (333)
T 2dg1_A          220 P----------FGATIPYYFTGH-EGPDSCCIDSDDN-LYVAMYGQGRVLVFNKR  262 (333)
T ss_dssp             E----------EEEEEEEECCSS-SEEEEEEEBTTCC-EEEEEETTTEEEEECTT
T ss_pred             c----------ccceEEEecCCC-CCCCceEECCCCC-EEEEEcCCCEEEEECCC
Confidence            0          000001112222 3578899999997 77777778999999864

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.71  E-value=4.1e-15  Score=125.90  Aligned_cols=224  Identities=10%  Similarity=0.104  Sum_probs=145.9

Q ss_pred             cceEEeeecCCCCceEEEEeec-----CCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEe
Q 019059           66 NEIWDLSSCPFDQRIFSTVFST-----GESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI  140 (346)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~-----~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  140 (346)
                      ..+..+++  +|+.++.+....     ..++.|.+|++.         ..+. ..+    ..+..++|+|||+++++++.
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~---------~~~~-~~l----~~~~~~~~SpDg~~la~~~~   78 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLK---------NNAR-RFI----ENATMPRISPDGKKIAFMRA   78 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETT---------TCCE-EEE----ESCEEEEECTTSSEEEEEEE
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCC---------CCce-EEc----ccCCCeEECCCCCEEEEEEe
Confidence            45667777  788887754221     225678899987         3332 223    46788999999997555553


Q ss_pred             cC--C--eEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecC---------------------------
Q 019059          141 DE--E--NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE---------------------------  189 (346)
Q Consensus       141 ~d--~--~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------------------------  189 (346)
                      .+  +  .|.+|++.+++. ..+...     .. +..++|+|+++.|+.++.+                           
T Consensus        79 ~~~~~~~~l~~~~~~~g~~-~~l~~~-----~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  151 (347)
T 2gop_A           79 NEEKKVSEIWVADLETLSS-KKILEA-----KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEK  151 (347)
T ss_dssp             ETTTTEEEEEEEETTTTEE-EEEEEE-----SE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CE
T ss_pred             ccCCCcceEEEEECCCCce-EEEEcC-----CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCcc
Confidence            32  3  477778775432 222211     12 8889999999998887642                           


Q ss_pred             CeEEEEEccCCCccceeeccceeEEEeCCCCCcEEEEecCCC-------eEEEEEcccCCcceeeecCCCcceEEEEeCC
Q 019059          190 SSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADES-------GIHLWDLRMLKAPIQELPGHTHWTWAVCCNP  262 (346)
Q Consensus       190 ~~i~i~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-------~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~  262 (346)
                      ..|++||+.+++....+....+..++|+|++  +++++..++       ...+|.+.. +. ...+..+ ..+..+  +|
T Consensus       152 ~~l~~~d~~~~~~~~~l~~~~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~-~~-~~~l~~~-~~~~~~--sp  224 (347)
T 2gop_A          152 TTFWIFDTESEEVIEEFEKPRFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWED-GK-EEKMFEK-VSFYAV--DS  224 (347)
T ss_dssp             EEEEEEETTTTEEEEEEEEETTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEET-TE-EEEEEEE-ESEEEE--EE
T ss_pred             ceEEEEECCCCeEEeeecCCCcccccCCCCe--EEEEEecccccccccccccEEEeCC-Cc-eEEeccC-cceeeE--CC
Confidence            5799999988876333332147889999999  566554432       445555542 33 3444444 455544  99


Q ss_pred             CCCcEEEEecCC--------CeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeE-EEeCCCCCcEEEEe
Q 019059          263 EYDGFILSAGTD--------STVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYG-LAWSSREPWIFASL  333 (346)
Q Consensus       263 ~~~~~l~s~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~s~  333 (346)
                      +| +.|+.++.+        ..|.+||  .                   ++.......+...+.. +.|+ ++  +++++
T Consensus       225 dg-~~l~~~~~~~~~~~~~~~~l~~~d--~-------------------~~~~~l~~~~~~~~~~~~~~s-dg--~~~~~  279 (347)
T 2gop_A          225 DG-ERILLYGKPEKKYMSEHNKLYIYD--G-------------------KEVMGILDEVDRGVGQAKIKD-GK--VYFTL  279 (347)
T ss_dssp             CS-SCEEEEECCSSSCCCSSCEEEEEC--S-------------------SCEEESSTTCCSEEEEEEEET-TE--EEEEE
T ss_pred             CC-CEEEEEEccccCCccccceEEEEC--C-------------------CceEeccccCCcccCCccEEc-Cc--EEEEE
Confidence            99 777666543        4688888  4                   3444444556667886 9999 75  78889


Q ss_pred             ecCCeEEEeeec
Q 019059          334 SYDGRVRNHMLE  345 (346)
Q Consensus       334 ~~d~~v~vw~~~  345 (346)
                      +.++.++|| ++
T Consensus       280 ~~~~~~~l~-~~  290 (347)
T 2gop_A          280 FEEGSVNLY-IW  290 (347)
T ss_dssp             EETTEEEEE-EE
T ss_pred             ecCCcEEEE-Ec
Confidence            999999999 74

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.70  E-value=1.9e-14  Score=134.16  Aligned_cols=249  Identities=12%  Similarity=0.036  Sum_probs=156.9

Q ss_pred             cccceEEeeecCCCCceEEEEeecCCc-ceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecC
Q 019059           64 HPNEIWDLSSCPFDQRIFSTVFSTGES-YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDE  142 (346)
Q Consensus        64 h~~~v~~~~~~~~~~~l~~~~~~~~~d-~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d  142 (346)
                      |...+..++|||||+.|+.+...+|.+ ..|++||+.         .++.+.. ..+...+..++|+|| +.++++....
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~---------tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~  229 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVA---------DGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAE  229 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETT---------TCCEEEE-EEEEEESCCCEESTT-SEEEEEECCC
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECC---------CCCCCCc-cCCCceeccEEEECC-CEEEEEEecC
Confidence            334788999999999998876544443 579999998         4444322 122223467899999 7644444222


Q ss_pred             -------------CeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecC-----CeEEEEEccCC--Cc
Q 019059          143 -------------ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE-----SSVQFWDLRSM--GK  202 (346)
Q Consensus       143 -------------~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~--~~  202 (346)
                                   ..|++|++.++.....+.... ..+...+..+.|+|||+.|+..+.+     ..|++||+.++  ++
T Consensus       230 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~-~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~  308 (741)
T 1yr2_A          230 PKEGQAFQALNYNQTVWLHRLGTPQSADQPVFAT-PELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGP  308 (741)
T ss_dssp             C--------CCCCCEEEEEETTSCGGGCEEEECC-TTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECC
T ss_pred             cccccccccCCCCCEEEEEECCCCchhCEEEecc-CCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcc
Confidence                         248999987655322232221 2222357889999999998887754     38999999877  41


Q ss_pred             cceeeccc--eeEEEeCCCCCcEEEEecC---CCeEEEEEcccC-CcceeeecCCCcceEEEEeCCCCCcEEEEecCCCe
Q 019059          203 TNSIEHAH--VRNVDYDTKKKHLLVTAAD---ESGIHLWDLRML-KAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDST  276 (346)
Q Consensus       203 ~~~~~~~~--v~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~-~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~  276 (346)
                      ...+....  ..... +|++..+++....   ++.|.+||+... ......+..+...+..+.|+ ++ .++++...|+.
T Consensus       309 ~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~-~lv~~~~~dg~  385 (741)
T 1yr2_A          309 VTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GN-RLFASYIHDAK  385 (741)
T ss_dssp             CEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BT-EEEEEEEETTE
T ss_pred             cEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CC-EEEEEEEECCE
Confidence            34444222  44443 3888844444332   356999998753 12233334444556677777 45 78888899998


Q ss_pred             EEEEecCCCCCCCCCcccccCCcccccccccccccc-ccceeeEEEeCCCCCcEEEEee---cCCeEEEeeec
Q 019059          277 VNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD-YEDSVYGLAWSSREPWIFASLS---YDGRVRNHMLE  345 (346)
Q Consensus       277 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~---~d~~v~vw~~~  345 (346)
                      .+||.+..                  .+.....+.. +...+..+.++|+++.++++.+   ..++|++||+.
T Consensus       386 ~~l~~~~~------------------~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~  440 (741)
T 1yr2_A          386 SQVLAFDL------------------DGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPA  440 (741)
T ss_dssp             EEEEEEET------------------TSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETT
T ss_pred             EEEEEEeC------------------CCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECC
Confidence            88876652                  1333444443 3566889999999875554444   34779999874

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.70  E-value=6.1e-13  Score=109.87  Aligned_cols=276  Identities=8%  Similarity=-0.037  Sum_probs=173.2

Q ss_pred             eEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEE
Q 019059           17 RCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIW   96 (346)
Q Consensus        17 ~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw   96 (346)
                      ..+..+..++++. +.+++.   .++.+..++..  +. ........+...+.++++.+++...++.    ..++.|..|
T Consensus        15 ~~~~~i~~d~~g~-l~v~~~---~~~~v~~~d~~--~~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~----~~~~~i~~~   83 (299)
T 2z2n_A           15 TGPYGITVSDKGK-VWITQH---KANMISCINLD--GK-ITEYPLPTPDAKVMCLTISSDGEVWFTE----NAANKIGRI   83 (299)
T ss_dssp             CCEEEEEECTTSC-EEEEET---TTTEEEEECTT--CC-EEEEECSSTTCCEEEEEECTTSCEEEEE----TTTTEEEEE
T ss_pred             CCccceEECCCCC-EEEEec---CCCcEEEEcCC--CC-eEEecCCcccCceeeEEECCCCCEEEeC----CCCCeEEEE
Confidence            3455566666665 444431   24567666544  22 2222222345678999999988766553    446788888


Q ss_pred             ecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEe
Q 019059           97 QIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAW  176 (346)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~  176 (346)
                      +...        .. ....+......+.++++.+++. ++++...++.|.+||. ++. .......   .....+..+++
T Consensus        84 ~~~g--------~~-~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~-~g~-~~~~~~~---~~~~~~~~i~~  148 (299)
T 2z2n_A           84 TKKG--------II-KEYTLPNPDSAPYGITEGPNGD-IWFTEMNGNRIGRITD-DGK-IREYELP---NKGSYPSFITL  148 (299)
T ss_dssp             CTTS--------CE-EEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCC-EEEEECS---STTCCEEEEEE
T ss_pred             CCCC--------cE-EEEeCCCcCCCceeeEECCCCC-EEEEecCCceEEEECC-CCC-EEEecCC---CCCCCCceEEE
Confidence            8641        11 1111222445789999999887 4555555789999998 333 2222111   12336789999


Q ss_pred             CCCCCcEEEEecCCeEEEEEccCCCccceeecc--c-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCc
Q 019059          177 DPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA--H-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTH  253 (346)
Q Consensus       177 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  253 (346)
                      .+++..+++...++.|..||. +++........  . +.++++++++. ++++...++.|.+||. +..........+..
T Consensus       149 ~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~  225 (299)
T 2z2n_A          149 GSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDA-LWFVEIIGNKIGRITT-SGEITEFKIPTPNA  225 (299)
T ss_dssp             CTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEEEEECSSTTC
T ss_pred             cCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCC-EEEEccCCceEEEECC-CCcEEEEECCCCCC
Confidence            999876665556789999998 55543321111  2 88999999987 7777767789999998 42311111233456


Q ss_pred             ceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccc-cccccccceeeEEEeCCCCCcEEEE
Q 019059          254 WTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLL-NSYSDYEDSVYGLAWSSREPWIFAS  332 (346)
Q Consensus       254 ~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~s  332 (346)
                      .+.+++++++| .++++...++.|..||...                    +.. ..+..+...+.++++ +++. ++++
T Consensus       226 ~~~~i~~~~~g-~l~v~~~~~~~i~~~d~~g--------------------~~~~~~~~~~~~~~~~i~~-~~g~-l~v~  282 (299)
T 2z2n_A          226 RPHAITAGAGI-DLWFTEWGANKIGRLTSNN--------------------IIEEYPIQIKSAEPHGICF-DGET-IWFA  282 (299)
T ss_dssp             CEEEEEECSTT-CEEEEETTTTEEEEEETTT--------------------EEEEEECSSSSCCEEEEEE-CSSC-EEEE
T ss_pred             CceeEEECCCC-CEEEeccCCceEEEECCCC--------------------ceEEEeCCCCCCccceEEe-cCCC-EEEE
Confidence            78999999999 7777666778999999842                    211 112334456899999 8886 6665


Q ss_pred             eecCCeEEEeeec
Q 019059          333 LSYDGRVRNHMLE  345 (346)
Q Consensus       333 ~~~d~~v~vw~~~  345 (346)
                      .. .+.+..++.+
T Consensus       283 ~~-~~~l~~~~~~  294 (299)
T 2z2n_A          283 ME-CDKIGKLTLI  294 (299)
T ss_dssp             ET-TTEEEEEEEC
T ss_pred             ec-CCcEEEEEcC
Confidence            55 4566666654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.69  E-value=1.3e-14  Score=119.49  Aligned_cols=200  Identities=12%  Similarity=0.119  Sum_probs=141.7

Q ss_pred             ccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeec-ccCCCceeeEEEEe-CCCCCcEEEEec-CCeEEE
Q 019059          118 AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK-QSSGMLHYLSGGAW-DPHDVNAVAATC-ESSVQF  194 (346)
Q Consensus       118 ~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~-~~~~~~~~v~~~~~-~~~~~~l~~~~~-d~~i~i  194 (346)
                      ++-..+.++++++++. ++++...++.|.+||.. ++....+... ...++...+..+++ .+++..+++... ++.|++
T Consensus        27 g~~~~p~~v~~~~~g~-l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~  104 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQND-IIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI  104 (286)
T ss_dssp             TCBSCEEEEEECTTCC-EEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred             CccCCCceEEECCCCC-EEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence            3445688999999987 45555678999999976 3322222111 11233446789999 466655555433 789999


Q ss_pred             EEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeec--CCCcceEEEEeCCCCCcEEE
Q 019059          195 WDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP--GHTHWTWAVCCNPEYDGFIL  269 (346)
Q Consensus       195 ~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~v~~v~~~~~~~~~l~  269 (346)
                      || .+++....+...+   +.+++++|++. ++++...++.|.+||..  ...+..+.  .+...+..++++|++ .+++
T Consensus       105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~--g~~~~~~~~~~~~~~p~~i~~~~~g-~l~v  179 (286)
T 1q7f_A          105 YN-QYGQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN--GNVLHKFGCSKHLEFPNGVVVNDKQ-EIFI  179 (286)
T ss_dssp             EC-TTSCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT--SCEEEEEECTTTCSSEEEEEECSSS-EEEE
T ss_pred             EC-CCCcEEEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCC--CCEEEEeCCCCccCCcEEEEECCCC-CEEE
Confidence            99 5566655554332   89999999997 88887888999999965  33444443  344568999999999 8888


Q ss_pred             EecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccc--cceeeEEEeCCCCCcEEEEeecCC-eEEEeeec
Q 019059          270 SAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDY--EDSVYGLAWSSREPWIFASLSYDG-RVRNHMLE  345 (346)
Q Consensus       270 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~s~~~d~-~v~vw~~~  345 (346)
                      +...++.|++||...                    +.+..+..+  ...+..++++|+|. ++++...++ .|++|+.+
T Consensus       180 ~~~~~~~i~~~~~~g--------------------~~~~~~~~~g~~~~p~~i~~d~~G~-l~v~~~~~~~~i~~~~~~  237 (286)
T 1q7f_A          180 SDNRAHCVKVFNYEG--------------------QYLRQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQD  237 (286)
T ss_dssp             EEGGGTEEEEEETTC--------------------CEEEEESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECTT
T ss_pred             EECCCCEEEEEcCCC--------------------CEEEEEccCCccCCCcEEEECCCCC-EEEEeCCCCEEEEEECCC
Confidence            888899999999854                    444444332  34688999999996 888887776 99999865

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.68  E-value=4e-13  Score=110.98  Aligned_cols=238  Identities=5%  Similarity=-0.066  Sum_probs=160.4

Q ss_pred             ccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecC
Q 019059           63 SHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDE  142 (346)
Q Consensus        63 ~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d  142 (346)
                      .+...+.++++.+++...++.    ..++.|.+|+...        ... ......+...+.++++.+++. ++++...+
T Consensus        12 ~~~~~~~~i~~d~~g~l~v~~----~~~~~v~~~d~~~--------~~~-~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~   77 (299)
T 2z2n_A           12 NQDTGPYGITVSDKGKVWITQ----HKANMISCINLDG--------KIT-EYPLPTPDAKVMCLTISSDGE-VWFTENAA   77 (299)
T ss_dssp             SSSCCEEEEEECTTSCEEEEE----TTTTEEEEECTTC--------CEE-EEECSSTTCCEEEEEECTTSC-EEEEETTT
T ss_pred             CcCCCccceEECCCCCEEEEe----cCCCcEEEEcCCC--------CeE-EecCCcccCceeeEEECCCCC-EEEeCCCC
Confidence            345678999999998766653    4467899998651        111 111223456789999999987 45554557


Q ss_pred             CeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeec--cc-eeEEEeCCC
Q 019059          143 ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH--AH-VRNVDYDTK  219 (346)
Q Consensus       143 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~-v~~~~~~~~  219 (346)
                      +.|..||.. +. ......   ......+.++++.+++..+++...++.|..||. +++.......  .. +..++++++
T Consensus        78 ~~i~~~~~~-g~-~~~~~~---~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~  151 (299)
T 2z2n_A           78 NKIGRITKK-GI-IKEYTL---PNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSD  151 (299)
T ss_dssp             TEEEEECTT-SC-EEEEEC---SSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTT
T ss_pred             CeEEEECCC-Cc-EEEEeC---CCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCC
Confidence            889999976 22 222211   112336889999998876666666889999998 5543322211  12 899999999


Q ss_pred             CCcEEEEecCCCeEEEEEcccCCcceee-ecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCC
Q 019059          220 KKHLLVTAADESGIHLWDLRMLKAPIQE-LPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVES  298 (346)
Q Consensus       220 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~  298 (346)
                      +. ++++...++.|..||. + ...... +......+..+++++++ .++++...++.|.+||. .              
T Consensus       152 g~-l~v~~~~~~~i~~~~~-~-g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~--------------  212 (299)
T 2z2n_A          152 NA-LWFTENQNNAIGRITE-S-GDITEFKIPTPASGPVGITKGNDD-ALWFVEIIGNKIGRITT-S--------------  212 (299)
T ss_dssp             SC-EEEEETTTTEEEEECT-T-CCEEEEECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-T--------------
T ss_pred             CC-EEEEeCCCCEEEEEcC-C-CcEEEeeCCCCCCcceeEEECCCC-CEEEEccCCceEEEECC-C--------------
Confidence            97 7777777789999998 4 322221 23344568899999999 77777767889999998 4              


Q ss_pred             cccccccccc-ccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          299 PNQRANSLLN-SYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       299 ~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                           ++... ....+...+.+++++++|. ++++...++.|..|+.+
T Consensus       213 -----g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~~  254 (299)
T 2z2n_A          213 -----GEITEFKIPTPNARPHAITAGAGID-LWFTEWGANKIGRLTSN  254 (299)
T ss_dssp             -----CCEEEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEEETT
T ss_pred             -----CcEEEEECCCCCCCceeEEECCCCC-EEEeccCCceEEEECCC
Confidence                 22211 1223445688999999986 77776677889888853

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.68  E-value=2e-14  Score=120.83  Aligned_cols=223  Identities=13%  Similarity=0.047  Sum_probs=148.3

Q ss_pred             CeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeee-----
Q 019059           42 NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL-----  116 (346)
Q Consensus        42 ~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~-----  116 (346)
                      +.+++++...  ..+....-.++-.....++++|++..+++    ...++.|++|+...        ....+..+     
T Consensus        69 ~~i~~~d~~~--g~~~~~~~~~~~~~p~gia~d~~g~l~v~----d~~~~~v~~~~~~g--------~~~~~~~~~~~~~  134 (329)
T 3fvz_A           69 DTILVIDPNN--AEILQSSGKNLFYLPHGLSIDTDGNYWVT----DVALHQVFKLDPHS--------KEGPLLILGRSMQ  134 (329)
T ss_dssp             CCEEEECTTT--CCEEEEECTTTCSSEEEEEECTTSCEEEE----ETTTTEEEEECTTC--------SSCCSEEESBTTB
T ss_pred             CcEEEEECCC--CeEEeccCCCccCCceEEEECCCCCEEEE----ECCCCEEEEEeCCC--------CeEEEEEecccCC
Confidence            3566664432  33332222234467899999999985544    35678999999751        11133333     


Q ss_pred             ----eccCCceEEEEeec-CCCCcEEEEe-cCCeEEEEEcCCCCCCceeeeccc-----CCCceeeEEEEeCCC-CCcEE
Q 019059          117 ----DAHVGKINCVLWWS-SGRHDKLVSI-DEENIFLWSLDCSNKNAQVQSKQS-----SGMLHYLSGGAWDPH-DVNAV  184 (346)
Q Consensus       117 ----~~~~~~i~~~~~~~-~~~~~~~~~~-~d~~i~vwd~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~-~~~l~  184 (346)
                          ..+-.....++++| ++. ++++.+ .++.|++|+.. +.....+.....     .++.....+++++|+ +..++
T Consensus       135 ~g~~~~~~~~P~~ia~~~~~g~-lyv~d~~~~~~I~~~~~~-g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v  212 (329)
T 3fvz_A          135 PGSDQNHFCQPTDVAVEPSTGA-VFVSDGYCNSRIVQFSPS-GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCV  212 (329)
T ss_dssp             CCCSTTCCSSEEEEEECTTTCC-EEEEECSSCCEEEEECTT-SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEE
T ss_pred             CCCCccccCCCcEEEEeCCCCe-EEEEeCCCCCeEEEEcCC-CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEE
Confidence                23344688999999 555 555555 58999999954 332222211111     123335789999998 55555


Q ss_pred             EEecCCeEEEEEccCCCccceeecc---c-eeEEEeCCCCCcEEEE-------ecCCCeEEEEEcccCCcceeee---cC
Q 019059          185 AATCESSVQFWDLRSMGKTNSIEHA---H-VRNVDYDTKKKHLLVT-------AADESGIHLWDLRMLKAPIQEL---PG  250 (346)
Q Consensus       185 ~~~~d~~i~i~d~~~~~~~~~~~~~---~-v~~~~~~~~~~~~l~~-------~~~dg~i~i~d~~~~~~~~~~~---~~  250 (346)
                      +...++.|++||..+++.+..+...   . +..++|+| +. ++.+       ...+..|++||+.+ ...+..+   ..
T Consensus       213 ~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~-~~~~~g~~~v~~~~~~~v~~~~~~~-g~~~~~~~~~~~  289 (329)
T 3fvz_A          213 ADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GF-LFAVNGKPYFGDQEPVQGFVMNFSS-GEIIDVFKPVRK  289 (329)
T ss_dssp             EETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TE-EEEEECCCCTTCSCCCCEEEEETTT-CCEEEEECCSSS
T ss_pred             EECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CE-EEEeCCCEEeccCCCcEEEEEEcCC-CeEEEEEcCCCC
Confidence            5556889999999988877776422   2 88999999 32 3333       33445899999887 5566666   35


Q ss_pred             CCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          251 HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       251 ~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      +...+..|+++|+| .++++...++.|++|++..
T Consensus       290 ~~~~p~~ia~~~dG-~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          290 HFDMPHDIVASEDG-TVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             CCSSEEEEEECTTS-EEEEEESSSCCEEEEEEEE
T ss_pred             ccCCeeEEEECCCC-CEEEEECCCCEEEEEeCCc
Confidence            66778999999999 9999999999999999875

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.68  E-value=1.3e-13  Score=114.18  Aligned_cols=233  Identities=9%  Similarity=0.045  Sum_probs=155.4

Q ss_pred             cceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeE
Q 019059           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENI  145 (346)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i  145 (346)
                      .-..+..|+|++..|+.+   ....+.|..|+..         ..+. ..+ .....+.+++++++++  ++++. ++.|
T Consensus        13 ~~~Egp~w~~~~~~l~~~---d~~~~~i~~~d~~---------~~~~-~~~-~~~~~~~~i~~~~dG~--l~v~~-~~~l   75 (297)
T 3g4e_A           13 RCGESPVWEEVSNSLLFV---DIPAKKVCRWDSF---------TKQV-QRV-TMDAPVSSVALRQSGG--YVATI-GTKF   75 (297)
T ss_dssp             SBEEEEEEETTTTEEEEE---ETTTTEEEEEETT---------TCCE-EEE-ECSSCEEEEEEBTTSS--EEEEE-TTEE
T ss_pred             ccccCCeEECCCCEEEEE---ECCCCEEEEEECC---------CCcE-EEE-eCCCceEEEEECCCCC--EEEEE-CCeE
Confidence            345678999987777765   3567899999986         2222 223 3456799999999998  44444 6789


Q ss_pred             EEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecC---------CeEEEEEccCCCccceeecc-c-eeEE
Q 019059          146 FLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE---------SSVQFWDLRSMGKTNSIEHA-H-VRNV  214 (346)
Q Consensus       146 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~~~-~-v~~~  214 (346)
                      .+||.++++. ..+...........++.++++|+++.+++....         ..-.+|.+........+... . .+.+
T Consensus        76 ~~~d~~~g~~-~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi  154 (297)
T 3g4e_A           76 CALNWKEQSA-VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGL  154 (297)
T ss_dssp             EEEETTTTEE-EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEE
T ss_pred             EEEECCCCcE-EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccce
Confidence            9999876542 222221111223468899999999866554321         22344444432222222212 2 8899


Q ss_pred             EeCCCCCcEEEEecCCCeEEEEEcc-cCCc-----ceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCC
Q 019059          215 DYDTKKKHLLVTAADESGIHLWDLR-MLKA-----PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHD  288 (346)
Q Consensus       215 ~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~-----~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  288 (346)
                      +|+|+++.++++.+.++.|.+||+. ....     ....+..+...+..++++++| ++.++...++.|.+||..+    
T Consensus       155 ~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G-~lwva~~~~~~v~~~d~~t----  229 (297)
T 3g4e_A          155 DWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEG-KLWVACYNGGRVIRLDPVT----  229 (297)
T ss_dssp             EECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTS-CEEEEEETTTEEEEECTTT----
T ss_pred             EEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCC-CEEEEEcCCCEEEEEcCCC----
Confidence            9999998566777778899999974 2121     122233334567889999999 8777777788999999987    


Q ss_pred             CCCcccccCCccccccccccccccccceeeEEEeC-CCCCcEEEEeecC
Q 019059          289 ELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWS-SREPWIFASLSYD  336 (346)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~s~~~d  336 (346)
                                     ++.+..+..+...+++++|. |+++.++++...+
T Consensus       230 ---------------G~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~  263 (297)
T 3g4e_A          230 ---------------GKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCARD  263 (297)
T ss_dssp             ---------------CCEEEEEECSSSBEEEEEEESGGGCEEEEEEBCT
T ss_pred             ---------------ceEEEEEECCCCCceEEEEeCCCCCEEEEEcCCc
Confidence                           77777777666679999998 8887666666544

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.66  E-value=6.8e-13  Score=118.69  Aligned_cols=290  Identities=9%  Similarity=0.039  Sum_probs=188.3

Q ss_pred             eccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeec----CCCCceEEEEeecCCcceEEEE
Q 019059           21 DVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSC----PFDQRIFSTVFSTGESYGAAIW   96 (346)
Q Consensus        21 ~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~l~~~~~~~~~d~~i~vw   96 (346)
                      .+.+++++..++++.    .++.+.+++++....... ..+.. ......++|+    |++++++++.   ..++.|.|+
T Consensus       201 ~v~~SpDGr~lyv~~----~dg~V~viD~~~~t~~~v-~~i~~-G~~P~~ia~s~~~~pDGk~l~v~n---~~~~~v~Vi  271 (567)
T 1qks_A          201 ISRLSASGRYLFVIG----RDGKVNMIDLWMKEPTTV-AEIKI-GSEARSIETSKMEGWEDKYAIAGA---YWPPQYVIM  271 (567)
T ss_dssp             EEEECTTSCEEEEEE----TTSEEEEEETTSSSCCEE-EEEEC-CSEEEEEEECCSTTCTTTEEEEEE---EETTEEEEE
T ss_pred             ceEECCCCCEEEEEc----CCCeEEEEECCCCCCcEe-EEEec-CCCCceeEEccccCCCCCEEEEEE---ccCCeEEEE
Confidence            355777887777764    467899999873223333 23222 3346789999    6999998874   355789999


Q ss_pred             ecCcccCCCCCccceeeeeeec----------cCC-ceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccC
Q 019059           97 QIPELYGQLNSPQLERIAALDA----------HVG-KINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSS  165 (346)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~----------~~~-~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~  165 (346)
                      |..         +.+++..+..          |.. .+..+..++++..+++....+|.|.++|........ ...... 
T Consensus       272 D~~---------t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~-v~~i~~-  340 (567)
T 1qks_A          272 DGE---------TLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLK-TTEISA-  340 (567)
T ss_dssp             ETT---------TCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEE-EEEEEC-
T ss_pred             ECC---------CCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccce-eeeeec-
Confidence            987         5666665532          212 677888899887544444667999999987543211 111111 


Q ss_pred             CCceeeEEEEeCCCCCcEEEEe-cCCeEEEEEccCCCccceeec-cc----eeEEE-eCCCCCcEEEEec-CCCeEEEEE
Q 019059          166 GMLHYLSGGAWDPHDVNAVAAT-CESSVQFWDLRSMGKTNSIEH-AH----VRNVD-YDTKKKHLLVTAA-DESGIHLWD  237 (346)
Q Consensus       166 ~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~-~~----v~~~~-~~~~~~~~l~~~~-~dg~i~i~d  237 (346)
                        ......+.|+|++++++++. .++.|.++|+.+++....+.. +.    -.... ++|++..+++++. .++.|.++|
T Consensus       341 --~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid  418 (567)
T 1qks_A          341 --ERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIG  418 (567)
T ss_dssp             --CSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEE
T ss_pred             --cccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEec
Confidence              12466789999999988877 478999999999987766654 22    12333 5787543666654 468999999


Q ss_pred             cccCC------cceeeecCCCcceEEEEeCCCCCcEEEEecC-------CCeEEEEecCCCCC--CCCCcccccCCcccc
Q 019059          238 LRMLK------APIQELPGHTHWTWAVCCNPEYDGFILSAGT-------DSTVNLWLVSTSNH--DELPSESLVESPNQR  302 (346)
Q Consensus       238 ~~~~~------~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~-------d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~  302 (346)
                      ....+      +.++++......-..+..+|++ +++.+...       .++|.++|+.+...  ...            
T Consensus       419 ~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~-~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~------------  485 (567)
T 1qks_A          419 TDPEGHPDNAWKILDSFPALGGGSLFIKTHPNS-QYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDP------------  485 (567)
T ss_dssp             CCTTTCTTTBTSEEEEEECSCSCCCCEECCTTC-SEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCC------------
T ss_pred             CCCCCCccccCEEEEEEecCCCCCEEEEeCCCC-CeEEEecCCCCCcccCceEEEEECCcccccccCC------------
Confidence            87521      2456666544444567899999 77776552       35899999987200  000            


Q ss_pred             cccccc-----ccccccceeeEEEeCCCCCcEEEEee----cCCeEEEeeec
Q 019059          303 ANSLLN-----SYSDYEDSVYGLAWSSREPWIFASLS----YDGRVRNHMLE  345 (346)
Q Consensus       303 ~~~~~~-----~~~~~~~~v~~~~~~~~~~~~l~s~~----~d~~v~vw~~~  345 (346)
                      ..+.+.     .+......+..+.|+|+|..++++..    .++.|.|+|..
T Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~  537 (567)
T 1qks_A          486 EFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDK  537 (567)
T ss_dssp             CEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETT
T ss_pred             CcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECC
Confidence            001111     11112346889999999997777754    37889998854

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.64  E-value=3.5e-13  Score=120.57  Aligned_cols=219  Identities=13%  Similarity=0.045  Sum_probs=153.1

Q ss_pred             cCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcC--CCCCCceeeeccc
Q 019059           87 TGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLD--CSNKNAQVQSKQS  164 (346)
Q Consensus        87 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~--~~~~~~~~~~~~~  164 (346)
                      ...++.|.++|..         +.+.+.++... ..+..+.|+|||++ +++++.++.|.+||+.  +.+...++..   
T Consensus       173 ~~~~~~V~viD~~---------t~~v~~~i~~g-~~p~~v~~SpDGr~-lyv~~~dg~V~viD~~~~t~~~v~~i~~---  238 (567)
T 1qks_A          173 LRDAGQIALIDGS---------TYEIKTVLDTG-YAVHISRLSASGRY-LFVIGRDGKVNMIDLWMKEPTTVAEIKI---  238 (567)
T ss_dssp             ETTTTEEEEEETT---------TCCEEEEEECS-SCEEEEEECTTSCE-EEEEETTSEEEEEETTSSSCCEEEEEEC---
T ss_pred             eCCCCeEEEEECC---------CCeEEEEEeCC-CCccceEECCCCCE-EEEEcCCCeEEEEECCCCCCcEeEEEec---
Confidence            3678899999998         67777777543 35679999999996 5566779999999995  4433322222   


Q ss_pred             CCCceeeEEEEeC----CCCCcEEEEec-CCeEEEEEccCCCccceeecc-------------ceeEEEeCCCCCcEEEE
Q 019059          165 SGMLHYLSGGAWD----PHDVNAVAATC-ESSVQFWDLRSMGKTNSIEHA-------------HVRNVDYDTKKKHLLVT  226 (346)
Q Consensus       165 ~~~~~~v~~~~~~----~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~-------------~v~~~~~~~~~~~~l~~  226 (346)
                       +  .....++|+    |+|++++++.. ++.+.++|..+.+.+..+...             .+..+..+++++.+++.
T Consensus       239 -G--~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~  315 (567)
T 1qks_A          239 -G--SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN  315 (567)
T ss_dssp             -C--SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEE
T ss_pred             -C--CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEE
Confidence             1  146789999    69999888875 699999999998877665421             26788889988866777


Q ss_pred             ecCCCeEEEEEcccCCcc-eeeecCCCcceEEEEeCCCCCcEEE-EecCCCeEEEEecCCCCCCCCCcccccCCcccccc
Q 019059          227 AADESGIHLWDLRMLKAP-IQELPGHTHWTWAVCCNPEYDGFIL-SAGTDSTVNLWLVSTSNHDELPSESLVESPNQRAN  304 (346)
Q Consensus       227 ~~~dg~i~i~d~~~~~~~-~~~~~~~~~~v~~v~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  304 (346)
                      ...+|.|.++|....... +..+ ........+.|+|++ ++|+ +...++.|.++|+.+                   +
T Consensus       316 ~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdg-r~~~va~~~sn~V~ViD~~t-------------------~  374 (567)
T 1qks_A          316 VKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSH-RYFITAANARNKLVVIDTKE-------------------G  374 (567)
T ss_dssp             ETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTS-CEEEEEEGGGTEEEEEETTT-------------------T
T ss_pred             ecCCCeEEEEecCCCccceeeee-eccccccCceECCCC-CEEEEEeCCCCeEEEEECCC-------------------C
Confidence            777899999998753321 2222 234456788999999 6654 455678999999998                   5


Q ss_pred             cccccccc-----ccceeeEEE-eCCCCCcEEEEee-cCCeEEEeeec
Q 019059          305 SLLNSYSD-----YEDSVYGLA-WSSREPWIFASLS-YDGRVRNHMLE  345 (346)
Q Consensus       305 ~~~~~~~~-----~~~~v~~~~-~~~~~~~~l~s~~-~d~~v~vw~~~  345 (346)
                      +.+..+.-     |.+  ..+. ++|++..++++.. .++.|.+++.+
T Consensus       375 kl~~~i~vgg~~Phpg--~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~  420 (567)
T 1qks_A          375 KLVAIEDTGGQTPHPG--RGANFVHPTFGPVWATSHMGDDSVALIGTD  420 (567)
T ss_dssp             EEEEEEECSSSSBCCT--TCEEEEETTTEEEEEEEBSSSSEEEEEECC
T ss_pred             cEEEEEeccCcCCCCc--cceeeECCCCCcEEEeCCCCCCeEEEecCC
Confidence            54443322     322  1222 5787554555553 46889999864

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.64  E-value=8.7e-14  Score=129.13  Aligned_cols=237  Identities=10%  Similarity=0.018  Sum_probs=148.5

Q ss_pred             cCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeee---ee-eccCCceEEEEeecCCCCcEEEEecCC----eE
Q 019059           74 CPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIA---AL-DAHVGKINCVLWWSSGRHDKLVSIDEE----NI  145 (346)
Q Consensus        74 ~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~---~~-~~~~~~i~~~~~~~~~~~~~~~~~~d~----~i  145 (346)
                      +|+|++++.....++.. .-.+|-.+..     ....+.+.   .+ ..|...+..++|||||++++++...+|    .|
T Consensus        80 ~~dG~~~~~~~~~~~~~-~~~l~~~~~~-----~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i  153 (710)
T 2xdw_A           80 FKKGKRYFYFYNTGLQN-QRVLYVQDSL-----EGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTI  153 (710)
T ss_dssp             EEETTEEEEEEECSSCS-SCEEEEESST-----TSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEE
T ss_pred             EEECCEEEEEEEcCCce-EEEEEEEcCC-----CCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEE
Confidence            38898888775433322 1234544311     01112111   11 124446889999999997555554444    89


Q ss_pred             EEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCe----------------EEEEEccCCCcc--ceee
Q 019059          146 FLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESS----------------VQFWDLRSMGKT--NSIE  207 (346)
Q Consensus       146 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~----------------i~i~d~~~~~~~--~~~~  207 (346)
                      ++||+.+++........      ..+..++|+||++.|+.+..++.                |++|++.+++..  ..+.
T Consensus       154 ~v~d~~tg~~~~~~~~~------~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~  227 (710)
T 2xdw_A          154 KFMKVDGAKELPDVLER------VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAE  227 (710)
T ss_dssp             EEEETTTTEEEEEEEEE------ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEEC
T ss_pred             EEEECCCCCCCcccccC------cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEec
Confidence            99999876543222211      13567999999999999887655                999999887632  2122


Q ss_pred             c-cc---eeEEEeCCCCCcEEEEecC----CCeEEEEEccc------CCcceeeecCCCcceEEEEeCCCCCcEEEEecC
Q 019059          208 H-AH---VRNVDYDTKKKHLLVTAAD----ESGIHLWDLRM------LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGT  273 (346)
Q Consensus       208 ~-~~---v~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~------~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~  273 (346)
                      . .+   +..+.|+|++++++++...    +..|++||+..      .......+..+...+.. .|+|+| ..|+..+.
T Consensus       228 ~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg-~~l~~~s~  305 (710)
T 2xdw_A          228 FPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEG-TVFTFKTN  305 (710)
T ss_dssp             CTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEET-TEEEEEEC
T ss_pred             cCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccC-CEEEEEEC
Confidence            1 12   7799999999954444331    56899999975      33245666666666655 488898 55554443


Q ss_pred             -C---CeEEEEecCCCCCCCCCcccccCCccccccc--cccccccccc--eeeEEEeCCCCCcEEEEeecCCeEEE--ee
Q 019059          274 -D---STVNLWLVSTSNHDELPSESLVESPNQRANS--LLNSYSDYED--SVYGLAWSSREPWIFASLSYDGRVRN--HM  343 (346)
Q Consensus       274 -d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~d~~v~v--w~  343 (346)
                       +   ..|.+||+..                   +.  ....+..|..  .+.++.|++++ .++++...|+..+|  |+
T Consensus       306 ~~~~~~~l~~~d~~~-------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~-~lv~~~~~~g~~~l~~~~  365 (710)
T 2xdw_A          306 RHSPNYRLINIDFTD-------------------PEESKWKVLVPEHEKDVLEWVACVRSN-FLVLCYLHDVKNTLQLHD  365 (710)
T ss_dssp             TTCTTCEEEEEETTS-------------------CCGGGCEEEECCCSSCEEEEEEEETTT-EEEEEEEETTEEEEEEEE
T ss_pred             CCCCCCEEEEEeCCC-------------------CCcccceeccCCCCCCeEEEEEEEcCC-EEEEEEEECCEEEEEEEE
Confidence             3   3699999886                   32  1233334433  68889999766 48888888986554  55


Q ss_pred             e
Q 019059          344 L  344 (346)
Q Consensus       344 ~  344 (346)
                      +
T Consensus       366 ~  366 (710)
T 2xdw_A          366 L  366 (710)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.64  E-value=8e-14  Score=115.32  Aligned_cols=200  Identities=9%  Similarity=0.007  Sum_probs=138.7

Q ss_pred             eeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeE
Q 019059          113 IAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSV  192 (346)
Q Consensus       113 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  192 (346)
                      +..+..+.....+++|+|+++.+++++..++.|..|+..++  ...+..     +...+.+++++|+++.+++...++.|
T Consensus        20 ~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~-----~~~~~~~l~~~~dg~l~v~~~~~~~i   92 (296)
T 3e5z_A           20 ARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMH-----PSHHQNGHCLNKQGHLIACSHGLRRL   92 (296)
T ss_dssp             CEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEES-----SCSSEEEEEECTTCCEEEEETTTTEE
T ss_pred             EEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEEC-----CCCCcceeeECCCCcEEEEecCCCeE
Confidence            34454556677899999999866777777899999999865  222211     23368899999999876666567899


Q ss_pred             EEEEccCCCccceeec--cc----eeEEEeCCCCCcEEEE----ec-------------CCCeEEEEEcccCCcceeeec
Q 019059          193 QFWDLRSMGKTNSIEH--AH----VRNVDYDTKKKHLLVT----AA-------------DESGIHLWDLRMLKAPIQELP  249 (346)
Q Consensus       193 ~i~d~~~~~~~~~~~~--~~----v~~~~~~~~~~~~l~~----~~-------------~dg~i~i~d~~~~~~~~~~~~  249 (346)
                      .+||..+++.......  ..    +..++++|+|. ++++    |.             ..+.|..++..  + .+..+.
T Consensus        93 ~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g-~~~~~~  168 (296)
T 3e5z_A           93 ERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--G-TLSAPI  168 (296)
T ss_dssp             EEECSTTCCEEEEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--S-CEEEEE
T ss_pred             EEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC--C-CEEEee
Confidence            9999987764332211  11    67899999998 7776    32             12455555544  2 344455


Q ss_pred             CCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccc---ccccccccceeeEEEeCCCC
Q 019059          250 GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSL---LNSYSDYEDSVYGLAWSSRE  326 (346)
Q Consensus       250 ~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~  326 (346)
                      .+......++|+|++ ..+++.+.++.|.+|++..                  .+..   ...+..+...+.+++++++|
T Consensus       169 ~~~~~~~gi~~s~dg-~~lv~~~~~~~i~~~~~~~------------------~g~~~~~~~~~~~~~~~p~~i~~d~~G  229 (296)
T 3e5z_A          169 RDRVKPNGLAFLPSG-NLLVSDTGDNATHRYCLNA------------------RGETEYQGVHFTVEPGKTDGLRVDAGG  229 (296)
T ss_dssp             CCCSSEEEEEECTTS-CEEEEETTTTEEEEEEECS------------------SSCEEEEEEEECCSSSCCCSEEEBTTS
T ss_pred             cCCCCCccEEECCCC-CEEEEeCCCCeEEEEEECC------------------CCcCcCCCeEeeCCCCCCCeEEECCCC
Confidence            566778999999999 7778888889999999872                  0221   11112244457789999999


Q ss_pred             CcEEEEeecCCeEEEeeec
Q 019059          327 PWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       327 ~~~l~s~~~d~~v~vw~~~  345 (346)
                      . ++++.  ++.|.+|+.+
T Consensus       230 ~-l~v~~--~~~v~~~~~~  245 (296)
T 3e5z_A          230 L-IWASA--GDGVHVLTPD  245 (296)
T ss_dssp             C-EEEEE--TTEEEEECTT
T ss_pred             C-EEEEc--CCeEEEECCC
Confidence            7 66655  7889999865

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.62  E-value=1.3e-12  Score=109.42  Aligned_cols=227  Identities=7%  Similarity=-0.036  Sum_probs=147.1

Q ss_pred             eEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEE
Q 019059           68 IWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFL  147 (346)
Q Consensus        68 v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~v  147 (346)
                      ..++.|+|+++.++.+   +..++.|..|+.+         ..+. ..+ .....+.++.|+++++  ++++. +..|.+
T Consensus        51 ~egp~~~~~~~~l~~~---d~~~~~i~~~d~~---------~~~~-~~~-~~~~~v~~i~~~~dg~--l~v~~-~~gl~~  113 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWF---NILERELHELHLA---------SGRK-TVH-ALPFMGSALAKISDSK--QLIAS-DDGLFL  113 (326)
T ss_dssp             EEEEEEETTTTEEEEE---EGGGTEEEEEETT---------TTEE-EEE-ECSSCEEEEEEEETTE--EEEEE-TTEEEE
T ss_pred             CcCCeEeCCCCEEEEE---ECCCCEEEEEECC---------CCcE-EEE-ECCCcceEEEEeCCCe--EEEEE-CCCEEE
Confidence            4578899987777765   3456789999986         2222 223 2346799999999998  44444 345999


Q ss_pred             EEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec------CCeEEEEEccCCCccceeecc-c-eeEEEeCCC
Q 019059          148 WSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC------ESSVQFWDLRSMGKTNSIEHA-H-VRNVDYDTK  219 (346)
Q Consensus       148 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~-~-v~~~~~~~~  219 (346)
                      ||..+++. ..+...........+..++++|+++.+++...      .+.|..+|  +++. ..+... . ...++|+|+
T Consensus       114 ~d~~~g~~-~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~-~~~~~~~~~~~~i~~s~d  189 (326)
T 2ghs_A          114 RDTATGVL-TLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKV-TKLFADISIPNSICFSPD  189 (326)
T ss_dssp             EETTTCCE-EEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEE-EEEEEEESSEEEEEECTT
T ss_pred             EECCCCcE-EEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcE-EEeeCCCcccCCeEEcCC
Confidence            99876542 22221111112346889999999986655432      24566666  4432 222212 2 789999999


Q ss_pred             CCcEEEEecCCCeEEEEEcc--cC-C----cceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCc
Q 019059          220 KKHLLVTAADESGIHLWDLR--ML-K----APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPS  292 (346)
Q Consensus       220 ~~~~l~~~~~dg~i~i~d~~--~~-~----~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  292 (346)
                      ++.++++...++.|.+||+.  +. .    .....+......+..++++++| .+.++...++.|.+||..         
T Consensus       190 g~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G-~lwva~~~~~~v~~~d~~---------  259 (326)
T 2ghs_A          190 GTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEG-HIWNARWGEGAVDRYDTD---------  259 (326)
T ss_dssp             SCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTS-CEEEEEETTTEEEEECTT---------
T ss_pred             CCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCC-CEEEEEeCCCEEEEECCC---------
Confidence            98555666677899999986  32 1    1122222334567889999999 777766667889999984         


Q ss_pred             ccccCCccccccccccccccccceeeEEEeC-CCCCcEEEEeecC
Q 019059          293 ESLVESPNQRANSLLNSYSDYEDSVYGLAWS-SREPWIFASLSYD  336 (346)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~s~~~d  336 (346)
                                 ++.+..+..+...+++++|+ |+++.++++...+
T Consensus       260 -----------g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~  293 (326)
T 2ghs_A          260 -----------GNHIARYEVPGKQTTCPAFIGPDASRLLVTSARE  293 (326)
T ss_dssp             -----------CCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred             -----------CCEEEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence                       45555555555569999998 8877565665554

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.62  E-value=3.9e-13  Score=109.70  Aligned_cols=204  Identities=11%  Similarity=-0.004  Sum_probs=151.8

Q ss_pred             cCCcceEEEEecCcccCCCCCccceeeeeeeccC-CceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccC
Q 019059           87 TGESYGAAIWQIPELYGQLNSPQLERIAALDAHV-GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSS  165 (346)
Q Consensus        87 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~  165 (346)
                      ++.++.|.+||.+         +++.+-++..+. ..+.++.++|+|+  ++++ .++.|..||. +++...++...   
T Consensus        11 ~~~~~~v~~~d~~---------tG~~~w~~~~~~~~~~~~~~~~pdG~--ilvs-~~~~V~~~d~-~G~~~W~~~~~---   74 (276)
T 3no2_A           11 GSGWNKIAIINKD---------TKEIVWEYPLEKGWECNSVAATKAGE--ILFS-YSKGAKMITR-DGRELWNIAAP---   74 (276)
T ss_dssp             CTTCSEEEEEETT---------TTEEEEEEECCTTCCCCEEEECTTSC--EEEE-CBSEEEEECT-TSCEEEEEECC---
T ss_pred             eCCCCEEEEEECC---------CCeEEEEeCCCccCCCcCeEECCCCC--EEEe-CCCCEEEECC-CCCEEEEEcCC---
Confidence            5789999999987         688888887765 4789999999998  4443 4788999998 66655554431   


Q ss_pred             CCceeeEEEEeCCCCCcEEEEec-CCeEEEEEccCCCccceeec------cc--eeEEEeCCCCCcEEEEecCCCeEEEE
Q 019059          166 GMLHYLSGGAWDPHDVNAVAATC-ESSVQFWDLRSMGKTNSIEH------AH--VRNVDYDTKKKHLLVTAADESGIHLW  236 (346)
Q Consensus       166 ~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~------~~--v~~~~~~~~~~~~l~~~~~dg~i~i~  236 (346)
                       ....+.++.+.|+++.+++.+. ++.+..+|. +++.+..+..      .+  ...++..+++. ++++...++.|..|
T Consensus        75 -~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~-~lv~~~~~~~v~~~  151 (276)
T 3no2_A           75 -AGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGN-YLVPLFATSEVREI  151 (276)
T ss_dssp             -TTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSC-EEEEETTTTEEEEE
T ss_pred             -CCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCC-EEEEecCCCEEEEE
Confidence             1236788899999999998887 778888875 5665554431      12  55677889998 88888899999999


Q ss_pred             EcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccccccc--
Q 019059          237 DLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYE--  314 (346)
Q Consensus       237 d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  314 (346)
                      |..  ++.+.++... ..+.++...+++ .++++++.++.|..+|..+                   ++.+.++..+.  
T Consensus       152 d~~--G~~~w~~~~~-~~~~~~~~~~~g-~~~v~~~~~~~v~~~d~~t-------------------G~~~w~~~~~~~~  208 (276)
T 3no2_A          152 APN--GQLLNSVKLS-GTPFSSAFLDNG-DCLVACGDAHCFVQLNLES-------------------NRIVRRVNANDIE  208 (276)
T ss_dssp             CTT--SCEEEEEECS-SCCCEEEECTTS-CEEEECBTTSEEEEECTTT-------------------CCEEEEEEGGGSB
T ss_pred             CCC--CCEEEEEECC-CCccceeEcCCC-CEEEEeCCCCeEEEEeCcC-------------------CcEEEEecCCCCC
Confidence            986  4466667653 455667888999 8888888888999999997                   66655554321  


Q ss_pred             ----ceeeEEEeCCCCCcEEEEe
Q 019059          315 ----DSVYGLAWSSREPWIFASL  333 (346)
Q Consensus       315 ----~~v~~~~~~~~~~~~l~s~  333 (346)
                          ..+..+...++|. ++++.
T Consensus       209 ~~~l~~~~~~~~~~~G~-i~v~~  230 (276)
T 3no2_A          209 GVQLFFVAQLFPLQNGG-LYICN  230 (276)
T ss_dssp             SCCCSEEEEEEECTTSC-EEEEE
T ss_pred             CccccccccceEcCCCC-EEEEe
Confidence                2367888888886 65555

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.62  E-value=1.1e-11  Score=102.24  Aligned_cols=274  Identities=7%  Similarity=-0.034  Sum_probs=168.4

Q ss_pred             eeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecC
Q 019059           20 SDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIP   99 (346)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~   99 (346)
                      ..+..++++. +.++.   ..++.+..++..   .......+..+...+.++++.+++...++.    ..++.|..+|..
T Consensus        23 ~~i~~d~~g~-l~v~~---~~~~~v~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~----~~~~~v~~~d~~   91 (300)
T 2qc5_A           23 YGITSSEDGK-VWFTQ---HKANKISSLDQS---GRIKEFEVPTPDAKVMCLIVSSLGDIWFTE----NGANKIGKLSKK   91 (300)
T ss_dssp             EEEEECTTSC-EEEEE---TTTTEEEEECTT---SCEEEEECSSTTCCEEEEEECTTSCEEEEE----TTTTEEEEECTT
T ss_pred             ceeeECCCCC-EEEEc---CCCCeEEEECCC---CceEEEECCCCCCcceeEEECCCCCEEEEe----cCCCeEEEECCC
Confidence            3444555554 33332   134566666543   222222222334678999999988755553    446778888865


Q ss_pred             cccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCC
Q 019059          100 ELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPH  179 (346)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  179 (346)
                      .        .. ....+......+.++++.+++. ++++...++.|..+|.. ++ ......   ......+..+++.++
T Consensus        92 g--------~~-~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~-~~~~~~---~~~~~~~~~i~~d~~  156 (300)
T 2qc5_A           92 G--------GF-TEYPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-GT-IYEYDL---PNKGSYPAFITLGSD  156 (300)
T ss_dssp             S--------CE-EEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SC-EEEEEC---SSTTCCEEEEEECTT
T ss_pred             C--------Ce-EEecCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCC-CC-EEEccC---CCCCCCceeEEECCC
Confidence            1        11 1112222346689999999887 45555557889999876 33 222211   112336789999999


Q ss_pred             CCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceE
Q 019059          180 DVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTW  256 (346)
Q Consensus       180 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~  256 (346)
                      ++..++...++.|..+|. +++.........   +..+++++++. ++++....+.|.+||.. .......+..+...+.
T Consensus       157 g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~  233 (300)
T 2qc5_A          157 NALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGA-LWFVEIMGNKIGRITTT-GEISEYDIPTPNARPH  233 (300)
T ss_dssp             SSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECTT-CCEEEEECSSTTCCEE
T ss_pred             CCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCC-EEEEccCCCEEEEEcCC-CcEEEEECCCCCCCce
Confidence            885555545788999998 454332111111   89999999987 77776677789999983 2211122233456788


Q ss_pred             EEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecC
Q 019059          257 AVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYD  336 (346)
Q Consensus       257 ~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  336 (346)
                      +++++++| .+.++...++.|..||...                   ......+......+.+++++++|. ++++.. .
T Consensus       234 ~i~~d~~g-~l~v~~~~~~~i~~~~~~g-------------------~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~-~  291 (300)
T 2qc5_A          234 AITAGKNS-EIWFTEWGANQIGRITNDN-------------------TIQEYQLQTENAEPHGITFGKDGS-VWFALK-C  291 (300)
T ss_dssp             EEEECSTT-CEEEEETTTTEEEEECTTS-------------------CEEEEECCSTTCCCCCEEECTTSC-EEEECS-S
T ss_pred             EEEECCCC-CEEEeccCCCeEEEECCCC-------------------cEEEEECCccCCccceeEeCCCCC-EEEEcc-C
Confidence            99999999 7777766678999999843                   111111222334578999999986 666555 4


Q ss_pred             CeEEEeeec
Q 019059          337 GRVRNHMLE  345 (346)
Q Consensus       337 ~~v~vw~~~  345 (346)
                       .|..++.+
T Consensus       292 -~i~~~~p~  299 (300)
T 2qc5_A          292 -KIGKLNLN  299 (300)
T ss_dssp             -EEEEEEEC
T ss_pred             -ceEEeCCC
Confidence             77777764

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.61  E-value=8.6e-13  Score=113.90  Aligned_cols=238  Identities=6%  Similarity=0.043  Sum_probs=157.8

Q ss_pred             cceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCC--
Q 019059           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEE--  143 (346)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~--  143 (346)
                      .....++|+|++. |+++   ...++.|++||.+         .......... ..... ++|+++++. ++++..++  
T Consensus       131 ~~P~~la~d~~g~-lyv~---d~~~~~I~~id~~---------~g~~~~~~~~-~~~~~-ia~~~~g~~-l~~~d~~~~~  194 (409)
T 3hrp_A          131 KYMWGIAAVGNNT-VLAY---QRDDPRVRLISVD---------DNKVTTVHPG-FKGGK-PAVTKDKQR-VYSIGWEGTH  194 (409)
T ss_dssp             CCEEEEEECSTTE-EEEE---ETTTTEEEEEETT---------TTEEEEEEET-CCBCB-CEECTTSSE-EEEEBSSTTC
T ss_pred             CCceEEEEeCCCC-EEEE---ecCCCcEEEEECC---------CCEEEEeecc-CCCCc-eeEecCCCc-EEEEecCCCc
Confidence            4678899999887 4443   3466899999987         3343333333 23334 999999985 55554433  


Q ss_pred             eEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCcccee---eccc--e--e-EEE
Q 019059          144 NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSI---EHAH--V--R-NVD  215 (346)
Q Consensus       144 ~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~---~~~~--v--~-~~~  215 (346)
                      .|.+++.......... ..........+.+++++|++..|+++..++.|+.||..++......   ..+.  .  . .++
T Consensus       195 ~I~~~d~~~~~~~~~~-g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia  273 (409)
T 3hrp_A          195 TVYVYMKASGWAPTRI-GQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLI  273 (409)
T ss_dssp             EEEEEEGGGTTCEEEE-EECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEE
T ss_pred             eEEEEEcCCCceeEEe-eeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEE
Confidence            8888888755432222 1110112236788999996666777767889999999877532210   1112  2  3 999


Q ss_pred             eCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCC---------------cceEEEEeCCCCCcEEEEec-CCCeEEE
Q 019059          216 YDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHT---------------HWTWAVCCNPEYDGFILSAG-TDSTVNL  279 (346)
Q Consensus       216 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------------~~v~~v~~~~~~~~~l~s~~-~d~~i~i  279 (346)
                      |+|++..++++-..++.|+.|+... .  +..+.++.               .....++++|+| .++++-. .++.|+.
T Consensus       274 ~~p~~g~lyv~d~~~~~I~~~~~~g-~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG-~lyvad~~~~~~I~~  349 (409)
T 3hrp_A          274 YYFVDSNFYMSDQNLSSVYKITPDG-E--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDG-NFYIVDGFKGYCLRK  349 (409)
T ss_dssp             EETTTTEEEEEETTTTEEEEECTTC-C--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC-CEEEEETTTTCEEEE
T ss_pred             EeCCCCEEEEEeCCCCEEEEEecCC-C--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC-CEEEEeCCCCCEEEE
Confidence            9996554788877888999998763 2  33333322               347899999999 7777877 8899999


Q ss_pred             EecCCCCCCCCCcccccCCccccccccccccccc---------------cceeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059          280 WLVSTSNHDELPSESLVESPNQRANSLLNSYSDY---------------EDSVYGLAWSSREPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       280 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~  344 (346)
                      |++..                   +. +.++.++               -.....++++|++. ++++-..+++|+.+++
T Consensus       350 ~~~~~-------------------G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~-lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          350 LDILD-------------------GY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGG-YWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EETTT-------------------TE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSE-EEEEESTTCEEEEEEE
T ss_pred             EECCC-------------------CE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCC-EEEEECCCCeEEEEEe
Confidence            99765                   21 1111111               23478999999975 8888888999999887


Q ss_pred             c
Q 019059          345 E  345 (346)
Q Consensus       345 ~  345 (346)
                      |
T Consensus       409 e  409 (409)
T 3hrp_A          409 E  409 (409)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.60  E-value=4.1e-13  Score=124.26  Aligned_cols=237  Identities=11%  Similarity=0.012  Sum_probs=146.4

Q ss_pred             ecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeee----eccCCceEEEEeecCCCCcEEEEec----CCe
Q 019059           73 SCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL----DAHVGKINCVLWWSSGRHDKLVSID----EEN  144 (346)
Q Consensus        73 ~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~----d~~  144 (346)
                      .+|+|++++.....++.. .-.+|..+..     ....+.+...    .+|...+..++|||||+.++++...    +..
T Consensus        75 p~~dG~~~~~~~~~~~~~-~~~l~~~~~~-----~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~  148 (695)
T 2bkl_A           75 PSRRNGRFFYVRTHKDKE-KAILYWRQGE-----SGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAV  148 (695)
T ss_dssp             CEEETTEEEEEEECTTCS-SCEEEEEEST-----TSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCE
T ss_pred             CEEECCEEEEEEEcCCCe-EEEEEEEcCC-----CCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEE
Confidence            358898888775433321 3445544310     1111222111    2355578999999999975555433    368


Q ss_pred             EEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCe-------------EEEEEccCCCcc--ceeec-
Q 019059          145 IFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESS-------------VQFWDLRSMGKT--NSIEH-  208 (346)
Q Consensus       145 i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-------------i~i~d~~~~~~~--~~~~~-  208 (346)
                      |++||+.+++.....   .....  ....++|+||++.|+.++.+..             |++|++.+++..  ..+.. 
T Consensus       149 i~v~dl~tg~~~~~~---~~~~~--~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~  223 (695)
T 2bkl_A          149 LHVIDVDSGEWSKVD---VIEGG--KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERT  223 (695)
T ss_dssp             EEEEETTTCCBCSSC---CBSCC--TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCC
T ss_pred             EEEEECCCCCCcCCc---ccCcc--cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecC
Confidence            999999987643111   11110  1267899999999999987665             999999987632  22221 


Q ss_pred             c--c-eeEEEeCCCCCcEEEEecCC-C--eEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEec---CCCeEEE
Q 019059          209 A--H-VRNVDYDTKKKHLLVTAADE-S--GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG---TDSTVNL  279 (346)
Q Consensus       209 ~--~-v~~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~---~d~~i~i  279 (346)
                      .  . +..+.|+|+|++++++...+ +  .|+++|... . ....+..+...+....+ +++ .+++...   .++.|.+
T Consensus       224 ~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~-~-~~~~l~~~~~~~~~~~~-~~g-~l~~~s~~~~~~~~l~~  299 (695)
T 2bkl_A          224 GDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGE-K-DFRLLVKGVGAKYEVHA-WKD-RFYVLTDEGAPRQRVFE  299 (695)
T ss_dssp             CCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTC-S-SCEEEEECSSCCEEEEE-ETT-EEEEEECTTCTTCEEEE
T ss_pred             CCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCC-C-ceEEeecCCCceEEEEe-cCC-cEEEEECCCCCCCEEEE
Confidence            1  2 88999999998544444333 2  566665433 2 35555556666666666 777 5444444   2578999


Q ss_pred             EecCCCCCCCCCcccccCCcccccccc--ccccc-cc-cceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          280 WLVSTSNHDELPSESLVESPNQRANSL--LNSYS-DY-EDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       280 wd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~-~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      ||+..                   +..  ...+. .+ ...+.+++|+ ++ .++++...|+..+||.++
T Consensus       300 ~d~~~-------------------~~~~~~~~l~~~~~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~  348 (695)
T 2bkl_A          300 VDPAK-------------------PARASWKEIVPEDSSASLLSVSIV-GG-HLSLEYLKDATSEVRVAT  348 (695)
T ss_dssp             EBTTB-------------------CSGGGCEEEECCCSSCEEEEEEEE-TT-EEEEEEEETTEEEEEEEE
T ss_pred             EeCCC-------------------CCccCCeEEecCCCCCeEEEEEEE-CC-EEEEEEEECCEEEEEEEe
Confidence            99976                   321  12222 22 4457888888 44 489999999998888653

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.59  E-value=1.5e-11  Score=101.56  Aligned_cols=237  Identities=6%  Similarity=-0.043  Sum_probs=158.1

Q ss_pred             cccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCC
Q 019059           64 HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEE  143 (346)
Q Consensus        64 h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~  143 (346)
                      ....+.++++.+++...++.    ..++.|.+|+...        .... ..+..+...+.++++.+++. ++++...++
T Consensus        18 ~~~~p~~i~~d~~g~l~v~~----~~~~~v~~~~~~~--------~~~~-~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~   83 (300)
T 2qc5_A           18 PDSGPYGITSSEDGKVWFTQ----HKANKISSLDQSG--------RIKE-FEVPTPDAKVMCLIVSSLGD-IWFTENGAN   83 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEE----TTTTEEEEECTTS--------CEEE-EECSSTTCCEEEEEECTTSC-EEEEETTTT
T ss_pred             CCCCcceeeECCCCCEEEEc----CCCCeEEEECCCC--------ceEE-EECCCCCCcceeEEECCCCC-EEEEecCCC
Confidence            34578899999988766553    4567899998641        1111 12223346789999999887 455544578


Q ss_pred             eEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccce-eec-cc-eeEEEeCCCC
Q 019059          144 NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNS-IEH-AH-VRNVDYDTKK  220 (346)
Q Consensus       144 ~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~-~~-v~~~~~~~~~  220 (346)
                      .|..+|.. ++. ......   .....+.++++.+++..+++...++.|..+|.. ++.... +.. .. +.++++++++
T Consensus        84 ~v~~~d~~-g~~-~~~~~~---~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g  157 (300)
T 2qc5_A           84 KIGKLSKK-GGF-TEYPLP---QPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDN  157 (300)
T ss_dssp             EEEEECTT-SCE-EEEECS---STTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTS
T ss_pred             eEEEECCC-CCe-EEecCC---CCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCC
Confidence            89999977 332 222211   112468899999988766666567899999987 543322 111 12 9999999999


Q ss_pred             CcEEEEecCCCeEEEEEcccCCccee-eecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCc
Q 019059          221 KHLLVTAADESGIHLWDLRMLKAPIQ-ELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESP  299 (346)
Q Consensus       221 ~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  299 (346)
                      . ++++...++.|..+|..  ..... ....+...+..+++++++ .+.++....+.|.+||...               
T Consensus       158 ~-l~v~~~~~~~i~~~~~~--g~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~~g---------------  218 (300)
T 2qc5_A          158 A-LWFTENQNNSIGRITNT--GKLEEYPLPTNAAAPVGITSGNDG-ALWFVEIMGNKIGRITTTG---------------  218 (300)
T ss_dssp             S-EEEEETTTTEEEEECTT--CCEEEEECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECTTC---------------
T ss_pred             C-EEEEecCCCeEEEECCC--CcEEEeeCCCCCCCcceEEECCCC-CEEEEccCCCEEEEEcCCC---------------
Confidence            8 77777767899999983  32222 122344568899999998 7777776677899999842               


Q ss_pred             ccccccccc-ccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          300 NQRANSLLN-SYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       300 ~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                           +... .+..+...+.++++++++. ++++...++.|..|+.+
T Consensus       219 -----~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~~  259 (300)
T 2qc5_A          219 -----EISEYDIPTPNARPHAITAGKNSE-IWFTEWGANQIGRITND  259 (300)
T ss_dssp             -----CEEEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT
T ss_pred             -----cEEEEECCCCCCCceEEEECCCCC-EEEeccCCCeEEEECCC
Confidence                 2211 1223345588999999986 77776667888888753

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.58  E-value=7.1e-13  Score=122.51  Aligned_cols=246  Identities=10%  Similarity=0.084  Sum_probs=154.4

Q ss_pred             cccceEEeeecCCCCceEEEEeecCC-cceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecC
Q 019059           64 HPNEIWDLSSCPFDQRIFSTVFSTGE-SYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDE  142 (346)
Q Consensus        64 h~~~v~~~~~~~~~~~l~~~~~~~~~-d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d  142 (346)
                      |...+..++||||++.++.+...+|. ...|++||++         +++.+.. ..+......++|+ |++.++++...+
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~---------tg~~~~~-~~~~~k~~~~~Ws-Dg~~l~y~~~~~  195 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVE---------SKQPLET-PLKDVKFSGISWL-GNEGFFYSSYDK  195 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETT---------TCSEEEE-EEEEEESCCCEEE-TTTEEEEEESSC
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECC---------CCCCCcc-ccCCceeccEEEe-CCCEEEEEEecC
Confidence            45578899999999998876644443 4789999998         4443322 1111123577899 999755554321


Q ss_pred             ------------CeEEEEEcCCCCCCceeeecccCC-CceeeEEEEeCCCCCcEEEEec----CCeEEEEEccCCC-ccc
Q 019059          143 ------------ENIFLWSLDCSNKNAQVQSKQSSG-MLHYLSGGAWDPHDVNAVAATC----ESSVQFWDLRSMG-KTN  204 (346)
Q Consensus       143 ------------~~i~vwd~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~-~~~  204 (346)
                                  ..|++|++.+........... .. +.....++.|+||+++|+....    +..|+++|+.++. ...
T Consensus       196 ~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~-~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~  274 (693)
T 3iuj_A          196 PDGSELSARTDQHKVYFHRLGTAQEDDRLVFGA-IPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLL  274 (693)
T ss_dssp             CC-------CCCCEEEEEETTSCGGGCEEEESC-SGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCE
T ss_pred             cccccccccCCCcEEEEEECCCCcccceEEEec-CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceE
Confidence                        349999998765333333222 22 2334678899999998876543    3589999998764 334


Q ss_pred             eeeccc--eeEEEeCCCCCcEEEEecCC---CeEEEEEcccCCc-ceeeecCCCcceEEEEeCCCCCcEEEEe-cCCC--
Q 019059          205 SIEHAH--VRNVDYDTKKKHLLVTAADE---SGIHLWDLRMLKA-PIQELPGHTHWTWAVCCNPEYDGFILSA-GTDS--  275 (346)
Q Consensus       205 ~~~~~~--v~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~-~~~~~~~~~~~v~~v~~~~~~~~~l~s~-~~d~--  275 (346)
                      .+....  .... +++++..+++....+   +.|..+|+..... ..+.+..|...+.  .|++++ ..|+.. ..++  
T Consensus       275 ~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g-~~lv~~~~~~g~~  350 (693)
T 3iuj_A          275 TVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGS-GYLFAEYMVDATA  350 (693)
T ss_dssp             EEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEET-TEEEEEEEETTEE
T ss_pred             EEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEEC-CEEEEEEEECCee
Confidence            444222  3343 666666566666554   6799999886331 1355666666665  889998 555544 4455  


Q ss_pred             eEEEEecCCCCCCCCCcccccCCccccccccccccc-cccceeeEEEeCCCCCcEEEEeecC---CeEEEeeec
Q 019059          276 TVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYS-DYEDSVYGLAWSSREPWIFASLSYD---GRVRNHMLE  345 (346)
Q Consensus       276 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d---~~v~vw~~~  345 (346)
                      .|++||+..                   .. ...+. .....+..+.++|+++.++++.+..   +.++.||++
T Consensus       351 ~l~~~d~~g-------------------~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~  404 (693)
T 3iuj_A          351 RVEQFDYEG-------------------KR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPK  404 (693)
T ss_dssp             EEEEECTTS-------------------CE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred             EEEEEECCC-------------------Ce-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECC
Confidence            688888875                   22 22222 2344577888898887555554421   678888864

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.57  E-value=2.8e-12  Score=104.39  Aligned_cols=234  Identities=12%  Similarity=-0.037  Sum_probs=149.9

Q ss_pred             eeccCCCCcceEEE-eecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEec
Q 019059           20 SDVKADTDHTSFLT-GTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQI   98 (346)
Q Consensus        20 ~~~~~~~~~~~~~~-g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~   98 (346)
                      ..+..++++. +.+ +.   ..++.|..++...  .... .....+...+.++++.+++. +.++.   . ++.|.+|+.
T Consensus        27 ~~i~~~~~g~-l~v~~~---~~~~~i~~~~~~~--~~~~-~~~~~~~~~p~~i~~~~~g~-l~v~~---~-~~~i~~~d~   94 (270)
T 1rwi_B           27 SGVAVDSAGN-VYVTSE---GMYGRVVKLATGS--TGTT-VLPFNGLYQPQGLAVDGAGT-VYVTD---F-NNRVVTLAA   94 (270)
T ss_dssp             EEEEECTTCC-EEEEEC---SSSCEEEEECC-------E-ECCCCSCCSCCCEEECTTCC-EEEEE---T-TTEEEEECT
T ss_pred             cceEECCCCC-EEEEcc---CCCCcEEEecCCC--cccc-eEeeCCcCCcceeEECCCCC-EEEEc---C-CCEEEEEeC
Confidence            3445556655 443 32   2346676664322  2111 11123335678999999887 44432   3 778999997


Q ss_pred             CcccCCCCCccceeeeeee-ccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeC
Q 019059           99 PELYGQLNSPQLERIAALD-AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWD  177 (346)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~  177 (346)
                      ..          .....+. .....+.++++.+++. ++++...++.|.+|+..+...  ....   ......+.+++++
T Consensus        95 ~~----------~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~--~~~~---~~~~~~p~~i~~~  158 (270)
T 1rwi_B           95 GS----------NNQTVLPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQ--TVLP---FTGLNDPDGVAVD  158 (270)
T ss_dssp             TC----------SCCEECCCCSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCSC--EECC---CCSCCSCCCEEEC
T ss_pred             CC----------ceEeeeecCCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCcee--Eeec---cccCCCceeEEEe
Confidence            61          1122222 2235688999999987 455555678999997654321  1111   1122357889999


Q ss_pred             CCCCcEEEEecCCeEEEEEccCCCccceeecc-c-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcce
Q 019059          178 PHDVNAVAATCESSVQFWDLRSMGKTNSIEHA-H-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWT  255 (346)
Q Consensus       178 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v  255 (346)
                      ++++.+++...++.|.+||............. . +.++++++++. ++++...++.|.+||... .........+...+
T Consensus       159 ~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~~-~~~~~~~~~~~~~p  236 (270)
T 1rwi_B          159 NSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGT-VYVTEHNTNQVVKLLAGS-TTSTVLPFTGLNTP  236 (270)
T ss_dssp             TTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCC-EEEEETTTSCEEEECTTC-SCCEECCCCSCSCE
T ss_pred             CCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCC-EEEEECCCCcEEEEcCCC-CcceeeccCCCCCc
Confidence            99985555556789999998876543322222 2 89999999996 888877788999999865 32222222233578


Q ss_pred             EEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          256 WAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       256 ~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      .+++++++| .++++...++.|+++++..
T Consensus       237 ~~i~~~~~g-~l~v~~~~~~~v~~~~~~~  264 (270)
T 1rwi_B          237 LAVAVDSDR-TVYVADRGNDRVVKLTSLE  264 (270)
T ss_dssp             EEEEECTTC-CEEEEEGGGTEEEEECCCG
T ss_pred             eeEEECCCC-CEEEEECCCCEEEEEcCCC
Confidence            999999999 8888888899999999986

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.57  E-value=1.9e-11  Score=104.10  Aligned_cols=274  Identities=9%  Similarity=-0.093  Sum_probs=164.1

Q ss_pred             CCcceEEEeec-ccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEe------ecCCcceEEEEec
Q 019059           26 TDHTSFLTGTL-SLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVF------STGESYGAAIWQI   98 (346)
Q Consensus        26 ~~~~~~~~g~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~------~~~~d~~i~vw~~   98 (346)
                      ++..++.+... .......+.+++....  .+. ..+..-..+  .++++|++++++++..      .+..++.|.+||.
T Consensus        30 ~~~~~~yv~~~~~~~~~~~v~v~D~~t~--~~~-~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~  104 (373)
T 2mad_H           30 ADGRRSYINLPAHHSAIIQQWVLDAGSG--SIL-GHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP  104 (373)
T ss_pred             CCCCEEEEeCCcccCCccEEEEEECCCC--eEE-EEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence            45555555432 1111016677766543  232 222222222  8999999999988731      0123678999998


Q ss_pred             CcccCCCCCccceeeeeeecc-------CCceEEEEeecCCCCcEEEEec-CCeEEEEEcCCCCCCceeeecccCCCcee
Q 019059           99 PELYGQLNSPQLERIAALDAH-------VGKINCVLWWSSGRHDKLVSID-EENIFLWSLDCSNKNAQVQSKQSSGMLHY  170 (346)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  170 (346)
                      .         +.+.+.++...       ......+.|+|||++++++... ++.|.++| .+++....+..  ..     
T Consensus       105 ~---------t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~--~~-----  167 (373)
T 2mad_H          105 V---------TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS--SP-----  167 (373)
T ss_pred             C---------CCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC--CC-----
Confidence            7         55555554321       1234588999999975555533 58899999 87653322011  11     


Q ss_pred             eEEEEeCCCCCc-EEEEecCCeEEEEEccCCCccceee-----ccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccC
Q 019059          171 LSGGAWDPHDVN-AVAATCESSVQFWDLRSMGKTNSIE-----HAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRML  241 (346)
Q Consensus       171 v~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~-----~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  241 (346)
                       .++.+.|+++. +++.+.||.+.++|. +++......     .+.   .....+.+++..++++. .++.+.+.|+...
T Consensus       168 -~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~  244 (373)
T 2mad_H          168 -TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAA  244 (373)
T ss_pred             -ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEc-CCceEEEEeccCC
Confidence             12344555543 455667999999999 776553221     111   23456666665344444 6789999998642


Q ss_pred             Cc-ceeeecC----------CCcceEEEEeCCCCCcEEEEecC----------CCeEEEEecCCCCCCCCCcccccCCcc
Q 019059          242 KA-PIQELPG----------HTHWTWAVCCNPEYDGFILSAGT----------DSTVNLWLVSTSNHDELPSESLVESPN  300 (346)
Q Consensus       242 ~~-~~~~~~~----------~~~~v~~v~~~~~~~~~l~s~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~  300 (346)
                      .. .+..+..          .......+.++|++ ..++.+..          .+.|.++|+.+                
T Consensus       245 ~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~-~~lyV~~~~~~~~~~~~~~~~V~VID~~t----------------  307 (373)
T 2mad_H          245 GATNKAPIDALSGGRKADTWRPGGWQQVAYLKSS-DGIYLLTSEQSAWKLHAAAKEVTSVTGLV----------------  307 (373)
T ss_pred             cceEeeeeeecCCcccccceecCceEeEEECCCC-CEEEEEeccCCcccccCCCCeEEEEECCC----------------
Confidence            21 1122211          11234447889998 55555432          35799999998                


Q ss_pred             ccccccccccccccceeeEEEeCCCCCcEEEEee-cCCeEEEeeec
Q 019059          301 QRANSLLNSYSDYEDSVYGLAWSSREPWIFASLS-YDGRVRNHMLE  345 (346)
Q Consensus       301 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~v~vw~~~  345 (346)
                         .+.+..+... ....+++|+|+++.+++++. .++.|.++|++
T Consensus       308 ---~~vv~~i~~g-~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~  349 (373)
T 2mad_H          308 ---GQTSSQISLG-HDVDAISVAQDGGPDLYALSAGTEVLHIYDAG  349 (373)
T ss_pred             ---CEEEEEEECC-CCcCeEEECCCCCeEEEEEcCCCCeEEEEECC
Confidence               7777776432 24799999999974555555 58999999975

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.55  E-value=3.4e-12  Score=105.97  Aligned_cols=235  Identities=7%  Similarity=-0.075  Sum_probs=147.5

Q ss_pred             eeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEe
Q 019059           61 LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI  140 (346)
Q Consensus        61 ~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  140 (346)
                      +...........|+|+++.|+.+   +..++.|..|+..          ++ ...+..+...+..++++++|+ ++++..
T Consensus        40 l~~~~~~~egp~~~~~g~~l~~~---d~~~~~i~~~~~~----------g~-~~~~~~~~~~~~gl~~d~dG~-l~v~~~  104 (305)
T 3dr2_A           40 LYDQATWSEGPAWWEAQRTLVWS---DLVGRRVLGWRED----------GT-VDVLLDATAFTNGNAVDAQQR-LVHCEH  104 (305)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEE---ETTTTEEEEEETT----------SC-EEEEEESCSCEEEEEECTTSC-EEEEET
T ss_pred             EecCCcCccCCeEeCCCCEEEEE---ECCCCEEEEEeCC----------CC-EEEEeCCCCccceeeECCCCC-EEEEEC
Confidence            34455567789999999866665   3567789999864          12 234445567789999999998 344444


Q ss_pred             cCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEE----Eec-------------CCeEEEEEccCCCcc
Q 019059          141 DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVA----ATC-------------ESSVQFWDLRSMGKT  203 (346)
Q Consensus       141 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~----~~~-------------d~~i~i~d~~~~~~~  203 (346)
                      .++.|.+|+.+ ++ ...+...........+..+++.|+|..+++    +..             .+.|..+|..+++..
T Consensus       105 ~~~~v~~~~~~-g~-~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~  182 (305)
T 3dr2_A          105 GRRAITRSDAD-GQ-AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQ  182 (305)
T ss_dssp             TTTEEEEECTT-SC-EEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCE
T ss_pred             CCCEEEEECCC-CC-EEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEE
Confidence            45789999975 33 222221111111234678999999987665    221             256888887766644


Q ss_pred             ceeeccc-eeEEEeCCCCCcEEEEecCC------CeEEEEEcccCCc-ceeee-cCCCcceEEEEeCCCCCcEEEEecCC
Q 019059          204 NSIEHAH-VRNVDYDTKKKHLLVTAADE------SGIHLWDLRMLKA-PIQEL-PGHTHWTWAVCCNPEYDGFILSAGTD  274 (346)
Q Consensus       204 ~~~~~~~-v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~-~~~~~-~~~~~~v~~v~~~~~~~~~l~s~~~d  274 (346)
                      ... ... .+.++|+|++. .|+.+...      +.|.+||+..... ....+ .........++++++| ++.+ ++.+
T Consensus       183 ~~~-~~~~p~gl~~spdg~-~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G-~lwv-~~~~  258 (305)
T 3dr2_A          183 RMA-DLDHPNGLAFSPDEQ-TLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGG-WLWS-SSGT  258 (305)
T ss_dssp             EEE-EESSEEEEEECTTSS-EEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTS-CEEE-CCSS
T ss_pred             EEe-cCCCCcceEEcCCCC-EEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCC-CEEE-ecCC
Confidence            333 122 88999999998 45544443      7899999874220 01111 1123445678899999 6444 4444


Q ss_pred             CeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeE
Q 019059          275 STVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRV  339 (346)
Q Consensus       275 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v  339 (346)
                       .|.+|+..                    ++.+..+..+. .+.+++|+|+++ .|..++.++..
T Consensus       259 -gv~~~~~~--------------------g~~~~~~~~~~-~~~~~~f~~d~~-~L~it~~~~l~  300 (305)
T 3dr2_A          259 -GVCVFDSD--------------------GQLLGHIPTPG-TASNCTFDQAQQ-RLFITGGPCLW  300 (305)
T ss_dssp             -EEEEECTT--------------------SCEEEEEECSS-CCCEEEECTTSC-EEEEEETTEEE
T ss_pred             -cEEEECCC--------------------CCEEEEEECCC-ceeEEEEeCCCC-EEEEEcCCeEE
Confidence             49999985                    35555554444 488999999887 45555545433

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.53  E-value=1.5e-12  Score=109.20  Aligned_cols=212  Identities=8%  Similarity=-0.015  Sum_probs=142.9

Q ss_pred             CcceEEEEecCcccCCCCCccceeeeeee------ccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeec
Q 019059           89 ESYGAAIWQIPELYGQLNSPQLERIAALD------AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK  162 (346)
Q Consensus        89 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~  162 (346)
                      .++.|.++|.+         +.+....+.      ........+.+.  +..++++...++.|.+||..+++....+.. 
T Consensus        15 ~~~~l~~~d~~---------t~~~~~~i~~~~n~~~lg~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-   82 (328)
T 3dsm_A           15 SNATLSYYDPA---------TCEVENEVFYRANGFKLGDVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVGRITG-   82 (328)
T ss_dssp             CCBEEEEEETT---------TTEEECSHHHHHHSSCCBSCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-
T ss_pred             CCceEEEEECC---------CCEEhhhhHhhhcCcccCccceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEEEcCC-
Confidence            47899999987         444444331      112345677764  344566666689999999998765444421 


Q ss_pred             ccCCCceeeEEEEeCCCCCcEEEEe-cCCeEEEEEccCCCccceeecc-------ceeEEEeCCCCCcEEEEec-CCCeE
Q 019059          163 QSSGMLHYLSGGAWDPHDVNAVAAT-CESSVQFWDLRSMGKTNSIEHA-------HVRNVDYDTKKKHLLVTAA-DESGI  233 (346)
Q Consensus       163 ~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~-------~v~~~~~~~~~~~~l~~~~-~dg~i  233 (346)
                           ......+++++++ .++++. .++.|.+||+.+++....+..+       .+..+++ .++. ++++.. .++.|
T Consensus        83 -----~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~-lyv~~~~~~~~v  154 (328)
T 3dsm_A           83 -----FTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKY-VYVNCWSYQNRI  154 (328)
T ss_dssp             -----CSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTE-EEEEECTTCCEE
T ss_pred             -----CCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCE-EEEEcCCCCCEE
Confidence                 1267889998888 555555 7899999999998866555422       2556777 3443 555554 48899


Q ss_pred             EEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCC----------CeEEEEecCCCCCCCCCcccccCCccccc
Q 019059          234 HLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTD----------STVNLWLVSTSNHDELPSESLVESPNQRA  303 (346)
Q Consensus       234 ~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  303 (346)
                      .++|+.+ .+.+..+.. ......+.++|+| ++++++..+          +.|.++|..+                   
T Consensus       155 ~viD~~t-~~~~~~i~~-g~~p~~i~~~~dG-~l~v~~~~~~~~~~~~~~~~~v~~id~~t-------------------  212 (328)
T 3dsm_A          155 LKIDTET-DKVVDELTI-GIQPTSLVMDKYN-KMWTITDGGYEGSPYGYEAPSLYRIDAET-------------------  212 (328)
T ss_dssp             EEEETTT-TEEEEEEEC-SSCBCCCEECTTS-EEEEEBCCBCTTCSSCBCCCEEEEEETTT-------------------
T ss_pred             EEEECCC-CeEEEEEEc-CCCccceEEcCCC-CEEEEECCCccCCccccCCceEEEEECCC-------------------
Confidence            9999987 445555553 3345788999999 777766654          7899999987                   


Q ss_pred             cccccccccc-cceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          304 NSLLNSYSDY-EDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       304 ~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      ++....+... ...+..++|+|+++.+++ +..  .|.+||++
T Consensus       213 ~~v~~~~~~~~g~~p~~la~~~d~~~lyv-~~~--~v~~~d~~  252 (328)
T 3dsm_A          213 FTVEKQFKFKLGDWPSEVQLNGTRDTLYW-INN--DIWRMPVE  252 (328)
T ss_dssp             TEEEEEEECCTTCCCEEEEECTTSCEEEE-ESS--SEEEEETT
T ss_pred             CeEEEEEecCCCCCceeEEEecCCCEEEE-Ecc--EEEEEECC
Confidence            5555444321 235789999999884444 332  78888864

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.53  E-value=6.7e-12  Score=105.76  Aligned_cols=278  Identities=10%  Similarity=-0.014  Sum_probs=171.1

Q ss_pred             cCCCCcceEEEeecc-cCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEe------ecCCcceEEE
Q 019059           23 KADTDHTSFLTGTLS-LKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVF------STGESYGAAI   95 (346)
Q Consensus        23 ~~~~~~~~~~~g~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~------~~~~d~~i~v   95 (346)
                      ...|+..++.+.... ....+.+.+++....  .+. ..+..-..+ . ++++|++++++++..      .|..++.|.+
T Consensus        39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~--~v~-~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsv  113 (386)
T 3sjl_D           39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAG--RVI-GMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEV  113 (386)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTT--EEE-EEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred             ccCCCCCEEEEEcCcccCCCCEEEEEECCCC--eEE-EEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEE
Confidence            346788888887653 223467888766543  333 222222223 3 999999999887631      0123578999


Q ss_pred             EecCcccCCCCCccceeeeeeeccC-------CceEEEEeecCCCCcEEEEe-cCCeEEEEEcCCCCCCceeeecccCCC
Q 019059           96 WQIPELYGQLNSPQLERIAALDAHV-------GKINCVLWWSSGRHDKLVSI-DEENIFLWSLDCSNKNAQVQSKQSSGM  167 (346)
Q Consensus        96 w~~~~~~~~~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~~~~~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~  167 (346)
                      ||..         +.+.+.++....       .....+.++|||++++++.. .++.|.++|+.+.+....+...   + 
T Consensus       114 iD~~---------t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~---g-  180 (386)
T 3sjl_D          114 FDPV---------TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP---D-  180 (386)
T ss_dssp             ECTT---------TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC---S-
T ss_pred             EECC---------CCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC---C-
Confidence            9998         667776664321       24567999999997555543 3789999999977644444221   1 


Q ss_pred             ceeeEEEEeCCCCCcEEEEecCCeEEEEEccC-CCccce----eecc--c-eeEEEeC-CCCCcEEEEecCCCeEEEEEc
Q 019059          168 LHYLSGGAWDPHDVNAVAATCESSVQFWDLRS-MGKTNS----IEHA--H-VRNVDYD-TKKKHLLVTAADESGIHLWDL  238 (346)
Q Consensus       168 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~----~~~~--~-v~~~~~~-~~~~~~l~~~~~dg~i~i~d~  238 (346)
                         + ...+....+.+++.+.||.+.+.++.+ ++....    +...  . ....+|. ++|+ +++ .+.+|.|++.|+
T Consensus       181 ---~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~-~~~-vs~~g~V~v~d~  254 (386)
T 3sjl_D          181 ---C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGR-LVW-PTYTGKIHQIDL  254 (386)
T ss_dssp             ---E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTE-EEE-EBTTSEEEEEEC
T ss_pred             ---c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCc-EEE-EeCCCEEEEEEC
Confidence               1 112222334566777788888888875 443211    1111  1 2234553 6775 444 445799999998


Q ss_pred             ccCCc-ceeeec---------C-CCcceEEEEeCCCCCcEEEEecC----------CCeEEEEecCCCCCCCCCcccccC
Q 019059          239 RMLKA-PIQELP---------G-HTHWTWAVCCNPEYDGFILSAGT----------DSTVNLWLVSTSNHDELPSESLVE  297 (346)
Q Consensus       239 ~~~~~-~~~~~~---------~-~~~~v~~v~~~~~~~~~l~s~~~----------d~~i~iwd~~~~~~~~~~~~~~~~  297 (346)
                      ..... .+..+.         + .......++++|++ ..++....          .+.|.+.|+.+             
T Consensus       255 ~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~-~~lyV~~~~~~~~~hk~~~~~V~viD~~t-------------  320 (386)
T 3sjl_D          255 SSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRAL-DRIYLLVDQRDEWRHKTASRFVVVLDAKT-------------  320 (386)
T ss_dssp             TTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTT-TEEEEEEEECCTTCTTSCEEEEEEEETTT-------------
T ss_pred             CCCcceeecceeccccccccccccCCCcceeeECCCC-CeEEEEeccccccccCCCCCEEEEEECCC-------------
Confidence            75321 122221         0 11233457788998 55555432          25799999998             


Q ss_pred             CccccccccccccccccceeeEEEeCCCCC-cEEEEeecCCeEEEeeec
Q 019059          298 SPNQRANSLLNSYSDYEDSVYGLAWSSREP-WIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~s~~~d~~v~vw~~~  345 (346)
                            .+.+..+..- ..+++++++|+++ .++++...++.|.++|..
T Consensus       321 ------~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~  362 (386)
T 3sjl_D          321 ------GERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAE  362 (386)
T ss_dssp             ------CCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETT
T ss_pred             ------CeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECC
Confidence                  7777776543 3588999999996 445556679999999974

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.51  E-value=5.2e-12  Score=117.76  Aligned_cols=241  Identities=10%  Similarity=0.030  Sum_probs=144.0

Q ss_pred             ecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeee---e-eccCCceEEEEeecCCCCcEEEEecCC----e
Q 019059           73 SCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAA---L-DAHVGKINCVLWWSSGRHDKLVSIDEE----N  144 (346)
Q Consensus        73 ~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~---~-~~~~~~i~~~~~~~~~~~~~~~~~~d~----~  144 (346)
                      .+|+|++++.....++.. .-.+|..+....  .....+.+..   + ..|...+..++|||||++++++...+|    .
T Consensus       114 p~pdG~~~~~~~~~~~~~-~~~l~~~~~~~~--~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~  190 (741)
T 1yr2_A          114 PQRRGASVFYSWNSGLMN-QSQLLVRPADAP--VGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRT  190 (741)
T ss_dssp             CEEETTEEEEEEECSSCS-SCEEEEEETTSC--TTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEE
T ss_pred             CEEECCEEEEEEEcCCCe-EEEEEEEcCCcc--CCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEE
Confidence            358999988876433322 345665541100  0011122111   1 223346889999999997555554433    5


Q ss_pred             EEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCe--------------EEEEEccCCCcc--ceee-
Q 019059          145 IFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESS--------------VQFWDLRSMGKT--NSIE-  207 (346)
Q Consensus       145 i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~--------------i~i~d~~~~~~~--~~~~-  207 (346)
                      |++||+.+++.......      ...+..++|+|| +.|+.+..+..              |++|++.++...  ..+. 
T Consensus       191 i~v~dl~tg~~~~~~~~------~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~  263 (741)
T 1yr2_A          191 VKFVGVADGKPLADELK------WVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFAT  263 (741)
T ss_dssp             EEEEETTTCCEEEEEEE------EEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECC
T ss_pred             EEEEECCCCCCCCccCC------CceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEecc
Confidence            99999998764221111      112367899999 88888876543              899999877632  1222 


Q ss_pred             ccc---eeEEEeCCCCCcEEEEecC----CCeEEEEEcccCCcc-eeeecCCCcceEEEEeCCCCCcEEEEecC----CC
Q 019059          208 HAH---VRNVDYDTKKKHLLVTAAD----ESGIHLWDLRMLKAP-IQELPGHTHWTWAVCCNPEYDGFILSAGT----DS  275 (346)
Q Consensus       208 ~~~---v~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~-~~~~~~~~~~v~~v~~~~~~~~~l~s~~~----d~  275 (346)
                      ..+   +..+.|+|+|++++++...    ...|++||+...... ...+..+...+.... +|+| ..|+..+.    ++
T Consensus       264 ~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg-~~l~~~s~~~~~~~  341 (741)
T 1yr2_A          264 PELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVG-DQLWFVSGDGAPLK  341 (741)
T ss_dssp             TTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEET-TEEEEEECTTCTTC
T ss_pred             CCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccC-CEEEEEECCCCCCC
Confidence            111   7899999999844444432    348999999863212 455655555555553 4888 66665554    34


Q ss_pred             eEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059          276 TVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       276 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~  344 (346)
                      .|.+||+....                 .+....+..+...+.+++|+ ++ .++++...|+..+||.+
T Consensus       342 ~l~~~d~~~~~-----------------~~~~~l~~~~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~  391 (741)
T 1yr2_A          342 KIVRVDLSGST-----------------PRFDTVVPESKDNLESVGIA-GN-RLFASYIHDAKSQVLAF  391 (741)
T ss_dssp             EEEEEECSSSS-----------------CEEEEEECCCSSEEEEEEEE-BT-EEEEEEEETTEEEEEEE
T ss_pred             EEEEEeCCCCc-----------------cccEEEecCCCCeEEEEEEE-CC-EEEEEEEECCEEEEEEE
Confidence            69999987610                 01222233444557778887 34 58899999998888755

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.48  E-value=1.1e-11  Score=106.17  Aligned_cols=275  Identities=8%  Similarity=-0.074  Sum_probs=167.1

Q ss_pred             CCcceEEEeecccCCC-CeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEee------cCCcceEEEEec
Q 019059           26 TDHTSFLTGTLSLKEE-NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFS------TGESYGAAIWQI   98 (346)
Q Consensus        26 ~~~~~~~~g~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~------~~~d~~i~vw~~   98 (346)
                      ++..++.+........ +.+.+++....  .+....-.+ ..+  .++++|+++.++++...      |..++.|.++|.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~--~vv~~I~vG-~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~  156 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTG--RILGMTDGG-FLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDP  156 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTT--EEEEEEEEC-SSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCC--EEEEEEECC-CCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEEC
Confidence            4566676665322111 67888876653  233222222 233  89999999999887421      124668999998


Q ss_pred             CcccCCCCCccceeeeeeecc-------CCceEEEEeecCCCCcEEEEec-CCeEEEEEcCCCCCCceeeecccCCCcee
Q 019059           99 PELYGQLNSPQLERIAALDAH-------VGKINCVLWWSSGRHDKLVSID-EENIFLWSLDCSNKNAQVQSKQSSGMLHY  170 (346)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  170 (346)
                      .         +.+.+.++...       ......+.++|||++++++... ++.|.+.|+.+.+....+....       
T Consensus       157 ~---------t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g-------  220 (426)
T 3c75_H          157 V---------TFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD-------  220 (426)
T ss_dssp             T---------TCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS-------
T ss_pred             C---------CCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC-------
Confidence            8         66666666421       1234678999999975555433 6899999999766443332211       


Q ss_pred             eEEEEeCCCC-CcEEEEecCCeEEEEEccCCCccc----eeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCC
Q 019059          171 LSGGAWDPHD-VNAVAATCESSVQFWDLRSMGKTN----SIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK  242 (346)
Q Consensus       171 v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~----~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  242 (346)
                      .  ....|++ ..+++.+.||.+.+.++.+++...    .+..+.   ...+.+.+++. .++.....+.+.+.|.....
T Consensus       221 ~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~-~~~~~s~~g~V~ViD~~~~~  297 (426)
T 3c75_H          221 C--YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSG-RLVWPTYTGKIFQADLTAEG  297 (426)
T ss_dssp             E--EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTC-EEEEEBTTSEEEEEEECSSC
T ss_pred             c--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCC-EEEEEeCCCcEEEEeccCCc
Confidence            1  1223333 344555677888777875554331    111111   23456788887 44444567899999986422


Q ss_pred             c-ceeeecC----------CCcceEEEEeCCCCCcEEEEecC----------CCeEEEEecCCCCCCCCCcccccCCccc
Q 019059          243 A-PIQELPG----------HTHWTWAVCCNPEYDGFILSAGT----------DSTVNLWLVSTSNHDELPSESLVESPNQ  301 (346)
Q Consensus       243 ~-~~~~~~~----------~~~~v~~v~~~~~~~~~l~s~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~  301 (346)
                      . .+..+..          .......++++|++ ..+++...          ++.|.+.|+.+                 
T Consensus       298 ~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg-~rlyVa~~~~~~gthk~~s~~VsVID~~T-----------------  359 (426)
T 3c75_H          298 ATFRAPIEALTEAERADDWRPGGWQQTAYHRQS-DRIYLLVDQRDEWKHKAASRFVVVLNAET-----------------  359 (426)
T ss_dssp             EEECCCEESSCTTTGGGTEEECSSSCEEEEGGG-TEEEEEEEECCTTCTTSCEEEEEEEETTT-----------------
T ss_pred             eEEeeeeeeccccccccccccCCceeeEEcCCC-CEEEEEecccccccccCCCCEEEEEECCC-----------------
Confidence            1 0111110          01122236899998 55544421          35799999998                 


Q ss_pred             cccccccccccccceeeEEEeCCCCC-cEEEEeecCCeEEEeeec
Q 019059          302 RANSLLNSYSDYEDSVYGLAWSSREP-WIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       302 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~s~~~d~~v~vw~~~  345 (346)
                        .+.+..+.... ....+.|+|+++ .++++...++.|.++|+.
T Consensus       360 --~kvv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~VsVID~~  401 (426)
T 3c75_H          360 --GERINKIELGH-EIDSINVSQDAEPLLYALSAGTQTLHIYDAA  401 (426)
T ss_dssp             --CCEEEEEEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEETT
T ss_pred             --CeEEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCeEEEEECC
Confidence              77777775433 479999999997 455444469999999975

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.45  E-value=8.7e-12  Score=105.45  Aligned_cols=179  Identities=14%  Similarity=0.103  Sum_probs=122.9

Q ss_pred             ceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCC--CCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCe
Q 019059           67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQL--NSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEEN  144 (346)
Q Consensus        67 ~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~  144 (346)
                      .++.+++++....++++    +.+ .+.+|++.......  .....++.... .+.. |+.++|  ++.. ++++ .++.
T Consensus        39 ~~nlLais~~~gll~a~----~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~-L~v~-~~~~  107 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAA----SGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQ-VLVS-TRNA  107 (388)
T ss_dssp             CCBCEEEETTTTEEEEE----ETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTE-EEEE-ESSE
T ss_pred             cccEEEEcCCCCEEEEe----CCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCE-EEEE-cCCc
Confidence            68999999988888775    344 66779987322000  00002222223 4556 999999  7774 4444 7899


Q ss_pred             EEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccceeEEEeCCCCCcEE
Q 019059          145 IFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLL  224 (346)
Q Consensus       145 i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l  224 (346)
                      |++||+.+.........     +...+.++.+.+.  .++++..||.|.+||+.++.... +. ..|++++|+|+|   +
T Consensus       108 l~v~dv~sl~~~~~~~~-----~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-~~-~~Vs~v~WSpkG---~  175 (388)
T 1xip_A          108 LYSLDLEELSEFRTVTS-----FEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-LA-QNVTSFDVTNSQ---L  175 (388)
T ss_dssp             EEEEESSSTTCEEEEEE-----CSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-EE-ESEEEEEECSSE---E
T ss_pred             EEEEEchhhhccCccce-----eecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-cc-CCceEEEEcCCc---e
Confidence            99999986553322221     2335777777654  38888999999999999877543 21 229999999998   4


Q ss_pred             EEecCCCeEEEEEcccCCcc--eeee------c---CCCcceEEEEeCCCCCcEEEE
Q 019059          225 VTAADESGIHLWDLRMLKAP--IQEL------P---GHTHWTWAVCCNPEYDGFILS  270 (346)
Q Consensus       225 ~~~~~dg~i~i~d~~~~~~~--~~~~------~---~~~~~v~~v~~~~~~~~~l~s  270 (346)
                      +.|..||.+++|+... ...  ..++      .   +|...|.+|.|.+++ .++++
T Consensus       176 ~vg~~dg~i~~~~~~~-~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~-~flv~  230 (388)
T 1xip_A          176 AVLLKDRSFQSFAWRN-GEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQ-DFLAV  230 (388)
T ss_dssp             EEEETTSCEEEEEEET-TEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSS-EEEEE
T ss_pred             EEEEcCCcEEEEcCCC-ccccccceecCCcccccccCCCeeEEEEEEecCC-eEEEE
Confidence            6688899999998875 322  3344      2   377899999999998 77776

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.45  E-value=1.3e-10  Score=94.69  Aligned_cols=208  Identities=10%  Similarity=0.022  Sum_probs=143.5

Q ss_pred             CCCCeEEEEEecCCCCeEEEeeeeccc-cceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeee
Q 019059           39 KEENEVHLLRLSSGGTELICEGLFSHP-NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD  117 (346)
Q Consensus        39 ~~~~~i~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~  117 (346)
                      ..++.+++|+...  ..+. ..+..+. ..+.++.++|+++.+++      .++.|..||..          ++.+-.+.
T Consensus        12 ~~~~~v~~~d~~t--G~~~-w~~~~~~~~~~~~~~~~pdG~ilvs------~~~~V~~~d~~----------G~~~W~~~   72 (276)
T 3no2_A           12 SGWNKIAIINKDT--KEIV-WEYPLEKGWECNSVAATKAGEILFS------YSKGAKMITRD----------GRELWNIA   72 (276)
T ss_dssp             TTCSEEEEEETTT--TEEE-EEEECCTTCCCCEEEECTTSCEEEE------CBSEEEEECTT----------SCEEEEEE
T ss_pred             CCCCEEEEEECCC--CeEE-EEeCCCccCCCcCeEECCCCCEEEe------CCCCEEEECCC----------CCEEEEEc
Confidence            3568888886433  3333 3333343 47889999999986663      35678888863          56666666


Q ss_pred             cc-CCceEEEEeecCCCCcEEEEec-CCeEEEEEcCCCCCCceeeeccc-CCCceeeEEEEeCCCCCcEEEEecCCeEEE
Q 019059          118 AH-VGKINCVLWWSSGRHDKLVSID-EENIFLWSLDCSNKNAQVQSKQS-SGMLHYLSGGAWDPHDVNAVAATCESSVQF  194 (346)
Q Consensus       118 ~~-~~~i~~~~~~~~~~~~~~~~~~-d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  194 (346)
                      .+ ...+.++.+.++|+. +++.+. ++.|..+|. +++...+...... ..+......+++.+++.++++...++.|..
T Consensus        73 ~~~~~~~~~~~~~~dG~~-lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~  150 (276)
T 3no2_A           73 APAGCEMQTARILPDGNA-LVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVRE  150 (276)
T ss_dssp             CCTTCEEEEEEECTTSCE-EEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEE
T ss_pred             CCCCccccccEECCCCCE-EEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEE
Confidence            54 357889999999993 555554 667777775 3443333322111 122234556678999999998888999999


Q ss_pred             EEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCC------cceEEEEeCCCCCcE
Q 019059          195 WDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHT------HWTWAVCCNPEYDGF  267 (346)
Q Consensus       195 ~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------~~v~~v~~~~~~~~~  267 (346)
                      ||.. ++.+..+.... +.++...+++. +++++..++.|..+|..+ ++.+.++..+.      ..+..+...++| .+
T Consensus       151 ~d~~-G~~~w~~~~~~~~~~~~~~~~g~-~~v~~~~~~~v~~~d~~t-G~~~w~~~~~~~~~~~l~~~~~~~~~~~G-~i  226 (276)
T 3no2_A          151 IAPN-GQLLNSVKLSGTPFSSAFLDNGD-CLVACGDAHCFVQLNLES-NRIVRRVNANDIEGVQLFFVAQLFPLQNG-GL  226 (276)
T ss_dssp             ECTT-SCEEEEEECSSCCCEEEECTTSC-EEEECBTTSEEEEECTTT-CCEEEEEEGGGSBSCCCSEEEEEEECTTS-CE
T ss_pred             ECCC-CCEEEEEECCCCccceeEcCCCC-EEEEeCCCCeEEEEeCcC-CcEEEEecCCCCCCccccccccceEcCCC-CE
Confidence            9998 88888877544 77788889998 888888888999999886 54666664322      237788888999 77


Q ss_pred             EEEe
Q 019059          268 ILSA  271 (346)
Q Consensus       268 l~s~  271 (346)
                      +++.
T Consensus       227 ~v~~  230 (276)
T 3no2_A          227 YICN  230 (276)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            7665

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.45  E-value=1.3e-12  Score=110.51  Aligned_cols=174  Identities=10%  Similarity=0.036  Sum_probs=119.4

Q ss_pred             ceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCC-----ceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEE
Q 019059          122 KINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKN-----AQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWD  196 (346)
Q Consensus       122 ~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d  196 (346)
                      .++.+++++... ++++++.+ .+.+|++......     ..........+.. |+.++|  ++..|+++ .++.|++||
T Consensus        39 ~~nlLais~~~g-ll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKS-LFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTT-EEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCC-EEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            689999999888 35555544 6777987633200     0000000011334 999999  88888888 889999999


Q ss_pred             ccCCCccceeeccc--eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCC
Q 019059          197 LRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTD  274 (346)
Q Consensus       197 ~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d  274 (346)
                      +++.........-.  +.++.+.+.   -++++..||.+.+||+.... ...    +...|++++|+|+|   ++.|..|
T Consensus       113 v~sl~~~~~~~~~~~~v~~i~~~~p---~~av~~~dG~L~v~dl~~~~-~~~----~~~~Vs~v~WSpkG---~~vg~~d  181 (388)
T 1xip_A          113 LEELSEFRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKS-TKQ----LAQNVTSFDVTNSQ---LAVLLKD  181 (388)
T ss_dssp             SSSTTCEEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCC-EEE----EEESEEEEEECSSE---EEEEETT
T ss_pred             chhhhccCccceeecceeeEEecCC---CEEEEECCCCEEEEEccCCc-ccc----ccCCceEEEEcCCc---eEEEEcC
Confidence            98776544333111  777766644   27778899999999998633 222    45689999999998   6778889


Q ss_pred             CeEEEEecCCCCCCCCCcccccCCcccccccc--cccc------c---cccceeeEEEeCCCCCcEEEE
Q 019059          275 STVNLWLVSTSNHDELPSESLVESPNQRANSL--LNSY------S---DYEDSVYGLAWSSREPWIFAS  332 (346)
Q Consensus       275 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~------~---~~~~~v~~~~~~~~~~~~l~s  332 (346)
                      |.+++|+...                   .+.  ..++      .   +|...|.+|.|.+++. ++++
T Consensus       182 g~i~~~~~~~-------------------~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~-flv~  230 (388)
T 1xip_A          182 RSFQSFAWRN-------------------GEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQD-FLAV  230 (388)
T ss_dssp             SCEEEEEEET-------------------TEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSE-EEEE
T ss_pred             CcEEEEcCCC-------------------ccccccceecCCcccccccCCCeeEEEEEEecCCe-EEEE
Confidence            9999998876                   222  2222      2   3667899999999886 5544

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.41  E-value=3.8e-11  Score=101.33  Aligned_cols=239  Identities=7%  Similarity=-0.047  Sum_probs=143.9

Q ss_pred             cceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceee----eeeeccCCceEEEEeecCCCCcEEEEec
Q 019059           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERI----AALDAHVGKINCVLWWSSGRHDKLVSID  141 (346)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~  141 (346)
                      ..+..++++|+++.+++..  ...++.++||.+..       ....+.    .....+-..+..++++++++ ++++...
T Consensus        17 ~~p~~va~~~~g~~~v~~~--~~~~~~~~l~~~~~-------g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~-L~v~D~g   86 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLH--QFYQPEMQVAELTQ-------DGLIPFPPQSGNAIITFDTVLGIKSDGNGI-VWMLDNG   86 (343)
T ss_dssp             SCEEEEEECTTSCEEEEEC--GGGCCSCSEEEEET-------TEEEESCCCCSSCCCCCSCEEEEEECSSSE-EEEEECH
T ss_pred             CCcceEEECCCCCEEEEeC--CCCCCceEEEEECC-------CCeecCCCcccCcccceeEeeEEEEcCCCc-EEEEcCC
Confidence            5788999999987666642  11123366776641       011100    11123456789999999987 4554433


Q ss_pred             -----CCeEEEEEcCCCCCCceeeecc-cCCCceeeEEEEeCCCCCcEEEE-e---cCCeEEEEEccCCCccceeec---
Q 019059          142 -----EENIFLWSLDCSNKNAQVQSKQ-SSGMLHYLSGGAWDPHDVNAVAA-T---CESSVQFWDLRSMGKTNSIEH---  208 (346)
Q Consensus       142 -----d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~-~---~d~~i~i~d~~~~~~~~~~~~---  208 (346)
                           +..|.+||+.+++....+.... ...+...+..+++++++..++.+ .   .++.|.+||+.+++..+.+..   
T Consensus        87 ~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~  166 (343)
T 2qe8_A           87 NQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPG  166 (343)
T ss_dssp             HHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTT
T ss_pred             CCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCc
Confidence                 5799999998765333332211 11222356889999866555544 3   578999999987654332210   


Q ss_pred             ---------------------------cc-eeEEEeCCCCCcEEEEecCC-CeEEEEEcccCCc-------cee--eecC
Q 019059          209 ---------------------------AH-VRNVDYDTKKKHLLVTAADE-SGIHLWDLRMLKA-------PIQ--ELPG  250 (346)
Q Consensus       209 ---------------------------~~-v~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~-------~~~--~~~~  250 (346)
                                                 .. +..|+|+|+++ .|+.+... ..+..++......       ...  ...+
T Consensus       167 ~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~-~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g  245 (343)
T 2qe8_A          167 IAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENE-WLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYS  245 (343)
T ss_dssp             TSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSC-EEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEE
T ss_pred             ccccccceeECCEEEEeccCCCceeceecccceeEeccCCC-EEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecc
Confidence                                       01 58899999998 45554444 4666665431110       000  1112


Q ss_pred             CCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccccc-ccceeeEEEeCCCCCcE
Q 019059          251 HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD-YEDSVYGLAWSSREPWI  329 (346)
Q Consensus       251 ~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~  329 (346)
                      +......++++++| .++++...++.|.+||...                   ++....... +-..+.+++|.+++. +
T Consensus       246 ~~g~pdgia~d~~G-~l~va~~~~~~V~~~d~~~-------------------G~~~~~~~~~~~~~p~~va~~~~g~-l  304 (343)
T 2qe8_A          246 EKPICDGISIDKDH-NIYVGDLAHSAIGVITSAD-------------------RAYKLLVTDEKLSWTDSFNFGSDGY-L  304 (343)
T ss_dssp             ECCSCSCEEECTTC-CEEEEEGGGTEEEEEETTT-------------------TEEEEEEECGGGSCEEEEEECTTSC-E
T ss_pred             cCCCCceEEECCCC-CEEEEccCCCeEEEEECCC-------------------CCEEEEEECCceecCCeeEECCCCc-E
Confidence            33456779999999 8899988899999999843                   332211111 234588999999986 6


Q ss_pred             EEEeecC
Q 019059          330 FASLSYD  336 (346)
Q Consensus       330 l~s~~~d  336 (346)
                      +++.+..
T Consensus       305 ~v~~~~~  311 (343)
T 2qe8_A          305 YFDCNQL  311 (343)
T ss_dssp             EEEECCG
T ss_pred             EEEeCcc
Confidence            6666533

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.40  E-value=2e-10  Score=94.86  Aligned_cols=203  Identities=9%  Similarity=0.022  Sum_probs=129.6

Q ss_pred             cCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEcc
Q 019059          119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLR  198 (346)
Q Consensus       119 ~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~  198 (346)
                      +..-..+..|++++..++++...++.|..||..++.. . ...     ....+.+++++++++ ++++. +..|.+||..
T Consensus        11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~-~~~-----~~~~~~~i~~~~dG~-l~v~~-~~~l~~~d~~   81 (297)
T 3g4e_A           11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-Q-RVT-----MDAPVSSVALRQSGG-YVATI-GTKFCALNWK   81 (297)
T ss_dssp             CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-E-EEE-----CSSCEEEEEEBTTSS-EEEEE-TTEEEEEETT
T ss_pred             CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-E-EEe-----CCCceEEEEECCCCC-EEEEE-CCeEEEEECC
Confidence            3345568899997776666666689999999986542 1 111     123688999999998 44444 5689999998


Q ss_pred             CCCccceeec-----cc-eeEEEeCCCCCcEEEEecC---------CCeEEEEEcccCCcceeeecCCCcceEEEEeCCC
Q 019059          199 SMGKTNSIEH-----AH-VRNVDYDTKKKHLLVTAAD---------ESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPE  263 (346)
Q Consensus       199 ~~~~~~~~~~-----~~-v~~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~  263 (346)
                      +++.......     .. ++.++++|+|. ++++...         ...-.+|.+..... +..+..+....+.++|+|+
T Consensus        82 ~g~~~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~~~~~~~pngi~~spd  159 (297)
T 3g4e_A           82 EQSAVVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPDHH-VKKYFDQVDISNGLDWSLD  159 (297)
T ss_dssp             TTEEEEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTTSC-EEEEEEEESBEEEEEECTT
T ss_pred             CCcEEEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECCCC-EEEEeeccccccceEEcCC
Confidence            7764322221     12 88999999998 6554422         12334555443232 3333333455688999999


Q ss_pred             CCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEee
Q 019059          264 YDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHM  343 (346)
Q Consensus       264 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~  343 (346)
                      +..++++.+.++.|.+||+.......            ...+....+..+...+..++++++|. +.++...++.|.+|+
T Consensus       160 g~~lyv~~~~~~~i~~~~~d~~~G~~------------~~~~~~~~~~~~~~~p~g~~~d~~G~-lwva~~~~~~v~~~d  226 (297)
T 3g4e_A          160 HKIFYYIDSLSYSVDAFDYDLQTGQI------------SNRRSVYKLEKEEQIPDGMCIDAEGK-LWVACYNGGRVIRLD  226 (297)
T ss_dssp             SCEEEEEEGGGTEEEEEEECTTTCCE------------EEEEEEEECCGGGCEEEEEEEBTTSC-EEEEEETTTEEEEEC
T ss_pred             CCEEEEecCCCCcEEEEeccCCCCcc------------cCcEEEEECCCCCCCCCeeEECCCCC-EEEEEcCCCEEEEEc
Confidence            93344666778899999974200000            00122233333445678999999996 777877788899998


Q ss_pred             ec
Q 019059          344 LE  345 (346)
Q Consensus       344 ~~  345 (346)
                      .+
T Consensus       227 ~~  228 (297)
T 3g4e_A          227 PV  228 (297)
T ss_dssp             TT
T ss_pred             CC
Confidence            75

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.40  E-value=4.3e-11  Score=100.92  Aligned_cols=218  Identities=8%  Similarity=-0.150  Sum_probs=136.7

Q ss_pred             eEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEe---------cCCeEEEEEcCCCCCCceeeec
Q 019059           92 GAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI---------DEENIFLWSLDCSNKNAQVQSK  162 (346)
Q Consensus        92 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---------~d~~i~vwd~~~~~~~~~~~~~  162 (346)
                      .|.+.|..         +.+.+.++.....+  .+.++||++.++++..         .++.|.+||+.+.+....+...
T Consensus        47 ~vsvID~~---------t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~  115 (368)
T 1mda_H           47 ENWVSCAG---------CGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELP  115 (368)
T ss_dssp             EEEEEETT---------TTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEET
T ss_pred             eEEEEECC---------CCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECC
Confidence            88899988         78888888766666  7999999998666653         3688999999988766555432


Q ss_pred             ccCC--CceeeEEEEeCCCCCcEEEEec--CCeEEE--EEccCCCccceeeccc---------eeEEEeCCCCCc-----
Q 019059          163 QSSG--MLHYLSGGAWDPHDVNAVAATC--ESSVQF--WDLRSMGKTNSIEHAH---------VRNVDYDTKKKH-----  222 (346)
Q Consensus       163 ~~~~--~~~~v~~~~~~~~~~~l~~~~~--d~~i~i--~d~~~~~~~~~~~~~~---------v~~~~~~~~~~~-----  222 (346)
                      ....  .......++++||+++++++..  +..+.+  +|+.+   +..+..+.         -.-+++++++..     
T Consensus       116 ~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~  192 (368)
T 1mda_H          116 DAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDL  192 (368)
T ss_dssp             TSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEEC
T ss_pred             CccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEEC
Confidence            1000  0014568899999999998874  467888  99866   22221100         001222222220     


Q ss_pred             -------------------------------EEEEecCCCeEEEEEcccCC-cceeeecC-------C---CcceEEEEe
Q 019059          223 -------------------------------LLVTAADESGIHLWDLRMLK-APIQELPG-------H---THWTWAVCC  260 (346)
Q Consensus       223 -------------------------------~l~~~~~dg~i~i~d~~~~~-~~~~~~~~-------~---~~~v~~v~~  260 (346)
                                                     .++..+. +.+.+.|..... ..+..+..       +   ......+.+
T Consensus       193 ~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~  271 (368)
T 1mda_H          193 AAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAK  271 (368)
T ss_dssp             CSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEE
T ss_pred             ccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEE
Confidence                                           1122222 556666654311 11111110       0   011122679


Q ss_pred             CCCCCcEEEEe-c---C-----CCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEE
Q 019059          261 NPEYDGFILSA-G---T-----DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFA  331 (346)
Q Consensus       261 ~~~~~~~l~s~-~---~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  331 (346)
                      +|++ ..++.+ .   .     ++.+.++|+.+                   .+.+..+.... ....++|+|+++++++
T Consensus       272 s~dg-~~lyV~~~~~~~~~~~~~~~~~ViD~~t-------------------~~vv~~i~vg~-~p~gi~~s~Dg~~l~v  330 (368)
T 1mda_H          272 LKNT-DGIMILTVEHSRSCLAAAENTSSVTASV-------------------GQTSGPISNGH-DSDAIIAAQDGASDNY  330 (368)
T ss_dssp             ETTT-TEEEEEEEECSSCTTSCEEEEEEEESSS-------------------CCEEECCEEEE-EECEEEECCSSSCEEE
T ss_pred             cCCC-CEEEEEeccccCcccccCCCEEEEECCC-------------------CeEEEEEECCC-CcceEEECCCCCEEEE
Confidence            9999 555543 3   2     23566999998                   77777776544 4899999999986788


Q ss_pred             Eee-cCCeEEEeeec
Q 019059          332 SLS-YDGRVRNHMLE  345 (346)
Q Consensus       332 s~~-~d~~v~vw~~~  345 (346)
                      +.. .++.|.++|+.
T Consensus       331 a~~~~~~~VsVID~~  345 (368)
T 1mda_H          331 ANSAGTEVLDIYDAA  345 (368)
T ss_dssp             EEETTTTEEEEEESS
T ss_pred             EccCCCCeEEEEECC
Confidence            888 69999999975

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.37  E-value=6.1e-11  Score=109.60  Aligned_cols=198  Identities=15%  Similarity=0.146  Sum_probs=129.9

Q ss_pred             cCCceEEEEeecCCCCcEEEEecC----CeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCC----
Q 019059          119 HVGKINCVLWWSSGRHDKLVSIDE----ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCES----  190 (346)
Q Consensus       119 ~~~~i~~~~~~~~~~~~~~~~~~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----  190 (346)
                      |...+..++|||||++++++....    ..|++||+.+++........      .....++|+ |++.|+.+..+.    
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~------~k~~~~~Ws-Dg~~l~y~~~~~~~~~  199 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD------VKFSGISWL-GNEGFFYSSYDKPDGS  199 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE------EESCCCEEE-TTTEEEEEESSCCC--
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC------ceeccEEEe-CCCEEEEEEecCcccc
Confidence            455788999999999755555332    57999999987632221110      013578999 999999888763    


Q ss_pred             ---------eEEEEEccCCCcc--ceee-cc-c---eeEEEeCCCCCcEEEEecC---CCeEEEEEcccCCcceeeecCC
Q 019059          191 ---------SVQFWDLRSMGKT--NSIE-HA-H---VRNVDYDTKKKHLLVTAAD---ESGIHLWDLRMLKAPIQELPGH  251 (346)
Q Consensus       191 ---------~i~i~d~~~~~~~--~~~~-~~-~---v~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~  251 (346)
                               .|++|++.++...  ..+. .. +   ..++.|+|++++++++...   ...|+++|+.........+..+
T Consensus       200 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~  279 (693)
T 3iuj_A          200 ELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGD  279 (693)
T ss_dssp             -----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECS
T ss_pred             cccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCC
Confidence                     4999999876532  1111 22 2   6789999999965555442   3589999998644356666666


Q ss_pred             CcceEEEEeCCCCCcEEEEecCC---CeEEEEecCCCCCCCCCcccccCCcccccccc--ccccccccceeeEEEeCCCC
Q 019059          252 THWTWAVCCNPEYDGFILSAGTD---STVNLWLVSTSNHDELPSESLVESPNQRANSL--LNSYSDYEDSVYGLAWSSRE  326 (346)
Q Consensus       252 ~~~v~~v~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~  326 (346)
                      ....... |++++..+++....+   +.|..+|+..                   +..  ...+..|...+.  .|++++
T Consensus       280 ~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~-------------------~~~~~~~~l~~~~~~~~--~~s~~g  337 (693)
T 3iuj_A          280 LDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAAN-------------------PGPAHWRDLIPERQQVL--TVHSGS  337 (693)
T ss_dssp             SSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTS-------------------CCGGGCEEEECCCSSCE--EEEEET
T ss_pred             CCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCC-------------------CCccccEEEecCCCCEE--EEEEEC
Confidence            6666555 666763555555544   5788999886                   222  233444554454  888888


Q ss_pred             CcEEEEeecCC--eEEEeeec
Q 019059          327 PWIFASLSYDG--RVRNHMLE  345 (346)
Q Consensus       327 ~~~l~s~~~d~--~v~vw~~~  345 (346)
                      +.++++...++  .|++|+++
T Consensus       338 ~~lv~~~~~~g~~~l~~~d~~  358 (693)
T 3iuj_A          338 GYLFAEYMVDATARVEQFDYE  358 (693)
T ss_dssp             TEEEEEEEETTEEEEEEECTT
T ss_pred             CEEEEEEEECCeeEEEEEECC
Confidence            75555555665  57787764

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.37  E-value=1.7e-09  Score=91.90  Aligned_cols=196  Identities=12%  Similarity=0.093  Sum_probs=126.8

Q ss_pred             CCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeee-------ccCCceEEEEeecCCCCcEEEEecC-----
Q 019059           75 PFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD-------AHVGKINCVLWWSSGRHDKLVSIDE-----  142 (346)
Q Consensus        75 ~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~~~~~~~d-----  142 (346)
                      +++++|++.   +..+..|.|+|+.....     ..+..+++.       .....-..+...|+|  +++++..+     
T Consensus        93 ~~r~~l~v~---~l~s~~I~viD~~t~p~-----~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~  162 (462)
T 2ece_A           93 IERRFLIVP---GLRSSRIYIIDTKPNPR-----EPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEG  162 (462)
T ss_dssp             CCSCEEEEE---BTTTCCEEEEECCSCTT-----SCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCS
T ss_pred             ccCCEEEEc---cCCCCeEEEEECCCCCC-----CceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCC
Confidence            788888887   57778999999862111     124444442       111244567788998  56666434     


Q ss_pred             -CeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEe-------------------cCCeEEEEEccCCCc
Q 019059          143 -ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT-------------------CESSVQFWDLRSMGK  202 (346)
Q Consensus       143 -~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------------------~d~~i~i~d~~~~~~  202 (346)
                       +.|.++|..+.+.........  +....-+.+.|+|+++.++++.                   .+.+|.+||+.+++.
T Consensus       163 ~g~v~vlD~~T~~v~~~~~~~~--~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~  240 (462)
T 2ece_A          163 PGGILMLDHYSFEPLGKWEIDR--GDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKR  240 (462)
T ss_dssp             CCEEEEECTTTCCEEEECCSBC--TTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEE
T ss_pred             CCeEEEEECCCCeEEEEEccCC--CCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcE
Confidence             789999998766444333221  1112345688899999777774                   368999999999877


Q ss_pred             cceeecc---c-eeEEEe--CCCCCcEEEEec-----CCCeEEEEEcccCCc--ceee--ecC----------------C
Q 019059          203 TNSIEHA---H-VRNVDY--DTKKKHLLVTAA-----DESGIHLWDLRMLKA--PIQE--LPG----------------H  251 (346)
Q Consensus       203 ~~~~~~~---~-v~~~~~--~~~~~~~l~~~~-----~dg~i~i~d~~~~~~--~~~~--~~~----------------~  251 (346)
                      ..++..+   . ...+.|  +|++++.+++.-     .+++|.+|.... +.  ..+.  +..                -
T Consensus       241 ~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~-g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~  319 (462)
T 2ece_A          241 IHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED-GKWNAEKVIEIPAEPLEGNLPEILKPFKAV  319 (462)
T ss_dssp             EEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET-TEEEEEEEEEECCEECCSSCCGGGGGGTEE
T ss_pred             eeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC-CceeEEEEEeCCCccccccccccccccccC
Confidence            7777754   2 566655  999996566555     677887766543 21  0010  000                0


Q ss_pred             CcceEEEEeCCCCCcEEEEecC-CCeEEEEecCC
Q 019059          252 THWTWAVCCNPEYDGFILSAGT-DSTVNLWLVST  284 (346)
Q Consensus       252 ~~~v~~v~~~~~~~~~l~s~~~-d~~i~iwd~~~  284 (346)
                      ......|.++|+| ++|+++.. .+.|.+||+..
T Consensus       320 ~~~pa~I~lS~DG-rfLYVSnrg~d~VavfdV~d  352 (462)
T 2ece_A          320 PPLVTDIDISLDD-KFLYLSLWGIGEVRQYDISN  352 (462)
T ss_dssp             CCCCCCEEECTTS-CEEEEEETTTTEEEEEECSS
T ss_pred             CCceeEEEECCCC-CEEEEEeCCCCEEEEEEecC
Confidence            2346789999999 66665554 78999999864

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.36  E-value=1.9e-10  Score=95.64  Aligned_cols=204  Identities=7%  Similarity=0.057  Sum_probs=128.9

Q ss_pred             cCCceEEEEeecCCCCcEEE-------EecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCC-CCcEEEEecCC
Q 019059          119 HVGKINCVLWWSSGRHDKLV-------SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPH-DVNAVAATCES  190 (346)
Q Consensus       119 ~~~~i~~~~~~~~~~~~~~~-------~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~  190 (346)
                      .-....+++|++++. ++++       ...++.|.+||..+++. ..+......++...+.+++++++ +. ++++....
T Consensus        16 ~~~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~~~~i~~~~~~g~-l~v~~~~~   92 (314)
T 1pjx_A           16 DIPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKK-TVICKPEVNGYGGIPAGCQCDRDANQ-LFVADMRL   92 (314)
T ss_dssp             CCTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCE-EEEECCEETTEECCEEEEEECSSSSE-EEEEETTT
T ss_pred             cCCCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcE-EEEEecccCCCCCCCceEEEecCCCc-EEEEECCC
Confidence            334568899998886 4555       35688999999876542 22211111122346889999998 55 55555455


Q ss_pred             eEEEEEccCCCccce-ee--c---cc-eeEEEeCCCCCcEEEEecCC---------------CeEEEEEcccCCcceeee
Q 019059          191 SVQFWDLRSMGKTNS-IE--H---AH-VRNVDYDTKKKHLLVTAADE---------------SGIHLWDLRMLKAPIQEL  248 (346)
Q Consensus       191 ~i~i~d~~~~~~~~~-~~--~---~~-v~~~~~~~~~~~~l~~~~~d---------------g~i~i~d~~~~~~~~~~~  248 (346)
                      .|.+||.. ++.... ..  .   .. +.++++++++. ++++...+               +.|..+|..  .. ...+
T Consensus        93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--g~-~~~~  167 (314)
T 1pjx_A           93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD--GQ-MIQV  167 (314)
T ss_dssp             EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT--SC-EEEE
T ss_pred             CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccccccCCCCeEEEECCC--CC-EEEe
Confidence            79999988 654322 11  0   12 88999999997 66665544               466667654  32 2333


Q ss_pred             cCCCcceEEEEeC----CCCCcEE-EEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccccccc-ceeeEEEe
Q 019059          249 PGHTHWTWAVCCN----PEYDGFI-LSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYE-DSVYGLAW  322 (346)
Q Consensus       249 ~~~~~~v~~v~~~----~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~  322 (346)
                      ..+......++|+    |++ ..| ++...++.|.+||.... ..            .........+..+. ..+..+++
T Consensus       168 ~~~~~~~~~i~~~~~~d~dg-~~l~v~~~~~~~i~~~~~~~~-g~------------~~~~~~~~~~~~~~~~~p~~i~~  233 (314)
T 1pjx_A          168 DTAFQFPNGIAVRHMNDGRP-YQLIVAETPTKKLWSYDIKGP-AK------------IENKKVWGHIPGTHEGGADGMDF  233 (314)
T ss_dssp             EEEESSEEEEEEEECTTSCE-EEEEEEETTTTEEEEEEEEET-TE------------EEEEEEEEECCCCSSCEEEEEEE
T ss_pred             ccCCCCcceEEEecccCCCC-CEEEEEECCCCeEEEEECCCC-Cc------------cccceEEEECCCCCCCCCCceEE
Confidence            3333456889999    998 555 44456789999997620 00            00011223334443 55788999


Q ss_pred             CCCCCcEEEEeecCCeEEEeeec
Q 019059          323 SSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       323 ~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      +++|. ++++...++.|.+|+.+
T Consensus       234 d~~G~-l~v~~~~~~~i~~~d~~  255 (314)
T 1pjx_A          234 DEDNN-LLVANWGSSHIEVFGPD  255 (314)
T ss_dssp             BTTCC-EEEEEETTTEEEEECTT
T ss_pred             CCCCC-EEEEEcCCCEEEEEcCC
Confidence            99996 77777778899999875

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.35  E-value=3.4e-09  Score=90.21  Aligned_cols=243  Identities=9%  Similarity=0.018  Sum_probs=148.8

Q ss_pred             eccCCCCcceEEEeeccc------CCCCeEEEEEecCCCCeEEEeeee--c---cccceEEeeecCCCCceEEEEeecCC
Q 019059           21 DVKADTDHTSFLTGTLSL------KEENEVHLLRLSSGGTELICEGLF--S---HPNEIWDLSSCPFDQRIFSTVFSTGE   89 (346)
Q Consensus        21 ~~~~~~~~~~~~~g~~~~------~~~~~i~~~~~~~~~~~~~~~~~~--~---h~~~v~~~~~~~~~~~l~~~~~~~~~   89 (346)
                      .+.+++++.++.+.....      ..++.+.+++....+. +....+.  .   +......++|+|++++|+++.  ...
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~-~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n--~~~  146 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLP-IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQ--FAA  146 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcE-EEEEECCCccccccCCCccceEECCCCCEEEEEe--cCC
Confidence            456777887777764311      1246677777654221 1111111  0   012345789999999999873  112


Q ss_pred             cceEEEEecCcccCCCCCccceeeee-eeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeee-cccCCC
Q 019059           90 SYGAAIWQIPELYGQLNSPQLERIAA-LDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQS-KQSSGM  167 (346)
Q Consensus        90 d~~i~vw~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~~~  167 (346)
                      +..|.++| .         ..+.+.. +... .   ++.+.|+++..+++.+.||.+.++|. +++....... ....+.
T Consensus       147 ~~~v~viD-~---------t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~  211 (373)
T 2mad_H          147 GPAVGLVV-Q---------GGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAA  211 (373)
T ss_pred             CCeEEEEE-C---------CCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCC
Confidence            56899999 8         5666666 5322 1   35567787766666678999999999 6543322110 000111


Q ss_pred             ceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCc--cceeec-----------cc-eeEEEeCCCCCcEEEEec-----
Q 019059          168 LHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGK--TNSIEH-----------AH-VRNVDYDTKKKHLLVTAA-----  228 (346)
Q Consensus       168 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~-----------~~-v~~~~~~~~~~~~l~~~~-----  228 (346)
                      ..-.....+.+++..++..+..+.+.+.|+.....  ...+..           +. ...++++|++..++++..     
T Consensus       212 ~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~  291 (373)
T 2mad_H          212 QNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAW  291 (373)
T ss_pred             cceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcc
Confidence            11122345666666666666788999999975532  111110           11 444889999884444432     


Q ss_pred             ----CCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCc-EEEEec-CCCeEEEEecCC
Q 019059          229 ----DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG-FILSAG-TDSTVNLWLVST  284 (346)
Q Consensus       229 ----~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~-~l~s~~-~d~~i~iwd~~~  284 (346)
                          ..+.|.++|+.+ .+.+..+.. ......+.|+|+| + +++++. .++.|.++|+.+
T Consensus       292 ~~~~~~~~V~VID~~t-~~vv~~i~~-g~~p~~i~~s~Dg-~~~l~v~~~~~~~V~ViD~~t  350 (373)
T 2mad_H          292 KLHAAAKEVTSVTGLV-GQTSSQISL-GHDVDAISVAQDG-GPDLYALSAGTEVLHIYDAGA  350 (373)
T ss_pred             cccCCCCeEEEEECCC-CEEEEEEEC-CCCcCeEEECCCC-CeEEEEEcCCCCeEEEEECCC
Confidence                135799999987 556666653 4468999999999 6 777777 589999999998

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.34  E-value=9.8e-11  Score=102.89  Aligned_cols=189  Identities=16%  Similarity=0.016  Sum_probs=135.4

Q ss_pred             CCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeec-cCCceEEEEe-e-cCCCCcEEEE-------------
Q 019059           76 FDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA-HVGKINCVLW-W-SSGRHDKLVS-------------  139 (346)
Q Consensus        76 ~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~-~-~~~~~~~~~~-------------  139 (346)
                      ||++++++   ...+..|.+.|++         ..+....+.- .......+++ + |++.++++++             
T Consensus       100 DG~~lfVn---d~~~~rVavIdl~---------t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l  167 (595)
T 1fwx_A          100 DGRFLFMN---DKANTRVARVRCD---------VMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNM  167 (595)
T ss_dssp             EEEEEEEE---ETTTTEEEEEETT---------TTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSST
T ss_pred             CCCEEEEE---cCCCCEEEEEECC---------CceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCccc
Confidence            78888886   3566789999998         6666664432 2345788887 4 8999755543             


Q ss_pred             ----ecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCC-------------------------
Q 019059          140 ----IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCES-------------------------  190 (346)
Q Consensus       140 ----~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-------------------------  190 (346)
                          -.++.+.+.|.++.+...++....      ....++++|+++++++++.+.                         
T Consensus       168 ~~~~~~~~~vtvID~~t~~v~~qI~Vgg------~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~  241 (595)
T 1fwx_A          168 EDVANYVNVFTAVDADKWEVAWQVLVSG------NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEI  241 (595)
T ss_dssp             TCGGGEEEEEEEEETTTTEEEEEEEESS------CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHH
T ss_pred             ccccccCceEEEEECCCCeEEEEEEeCC------CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccce
Confidence                224688999998655444443322      345678899999988888442                         


Q ss_pred             -------------eEEEEEccC--CCc-cceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCC-----------
Q 019059          191 -------------SVQFWDLRS--MGK-TNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK-----------  242 (346)
Q Consensus       191 -------------~i~i~d~~~--~~~-~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------  242 (346)
                                   .|.+.|.++  ++. +..+..+. ..++.++|||+++++++..+.+|.++|+.+..           
T Consensus       242 ~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~  321 (595)
T 1fwx_A          242 EKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRS  321 (595)
T ss_dssp             HHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGG
T ss_pred             eEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCccc
Confidence                         377888887  544 45565555 89999999999888888888999999998531           


Q ss_pred             cceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          243 APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       243 ~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      ..+.... -......++|+|+| ....+.-.|++|.+||+..
T Consensus       322 ~v~~~v~-vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          322 AVVAEPE-LGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             GEEECCB-CCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHH
T ss_pred             ceEEEcC-CCCCcceEEECCCC-eEEEEEecCCcEEEEEhhH
Confidence            1122222 33567889999999 8778888899999999875

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.33  E-value=4.1e-09  Score=90.92  Aligned_cols=206  Identities=10%  Similarity=-0.010  Sum_probs=128.8

Q ss_pred             CceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCC--eEEEEEcc
Q 019059          121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCES--SVQFWDLR  198 (346)
Q Consensus       121 ~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~i~d~~  198 (346)
                      .....++|+++++ ++++...++.|++||..++.. ..+....     .... ++|+|+++.++++..++  .|.++|..
T Consensus       131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~-~~~~~~~-----~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~  202 (409)
T 3hrp_A          131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKV-TTVHPGF-----KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKA  202 (409)
T ss_dssp             CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEE-EEEEETC-----CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGG
T ss_pred             CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEE-EEeeccC-----CCCc-eeEecCCCcEEEEecCCCceEEEEEcC
Confidence            3578999999988 455556678999999976432 2222211     1233 89999999888888755  89999988


Q ss_pred             CCCcccee----e-ccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeee-----cCCCcce--EEEEeCCCCC
Q 019059          199 SMGKTNSI----E-HAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL-----PGHTHWT--WAVCCNPEYD  265 (346)
Q Consensus       199 ~~~~~~~~----~-~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~~v--~~v~~~~~~~  265 (346)
                      .+.....+    . ... +.+++++|++..+++ +..++.|+.||.....  ...+     .++...-  ..++|+|++.
T Consensus       203 ~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~--~~~~~~~~~~g~~~~~P~~~ia~~p~~g  279 (409)
T 3hrp_A          203 SGWAPTRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQE--VTLIKQLELSGSLGTNPGPYLIYYFVDS  279 (409)
T ss_dssp             GTTCEEEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCC--EEEEEECCCCSCCCCSSCCEEEEETTTT
T ss_pred             CCceeEEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCC--EEEEecccccCCCCCCccccEEEeCCCC
Confidence            76553333    1 122 889999995443554 6668899999987532  2222     1222222  3899999542


Q ss_pred             cEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEee-cCCeEEEeee
Q 019059          266 GFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLS-YDGRVRNHML  344 (346)
Q Consensus       266 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~v~vw~~  344 (346)
                      .++++-..++.|+.|+......  ...... ...-...+.  . ....-.....++++|+|. ++++-. .+++|+.|++
T Consensus       280 ~lyv~d~~~~~I~~~~~~g~~~--~~~g~~-~~~g~~dg~--~-~~~~~~~P~gia~d~dG~-lyvad~~~~~~I~~~~~  352 (409)
T 3hrp_A          280 NFYMSDQNLSSVYKITPDGECE--WFCGSA-TQKTVQDGL--R-EEALFAQPNGMTVDEDGN-FYIVDGFKGYCLRKLDI  352 (409)
T ss_dssp             EEEEEETTTTEEEEECTTCCEE--EEEECT-TCCSCBCEE--G-GGCBCSSEEEEEECTTCC-EEEEETTTTCEEEEEET
T ss_pred             EEEEEeCCCCEEEEEecCCCEE--EEEeCC-CCCCcCCCc--c-cccEeCCCeEEEEeCCCC-EEEEeCCCCCEEEEEEC
Confidence            7777777788999998764100  000000 000000000  0 000112478999999997 888887 8899999984

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.33  E-value=9.7e-10  Score=91.98  Aligned_cols=193  Identities=10%  Similarity=-0.002  Sum_probs=122.7

Q ss_pred             eEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCc
Q 019059          123 INCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGK  202 (346)
Q Consensus       123 i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  202 (346)
                      ..+..|+|++..++++...++.|..||..++.. ... .  .   ...+.+++|+|+++.+++. . ..|.+||..+++.
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~-~--~---~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~  121 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRK-TVH-A--L---PFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVL  121 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE-EEE-E--C---SSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCE
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE-EEE-E--C---CCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcE
Confidence            457789998776666666688999999876432 111 1  1   1268889999998866654 3 4599999987764


Q ss_pred             cceeec-----cc-eeEEEeCCCCCcEEEEecC------CCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEE-E
Q 019059          203 TNSIEH-----AH-VRNVDYDTKKKHLLVTAAD------ESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFI-L  269 (346)
Q Consensus       203 ~~~~~~-----~~-v~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l-~  269 (346)
                      ......     .. +++++++|+|. ++++...      .+.|..++  . .. +..+..+......++|+|++ +.| +
T Consensus       122 ~~~~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~--~-g~-~~~~~~~~~~~~~i~~s~dg-~~lyv  195 (326)
T 2ghs_A          122 TLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA--K-GK-VTKLFADISIPNSICFSPDG-TTGYF  195 (326)
T ss_dssp             EEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE--T-TE-EEEEEEEESSEEEEEECTTS-CEEEE
T ss_pred             EEEeeCCCCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEe--C-Cc-EEEeeCCCcccCCeEEcCCC-CEEEE
Confidence            322211     12 89999999998 5554432      24455555  2 32 33333333456789999999 655 5


Q ss_pred             EecCCCeEEEEecC--CC-CCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          270 SAGTDSTVNLWLVS--TS-NHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       270 s~~~d~~i~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      +.+.++.|.+||+.  .+ ...              ..+.+..+......+..+.++++|. +.++...++.|.+|+.+
T Consensus       196 ~~~~~~~I~~~d~~~~~Gl~~~--------------~~~~~~~~~~~~~~p~gi~~d~~G~-lwva~~~~~~v~~~d~~  259 (326)
T 2ghs_A          196 VDTKVNRLMRVPLDARTGLPTG--------------KAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDTD  259 (326)
T ss_dssp             EETTTCEEEEEEBCTTTCCBSS--------------CCEEEEECTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECTT
T ss_pred             EECCCCEEEEEEcccccCCccc--------------CceEEEECCCCCCCCCeeEECCCCC-EEEEEeCCCEEEEECCC
Confidence            55667899999986  30 000              0011222222334567899999996 77666667889988864

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.32  E-value=7.1e-10  Score=93.46  Aligned_cols=199  Identities=8%  Similarity=-0.012  Sum_probs=128.8

Q ss_pred             eeecCCCCceEEEEee-cCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEe---------
Q 019059           71 LSSCPFDQRIFSTVFS-TGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI---------  140 (346)
Q Consensus        71 ~~~~~~~~~l~~~~~~-~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---------  140 (346)
                      ....|++..++++... ...++.|.+.|..         +.+.+.++.....+ . +.++|||++++++..         
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~---------t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~  106 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGE---------AGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGE  106 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETT---------TTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEE
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECC---------CCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCC
Confidence            4557888888876411 0115799999988         77888888765555 4 999999998666652         


Q ss_pred             cCCeEEEEEcCCCCCCceeeecc--cCCCceeeEEEEeCCCCCcEEEEec--CCeEEEEEccCCCccceeeccceeEEEe
Q 019059          141 DEENIFLWSLDCSNKNAQVQSKQ--SSGMLHYLSGGAWDPHDVNAVAATC--ESSVQFWDLRSMGKTNSIEHAHVRNVDY  216 (346)
Q Consensus       141 ~d~~i~vwd~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~v~~~~~  216 (346)
                      .++.|.+||..+.+....+....  ....-.....++++|||++++++..  ++.|.++|+.+++.+.++..+.+ ...+
T Consensus       107 ~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~-~~~~  185 (386)
T 3sjl_D          107 RTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC-YHIF  185 (386)
T ss_dssp             EEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-EEEE
T ss_pred             CCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc-ceee
Confidence            35789999999876555443321  0000114567899999999998864  68999999999998888764322 1122


Q ss_pred             CCCCCcEEEEecCCCeEEEEEcccCCcceeeecCC----CcceE-EEEe-CCCCCcEEEEecCCCeEEEEecCC
Q 019059          217 DTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGH----THWTW-AVCC-NPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       217 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~v~-~v~~-~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                       |.+...+++.+.||.+.+.++....+.......+    ..++. ...| .++| ++++ .+.+|.|.+.|+..
T Consensus       186 -P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG-~~~~-vs~~g~V~v~d~~~  256 (386)
T 3sjl_D          186 -PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAG-RLVW-PTYTGKIHQIDLSS  256 (386)
T ss_dssp             -EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTT-EEEE-EBTTSEEEEEECTT
T ss_pred             -cCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCC-cEEE-EeCCCEEEEEECCC
Confidence             4333356677778888777776523222211111    12221 2355 3677 5555 45579999999976

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.26  E-value=1.4e-08  Score=82.25  Aligned_cols=221  Identities=11%  Similarity=0.076  Sum_probs=141.3

Q ss_pred             cceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeE
Q 019059           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENI  145 (346)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i  145 (346)
                      ..+.+++|.|+++.|..+   ....+.|.+++++         .......+.........+++.+++..++++....+.|
T Consensus        36 ~~~~gi~~d~~~~~ly~~---d~~~~~I~~~~~~---------g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I  103 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWT---DISEPSIGRASLH---------GGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRI  103 (267)
T ss_dssp             EEEEEEEEETTTTEEEEE---ETTTTEEEEEESS---------SCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             CcEEEEEEecCCCEEEEE---ECCCCEEEEEecC---------CCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEE
Confidence            457899999988888776   3456789999986         2222222222224678999999877655555667899


Q ss_pred             EEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec---CCeEEEEEccCCCccceeecc--c-eeEEEeCCC
Q 019059          146 FLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC---ESSVQFWDLRSMGKTNSIEHA--H-VRNVDYDTK  219 (346)
Q Consensus       146 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~--~-v~~~~~~~~  219 (346)
                      .+++++... ...+....    ......++++|++..++.+..   .+.|..+++.... ...+...  . ...++++++
T Consensus       104 ~~~~~~g~~-~~~~~~~~----~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~  177 (267)
T 1npe_A          104 EVAKMDGTQ-RRVLFDTG----LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAF  177 (267)
T ss_dssp             EEEETTSCS-CEEEECSS----CSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETT
T ss_pred             EEEEcCCCC-EEEEEECC----CCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCC
Confidence            999987432 22222111    125688999997777766654   3688888876433 2222211  2 899999998


Q ss_pred             CCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCc
Q 019059          220 KKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESP  299 (346)
Q Consensus       220 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  299 (346)
                      +..++++-...+.|.++|+.. ......+.. ......++.. .+ .++++....+.|.++|..+               
T Consensus       178 ~~~lyv~d~~~~~I~~~~~~g-~~~~~~~~~-~~~P~gi~~d-~~-~lyva~~~~~~v~~~d~~~---------------  238 (267)
T 1npe_A          178 SSQLCWVDAGTHRAECLNPAQ-PGRRKVLEG-LQYPFAVTSY-GK-NLYYTDWKTNSVIAMDLAI---------------  238 (267)
T ss_dssp             TTEEEEEETTTTEEEEEETTE-EEEEEEEEC-CCSEEEEEEE-TT-EEEEEETTTTEEEEEETTT---------------
T ss_pred             CCEEEEEECCCCEEEEEecCC-CceEEEecC-CCCceEEEEe-CC-EEEEEECCCCeEEEEeCCC---------------
Confidence            775777777778999999874 222222222 2334566654 33 5555555678999999987               


Q ss_pred             ccccccccccccccc-ceeeEEEeCCCCC
Q 019059          300 NQRANSLLNSYSDYE-DSVYGLAWSSREP  327 (346)
Q Consensus       300 ~~~~~~~~~~~~~~~-~~v~~~~~~~~~~  327 (346)
                          ++.+..+.... .....+++.|++.
T Consensus       239 ----g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          239 ----SKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             ----TEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             ----CCceEEEccccccccceeeecCccC
Confidence                66666654332 2367788887753

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.26  E-value=1.2e-09  Score=93.74  Aligned_cols=192  Identities=8%  Similarity=-0.029  Sum_probs=126.4

Q ss_pred             CCCCceEEEEeecCCc----ceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEe---------c
Q 019059           75 PFDQRIFSTVFSTGES----YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI---------D  141 (346)
Q Consensus        75 ~~~~~l~~~~~~~~~d----~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---------~  141 (346)
                      |+++.++++.   ..+    +.|.+.|..         +.+.+.++.....+  .+.++||++.++++..         .
T Consensus        82 ~~~~~vyV~n---~~~~~~~~~VsVID~~---------t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~  147 (426)
T 3c75_H           82 PDARRVYIQD---PAHFAAITQQFVIDGS---------TGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKR  147 (426)
T ss_dssp             CCTTEEEEEE---CTTTCSSEEEEEEETT---------TTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEE
T ss_pred             CCCCEEEEEC---CCcCCCCCeEEEEECC---------CCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCC
Confidence            4566666653   222    799999998         77888888766666  8999999998666653         3


Q ss_pred             CCeEEEEEcCCCCCCceeeecccCC--CceeeEEEEeCCCCCcEEEEec--CCeEEEEEccCCCccceeeccceeEEEeC
Q 019059          142 EENIFLWSLDCSNKNAQVQSKQSSG--MLHYLSGGAWDPHDVNAVAATC--ESSVQFWDLRSMGKTNSIEHAHVRNVDYD  217 (346)
Q Consensus       142 d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~v~~~~~~  217 (346)
                      ++.|.++|..+.+....+.......  .......+.++||+++++++..  ++.|.+.|+.+++.+..+..+..  ....
T Consensus       148 ~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~--~~~~  225 (426)
T 3c75_H          148 TDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC--YHIF  225 (426)
T ss_dssp             EEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEE
T ss_pred             CCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc--eeec
Confidence            6789999999876555444320000  0123567899999999999874  57899999999998877764332  2233


Q ss_pred             CCCCcEEEEecCCCeEEEEEcccCCccee----eecCCCcce-EEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          218 TKKKHLLVTAADESGIHLWDLRMLKAPIQ----ELPGHTHWT-WAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       218 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~~v-~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      |++...+++.+.||.+.+.+... .+...    .+.....++ ..+.+.+++ ..++..+..+.|.+.|+..
T Consensus       226 p~g~~~~v~~~~dG~~~~V~~~~-~~v~~~~~~~~~v~~~p~~~~~~~~~dg-~~~~~~s~~g~V~ViD~~~  295 (426)
T 3c75_H          226 PASPTVFYMNCRDGSLARVDFAD-GETKVTNTEVFHTEDELLINHPAFSLRS-GRLVWPTYTGKIFQADLTA  295 (426)
T ss_dssp             EEETTEEEEEETTSSEEEEECCT-TCCEEEECCCCSCTTSCBCSCCEECTTT-CEEEEEBTTSEEEEEEECS
T ss_pred             cCCCcEEEEEcCCCCEEEEECCC-CcEEEEeeeeeccCCCceeeEeeecCCC-CEEEEEeCCCcEEEEeccC
Confidence            44433566666777777777733 32221    111111221 235678888 5555556678999999865

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.25  E-value=8.9e-10  Score=92.91  Aligned_cols=208  Identities=11%  Similarity=0.030  Sum_probs=127.9

Q ss_pred             CceEEEEeecCCCCcEEEEe--cCCeEEEEEcCCCCCCceeee--cccCCCceeeEEEEeCCCCCcEEEEec-----CCe
Q 019059          121 GKINCVLWWSSGRHDKLVSI--DEENIFLWSLDCSNKNAQVQS--KQSSGMLHYLSGGAWDPHDVNAVAATC-----ESS  191 (346)
Q Consensus       121 ~~i~~~~~~~~~~~~~~~~~--~d~~i~vwd~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~  191 (346)
                      .....++++++|+ ++++..  .++.++||.+.+++ ...+..  .....+...+.+++++++++.+++-..     +..
T Consensus        17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~   94 (343)
T 2qe8_A           17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPK   94 (343)
T ss_dssp             SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCE
T ss_pred             CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCe
Confidence            6789999999998 355532  23435666665321 111100  111234557899999999875555433     578


Q ss_pred             EEEEEccCCCccceeecc-------c-eeEEEeCCCCCcEEEEec---CCCeEEEEEcccCCcceeeecCC---------
Q 019059          192 VQFWDLRSMGKTNSIEHA-------H-VRNVDYDTKKKHLLVTAA---DESGIHLWDLRMLKAPIQELPGH---------  251 (346)
Q Consensus       192 i~i~d~~~~~~~~~~~~~-------~-v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~---------  251 (346)
                      |.+||+.+++....+...       . +..+++++++..++++..   .++.|.+||+.+ ....+.+..|         
T Consensus        95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~-g~~~r~~~~~~~~~~~~~~  173 (343)
T 2qe8_A           95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQT-GLAARVLQGYPGIAPEDID  173 (343)
T ss_dssp             EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTT-CCEEEECTTCTTTSCCSCC
T ss_pred             EEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCC-CCEEEEecCCCcccccccc
Confidence            999999988866555421       1 689999987654666655   678999999875 3333333221         


Q ss_pred             --------------------CcceEEEEeCCCCCcEEEEecCCC-eEEEEecCCCCCCCCCcccccCCccccccccccc-
Q 019059          252 --------------------THWTWAVCCNPEYDGFILSAGTDS-TVNLWLVSTSNHDELPSESLVESPNQRANSLLNS-  309 (346)
Q Consensus       252 --------------------~~~v~~v~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  309 (346)
                                          ...+..++|+|++ +.|+.+..++ .+..++.........           ...+.... 
T Consensus       174 ~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg-~~ly~~~~~~~~l~~~~~~~~~~~~~-----------~~~~~~~~~  241 (343)
T 2qe8_A          174 LVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAEN-EWLYLSPMHSTSMYRIKSADLSNLQL-----------TDAELGSKI  241 (343)
T ss_dssp             CEETTEECBEECTTSCEECCCCCEEEEEECTTS-CEEEEEESSCSEEEEEEHHHHTCTTC-----------CHHHHHTTC
T ss_pred             eeECCEEEEeccCCCceeceecccceeEeccCC-CEEEEEeCCCCeEEEEEHHHhcCCCC-----------Chhhhhcce
Confidence                                1235789999999 7777776665 454444321000000           00111111 


Q ss_pred             -cccccceeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059          310 -YSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       310 -~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~  344 (346)
                       ..++......++++++|. ++++...++.|.+|+.
T Consensus       242 ~~~g~~g~pdgia~d~~G~-l~va~~~~~~V~~~d~  276 (343)
T 2qe8_A          242 ERYSEKPICDGISIDKDHN-IYVGDLAHSAIGVITS  276 (343)
T ss_dssp             EEEEECCSCSCEEECTTCC-EEEEEGGGTEEEEEET
T ss_pred             EecccCCCCceEEECCCCC-EEEEccCCCeEEEEEC
Confidence             112333467899999986 8888888999999997

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.23  E-value=3e-09  Score=89.75  Aligned_cols=241  Identities=8%  Similarity=-0.065  Sum_probs=144.1

Q ss_pred             eEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEee------cCCcceEEEEecCcccCCCCCccceeeeee
Q 019059           43 EVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFS------TGESYGAAIWQIPELYGQLNSPQLERIAAL  116 (346)
Q Consensus        43 ~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~------~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~  116 (346)
                      .+.+++...  ....-..-.+. .+  .+.++|+++++.++...      |..++.|.+||+.         +.+.+.++
T Consensus        47 ~vsvID~~t--~~v~~~i~vG~-~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~---------T~~vv~~I  112 (368)
T 1mda_H           47 ENWVSCAGC--GVTLGHSLGAF-LS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPV---------TFLPIADI  112 (368)
T ss_dssp             EEEEEETTT--TEEEEEEEECT-TC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTT---------TCCEEEEE
T ss_pred             eEEEEECCC--CeEEEEEeCCC-CC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECC---------CCCEEEEE
Confidence            677776544  33332322333 34  79999999999887421      1246889999998         77788877


Q ss_pred             ecc-------CCceEEEEeecCCCCcEEEEec-CCeEEE--EEcCCCCCCceeeecccCCCc---eeeEEEEe-------
Q 019059          117 DAH-------VGKINCVLWWSSGRHDKLVSID-EENIFL--WSLDCSNKNAQVQSKQSSGML---HYLSGGAW-------  176 (346)
Q Consensus       117 ~~~-------~~~i~~~~~~~~~~~~~~~~~~-d~~i~v--wd~~~~~~~~~~~~~~~~~~~---~~v~~~~~-------  176 (346)
                      ...       ......+.++|||++++++... +..+.+  +|..+   ...+.... ..+.   ..-.-+.+       
T Consensus       113 ~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~-~~~~~p~g~~~~~~~~~dg~~~  188 (368)
T 1mda_H          113 ELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS-CFHIHPGAAATHYLGSCPASLA  188 (368)
T ss_dssp             EETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS-CCCCEEEETTEEECCCCTTSCE
T ss_pred             ECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC-ceEEccCCCeEEEEEcCCCCEE
Confidence            543       1235689999999985555433 567888  88864   11111000 0000   00000111       


Q ss_pred             ------------------------------CCCCCcEEEEecCCeEEEEEccCCC--ccceeec--------c---c-ee
Q 019059          177 ------------------------------DPHDVNAVAATCESSVQFWDLRSMG--KTNSIEH--------A---H-VR  212 (346)
Q Consensus       177 ------------------------------~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~--------~---~-v~  212 (346)
                                                    .+++..++..+. +.+.+.|+.+..  ....+..        +   . ..
T Consensus       189 ~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~  267 (368)
T 1mda_H          189 ASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQ  267 (368)
T ss_dssp             EEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSS
T ss_pred             EEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcce
Confidence                                          223333444444 677777876432  1111110        0   0 22


Q ss_pred             EEEeCCCCCcEEEEec---C-----CCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEec-CCCeEEEEecC
Q 019059          213 NVDYDTKKKHLLVTAA---D-----ESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG-TDSTVNLWLVS  283 (346)
Q Consensus       213 ~~~~~~~~~~~l~~~~---~-----dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~-~d~~i~iwd~~  283 (346)
                      .++++|++..++++..   .     ++.+.++|+.+ .+.+..+... .....+.|+|++..++++.. .++.|.++|+.
T Consensus       268 ~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t-~~vv~~i~vg-~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~  345 (368)
T 1mda_H          268 MVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV-GQTSGPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAA  345 (368)
T ss_dssp             CEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS-CCEEECCEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEESS
T ss_pred             eeEEcCCCCEEEEEeccccCcccccCCCEEEEECCC-CeEEEEEECC-CCcceEEECCCCCEEEEEccCCCCeEEEEECC
Confidence            3789999985554433   2     23566999997 4456666533 36889999999944667777 59999999999


Q ss_pred             CCCCCCCCcccccCCccccccccccccccccceeeEEEeCC
Q 019059          284 TSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS  324 (346)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  324 (346)
                      +                   .+.+.++..... ...+++.+
T Consensus       346 t-------------------~kvv~~I~vg~~-P~~i~~~~  366 (368)
T 1mda_H          346 S-------------------DQDQSSVELDKG-PESLSVQN  366 (368)
T ss_dssp             S-------------------CEEEEECCCCSC-CCEEECCC
T ss_pred             C-------------------CcEEEEEECCCC-CCEEEeec
Confidence            9                   788887765544 45666654

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.22  E-value=2.6e-09  Score=85.31  Aligned_cols=204  Identities=11%  Similarity=0.002  Sum_probs=137.0

Q ss_pred             cceeeeeeeccCC--ceEEEEeecCCCCcEEEEec--CCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEE
Q 019059          109 QLERIAALDAHVG--KINCVLWWSSGRHDKLVSID--EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAV  184 (346)
Q Consensus       109 ~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  184 (346)
                      ..+.+.++ .|..  ....+.|++++. ++++++.  ++.|.++|+.+++....+....    ......+++.  +..++
T Consensus         8 ~~~vv~~~-p~~~~~f~~Gl~~~~dg~-Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~----~~fgeGi~~~--g~~ly   79 (266)
T 2iwa_A            8 IVEVLNEF-PHDPYAFTQGLVYAENDT-LFESTGLYGRSSVRQVALQTGKVENIHKMDD----SYFGEGLTLL--NEKLY   79 (266)
T ss_dssp             EEEEEEEE-ECCTTCCEEEEEECSTTE-EEEEECSTTTCEEEEEETTTCCEEEEEECCT----TCCEEEEEEE--TTEEE
T ss_pred             CceEEEEE-ECCCCCCcccEEEeCCCe-EEEECCCCCCCEEEEEECCCCCEEEEEecCC----CcceEEEEEe--CCEEE
Confidence            34556666 4543  357999999864 4555443  6899999999887554443221    1122345554  45666


Q ss_pred             EEe-cCCeEEEEEccCCCccceeecc-c-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCC--C---cceE
Q 019059          185 AAT-CESSVQFWDLRSMGKTNSIEHA-H-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGH--T---HWTW  256 (346)
Q Consensus       185 ~~~-~d~~i~i~d~~~~~~~~~~~~~-~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~---~~v~  256 (346)
                      .+. .++.+.++|..+.+.+.++..+ . -..  +++++..+++ +..++.|.++|..+. +.+..+.-.  .   ..++
T Consensus        80 v~t~~~~~v~viD~~t~~v~~~i~~g~~~g~g--lt~Dg~~l~v-s~gs~~l~viD~~t~-~v~~~I~Vg~~~~p~~~~n  155 (266)
T 2iwa_A           80 QVVWLKNIGFIYDRRTLSNIKNFTHQMKDGWG--LATDGKILYG-SDGTSILYEIDPHTF-KLIKKHNVKYNGHRVIRLN  155 (266)
T ss_dssp             EEETTCSEEEEEETTTTEEEEEEECCSSSCCE--EEECSSSEEE-ECSSSEEEEECTTTC-CEEEEEECEETTEECCCEE
T ss_pred             EEEecCCEEEEEECCCCcEEEEEECCCCCeEE--EEECCCEEEE-ECCCCeEEEEECCCC-cEEEEEEECCCCcccccce
Confidence            665 5889999999999888887644 2 323  4456764554 456789999999874 345554421  1   1356


Q ss_pred             EEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccc-------------cceeeEEEeC
Q 019059          257 AVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDY-------------EDSVYGLAWS  323 (346)
Q Consensus       257 ~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~~~~  323 (346)
                      .+.|. ++ .+.+....++.|.+-|..+                   ++.+..+.-.             ......|+|+
T Consensus       156 ele~~-dg-~lyvn~~~~~~V~vID~~t-------------------g~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~  214 (266)
T 2iwa_A          156 ELEYI-NG-EVWANIWQTDCIARISAKD-------------------GTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWD  214 (266)
T ss_dssp             EEEEE-TT-EEEEEETTSSEEEEEETTT-------------------CCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEE
T ss_pred             eEEEE-CC-EEEEecCCCCeEEEEECCC-------------------CcEEEEEECCCcccccccccccccCceEEEEEc
Confidence            78887 67 6666666788999999998                   6655554321             1246899999


Q ss_pred             CCCCcEEEEeecCCeEEEeeec
Q 019059          324 SREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       324 ~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      |+++++++++.....+.+.++.
T Consensus       215 ~~~~~lfVTgk~~~~v~~i~l~  236 (266)
T 2iwa_A          215 QENKRIFVTGKLWPKLFEIKLH  236 (266)
T ss_dssp             TTTTEEEEEETTCSEEEEEEEE
T ss_pred             CCCCEEEEECCCCCeEEEEEEe
Confidence            9998899999888988887763

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.21  E-value=1.8e-09  Score=89.45  Aligned_cols=199  Identities=10%  Similarity=0.071  Sum_probs=124.0

Q ss_pred             eeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEE
Q 019059          114 AALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQ  193 (346)
Q Consensus       114 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  193 (346)
                      ..+...........|+++++.++++...++.|..|+.. ++ ...+..     +...+.+++++++++.+++...++.|.
T Consensus        38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~~~~~-----~~~~~~gl~~d~dG~l~v~~~~~~~v~  110 (305)
T 3dr2_A           38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VDVLLD-----ATAFTNGNAVDAQQRLVHCEHGRRAIT  110 (305)
T ss_dssp             EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EEEEEE-----SCSCEEEEEECTTSCEEEEETTTTEEE
T ss_pred             EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EEEEeC-----CCCccceeeECCCCCEEEEECCCCEEE
Confidence            34444555677899999998766666678999999874 33 222211     123678999999998555544567899


Q ss_pred             EEEccCCCccceee---cc---c-eeEEEeCCCCCcEEEE----ecC-------------CCeEEEEEcccCCcceeeec
Q 019059          194 FWDLRSMGKTNSIE---HA---H-VRNVDYDTKKKHLLVT----AAD-------------ESGIHLWDLRMLKAPIQELP  249 (346)
Q Consensus       194 i~d~~~~~~~~~~~---~~---~-v~~~~~~~~~~~~l~~----~~~-------------dg~i~i~d~~~~~~~~~~~~  249 (346)
                      +||.. ++. ..+.   .+   . ++.++++|+|. ++++    |..             .+.|..+|... +. +..+.
T Consensus       111 ~~~~~-g~~-~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~-g~-~~~~~  185 (305)
T 3dr2_A          111 RSDAD-GQA-HLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG-SP-LQRMA  185 (305)
T ss_dssp             EECTT-SCE-EEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS-CC-CEEEE
T ss_pred             EECCC-CCE-EEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCC-Cc-EEEEe
Confidence            99986 442 2221   11   1 77899999998 7775    332             24677777654 22 22233


Q ss_pred             CCCcceEEEEeCCCCCcEEEEecCC------CeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeC
Q 019059          250 GHTHWTWAVCCNPEYDGFILSAGTD------STVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWS  323 (346)
Q Consensus       250 ~~~~~v~~v~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  323 (346)
                       .....+.++|+|++ ..|+.+...      +.|.+|++....   .           ...+.....  ....+..++++
T Consensus       186 -~~~~p~gl~~spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~---l-----------~~~~~~~~~--~~~~pdgi~~d  247 (305)
T 3dr2_A          186 -DLDHPNGLAFSPDE-QTLYVSQTPEQGHGSVEITAFAWRDGA---L-----------HDRRHFASV--PDGLPDGFCVD  247 (305)
T ss_dssp             -EESSEEEEEECTTS-SEEEEEECCC---CCCEEEEEEEETTE---E-----------EEEEEEECC--SSSCCCSEEEC
T ss_pred             -cCCCCcceEEcCCC-CEEEEEecCCcCCCCCEEEEEEecCCC---c-----------cCCeEEEEC--CCCCCCeEEEC
Confidence             34556889999999 766666554      789999987510   0           000111111  12235678899


Q ss_pred             CCCCcEEEEeecCCeEEEeeec
Q 019059          324 SREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       324 ~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      ++|. +.++. .+ .|.+|+.+
T Consensus       248 ~~G~-lwv~~-~~-gv~~~~~~  266 (305)
T 3dr2_A          248 RGGW-LWSSS-GT-GVCVFDSD  266 (305)
T ss_dssp             TTSC-EEECC-SS-EEEEECTT
T ss_pred             CCCC-EEEec-CC-cEEEECCC
Confidence            9987 55444 34 48888764

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.18  E-value=1.7e-08  Score=85.83  Aligned_cols=208  Identities=15%  Similarity=0.181  Sum_probs=128.7

Q ss_pred             cCCCCcEEEEecCCeEEEEEcCCCCCCceeeecc-------cCCCceeeEEEEeCCCCCcEEEEecC------CeEEEEE
Q 019059          130 SSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQ-------SSGMLHYLSGGAWDPHDVNAVAATCE------SSVQFWD  196 (346)
Q Consensus       130 ~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~i~d  196 (346)
                      .+.+++++.+..++.|.++|+.+.....++....       ..+ ......+...|++ .+++...+      +.|.++|
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g-~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD  170 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSG-YSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLD  170 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHC-EEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEEC
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccC-CCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEE
Confidence            7788766666678999999997542222222111       001 1245667888999 55555444      7899999


Q ss_pred             ccCCCccceeeccc-----eeEEEeCCCCCcEEEEec-------------------CCCeEEEEEcccCCcceeeecCC-
Q 019059          197 LRSMGKTNSIEHAH-----VRNVDYDTKKKHLLVTAA-------------------DESGIHLWDLRMLKAPIQELPGH-  251 (346)
Q Consensus       197 ~~~~~~~~~~~~~~-----v~~~~~~~~~~~~l~~~~-------------------~dg~i~i~d~~~~~~~~~~~~~~-  251 (346)
                      ..+.+.+..+..+.     ...+.|+|+++ .+++..                   ...+|.+||+.+ .+.+.++..- 
T Consensus       171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~-~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~-~k~~~tI~vg~  248 (462)
T 2ece_A          171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNE-VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK-RKRIHSLTLGE  248 (462)
T ss_dssp             TTTCCEEEECCSBCTTCCCCCCEEEETTTT-EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT-TEEEEEEESCT
T ss_pred             CCCCeEEEEEccCCCCccccceEEECCCCC-EEEEccCcCccccccccchhhhhhccCCEEEEEECCC-CcEeeEEecCC
Confidence            99999888876432     55688899998 676663                   367999999987 5566666542 


Q ss_pred             -CcceEEEEe--CCCCCcEEEEec------CCCeEEEEecCCCCCCCCCcccccCCccccccccc----cccccccceee
Q 019059          252 -THWTWAVCC--NPEYDGFILSAG------TDSTVNLWLVSTSNHDELPSESLVESPNQRANSLL----NSYSDYEDSVY  318 (346)
Q Consensus       252 -~~~v~~v~~--~~~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~  318 (346)
                       ......+.|  +|++ +++++++      .+++|.+|....+  ...........+.+... .+    ..+.+-...+.
T Consensus       249 ~g~~P~~i~f~~~Pdg-~~aYV~~e~~~~~Lss~V~v~~~d~g--~~~~~~vIdi~~~~v~~-~lp~~~~~f~~~~~~pa  324 (462)
T 2ece_A          249 ENRMALELRPLHDPTK-LMGFINMVVSLKDLSSSIWLWFYEDG--KWNAEKVIEIPAEPLEG-NLPEILKPFKAVPPLVT  324 (462)
T ss_dssp             TEEEEEEEEECSSTTC-CEEEEEEEEETTTCCEEEEEEEEETT--EEEEEEEEEECCEECCS-SCCGGGGGGTEECCCCC
T ss_pred             CCCccceeEeeECCCC-CEEEEEEeeeccCCCceEEEEEecCC--ceeEEEEEeCCCccccc-cccccccccccCCCcee
Confidence             133455555  9999 6666655      5668887766431  00000000000000000 00    01111123478


Q ss_pred             EEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          319 GLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       319 ~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      .|.++||++++.++.-..+.|.+|++.
T Consensus       325 ~I~lS~DGrfLYVSnrg~d~VavfdV~  351 (462)
T 2ece_A          325 DIDISLDDKFLYLSLWGIGEVRQYDIS  351 (462)
T ss_dssp             CEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred             EEEECCCCCEEEEEeCCCCEEEEEEec
Confidence            899999999888888889999999974

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.17  E-value=9.5e-09  Score=82.07  Aligned_cols=198  Identities=7%  Similarity=-0.083  Sum_probs=135.9

Q ss_pred             cccc--ceEEeeecCCCCceEEEEeecC-CcceEEEEecCcccCCCCCccceeeeeeeccCC-ceEEEEeecCCCCcEEE
Q 019059           63 SHPN--EIWDLSSCPFDQRIFSTVFSTG-ESYGAAIWQIPELYGQLNSPQLERIAALDAHVG-KINCVLWWSSGRHDKLV  138 (346)
Q Consensus        63 ~h~~--~v~~~~~~~~~~~l~~~~~~~~-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~  138 (346)
                      .|..  ....+.|+|++ .|..+.  +. .++.|.+.|+.         +++.+..+..... ....+++  ++..++++
T Consensus        16 p~~~~~f~~Gl~~~~dg-~Lyvst--g~~~~s~v~~iD~~---------tg~v~~~i~l~~~~fgeGi~~--~g~~lyv~   81 (266)
T 2iwa_A           16 PHDPYAFTQGLVYAEND-TLFEST--GLYGRSSVRQVALQ---------TGKVENIHKMDDSYFGEGLTL--LNEKLYQV   81 (266)
T ss_dssp             ECCTTCCEEEEEECSTT-EEEEEE--CSTTTCEEEEEETT---------TCCEEEEEECCTTCCEEEEEE--ETTEEEEE
T ss_pred             ECCCCCCcccEEEeCCC-eEEEEC--CCCCCCEEEEEECC---------CCCEEEEEecCCCcceEEEEE--eCCEEEEE
Confidence            4553  35799999985 555542  21 25789999998         6777776643221 1223444  45555556


Q ss_pred             EecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeecc---c----e
Q 019059          139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA---H----V  211 (346)
Q Consensus       139 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---~----v  211 (346)
                      .-.++.+.++|..+.+....+...  ..   .  ...++++++.++++..++.|.++|..+.+....+..+   .    +
T Consensus        82 t~~~~~v~viD~~t~~v~~~i~~g--~~---~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~  154 (266)
T 2iwa_A           82 VWLKNIGFIYDRRTLSNIKNFTHQ--MK---D--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRL  154 (266)
T ss_dssp             ETTCSEEEEEETTTTEEEEEEECC--SS---S--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred             EecCCEEEEEECCCCcEEEEEECC--CC---C--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccc
Confidence            566899999999876544443222  01   1  2334557888888877899999999998877776632   1    6


Q ss_pred             eEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCC-------------CcceEEEEeCCCCCcEEEEecCCCeEE
Q 019059          212 RNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGH-------------THWTWAVCCNPEYDGFILSAGTDSTVN  278 (346)
Q Consensus       212 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------------~~~v~~v~~~~~~~~~l~s~~~d~~i~  278 (346)
                      +.+.|. ++. +++....++.|.+.|..+ .+.+..+...             ....+.|+|+|++.++++++...+.|.
T Consensus       155 nele~~-dg~-lyvn~~~~~~V~vID~~t-g~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~  231 (266)
T 2iwa_A          155 NELEYI-NGE-VWANIWQTDCIARISAKD-GTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLF  231 (266)
T ss_dssp             EEEEEE-TTE-EEEEETTSSEEEEEETTT-CCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEE
T ss_pred             eeEEEE-CCE-EEEecCCCCeEEEEECCC-CcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEE
Confidence            788888 664 676666778999999997 4456655421             135589999999867888888889999


Q ss_pred             EEecCC
Q 019059          279 LWLVST  284 (346)
Q Consensus       279 iwd~~~  284 (346)
                      ..++..
T Consensus       232 ~i~l~~  237 (266)
T 2iwa_A          232 EIKLHL  237 (266)
T ss_dssp             EEEEEE
T ss_pred             EEEEec
Confidence            998876

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.13  E-value=1.1e-07  Score=77.08  Aligned_cols=196  Identities=9%  Similarity=-0.037  Sum_probs=123.9

Q ss_pred             CceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEe-cCCeEEEEEccC
Q 019059          121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT-CESSVQFWDLRS  199 (346)
Q Consensus       121 ~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~  199 (346)
                      ..+..++|++++..++++....+.|..++++.... ......    ......+++++|++..++.+. ..+.|.++++..
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~~~~----~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g  110 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTIIRQ----DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG  110 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEEECT----TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-EEEEEC----CCCCccEEEEEecCCeEEEEECCCCEEEEEEcCC
Confidence            45789999998776566656678999999875432 222211    113578899999777776665 467999999875


Q ss_pred             CCccceeecc-c-eeEEEeCCCCCcEEEEecC--CCeEEEEEcccCCcceeeec-CCCcceEEEEeCCCCCcEEEEecCC
Q 019059          200 MGKTNSIEHA-H-VRNVDYDTKKKHLLVTAAD--ESGIHLWDLRMLKAPIQELP-GHTHWTWAVCCNPEYDGFILSAGTD  274 (346)
Q Consensus       200 ~~~~~~~~~~-~-v~~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~-~~~~~v~~v~~~~~~~~~l~s~~~d  274 (346)
                      .........+ . ...++++|++..++++...  .+.|..+++.. . ....+. ........++++|++..+.++-...
T Consensus       111 ~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~-~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~  188 (267)
T 1npe_A          111 TQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-T-NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGT  188 (267)
T ss_dssp             CSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-C-CCEEEECTTCSCEEEEEEETTTTEEEEEETTT
T ss_pred             CCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-C-CcEEEEECCCCCCcEEEEcCCCCEEEEEECCC
Confidence            4332222222 2 8999999976545555443  46888888763 2 222222 2234678899999873555666667


Q ss_pred             CeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          275 STVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       275 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      +.|.++|...                   ......+... .....++..  +..++++....+.|.+++.+
T Consensus       189 ~~I~~~~~~g-------------------~~~~~~~~~~-~~P~gi~~d--~~~lyva~~~~~~v~~~d~~  237 (267)
T 1npe_A          189 HRAECLNPAQ-------------------PGRRKVLEGL-QYPFAVTSY--GKNLYYTDWKTNSVIAMDLA  237 (267)
T ss_dssp             TEEEEEETTE-------------------EEEEEEEECC-CSEEEEEEE--TTEEEEEETTTTEEEEEETT
T ss_pred             CEEEEEecCC-------------------CceEEEecCC-CCceEEEEe--CCEEEEEECCCCeEEEEeCC
Confidence            8999999875                   2221112221 223556654  34466666667888888764

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.09  E-value=1.6e-08  Score=79.80  Aligned_cols=190  Identities=12%  Similarity=0.097  Sum_probs=121.3

Q ss_pred             eeeeeeeccCCc--eEEEEeecCCCCcEEEEecCC--eEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEE
Q 019059          111 ERIAALDAHVGK--INCVLWWSSGRHDKLVSIDEE--NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAA  186 (346)
Q Consensus       111 ~~~~~~~~~~~~--i~~~~~~~~~~~~~~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  186 (346)
                      +.+.++ .|...  ...+.|+ ++ .++.+++.+|  .|+++|+.+++.........    ...-.+++.  ++..++..
T Consensus        32 ~vv~~~-phd~~~ftqGL~~~-~~-~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~----~~FgeGit~--~g~~ly~l  102 (262)
T 3nol_A           32 QIVHSY-PHDTKAFTEGFFYR-NG-YFYESTGLNGRSSIRKVDIESGKTLQQIELGK----RYFGEGISD--WKDKIVGL  102 (262)
T ss_dssp             EEEEEE-ECCTTCEEEEEEEE-TT-EEEEEEEETTEEEEEEECTTTCCEEEEEECCT----TCCEEEEEE--ETTEEEEE
T ss_pred             EEEEEe-cCCCCcccceEEEE-CC-EEEEECCCCCCceEEEEECCCCcEEEEEecCC----ccceeEEEE--eCCEEEEE
Confidence            445555 45433  4788888 55 4566667665  89999999887655543321    001223444  35566665


Q ss_pred             e-cCCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecC--CC---cceEEEE
Q 019059          187 T-CESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG--HT---HWTWAVC  259 (346)
Q Consensus       187 ~-~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~---~~v~~v~  259 (346)
                      . .++.+.+||..+.+.+.++..+. -..++  +++. .|+.+..++.|.++|..+.+ .+..+..  ..   ..++.+.
T Consensus       103 tw~~~~v~v~D~~t~~~~~ti~~~~eG~glt--~dg~-~L~~SdGs~~i~~iDp~T~~-v~~~I~V~~~g~~~~~lNELe  178 (262)
T 3nol_A          103 TWKNGLGFVWNIRNLRQVRSFNYDGEGWGLT--HNDQ-YLIMSDGTPVLRFLDPESLT-PVRTITVTAHGEELPELNELE  178 (262)
T ss_dssp             ESSSSEEEEEETTTCCEEEEEECSSCCCCEE--ECSS-CEEECCSSSEEEEECTTTCS-EEEEEECEETTEECCCEEEEE
T ss_pred             EeeCCEEEEEECccCcEEEEEECCCCceEEe--cCCC-EEEEECCCCeEEEEcCCCCe-EEEEEEeccCCccccccceeE
Confidence            5 58899999999999988887443 23333  4566 45554557889999998743 4555442  12   2345577


Q ss_pred             eCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccccc------------ccceeeEEEeCCCCC
Q 019059          260 CNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD------------YEDSVYGLAWSSREP  327 (346)
Q Consensus       260 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~  327 (346)
                      |. +| .+.+..-.++.|.+.|.++                   ++.+..+.-            .....+.|+|+|+++
T Consensus       179 ~~-~G-~lyan~w~~~~I~vIDp~t-------------------G~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~  237 (262)
T 3nol_A          179 WV-DG-EIFANVWQTNKIVRIDPET-------------------GKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHH  237 (262)
T ss_dssp             EE-TT-EEEEEETTSSEEEEECTTT-------------------CBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTT
T ss_pred             EE-CC-EEEEEEccCCeEEEEECCC-------------------CcEEEEEECCcCccccccccCcCCceEEEEEcCCCC
Confidence            76 67 6666666688999999988                   444433321            123468999999988


Q ss_pred             cEEEEee
Q 019059          328 WIFASLS  334 (346)
Q Consensus       328 ~~l~s~~  334 (346)
                      +++++|-
T Consensus       238 ~lfVTGK  244 (262)
T 3nol_A          238 RLFVTGK  244 (262)
T ss_dssp             EEEEEET
T ss_pred             EEEEECC
Confidence            7777764

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.06  E-value=2.6e-08  Score=91.49  Aligned_cols=184  Identities=8%  Similarity=-0.032  Sum_probs=116.5

Q ss_pred             EEEeecCCCCcEEEEecCC-------------------eEEEEEcCCCCCCceeeecccCC----CceeeEEEEeCCCC-
Q 019059          125 CVLWWSSGRHDKLVSIDEE-------------------NIFLWSLDCSNKNAQVQSKQSSG----MLHYLSGGAWDPHD-  180 (346)
Q Consensus       125 ~~~~~~~~~~~~~~~~~d~-------------------~i~vwd~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~-  180 (346)
                      .+++++++.. ++++..++                   .|..+|..+++............    ......-+....+| 
T Consensus       247 ~~~~d~~~~~-vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~  325 (677)
T 1kb0_A          247 SMTFDAELNT-MYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGK  325 (677)
T ss_dssp             CEEEETTTTE-EEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTE
T ss_pred             ceeEcCCCCE-EEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCc
Confidence            5678888774 55443332                   59999999887666655422110    01112222233356 


Q ss_pred             --CcEEEEecCCeEEEEEccCCCccceeeccc-------------------------------------eeEEEeCCCCC
Q 019059          181 --VNAVAATCESSVQFWDLRSMGKTNSIEHAH-------------------------------------VRNVDYDTKKK  221 (346)
Q Consensus       181 --~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-------------------------------------v~~~~~~~~~~  221 (346)
                        ..++.++.+|.++++|.++++.+..+....                                     -..++++|++.
T Consensus       326 ~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~  405 (677)
T 1kb0_A          326 PRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTG  405 (677)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTT
T ss_pred             EeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCC
Confidence              567888889999999999998765543211                                     12568888887


Q ss_pred             cEEEEecC-------------------------------------------CCeEEEEEcccCCcceeeecCCCcceEEE
Q 019059          222 HLLVTAAD-------------------------------------------ESGIHLWDLRMLKAPIQELPGHTHWTWAV  258 (346)
Q Consensus       222 ~~l~~~~~-------------------------------------------dg~i~i~d~~~~~~~~~~~~~~~~~v~~v  258 (346)
                       ++++...                                           .+.|..||+.+ .+.+-.+. +..++...
T Consensus       406 -~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~t-G~~~W~~~-~~~~~~~g  482 (677)
T 1kb0_A          406 -LVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVA-QKAAWSVE-HVSPWNGG  482 (677)
T ss_dssp             -EEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTT-TEEEEEEE-ESSSCCCC
T ss_pred             -EEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCC-CcEEeecC-CCCCCcCc
Confidence             5655422                                           27899999987 44454444 33344445


Q ss_pred             EeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccccccc-ceeeEEEeCCCCCcEEEE
Q 019059          259 CCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYE-DSVYGLAWSSREPWIFAS  332 (346)
Q Consensus       259 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s  332 (346)
                      .+...+ .+++.++.|+.+++||.++                   ++.+..+.... ....-+.|.++|+.+++.
T Consensus       483 ~~~~~g-~~v~~g~~dg~l~a~D~~t-------------------G~~lw~~~~~~~~~~~p~~y~~~G~~~v~~  537 (677)
T 1kb0_A          483 TLTTAG-NVVFQGTADGRLVAYHAAT-------------------GEKLWEAPTGTGVVAAPSTYMVDGRQYVSV  537 (677)
T ss_dssp             EEEETT-TEEEEECTTSEEEEEETTT-------------------CCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             ceEeCC-CEEEEECCCCcEEEEECCC-------------------CceeeeeeCCCCcccCCEEEEeCCEEEEEE
Confidence            566677 7888889999999999998                   88877765332 222345666778644444

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.06  E-value=1.8e-07  Score=78.00  Aligned_cols=238  Identities=9%  Similarity=0.040  Sum_probs=139.6

Q ss_pred             ceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeee--------------------ccCCceEEE
Q 019059           67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD--------------------AHVGKINCV  126 (346)
Q Consensus        67 ~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~i~~~  126 (346)
                      ...+++|.+++..+.+.    ..++.|..|+..         ... +..+.                    .....+..+
T Consensus        20 ~p~~i~~d~~g~~l~v~----~~~~~i~~~~~~---------~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi   85 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTS----VQDGRVIKYEGP---------NSG-FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDI   85 (322)
T ss_dssp             CCCCEECCTTCSSEEEE----CTTSEEEEECCT---------TTC-EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEE
T ss_pred             CceEEEEcCCCCEEEEE----cCCCeEEEECCC---------CCc-eEEEecccccccccccccccchhccccCCCCceE
Confidence            45678899987766664    467788888865         111 11111                    011357889


Q ss_pred             Eeec-CCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCC-CCCcEEEEec----------------
Q 019059          127 LWWS-SGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDP-HDVNAVAATC----------------  188 (346)
Q Consensus       127 ~~~~-~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~----------------  188 (346)
                      ++.+ ++.  ++++...+.|..+|..++. ...+..............+++.+ ++...++...                
T Consensus        86 ~~~~~~g~--l~v~d~~~~i~~~d~~~g~-~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~  162 (322)
T 2fp8_A           86 SYNLQNNQ--LYIVDCYYHLSVVGSEGGH-ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSD  162 (322)
T ss_dssp             EEETTTTE--EEEEETTTEEEEECTTCEE-CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTC
T ss_pred             EEcCCCCc--EEEEECCCCEEEEeCCCCE-EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccC
Confidence            9997 665  4544334558888876432 11121111111112467899999 8865555422                


Q ss_pred             -CCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCC-cceeeecCCCcceEEEEeCCCCC
Q 019059          189 -ESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK-APIQELPGHTHWTWAVCCNPEYD  265 (346)
Q Consensus       189 -d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~v~~~~~~~  265 (346)
                       ++.|..+|..+++......... ...++++|++..++++-...+.|.+|++.... .....+..... ...+++.++| 
T Consensus       163 ~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G-  240 (322)
T 2fp8_A          163 KTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADG-  240 (322)
T ss_dssp             CCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTS-
T ss_pred             CCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCC-
Confidence             3678889987665432222112 78999999997455555667899999987421 11222221223 7789999999 


Q ss_pred             cEEEEecC----------CCeEEEEecCCCCCCCCCcccccCCccccccccccccccc----cceeeEEEeCCCCCcEEE
Q 019059          266 GFILSAGT----------DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDY----EDSVYGLAWSSREPWIFA  331 (346)
Q Consensus       266 ~~l~s~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~  331 (346)
                      .+.++...          .+.|..+|..                    ++.+..+...    -..++.+.+. ++ .+++
T Consensus       241 ~l~va~~~~~~~~~~~~~~~~v~~~d~~--------------------G~~~~~~~~~~g~~~~~~~~~~~~-~g-~L~v  298 (322)
T 2fp8_A          241 HFWVSSSEELDGNMHGRVDPKGIKFDEF--------------------GNILEVIPLPPPFAGEHFEQIQEH-DG-LLYI  298 (322)
T ss_dssp             CEEEEEEEETTSSTTSCEEEEEEEECTT--------------------SCEEEEEECCTTTTTSCCCEEEEE-TT-EEEE
T ss_pred             CEEEEecCcccccccCCCccEEEEECCC--------------------CCEEEEEECCCCCccccceEEEEe-CC-EEEE
Confidence            66555443          3567777764                    2333333221    1335666663 45 4777


Q ss_pred             EeecCCeEEEeeec
Q 019059          332 SLSYDGRVRNHMLE  345 (346)
Q Consensus       332 s~~~d~~v~vw~~~  345 (346)
                      +....+.|.+++++
T Consensus       299 ~~~~~~~i~~~~~~  312 (322)
T 2fp8_A          299 GTLFHGSVGILVYD  312 (322)
T ss_dssp             ECSSCSEEEEEEC-
T ss_pred             eecCCCceEEEecc
Confidence            77778899998875

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.06  E-value=7.7e-11  Score=100.35  Aligned_cols=174  Identities=11%  Similarity=-0.000  Sum_probs=93.9

Q ss_pred             cEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---e
Q 019059          135 DKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---V  211 (346)
Q Consensus       135 ~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v  211 (346)
                      .+++++.|+.|+.||..+++...+... .      .+.+..+..++..+++++.|+.|+.||..+++.+..+....   +
T Consensus        11 ~v~~gs~dg~v~a~d~~tG~~~W~~~~-~------~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~   83 (369)
T 2hz6_A           11 LLFVSTLDGSLHAVSKRTGSIKWTLKE-D------PVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV   83 (369)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEEC-C------CSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHH
T ss_pred             EEEEEcCCCEEEEEECCCCCEEEEecC-C------CceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccc
Confidence            377778899999999998876655543 1      33344455567777777889999999999888765543211   2


Q ss_pred             e-EEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCC
Q 019059          212 R-NVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDEL  290 (346)
Q Consensus       212 ~-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  290 (346)
                      . +..+. .+. .+++++.++.++.||.++ ++.+..+..+.    ...++|++ ..+++++.|+.|+.||.++      
T Consensus        84 ~~sp~~~-~~~-~v~~g~~dg~v~a~D~~t-G~~~w~~~~~~----~~~~~p~~-~~v~~~~~dg~v~a~d~~t------  149 (369)
T 2hz6_A           84 QASPCRS-SDG-ILYMGKKQDIWYVIDLLT-GEKQQTLSSAF----ADSLSPST-SLLYLGRTEYTITMYDTKT------  149 (369)
T ss_dssp             TTCSCC-------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSS------
T ss_pred             ccCceEe-cCC-EEEEEeCCCEEEEEECCC-CcEEEEecCCC----cccccccC-CEEEEEecCCEEEEEECCC------
Confidence            1 11221 233 577788889999999987 44555554432    23466777 8889999999999999998      


Q ss_pred             CcccccCCccccccccccccccccceeeEEEeCCCC---CcEEEEeecCCeEEEeeec
Q 019059          291 PSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSRE---PWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~s~~~d~~v~vw~~~  345 (346)
                                   ++.+..+..+.  .....+.++.   . .++.++.|+.|+.||.+
T Consensus       150 -------------G~~~W~~~~~~--~~~~~~~~~~~~~~-~v~~~~~dg~v~a~d~~  191 (369)
T 2hz6_A          150 -------------RELRWNATYFD--YAASLPEDDVDYKM-SHFVSNGDGLVVTVDSE  191 (369)
T ss_dssp             -------------SSCCCEEEEEE--ECCBCCCCCTTCCC-CEEEEETSCEEEEECTT
T ss_pred             -------------CCEEEeEeccc--ccCccccCCccccc-eEEEECCCCEEEEEECC
Confidence                         55544433211  2333444421   3 45667888999998864

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.05  E-value=1.5e-08  Score=89.28  Aligned_cols=202  Identities=13%  Similarity=0.057  Sum_probs=128.5

Q ss_pred             cCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEe-C-CCCCcEEEEe------------------cC
Q 019059          130 SSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAW-D-PHDVNAVAAT------------------CE  189 (346)
Q Consensus       130 ~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~l~~~~------------------~d  189 (346)
                      +||+++++....+..|.+.|+.+.+....+ .... +  .....+++ + |+++++++++                  .+
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii-~ip~-g--~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~  174 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAIL-EIPN-A--KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYV  174 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEE-ECSS-C--CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEE-eCCC-C--CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccC
Confidence            489986666566789999999976543322 2111 1  15678887 5 8999998885                  24


Q ss_pred             CeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCC-------------------------------------C
Q 019059          190 SSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADE-------------------------------------S  231 (346)
Q Consensus       190 ~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~d-------------------------------------g  231 (346)
                      +.+.+.|..+.+...++.-+. ...++++|+|.+.+++....                                     +
T Consensus       175 ~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~  254 (595)
T 1fwx_A          175 NVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN  254 (595)
T ss_dssp             EEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred             ceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEEC
Confidence            679999999988777776433 67788999998444444322                                     1


Q ss_pred             eEEEEEccc--CCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccc
Q 019059          232 GIHLWDLRM--LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNS  309 (346)
Q Consensus       232 ~i~i~d~~~--~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (346)
                      .|.+.|.++  ....+..+.. .....++.++|||...++++..+.+|.++|+.+.....       ...-......+..
T Consensus       255 ~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~-------~~~l~~~~~v~~~  326 (595)
T 1fwx_A          255 GVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVF-------YENADPRSAVVAE  326 (595)
T ss_dssp             TEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHH-------HSCCCGGGGEEEC
T ss_pred             cEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccc-------ccccCcccceEEE
Confidence            355666654  1111223321 23457789999994455556678899999999610000       0000000112223


Q ss_pred             cccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          310 YSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       310 ~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      ...- .....++|+|+| +..++.-.|++|.+|+++
T Consensus       327 v~vG-~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~  360 (595)
T 1fwx_A          327 PELG-LGPLHTAFDGRG-NAYTSLFLDSQVVKWNIE  360 (595)
T ss_dssp             CBCC-SCEEEEEECTTS-EEEEEETTTTEEEEEEHH
T ss_pred             cCCC-CCcceEEECCCC-eEEEEEecCCcEEEEEhh
Confidence            3222 347889999999 688889999999999975

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.04  E-value=3.2e-08  Score=78.13  Aligned_cols=185  Identities=10%  Similarity=0.085  Sum_probs=124.9

Q ss_pred             eccccc--eEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEE
Q 019059           62 FSHPNE--IWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS  139 (346)
Q Consensus        62 ~~h~~~--v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  139 (346)
                      +.|...  ...+.|+.  ..|..+   .|.++.|+++|++         +++.+..+ - ..........+++..++++.
T Consensus        49 ~phd~~~ftqGL~~~~--~~Ly~s---tG~~g~v~~iD~~---------Tgkv~~~~-l-~~~~FgeGit~~g~~Ly~lt  112 (268)
T 3nok_A           49 YPHATNAFTQGLVFHQ--GHFFES---TGHQGTLRQLSLE---------SAQPVWME-R-LGNIFAEGLASDGERLYQLT  112 (268)
T ss_dssp             EECCTTCCEEEEEEET--TEEEEE---ETTTTEEEECCSS---------CSSCSEEE-E-CTTCCEEEEEECSSCEEEEE
T ss_pred             EcCCCccccceEEEEC--CEEEEE---cCCCCEEEEEECC---------CCcEEeEE-C-CCCcceeEEEEeCCEEEEEE
Confidence            345533  46888873  455555   3788889999998         66666665 2 23444433455667667776


Q ss_pred             ecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc-------ee
Q 019059          140 IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-------VR  212 (346)
Q Consensus       140 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-------v~  212 (346)
                      -.++.+.+||..+.+...++....      .-..++  ++++.|+.+..++.|.++|..+.+....+....       ++
T Consensus       113 w~~~~v~V~D~~Tl~~~~ti~~~~------eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lN  184 (268)
T 3nok_A          113 WTEGLLFTWSGMPPQRERTTRYSG------EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELIN  184 (268)
T ss_dssp             SSSCEEEEEETTTTEEEEEEECSS------CCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred             ccCCEEEEEECCcCcEEEEEeCCC------ceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccccccc
Confidence            678999999999766554443321      223444  467888888778999999999998877765321       67


Q ss_pred             EEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecC-------------CCcceEEEEeCCCCCcEEEEecC
Q 019059          213 NVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG-------------HTHWTWAVCCNPEYDGFILSAGT  273 (346)
Q Consensus       213 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------~~~~v~~v~~~~~~~~~l~s~~~  273 (346)
                      .+.|. +|. +++..-.+..|.+.|.++ ++.+..+..             -..-.+.|+++|++.++++||-.
T Consensus       185 eLe~~-dG~-lyanvw~s~~I~vIDp~T-G~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~  255 (268)
T 3nok_A          185 ELECA-NGV-IYANIWHSSDVLEIDPAT-GTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL  255 (268)
T ss_dssp             EEEEE-TTE-EEEEETTCSEEEEECTTT-CBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred             ccEEe-CCE-EEEEECCCCeEEEEeCCC-CcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence            78887 665 776666778999999987 444444432             12356899999988566676643

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.02  E-value=3.8e-08  Score=77.69  Aligned_cols=185  Identities=8%  Similarity=0.050  Sum_probs=122.9

Q ss_pred             eccccc--eEEeeecCCCCceEEEEeecCCc--ceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEE
Q 019059           62 FSHPNE--IWDLSSCPFDQRIFSTVFSTGES--YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKL  137 (346)
Q Consensus        62 ~~h~~~--v~~~~~~~~~~~l~~~~~~~~~d--~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  137 (346)
                      +.|...  ...+.|+ ++ .|..+.   |.+  ..|+++|++         +++.+..+... .........+++..+++
T Consensus        37 ~phd~~~ftqGL~~~-~~-~Lyest---G~~g~S~v~~vD~~---------Tgkv~~~~~l~-~~~FgeGit~~g~~ly~  101 (262)
T 3nol_A           37 YPHDTKAFTEGFFYR-NG-YFYEST---GLNGRSSIRKVDIE---------SGKTLQQIELG-KRYFGEGISDWKDKIVG  101 (262)
T ss_dssp             EECCTTCEEEEEEEE-TT-EEEEEE---EETTEEEEEEECTT---------TCCEEEEEECC-TTCCEEEEEEETTEEEE
T ss_pred             ecCCCCcccceEEEE-CC-EEEEEC---CCCCCceEEEEECC---------CCcEEEEEecC-CccceeEEEEeCCEEEE
Confidence            355543  3788998 45 444442   444  489999998         67777776543 34445444455666666


Q ss_pred             EEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeecc---c----
Q 019059          138 VSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA---H----  210 (346)
Q Consensus       138 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---~----  210 (346)
                      +.-.++.+.++|..+.+...++....        ....+++++..|+.+..++.|.++|..+.+....+...   .    
T Consensus       102 ltw~~~~v~v~D~~t~~~~~ti~~~~--------eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~  173 (262)
T 3nol_A          102 LTWKNGLGFVWNIRNLRQVRSFNYDG--------EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPE  173 (262)
T ss_dssp             EESSSSEEEEEETTTCCEEEEEECSS--------CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCC
T ss_pred             EEeeCCEEEEEECccCcEEEEEECCC--------CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccc
Confidence            66668999999999876555444321        22233356788888777888999999999887776532   2    


Q ss_pred             eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCC------------CcceEEEEeCCCCCcEEEEec
Q 019059          211 VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGH------------THWTWAVCCNPEYDGFILSAG  272 (346)
Q Consensus       211 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------------~~~v~~v~~~~~~~~~l~s~~  272 (346)
                      ++.+.|. +|. +++..-.+..|.+.|.++ .+.+..+...            ....+.|+|+|++.+++++|-
T Consensus       174 lNELe~~-~G~-lyan~w~~~~I~vIDp~t-G~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          174 LNELEWV-DGE-IFANVWQTNKIVRIDPET-GKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             EEEEEEE-TTE-EEEEETTSSEEEEECTTT-CBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             cceeEEE-CCE-EEEEEccCCeEEEEECCC-CcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            6678886 665 676666778999999987 4455444321            135689999999845555553

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.01  E-value=5.2e-08  Score=76.93  Aligned_cols=189  Identities=12%  Similarity=0.018  Sum_probs=123.8

Q ss_pred             eeeeeeeccCCc--eEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEe-
Q 019059          111 ERIAALDAHVGK--INCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT-  187 (346)
Q Consensus       111 ~~~~~~~~~~~~--i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-  187 (346)
                      +.+.++ .|...  ...+.|+  +..++.+++.++.|+++|+.+++..... ...    ...-.++++.  +..|+... 
T Consensus        44 ~Vv~~~-phd~~~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~----~~FgeGit~~--g~~Ly~ltw  113 (268)
T 3nok_A           44 HIIREY-PHATNAFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RLG----NIFAEGLASD--GERLYQLTW  113 (268)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-ECT----TCCEEEEEEC--SSCEEEEES
T ss_pred             EEEEEE-cCCCccccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC----CcceeEEEEe--CCEEEEEEc
Confidence            444555 45433  4678886  3445666688899999999998876666 322    0012335553  45555554 


Q ss_pred             cCCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecC--CCc---ceEEEEeC
Q 019059          188 CESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG--HTH---WTWAVCCN  261 (346)
Q Consensus       188 ~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~---~v~~v~~~  261 (346)
                      .++.+.+||..+.+.+.++..+. -..++  +++. .|+.+..++.|+++|..+. +.+..+.-  +..   .++.+.|.
T Consensus       114 ~~~~v~V~D~~Tl~~~~ti~~~~eGwGLt--~Dg~-~L~vSdGs~~l~~iDp~T~-~v~~~I~V~~~g~~v~~lNeLe~~  189 (268)
T 3nok_A          114 TEGLLFTWSGMPPQRERTTRYSGEGWGLC--YWNG-KLVRSDGGTMLTFHEPDGF-ALVGAVQVKLRGQPVELINELECA  189 (268)
T ss_dssp             SSCEEEEEETTTTEEEEEEECSSCCCCEE--EETT-EEEEECSSSEEEEECTTTC-CEEEEEECEETTEECCCEEEEEEE
T ss_pred             cCCEEEEEECCcCcEEEEEeCCCceeEEe--cCCC-EEEEECCCCEEEEEcCCCC-eEEEEEEeCCCCcccccccccEEe
Confidence            58999999999999888887433 33444  4566 4555556889999998874 34555442  222   34667776


Q ss_pred             CCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccccc-------------ccceeeEEEeCCCCCc
Q 019059          262 PEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD-------------YEDSVYGLAWSSREPW  328 (346)
Q Consensus       262 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~  328 (346)
                       +| .+.+..-.++.|.+-|.++                   ++.+..+.-             .....+.|+|+|++++
T Consensus       190 -dG-~lyanvw~s~~I~vIDp~T-------------------G~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~r  248 (268)
T 3nok_A          190 -NG-VIYANIWHSSDVLEIDPAT-------------------GTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGR  248 (268)
T ss_dssp             -TT-EEEEEETTCSEEEEECTTT-------------------CBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCC
T ss_pred             -CC-EEEEEECCCCeEEEEeCCC-------------------CcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCE
Confidence             67 6666665678999999988                   554443321             1234689999999887


Q ss_pred             EEEEee
Q 019059          329 IFASLS  334 (346)
Q Consensus       329 ~l~s~~  334 (346)
                      ++++|-
T Consensus       249 lfVTGK  254 (268)
T 3nok_A          249 IFMTGK  254 (268)
T ss_dssp             EEEEET
T ss_pred             EEEeCC
Confidence            888774

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.00  E-value=3.2e-10  Score=96.52  Aligned_cols=182  Identities=9%  Similarity=-0.056  Sum_probs=94.0

Q ss_pred             CCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCC
Q 019059           76 FDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNK  155 (346)
Q Consensus        76 ~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~  155 (346)
                      ++..++++    +.|+.|..||..         +++.+-.+..  +.+.+..+..++. ++++++.|+.|+.||..+++.
T Consensus         8 ~~~~v~~g----s~dg~v~a~d~~---------tG~~~W~~~~--~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~~tG~~   71 (369)
T 2hz6_A            8 PETLLFVS----TLDGSLHAVSKR---------TGSIKWTLKE--DPVLQVPTHVEEP-AFLPDPNDGSLYTLGSKNNEG   71 (369)
T ss_dssp             CTTEEEEE----ETTSEEEEEETT---------TCCEEEEEEC--CCSCCCC-----C-CEEECTTTCCEEEC-----CC
T ss_pred             eCCEEEEE----cCCCEEEEEECC---------CCCEEEEecC--CCceecceEcCCC-EEEEeCCCCEEEEEECCCCce
Confidence            35566664    578899999988         6666666654  4555555666665 356657899999999987765


Q ss_pred             CceeeecccCCCceeeE-EEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccceeEEEeCCCCCcEEEEecCCCeEE
Q 019059          156 NAQVQSKQSSGMLHYLS-GGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIH  234 (346)
Q Consensus       156 ~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  234 (346)
                      ........    ...+. ...+. .+..+++++.++.|+.||.++++....+....  ...++|++. .+++++.++.|+
T Consensus        72 ~w~~~~~~----~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~--~~~~~p~~~-~v~~~~~dg~v~  143 (369)
T 2hz6_A           72 LTKLPFTI----PELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF--ADSLSPSTS-LLYLGRTEYTIT  143 (369)
T ss_dssp             SEECSCCH----HHHHTTCSCC------CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEE
T ss_pred             eeeeeccC----ccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC--cccccccCC-EEEEEecCCEEE
Confidence            43332110    00110 01111 34567777889999999999999877665332  234556666 788888899999


Q ss_pred             EEEcccCCcceeeecCCCcceEEEEeCCCC--CcEEEEecCCCeEEEEecCC
Q 019059          235 LWDLRMLKAPIQELPGHTHWTWAVCCNPEY--DGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       235 i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~--~~~l~s~~~d~~i~iwd~~~  284 (346)
                      .||.++ ++.+..+..+  ......++++.  ...+++++.||.|+.||.++
T Consensus       144 a~d~~t-G~~~W~~~~~--~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~t  192 (369)
T 2hz6_A          144 MYDTKT-RELRWNATYF--DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSES  192 (369)
T ss_dssp             CCCSSS-SSCCCEEEEE--EECCBCCCCCTTCCCCEEEEETSCEEEEECTTT
T ss_pred             EEECCC-CCEEEeEecc--cccCccccCCccccceEEEECCCCEEEEEECCC
Confidence            999987 4344443321  12233344421  13466788899999999988

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.95  E-value=1.8e-06  Score=80.52  Aligned_cols=198  Identities=11%  Similarity=0.140  Sum_probs=114.8

Q ss_pred             ceEEeeec-CCCCceEEEEeecCC-cceEEEEecCcccCCCCCccc-eeee-eeeccCCceEEEEeecCCCCcEEEEecC
Q 019059           67 EIWDLSSC-PFDQRIFSTVFSTGE-SYGAAIWQIPELYGQLNSPQL-ERIA-ALDAHVGKINCVLWWSSGRHDKLVSIDE  142 (346)
Q Consensus        67 ~v~~~~~~-~~~~~l~~~~~~~~~-d~~i~vw~~~~~~~~~~~~~~-~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~d  142 (346)
                      .+...+|| |||+.|+.+...+|. ...|.++|+.         .+ +.+. .+.   .....+.|+||++.++++...+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~---------~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~  242 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRIS---------DPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDE  242 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETT---------CTTCCCCCCEE---EECSCCEECSSTTEEEEEEECT
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECC---------CCCEeCCcccc---CceeeEEEecCCCEEEEEEECC
Confidence            67889999 999998877644333 3479999987         22 2111 121   1234688999998755555321


Q ss_pred             ----CeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec---CCeEEEEEccCCC-cc--ceeeccc--
Q 019059          143 ----ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC---ESSVQFWDLRSMG-KT--NSIEHAH--  210 (346)
Q Consensus       143 ----~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~-~~--~~~~~~~--  210 (346)
                          ..|+++++.++...........  .......+.|+||+++|+....   ...|+++|+.++. ..  ..+....  
T Consensus       243 ~~~~~~v~~~~lgt~~~~~~lv~~~~--~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~  320 (751)
T 2xe4_A          243 TLRENKVWRHVMGKLQSEDVCLYEEH--NPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKG  320 (751)
T ss_dssp             TCCEEEEEEEETTSCGGGCEEEEECC--CTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTT
T ss_pred             CCCCCEEEEEECCCCchhcEEEEecC--CCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCC
Confidence                3688888876543222222111  1123567899999999887763   4578889998763 22  3332222  


Q ss_pred             -eeEEEeCCCCCcEEEEecCC----CeEEEEEcccCCcceee-ecCCCc--ceEEEEeCCCCCcEEEEecCCCeEE--EE
Q 019059          211 -VRNVDYDTKKKHLLVTAADE----SGIHLWDLRMLKAPIQE-LPGHTH--WTWAVCCNPEYDGFILSAGTDSTVN--LW  280 (346)
Q Consensus       211 -v~~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~-~~~~~~--~v~~v~~~~~~~~~l~s~~~d~~i~--iw  280 (346)
                       ..++.|+. +..+++....+    ..|..+|+... ..... +..+..  .+..+.+.  +..++++...++..+  ++
T Consensus       321 ~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~-~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~  396 (751)
T 2xe4_A          321 VRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQP-SDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWTM  396 (751)
T ss_dssp             CCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTST-TCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEEE
T ss_pred             ceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCc-ccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEE
Confidence             55566554 44355555544    35666676532 12233 333433  34555554  436777777788554  45


Q ss_pred             ec
Q 019059          281 LV  282 (346)
Q Consensus       281 d~  282 (346)
                      |+
T Consensus       397 dl  398 (751)
T 2xe4_A          397 MA  398 (751)
T ss_dssp             EC
T ss_pred             ec
Confidence            54

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.95  E-value=1.2e-07  Score=79.06  Aligned_cols=215  Identities=5%  Similarity=-0.080  Sum_probs=134.6

Q ss_pred             CCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCC
Q 019059           77 DQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKN  156 (346)
Q Consensus        77 ~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~  156 (346)
                      +..+.++    ..++.|..+|..          ++...........+.++...+++.  +.+++.++.|..+|.. ++..
T Consensus       107 ~~~l~v~----t~~~~l~~~d~~----------g~~~~~~~~~~~~~~~~~~~~~g~--l~vgt~~~~l~~~d~~-g~~~  169 (330)
T 3hxj_A          107 EDILYVT----SMDGHLYAINTD----------GTEKWRFKTKKAIYATPIVSEDGT--IYVGSNDNYLYAINPD-GTEK  169 (330)
T ss_dssp             TTEEEEE----CTTSEEEEECTT----------SCEEEEEECSSCCCSCCEECTTSC--EEEECTTSEEEEECTT-SCEE
T ss_pred             CCEEEEE----ecCCEEEEEcCC----------CCEEEEEcCCCceeeeeEEcCCCE--EEEEcCCCEEEEECCC-CCEe
Confidence            3445553    467788888854          233333333444566667777776  6667678999999987 5433


Q ss_pred             ceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc--eeEEEeCCCCCcEEEEecCCCeEE
Q 019059          157 AQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAADESGIH  234 (346)
Q Consensus       157 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~  234 (346)
                      ......     ...+.++...+++. +.+++  +.|..+| .+++.........  +.++...+++.  +..++.++.+.
T Consensus       170 ~~~~~~-----~~~~~~~~~d~~g~-l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~--l~v~t~~~gl~  238 (330)
T 3hxj_A          170 WRFKTN-----DAITSAASIGKDGT-IYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT--IYVTSLDGHLY  238 (330)
T ss_dssp             EEEECS-----SCCCSCCEECTTCC-EEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC--EEEEETTTEEE
T ss_pred             EEEecC-----CCceeeeEEcCCCE-EEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe--EEEEcCCCeEE
Confidence            333211     12456666766665 55555  7899999 6666555444332  88888888885  45566677888


Q ss_pred             EEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccccccc
Q 019059          235 LWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYE  314 (346)
Q Consensus       235 i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (346)
                      .+|..  ...+..+......+..+.+.+++  .|..++.++.|..+|. .                   ++.+..+....
T Consensus       239 ~~~~~--g~~~~~~~~~~~~~~~~~~~~~g--~l~v~t~~ggl~~~d~-~-------------------g~~~~~~~~~~  294 (330)
T 3hxj_A          239 AINPD--GTEKWRFKTGKRIESSPVIGNTD--TIYFGSYDGHLYAINP-D-------------------GTEKWNFETGS  294 (330)
T ss_dssp             EECTT--SCEEEEEECSSCCCSCCEECTTS--CEEEECTTCEEEEECT-T-------------------SCEEEEEECSS
T ss_pred             EECCC--CCEeEEeeCCCCccccceEcCCC--eEEEecCCCCEEEECC-C-------------------CcEEEEEEcCC
Confidence            88743  33444554444444556666555  4667777888999986 4                   34444443334


Q ss_pred             ceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          315 DSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       315 ~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      ..+.++...+++.  |..++.+|.+++...+
T Consensus       295 ~~~~~~~~d~~g~--l~~gt~~G~~~~~~~~  323 (330)
T 3hxj_A          295 WIIATPVIDENGT--IYFGTRNGKFYALFNL  323 (330)
T ss_dssp             CCCSCCEECTTCC--EEEECTTSCEEEEEC-
T ss_pred             ccccceEEcCCCE--EEEEcCCCeEEEEecc
Confidence            4577788878875  5568889999887653

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.94  E-value=4.2e-06  Score=70.44  Aligned_cols=233  Identities=9%  Similarity=-0.019  Sum_probs=138.2

Q ss_pred             ceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEE
Q 019059           67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIF  146 (346)
Q Consensus        67 ~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~  146 (346)
                      .-.|.+..+ ...|+.+     ....|+..+++         .... ..+......+..++|.+.+..++.+-...+.|.
T Consensus        35 ~~~C~~~~~-~~~ll~~-----~~~~I~~i~~~---------g~~~-~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~   98 (349)
T 3v64_C           35 RRSCKALGP-EPVLLFA-----NRIDIRQVLPH---------RSEY-TLLLNNLENAIALDFHHRRELVFWSDVTLDRIL   98 (349)
T ss_dssp             SSCEEESSS-CCEEEEE-----CBSCEEEECTT---------SCCE-EEEECSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCccccccc-CceeEee-----cccceEEEeCC---------CCee-EEeecCCCceEEEEEeccccEEEEEeccCCceE
Confidence            344555555 4455553     44467777765         2122 222223345789999987776555556678999


Q ss_pred             EEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEe-cCCeEEEEEccCCCccceeecc-c-eeEEEeCCCCCcE
Q 019059          147 LWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT-CESSVQFWDLRSMGKTNSIEHA-H-VRNVDYDTKKKHL  223 (346)
Q Consensus       147 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~-~-v~~~~~~~~~~~~  223 (346)
                      .++++... ...+....    .....++++.+.+..|+.+. ..+.|.+.++........+... . ...++++|.+..+
T Consensus        99 r~~~~g~~-~~~~~~~~----~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~l  173 (349)
T 3v64_C           99 RANLNGSN-VEEVVSTG----LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTI  173 (349)
T ss_dssp             EEETTSCS-CEEEECSS----CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEE
T ss_pred             EEecCCCC-ceEEEeCC----CCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeE
Confidence            99987543 22222211    12457788887666666554 4678999998755433323222 2 8999999977656


Q ss_pred             EEEecCC-CeEEEEEcccCCcceeee-cCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccc
Q 019059          224 LVTAADE-SGIHLWDLRMLKAPIQEL-PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQ  301 (346)
Q Consensus       224 l~~~~~d-g~i~i~d~~~~~~~~~~~-~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  301 (346)
                      +++-... +.|..+++.. . ....+ ...-...+.|+++|++..+.++-...+.|..+|+..                 
T Consensus       174 y~td~~~~~~I~r~~~dG-~-~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG-----------------  234 (349)
T 3v64_C          174 YWTDWGNTPRIEASSMDG-S-GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG-----------------  234 (349)
T ss_dssp             EEEECSSSCEEEEEETTS-C-SCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-----------------
T ss_pred             EEeccCCCCEEEEEeCCC-C-CcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC-----------------
Confidence            6666555 7888888764 2 22333 223345789999987735555556677899999874                 


Q ss_pred             cccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEee
Q 019059          302 RANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHM  343 (346)
Q Consensus       302 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~  343 (346)
                        ......+.........+++. .+ .++++-...+.|..++
T Consensus       235 --~~~~~~~~~~~~~P~giav~-~~-~ly~td~~~~~V~~~~  272 (349)
T 3v64_C          235 --SHRKAVISQGLPHPFAITVF-ED-SLYWTDWHTKSINSAN  272 (349)
T ss_dssp             --CSCEEEECSSCSSEEEEEEE-TT-EEEEEETTTTEEEEEE
T ss_pred             --CceEEEEeCCCCCceEEEEE-CC-EEEEecCCCCeEEEEE
Confidence              11111111112234566663 23 3666666666666655

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.93  E-value=2.6e-07  Score=72.30  Aligned_cols=191  Identities=9%  Similarity=0.061  Sum_probs=120.6

Q ss_pred             ceeeeeeeccCC--ceEEEEeecCCCCcEEEEecC--CeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEE
Q 019059          110 LERIAALDAHVG--KINCVLWWSSGRHDKLVSIDE--ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVA  185 (346)
Q Consensus       110 ~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  185 (346)
                      .+.+.++ .|+.  -...+.|++ + .++.+++.+  +.|+.+|+.+++..........    ..-.+++.  .+..++.
T Consensus         9 ~~v~~~~-phd~~~ftqGL~~~~-~-~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~----~fgeGi~~--~~~~ly~   79 (243)
T 3mbr_X            9 YRVVKRY-PHDTTAFTEGLFYLR-G-HLYESTGETGRSSVRKVDLETGRILQRAEVPPP----YFGAGIVA--WRDRLIQ   79 (243)
T ss_dssp             EEEEEEE-ECCTTCCEEEEEEET-T-EEEEEECCTTSCEEEEEETTTCCEEEEEECCTT----CCEEEEEE--ETTEEEE
T ss_pred             eEEEEEc-CCCCccccccEEEEC-C-EEEEECCCCCCceEEEEECCCCCEEEEEeCCCC----cceeEEEE--eCCEEEE
Confidence            4555666 5644  456889986 3 345555654  5999999998875554433221    01123343  3455555


Q ss_pred             Ee-cCCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecC--CC---cceEEE
Q 019059          186 AT-CESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG--HT---HWTWAV  258 (346)
Q Consensus       186 ~~-~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~---~~v~~v  258 (346)
                      .. .++.+.+||..+.+.+.++..+. -..++  +++..+++ +..++.|.++|..+.+ .+..+.-  +.   ..++.+
T Consensus        80 ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwglt--~dg~~L~v-Sdgs~~l~~iDp~t~~-~~~~I~V~~~g~~~~~lNeL  155 (243)
T 3mbr_X           80 LTWRNHEGFVYDLATLTPRARFRYPGEGWALT--SDDSHLYM-SDGTAVIRKLDPDTLQ-QVGSIKVTAGGRPLDNLNEL  155 (243)
T ss_dssp             EESSSSEEEEEETTTTEEEEEEECSSCCCEEE--ECSSCEEE-ECSSSEEEEECTTTCC-EEEEEECEETTEECCCEEEE
T ss_pred             EEeeCCEEEEEECCcCcEEEEEeCCCCceEEe--eCCCEEEE-ECCCCeEEEEeCCCCe-EEEEEEEccCCcccccceee
Confidence            54 58999999999999888887444 34444  45553444 4557899999998743 4555442  22   234566


Q ss_pred             EeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccc-------------cccceeeEEEeCCC
Q 019059          259 CCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYS-------------DYEDSVYGLAWSSR  325 (346)
Q Consensus       259 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~v~~~~~~~~  325 (346)
                      .+. +| .+.+..-.+..|.+-|.++                   ++.+..+.             ......+.|+|+|+
T Consensus       156 e~~-~G-~lyanvw~s~~I~vIDp~t-------------------G~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~  214 (243)
T 3mbr_X          156 EWV-NG-ELLANVWLTSRIARIDPAS-------------------GKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAE  214 (243)
T ss_dssp             EEE-TT-EEEEEETTTTEEEEECTTT-------------------CBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETT
T ss_pred             EEe-CC-EEEEEECCCCeEEEEECCC-------------------CCEEEEEECCcCccccccccCCcCCceEEEEEcCC
Confidence            665 56 6565555677899999988                   44433322             11234689999999


Q ss_pred             CCcEEEEee
Q 019059          326 EPWIFASLS  334 (346)
Q Consensus       326 ~~~~l~s~~  334 (346)
                      +++++++|-
T Consensus       215 ~~~lfVTGK  223 (243)
T 3mbr_X          215 HDRLFVTGK  223 (243)
T ss_dssp             TTEEEEEET
T ss_pred             CCEEEEECC
Confidence            887777774

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.91  E-value=3.4e-06  Score=69.71  Aligned_cols=224  Identities=10%  Similarity=-0.023  Sum_probs=130.4

Q ss_pred             cceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecC--C
Q 019059           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDE--E  143 (346)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d--~  143 (346)
                      .....++|.|++. |+.+   ....+.|..|+.+          ......+ ........+++.++++ ++++....  .
T Consensus        32 ~~pegia~~~~g~-lyv~---d~~~~~I~~~d~~----------g~~~~~~-~~~~~p~gia~~~dG~-l~vad~~~~~~   95 (306)
T 2p4o_A           32 TFLENLASAPDGT-IFVT---NHEVGEIVSITPD----------GNQQIHA-TVEGKVSGLAFTSNGD-LVATGWNADSI   95 (306)
T ss_dssp             CCEEEEEECTTSC-EEEE---ETTTTEEEEECTT----------CCEEEEE-ECSSEEEEEEECTTSC-EEEEEECTTSC
T ss_pred             CCcceEEECCCCC-EEEE---eCCCCeEEEECCC----------CceEEEE-eCCCCceeEEEcCCCc-EEEEeccCCcc
Confidence            4567899999877 4443   2456788888865          1222222 2235688999999998 45544332  2


Q ss_pred             eEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEe-cCCeEEEEEccCCCc-cce--------eeccc---
Q 019059          144 NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT-CESSVQFWDLRSMGK-TNS--------IEHAH---  210 (346)
Q Consensus       144 ~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~-~~~--------~~~~~---  210 (346)
                      .|..++..+++. ..+.....   ......++..+++ .++++. .++.|+++|...++. +..        .....   
T Consensus        96 ~v~~~d~~~g~~-~~~~~~~~---~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~  170 (306)
T 2p4o_A           96 PVVSLVKSDGTV-ETLLTLPD---AIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPA  170 (306)
T ss_dssp             EEEEEECTTSCE-EEEEECTT---CSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCS
T ss_pred             eEEEEcCCCCeE-EEEEeCCC---ccccCcccccCCC-cEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCc
Confidence            466677665442 22221111   1123444544444 444444 578999999875421 100        00011   


Q ss_pred             eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCc--ceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCC
Q 019059          211 VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA--PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHD  288 (346)
Q Consensus       211 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  288 (346)
                      .+.+  +|++.+++++-...+.|..+|+.....  ....+.. ......++++++| +++++....+.|.++|...    
T Consensus       171 pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG-~l~va~~~~~~V~~~~~~G----  242 (306)
T 2p4o_A          171 ANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEG-NLYGATHIYNSVVRIAPDR----  242 (306)
T ss_dssp             EEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTC-CEEEECBTTCCEEEECTTC----
T ss_pred             CCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCC-CEEEEeCCCCeEEEECCCC----
Confidence            5666  778875777777788999999874121  1122211 1345678899999 7777776678899998653    


Q ss_pred             CCCcccccCCcccccccc--ccccccccceeeEEEeC---CCCCcEEEEee
Q 019059          289 ELPSESLVESPNQRANSL--LNSYSDYEDSVYGLAWS---SREPWIFASLS  334 (346)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~---~~~~~~l~s~~  334 (346)
                                      +.  +..+...-..+++++|.   |+++.++++..
T Consensus       243 ----------------~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          243 ----------------STTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             ----------------CEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             ----------------CEEEEeecccccCCceEEEEecccCCCCEEEEECC
Confidence                            32  22222222447899998   88775666554

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.90  E-value=1.8e-07  Score=86.15  Aligned_cols=185  Identities=10%  Similarity=0.016  Sum_probs=114.7

Q ss_pred             EEEeecCCCCcEEEEecCC-------------------eEEEEEcCCCCCCceeeecccCC----CceeeEEEEeCCCCC
Q 019059          125 CVLWWSSGRHDKLVSIDEE-------------------NIFLWSLDCSNKNAQVQSKQSSG----MLHYLSGGAWDPHDV  181 (346)
Q Consensus       125 ~~~~~~~~~~~~~~~~~d~-------------------~i~vwd~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~  181 (346)
                      .++++|++. +++++..++                   .|..+|.++++............    ....+.......+++
T Consensus       239 ~~~~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~  317 (689)
T 1yiq_A          239 SFAYDPELN-LLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGK  317 (689)
T ss_dssp             CEEEETTTT-EEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred             ceeEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCc
Confidence            577888776 355554444                   49999999988766655432110    011111111122444


Q ss_pred             ---cEEEEecCCeEEEEEccCCCccceeeccc-----------------------------------------eeEEEeC
Q 019059          182 ---NAVAATCESSVQFWDLRSMGKTNSIEHAH-----------------------------------------VRNVDYD  217 (346)
Q Consensus       182 ---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-----------------------------------------v~~~~~~  217 (346)
                         .++.++.+|.++++|.++++.+.......                                         -..++++
T Consensus       318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~d  397 (689)
T 1yiq_A          318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYN  397 (689)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEE
T ss_pred             EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceEC
Confidence               57778889999999999998763221100                                         1236888


Q ss_pred             CCCCcEEEEecC---------------------------------------------CCeEEEEEcccCCcceeeecCCC
Q 019059          218 TKKKHLLVTAAD---------------------------------------------ESGIHLWDLRMLKAPIQELPGHT  252 (346)
Q Consensus       218 ~~~~~~l~~~~~---------------------------------------------dg~i~i~d~~~~~~~~~~~~~~~  252 (346)
                      |+.. ++++...                                             +|.|+.||+.+ ++.+-.+..+.
T Consensus       398 p~~~-~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~t-G~~~W~~~~~~  475 (689)
T 1yiq_A          398 PDTG-LVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVK-QQAAWEVPYVT  475 (689)
T ss_dssp             TTTT-EEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTT-TEEEEEEEESS
T ss_pred             CCCC-EEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCC-CCeEeEccCCC
Confidence            8877 5555421                                             37799999987 44555554333


Q ss_pred             cceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccce-eeEEEeCCCCCcEEE
Q 019059          253 HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDS-VYGLAWSSREPWIFA  331 (346)
Q Consensus       253 ~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~  331 (346)
                       ++..-.+...+ .+++.++.|+.|+.||.++                   ++.+..+...... ..-+.|..+|+.+++
T Consensus       476 -~~~~g~~~tag-glvf~gt~dg~l~a~D~~t-------------------G~~lw~~~~~~~~~~~p~ty~~~G~qyv~  534 (689)
T 1yiq_A          476 -IFNGGTLSTAG-NLVFEGSADGRVIAYAADT-------------------GEKLWEQPAASGVMAAPVTYSVDGEQYVT  534 (689)
T ss_dssp             -SCCCCEEEETT-TEEEEECTTSEEEEEETTT-------------------CCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             -CccCccceECC-CEEEEECCCCcEEEEECCC-------------------CccceeeeCCCCcccCceEEEECCEEEEE
Confidence             23333455566 7888999999999999999                   8888766543321 234667778874555


Q ss_pred             Ee
Q 019059          332 SL  333 (346)
Q Consensus       332 s~  333 (346)
                      ..
T Consensus       535 ~~  536 (689)
T 1yiq_A          535 FM  536 (689)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.89  E-value=7.9e-08  Score=88.29  Aligned_cols=231  Identities=10%  Similarity=0.018  Sum_probs=139.8

Q ss_pred             CCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeecc-C----CceEEEEeecCCCCcEEEEec------CCeE
Q 019059           77 DQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH-V----GKINCVLWWSSGRHDKLVSID------EENI  145 (346)
Q Consensus        77 ~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~-~----~~i~~~~~~~~~~~~~~~~~~------d~~i  145 (346)
                      +..++++    ..|+.|..+|..         +++.+-.+..+ .    ..+.+.-...++.  +++++.      ++.|
T Consensus       128 ~~~v~v~----~~dg~l~alD~~---------tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~--v~v~~~~~~~~~~g~v  192 (677)
T 1kb0_A          128 KGKVYVG----AWDGRLIALDAA---------TGKEVWHQNTFEGQKGSLTITGAPRVFKGK--VIIGNGGAEYGVRGYI  192 (677)
T ss_dssp             TTEEEEE----CTTSEEEEEETT---------TCCEEEEEETTTTCCSSCBCCSCCEEETTE--EEECCBCTTTCCBCEE
T ss_pred             CCEEEEE----cCCCEEEEEECC---------CCCEEeeecCCcCcCcCcccccCcEEECCE--EEEEecccccCCCCEE
Confidence            4556654    578899999987         56665555433 1    1121111112333  555432      6899


Q ss_pred             EEEEcCCCCCCceeeecccC---------------------------CCceeeEEEEeCCCCCcEEEEecCC--------
Q 019059          146 FLWSLDCSNKNAQVQSKQSS---------------------------GMLHYLSGGAWDPHDVNAVAATCES--------  190 (346)
Q Consensus       146 ~vwd~~~~~~~~~~~~~~~~---------------------------~~~~~v~~~~~~~~~~~l~~~~~d~--------  190 (346)
                      +.+|..+++...+.......                           +.......++++|++..++++..++        
T Consensus       193 ~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~  272 (677)
T 1kb0_A          193 TAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVR  272 (677)
T ss_dssp             EEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHH
T ss_pred             EEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCC
Confidence            99999988866655432211                           0000113567888888888877553        


Q ss_pred             -----------eEEEEEccCCCccceeeccc-----------eeEEEeCCCCC--cEEEEecCCCeEEEEEcccCCccee
Q 019059          191 -----------SVQFWDLRSMGKTNSIEHAH-----------VRNVDYDTKKK--HLLVTAADESGIHLWDLRMLKAPIQ  246 (346)
Q Consensus       191 -----------~i~i~d~~~~~~~~~~~~~~-----------v~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~  246 (346)
                                 .|..+|.++++.+-.++..+           ..-+....+|+  ..++.++.+|.++++|.++ ++++.
T Consensus       273 ~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~t-G~~l~  351 (677)
T 1kb0_A          273 SPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTN-GKFIS  351 (677)
T ss_dssp             STTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTT-CCEEE
T ss_pred             CccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCC-CCEec
Confidence                       59999999999776655221           11222223552  2788899999999999987 44444


Q ss_pred             eecCCC-----------cce------------------------EEEEeCCCCCcEEEEecCC-----------------
Q 019059          247 ELPGHT-----------HWT------------------------WAVCCNPEYDGFILSAGTD-----------------  274 (346)
Q Consensus       247 ~~~~~~-----------~~v------------------------~~v~~~~~~~~~l~s~~~d-----------------  274 (346)
                      .+....           .++                        ..++++|+. .++++...+                 
T Consensus       352 ~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~-~~~yv~~~~~~~~~~~~~~~~~g~~~  430 (677)
T 1kb0_A          352 AKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT-GLVYLPAQNVPVNLMDDKKWEFNQAG  430 (677)
T ss_dssp             EEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT-TEEEEEEEECCCEEEECTTCCTTCCC
T ss_pred             cccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC-CEEEEeChhcceeeeccccccccccc
Confidence            332110           001                        146788887 677665432                 


Q ss_pred             --------------------------CeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCc
Q 019059          275 --------------------------STVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPW  328 (346)
Q Consensus       275 --------------------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  328 (346)
                                                +.|..||+.+                   ++.+-.+. +..++.+..+...+. 
T Consensus       431 ~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~t-------------------G~~~W~~~-~~~~~~~g~~~~~g~-  489 (677)
T 1kb0_A          431 PGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVA-------------------QKAAWSVE-HVSPWNGGTLTTAGN-  489 (677)
T ss_dssp             TTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTT-------------------TEEEEEEE-ESSSCCCCEEEETTT-
T ss_pred             ccccccccccccccccccccCCCCCccEEEEEeCCC-------------------CcEEeecC-CCCCCcCcceEeCCC-
Confidence                                      5677777776                   55554443 222344455556666 


Q ss_pred             EEEEeecCCeEEEeeec
Q 019059          329 IFASLSYDGRVRNHMLE  345 (346)
Q Consensus       329 ~l~s~~~d~~v~vw~~~  345 (346)
                      +++.++.|+.+++||++
T Consensus       490 ~v~~g~~dg~l~a~D~~  506 (677)
T 1kb0_A          490 VVFQGTADGRLVAYHAA  506 (677)
T ss_dssp             EEEEECTTSEEEEEETT
T ss_pred             EEEEECCCCcEEEEECC
Confidence            67778999999999975

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.88  E-value=3.1e-06  Score=72.32  Aligned_cols=230  Identities=9%  Similarity=-0.012  Sum_probs=136.6

Q ss_pred             EeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEE
Q 019059           70 DLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWS  149 (346)
Q Consensus        70 ~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd  149 (346)
                      |.+..+ ...|+.+     ....|+..++.         .... ..+.........++|.+.+..++++-...+.|..++
T Consensus        81 C~~~~~-~~~l~~~-----~~~~I~~i~~~---------~~~~-~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~  144 (386)
T 3v65_B           81 CKALGP-EPVLLFA-----NRIDIRQVLPH---------RSEY-TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRAN  144 (386)
T ss_dssp             EEECSS-CCEEEEE-----CBSCEEEECTT---------SCCC-EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ECCccc-cceeEee-----cCccceeeccC---------CCcE-EEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEe
Confidence            444444 4455553     44567777775         2222 222223445789999987776555556678999999


Q ss_pred             cCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEe-cCCeEEEEEccCCCccceeecc-c-eeEEEeCCCCCcEEEE
Q 019059          150 LDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT-CESSVQFWDLRSMGKTNSIEHA-H-VRNVDYDTKKKHLLVT  226 (346)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~-~-v~~~~~~~~~~~~l~~  226 (346)
                      ++... ...+....    .....++++.+.+..|+.+. ..+.|.+.++........+... . ...++++|.+..++++
T Consensus       145 ~~g~~-~~~~~~~~----~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~t  219 (386)
T 3v65_B          145 LNGSN-VEEVVSTG----LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWT  219 (386)
T ss_dssp             TTSCC-EEEEECSS----CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred             cCCCC-cEEEEeCC----CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEe
Confidence            87543 22222111    12456788887666666654 4678988888754433323222 2 8999999977756666


Q ss_pred             ecCC-CeEEEEEcccCCcceeee-cCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccc
Q 019059          227 AADE-SGIHLWDLRMLKAPIQEL-PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRAN  304 (346)
Q Consensus       227 ~~~d-g~i~i~d~~~~~~~~~~~-~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  304 (346)
                      -... +.|..+++.. . ....+ ...-...+.|+++|++..+.++-+..+.|..+|+..                   .
T Consensus       220 d~~~~~~I~r~~~dG-~-~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG-------------------~  278 (386)
T 3v65_B          220 DWGNTPRIEASSMDG-S-GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG-------------------S  278 (386)
T ss_dssp             ECSSSCEEEEEETTS-C-SCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS-------------------C
T ss_pred             ccCCCCEEEEEeCCC-C-CcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC-------------------C
Confidence            5555 7888888764 2 22232 223445789999987735555656677899998864                   1


Q ss_pred             ccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEee
Q 019059          305 SLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHM  343 (346)
Q Consensus       305 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~  343 (346)
                      .....+.........|++. .+ .++++-...+.|..++
T Consensus       279 ~~~~~~~~~~~~P~giav~-~~-~ly~td~~~~~V~~~~  315 (386)
T 3v65_B          279 HRKAVISQGLPHPFAITVF-ED-SLYWTDWHTKSINSAN  315 (386)
T ss_dssp             SCEEEECSSCSSEEEEEEE-TT-EEEEEETTTTEEEEEE
T ss_pred             eeEEEEECCCCCceEEEEE-CC-EEEEeeCCCCeEEEEE
Confidence            1111111112235667773 33 3666666677777665

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.88  E-value=6.4e-07  Score=70.11  Aligned_cols=185  Identities=10%  Similarity=0.027  Sum_probs=122.0

Q ss_pred             ccc--cceEEeeecCCCCceEEEEeecCCc--ceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEE
Q 019059           63 SHP--NEIWDLSSCPFDQRIFSTVFSTGES--YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV  138 (346)
Q Consensus        63 ~h~--~~v~~~~~~~~~~~l~~~~~~~~~d--~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  138 (346)
                      .|.  .-...+.|++ + .|..+.   |..  ..|+++|+.         +++.+..+.... ..........+..++.+
T Consensus        16 phd~~~ftqGL~~~~-~-~Lyest---G~~g~S~v~~vD~~---------tgkv~~~~~l~~-~~fgeGi~~~~~~ly~l   80 (243)
T 3mbr_X           16 PHDTTAFTEGLFYLR-G-HLYEST---GETGRSSVRKVDLE---------TGRILQRAEVPP-PYFGAGIVAWRDRLIQL   80 (243)
T ss_dssp             ECCTTCCEEEEEEET-T-EEEEEE---CCTTSCEEEEEETT---------TCCEEEEEECCT-TCCEEEEEEETTEEEEE
T ss_pred             CCCCccccccEEEEC-C-EEEEEC---CCCCCceEEEEECC---------CCCEEEEEeCCC-CcceeEEEEeCCEEEEE
Confidence            555  3466899986 3 454442   443  489999998         677777664332 33444444456666666


Q ss_pred             EecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeecc-------ce
Q 019059          139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA-------HV  211 (346)
Q Consensus       139 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-------~v  211 (346)
                      .-.++.+.++|..+.+...++....      .-..++  +++..|+++..++.|.++|..+.+....+...       .+
T Consensus        81 tw~~~~v~v~D~~tl~~~~ti~~~~------~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~l  152 (243)
T 3mbr_X           81 TWRNHEGFVYDLATLTPRARFRYPG------EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNL  152 (243)
T ss_dssp             ESSSSEEEEEETTTTEEEEEEECSS------CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred             EeeCCEEEEEECCcCcEEEEEeCCC------CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccc
Confidence            6678999999998766544443321      223444  46788888877899999999999887776632       16


Q ss_pred             eEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecC-------------CCcceEEEEeCCCCCcEEEEecC
Q 019059          212 RNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG-------------HTHWTWAVCCNPEYDGFILSAGT  273 (346)
Q Consensus       212 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------~~~~v~~v~~~~~~~~~l~s~~~  273 (346)
                      +.+.|. +|. +++..-.+..|.+.|.++ .+.+..+..             -..-.+.|+++|++.+++++|-.
T Consensus       153 NeLe~~-~G~-lyanvw~s~~I~vIDp~t-G~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~  224 (243)
T 3mbr_X          153 NELEWV-NGE-LLANVWLTSRIARIDPAS-GKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR  224 (243)
T ss_dssp             EEEEEE-TTE-EEEEETTTTEEEEECTTT-CBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred             eeeEEe-CCE-EEEEECCCCeEEEEECCC-CCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence            777776 565 666665677999999987 444444331             12356899999988566666643

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.86  E-value=2.8e-06  Score=67.44  Aligned_cols=201  Identities=7%  Similarity=0.052  Sum_probs=124.5

Q ss_pred             eeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEE
Q 019059          116 LDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFW  195 (346)
Q Consensus       116 ~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~  195 (346)
                      +.+-...+..++|+|++..++++...++.|...|.. ++....+....    .....++++.+++.++++.-.++.+.++
T Consensus        22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g----~~D~EGIa~~~~g~~~vs~E~~~~l~~~   96 (255)
T 3qqz_A           22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDF----VKDLETIEYIGDNQFVISDERDYAIYVI   96 (255)
T ss_dssp             CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSS----CSSEEEEEECSTTEEEEEETTTTEEEEE
T ss_pred             CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCC----CCChHHeEEeCCCEEEEEECCCCcEEEE
Confidence            444556799999999877656666668888888886 44322222111    1367888998887755554467889999


Q ss_pred             EccCCCcc---ceeec-----c-c--eeEEEeCCCCCcEEEEecCCCeEEEEEccc--CCcceeeec-------CCCcce
Q 019059          196 DLRSMGKT---NSIEH-----A-H--VRNVDYDTKKKHLLVTAADESGIHLWDLRM--LKAPIQELP-------GHTHWT  255 (346)
Q Consensus       196 d~~~~~~~---~~~~~-----~-~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~-------~~~~~v  255 (346)
                      ++.....+   .....     . .  ...++|+|.+. .|+++.+.....+|.++.  ....+..+.       .+...+
T Consensus        97 ~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~-~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~  175 (255)
T 3qqz_A           97 SLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDH-TFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDV  175 (255)
T ss_dssp             EECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTT-EEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCC
T ss_pred             EcCCCCeeeeeeeeccccccccccCCcceEEEeCCCC-EEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCc
Confidence            88755421   11110     1 1  68999999987 444454444445554431  111122221       123467


Q ss_pred             EEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccc--cc-cc------cceeeEEEeCCCC
Q 019059          256 WAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNS--YS-DY------EDSVYGLAWSSRE  326 (346)
Q Consensus       256 ~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~------~~~v~~~~~~~~~  326 (346)
                      .+++++|...++++.......|.++|...                    +.+..  +. +.      -...-.|+|.++|
T Consensus       176 S~l~~dp~tg~lliLS~~s~~L~~~d~~g--------------------~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G  235 (255)
T 3qqz_A          176 SGAEFNQQKNTLLVLSHESRALQEVTLVG--------------------EVIGEMSLTKGSRGLSHNIKQAEGVAMDASG  235 (255)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEECTTC--------------------CEEEEEECSTTGGGCSSCCCSEEEEEECTTC
T ss_pred             eeEEEcCCCCeEEEEECCCCeEEEEcCCC--------------------CEEEEEEcCCccCCcccccCCCCeeEECCCC
Confidence            89999998756777777788899999875                    33222  22 11      1246889999999


Q ss_pred             CcEEEEeecCCeEEEeee
Q 019059          327 PWIFASLSYDGRVRNHML  344 (346)
Q Consensus       327 ~~~l~s~~~d~~v~vw~~  344 (346)
                      . ++++ ++.+.++.+.-
T Consensus       236 ~-lyIv-sE~n~~y~f~~  251 (255)
T 3qqz_A          236 N-IYIV-SEPNRFYRFTP  251 (255)
T ss_dssp             C-EEEE-ETTTEEEEEEC
T ss_pred             C-EEEE-cCCceEEEEEe
Confidence            6 5555 66676666643

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.86  E-value=7.1e-06  Score=69.04  Aligned_cols=201  Identities=8%  Similarity=-0.053  Sum_probs=126.9

Q ss_pred             cccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCC
Q 019059           64 HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEE  143 (346)
Q Consensus        64 h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~  143 (346)
                      ....+.+++|.+.+..|..+   ....+.|..++++         .......+.........+++.+.+..++++-...+
T Consensus        71 ~~~~~~~l~~d~~~~~ly~~---D~~~~~I~r~~~~---------g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~  138 (349)
T 3v64_C           71 NLENAIALDFHHRRELVFWS---DVTLDRILRANLN---------GSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTS  138 (349)
T ss_dssp             SCSCEEEEEEETTTTEEEEE---ETTTTEEEEEETT---------SCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTT
T ss_pred             CCCceEEEEEeccccEEEEE---eccCCceEEEecC---------CCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCC
Confidence            34557899999887777765   3456788888876         21211222222334578888876665555556678


Q ss_pred             eEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec-C-CeEEEEEccCCCccceeecc-c-eeEEEeCCC
Q 019059          144 NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-E-SSVQFWDLRSMGKTNSIEHA-H-VRNVDYDTK  219 (346)
Q Consensus       144 ~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-~~i~i~d~~~~~~~~~~~~~-~-v~~~~~~~~  219 (346)
                      .|.+.+++... ...+...    ......+++++|.+..|+.+.. . +.|..+++........+... . .+.|+++|+
T Consensus       139 ~I~~~~~dG~~-~~~l~~~----~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~  213 (349)
T 3v64_C          139 RIEVANLDGAH-RKVLLWQ----SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYA  213 (349)
T ss_dssp             EEEEEETTSCS-CEEEECT----TCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETT
T ss_pred             eEEEEcCCCCc-eEEEEeC----CCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCC
Confidence            99999987433 2222211    1225688999997777776653 4 78988888754332222211 2 899999987


Q ss_pred             CCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          220 KKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       220 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      +..++++-...+.|..+|+.. ......+.........+++. .+ .++++-...+.|..++..+
T Consensus       214 ~~~lY~aD~~~~~I~~~~~dG-~~~~~~~~~~~~~P~giav~-~~-~ly~td~~~~~V~~~~~~~  275 (349)
T 3v64_C          214 GRRMYWVDAKHHVIERANLDG-SHRKAVISQGLPHPFAITVF-ED-SLYWTDWHTKSINSANKFT  275 (349)
T ss_dssp             TTEEEEEETTTTEEEEEETTS-CSCEEEECSSCSSEEEEEEE-TT-EEEEEETTTTEEEEEETTT
T ss_pred             CCEEEEEECCCCEEEEEeCCC-CceEEEEeCCCCCceEEEEE-CC-EEEEecCCCCeEEEEEccC
Confidence            775777767778999999874 22222232233455677773 44 5666666678888887544

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.85  E-value=2.8e-06  Score=72.60  Aligned_cols=200  Identities=9%  Similarity=-0.056  Sum_probs=126.7

Q ss_pred             ccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCe
Q 019059           65 PNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEEN  144 (346)
Q Consensus        65 ~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~  144 (346)
                      ...+..++|.+.+..|+.+   ....+.|..++++         .......+.........+++.+.+..++++-...+.
T Consensus       115 ~~~~~gl~~d~~~~~ly~~---D~~~~~I~r~~~~---------g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~  182 (386)
T 3v65_B          115 LENAIALDFHHRRELVFWS---DVTLDRILRANLN---------GSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSR  182 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEE---ETTTTEEEEEETT---------SCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTE
T ss_pred             CCccEEEEEecCCCeEEEE---eCCCCcEEEEecC---------CCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCe
Confidence            3567899999877777765   3456788888876         222222222223345678888776655555566788


Q ss_pred             EEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec-C-CeEEEEEccCCCccceeecc-c-eeEEEeCCCC
Q 019059          145 IFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-E-SSVQFWDLRSMGKTNSIEHA-H-VRNVDYDTKK  220 (346)
Q Consensus       145 i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-~~i~i~d~~~~~~~~~~~~~-~-v~~~~~~~~~  220 (346)
                      |.+.+++... ...+...    ......++++.|.+..|+.+.. . +.|..+++............ . .+.|+++|++
T Consensus       183 I~~~~~dg~~-~~~l~~~----~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~  257 (386)
T 3v65_B          183 IEVANLDGAH-RKVLLWQ----SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAG  257 (386)
T ss_dssp             EEECBTTSCS-CEEEECS----SCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGG
T ss_pred             EEEEeCCCCc-eEEeecC----CCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCC
Confidence            9888886432 2222211    1235688999998777776653 3 68888888754333222211 2 8999999877


Q ss_pred             CcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          221 KHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       221 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      ..++++-...+.|..+|+.. ......+.........+++ ..+ .++++-...+.|..++..+
T Consensus       258 ~~lY~aD~~~~~I~~~d~dG-~~~~~~~~~~~~~P~giav-~~~-~ly~td~~~~~V~~~~~~~  318 (386)
T 3v65_B          258 RRMYWVDAKHHVIERANLDG-SHRKAVISQGLPHPFAITV-FED-SLYWTDWHTKSINSANKFT  318 (386)
T ss_dssp             TEEEEEETTTTEEEEECTTS-CSCEEEECSSCSSEEEEEE-ETT-EEEEEETTTTEEEEEETTT
T ss_pred             CEEEEEECCCCEEEEEeCCC-CeeEEEEECCCCCceEEEE-ECC-EEEEeeCCCCeEEEEECCC
Confidence            75777777778999999874 2222223323345577777 344 6666766778888888544

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.84  E-value=3.4e-06  Score=73.10  Aligned_cols=257  Identities=10%  Similarity=0.095  Sum_probs=137.4

Q ss_pred             ceEEeeecC-CCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCC--
Q 019059           67 EIWDLSSCP-FDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEE--  143 (346)
Q Consensus        67 ~v~~~~~~~-~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~--  143 (346)
                      ....++++| ++..|.++-    ..+.|+.+|++         ... +..+.........++|+++++.++++...++  
T Consensus       138 ~P~~lavdp~~~g~Lyv~d----~~~~I~~id~~---------~~~-v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~  203 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVG----EQHPTRLIDFE---------KEY-VSTVYSGLSKVRTICWTHEADSMIITNDQNNND  203 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEE----BTEEEEEEETT---------TTE-EEEEECCCSCEEEEEECTTSSEEEEEECCSCTT
T ss_pred             CCCEEEECCCCCCeEEEEe----CCCcEEEEECC---------CCE-EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcc
Confidence            446788998 466666652    22788888876         222 2333334456789999999986455543222  


Q ss_pred             --eEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEe-cCCeEEEEEccCCCccceeecc--c-eeEEEeC
Q 019059          144 --NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT-CESSVQFWDLRSMGKTNSIEHA--H-VRNVDYD  217 (346)
Q Consensus       144 --~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~--~-v~~~~~~  217 (346)
                        .+.+.+............ .    ......++++|++..|+++. .++.|..+|...+........+  . ...++|+
T Consensus       204 ~~~v~~~~~~g~~~~~~~l~-~----~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~  278 (430)
T 3tc9_A          204 RPNNYILTRESGFKVITELT-K----GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFH  278 (430)
T ss_dssp             SEEEEEEEGGGTSCSEEEEE-E----CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEEC
T ss_pred             cceEEEEeCCCceeeeeeec-c----CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEc
Confidence              344444332211111111 1    12467788999444455544 6789999998866532222211  2 8899999


Q ss_pred             CCCCcEEEEecCCCeEEEEEcccCCcc---eeeecCC---------------CcceE-EEEeC--------CCCCcEEEE
Q 019059          218 TKKKHLLVTAADESGIHLWDLRMLKAP---IQELPGH---------------THWTW-AVCCN--------PEYDGFILS  270 (346)
Q Consensus       218 ~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~---------------~~~v~-~v~~~--------~~~~~~l~s  270 (346)
                      |+++.++++-...+.|..++.......   +..+.+.               -.... .+...        +++ .+.++
T Consensus       279 pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g-~lyva  357 (430)
T 3tc9_A          279 PSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEY-DFYFC  357 (430)
T ss_dssp             TTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCE-EEEEE
T ss_pred             CCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCC-eEEEE
Confidence            999856666667789999887632111   1122111               01122 34442        345 55555


Q ss_pred             ecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeecC
Q 019059          271 AGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLEK  346 (346)
Q Consensus       271 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~~  346 (346)
                      -...+.|+.++..- ..............-...+...  ....-.....|+++|++..++++-....+|+.++++.
T Consensus       358 D~~n~~I~~i~~~G-~v~~~~g~g~~~~~G~~dG~~~--~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e~  430 (430)
T 3tc9_A          358 DRENHCIRILTPQG-RVTTFAGRGSNGTSGYNDGDLR--QEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYEE  430 (430)
T ss_dssp             EGGGTEEEEECTTS-EEEEEEECCTTSSSSCBCEETT--TTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEECC
T ss_pred             ECCCcEEEEECCCC-cEEEEEeCCCCCCCcccCCCch--hhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccCC
Confidence            55567788777321 0000000000000000000000  0001124689999995334888877888999998874

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.82  E-value=4.6e-06  Score=70.98  Aligned_cols=222  Identities=10%  Similarity=-0.011  Sum_probs=127.1

Q ss_pred             CCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCce-----EEEEeecCCCCcEEEEecCCeEEEEEcC
Q 019059           77 DQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKI-----NCVLWWSSGRHDKLVSIDEENIFLWSLD  151 (346)
Q Consensus        77 ~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~~~~~~~~~~~~~~~~d~~i~vwd~~  151 (346)
                      +..+++.    ..++.|..+|..         +++.+-.........     ...... ++.  ++++..++.+..+|..
T Consensus       143 ~~~v~v~----~~~g~l~~~d~~---------tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~--v~~g~~~g~l~~~d~~  206 (376)
T 3q7m_A          143 DGLVLIH----TSNGQLQALNEA---------DGAVKWTVNLDMPSLSLRGESAPTTA-FGA--AVVGGDNGRVSAVLME  206 (376)
T ss_dssp             TTEEEEE----CTTSEEEEEETT---------TCCEEEEEECCC-----CCCCCCEEE-TTE--EEECCTTTEEEEEETT
T ss_pred             CCEEEEE----cCCCeEEEEECC---------CCcEEEEEeCCCCceeecCCCCcEEE-CCE--EEEEcCCCEEEEEECC
Confidence            3355553    578889999987         455544443221110     111222 333  6667778999999998


Q ss_pred             CCCCCceeeecccCCCc--eeeEEEEeCC--CCCcEEEEecCCeEEEEEccCCCccceeeccceeEEEeCCCCCcEEEEe
Q 019059          152 CSNKNAQVQSKQSSGML--HYLSGGAWDP--HDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTA  227 (346)
Q Consensus       152 ~~~~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  227 (346)
                      +++...........+..  ..+..+.-.|  .+..+++++.++.+..+|.++++............+...  +. .++.+
T Consensus       207 tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~--~~-~l~~~  283 (376)
T 3q7m_A          207 QGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGSVNDFIVD--GN-RIYLV  283 (376)
T ss_dssp             TCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCCCEEEEEEE--TT-EEEEE
T ss_pred             CCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCCCCCCceEE--CC-EEEEE
Confidence            87755444322111000  0000011111  246677888899999999999987765543334444443  33 56677


Q ss_pred             cCCCeEEEEEcccCCcceeeecC-CCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccc
Q 019059          228 ADESGIHLWDLRMLKAPIQELPG-HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSL  306 (346)
Q Consensus       228 ~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  306 (346)
                      +.++.+..+|.++. +.+..... ....+......  + ..|+.++.+|.|.++|..+                   ++.
T Consensus       284 ~~~g~l~~~d~~tG-~~~w~~~~~~~~~~~~~~~~--~-~~l~v~~~~g~l~~~d~~t-------------------G~~  340 (376)
T 3q7m_A          284 DQNDRVMALTIDGG-VTLWTQSDLLHRLLTSPVLY--N-GNLVVGDSEGYLHWINVED-------------------GRF  340 (376)
T ss_dssp             ETTCCEEEEETTTC-CEEEEECTTTTSCCCCCEEE--T-TEEEEECTTSEEEEEETTT-------------------CCE
T ss_pred             cCCCeEEEEECCCC-cEEEeecccCCCcccCCEEE--C-CEEEEEeCCCeEEEEECCC-------------------CcE
Confidence            78899999999874 34443331 12222223332  3 5688888899999999998                   666


Q ss_pred             ccccccccceeeE-EEeCCCCCcEEEEeecCCeEEEee
Q 019059          307 LNSYSDYEDSVYG-LAWSSREPWIFASLSYDGRVRNHM  343 (346)
Q Consensus       307 ~~~~~~~~~~v~~-~~~~~~~~~~l~s~~~d~~v~vw~  343 (346)
                      +.........+.. ... .++  .|..++.+|.|+.|+
T Consensus       341 ~~~~~~~~~~~~~~~~~-~~~--~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          341 VAQQKVDSSGFQTEPVA-ADG--KLLIQAKDGTVYSIT  375 (376)
T ss_dssp             EEEEECCTTCBCSCCEE-ETT--EEEEEBTTSCEEEEE
T ss_pred             EEEEecCCCcceeCCEE-ECC--EEEEEeCCCEEEEEe
Confidence            5544432222222 222 233  567788899999886

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.81  E-value=1.4e-05  Score=63.46  Aligned_cols=205  Identities=12%  Similarity=0.121  Sum_probs=130.4

Q ss_pred             eeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeec-cCCceEEEEeecCCCCcEEE
Q 019059           60 GLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA-HVGKINCVLWWSSGRHDKLV  138 (346)
Q Consensus        60 ~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~  138 (346)
                      .+.+-.+.+..++|.|++..|+++.   ..++.|...|..          ++.++.+.. -....-.+++.+++. ++++
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~---d~~~~I~~ld~~----------g~v~~~i~l~g~~D~EGIa~~~~g~-~~vs   86 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTI---NKPAAIVEMTTN----------GDLIRTIPLDFVKDLETIEYIGDNQ-FVIS   86 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEE---ETTEEEEEEETT----------CCEEEEEECSSCSSEEEEEECSTTE-EEEE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEE---CCCCeEEEEeCC----------CCEEEEEecCCCCChHHeEEeCCCE-EEEE
Confidence            4445557899999999988888863   456777777764          445555432 124677889988876 3444


Q ss_pred             EecCCeEEEEEcCCCCCCceeeecc----cCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccC---CCccceeec---
Q 019059          139 SIDEENIFLWSLDCSNKNAQVQSKQ----SSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRS---MGKTNSIEH---  208 (346)
Q Consensus       139 ~~~d~~i~vwd~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~~---  208 (346)
                      .-.++.+.++++.............    .........+++|+|.+..|+++.......+|.+..   ...+..+..   
T Consensus        87 ~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~  166 (255)
T 3qqz_A           87 DERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKAL  166 (255)
T ss_dssp             ETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHH
T ss_pred             ECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhh
Confidence            4456889999987654311111111    112344679999999998888887654445554431   111111110   


Q ss_pred             ---c---ceeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCC---------cceEEEEeCCCCCcEEEEecC
Q 019059          209 ---A---HVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHT---------HWTWAVCCNPEYDGFILSAGT  273 (346)
Q Consensus       209 ---~---~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------~~v~~v~~~~~~~~~l~s~~~  273 (346)
                         .   .+.+++++|....+++.......+..+|..  ++++..+.-..         .....|+|.++| ++.+ .++
T Consensus       167 ~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~--g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G-~lyI-vsE  242 (255)
T 3qqz_A          167 QRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV--GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASG-NIYI-VSE  242 (255)
T ss_dssp             HHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT--CCEEEEEECSTTGGGCSSCCCSEEEEEECTTC-CEEE-EET
T ss_pred             ccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC--CCEEEEEEcCCccCCcccccCCCCeeEECCCC-CEEE-EcC
Confidence               1   178999999888788888888899999976  33444443221         256889999999 6444 466


Q ss_pred             CCeEEEEec
Q 019059          274 DSTVNLWLV  282 (346)
Q Consensus       274 d~~i~iwd~  282 (346)
                      -+.++.+..
T Consensus       243 ~n~~y~f~~  251 (255)
T 3qqz_A          243 PNRFYRFTP  251 (255)
T ss_dssp             TTEEEEEEC
T ss_pred             CceEEEEEe
Confidence            666666644

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.81  E-value=2.1e-05  Score=65.16  Aligned_cols=221  Identities=11%  Similarity=0.030  Sum_probs=130.0

Q ss_pred             CcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCC---CCCceeeecccC
Q 019059           89 ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCS---NKNAQVQSKQSS  165 (346)
Q Consensus        89 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~---~~~~~~~~~~~~  165 (346)
                      ....|+..+++         ..+....+ ........++|++.+..++++-...+.|..+++...   .....+...   
T Consensus         8 ~~~~I~~i~~~---------~~~~~~~~-~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~---   74 (316)
T 1ijq_A            8 NRHEVRKMTLD---------RSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR---   74 (316)
T ss_dssp             CBSSEEEEETT---------SCCCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS---
T ss_pred             CCCeEEEEECC---------CcceEehh-cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeC---
Confidence            44578888887         22222223 234567899999887765666566789999998751   212222211   


Q ss_pred             CCceeeEEEEeCCCCCcEEEE-ecCCeEEEEEccCCCccceeecc-c-eeEEEeCCCCCcEEEEecCC-CeEEEEEcccC
Q 019059          166 GMLHYLSGGAWDPHDVNAVAA-TCESSVQFWDLRSMGKTNSIEHA-H-VRNVDYDTKKKHLLVTAADE-SGIHLWDLRML  241 (346)
Q Consensus       166 ~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~-~-v~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~  241 (346)
                       ......++++.+.+..|+.+ ...+.|.++|+........+... . ...++++|.+..++++.... +.|..+++.- 
T Consensus        75 -~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-  152 (316)
T 1ijq_A           75 -DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-  152 (316)
T ss_dssp             -SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-
T ss_pred             -CCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-
Confidence             11245788888766666655 45789999998754332222212 2 89999999776466665443 6888888763 


Q ss_pred             Ccceeee-cCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEE
Q 019059          242 KAPIQEL-PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGL  320 (346)
Q Consensus       242 ~~~~~~~-~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  320 (346)
                       .....+ ...-...+.++++|++..+.++-+..+.|..+|+....                 .+.+......-.....+
T Consensus       153 -~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-----------------~~~~~~~~~~~~~P~gi  214 (316)
T 1ijq_A          153 -VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-----------------RKTILEDEKRLAHPFSL  214 (316)
T ss_dssp             -CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-----------------CEEEEECTTTTSSEEEE
T ss_pred             -CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-----------------eEEEeecCCccCCcEEE
Confidence             223333 22335678999998873555555667799999987400                 11111111111224566


Q ss_pred             EeCCCCCcEEEEeecCCeEEEeee
Q 019059          321 AWSSREPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       321 ~~~~~~~~~l~s~~~d~~v~vw~~  344 (346)
                      ++.. + .++++-...+.|..++.
T Consensus       215 av~~-~-~ly~~d~~~~~V~~~~~  236 (316)
T 1ijq_A          215 AVFE-D-KVFWTDIINEAIFSANR  236 (316)
T ss_dssp             EEET-T-EEEEEETTTTEEEEEET
T ss_pred             EEEC-C-EEEEEECCCCeEEEEeC
Confidence            6643 3 46666666777777663

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.80  E-value=1.7e-06  Score=80.60  Aligned_cols=193  Identities=11%  Similarity=-0.007  Sum_probs=113.6

Q ss_pred             ceEEEEee-cCCCCcEEEEecCC----eEEEEEcCCC-CCCceeeecccCCCceeeEEEEeCCCCCcEEEEecC-----C
Q 019059          122 KINCVLWW-SSGRHDKLVSIDEE----NIFLWSLDCS-NKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE-----S  190 (346)
Q Consensus       122 ~i~~~~~~-~~~~~~~~~~~~d~----~i~vwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~  190 (346)
                      .+...+|| |||+.++++...+|    .|+++|+.++ +......       ......++|+||++.|+....+     .
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~-------~~~~~~~~WspDg~~l~y~~~d~~~~~~  247 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKV-------SGTNGEIVWGPDHTSLFYVTKDETLREN  247 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCE-------EEECSCCEECSSTTEEEEEEECTTCCEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccc-------cCceeeEEEecCCCEEEEEEECCCCCCC
Confidence            67889999 99997555554333    4999999887 5221111       1124578999999988887754     3


Q ss_pred             eEEEEEccCCCcc--ceeecc--c-eeEEEeCCCCCcEEEEecC--CCeEEEEEcccCCcce--eeec-CCCcceEEEEe
Q 019059          191 SVQFWDLRSMGKT--NSIEHA--H-VRNVDYDTKKKHLLVTAAD--ESGIHLWDLRMLKAPI--QELP-GHTHWTWAVCC  260 (346)
Q Consensus       191 ~i~i~d~~~~~~~--~~~~~~--~-v~~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~--~~~~-~~~~~v~~v~~  260 (346)
                      .|+++++.+++..  ..+...  . ...+.|+|++++++++...  ...|.++|+.......  ..+. .......++.|
T Consensus       248 ~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~  327 (751)
T 2xe4_A          248 KVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQM  327 (751)
T ss_dssp             EEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEE
T ss_pred             EEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEee
Confidence            6888888876532  222211  2 6788999999955555433  3468888887632122  3333 23345555655


Q ss_pred             CCCCCcEEEEecCC--C--eEEEEecCCCCCCCCCcccccCCccccccccccc-ccccc--ceeeEEEeCCCCCcEEEEe
Q 019059          261 NPEYDGFILSAGTD--S--TVNLWLVSTSNHDELPSESLVESPNQRANSLLNS-YSDYE--DSVYGLAWSSREPWIFASL  333 (346)
Q Consensus       261 ~~~~~~~l~s~~~d--~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~v~~~~~~~~~~~~l~s~  333 (346)
                      +..+ .+++....+  +  .|..+|+..                   ...... +..+.  ..+.++.+.  +..++++.
T Consensus       328 ~~g~-~l~~~t~~~~a~~~~L~~~d~~~-------------------~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~  385 (751)
T 2xe4_A          328 HGTS-HLVILTNEGGAVNHKLLIAPRGQ-------------------PSDWSHVLVDHSEDVFMESIAVR--SNYLVVAG  385 (751)
T ss_dssp             ETTT-EEEEEECTTTCTTCEEEEEETTS-------------------TTCCCCEEECCCSSEEEEEEEEC--SSEEEEEE
T ss_pred             eeCC-EEEEEeCCCCCCCcEEEEEcCCC-------------------cccceeeEECCCCCcEEEEEEEE--CCEEEEEE
Confidence            5444 555555444  3  566666553                   111111 11122  135566665  44578888


Q ss_pred             ecCCeEEEee
Q 019059          334 SYDGRVRNHM  343 (346)
Q Consensus       334 ~~d~~v~vw~  343 (346)
                      ..++..++|-
T Consensus       386 ~~~g~~~l~~  395 (751)
T 2xe4_A          386 RRAGLTRIWT  395 (751)
T ss_dssp             EETTEEEEEE
T ss_pred             EeCCEEEEEE
Confidence            8888766553

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.77  E-value=1.6e-07  Score=78.46  Aligned_cols=165  Identities=4%  Similarity=-0.108  Sum_probs=98.3

Q ss_pred             CCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCC
Q 019059           88 GESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGM  167 (346)
Q Consensus        88 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~  167 (346)
                      ..++.|..|| .         +++.+.........+.++...+++.  +.+++.+  |..+|. +++.........    
T Consensus        37 t~~~~l~~~d-~---------~g~~~~~~~~~~~~~~~~~~~~~g~--l~v~t~~--l~~~d~-~g~~~~~~~~~~----   97 (330)
T 3hxj_A           37 SSNKNLYAIN-T---------DGSVKWFFKSGEIIECRPSIGKDGT--IYFGSDK--VYAINP-DGTEKWRFDTKK----   97 (330)
T ss_dssp             STTTTTEEEC-T---------TSCEEESSCGGGEEEECCEETTTTE--ECCSSCE--EEEECC-CGGGGGGSCC------
T ss_pred             cCCCEEEEEC-C---------CCcEEEEEecCCCcccceEEecCCc--EEEecCc--EEEECC-CCcEEEEEECCC----
Confidence            4577788888 5         3444444433444556677766766  5555433  888875 333322222111    


Q ss_pred             ceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc--eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcce
Q 019059          168 LHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPI  245 (346)
Q Consensus       168 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  245 (346)
                       .......+.  +..+.+++.++.|..+|.. ++.........  +.++...+++.  +..++.++.+..+|..  ...+
T Consensus        98 -~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~--l~vgt~~~~l~~~d~~--g~~~  169 (330)
T 3hxj_A           98 -AIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT--IYVGSNDNYLYAINPD--GTEK  169 (330)
T ss_dssp             ----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC--EEEECTTSEEEEECTT--SCEE
T ss_pred             -CcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE--EEEEcCCCEEEEECCC--CCEe
Confidence             011222222  4567778888999999988 66554444333  66777777775  5556777899999987  3344


Q ss_pred             eeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          246 QELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       246 ~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      ..+......+.++...+++ .+++ ++  +.|..+| ..
T Consensus       170 ~~~~~~~~~~~~~~~d~~g-~l~v-~t--~~l~~~d-~~  203 (330)
T 3hxj_A          170 WRFKTNDAITSAASIGKDG-TIYF-GS--DKVYAIN-PD  203 (330)
T ss_dssp             EEEECSSCCCSCCEECTTC-CEEE-ES--SSEEEEC-TT
T ss_pred             EEEecCCCceeeeEEcCCC-EEEE-Ee--CEEEEEC-CC
Confidence            4555445567777777777 5444 44  6788888 44

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.73  E-value=3.9e-05  Score=63.57  Aligned_cols=222  Identities=9%  Similarity=-0.046  Sum_probs=134.3

Q ss_pred             CeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCC
Q 019059           42 NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVG  121 (346)
Q Consensus        42 ~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~  121 (346)
                      +.|..+++.......    +......+.+++|.+.++.|+.+   ....+.|..+++.....    . ......+...-.
T Consensus        10 ~~I~~i~~~~~~~~~----~~~~~~~p~g~~~d~~~~~ly~~---D~~~~~I~~~~~~g~~~----~-~~~~~~~~~~~~   77 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNRIYWS---DLSQRMICSTQLDRAHG----V-SSYDTVISRDIQ   77 (316)
T ss_dssp             SSEEEEETTSCCCEE----EECSCSSEEEEEEETTTTEEEEE---ETTTTEEEEEEC-------------CEEEECSSCS
T ss_pred             CeEEEEECCCcceEe----hhcCCCceEEEEEEeCCCEEEEE---ECCCCcEEEEECCCCCC----C-cccEEEEeCCCC
Confidence            456667666543221    22234567899999987777776   35567888888761000    0 111112222223


Q ss_pred             ceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecC--CeEEEEEccC
Q 019059          122 KINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE--SSVQFWDLRS  199 (346)
Q Consensus       122 ~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~i~d~~~  199 (346)
                      ....+++.+.+..++++-...+.|.+.+++... ...+....    .....+++++|.+..|+.+...  +.|...++..
T Consensus        78 ~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~-~~~~~~~~----~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG  152 (316)
T 1ijq_A           78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFREN----GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG  152 (316)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEEECT----TCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             CcCEEEEeecCCeEEEEECCCCEEEEEeCCCCc-eEEEEECC----CCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC
Confidence            457888887666555555667899999987432 22222211    2256889999977777766542  6888888764


Q ss_pred             CCccceeecc--c-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeec---CCCcceEEEEeCCCCCcEEEEecC
Q 019059          200 MGKTNSIEHA--H-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP---GHTHWTWAVCCNPEYDGFILSAGT  273 (346)
Q Consensus       200 ~~~~~~~~~~--~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~v~~v~~~~~~~~~l~s~~~  273 (346)
                      . ....+...  . .+.+++++++..++++-...+.|..+|+.. . ..+.+.   ........+++. .+ .++++-..
T Consensus       153 ~-~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg-~-~~~~~~~~~~~~~~P~giav~-~~-~ly~~d~~  227 (316)
T 1ijq_A          153 V-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-G-NRKTILEDEKRLAHPFSLAVF-ED-KVFWTDII  227 (316)
T ss_dssp             C-CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-C-SCEEEEECTTTTSSEEEEEEE-TT-EEEEEETT
T ss_pred             C-CeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC-C-ceEEEeecCCccCCcEEEEEE-CC-EEEEEECC
Confidence            3 33333211  2 899999988775667766778999999874 2 222222   112345677774 34 66667777


Q ss_pred             CCeEEEEecCCC
Q 019059          274 DSTVNLWLVSTS  285 (346)
Q Consensus       274 d~~i~iwd~~~~  285 (346)
                      .+.|..++..++
T Consensus       228 ~~~V~~~~~~~g  239 (316)
T 1ijq_A          228 NEAIFSANRLTG  239 (316)
T ss_dssp             TTEEEEEETTTC
T ss_pred             CCeEEEEeCCCC
Confidence            789999987654

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.72  E-value=3.5e-05  Score=63.86  Aligned_cols=221  Identities=8%  Similarity=-0.052  Sum_probs=129.6

Q ss_pred             CcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCc
Q 019059           89 ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGML  168 (346)
Q Consensus        89 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  168 (346)
                      ....|+..+++..       .......+ .......+++|.+.+..++.+-...+.|..++++.......+....    .
T Consensus        11 ~~~~I~~i~l~~~-------~~~~~~~~-~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~----l   78 (318)
T 3sov_A           11 NRRDLRLVDATNG-------KENATIVV-GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG----L   78 (318)
T ss_dssp             CEEEEEEEETTCT-------TSCCEEEE-EEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEEC----C
T ss_pred             ccCeEEEEECCCC-------ceEEEEEe-cCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCC----C
Confidence            5568888888721       10111111 1223567899998776555565667899999987653222222221    1


Q ss_pred             eeeEEEEeCCCCCcEEEEe-cCCeEEEEEccCCCccceeeccc--eeEEEeCCCCCcEEEEec-CCCeEEEEEcccCCcc
Q 019059          169 HYLSGGAWDPHDVNAVAAT-CESSVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAA-DESGIHLWDLRMLKAP  244 (346)
Q Consensus       169 ~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~  244 (346)
                      ....++++.+.+..|+.+. ..+.|.++++........+....  ...++++|.+..++.+-. ..+.|...++.- . .
T Consensus        79 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~-~  156 (318)
T 3sov_A           79 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-S-S  156 (318)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-C-S
T ss_pred             CCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-C-C
Confidence            2466788887666666554 56789999987543322222122  899999987664555542 357888888763 2 2


Q ss_pred             eeee-cCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeC
Q 019059          245 IQEL-PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWS  323 (346)
Q Consensus       245 ~~~~-~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  323 (346)
                      ...+ ...-...+.|+++|++..+.++-+..+.|..+|+..                   ........+.......+++.
T Consensus       157 ~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG-------------------~~~~~~~~~~~~~P~glav~  217 (318)
T 3sov_A          157 RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG-------------------TNRQAVVKGSLPHPFALTLF  217 (318)
T ss_dssp             CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-------------------CSCEEEECSCCSCEEEEEEE
T ss_pred             eEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC-------------------CceEEEecCCCCCceEEEEe
Confidence            2232 222345689999997735555556678999999874                   11111111122234566664


Q ss_pred             CCCCcEEEEeecCCeEEEeee
Q 019059          324 SREPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       324 ~~~~~~l~s~~~d~~v~vw~~  344 (346)
                      .+  .++.+-...+.|..++.
T Consensus       218 ~~--~lywtd~~~~~V~~~~~  236 (318)
T 3sov_A          218 ED--ILYWTDWSTHSILACNK  236 (318)
T ss_dssp             TT--EEEEEETTTTEEEEEET
T ss_pred             CC--EEEEEecCCCeEEEEEC
Confidence            32  36666556667776664

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.71  E-value=1.2e-06  Score=80.76  Aligned_cols=151  Identities=8%  Similarity=0.002  Sum_probs=90.0

Q ss_pred             CCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeecc--CCceEEEEee---cCCCCcEEEEe------cCCeE
Q 019059           77 DQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH--VGKINCVLWW---SSGRHDKLVSI------DEENI  145 (346)
Q Consensus        77 ~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~---~~~~~~~~~~~------~d~~i  145 (346)
                      +..+++.    +.|+.|..+|..         +++.+-.+...  ......+..+   .++.  ++++.      .++.|
T Consensus       121 ~g~v~v~----~~dg~l~AlDa~---------TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~--v~vg~~~~~~~~~g~v  185 (689)
T 1yiq_A          121 KGKVYVG----VLDGRLEAIDAK---------TGQRAWSVDTRADHKRSYTITGAPRVVNGK--VVIGNGGAEFGVRGYV  185 (689)
T ss_dssp             TTEEEEE----CTTSEEEEEETT---------TCCEEEEEECCSCTTSCCBCCSCCEEETTE--EEECCBCTTTCCBCEE
T ss_pred             CCEEEEE----ccCCEEEEEECC---------CCCEeeeecCcCCCCCCccccCCcEEECCE--EEEEeCCCccCCCCEE
Confidence            4455553    578899999987         55555444321  1110111111   1443  45542      26899


Q ss_pred             EEEEcCCCCCCceeeeccc-C-------------------------CCceeeEEEEeCCCCCcEEEEecCC---------
Q 019059          146 FLWSLDCSNKNAQVQSKQS-S-------------------------GMLHYLSGGAWDPHDVNAVAATCES---------  190 (346)
Q Consensus       146 ~vwd~~~~~~~~~~~~~~~-~-------------------------~~~~~v~~~~~~~~~~~l~~~~~d~---------  190 (346)
                      +.||..+++.......... .                         +.......++++|+...++++..++         
T Consensus       186 ~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~  265 (689)
T 1yiq_A          186 TAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRS  265 (689)
T ss_dssp             EEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHH
T ss_pred             EEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCC
Confidence            9999999887665542110 0                         0000112567888888888887765         


Q ss_pred             ----------eEEEEEccCCCccceeecc-c------------eeEEEeCCCCC--cEEEEecCCCeEEEEEcccCCcce
Q 019059          191 ----------SVQFWDLRSMGKTNSIEHA-H------------VRNVDYDTKKK--HLLVTAADESGIHLWDLRMLKAPI  245 (346)
Q Consensus       191 ----------~i~i~d~~~~~~~~~~~~~-~------------v~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~  245 (346)
                                .|..+|.++++.+-.+... +            +..+.+  +|.  ..++.++.+|.++++|.++ ++++
T Consensus       266 ~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~--~G~~~~~v~~~~~~G~l~~lD~~t-G~~l  342 (689)
T 1yiq_A          266 QAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPI--DGKPRKVLMQAPKNGFFYVIDRAT-GELL  342 (689)
T ss_dssp             TTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE--TTEEEEEEEECCTTSEEEEEETTT-CCEE
T ss_pred             CCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeecc--CCcEEEEEEEECCCCeEEEEECCC-CCEe
Confidence                      3999999999987666532 1            112222  332  2678889999999999887 4343

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.71  E-value=2.3e-05  Score=67.87  Aligned_cols=254  Identities=11%  Similarity=0.039  Sum_probs=140.9

Q ss_pred             ceEEeeecCC--CCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecC--
Q 019059           67 EIWDLSSCPF--DQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDE--  142 (346)
Q Consensus        67 ~v~~~~~~~~--~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d--  142 (346)
                      ....++|.|+  +..|..+    ...+.|+.++..         ..... .+.........+++++++. ++++....  
T Consensus       140 ~P~gvavd~~s~~g~Lyv~----D~~~~I~~id~~---------~g~v~-~~~~~~~~P~giavd~dG~-lyVad~~~~~  204 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWV----GQRDAFRHVDFV---------NQYVD-IKTTNIGQCADVNFTLNGD-MVVVDDQSSD  204 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEE----CBTSCEEEEETT---------TTEEE-EECCCCSCEEEEEECTTCC-EEEEECCSCT
T ss_pred             CCceEEEccccCCCEEEEE----eCCCCEEEEECC---------CCEEE-EeecCCCCccEEEECCCCC-EEEEcCCCCc
Confidence            4568899984  4556654    222788888875         33332 3333445688999999999 55554311  


Q ss_pred             -C-eEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEe-cCCeEEEEEccCCCcccee-eccc---eeEEE
Q 019059          143 -E-NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT-CESSVQFWDLRSMGKTNSI-EHAH---VRNVD  215 (346)
Q Consensus       143 -~-~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~-~~~~---v~~~~  215 (346)
                       . .+...+............     .......++++|+...|+.+. .++.|+.+|..++.....+ ..+.   ...++
T Consensus       205 ~~~gv~~~~~~~~~~~~~~~~-----~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia  279 (433)
T 4hw6_A          205 TNTGIYLFTRASGFTERLSLC-----NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIV  279 (433)
T ss_dssp             TSEEEEEECGGGTTCCEEEEE-----ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEE
T ss_pred             ccceEEEEECCCCeecccccc-----ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEE
Confidence             1 233333332211111111     112457789999444555554 5788999998877652222 2111   45799


Q ss_pred             eCCCCCcEEEEecCCCeEEEEEcccCCcc---eeeecCC---------------CcceEEEEe---------CCCCCcEE
Q 019059          216 YDTKKKHLLVTAADESGIHLWDLRMLKAP---IQELPGH---------------THWTWAVCC---------NPEYDGFI  268 (346)
Q Consensus       216 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~---------------~~~v~~v~~---------~~~~~~~l  268 (346)
                      |+|+++.++++-...+.|+.+++......   ...+.+.               -.....+++         .+++ .+.
T Consensus       280 ~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g-~ly  358 (433)
T 4hw6_A          280 WHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEY-DFY  358 (433)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCE-EEE
T ss_pred             EeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCC-cEE
Confidence            99999856666667789999886531111   1122111               123567888         7777 777


Q ss_pred             EEecCCCeEEEEecCCCCCCCCCcccccCCccc-cccccccccccccceeeEEEeC-CCCCcEEEEeecCCeEEEeeecC
Q 019059          269 LSAGTDSTVNLWLVSTSNHDELPSESLVESPNQ-RANSLLNSYSDYEDSVYGLAWS-SREPWIFASLSYDGRVRNHMLEK  346 (346)
Q Consensus       269 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~s~~~d~~v~vw~~~~  346 (346)
                      ++-...+.|+.++..- ..... .......... ..+...  ....-.....|+++ +++. ++++-....+|+.++++.
T Consensus       359 vaD~~n~~I~~~~~~G-~v~t~-~G~g~~~~~G~~dG~~~--~~~~~~~P~giavd~~~g~-lyVaD~~n~rIr~i~~e~  433 (433)
T 4hw6_A          359 FCDRDSHTVRVLTPEG-RVTTY-AGRGNSREWGYVDGELR--SQALFNHPTSIAYDMKRKC-FYIGDCDNHRVRKIAPEE  433 (433)
T ss_dssp             EEETTTTEEEEECTTS-EEEEE-ECCCTTCSSCCBCEETT--TTCBCSSEEEEEEETTTTE-EEEEEGGGTEEEEEEECC
T ss_pred             EEECCCCEEEEECCCC-CEEEE-EeCCCCCccccCCCccc--cccEeCCCcEEEEECCCCE-EEEEeCCCCEEEEEecCC
Confidence            7767778899887531 00000 0000000000 000000  00011236889999 5664 778777888999998863

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.71  E-value=3e-05  Score=66.50  Aligned_cols=223  Identities=8%  Similarity=-0.042  Sum_probs=134.8

Q ss_pred             CeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCC
Q 019059           42 NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVG  121 (346)
Q Consensus        42 ~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~  121 (346)
                      +.|+.+++......    .+......+.+++|.+.+..|..+   ....+.|..+++.....     .......+.....
T Consensus        92 ~~I~~i~l~~~~~~----~~~~~~~~~~~l~~d~~~~~lyws---D~~~~~I~~~~~~g~~~-----~~~~~~~~~~~~~  159 (400)
T 3p5b_L           92 HEVRKMTLDRSEYT----SLIPNLRNVVALDTEVASNRIYWS---DLSQRMICSTQLDRAHG-----VSSYDTVISRDIQ  159 (400)
T ss_dssp             TEEEEECTTSCSCE----EEECSCSCEEEEEEETTTTEEEEE---ETTTTEEEEEEC-----------CCCEEEECSSCS
T ss_pred             ceeEEEccCCccee----EeccccCcceEEeeeeccCceEEE---ecCCCeEEEEEcccCCC-----CCcceEEEeCCCC
Confidence            55666655543322    223345678899999987777775   34567888888761000     0112222222344


Q ss_pred             ceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec--CCeEEEEEccC
Q 019059          122 KINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC--ESSVQFWDLRS  199 (346)
Q Consensus       122 ~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~i~d~~~  199 (346)
                      ....+++.+.+..++++-...+.|.+.+++... ...+....    .....++++.|.+..|+.+..  .+.|...++..
T Consensus       160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~-~~~l~~~~----~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG  234 (400)
T 3p5b_L          160 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFREN----GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG  234 (400)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEECTTTCS-EEEEEECS----SCCEEEEEEETTTTEEEEEECSSSCCEEEEETTS
T ss_pred             CcccEEEEecCCceEEEECCCCeEEEEeCCCCc-eEEEEeCC----CCCcceEEEecccCeEEEEeCCCCCEEEEEeCCC
Confidence            577888888666555555667899999987443 22222211    225789999997777777653  47899888875


Q ss_pred             CCccceeecc-c-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeee-cC--CCcceEEEEeCCCCCcEEEEecCC
Q 019059          200 MGKTNSIEHA-H-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL-PG--HTHWTWAVCCNPEYDGFILSAGTD  274 (346)
Q Consensus       200 ~~~~~~~~~~-~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~--~~~~v~~v~~~~~~~~~l~s~~~d  274 (346)
                      ......+... . .+.|++++++..++++-...+.|..+|+.. . ....+ ..  .......+++. .+ .++.+-...
T Consensus       235 ~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG-~-~~~~~~~~~~~l~~P~gl~v~-~~-~lywtd~~~  310 (400)
T 3p5b_L          235 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-G-NRKTILEDEKRLAHPFSLAVF-ED-KVFWTDIIN  310 (400)
T ss_dssp             CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-C-CCEEEEECSSTTSSEEEEEEE-TT-EEEEEESSS
T ss_pred             CccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCC-C-ccEEEEeCCCCCCCCEEEEEe-CC-EEEEecCCC
Confidence            4433322222 2 899999988775666666678999999874 2 22222 21  12334566663 23 566666667


Q ss_pred             CeEEEEecCCC
Q 019059          275 STVNLWLVSTS  285 (346)
Q Consensus       275 ~~i~iwd~~~~  285 (346)
                      +.|..+|..++
T Consensus       311 ~~V~~~~~~~G  321 (400)
T 3p5b_L          311 EAIFSANRLTG  321 (400)
T ss_dssp             CSEEEEESSSC
T ss_pred             CeEEEEEcCCC
Confidence            88988886653

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.70  E-value=2.3e-05  Score=68.31  Aligned_cols=257  Identities=11%  Similarity=0.063  Sum_probs=140.6

Q ss_pred             ceEEeeecC-CCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeec---cCCceEEEEe-------ecCCCCc
Q 019059           67 EIWDLSSCP-FDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA---HVGKINCVLW-------WSSGRHD  135 (346)
Q Consensus        67 ~v~~~~~~~-~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~-------~~~~~~~  135 (346)
                      ....|+|.| +...|+++.   ...+.|++.|++         .......+..   .......++|       ++++..+
T Consensus       140 ~p~~la~dp~~~~~Lyv~~---~~~~~i~~ID~~---------~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~l  207 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICY---DGHKAIQLIDLK---------NRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYM  207 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEE---ETEEEEEEEETT---------TTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEE
T ss_pred             CCCEEEEccCCCCEEEEEE---CCCCeEEEEECC---------CCEEEEEEccCccccCCCcEEEEeecccccCCCCCEE
Confidence            456889998 466666653   234568888876         3222222222   1235789999       9999864


Q ss_pred             EEEEecCC------eEEEEEcCCCCCCc-----eeeecccCCCceeeEEEEeCCCCCcEEEEe-cCCeEEEEEcc-----
Q 019059          136 KLVSIDEE------NIFLWSLDCSNKNA-----QVQSKQSSGMLHYLSGGAWDPHDVNAVAAT-CESSVQFWDLR-----  198 (346)
Q Consensus       136 ~~~~~~d~------~i~vwd~~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~-----  198 (346)
                      +++...++      .|.+++........     .... .    -.....++.+|++..|+++. .++.|..+|+.     
T Consensus       208 yvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~-~----~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~  282 (496)
T 3kya_A          208 IVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIA-A----YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKT  282 (496)
T ss_dssp             EEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEE-E----ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHH
T ss_pred             EEEeCCCCCcccCceEEEEecCCCCceeecccceeec-c----CCCceEEEEcCCCCeEEEEECCCCEEEEEeccccccc
Confidence            55543331      36666544311121     1221 1    11456788999777766655 57889999998     


Q ss_pred             --CCCc-----------cce-eec--cc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcce---eeecCC---C---
Q 019059          199 --SMGK-----------TNS-IEH--AH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPI---QELPGH---T---  252 (346)
Q Consensus       199 --~~~~-----------~~~-~~~--~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~---~---  252 (346)
                        ++..           ... +..  .. ...|+|+|+++.++++-.....|+.+|.......+   ..+.+.   .   
T Consensus       283 ~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~  362 (496)
T 3kya_A          283 IKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYR  362 (496)
T ss_dssp             HHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCB
T ss_pred             ccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCccc
Confidence              5543           111 111  12 78999999998556666677889997765322111   222211   0   


Q ss_pred             ---------cceE-EEEeC-------CCCCcEEEEecCCCeEEEEecCCCCCCCCCccccc------CCccc-ccccccc
Q 019059          253 ---------HWTW-AVCCN-------PEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLV------ESPNQ-RANSLLN  308 (346)
Q Consensus       253 ---------~~v~-~v~~~-------~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~------~~~~~-~~~~~~~  308 (346)
                               .... .+...       +++ .++++-...+.|+.++..- ..... .....      ..... ..+.+..
T Consensus       363 DG~~~~a~f~~P~~gv~vd~~~~~~~~~g-~lyVaD~~N~rIr~i~~~G-~v~Ti-aG~g~~~~~~~~~~~G~~dG~~~~  439 (496)
T 3kya_A          363 DDVGTEARMNNPCQGVFVKNPDYTGEEEY-DFYFVDRLNFCVRKVTPEG-IVSTY-AGRGASTSLADGNQWGTDDGDLRE  439 (496)
T ss_dssp             CCBGGGCBCSSEEEEEEEECTTCCSSCCE-EEEEEEGGGTEEEEECTTC-BEEEE-EESCTTHHHHHSCSCCCCCEETTT
T ss_pred             CCcccccccCCCeEEEEEccccccccCCC-eEEEEECCCCEEEEEeCCC-CEEEE-ecccccccccCccccccCCCCchh
Confidence                     1123 34443       455 6666666678888887331 00000 00000      00000 0010000


Q ss_pred             ccccccceeeEEEeCCC-CCcEEEEeecCCeEEEeeecC
Q 019059          309 SYSDYEDSVYGLAWSSR-EPWIFASLSYDGRVRNHMLEK  346 (346)
Q Consensus       309 ~~~~~~~~v~~~~~~~~-~~~~l~s~~~d~~v~vw~~~~  346 (346)
                        ...-.....|+++++ +. ++++=....+||.+++++
T Consensus       440 --~a~f~~P~gIavd~~~g~-lyVaD~~N~rIrki~~~~  475 (496)
T 3kya_A          440 --VARFRDVSGLVYDDVKEM-FYVHDQVGHTIRTISMEQ  475 (496)
T ss_dssp             --TCCCSSEEEEEEETTTTE-EEEEETTTTEEEEEEECC
T ss_pred             --hhhcCCCcEEEEECCCCE-EEEEeCCCCEEEEEECCC
Confidence              011123688999997 64 777778889999998864

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.66  E-value=2.9e-05  Score=66.05  Aligned_cols=222  Identities=11%  Similarity=-0.043  Sum_probs=124.5

Q ss_pred             CCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCC
Q 019059           77 DQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKN  156 (346)
Q Consensus        77 ~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~  156 (346)
                      +..++++    +.++.|..+|..         +++.+-.............. .++.  +++++.++.|..+|..+++..
T Consensus       103 ~~~v~v~----~~~g~l~a~d~~---------tG~~~W~~~~~~~~~~~p~~-~~~~--v~v~~~~g~l~~~d~~tG~~~  166 (376)
T 3q7m_A          103 GGHVYIG----SEKAQVYALNTS---------DGTVAWQTKVAGEALSRPVV-SDGL--VLIHTSNGQLQALNEADGAVK  166 (376)
T ss_dssp             TTEEEEE----ETTSEEEEEETT---------TCCEEEEEECSSCCCSCCEE-ETTE--EEEECTTSEEEEEETTTCCEE
T ss_pred             CCEEEEE----cCCCEEEEEECC---------CCCEEEEEeCCCceEcCCEE-ECCE--EEEEcCCCeEEEEECCCCcEE
Confidence            4555554    367889999987         45554444332221111222 2343  677777899999999888765


Q ss_pred             ceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---------eeEEEeCC--CCCcEEE
Q 019059          157 AQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---------VRNVDYDT--KKKHLLV  225 (346)
Q Consensus       157 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---------v~~~~~~~--~~~~~l~  225 (346)
                      .....................  +..++++..++.|..+|..+++.........         +..+.-.|  .+. .++
T Consensus       167 W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~v~  243 (376)
T 3q7m_A          167 WTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNG-VVF  243 (376)
T ss_dssp             EEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETT-EEE
T ss_pred             EEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECC-EEE
Confidence            554432110000000111221  3567777788999999999998765554221         00011111  133 567


Q ss_pred             EecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccc
Q 019059          226 TAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANS  305 (346)
Q Consensus       226 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  305 (346)
                      .++.++.+..+|.++ .+.+....  ......+...  + ..++.++.++.|..+|..+                   ++
T Consensus       244 ~~~~~g~l~~~d~~t-G~~~w~~~--~~~~~~~~~~--~-~~l~~~~~~g~l~~~d~~t-------------------G~  298 (376)
T 3q7m_A          244 ALAYNGNLTALDLRS-GQIMWKRE--LGSVNDFIVD--G-NRIYLVDQNDRVMALTIDG-------------------GV  298 (376)
T ss_dssp             EECTTSCEEEEETTT-CCEEEEEC--CCCEEEEEEE--T-TEEEEEETTCCEEEEETTT-------------------CC
T ss_pred             EEecCcEEEEEECCC-CcEEeecc--CCCCCCceEE--C-CEEEEEcCCCeEEEEECCC-------------------Cc
Confidence            777889999999987 43443333  2233444443  4 5677778899999999988                   44


Q ss_pred             ccccccc-ccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          306 LLNSYSD-YEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       306 ~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      .+..... ....+......  +. .|..++.+|.|.++|.+
T Consensus       299 ~~w~~~~~~~~~~~~~~~~--~~-~l~v~~~~g~l~~~d~~  336 (376)
T 3q7m_A          299 TLWTQSDLLHRLLTSPVLY--NG-NLVVGDSEGYLHWINVE  336 (376)
T ss_dssp             EEEEECTTTTSCCCCCEEE--TT-EEEEECTTSEEEEEETT
T ss_pred             EEEeecccCCCcccCCEEE--CC-EEEEEeCCCeEEEEECC
Confidence            4433321 11112222222  23 56677778888888753

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.65  E-value=1.7e-05  Score=65.36  Aligned_cols=206  Identities=9%  Similarity=-0.030  Sum_probs=117.8

Q ss_pred             ceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecC
Q 019059          110 LERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE  189 (346)
Q Consensus       110 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  189 (346)
                      .+.+..+... .....++|+++++ ++++...++.|..||.+..  ......  .   .....++++.++++.+++....
T Consensus        22 ~~~~~~~p~~-~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g~--~~~~~~--~---~~~p~gia~~~dG~l~vad~~~   92 (306)
T 2p4o_A           22 AKIITSFPVN-TFLENLASAPDGT-IFVTNHEVGEIVSITPDGN--QQIHAT--V---EGKVSGLAFTSNGDLVATGWNA   92 (306)
T ss_dssp             EEEEEEECTT-CCEEEEEECTTSC-EEEEETTTTEEEEECTTCC--EEEEEE--C---SSEEEEEEECTTSCEEEEEECT
T ss_pred             ceEeEeCCCC-CCcceEEECCCCC-EEEEeCCCCeEEEECCCCc--eEEEEe--C---CCCceeEEEcCCCcEEEEeccC
Confidence            3444555332 4577899999887 4555456889999987642  112111  1   1267899999999855544332


Q ss_pred             --CeEEEEEccCCCccceeec--cc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceee---------ecCCCcce
Q 019059          190 --SSVQFWDLRSMGKTNSIEH--AH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQE---------LPGHTHWT  255 (346)
Q Consensus       190 --~~i~i~d~~~~~~~~~~~~--~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---------~~~~~~~v  255 (346)
                        ..|..+|..+++.......  .. ...++..+.+. ++++-..++.|..+|.......+..         ....-...
T Consensus        93 ~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~-~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~p  171 (306)
T 2p4o_A           93 DSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAA  171 (306)
T ss_dssp             TSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSE-EEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSE
T ss_pred             CcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCc-EEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcC
Confidence              2477778777764332221  12 45555555554 5666556789999987642111110         00111234


Q ss_pred             EEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeec
Q 019059          256 WAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSY  335 (346)
Q Consensus       256 ~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  335 (346)
                      +.+  +|++..++++-...+.|..+++... ....            ..+....+    .....++++++|. ++++...
T Consensus       172 ngi--s~dg~~lyv~d~~~~~I~~~~~~~~-g~~~------------~~~~~~~~----~~P~gi~vd~dG~-l~va~~~  231 (306)
T 2p4o_A          172 NGL--KRFGNFLYVSNTEKMLLLRIPVDST-DKPG------------EPEIFVEQ----TNIDDFAFDVEGN-LYGATHI  231 (306)
T ss_dssp             EEE--EEETTEEEEEETTTTEEEEEEBCTT-SCBC------------CCEEEEES----CCCSSEEEBTTCC-EEEECBT
T ss_pred             CCc--CcCCCEEEEEeCCCCEEEEEEeCCC-CCCC------------ccEEEecc----CCCCCeEECCCCC-EEEEeCC
Confidence            555  7887345555666789999998740 0000            00111111    2356788888886 7777666


Q ss_pred             CCeEEEeeec
Q 019059          336 DGRVRNHMLE  345 (346)
Q Consensus       336 d~~v~vw~~~  345 (346)
                      .+.|.+++.+
T Consensus       232 ~~~V~~~~~~  241 (306)
T 2p4o_A          232 YNSVVRIAPD  241 (306)
T ss_dssp             TCCEEEECTT
T ss_pred             CCeEEEECCC
Confidence            7778887754

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.64  E-value=9.3e-05  Score=69.57  Aligned_cols=234  Identities=11%  Similarity=0.058  Sum_probs=140.2

Q ss_pred             ccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeee-------ccCCceEEEEeecCCCCcEE
Q 019059           65 PNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD-------AHVGKINCVLWWSSGRHDKL  137 (346)
Q Consensus        65 ~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~~~  137 (346)
                      ...|.++...+++...+.+     .++.+.+|+..         ..+......       .....|.++...++|.  +.
T Consensus       214 ~~~i~~i~~d~~g~lwigt-----~~~Gl~~~~~~---------~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~--lW  277 (795)
T 4a2l_A          214 TKQIQAILQQSPTRIWVAT-----EGAGLFLINPK---------TKEIKNYLHSPSNPKSISSNYIRSLAMDSQNR--LW  277 (795)
T ss_dssp             CCCEEEEEEEETTEEEEEE-----BSSCEEEEETT---------TTEEEEECCCTTCTTSCSCSBEEEEEECTTSC--EE
T ss_pred             CCeeEEEEEcCCCCEEEEE-----CCCCeEEEeCC---------CCeEEEeecCCCCccccCCCeEEEEEEcCCCC--EE
Confidence            4567888777766655543     33357788865         222111111       1235699999888887  55


Q ss_pred             EEecCCeEEEEEcCCCCCCceeeec---ccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceee-------
Q 019059          138 VSIDEENIFLWSLDCSNKNAQVQSK---QSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE-------  207 (346)
Q Consensus       138 ~~~~d~~i~vwd~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-------  207 (346)
                      ++..+ -|.+||..+.. ...+...   ...-....|.++...+++. +.+++.++.|..++..+........       
T Consensus       278 igt~~-Gl~~~~~~~~~-~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l  354 (795)
T 4a2l_A          278 IGTFN-DLNIYHEGTDS-FASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSL  354 (795)
T ss_dssp             EEESS-CEEEEETTTTE-EEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSC
T ss_pred             EEeCC-hhheEcCCCCe-EEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCC
Confidence            55444 68888876542 1111110   0111234789999988776 5666677778899876554211110       


Q ss_pred             ccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeec---------CCCcceEEEEeCCCCCcEEEEecCCCeE
Q 019059          208 HAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP---------GHTHWTWAVCCNPEYDGFILSAGTDSTV  277 (346)
Q Consensus       208 ~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------~~~~~v~~v~~~~~~~~~l~s~~~d~~i  277 (346)
                      ... |.++...+++.  +..|+.++-|..||..+ . ....+.         .....|.++...+++ .+|..|+.++-|
T Consensus       355 ~~~~V~~i~~d~~g~--lWiGt~~~Gl~~~~~~~-~-~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~~lWigt~~~Gl  429 (795)
T 4a2l_A          355 SDNVVSCIVEDKDKN--LWIGTNDGGLNLYNPIT-Q-RFTSYTLQEDESARGIGSNNIKAVYVDEKK-SLVYIGTHAGGL  429 (795)
T ss_dssp             SCSSEEEEEECTTSC--EEEEESSSCEEEECTTT-C-CEEEECCC------CCSCSCEEEEEEETTT-TEEEEEETTTEE
T ss_pred             CCCeeEEEEECCCCC--EEEEECCCCeEEEcCCC-C-cEEEEecCCCCcccCCCCccEEEEEEcCCC-CEEEEEeCcCce
Confidence            112 99999999886  45567777788998765 2 232222         123568899888888 646667777779


Q ss_pred             EEEecCCCCCCCCCcccccCCccccccccccccc----cccceeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059          278 NLWLVSTSNHDELPSESLVESPNQRANSLLNSYS----DYEDSVYGLAWSSREPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       278 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~  344 (346)
                      .+||..+                   ++......    .....|.++...+++. +.+.. .+| +.+|+.
T Consensus       430 ~~~d~~~-------------------~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lwigt-~~G-l~~~~~  478 (795)
T 4a2l_A          430 SILHRNS-------------------GQVENFNQRNSQLVNENVYAILPDGEGN-LWLGT-LSA-LVRFNP  478 (795)
T ss_dssp             EEEETTT-------------------CCEEEECTTTSCCSCSCEEEEEECSSSC-EEEEE-SSC-EEEEET
T ss_pred             eEEeCCC-------------------CcEEEeecCCCCcCCCeeEEEEECCCCC-EEEEe-cCc-eeEEeC
Confidence            9999876                   22111100    1234688999888886 44443 344 666664

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.64  E-value=5.9e-05  Score=62.44  Aligned_cols=222  Identities=10%  Similarity=-0.032  Sum_probs=134.3

Q ss_pred             CeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCC
Q 019059           42 NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVG  121 (346)
Q Consensus        42 ~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~  121 (346)
                      +.|..+++.......  .........+.+++|.+.++.|..+   ....+.|..+++..        .......+...-.
T Consensus        13 ~~I~~i~l~~~~~~~--~~~~~~~~~~~~ld~d~~~~~lyw~---D~~~~~I~r~~~~g--------~~~~~~~~~~~l~   79 (318)
T 3sov_A           13 RDLRLVDATNGKENA--TIVVGGLEDAAAVDFVFSHGLIYWS---DVSEEAIKRTEFNK--------TESVQNVVVSGLL   79 (318)
T ss_dssp             EEEEEEETTCTTSCC--EEEEEEEEEEEEEEEEGGGTEEEEE---ETTTTEEEEEETTS--------SSCCCEEEEECCS
T ss_pred             CeEEEEECCCCceEE--EEEecCCCccEEEEEEeCCCEEEEE---ECCCCcEEEEEccC--------CCceEEEEcCCCC
Confidence            456666665542111  1111222456789999977777765   35567888888762        1111111222223


Q ss_pred             ceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec--CCeEEEEEccC
Q 019059          122 KINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC--ESSVQFWDLRS  199 (346)
Q Consensus       122 ~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~i~d~~~  199 (346)
                      ....+++.+.+..++++-...+.|.+++++... ...+...    ......++++.|.+..|+.+..  .+.|...++..
T Consensus        80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-~~~l~~~----~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG  154 (318)
T 3sov_A           80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-RKVLFWQ----ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG  154 (318)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECS----SCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS
T ss_pred             CccEEEEEcCCCeEEEEECCCCEEEEEECCCCc-EEEEEeC----CCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC
Confidence            466788887666555555667899999987432 2222211    1225688999987777777653  57888888874


Q ss_pred             CCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCe
Q 019059          200 MGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDST  276 (346)
Q Consensus       200 ~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~  276 (346)
                      ... ..+....   .+.|+++|++..++++-...+.|..+|+.. ................+++.. + .++.+-...+.
T Consensus       155 ~~~-~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG-~~~~~~~~~~~~~P~glav~~-~-~lywtd~~~~~  230 (318)
T 3sov_A          155 SSR-FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG-TNRQAVVKGSLPHPFALTLFE-D-ILYWTDWSTHS  230 (318)
T ss_dssp             CSC-EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEECSCCSCEEEEEEET-T-EEEEEETTTTE
T ss_pred             CCe-EEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC-CceEEEecCCCCCceEEEEeC-C-EEEEEecCCCe
Confidence            332 2332122   899999997775777767778999999874 222222222334456677753 3 56666666788


Q ss_pred             EEEEecCCC
Q 019059          277 VNLWLVSTS  285 (346)
Q Consensus       277 i~iwd~~~~  285 (346)
                      |..++..++
T Consensus       231 V~~~~~~~G  239 (318)
T 3sov_A          231 ILACNKYTG  239 (318)
T ss_dssp             EEEEETTTC
T ss_pred             EEEEECCCC
Confidence            999988654

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.64  E-value=4.5e-05  Score=65.43  Aligned_cols=181  Identities=11%  Similarity=0.018  Sum_probs=112.0

Q ss_pred             CcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCC--CCceeeecccCC
Q 019059           89 ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSN--KNAQVQSKQSSG  166 (346)
Q Consensus        89 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~--~~~~~~~~~~~~  166 (346)
                      ....|+..+++         ..... .+......+..++|++.+..++.+-...+.|+.+++....  .........   
T Consensus        90 ~~~~I~~i~l~---------~~~~~-~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~---  156 (400)
T 3p5b_L           90 NRHEVRKMTLD---------RSEYT-SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR---  156 (400)
T ss_dssp             ETTEEEEECTT---------SCSCE-EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECS---
T ss_pred             ccceeEEEccC---------Cccee-EeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeC---
Confidence            44578888876         22222 2223456788999998777655555667899999987532  111112111   


Q ss_pred             CceeeEEEEeCCCCCcEEEEe-cCCeEEEEEccCCCccceeecc-c-eeEEEeCCCCCcEEEEecC-CCeEEEEEcccCC
Q 019059          167 MLHYLSGGAWDPHDVNAVAAT-CESSVQFWDLRSMGKTNSIEHA-H-VRNVDYDTKKKHLLVTAAD-ESGIHLWDLRMLK  242 (346)
Q Consensus       167 ~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~-~-v~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~  242 (346)
                      ......++++.+.+..|+.+. ..+.|.+.++........+... . ...|+++|.+..++++-.. .+.|...++.- .
T Consensus       157 ~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG-~  235 (400)
T 3p5b_L          157 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-V  235 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTS-C
T ss_pred             CCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCC-C
Confidence            122567888887666666654 5788999998865443333322 2 8999999977645555433 47888888874 2


Q ss_pred             cceeee-cCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          243 APIQEL-PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       243 ~~~~~~-~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                       ....+ ...-...+.|++++++..+.++-...+.|..+|+..
T Consensus       236 -~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG  277 (400)
T 3p5b_L          236 -DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  277 (400)
T ss_dssp             -SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             -ccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCC
Confidence             22333 333356789999988734445545577899999874

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.62  E-value=6.6e-06  Score=68.46  Aligned_cols=198  Identities=9%  Similarity=0.042  Sum_probs=115.0

Q ss_pred             ceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccC---------------CCceeeEEEEeCCCCCcEEEE
Q 019059          122 KINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSS---------------GMLHYLSGGAWDPHDVNAVAA  186 (346)
Q Consensus       122 ~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~l~~~  186 (346)
                      ...+++|.+++. +++++..++.|..|+..++. ...+......               .......++++.+++..|+++
T Consensus        20 ~p~~i~~d~~g~-~l~v~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~   97 (322)
T 2fp8_A           20 APNSFTFDSTNK-GFYTSVQDGRVIKYEGPNSG-FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV   97 (322)
T ss_dssp             CCCCEECCTTCS-SEEEECTTSEEEEECCTTTC-EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE
T ss_pred             CceEEEEcCCCC-EEEEEcCCCeEEEECCCCCc-eEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE
Confidence            456788999877 46666678899999876543 1111110000               001246889999744456666


Q ss_pred             ecCCeEEEEEccCCCccc--eeecc---c-eeEEEeCC-CCCcEEEEecC-----------------CCeEEEEEcccCC
Q 019059          187 TCESSVQFWDLRSMGKTN--SIEHA---H-VRNVDYDT-KKKHLLVTAAD-----------------ESGIHLWDLRMLK  242 (346)
Q Consensus       187 ~~d~~i~i~d~~~~~~~~--~~~~~---~-v~~~~~~~-~~~~~l~~~~~-----------------dg~i~i~d~~~~~  242 (346)
                      ...+.|..+|..+++...  ....+   . +..+++.+ +|. ++++...                 ++.|..+|... .
T Consensus        98 d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~-~  175 (322)
T 2fp8_A           98 DCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST-K  175 (322)
T ss_dssp             ETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT-T
T ss_pred             ECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCCC-C
Confidence            555568888877553211  11111   1 78999999 887 6665432                 36788888754 2


Q ss_pred             cceeeecCCCcceEEEEeCCCCCcEE-EEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEE
Q 019059          243 APIQELPGHTHWTWAVCCNPEYDGFI-LSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLA  321 (346)
Q Consensus       243 ~~~~~~~~~~~~v~~v~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  321 (346)
                      . +..+.........++++|++ ..| ++-..++.|.+|++......              ..+....+   .+ ...++
T Consensus       176 ~-~~~~~~~~~~p~gia~~~dg-~~lyv~d~~~~~I~~~~~~~~~~~--------------~~~~~~~~---~g-P~gi~  235 (322)
T 2fp8_A          176 E-TTLLLKELHVPGGAEVSADS-SFVLVAEFLSHQIVKYWLEGPKKG--------------TAEVLVKI---PN-PGNIK  235 (322)
T ss_dssp             E-EEEEEEEESCCCEEEECTTS-SEEEEEEGGGTEEEEEESSSTTTT--------------CEEEEEEC---SS-EEEEE
T ss_pred             E-EEEeccCCccCcceEECCCC-CEEEEEeCCCCeEEEEECCCCcCC--------------ccceEEeC---CC-CCCeE
Confidence            2 22222122345679999999 644 44466789999998741000              01111111   12 67788


Q ss_pred             eCCCCCcEEEEeec----------CCeEEEeee
Q 019059          322 WSSREPWIFASLSY----------DGRVRNHML  344 (346)
Q Consensus       322 ~~~~~~~~l~s~~~----------d~~v~vw~~  344 (346)
                      ++++|. +.++...          .+.|..++.
T Consensus       236 ~d~~G~-l~va~~~~~~~~~~~~~~~~v~~~d~  267 (322)
T 2fp8_A          236 RNADGH-FWVSSSEELDGNMHGRVDPKGIKFDE  267 (322)
T ss_dssp             ECTTSC-EEEEEEEETTSSTTSCEEEEEEEECT
T ss_pred             ECCCCC-EEEEecCcccccccCCCccEEEEECC
Confidence            999886 5555543          355666654

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=98.58  E-value=0.00021  Score=60.26  Aligned_cols=271  Identities=11%  Similarity=0.135  Sum_probs=165.2

Q ss_pred             CcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCC
Q 019059           27 DHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLN  106 (346)
Q Consensus        27 ~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~  106 (346)
                      ++.++++-.-..+..+++.++++...+....  .    +-.--+.-.+|..+.++.-     ...+++|+|++       
T Consensus        33 ESDkyicVrE~~~~~~~vvIiDl~~~~~~~r--r----pi~AdsAIMnP~~~iiALr-----ag~~lQiFnle-------   94 (494)
T 1bpo_A           33 ESDKFICIREKVGEQAQVVIIDMNDPSNPIR--R----PISADSAIMNPASKVIALK-----AGKTLQIFNIE-------   94 (494)
T ss_dssp             EETTEEEEEECCTTCCEEEEEETTSTTSCEE--E----ECCCSEEEECSSSSCEEEE-----ETTEEEEEETT-------
T ss_pred             ecCceEEEEecCCCCCeEEEEECCCCCccee--c----ccccceeeeCCCCcEEEEe-----cCCeEEEEchH-------
Confidence            3455666555556667888998888655422  1    1122244578877655543     35699999998       


Q ss_pred             CccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEE
Q 019059          107 SPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAA  186 (346)
Q Consensus       107 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  186 (346)
                        ....+..+.- .+.|.--.|-.+.. +.+++  +..|+-|+++....+.+.......-....|..-..+++.++++..
T Consensus        95 --~K~klks~~~-~e~VvfWkWis~~~-l~lVT--~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~  168 (494)
T 1bpo_A           95 --MKSKMKAHTM-TDDVTFWKWISLNT-VALVT--DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLT  168 (494)
T ss_dssp             --TTEEEEEEEC-SSCCCEEEEEETTE-EEEEC--SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEE
T ss_pred             --Hhhhhcceec-CCCceEEEecCCCe-EEEEc--CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEE
Confidence              4555555533 45688888987765 34443  689999999875556555554432224577778889999987765


Q ss_pred             ec-------CCeEEEEEccCCCccceeeccc-eeEEEeCCCC----CcEEEEecC---CCeEEEEEcccC--Ccc-----
Q 019059          187 TC-------ESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKK----KHLLVTAAD---ESGIHLWDLRML--KAP-----  244 (346)
Q Consensus       187 ~~-------d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~----~~~l~~~~~---dg~i~i~d~~~~--~~~-----  244 (346)
                      +-       .|.+.+|..+.+.  ...-.+| ..-..+-.+|    ..+++.+..   .+.+++.++...  +.+     
T Consensus       169 GI~~~~~~v~G~mQLYS~er~~--sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk  246 (494)
T 1bpo_A          169 GISAQQNRVVGAMQLYSVDRKV--SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKK  246 (494)
T ss_dssp             EEEEETTEEEEEEEEEESTTCC--EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCE
T ss_pred             eecccCCcccceEEEeeccccc--cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccce
Confidence            41       3678888877543  2333466 2222222222    124444433   278999998643  111     


Q ss_pred             -eeeecC---CCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEE
Q 019059          245 -IQELPG---HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGL  320 (346)
Q Consensus       245 -~~~~~~---~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  320 (346)
                       +..+..   ...-..++..++.. ..++..+.-|.|++||+.+                   +.+++.-.-....|..-
T Consensus       247 ~vdv~fppe~~~DFPvamqvs~ky-gviyviTK~G~i~lyDleT-------------------gt~i~~nrIs~~~iF~t  306 (494)
T 1bpo_A          247 AVDVFFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLET-------------------GTCIYMNRISGETIFVT  306 (494)
T ss_dssp             EEECCCCTTSTTCCEEEEEEETTT-TEEEEEETTSEEEEEETTT-------------------CCEEEEEECCSSCEEEE
T ss_pred             eeeeeCCcccccCceeEEEecccC-CEEEEEecCceEEEEeccc-------------------ceeeeeecccCCceEEe
Confidence             111111   12334567778877 7888889999999999999                   88887766656666555


Q ss_pred             EeCCCCCcEEEEeecCCeEEEeee
Q 019059          321 AWSSREPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       321 ~~~~~~~~~l~s~~~d~~v~vw~~  344 (346)
                      +-+..... ++.....|.|.--.+
T Consensus       307 ~~~~~~~G-i~~Vnr~GqVl~v~v  329 (494)
T 1bpo_A          307 APHEATAG-IIGVNRKGQVLSVCV  329 (494)
T ss_dssp             EEETTTTE-EEEEETTCEEEEEEE
T ss_pred             cccCCCCc-EEEEccCceEEEEEE
Confidence            54444332 344456676654443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.55  E-value=0.00059  Score=64.17  Aligned_cols=231  Identities=11%  Similarity=0.036  Sum_probs=141.9

Q ss_pred             cceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeee--------ccCCceEEEEeecCCCCcEE
Q 019059           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD--------AHVGKINCVLWWSSGRHDKL  137 (346)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~~~~  137 (346)
                      ..|.++...+++...+.+     .. .|.+|+..         .... ..+.        .....|.++...++|.  +-
T Consensus       263 ~~i~~i~~d~~g~lWigt-----~~-Gl~~~~~~---------~~~~-~~~~~~~~~~~~l~~~~i~~i~~D~~g~--lW  324 (795)
T 4a2l_A          263 NYIRSLAMDSQNRLWIGT-----FN-DLNIYHEG---------TDSF-ASYSSNPVENGSLSQRSVRSIFMDSQGG--MW  324 (795)
T ss_dssp             SBEEEEEECTTSCEEEEE-----SS-CEEEEETT---------TTEE-EEECCCTTSTTSCSSSCEEEEEECTTSC--EE
T ss_pred             CeEEEEEEcCCCCEEEEe-----CC-hhheEcCC---------CCeE-EEEecCCCCCCCCCCCcEEEEEEeCCcC--EE
Confidence            568899888877665553     33 57888865         2221 1111        1235799999988887  66


Q ss_pred             EEecCCeEEEEEcCCCCCCceeeecc--cCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceee--------
Q 019059          138 VSIDEENIFLWSLDCSNKNAQVQSKQ--SSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE--------  207 (346)
Q Consensus       138 ~~~~d~~i~vwd~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--------  207 (346)
                      +++.++-|..++..+... .......  ..-....|.++...+++. |.+|+.++-|..||..+++......        
T Consensus       325 igt~~~Gl~~~~~~~~~~-~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~  402 (795)
T 4a2l_A          325 LGTYFGGLNYYHPIRNRF-KNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARG  402 (795)
T ss_dssp             EEESSSCEEEECGGGGSS-EEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------C
T ss_pred             EEECCCCeEEeCCCcccc-eEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccC
Confidence            666678888888764321 1111110  111234688888887765 6667777779999988765322111        


Q ss_pred             -ccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeec-----CCCcceEEEEeCCCCCcEEEEecCCCeEEEE
Q 019059          208 -HAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP-----GHTHWTWAVCCNPEYDGFILSAGTDSTVNLW  280 (346)
Q Consensus       208 -~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iw  280 (346)
                       ... |.++...+++. +|..|+.++-+.++|.++ + ....+.     .....|.++...++| .+.+. +.+| |.+|
T Consensus       403 l~~~~v~~i~~d~~g~-~lWigt~~~Gl~~~d~~~-~-~~~~~~~~~~~l~~~~v~~i~~d~~g-~lwig-t~~G-l~~~  476 (795)
T 4a2l_A          403 IGSNNIKAVYVDEKKS-LVYIGTHAGGLSILHRNS-G-QVENFNQRNSQLVNENVYAILPDGEG-NLWLG-TLSA-LVRF  476 (795)
T ss_dssp             CSCSCEEEEEEETTTT-EEEEEETTTEEEEEETTT-C-CEEEECTTTSCCSCSCEEEEEECSSS-CEEEE-ESSC-EEEE
T ss_pred             CCCccEEEEEEcCCCC-EEEEEeCcCceeEEeCCC-C-cEEEeecCCCCcCCCeeEEEEECCCC-CEEEE-ecCc-eeEE
Confidence             012 89999888885 466777777899999875 3 233332     134578999988888 54443 3444 8889


Q ss_pred             ecCCCCCCCCCcccccCCcccccccccccc------ccccceeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059          281 LVSTSNHDELPSESLVESPNQRANSLLNSY------SDYEDSVYGLAWSSREPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       281 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~  344 (346)
                      |..+                   ++.....      .-....|.++...+++. +.+... . -+..|+.
T Consensus       477 ~~~~-------------------~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigt~-~-Gl~~~~~  524 (795)
T 4a2l_A          477 NPEQ-------------------RSFTTIEKEKDGTPVVSKQITTLFRDSHKR-LWIGGE-E-GLSVFKQ  524 (795)
T ss_dssp             ETTT-------------------TEEEECCBCTTCCBCCCCCEEEEEECTTCC-EEEEES-S-CEEEEEE
T ss_pred             eCCC-------------------CeEEEccccccccccCCceEEEEEECCCCC-EEEEeC-C-ceEEEeC
Confidence            8876                   2211110      11234688999999886 544433 3 4666664

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.54  E-value=1.1e-05  Score=74.03  Aligned_cols=229  Identities=11%  Similarity=-0.020  Sum_probs=118.2

Q ss_pred             eEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEe-cC----
Q 019059           68 IWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI-DE----  142 (346)
Q Consensus        68 v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~d----  142 (346)
                      ..++++.++++.++++   |..+..+.+||...       .....+..+.... .-.+++..++++ +++.++ .+    
T Consensus       245 ~~~~~~~~~g~lyv~G---G~~~~~v~~yd~~t-------~~W~~~~~~~~~R-~~~s~~~~~dg~-iyv~GG~~~~~~~  312 (656)
T 1k3i_A          245 CPGISMDGNGQIVVTG---GNDAKKTSLYDSSS-------DSWIPGPDMQVAR-GYQSSATMSDGR-VFTIGGSWSGGVF  312 (656)
T ss_dssp             SCEEEECTTSCEEEEC---SSSTTCEEEEEGGG-------TEEEECCCCSSCC-SSCEEEECTTSC-EEEECCCCCSSSC
T ss_pred             cccccCCCCCCEEEeC---CCCCCceEEecCcC-------CceeECCCCCccc-cccceEEecCCe-EEEEeCcccCCcc
Confidence            3346777777666663   23456899999872       2333333332222 223455566777 566666 33    


Q ss_pred             -CeEEEEEcCCCCCCceeee----cccCCCceeeEEEEeCCCCCcEEEEecC---------CeEEEEEccCCCccceee-
Q 019059          143 -ENIFLWSLDCSNKNAQVQS----KQSSGMLHYLSGGAWDPHDVNAVAATCE---------SSVQFWDLRSMGKTNSIE-  207 (346)
Q Consensus       143 -~~i~vwd~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~-  207 (346)
                       ..+.+||..+..  .....    .....   .-....+..++..++.++.+         ..+..||..+........ 
T Consensus       313 ~~~~e~yd~~t~~--W~~~~~~~~~p~~~---~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~  387 (656)
T 1k3i_A          313 EKNGEVYSPSSKT--WTSLPNAKVNPMLT---ADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGK  387 (656)
T ss_dssp             CCCEEEEETTTTE--EEEETTSCSGGGCC---CCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEE
T ss_pred             cccceEeCCCCCc--ceeCCCcccccccc---ccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCc
Confidence             578999987643  22211    00000   00011233455555566544         356788888765322111 


Q ss_pred             --c-------cc-eeEEEeCC-CCCcEEEEecCCC-----------eEEEEEcccCCcceeeec---CCCcc-eEEEEeC
Q 019059          208 --H-------AH-VRNVDYDT-KKKHLLVTAADES-----------GIHLWDLRMLKAPIQELP---GHTHW-TWAVCCN  261 (346)
Q Consensus       208 --~-------~~-v~~~~~~~-~~~~~l~~~~~dg-----------~i~i~d~~~~~~~~~~~~---~~~~~-v~~v~~~  261 (346)
                        .       .. -.++.|.. ++. +++.|+.++           .+.+||..+..  ...+.   .+... -.+....
T Consensus       388 ~~~~~~~~~~~~~~~av~~~~~~~~-i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~mp~~R~~~~~~~l  464 (656)
T 1k3i_A          388 RQSNRGVAPDAMCGNAVMYDAVKGK-ILTFGGSPDYQDSDATTNAHIITLGEPGTSP--NTVFASNGLYFARTFHTSVVL  464 (656)
T ss_dssp             CEETTEECCCCBTCEEEEEETTTTE-EEEECCBSSSSSSBCCCCEEEEECCSTTSCC--EEEECTTCCSSCCBSCEEEEC
T ss_pred             cccccccCCCCCCCceEeccCCCCe-EEEEeCCCCCCCCCcCCcceEEEcCCCCCCC--eeEEccCCCCCCcccCCeEEC
Confidence              0       01 33444443 454 788887432           57788876422  22221   11122 2344566


Q ss_pred             CCCCcEEEEecCC-----------CeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEE
Q 019059          262 PEYDGFILSAGTD-----------STVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIF  330 (346)
Q Consensus       262 ~~~~~~l~s~~~d-----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  330 (346)
                      |++ ++++.|+.+           ..+.+||..+.                 ....+..+...........+.|+++ ++
T Consensus       465 ~~g-~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~-----------------~W~~~~~~~~~R~~hs~a~ll~dg~-v~  525 (656)
T 1k3i_A          465 PDG-STFITGGQRRGIPFEDSTPVFTPEIYVPEQD-----------------TFYKQNPNSIVRVYHSISLLLPDGR-VF  525 (656)
T ss_dssp             TTS-CEEEECCBSBCCTTCCCSBCCCCEEEEGGGT-----------------EEEECCCCSSCCCTTEEEEECTTSC-EE
T ss_pred             CCC-CEEEECCcccCcCcCCCCcccceEEEcCCCC-----------------ceeecCCCCCccccccHhhcCCCcE-EE
Confidence            888 888888864           46889998761                 1122222222222123345678887 88


Q ss_pred             EEeec
Q 019059          331 ASLSY  335 (346)
Q Consensus       331 ~s~~~  335 (346)
                      +.|+.
T Consensus       526 v~GG~  530 (656)
T 1k3i_A          526 NGGGG  530 (656)
T ss_dssp             EEECC
T ss_pred             ecCCC
Confidence            88874

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.49  E-value=0.00032  Score=58.96  Aligned_cols=240  Identities=9%  Similarity=0.036  Sum_probs=124.2

Q ss_pred             cceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeee---ccCCceEEEEeecC---CCCcEEEE
Q 019059           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD---AHVGKINCVLWWSS---GRHDKLVS  139 (346)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~---~~~~~~~~  139 (346)
                      .....++|.|+++.+++-     ..+.|.+++ ..        ....+..+.   ........++|+|+   +..++++.
T Consensus        31 ~~P~~ia~~pdG~l~V~e-----~~g~I~~i~-~g--------~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~   96 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIAE-----RPGRIRLFR-EG--------RLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYR   96 (352)
T ss_dssp             SCEEEEEECTTSCEEEEE-----TTTEEEEEE-TT--------EEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEE
T ss_pred             CCceEEEEcCCCeEEEEe-----CCCeEEEEE-CC--------CccEeecceEeecCCCCceeEEECCCCCCCCEEEEEE
Confidence            456789999999755442     457888887 31        222222221   22456789999998   55444444


Q ss_pred             ecC-----CeEEEEEcCCCCC--Cceeeeccc--CCCceeeEEEEeCCCCCcEEEEec-------------CCeEEEEEc
Q 019059          140 IDE-----ENIFLWSLDCSNK--NAQVQSKQS--SGMLHYLSGGAWDPHDVNAVAATC-------------ESSVQFWDL  197 (346)
Q Consensus       140 ~~d-----~~i~vwd~~~~~~--~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~-------------d~~i~i~d~  197 (346)
                      ...     +.|..++......  ...+.....  .........++|.|++...++.+.             .+.|.-+|.
T Consensus        97 ~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~  176 (352)
T 2ism_A           97 TVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTP  176 (352)
T ss_dssp             EECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECT
T ss_pred             ecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcC
Confidence            433     6788888764311  111111111  111224468999999965554332             156766666


Q ss_pred             cCC------------Cccceeeccc--eeEEEeCC-CCCcEEEEecCCCe--------EEEEEccc--------------
Q 019059          198 RSM------------GKTNSIEHAH--VRNVDYDT-KKKHLLVTAADESG--------IHLWDLRM--------------  240 (346)
Q Consensus       198 ~~~------------~~~~~~~~~~--v~~~~~~~-~~~~~l~~~~~dg~--------i~i~d~~~--------------  240 (346)
                      ...            .....+..++  ...++|+| ++. ++++-.....        |.+...-.              
T Consensus       177 dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~-l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~  255 (352)
T 2ism_A          177 EGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGE-LFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDP  255 (352)
T ss_dssp             TSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCC-EEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCT
T ss_pred             CCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCC-EEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCC
Confidence            531            1222333344  88999999 565 5555333222        33322110              


Q ss_pred             -CCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeE
Q 019059          241 -LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYG  319 (346)
Q Consensus       241 -~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  319 (346)
                       ...++..+. +......++| .+| .++++.-..+.|...++.......           + ..+. ..+......+.+
T Consensus       256 ~~~~p~~~~~-~~~ap~G~~~-~~G-~l~v~~~~~~~v~~v~~~~~~~~~-----------~-~~~~-~~~~~~~~rp~~  319 (352)
T 2ism_A          256 RYRDPLYFWP-QGFPPGNLAF-FRG-DLYVAGLRGQALLRLVLEGERGRW-----------R-VLRV-ETALSGFGRLRE  319 (352)
T ss_dssp             TSCCCSEECT-TCCCEEEEEE-ETT-EEEEEETTTTEEEEEEEEEETTEE-----------E-EEEE-EEEEESSCCEEE
T ss_pred             CCcCCeEecC-CCCCCcceEE-ECC-EEEEEECCCCEEEEEEECCCCcce-----------e-ecch-heecccCCCeeE
Confidence             011333332 2234566777 456 666666666777777766410000           0 0000 111111245899


Q ss_pred             EEeCCCCCcEEEEe-ecCC
Q 019059          320 LAWSSREPWIFASL-SYDG  337 (346)
Q Consensus       320 ~~~~~~~~~~l~s~-~~d~  337 (346)
                      +++.|+|. ++++. ..+|
T Consensus       320 v~~~pdG~-lyv~~~~~~g  337 (352)
T 2ism_A          320 VQVGPDGA-LYVTTSNRDG  337 (352)
T ss_dssp             EEECTTSC-EEEEECSTTT
T ss_pred             EEECCCCc-EEEEEeCCCC
Confidence            99999997 55554 3344

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.46  E-value=0.00018  Score=66.89  Aligned_cols=181  Identities=11%  Similarity=0.019  Sum_probs=110.1

Q ss_pred             CcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCC--CceeeecccCC
Q 019059           89 ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNK--NAQVQSKQSSG  166 (346)
Q Consensus        89 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~~  166 (346)
                      ....|+..++.         .... ..+......+..++|.+.+..++++-...+.|+.+++.....  ........   
T Consensus       402 n~~~Ir~i~l~---------~~~~-~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~---  468 (791)
T 3m0c_C          402 NRHEVRKMTLD---------RSEY-TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR---  468 (791)
T ss_dssp             CBSSEEEECTT---------SCCC-EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS---
T ss_pred             cccceeEeecc---------CCcc-eeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEec---
Confidence            44466776665         2222 222234456789999987765555656678899999875321  11111111   


Q ss_pred             CceeeEEEEeCCCCCcEEEEe-cCCeEEEEEccCCCccceeecc-c-eeEEEeCCCCCcEEEEecCC-CeEEEEEcccCC
Q 019059          167 MLHYLSGGAWDPHDVNAVAAT-CESSVQFWDLRSMGKTNSIEHA-H-VRNVDYDTKKKHLLVTAADE-SGIHLWDLRMLK  242 (346)
Q Consensus       167 ~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~-~-v~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~  242 (346)
                      ......+|++.+.+..|+.+. ..+.|.+.++........+... . ...|+++|.+.+++++-... +.|...++.- .
T Consensus       469 ~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG-~  547 (791)
T 3m0c_C          469 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-V  547 (791)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-C
T ss_pred             CCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCC-C
Confidence            122567888888787777665 4789999998855433333212 1 89999999866466654333 6888888864 2


Q ss_pred             cceeee-cCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          243 APIQEL-PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       243 ~~~~~~-~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                       ....+ ...-...+.|++++.+..+.++-...+.|...++..
T Consensus       548 -~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG  589 (791)
T 3m0c_C          548 -DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  589 (791)
T ss_dssp             -CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             -ceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC
Confidence             23333 333357889999987734444545567899888864

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.46  E-value=1.7e-06  Score=79.70  Aligned_cols=203  Identities=7%  Similarity=-0.076  Sum_probs=118.8

Q ss_pred             ccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCe
Q 019059           65 PNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEEN  144 (346)
Q Consensus        65 ~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~  144 (346)
                      ...+.+++|.+.+..|+.+   ....+.|..+++.....     .......+...-.....+++.+.+..++++-...+.
T Consensus       405 ~~~p~gla~d~~~~~Ly~s---D~~~~~I~~~~~~g~~~-----~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~  476 (699)
T 1n7d_A          405 LRNVVALDTEVASNRIYWS---DLSQRMICSTQLDRAHG-----VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGT  476 (699)
T ss_dssp             CTTCCCCEEETTTTEEEEC---CTTTTSBEEEESCCCCC------CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSC
T ss_pred             CcceEEEccccccCeEEEE---ecCCCeEEEEecCCCCC-----CcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCe
Confidence            3456789999887777775   34557888888762000     011111111112234567887666655555456789


Q ss_pred             EEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec--CCeEEEEEccCCCccceeec-cc-eeEEEeCCCC
Q 019059          145 IFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC--ESSVQFWDLRSMGKTNSIEH-AH-VRNVDYDTKK  220 (346)
Q Consensus       145 i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~-~~-v~~~~~~~~~  220 (346)
                      |.++++.... ...+....    ......+++.|.+..|+.+..  .+.|.++++........+.. .. .+.|+|+|++
T Consensus       477 I~v~d~dg~~-~~~l~~~~----~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~  551 (699)
T 1n7d_A          477 VSVADTKGVK-RKTLFREQ----GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLS  551 (699)
T ss_dssp             EEEEBSSSCC-EEEECCCS----SCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTT
T ss_pred             EEEEecCCCc-eEEEEeCC----CCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccC
Confidence            9999987432 22221111    124678899997777766553  26788888764332221111 12 7899999987


Q ss_pred             CcEEEEecCCCeEEEEEcccCCcceeeecC---CCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          221 KHLLVTAADESGIHLWDLRMLKAPIQELPG---HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       221 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      ..++++-...+.|..+|+.. . ..+.+..   .......|++..+  .++++....+.|..++..+
T Consensus       552 ~~LY~aD~~~~~I~~~d~dG-~-~~~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~  614 (699)
T 1n7d_A          552 GRLYWVDSKLHSISSIDVNG-G-NRKTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLT  614 (699)
T ss_dssp             CCEEEEETTTTEEEEECSSS-S-CCEEECCCSSSCSSCCCCEEETT--EEEEECSTTTCEEEEETTT
T ss_pred             CEEEEEecCCCeEEEEccCC-C-ceEEEEecCCcCCCceEeEEECC--EEEEEeCCCCeEEEEEccC
Confidence            65777777778999999864 2 2222221   1122344555443  5566666678899998765

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.45  E-value=7.8e-05  Score=60.95  Aligned_cols=158  Identities=12%  Similarity=0.054  Sum_probs=103.0

Q ss_pred             ceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeeccc---CCCceeeEEEEe---CCCCCcEEEEec-------
Q 019059          122 KINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQS---SGMLHYLSGGAW---DPHDVNAVAATC-------  188 (346)
Q Consensus       122 ~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~---~~~~~~v~~~~~---~~~~~~l~~~~~-------  188 (346)
                      --.+++|.+....++++.-..+.|..|+...+.. ..+.....   ......+.++.|   .|+++.+++...       
T Consensus        14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~-~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~   92 (334)
T 2p9w_A           14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSH-FNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFA   92 (334)
T ss_dssp             CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCE-EEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTT
T ss_pred             CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeE-EEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccc
Confidence            3457889886664344444689999999874432 22211110   111235689999   688666665431       


Q ss_pred             ------CCeEEEEEcc---CCCccceeec-----c---------c-eeEEEeCCCCCcEEEEecCC-CeEEEEEcccCCc
Q 019059          189 ------ESSVQFWDLR---SMGKTNSIEH-----A---------H-VRNVDYDTKKKHLLVTAADE-SGIHLWDLRMLKA  243 (346)
Q Consensus       189 ------d~~i~i~d~~---~~~~~~~~~~-----~---------~-v~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~  243 (346)
                            +..|..+|+.   +++.+.....     +         . +..++..++|+ ..++++.- +.|...+..-  +
T Consensus        93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn-aYVt~s~~~~~I~rV~pdG--~  169 (334)
T 2p9w_A           93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN-SYVAFALGMPAIARVSADG--K  169 (334)
T ss_dssp             SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-EEEEEEESSCEEEEECTTS--C
T ss_pred             ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC-EEEeCCCCCCeEEEEeCCC--C
Confidence                  5779999999   7776644331     1         2 88999999998 88888777 7777776653  2


Q ss_pred             ceeeec------CCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          244 PIQELP------GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       244 ~~~~~~------~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      .+..+.      ......+.|+++|+| .+|++....+.|..+|+..
T Consensus       170 ~~~~~~~~~~~~~~~~G~nGIv~~pdg-~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          170 TVSTFAWESGNGGQRPGYSGITFDPHS-NKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             CEEEEEECCCCSSSCCSCSEEEEETTT-TEEEEESSSSSEEEEECSS
T ss_pred             EEeeeeecCCCcccccCcceEEEeCCC-CEEEEEcCCCeEEEEcCCC
Confidence            232221      112346799999999 6666665599999999885

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.43  E-value=4.2e-05  Score=70.25  Aligned_cols=155  Identities=6%  Similarity=0.017  Sum_probs=92.7

Q ss_pred             EEEeecCCCCcEEEEecCC-------------------eEEEEEcCCCCCCceeeecccCCC----ceeeEEEEeCCCCC
Q 019059          125 CVLWWSSGRHDKLVSIDEE-------------------NIFLWSLDCSNKNAQVQSKQSSGM----LHYLSGGAWDPHDV  181 (346)
Q Consensus       125 ~~~~~~~~~~~~~~~~~d~-------------------~i~vwd~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~  181 (346)
                      .+++.++... ++++..++                   .|..+|..+++.............    ..+.....+..+++
T Consensus       234 ~~a~d~~~~~-vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~  312 (668)
T 1kv9_A          234 SMAYDPELDL-LYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGK  312 (668)
T ss_dssp             CEEEETTTTE-EEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred             ceEEcCCCCE-EEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCc
Confidence            4677777663 55554343                   499999998887666554321110    01222122222454


Q ss_pred             ---cEEEEecCCeEEEEEccCCCccceeeccc--------------------------------------eeEEEeCCCC
Q 019059          182 ---NAVAATCESSVQFWDLRSMGKTNSIEHAH--------------------------------------VRNVDYDTKK  220 (346)
Q Consensus       182 ---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--------------------------------------v~~~~~~~~~  220 (346)
                         .++.++.+|.++++|..+++.+.......                                      -..++++|+.
T Consensus       313 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~  392 (668)
T 1kv9_A          313 PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT  392 (668)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred             EEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCC
Confidence               57777889999999999998763221100                                      1125677776


Q ss_pred             CcEEEEe------------------------------------cCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCC
Q 019059          221 KHLLVTA------------------------------------ADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEY  264 (346)
Q Consensus       221 ~~~l~~~------------------------------------~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~  264 (346)
                      . +++..                                    ..+|.|..||+.+ .+.+-.+..+ .+.....+...+
T Consensus       393 g-~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~t-G~~~W~~~~~-~~~~~~~~~t~g  469 (668)
T 1kv9_A          393 G-LVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVK-QKAAWKVPYP-THWNGGTLSTAG  469 (668)
T ss_dssp             T-EEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTT-TEEEEEEEES-SSCCCCEEEETT
T ss_pred             C-EEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCC-CcEEEEccCC-CCCcCceeEeCC
Confidence            6 43321                                    1347899999987 4444444322 223333344456


Q ss_pred             CcEEEEecCCCeEEEEecCC
Q 019059          265 DGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       265 ~~~l~s~~~d~~i~iwd~~~  284 (346)
                       .+++.++.|+.|++||.++
T Consensus       470 -g~vf~g~~dg~l~a~d~~t  488 (668)
T 1kv9_A          470 -NLVFQGTAAGQMHAYSADK  488 (668)
T ss_dssp             -TEEEEECTTSEEEEEETTT
T ss_pred             -CEEEEECCcccchhhhhhc
Confidence             6888899999999999998

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.43  E-value=0.00017  Score=67.15  Aligned_cols=206  Identities=7%  Similarity=-0.084  Sum_probs=124.7

Q ss_pred             cccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCC
Q 019059           64 HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEE  143 (346)
Q Consensus        64 h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~  143 (346)
                      ....+.+|+|.+.+..|+.+   ....+.|..+++.....     .......+.........|++.+.+..++++-...+
T Consensus       422 ~~~~~~gl~~d~~~~~lY~s---D~~~~~I~~~~l~g~~~-----~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~  493 (791)
T 3m0c_C          422 NLRNVVALDTEVASNRIYWS---DLSQRMICSTQLDRAHG-----VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLG  493 (791)
T ss_dssp             SCSSEEEEEEETTTTEEEEE---ETTTTEEEEEEC-------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTT
T ss_pred             CCCceEEEeecccCCeeEEe---eccceeEEEEeccCCCC-----CcceeEEEecCCCCcceeeeeecCCcEEEEecCCC
Confidence            44567889999877777765   34567888888762000     01122223223445678899888876566656788


Q ss_pred             eEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec--CCeEEEEEccCCCccceeecc-c-eeEEEeCCC
Q 019059          144 NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC--ESSVQFWDLRSMGKTNSIEHA-H-VRNVDYDTK  219 (346)
Q Consensus       144 ~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~-~-v~~~~~~~~  219 (346)
                      .|.+.+++... ...+....    .....+|++.|....|+.+..  .+.|...++........+... . .+.|++++.
T Consensus       494 ~I~v~~ldG~~-~~~l~~~~----l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~  568 (791)
T 3m0c_C          494 TVSVADTKGVK-RKTLFREN----GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLL  568 (791)
T ss_dssp             EEEEEETTSSS-EEEEEECT----TCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETT
T ss_pred             eEEEEeCCCCe-EEEEEeCC----CCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecC
Confidence            99999987433 22222211    225789999998777777653  368999888754433323222 2 899999987


Q ss_pred             CCcEEEEecCCCeEEEEEcccCCcceeeecC--CCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCC
Q 019059          220 KKHLLVTAADESGIHLWDLRMLKAPIQELPG--HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTS  285 (346)
Q Consensus       220 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~  285 (346)
                      +..++++-.....|..+++.- ......+..  .-.....|++.. + .++++-...+.|...|..++
T Consensus       569 ~~~LYwaD~~~~~I~~~d~dG-~~~~~v~~~~~~l~~P~glav~~-~-~lYwtD~~~~~I~~~dk~tG  633 (791)
T 3m0c_C          569 SGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVFE-D-KVFWTDIINEAIFSANRLTG  633 (791)
T ss_dssp             TTEEEEEETTTTEEEEEETTS-CSCEEEEECTTTTSSEEEEEEET-T-EEEEEETTTTEEEEEETTTC
T ss_pred             CCeEEEEeCCCCcEEEEecCC-CceEEEecCCCccCCCCEEEEeC-C-EEEEEECCCCEEEEEeCCCC
Confidence            775666666667899999864 222222222  112344566533 2 55556566778888876653

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.37  E-value=2.4e-05  Score=67.73  Aligned_cols=154  Identities=9%  Similarity=0.068  Sum_probs=98.7

Q ss_pred             eeEEEEeCC-CCCcEEEEecCCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCC----eEEEEEcccCCc
Q 019059          170 YLSGGAWDP-HDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADES----GIHLWDLRMLKA  243 (346)
Q Consensus       170 ~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~  243 (346)
                      ....++++| ++..|+++...+.|+.+|+..++......... ...|+|+++++.++++...++    .+.+++....-.
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~  217 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFK  217 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSC
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCcee
Confidence            467889998 46667777665889999998765433333233 999999999984555544322    344444332111


Q ss_pred             ceeeecCCCcceEEEEeCC-CCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccc--ccccccccceeeEE
Q 019059          244 PIQELPGHTHWTWAVCCNP-EYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSL--LNSYSDYEDSVYGL  320 (346)
Q Consensus       244 ~~~~~~~~~~~v~~v~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~  320 (346)
                      ....+.. ......++++| ++ .++++-..++.|..++...                   ...  +..... ......+
T Consensus       218 ~~~~l~~-~~~p~giavdp~~g-~lyv~d~~~~~V~~~~~~~-------------------~~~~~~~~~~~-~~~P~gi  275 (430)
T 3tc9_A          218 VITELTK-GQNCNGAETHPING-ELYFNSWNAGQVFRYDFTT-------------------QETTPLFTIQD-SGWEFHI  275 (430)
T ss_dssp             SEEEEEE-CSSCCCEEECTTTC-CEEEEETTTTEEEEEETTT-------------------TEEEEEEECSS-SSCCEEE
T ss_pred             eeeeecc-CCCceEEEEeCCCC-EEEEEECCCCEEEEEECCC-------------------CcEEEEEEcCC-CCcceeE
Confidence            1122221 23457788999 66 7777766788999999875                   222  222222 2346789


Q ss_pred             EeCCCCCcEEEEeecCCeEEEeeec
Q 019059          321 AWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       321 ~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      +|+|++++++++-...+.|..++.+
T Consensus       276 a~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          276 QFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             EEcCCCCEEEEEECCCCEEEEEeCC
Confidence            9999998677777778889988764

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.34  E-value=0.001  Score=60.40  Aligned_cols=223  Identities=11%  Similarity=0.007  Sum_probs=140.2

Q ss_pred             CCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeecc
Q 019059           40 EENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH  119 (346)
Q Consensus        40 ~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~  119 (346)
                      ..+.|..+++.......  ......-..+.+++|.+.+..++.+   ...++.|..++++.         ......+...
T Consensus        13 ~~~~I~~i~l~~~~~~~--~~~~~~~~~~~~l~~d~~~~~lywt---D~~~~~I~r~~~~g---------~~~~~v~~~g   78 (628)
T 4a0p_A           13 RRADIRRISLETNNNNV--AIPLTGVKEASALDFDVTDNRIYWT---DISLKTISRAFMNG---------SALEHVVEFG   78 (628)
T ss_dssp             ETTEEEEEESSCTTCEE--ECCCCSCSCEEEEEEETTTTEEEEE---ETTTTEEEEEETTS---------CSCEEEECSS
T ss_pred             eCCcEEEEECCCCCcce--EEEcCCCCceEEEEEECCCCEEEEE---ECCCCeEEEEECCC---------CCcEEEEeCC
Confidence            34678888876543211  1111223467899999988888776   35667888888761         1111222222


Q ss_pred             CCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec--CCeEEEEEc
Q 019059          120 VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC--ESSVQFWDL  197 (346)
Q Consensus       120 ~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~i~d~  197 (346)
                      ......+++.+.+..++.+-...+.|.+.+++... ...+...    ......++++.|....|+.+..  .+.|...++
T Consensus        79 ~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~-~~~l~~~----~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~  153 (628)
T 4a0p_A           79 LDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH-RQVLVWK----DLDSPRALALDPAEGFMYWTEWGGKPKIDRAAM  153 (628)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT-CEEEECS----SCCCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred             CCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc-EEEEEeC----CCCCcccEEEccCCCeEEEeCCCCCCEEEEEeC
Confidence            24567888887777655555667899999987543 2222211    1235689999997777777652  568888888


Q ss_pred             cCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCe
Q 019059          198 RSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDST  276 (346)
Q Consensus       198 ~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~  276 (346)
                      ........+.... ...|++++++..++++-...+.|..+|+.....  ..+.........+++.. + .++++-...+.
T Consensus       154 dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~--~v~~~~l~~P~glav~~-~-~ly~tD~~~~~  229 (628)
T 4a0p_A          154 DGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR--EVIADDLPHPFGLTQYQ-D-YIYWTDWSRRS  229 (628)
T ss_dssp             TSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEEECCSCEEEEEEET-T-EEEEEETTTTE
T ss_pred             CCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce--EEeeccCCCceEEEEEC-C-EEEEecCCCCE
Confidence            7554333232222 899999998775667767778999999875322  33333334456777765 4 56666666788


Q ss_pred             EEEEecCCC
Q 019059          277 VNLWLVSTS  285 (346)
Q Consensus       277 i~iwd~~~~  285 (346)
                      |...|..++
T Consensus       230 I~~~dk~tg  238 (628)
T 4a0p_A          230 IERANKTSG  238 (628)
T ss_dssp             EEEEETTTC
T ss_pred             EEEEECCCC
Confidence            988887664

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.30  E-value=0.00088  Score=62.82  Aligned_cols=235  Identities=12%  Similarity=0.004  Sum_probs=134.6

Q ss_pred             cceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeee------------eeccCCceEEEEeecCCC
Q 019059           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAA------------LDAHVGKINCVLWWSSGR  133 (346)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~------------~~~~~~~i~~~~~~~~~~  133 (346)
                      ..|.++...+++...+.+     ..+.|.+++....       .......            .......|.++...++|.
T Consensus       258 ~~i~~i~~d~~g~lWigt-----~~~Gl~~~~~~~~-------~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~  325 (781)
T 3v9f_A          258 SYIFSIKQLKDNKLWIAT-----ELNGIMILDLQQN-------QFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN  325 (781)
T ss_dssp             CCEEEEEECTTSEEEEEE-----SSSCEEEEETTCC----------------CEEECBCSSTTSBSSSCEEEEEECSSCC
T ss_pred             ceEEEEEECCCCCEEEEe-----CCCCeEEECCCCC-------eeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC
Confidence            457888777766655443     3345777776521       1111000            012345789998888887


Q ss_pred             CcEEEEecCCeEEEEEcCCCCCCceeeec-----ccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccce---
Q 019059          134 HDKLVSIDEENIFLWSLDCSNKNAQVQSK-----QSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNS---  205 (346)
Q Consensus       134 ~~~~~~~~d~~i~vwd~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~---  205 (346)
                        +-++..++-|..++..+... ......     ........|.++...+++. |.+++.++.|..||..+++....   
T Consensus       326 --lWigt~~~Gl~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~  401 (781)
T 3v9f_A          326 --IWIGTWGGGINFISNAPPTF-HTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKEN  401 (781)
T ss_dssp             --EEEEEBSSCEEEECSSCCSC-EEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC---
T ss_pred             --EEEEecCCeEEEeCCCCCcc-eeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCC
Confidence              66666677888888765431 111110     1111234688888887665 56666666788999875432211   


Q ss_pred             --eeccceeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeec---CCCcceEEEEeCCCCCcEEEEecCCCeEEEE
Q 019059          206 --IEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP---GHTHWTWAVCCNPEYDGFILSAGTDSTVNLW  280 (346)
Q Consensus       206 --~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iw  280 (346)
                        +....|.++...+++. + ..|..++-+..+|.++ + ....+.   .....|.++...+++ .+ ..|+. +-|..|
T Consensus       402 ~~~~~~~v~~i~~d~~g~-l-Wigt~~~Gl~~~~~~~-~-~~~~~~~~~~~~~~v~~i~~d~~g-~l-wigt~-~Gl~~~  474 (781)
T 3v9f_A          402 RELLSNSVLCSLKDSEGN-L-WFGTYLGNISYYNTRL-K-KFQIIELEKNELLDVRVFYEDKNK-KI-WIGTH-AGVFVI  474 (781)
T ss_dssp             --CCCSBEEEEEECTTSC-E-EEEETTEEEEEECSSS-C-EEEECCSTTTCCCCEEEEEECTTS-EE-EEEET-TEEEEE
T ss_pred             CCCCCcceEEEEECCCCC-E-EEEeccCCEEEEcCCC-C-cEEEeccCCCCCCeEEEEEECCCC-CE-EEEEC-CceEEE
Confidence              1111189999988886 4 4466666788888764 2 233332   134678999888887 54 44444 458889


Q ss_pred             ecCCCCCCCCCcccccCCccccccccccccc-----cccceeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059          281 LVSTSNHDELPSESLVESPNQRANSLLNSYS-----DYEDSVYGLAWSSREPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       281 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~  344 (346)
                      |..+                   ++......     .....|.++...++|. +.+....+| +..|+.
T Consensus       475 ~~~~-------------------~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigt~~~G-l~~~~~  522 (781)
T 3v9f_A          475 DLAS-------------------KKVIHHYDTSNSQLLENFVRSIAQDSEGR-FWIGTFGGG-VGIYTP  522 (781)
T ss_dssp             ESSS-------------------SSCCEEECTTTSSCSCSCEEEEEECTTCC-EEEEESSSC-EEEECT
T ss_pred             eCCC-------------------CeEEecccCcccccccceeEEEEEcCCCC-EEEEEcCCC-EEEEeC
Confidence            8876                   11111000     1134588999988886 444333244 555554

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.30  E-value=7.3e-06  Score=75.52  Aligned_cols=180  Identities=12%  Similarity=0.036  Sum_probs=105.9

Q ss_pred             CcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCC---CCCceeeecccC
Q 019059           89 ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCS---NKNAQVQSKQSS  165 (346)
Q Consensus        89 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~---~~~~~~~~~~~~  165 (346)
                      ....|++.++.         .......+ .....+..++|.+.+..++++-...+.|+.+++.+.   .....+...   
T Consensus       384 ~~~~I~~id~~---------~~~~~~~~-~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~---  450 (699)
T 1n7d_A          384 NRHEVRKMTLD---------RSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR---  450 (699)
T ss_dssp             CTTC-CEECTT---------SCCEECCS-CCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCS---
T ss_pred             CccceEEEeCC---------CCcceeee-ccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeC---
Confidence            34566777765         22222222 223456788999877754444455789999998751   111111111   


Q ss_pred             CCceeeEEEEeCCCCCcEEEE-ecCCeEEEEEccCCCccceeecc-c-eeEEEeCCCCCcEEEEecCC-CeEEEEEcccC
Q 019059          166 GMLHYLSGGAWDPHDVNAVAA-TCESSVQFWDLRSMGKTNSIEHA-H-VRNVDYDTKKKHLLVTAADE-SGIHLWDLRML  241 (346)
Q Consensus       166 ~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~-~-v~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~  241 (346)
                       .......+++.+.+..|+.+ ...+.|.++++........+... . ...|+++|.+.+++++-... +.|.++++.. 
T Consensus       451 -~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG-  528 (699)
T 1n7d_A          451 -DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-  528 (699)
T ss_dssp             -CC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS-
T ss_pred             -CCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC-
Confidence             11245678888666666655 35678999998755433333222 2 88999999766455554333 6788887763 


Q ss_pred             Ccceeee-cCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          242 KAPIQEL-PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       242 ~~~~~~~-~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      . ....+ ...-...+.|+|+|++..++++-+..+.|..+++..
T Consensus       529 ~-~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG  571 (699)
T 1n7d_A          529 V-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  571 (699)
T ss_dssp             C-CCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred             C-CeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCC
Confidence            2 22222 222345678999998746666666678899999864

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.30  E-value=5.1e-05  Score=69.66  Aligned_cols=241  Identities=8%  Similarity=-0.039  Sum_probs=122.2

Q ss_pred             EeeecC-CCCceEEEEeecC-------CcceEEEEecCcccCCCCCccceeeeeeec-cCCceEEEEeecCCCCcEEEEe
Q 019059           70 DLSSCP-FDQRIFSTVFSTG-------ESYGAAIWQIPELYGQLNSPQLERIAALDA-HVGKINCVLWWSSGRHDKLVSI  140 (346)
Q Consensus        70 ~~~~~~-~~~~l~~~~~~~~-------~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~  140 (346)
                      .+++.| +++.++.+.....       ....+.+||...       .....+..+.. +.....++++..+++ ++++++
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t-------~~w~~~~~~~~~~~~~~~~~~~~~~g~-lyv~GG  261 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPST-------GIVSDRTVTVTKHDMFCPGISMDGNGQ-IVVTGG  261 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTT-------CCBCCCEEEECSCCCSSCEEEECTTSC-EEEECS
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCC-------CcEEeCcccCCCCCCccccccCCCCCC-EEEeCC
Confidence            456666 5555555421110       012577888762       23333333322 223334567778887 566665


Q ss_pred             -cCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEe-cC-----CeEEEEEccCCCccce-------e
Q 019059          141 -DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT-CE-----SSVQFWDLRSMGKTNS-------I  206 (346)
Q Consensus       141 -~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-----~~i~i~d~~~~~~~~~-------~  206 (346)
                       .+..+.+||..+.. .... . .... ...-.+++..++++.++.|+ .+     ..+.+||..+.+-...       +
T Consensus       262 ~~~~~v~~yd~~t~~-W~~~-~-~~~~-~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~  337 (656)
T 1k3i_A          262 NDAKKTSLYDSSSDS-WIPG-P-DMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPM  337 (656)
T ss_dssp             SSTTCEEEEEGGGTE-EEEC-C-CCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGG
T ss_pred             CCCCceEEecCcCCc-eeEC-C-CCCc-cccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccc
Confidence             35689999988643 1111 1 1111 11223455667888888887 33     5789999987652211       1


Q ss_pred             eccceeEEEeCCCCCcEEEEecCC---------CeEEEEEcccCCcceeeecCCC---------cceEEEEeCC-CCCcE
Q 019059          207 EHAHVRNVDYDTKKKHLLVTAADE---------SGIHLWDLRMLKAPIQELPGHT---------HWTWAVCCNP-EYDGF  267 (346)
Q Consensus       207 ~~~~v~~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~---------~~v~~v~~~~-~~~~~  267 (346)
                      ... -....+..++. +++.|+.+         ..+..||..... -......+.         ..-.++.|.. ++ ++
T Consensus       338 ~~~-~~~~~~~~~~~-iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~-w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~-~i  413 (656)
T 1k3i_A          338 LTA-DKQGLYRSDNH-AWLFGWKKGSVFQAGPSTAMNWYYTSGSG-DVKSAGKRQSNRGVAPDAMCGNAVMYDAVKG-KI  413 (656)
T ss_dssp             CCC-CTTGGGTTTCS-CCEEECGGGCEEECCSSSEEEEEECSTTC-EEEEEEECEETTEECCCCBTCEEEEEETTTT-EE
T ss_pred             ccc-cccceeecCCc-eEEEECCCCcEEEecCccceeeeecCCcc-eeecCCccccccccCCCCCCCceEeccCCCC-eE
Confidence            000 01122334444 55555444         356788877532 111111111         1223444433 55 78


Q ss_pred             EEEecCCC-----------eEEEEecCCCCCCCCCcccccCCcccccccccc--ccccccceeeEEEeCCCCCcEEEEee
Q 019059          268 ILSAGTDS-----------TVNLWLVSTSNHDELPSESLVESPNQRANSLLN--SYSDYEDSVYGLAWSSREPWIFASLS  334 (346)
Q Consensus       268 l~s~~~d~-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~  334 (346)
                      ++.|+.++           .|.+||..+.                 ....+.  .+.... .-.++...|+++ +++.|+
T Consensus       414 ~v~GG~~~~~~~~~~~~~~~v~~yd~~~~-----------------~W~~~~~~~mp~~R-~~~~~~~l~~g~-i~v~GG  474 (656)
T 1k3i_A          414 LTFGGSPDYQDSDATTNAHIITLGEPGTS-----------------PNTVFASNGLYFAR-TFHTSVVLPDGS-TFITGG  474 (656)
T ss_dssp             EEECCBSSSSSSBCCCCEEEEECCSTTSC-----------------CEEEECTTCCSSCC-BSCEEEECTTSC-EEEECC
T ss_pred             EEEeCCCCCCCCCcCCcceEEEcCCCCCC-----------------CeeEEccCCCCCCc-ccCCeEECCCCC-EEEECC
Confidence            88887542           5777776650                 011111  111111 123445668886 888888


Q ss_pred             cC-----------CeEEEeeec
Q 019059          335 YD-----------GRVRNHMLE  345 (346)
Q Consensus       335 ~d-----------~~v~vw~~~  345 (346)
                      .+           ..+.+||.+
T Consensus       475 ~~~~~~~~~~~~~~~v~~ydp~  496 (656)
T 1k3i_A          475 QRRGIPFEDSTPVFTPEIYVPE  496 (656)
T ss_dssp             BSBCCTTCCCSBCCCCEEEEGG
T ss_pred             cccCcCcCCCCcccceEEEcCC
Confidence            65           457888864

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.25  E-value=0.0018  Score=58.79  Aligned_cols=218  Identities=11%  Similarity=-0.008  Sum_probs=130.1

Q ss_pred             CcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCc
Q 019059           89 ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGML  168 (346)
Q Consensus        89 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  168 (346)
                      ....|+..+++.       ........+ ..-..+..++|.+.+..++.+-..++.|..++++... ...+....    .
T Consensus        13 ~~~~I~~i~l~~-------~~~~~~~~~-~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~-~~~v~~~g----~   79 (628)
T 4a0p_A           13 RRADIRRISLET-------NNNNVAIPL-TGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSA-LEHVVEFG----L   79 (628)
T ss_dssp             ETTEEEEEESSC-------TTCEEECCC-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSS----C
T ss_pred             eCCcEEEEECCC-------CCcceEEEc-CCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCC-cEEEEeCC----C
Confidence            445788888872       111111112 1234678999999877655565668899999987543 22222211    1


Q ss_pred             eeeEEEEeCCCCCcEEEEe-cCCeEEEEEccCCCccceeecc-c-eeEEEeCCCCCcEEEEe-cCCCeEEEEEcccCCcc
Q 019059          169 HYLSGGAWDPHDVNAVAAT-CESSVQFWDLRSMGKTNSIEHA-H-VRNVDYDTKKKHLLVTA-ADESGIHLWDLRMLKAP  244 (346)
Q Consensus       169 ~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~-~-v~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~  244 (346)
                      ....++++.+.+..|+.+. ..+.|.+.++........+... . ...|+++|....++++- +..+.|...++.- . .
T Consensus        80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG-~-~  157 (628)
T 4a0p_A           80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDG-S-E  157 (628)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-C-S
T ss_pred             CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCC-C-c
Confidence            2467888887777776665 4678999998754432222111 1 89999999665455554 2356788888764 2 2


Q ss_pred             eeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCC
Q 019059          245 IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS  324 (346)
Q Consensus       245 ~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  324 (346)
                      ...+...-.....|++++++.++.++-...+.|...|+..                   ... ..+...-....++++..
T Consensus       158 ~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG-------------------~~~-~v~~~~l~~P~glav~~  217 (628)
T 4a0p_A          158 RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG-------------------LNR-EVIADDLPHPFGLTQYQ  217 (628)
T ss_dssp             CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTS-------------------CSC-EEEEECCSCEEEEEEET
T ss_pred             eEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCC-------------------Cce-EEeeccCCCceEEEEEC
Confidence            3333334567789999998735555556677899999875                   111 11222222245666654


Q ss_pred             CCCcEEEEeecCCeEEEee
Q 019059          325 REPWIFASLSYDGRVRNHM  343 (346)
Q Consensus       325 ~~~~~l~s~~~d~~v~vw~  343 (346)
                       + .++.+-...+.|...|
T Consensus       218 -~-~ly~tD~~~~~I~~~d  234 (628)
T 4a0p_A          218 -D-YIYWTDWSRRSIERAN  234 (628)
T ss_dssp             -T-EEEEEETTTTEEEEEE
T ss_pred             -C-EEEEecCCCCEEEEEE
Confidence             3 3666655566666655

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.25  E-value=7.4e-05  Score=68.58  Aligned_cols=151  Identities=9%  Similarity=-0.014  Sum_probs=88.8

Q ss_pred             CCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccC----CceEEEEeecCCCCcEEEEec------CCeEE
Q 019059           77 DQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV----GKINCVLWWSSGRHDKLVSID------EENIF  146 (346)
Q Consensus        77 ~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~------d~~i~  146 (346)
                      +..+++.    ..|+.|..+|..         +++.+-.+....    ..+.+.-...++.  ++++..      ++.|.
T Consensus       117 ~~~v~v~----~~dg~l~alD~~---------tG~~~W~~~~~~~~~~~~~~~~P~v~~~~--v~vg~~~~~~~~~g~v~  181 (668)
T 1kv9_A          117 GDKVYVG----TLDGRLIALDAK---------TGKAIWSQQTTDPAKPYSITGAPRVVKGK--VIIGNGGAEYGVRGFVS  181 (668)
T ss_dssp             BTEEEEE----CTTSEEEEEETT---------TCCEEEEEECSCTTSSCBCCSCCEEETTE--EEECCBCTTTCCBCEEE
T ss_pred             CCEEEEE----cCCCEEEEEECC---------CCCEeeeeccCCCCCcceecCCCEEECCE--EEEeCCCCCcCCCCEEE
Confidence            3455553    578899999987         555554443211    1111100011333  555432      58999


Q ss_pred             EEEcCCCCCCceeeeccc-CC-------------------------CceeeEEEEeCCCCCcEEEEecCC----------
Q 019059          147 LWSLDCSNKNAQVQSKQS-SG-------------------------MLHYLSGGAWDPHDVNAVAATCES----------  190 (346)
Q Consensus       147 vwd~~~~~~~~~~~~~~~-~~-------------------------~~~~v~~~~~~~~~~~l~~~~~d~----------  190 (346)
                      .+|..+++.......... ..                         .......+++.|+...++.+..++          
T Consensus       182 a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~  261 (668)
T 1kv9_A          182 AYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSP  261 (668)
T ss_dssp             EEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHST
T ss_pred             EEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCC
Confidence            999998887666543110 00                         000112467888778888877665          


Q ss_pred             ---------eEEEEEccCCCccceeeccc-------------eeEEEeCCCCC--cEEEEecCCCeEEEEEcccCCcce
Q 019059          191 ---------SVQFWDLRSMGKTNSIEHAH-------------VRNVDYDTKKK--HLLVTAADESGIHLWDLRMLKAPI  245 (346)
Q Consensus       191 ---------~i~i~d~~~~~~~~~~~~~~-------------v~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~  245 (346)
                               .|..+|.++++.+-.++..+             ...+.+  +++  ..++.++.+|.++++|.++ ++.+
T Consensus       262 ~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~--~G~~~~~v~~~~~~G~l~~lD~~t-G~~l  337 (668)
T 1kv9_A          262 GGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNI--DGKPRKVLMQAPKNGFFYVLDRTN-GKLI  337 (668)
T ss_dssp             TCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE--TTEEEEEEEECCTTSEEEEEETTT-CCEE
T ss_pred             CCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEecc--CCcEEEEEEEECCCCEEEEEECCC-CCEe
Confidence                     49999999999876665321             122222  342  2588889999999999887 4344

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.21  E-value=0.00052  Score=59.40  Aligned_cols=152  Identities=8%  Similarity=-0.053  Sum_probs=90.5

Q ss_pred             ceEEEEeecC--CCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCC-----eEEE
Q 019059          122 KINCVLWWSS--GRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCES-----SVQF  194 (346)
Q Consensus       122 ~i~~~~~~~~--~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~i  194 (346)
                      ....++|.|+  +.. ++.+...+.|+.+|..++.. ..+..     .......+++++++. |+++...+     .+..
T Consensus       140 ~P~gvavd~~s~~g~-Lyv~D~~~~I~~id~~~g~v-~~~~~-----~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~  211 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDD-LYWVGQRDAFRHVDFVNQYV-DIKTT-----NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYL  211 (433)
T ss_dssp             CCCEEEECTTTTTCE-EEEECBTSCEEEEETTTTEE-EEECC-----CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEE
T ss_pred             CCceEEEccccCCCE-EEEEeCCCCEEEEECCCCEE-EEeec-----CCCCccEEEECCCCC-EEEEcCCCCcccceEEE
Confidence            3568999985  332 55552238999999865432 22211     123578999999999 66655321     2333


Q ss_pred             EEccCCCcc-ceeeccc-eeEEEeCC-CCCcEEEEecCCCeEEEEEcccCCcceeee-cC-CCcceEEEEeCCCCCc-EE
Q 019059          195 WDLRSMGKT-NSIEHAH-VRNVDYDT-KKKHLLVTAADESGIHLWDLRMLKAPIQEL-PG-HTHWTWAVCCNPEYDG-FI  268 (346)
Q Consensus       195 ~d~~~~~~~-~~~~~~~-v~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~-~~~~v~~v~~~~~~~~-~l  268 (346)
                      .+...+... ..+.... ...++++| ++. ++++-..++.|+.+|... ......+ .. .......++|+|++ . +.
T Consensus       212 ~~~~~~~~~~~~~~~~~~P~giavd~~~G~-lyv~d~~~~~V~~~d~~~-g~~~~~~~~~~~~~~~~~ia~dpdG-~~LY  288 (433)
T 4hw6_A          212 FTRASGFTERLSLCNARGAKTCAVHPQNGK-IYYTRYHHAMISSYDPAT-GTLTEEEVMMDTKGSNFHIVWHPTG-DWAY  288 (433)
T ss_dssp             ECGGGTTCCEEEEEECSSBCCCEECTTTCC-EEECBTTCSEEEEECTTT-CCEEEEEEECSCCSSCEEEEECTTS-SEEE
T ss_pred             EECCCCeeccccccccCCCCEEEEeCCCCe-EEEEECCCCEEEEEECCC-CeEEEEEeccCCCCCcccEEEeCCC-CEEE
Confidence            443322211 1122122 78899999 665 776766778999999874 2221222 11 12233469999999 6 55


Q ss_pred             EEecCCCeEEEEecCC
Q 019059          269 LSAGTDSTVNLWLVST  284 (346)
Q Consensus       269 ~s~~~d~~i~iwd~~~  284 (346)
                      ++-...+.|+.++...
T Consensus       289 vad~~~~~I~~~~~d~  304 (433)
T 4hw6_A          289 IIYNGKHCIYRVDYNR  304 (433)
T ss_dssp             EEETTTTEEEEEEBCT
T ss_pred             EEeCCCCEEEEEeCCC
Confidence            5556678999988763

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.21  E-value=0.0016  Score=61.17  Aligned_cols=233  Identities=12%  Similarity=0.077  Sum_probs=133.7

Q ss_pred             cceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeee-------eeccCCceEEEEeecCCCCcEEE
Q 019059           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAA-------LDAHVGKINCVLWWSSGRHDKLV  138 (346)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~-------~~~~~~~i~~~~~~~~~~~~~~~  138 (346)
                      ..|.++...+++..-+.+     .++.|..++...       ........       -......|.++...++|.  +.+
T Consensus       313 ~~v~~i~~D~~g~lWigt-----~~~Gl~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~--lWi  378 (781)
T 3v9f_A          313 ASARYIFQDSFNNIWIGT-----WGGGINFISNAP-------PTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK--LWI  378 (781)
T ss_dssp             SCEEEEEECSSCCEEEEE-----BSSCEEEECSSC-------CSCEEEC----CCCSSCCSSSCEEEEEECTTSC--EEE
T ss_pred             CeEEEEEEeCCCCEEEEe-----cCCeEEEeCCCC-------CcceeeccCccccccCCCCCcceEEEEEcCCCC--EEE
Confidence            467788877777544443     455677777651       01111100       001235689998888877  566


Q ss_pred             EecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceee---ccc-eeEE
Q 019059          139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE---HAH-VRNV  214 (346)
Q Consensus       139 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~-v~~~  214 (346)
                      +..++-|..++..+... ..+. .........|.++...+++. |.+++.++.|..+|..+++......   ... |.++
T Consensus       379 gt~~~Gl~~~~~~~~~~-~~~~-~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i  455 (781)
T 3v9f_A          379 GTDGGGINVFENGKRVA-IYNK-ENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVF  455 (781)
T ss_dssp             EEBSSCEEEEETTEEEE-ECC------CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEE
T ss_pred             EeCCCcEEEEECCCCeE-EEcc-CCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEE
Confidence            66567788888764321 1111 11112234688888877665 5556666779999987665322111   112 9999


Q ss_pred             EeCCCCCcEEEEecCCCeEEEEEcccCCcceeeec-CC-----CcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCC
Q 019059          215 DYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP-GH-----THWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHD  288 (346)
Q Consensus       215 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~-----~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  288 (346)
                      ...+++. +.+ |.. +-+..+|..+ .. ...+. ..     ...|.++...++| .+.+ |+.++-|..||...    
T Consensus       456 ~~d~~g~-lwi-gt~-~Gl~~~~~~~-~~-~~~~~~~~~~~~~~~~i~~i~~d~~g-~lWi-gt~~~Gl~~~~~~~----  524 (781)
T 3v9f_A          456 YEDKNKK-IWI-GTH-AGVFVIDLAS-KK-VIHHYDTSNSQLLENFVRSIAQDSEG-RFWI-GTFGGGVGIYTPDM----  524 (781)
T ss_dssp             EECTTSE-EEE-EET-TEEEEEESSS-SS-CCEEECTTTSSCSCSCEEEEEECTTC-CEEE-EESSSCEEEECTTC----
T ss_pred             EECCCCC-EEE-EEC-CceEEEeCCC-Ce-EEecccCcccccccceeEEEEEcCCC-CEEE-EEcCCCEEEEeCCC----
Confidence            9998886 444 444 5688898775 22 22221 11     3578899998888 5444 44433477788765    


Q ss_pred             CCCcccccCCccccccccccccc----cccceeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059          289 ELPSESLVESPNQRANSLLNSYS----DYEDSVYGLAWSSREPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~  344 (346)
                                     .+. ..+.    -....|.++...++|. +.++. .+|.|..|+.
T Consensus       525 ---------------~~~-~~~~~~~~l~~~~i~~i~~d~~g~-lWi~T-~~Glv~~~d~  566 (781)
T 3v9f_A          525 ---------------QLV-RKFNQYEGFCSNTINQIYRSSKGQ-MWLAT-GEGLVCFPSA  566 (781)
T ss_dssp             ---------------CEE-EEECTTTTCSCSCEEEEEECTTSC-EEEEE-TTEEEEESCT
T ss_pred             ---------------CeE-EEccCCCCCCCCeeEEEEECCCCC-EEEEE-CCCceEEECC
Confidence                           211 1111    1234588999988886 44443 3665466664

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.20  E-value=0.0012  Score=59.88  Aligned_cols=182  Identities=9%  Similarity=-0.024  Sum_probs=108.6

Q ss_pred             CcceEEEEecCcccCCCCCccce-eeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCC
Q 019059           89 ESYGAAIWQIPELYGQLNSPQLE-RIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGM  167 (346)
Q Consensus        89 ~d~~i~vw~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~  167 (346)
                      ....|+..+++.         .. ........-.....++|++.+..++.+-...+.|..++++.......+....    
T Consensus        16 ~~~~I~~i~~~~---------~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~----   82 (619)
T 3s94_A           16 NRRDLRLVDATN---------GKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG----   82 (619)
T ss_dssp             CSSBEEEECCC------------------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSS----
T ss_pred             ccccEEEEeCCC---------CcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCC----
Confidence            556788888862         11 1111222344578999999777655555557889999987542212222211    


Q ss_pred             ceeeEEEEeCCCCCcEEEEe-cCCeEEEEEccCCCccceeec-cc-eeEEEeCCCCCcEEEEec-CCCeEEEEEcccCCc
Q 019059          168 LHYLSGGAWDPHDVNAVAAT-CESSVQFWDLRSMGKTNSIEH-AH-VRNVDYDTKKKHLLVTAA-DESGIHLWDLRMLKA  243 (346)
Q Consensus       168 ~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~-~~-v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~  243 (346)
                      .....++++.+.+..|+.+. ..+.|.+.++........+.. .. ...|+++|.+..++++-- ..+.|...++.- ..
T Consensus        83 ~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG-~~  161 (619)
T 3s94_A           83 LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SS  161 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTS-CS
T ss_pred             CCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCC-Cc
Confidence            12578899998777777665 478999999885543222211 12 899999998664666542 246777777663 22


Q ss_pred             ceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          244 PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       244 ~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      ........-...+.|++++++.++.++-...+.|...|+..
T Consensus       162 ~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG  202 (619)
T 3s94_A          162 RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG  202 (619)
T ss_dssp             CEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSC
T ss_pred             eEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCC
Confidence            22222223456789999987635555555667888888864

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.18  E-value=0.00024  Score=63.94  Aligned_cols=136  Identities=12%  Similarity=0.024  Sum_probs=81.1

Q ss_pred             eEEEEEcCCCCCCceeeecccC-----CCceeeEEEEeCCCCC---cEEEEecCCeEEEEEccCCCccceeeccc-----
Q 019059          144 NIFLWSLDCSNKNAQVQSKQSS-----GMLHYLSGGAWDPHDV---NAVAATCESSVQFWDLRSMGKTNSIEHAH-----  210 (346)
Q Consensus       144 ~i~vwd~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-----  210 (346)
                      .|..+|..+++...........     ....++. +...++++   .++.++.+|.++++|..+++.+.......     
T Consensus       273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~  351 (571)
T 2ad6_A          273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF  351 (571)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred             EEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence            5889999988766555432211     1111221 22223563   46667789999999999988664433111     


Q ss_pred             ----------e--------------------------eEEEeCCCCCcEEEEec--------------------------
Q 019059          211 ----------V--------------------------RNVDYDTKKKHLLVTAA--------------------------  228 (346)
Q Consensus       211 ----------v--------------------------~~~~~~~~~~~~l~~~~--------------------------  228 (346)
                                +                          ..++++|+.. ++++..                          
T Consensus       352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g-~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~  430 (571)
T 2ad6_A          352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESR-TLYAGLNHICMDWEPFMLPYRAGQFFVGATLA  430 (571)
T ss_dssp             EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTT-EEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred             ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCC-EEEEEchhccccccccccccccCCccccccce
Confidence                      0                          2457778776 444432                          


Q ss_pred             -----------CCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          229 -----------DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       229 -----------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                                 .++.|..||+.+ .+.+-++.. ...+....+...+ .+++.++.|+.|+.+|.++
T Consensus       431 ~~~~~~~~~~~~~g~l~a~D~~t-G~~~W~~~~-~~~~~~~~~~t~g-g~v~~g~~dg~l~a~D~~t  494 (571)
T 2ad6_A          431 MYPGPNGPTKKEMGQIRAFDLTT-GKAKWTKWE-KFAAWGGTLYTKG-GLVWYATLDGYLKALDNKD  494 (571)
T ss_dssp             EEECTTSTTSCCCEEEEEECTTT-CCEEEEEEE-SSCCCSBCEEETT-TEEEEECTTSEEEEEETTT
T ss_pred             eccCccccCCCCCCeEEEEECCC-CCEEEEecC-CCCccceeEEECC-CEEEEEcCCCeEEEEECCC
Confidence                       347899999887 434444432 2222222222334 5677789999999999998

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.16  E-value=0.00023  Score=64.00  Aligned_cols=155  Identities=10%  Similarity=-0.042  Sum_probs=85.0

Q ss_pred             CCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccC----CceEEEEeecCCCCcEEEEec------CCeEE
Q 019059           77 DQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV----GKINCVLWWSSGRHDKLVSID------EENIF  146 (346)
Q Consensus        77 ~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~------d~~i~  146 (346)
                      +..+++.    ..|+.|..+|..         +++.+-......    ..+.+--...++.  +++++.      ++.|.
T Consensus       115 ~~~v~v~----~~dg~l~alD~~---------tG~~~W~~~~~~~~~~~~~~~~P~v~~g~--v~vg~~~~~~~~~g~v~  179 (571)
T 2ad6_A          115 AGQIVKK----QANGHLLALDAK---------TGKINWEVEVCDPKVGSTLTQAPFVAKDT--VLMGCSGAELGVRGAVN  179 (571)
T ss_dssp             TTEEEEE----CTTSEEEEEETT---------TCCEEEEEECCCGGGTCBCCSCCEEETTE--EEEECBCGGGTCCCEEE
T ss_pred             CCEEEEE----eCCCEEEEEECC---------CCCEEEEecCCCCCccceeccCCEEECCE--EEEEecCCccCCCCEEE
Confidence            4455553    568889999987         455544332111    0111100111343  555533      78999


Q ss_pred             EEEcCCCCCCceeeecccC---------------------------------CCceeeEEEEeCCCCCcEEEEecC----
Q 019059          147 LWSLDCSNKNAQVQSKQSS---------------------------------GMLHYLSGGAWDPHDVNAVAATCE----  189 (346)
Q Consensus       147 vwd~~~~~~~~~~~~~~~~---------------------------------~~~~~v~~~~~~~~~~~l~~~~~d----  189 (346)
                      .+|..+++...+.......                                 +-......+++.++...++.+..+    
T Consensus       180 a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~  259 (571)
T 2ad6_A          180 AFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPW  259 (571)
T ss_dssp             EEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCS
T ss_pred             EEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccc
Confidence            9999988766555432110                                 000000134556665666666532    


Q ss_pred             ------------CeEEEEEccCCCccceeeccc-----------eeEEEeCCCCC--cEEEEecCCCeEEEEEcccCCcc
Q 019059          190 ------------SSVQFWDLRSMGKTNSIEHAH-----------VRNVDYDTKKK--HLLVTAADESGIHLWDLRMLKAP  244 (346)
Q Consensus       190 ------------~~i~i~d~~~~~~~~~~~~~~-----------v~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~  244 (346)
                                  +.|..+|.++++.+-.++..+           ..-+...++|+  .+++.++.+|.++++|.++ .+.
T Consensus       260 ~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~  338 (571)
T 2ad6_A          260 NETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNREN-GNL  338 (571)
T ss_dssp             CGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTT-CCE
T ss_pred             cCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCC-CCE
Confidence                        359999999998776654221           11112223553  2577788899999999887 434


Q ss_pred             eee
Q 019059          245 IQE  247 (346)
Q Consensus       245 ~~~  247 (346)
                      +..
T Consensus       339 ~w~  341 (571)
T 2ad6_A          339 IVA  341 (571)
T ss_dssp             EEE
T ss_pred             Eee
Confidence            433

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.15  E-value=0.00077  Score=58.78  Aligned_cols=159  Identities=9%  Similarity=0.011  Sum_probs=98.2

Q ss_pred             ceEEEEeecC-CCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEe-------CCCCCcEEEEecCC---
Q 019059          122 KINCVLWWSS-GRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAW-------DPHDVNAVAATCES---  190 (346)
Q Consensus       122 ~i~~~~~~~~-~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~~l~~~~~d~---  190 (346)
                      ....|+|.|. +..++++....+.|++.|+.++. ...+.. ...........++|       ++++..|+++...+   
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~-v~~l~~-~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~  217 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRM-LSSPLN-INTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKG  217 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTE-EEEEEC-CTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCE-EEEEEc-cCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCc
Confidence            4578999983 55444444444678888887543 222222 11122346889999       99999777776543   


Q ss_pred             ----eEEEEEccC-CCcc-----ceeec-cceeEEEeCCCCCcEEEEecCCCeEEEEEcc-------cCCc-----c---
Q 019059          191 ----SVQFWDLRS-MGKT-----NSIEH-AHVRNVDYDTKKKHLLVTAADESGIHLWDLR-------MLKA-----P---  244 (346)
Q Consensus       191 ----~i~i~d~~~-~~~~-----~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~-------~~~~-----~---  244 (346)
                          .|.+++... +...     ..+.. .+...++.+|++.+++++-..++.|..+|+.       ....     +   
T Consensus       218 ~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~  297 (496)
T 3kya_A          218 DESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP  297 (496)
T ss_dssp             GGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred             ccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence                366676443 2221     12221 1278889999666588888888999999987       3221     0   


Q ss_pred             --eee-ec-CCCcceEEEEeCCCCCcE-EEEecCCCeEEEEecC
Q 019059          245 --IQE-LP-GHTHWTWAVCCNPEYDGF-ILSAGTDSTVNLWLVS  283 (346)
Q Consensus       245 --~~~-~~-~~~~~v~~v~~~~~~~~~-l~s~~~d~~i~iwd~~  283 (346)
                        ... +. +.......|+|+|+| .. .++-+....|+.++..
T Consensus       298 g~~~~l~~~~~~~~p~~ia~~p~G-~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          298 NTFKQLFTIADPSWEFQIFIHPTG-KYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             TTEEEEEECSSSSCCEEEEECTTS-SEEEEEETTTTEEEEEEEE
T ss_pred             cccceeEecCCCCCceEEEEcCCC-CEEEEEeCCCCEEEEEecC
Confidence              111 11 123456889999999 64 5555667789987654

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.10  E-value=0.0021  Score=57.96  Aligned_cols=159  Identities=11%  Similarity=0.002  Sum_probs=89.3

Q ss_pred             eeecCCCCc----eEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccC----CceEE-EEeecCCCCcEEEEe-
Q 019059           71 LSSCPFDQR----IFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV----GKINC-VLWWSSGRHDKLVSI-  140 (346)
Q Consensus        71 ~~~~~~~~~----l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~-~~~~~~~~~~~~~~~-  140 (346)
                      ++++|.+..    +++.    ..|+.|.-+|..         +++.+-......    ..+.+ ... .++.  +++++ 
T Consensus       111 ~av~p~~g~~~~rV~v~----t~dg~l~AlDa~---------TG~~~W~~~~~~~~~~~~~~ssP~v-~~g~--V~vg~~  174 (599)
T 1w6s_A          111 LAYWPGDGKTPALILKT----QLDGNVAALNAE---------TGETVWKVENSDIKVGSTLTIAPYV-VKDK--VIIGSS  174 (599)
T ss_dssp             CEEECCCSSSCCEEEEE----CTTSEEEEEETT---------TCCEEEEEECCCGGGTCBCCSCCEE-ETTE--EEECCB
T ss_pred             eEEEecCCcceeEEEEE----cCCCEEEEEECC---------CCCEEEeecCCCCCccceeecCCEE-ECCE--EEEEec
Confidence            445444444    6553    578888888887         455543332211    01111 111 2343  55553 


Q ss_pred             -----cCCeEEEEEcCCCCCCceeeecccCC---------------------------------CceeeEEEEeCCCCCc
Q 019059          141 -----DEENIFLWSLDCSNKNAQVQSKQSSG---------------------------------MLHYLSGGAWDPHDVN  182 (346)
Q Consensus       141 -----~d~~i~vwd~~~~~~~~~~~~~~~~~---------------------------------~~~~v~~~~~~~~~~~  182 (346)
                           .++.|+-+|..+++...+........                                 -...-...++.+....
T Consensus       175 g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~  254 (599)
T 1w6s_A          175 GAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNL  254 (599)
T ss_dssp             CGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTE
T ss_pred             ccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCE
Confidence                 37899999999887665554322100                                 0000012345566667


Q ss_pred             EEEEecC----------------CeEEEEEccCCCccceeeccc--e---------eEEEeC-CCCC--cEEEEecCCCe
Q 019059          183 AVAATCE----------------SSVQFWDLRSMGKTNSIEHAH--V---------RNVDYD-TKKK--HLLVTAADESG  232 (346)
Q Consensus       183 l~~~~~d----------------~~i~i~d~~~~~~~~~~~~~~--v---------~~~~~~-~~~~--~~l~~~~~dg~  232 (346)
                      ++.+..+                +.|..+|.++++.+-.++..+  .         .-+... .+|+  .+++.++.+|.
T Consensus       255 vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~  334 (599)
T 1w6s_A          255 IYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGI  334 (599)
T ss_dssp             EEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSE
T ss_pred             EEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcE
Confidence            7777654                379999999998876665322  1         111221 4562  26777889999


Q ss_pred             EEEEEcccCCccee
Q 019059          233 IHLWDLRMLKAPIQ  246 (346)
Q Consensus       233 i~i~d~~~~~~~~~  246 (346)
                      ++++|.++ .+++.
T Consensus       335 l~~lD~~t-G~~lw  347 (599)
T 1w6s_A          335 VYTLDRTD-GALVS  347 (599)
T ss_dssp             EEEEETTT-CCEEE
T ss_pred             EEEEECCC-CCEee
Confidence            99999887 44443

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=98.09  E-value=0.0032  Score=52.87  Aligned_cols=234  Identities=9%  Similarity=0.037  Sum_probs=124.9

Q ss_pred             cceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeee---ccCCceEEEEeecC---CCCcEEEE
Q 019059           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD---AHVGKINCVLWWSS---GRHDKLVS  139 (346)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~---~~~~~~~~  139 (346)
                      .....++|.|+++.+++-     .++.|.+++..        .. +.+..+.   ........|+++|+   +..++++-
T Consensus        29 ~~P~~ia~~pdG~l~V~e-----~~g~I~~~d~~--------G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~   94 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVTE-----RPGRLVLISPS--------GK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYA   94 (354)
T ss_dssp             SCEEEEEEEETTEEEEEE-----TTTEEEEECSS--------CE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEE
T ss_pred             CCCeEEEEcCCCeEEEEe-----CCCEEEEEeCC--------Cc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEE
Confidence            456889999998755442     45788888632        01 2222221   22346789999998   55444444


Q ss_pred             ec---C----CeEEEEEcCCCC-CC---ceeeecccCCCceeeEEEEeCCCCCcEEEEec-------------CCeEEEE
Q 019059          140 ID---E----ENIFLWSLDCSN-KN---AQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-------------ESSVQFW  195 (346)
Q Consensus       140 ~~---d----~~i~vwd~~~~~-~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------------d~~i~i~  195 (346)
                      ..   +    ..|..|+..... ..   ..+..............++|.|++...++.+.             .+.|.-+
T Consensus        95 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri  174 (354)
T 3a9g_A           95 SYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRV  174 (354)
T ss_dssp             EEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEE
T ss_pred             eccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEE
Confidence            42   3    577778776431 00   11111011111224567999999975555432             1456666


Q ss_pred             EccCCC-------ccceeeccc--eeEEEeCC-CCCcEEEEecCCC---eEEEEEccc---------------CCcceee
Q 019059          196 DLRSMG-------KTNSIEHAH--VRNVDYDT-KKKHLLVTAADES---GIHLWDLRM---------------LKAPIQE  247 (346)
Q Consensus       196 d~~~~~-------~~~~~~~~~--v~~~~~~~-~~~~~l~~~~~dg---~i~i~d~~~---------------~~~~~~~  247 (346)
                      +....-       ....+..++  ...++|+| ++. ++++-....   .|.+...-.               ...++..
T Consensus       175 ~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~-l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~  253 (354)
T 3a9g_A          175 DEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGV-MVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVID  253 (354)
T ss_dssp             CTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCC-EEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEE
T ss_pred             cCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCC-EEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEee
Confidence            654320       112233344  88999999 565 555533222   233322110               0123333


Q ss_pred             ecCCCcceEEEEeC-------CCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccc--cc-ccccccee
Q 019059          248 LPGHTHWTWAVCCN-------PEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLL--NS-YSDYEDSV  317 (346)
Q Consensus       248 ~~~~~~~v~~v~~~-------~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~v  317 (346)
                      +.........+.|.       .+| .++++.-..+.|...++...                  ++..  .. +.+....+
T Consensus       254 ~~~~~~ap~G~~~y~g~~fp~~~G-~l~v~~~~~~~v~~~~~~~~------------------g~~~~~~~~~~~~~~rp  314 (354)
T 3a9g_A          254 TGSETWAPSGASFVHGDMFPGLRG-WLLIACLRGSMLAAVNFGDN------------------MEVRKISTFFKNVFGRL  314 (354)
T ss_dssp             CTTCCCCEEEEEECCSSSCGGGTT-EEEEEETTTTEEEEEEECGG------------------GCEEEEEEECTTTSCCE
T ss_pred             cCCCCcCCcceEEECCCCCcccCC-cEEEEEcCCCEEEEEEECCC------------------CcccceeeeccCCCCCe
Confidence            31122356777773       456 67776666778888887640                  1110  11 22223458


Q ss_pred             eEEEeCCCCCcEEEEee
Q 019059          318 YGLAWSSREPWIFASLS  334 (346)
Q Consensus       318 ~~~~~~~~~~~~l~s~~  334 (346)
                      .++++.|+|. ++++..
T Consensus       315 ~~v~~~pDG~-lyv~~~  330 (354)
T 3a9g_A          315 RDVVIDDDGG-ILISTS  330 (354)
T ss_dssp             EEEEECTTSC-EEEEEC
T ss_pred             eEEEECCCCc-EEEEEe
Confidence            9999999997 666554

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.09  E-value=0.0013  Score=54.97  Aligned_cols=175  Identities=7%  Similarity=0.026  Sum_probs=102.4

Q ss_pred             CcceEEEEecCcccCCCCCccceeeeeeec-----cCCceEEEEeec--CCC-CcEEEEec--CCeEEEEEcCCCCCCce
Q 019059           89 ESYGAAIWQIPELYGQLNSPQLERIAALDA-----HVGKINCVLWWS--SGR-HDKLVSID--EENIFLWSLDCSNKNAQ  158 (346)
Q Consensus        89 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~--~~~-~~~~~~~~--d~~i~vwd~~~~~~~~~  158 (346)
                      .+|.|.++|..+...     +.+.+. +.+     ..-....+.+.+  ++. +++++-..  +..|.+|+++.......
T Consensus        81 ~~G~I~~~d~~~~~~-----~~~~l~-~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~  154 (355)
T 3sre_A           81 KSGKILLMDLNEKEP-----AVSELE-IIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLL  154 (355)
T ss_dssp             -CCEEEEEETTSSSC-----CEEECE-EECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEE
T ss_pred             CCCeEEEEecCCCCC-----ceEEEE-ccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEE
Confidence            578899999862111     122222 222     234667888766  344 34444422  57889998876544333


Q ss_pred             eeecccCCCceeeEEEEeCCCCCcEEEEe-----------------cCCeEEEEEccCCCccceeeccc--eeEEEeCCC
Q 019059          159 VQSKQSSGMLHYLSGGAWDPHDVNAVAAT-----------------CESSVQFWDLRSMGKTNSIEHAH--VRNVDYDTK  219 (346)
Q Consensus       159 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----------------~d~~i~i~d~~~~~~~~~~~~~~--v~~~~~~~~  219 (346)
                      .............+.+++.++|...++..                 ..|.|..+|.  ++ ...+..+-  .+.++|+|+
T Consensus       155 ~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~-~~~~~~~l~~pNGia~spD  231 (355)
T 3sre_A          155 HLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND-VRVVAEGFDFANGINISPD  231 (355)
T ss_dssp             EEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC-CEEEEEEESSEEEEEECTT
T ss_pred             EEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce-EEEeecCCcccCcceECCC
Confidence            33322222344678999999888666543                 1245555554  33 22222222  899999999


Q ss_pred             CCcEEEEecCCCeEEEEEcccCCcc--eeeecCCCcceEEEEeCC-CCCcEEEEecCC
Q 019059          220 KKHLLVTAADESGIHLWDLRMLKAP--IQELPGHTHWTWAVCCNP-EYDGFILSAGTD  274 (346)
Q Consensus       220 ~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~v~~v~~~~-~~~~~l~s~~~d  274 (346)
                      ++.++++-+..+.|..|++...+..  .+.+ ......-.+++.+ +| .+.+++..+
T Consensus       232 g~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G-~lwva~~~~  287 (355)
T 3sre_A          232 GKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTG-DLWVGCHPN  287 (355)
T ss_dssp             SSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTC-CEEEEEESC
T ss_pred             CCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCC-cEEEEecCC
Confidence            9866777677789999998743321  1233 2245567788888 58 666655433

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.09  E-value=0.0027  Score=57.58  Aligned_cols=225  Identities=10%  Similarity=-0.030  Sum_probs=129.3

Q ss_pred             CCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccC
Q 019059           41 ENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV  120 (346)
Q Consensus        41 ~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~  120 (346)
                      .+.|..+++.....  ........-..+.+++|++.+..|+.+   .-..+.|..++++.        .......+...-
T Consensus        17 ~~~I~~i~~~~~~~--~~~~~~~~~~~~~~ld~~~~~~~ly~s---D~~~~~I~r~~~~g--------~~~~~~v~~~~~   83 (619)
T 3s94_A           17 RRDLRLVDATNGKE--NATIVVGGLEDAAAVDFVFSHGLIYWS---DVSEEAIKRTEFNK--------TESVQNVVVSGL   83 (619)
T ss_dssp             SSBEEEECCC-----------CBCCSCEEEEEEETTTTEEEEE---ETTTTEEEEEEC-------------CEEEECSSC
T ss_pred             cccEEEEeCCCCcc--eEEEEEcCCCceEEEEEEeCCCEEEEE---ECCCCeEEEEEccC--------CCceEEEEeCCC
Confidence            45666666654321  111222334567899999988877775   34556788888761        111112222223


Q ss_pred             CceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec--CCeEEEEEcc
Q 019059          121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC--ESSVQFWDLR  198 (346)
Q Consensus       121 ~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~i~d~~  198 (346)
                      .....+++.+.+..++++-...+.|.+.+++... ...+...    ......++++.|.+..|+.+..  .+.|...++.
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~-~~~l~~~----~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d  158 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-RKVLFWQ----ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD  158 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECS----SCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC-EEEEEeC----CCCCCceEEEecCCCeEEEeccCCCCEEEEEECC
Confidence            5678999998777655555668999999987533 2222221    1225678999998777776653  4677777776


Q ss_pred             CCCccceee-ccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCe
Q 019059          199 SMGKTNSIE-HAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDST  276 (346)
Q Consensus       199 ~~~~~~~~~-~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~  276 (346)
                      ......... ... .+.|++++++..++++-...+.|..+|+.... ......+.......|++..+  .++.+-...+.
T Consensus       159 G~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~-~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~~  235 (619)
T 3s94_A          159 GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN-RQAVVKGSLPHPFALTLFED--ILYWTDWSTHS  235 (619)
T ss_dssp             SCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCE-EC---------CCCEEESSS--EEEEECTTTCS
T ss_pred             CCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCc-cEEEEeCCCCCceEEEEeCC--EEEEecCCCCE
Confidence            433322221 112 89999999776566666677889999886422 11111111222345666544  45555556778


Q ss_pred             EEEEecCCCC
Q 019059          277 VNLWLVSTSN  286 (346)
Q Consensus       277 i~iwd~~~~~  286 (346)
                      |...|..++.
T Consensus       236 V~~~d~~tg~  245 (619)
T 3s94_A          236 ILACNKYTGE  245 (619)
T ss_dssp             EEEEESSSCC
T ss_pred             EEEEECCCCc
Confidence            8888887643

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.09  E-value=0.0021  Score=62.51  Aligned_cols=234  Identities=11%  Similarity=0.156  Sum_probs=136.0

Q ss_pred             CCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccC
Q 019059           24 ADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYG  103 (346)
Q Consensus        24 ~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~  103 (346)
                      ..-++.++++-.-..+..+++.++++...+...  +    .+-.--+.-.+|..+.++.-     ...+++|+|++    
T Consensus        30 ~T~eSDkyicvre~~~~~~~vvIidl~~~~~~~--r----rpi~AdsAIMnP~~~iiALr-----ag~~lQiFnl~----   94 (1630)
T 1xi4_A           30 LTMESDKFICIREKVGEQAQVVIIDMNDPSNPI--R----RPISADSAIMNPASKVIALK-----AGKTLQIFNIE----   94 (1630)
T ss_pred             eeeecCceEEEEecCCCCceEEEEECCCCCCcc--c----ccccchhhccCCCcceEEEe-----cCCeEEEeehH----
Confidence            344555666665555666788888888754432  1    12122234568866544442     35699999998    


Q ss_pred             CCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcE
Q 019059          104 QLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNA  183 (346)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  183 (346)
                           ....+..+.- ...|.--.|-.... +.+++  +..|+-|++.....+.+.......-....|..-..+++.+++
T Consensus        95 -----~k~klks~~~-~e~VvfWkWis~~~-l~lVT--~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~  165 (1630)
T 1xi4_A           95 -----MKSKMKAHTM-TDDVTFWKWISLNT-VALVT--DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWL  165 (1630)
T ss_pred             -----Hhhhhccccc-CCCceEEEecCCCe-eEEEc--CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeE
Confidence                 4444444432 45688888877766 34444  689999999764444444333322123467777788888887


Q ss_pred             EEEec-------CCeEEEEEccCCCccceeeccc---eeEEEe--CCCCCcEEEEecC---CCeEEEEEcccC--Ccc--
Q 019059          184 VAATC-------ESSVQFWDLRSMGKTNSIEHAH---VRNVDY--DTKKKHLLVTAAD---ESGIHLWDLRML--KAP--  244 (346)
Q Consensus       184 ~~~~~-------d~~i~i~d~~~~~~~~~~~~~~---v~~~~~--~~~~~~~l~~~~~---dg~i~i~d~~~~--~~~--  244 (346)
                      +..|-       .|.+.+|..+.+..  ....+|   ...+..  .+....+++.+..   .+.++|.++...  +.+  
T Consensus       166 ~l~gi~~~~~~v~G~mQLyS~er~~s--Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f  243 (1630)
T 1xi4_A          166 LLTGISAQQNRVVGAMQLYSVDRKVS--QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF  243 (1630)
T ss_pred             EEEeeccCCCcccceeeeeecccccc--hhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCC
Confidence            76542       47888888775432  122255   111111  1222223333322   268999988643  111  


Q ss_pred             ----eeeecC---CCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          245 ----IQELPG---HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       245 ----~~~~~~---~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                          +..+..   ...-..++..++.. ..+...+.-|.|.+||+.+
T Consensus       244 ~kk~~~~~~~~~~~~Dfpv~~~vs~k~-g~iy~itk~G~~~~~d~~t  289 (1630)
T 1xi4_A          244 PKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLET  289 (1630)
T ss_pred             ccccccccCCcccccCcceEEEecccc-CEEEEEecCceEEEEeccc
Confidence                111111   12223456677777 7888888899999999999

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.09  E-value=0.0009  Score=55.27  Aligned_cols=183  Identities=14%  Similarity=0.183  Sum_probs=112.2

Q ss_pred             CCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecC----CCC--cEEEEe-c--CCeEEEEEcCCCCCCce
Q 019059           88 GESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSS----GRH--DKLVSI-D--EENIFLWSLDCSNKNAQ  158 (346)
Q Consensus        88 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~--~~~~~~-~--d~~i~vwd~~~~~~~~~  158 (346)
                      ...+.+.+||+.          ++.++.+..  +.++.+..-|.    |+.  +++++. .  +++|.+|+++.......
T Consensus        47 ~k~~gL~Vydl~----------G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~  114 (355)
T 3amr_A           47 NKKSGLVVYSLD----------GKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (355)
T ss_dssp             ETTTEEEEEETT----------SCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEE
T ss_pred             cCCCCEEEEcCC----------CcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCcee
Confidence            356789999995          567776643  56777776663    221  344553 3  58999998853222222


Q ss_pred             eeec---ccCCCceeeEEEEe--CCCCC--cEEEEecCCeEEEEEcc-------CCCccceeeccc-eeEEEeCCCCCcE
Q 019059          159 VQSK---QSSGMLHYLSGGAW--DPHDV--NAVAATCESSVQFWDLR-------SMGKTNSIEHAH-VRNVDYDTKKKHL  223 (346)
Q Consensus       159 ~~~~---~~~~~~~~v~~~~~--~~~~~--~l~~~~~d~~i~i~d~~-------~~~~~~~~~~~~-v~~~~~~~~~~~~  223 (346)
                      ....   ........++.+++  +|...  ++++...+|.+..|++.       +.+.++++..+. +..++..+... .
T Consensus       115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g-~  193 (355)
T 3amr_A          115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYG-R  193 (355)
T ss_dssp             ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTT-E
T ss_pred             eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCC-e
Confidence            1110   00011136777887  77543  57777788999999983       234566666555 88999998777 7


Q ss_pred             EEEecCCCeEEEEEcccC----Ccceeeec-CC-CcceEEEEe--CCCCCcEEEEec-CCCeEEEEecC
Q 019059          224 LVTAADESGIHLWDLRML----KAPIQELP-GH-THWTWAVCC--NPEYDGFILSAG-TDSTVNLWLVS  283 (346)
Q Consensus       224 l~~~~~dg~i~i~d~~~~----~~~~~~~~-~~-~~~v~~v~~--~~~~~~~l~s~~-~d~~i~iwd~~  283 (346)
                      |+.+-++.-|..+|.+..    ...+..+. ++ ...+..|++  .+++..+|++++ .++++.+||.+
T Consensus       194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            888888876777775421    12333321 22 246777877  566532454444 67899999997

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.09  E-value=0.00068  Score=61.08  Aligned_cols=167  Identities=10%  Similarity=0.031  Sum_probs=96.5

Q ss_pred             CeEEEEEcCCCCCCceeeecccCC-----CceeeEEEEeC-CCCC---cEEEEecCCeEEEEEccCCCccceeeccc---
Q 019059          143 ENIFLWSLDCSNKNAQVQSKQSSG-----MLHYLSGGAWD-PHDV---NAVAATCESSVQFWDLRSMGKTNSIEHAH---  210 (346)
Q Consensus       143 ~~i~vwd~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~-~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---  210 (346)
                      +.|.-+|..+++............     ...++. +... .+++   .++.++.+|.++++|.++++.+..+....   
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~  369 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT  369 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence            589999999888766654432110     111221 1221 3564   57778889999999999988664433210   


Q ss_pred             --------------------------------------------eeEEEeCCCCCcEEEEec------------------
Q 019059          211 --------------------------------------------VRNVDYDTKKKHLLVTAA------------------  228 (346)
Q Consensus       211 --------------------------------------------v~~~~~~~~~~~~l~~~~------------------  228 (346)
                                                                  -..++++|+.. ++++..                  
T Consensus       370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g-~~yv~~~~~~~~~~~~~~~~~~g~  448 (582)
T 1flg_A          370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTG-LFYVPANHWKEDYWTEEVSYTKGS  448 (582)
T ss_dssp             SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTC-CEEEEEECEEEEEEECCCCCCTTS
T ss_pred             ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCC-EEEEechhcceeeecccccccCCC
Confidence                                                        11346666665 343321                  


Q ss_pred             ---------------CCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcc
Q 019059          229 ---------------DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSE  293 (346)
Q Consensus       229 ---------------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  293 (346)
                                     .+|.|..||+.+.+ .+-+.... .++..-.....+ .+++.++.|+.++.||.++         
T Consensus       449 ~~~g~~~~~~p~~~~~~G~l~A~D~~tG~-~~W~~~~~-~~~~~g~~~tag-glvf~g~~dg~l~A~D~~t---------  516 (582)
T 1flg_A          449 AYLGMGFRIKRMYDDHVGSLRAMDPVSGK-VVWEHKEH-LPLWAGVLATAG-NLVFTGTGDGYFKAFDAKS---------  516 (582)
T ss_dssp             CCCCEEEEEEESCSSCSEEEEEECTTTCC-EEEEEEES-SCCCSCCEEETT-TEEEEECTTSEEEEEETTT---------
T ss_pred             ceeccceeecCCCCCCcceEEEEECCCCC-EEEEecCC-CCCcccceEeCC-CEEEEECCCCcEEEEECCC---------
Confidence                           25788899988743 44333321 122211111234 5777899999999999998         


Q ss_pred             cccCCcccccccccccccccccee-eEEEeCCCCCcEEEEe
Q 019059          294 SLVESPNQRANSLLNSYSDYEDSV-YGLAWSSREPWIFASL  333 (346)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~s~  333 (346)
                                ++.+-.+......+ .-+.|..+|+.++++.
T Consensus       517 ----------G~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~  547 (582)
T 1flg_A          517 ----------GKELWKFQTGSGIVSPPITWEQDGEQYLGVT  547 (582)
T ss_dssp             ----------CCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             ----------CCEEEEecCCCCcccCceEEEECCEEEEEEE
Confidence                      78777665433211 2256666776444433

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.04  E-value=0.0038  Score=51.82  Aligned_cols=233  Identities=12%  Similarity=0.061  Sum_probs=118.2

Q ss_pred             ccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCe
Q 019059           65 PNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEEN  144 (346)
Q Consensus        65 ~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~  144 (346)
                      ...+.++.|.| + .+.++    +..+.|..  ..+.     ..+.+.+.....+...+..+.+.+++.  +++.+.++.
T Consensus        79 ~~~~~~i~~~~-~-~~~~~----g~~g~i~~--S~Dg-----G~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~g~  143 (327)
T 2xbg_A           79 DYRFNSVSFQG-N-EGWIV----GEPPIMLH--TTDG-----GQSWSQIPLDPKLPGSPRLIKALGNGS--AEMITNVGA  143 (327)
T ss_dssp             CCEEEEEEEET-T-EEEEE----EETTEEEE--ESST-----TSSCEECCCCTTCSSCEEEEEEEETTE--EEEEETTCC
T ss_pred             CccEEEEEecC-C-eEEEE----ECCCeEEE--ECCC-----CCCceECccccCCCCCeEEEEEECCCC--EEEEeCCcc
Confidence            34688899876 3 34443    24444332  2210     112333222112334567788777665  455555665


Q ss_pred             EEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEE-EEccCCCccceeec--cc-eeEEEeCCCC
Q 019059          145 IFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQF-WDLRSMGKTNSIEH--AH-VRNVDYDTKK  220 (346)
Q Consensus       145 i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i-~d~~~~~~~~~~~~--~~-v~~~~~~~~~  220 (346)
                      |  |....+..........   ....+..+.+.|++..++++ .++.+.. .|- .++.-..+..  .. +..+++.+++
T Consensus       144 v--~~S~DgG~tW~~~~~~---~~~~~~~~~~~~~~~~~~~g-~~G~~~~S~d~-gG~tW~~~~~~~~~~~~~~~~~~~g  216 (327)
T 2xbg_A          144 I--YRTKDSGKNWQALVQE---AIGVMRNLNRSPSGEYVAVS-SRGSFYSTWEP-GQTAWEPHNRTTSRRLHNMGFTPDG  216 (327)
T ss_dssp             E--EEESSTTSSEEEEECS---CCCCEEEEEECTTSCEEEEE-TTSSEEEEECT-TCSSCEEEECCSSSCEEEEEECTTS
T ss_pred             E--EEEcCCCCCCEEeecC---CCcceEEEEEcCCCcEEEEE-CCCcEEEEeCC-CCCceeECCCCCCCccceeEECCCC
Confidence            4  3333323233333322   23367889999987655544 4555444 332 1222222221  22 8889999988


Q ss_pred             CcEEEEecCCCeEEEEEcccCCcceeeec----CCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCccccc
Q 019059          221 KHLLVTAADESGIHLWDLRMLKAPIQELP----GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLV  296 (346)
Q Consensus       221 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  296 (346)
                      . +++ ++.+|.+++.+... ......+.    .+...+..+.+.+++ .+++++. ++.| .+....+           
T Consensus       217 ~-~~~-~~~~G~~~~s~~D~-G~tW~~~~~~~~~~~~~~~~v~~~~~~-~~~~~g~-~g~i-~~S~DgG-----------  279 (327)
T 2xbg_A          217 R-LWM-IVNGGKIAFSDPDN-SENWGELLSPLRRNSVGFLDLAYRTPN-EVWLAGG-AGAL-LCSQDGG-----------  279 (327)
T ss_dssp             C-EEE-EETTTEEEEEETTE-EEEECCCBCTTSSCCSCEEEEEESSSS-CEEEEES-TTCE-EEESSTT-----------
T ss_pred             C-EEE-EeCCceEEEecCCC-CCeeEeccCCcccCCcceEEEEecCCC-EEEEEeC-CCeE-EEeCCCC-----------
Confidence            6 554 44568877764221 11111111    122458889999877 6666554 6666 3333320           


Q ss_pred             CCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEee
Q 019059          297 ESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHM  343 (346)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~  343 (346)
                           .....+.........+.++.|.+++  .+++++.+|.|.-++
T Consensus       280 -----~tW~~~~~~~~~~~~~~~v~~~~~~--~~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          280 -----QTWQQDVDVKKVPSNFYKILFFSPD--QGFILGQKGILLRYV  319 (327)
T ss_dssp             -----SSCEECGGGTTSSSCCCEEEEEETT--EEEEECSTTEEEEEC
T ss_pred             -----cccEEcCccCCCCCCeEEEEEECCC--ceEEEcCCceEEEEc
Confidence                 0022222111223457888887554  456677788876654

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.96  E-value=0.003  Score=56.97  Aligned_cols=63  Identities=10%  Similarity=-0.059  Sum_probs=38.8

Q ss_pred             CeEEEEEcCCCCCCceeeecccCC-----CceeeEEEEeC-CCC---CcEEEEecCCeEEEEEccCCCcccee
Q 019059          143 ENIFLWSLDCSNKNAQVQSKQSSG-----MLHYLSGGAWD-PHD---VNAVAATCESSVQFWDLRSMGKTNSI  206 (346)
Q Consensus       143 ~~i~vwd~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~-~~~---~~l~~~~~d~~i~i~d~~~~~~~~~~  206 (346)
                      +.|..+|.++++............     ...++. +... .++   ..++.++.+|.++++|.++++.+...
T Consensus       278 ~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~  349 (599)
T 1w6s_A          278 MTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSAN  349 (599)
T ss_dssp             SEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             ceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecc
Confidence            478999999887666555432111     011111 2221 456   35666778999999999999866443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.94  E-value=0.0024  Score=52.72  Aligned_cols=187  Identities=12%  Similarity=0.166  Sum_probs=111.1

Q ss_pred             CcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCC----CCCc--EEEEe-c---CCeEEEEEcc--CCC
Q 019059          134 HDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDP----HDVN--AVAAT-C---ESSVQFWDLR--SMG  201 (346)
Q Consensus       134 ~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~--l~~~~-~---d~~i~i~d~~--~~~  201 (346)
                      .+++++...+-+.+||+ +++....+..    +   .++.+..-|    .++.  ++.++ .   +++|.+|++.  ++ 
T Consensus        41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~----g---~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-  111 (355)
T 3amr_A           41 SKLITTNKKSGLVVYSL-DGKMLHSYNT----G---KLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-  111 (355)
T ss_dssp             CEEEEEETTTEEEEEET-TSCEEEEECC----S---CEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-
T ss_pred             cEEEEEcCCCCEEEEcC-CCcEEEEccC----C---CcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-
Confidence            34666677889999999 4554433321    1   344444433    2222  33443 3   5789999773  33 


Q ss_pred             ccceee-------cc-c-eeEEEe--CCC-CCcEEEEecCCCeEEEEEcccC------CcceeeecCCCcceEEEEeCCC
Q 019059          202 KTNSIE-------HA-H-VRNVDY--DTK-KKHLLVTAADESGIHLWDLRML------KAPIQELPGHTHWTWAVCCNPE  263 (346)
Q Consensus       202 ~~~~~~-------~~-~-v~~~~~--~~~-~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~~v~~v~~~~~  263 (346)
                      .+..+.       .. . +..+++  +|. +..++++...+|.+..|++...      .+.++++.. ...+..+...+.
T Consensus       112 ~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~  190 (355)
T 3amr_A          112 TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDE  190 (355)
T ss_dssp             CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETT
T ss_pred             ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCC
Confidence            233331       11 2 777777  774 4445777778899999988431      235666664 456778888888


Q ss_pred             CCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccc-cc-cceeeEEEe--CCCCC-cEEEEeecCCe
Q 019059          264 YDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYS-DY-EDSVYGLAW--SSREP-WIFASLSYDGR  338 (346)
Q Consensus       264 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~v~~~~~--~~~~~-~~l~s~~~d~~  338 (346)
                      . ..|+.+-+|.-|..++.+....              ...+.+..+. ++ ...+..|++  .++++ ++|+++-.+.+
T Consensus       191 ~-g~Lyv~eEd~GIw~~da~p~~~--------------~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s  255 (355)
T 3amr_A          191 Y-GRLYIAEEDEAIWKFSAEPDGG--------------SNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSS  255 (355)
T ss_dssp             T-TEEEEEETTTEEEEEECSTTSC--------------SCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTE
T ss_pred             C-CeEEEecccceEEEEeCCcCCC--------------CCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCE
Confidence            7 7899999886665555442000              0023333331 22 234777777  45555 46666667889


Q ss_pred             EEEeeec
Q 019059          339 VRNHMLE  345 (346)
Q Consensus       339 v~vw~~~  345 (346)
                      +.+|+.+
T Consensus       256 ~~Vydr~  262 (355)
T 3amr_A          256 YAIYDRQ  262 (355)
T ss_dssp             EEEEESS
T ss_pred             EEEEECC
Confidence            9999875

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.94  E-value=0.0065  Score=50.99  Aligned_cols=149  Identities=11%  Similarity=0.018  Sum_probs=79.8

Q ss_pred             cceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeee----eeccCCceEEEEeecC---CCCcEEE
Q 019059           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAA----LDAHVGKINCVLWWSS---GRHDKLV  138 (346)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~---~~~~~~~  138 (346)
                      .....|+|.|+++.++++    ...+.|.+++.+..       ..+.+..    ..........++++|+   +..++++
T Consensus        18 ~~P~~i~~~pdG~~l~V~----e~~G~i~~~~~~g~-------~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~   86 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLIT----LRGGELRHWQAGKG-------LSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLS   86 (353)
T ss_dssp             SSEEEEEECSTTCCEEEE----ETTTEEEEEETTTE-------ECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEE
T ss_pred             CCcEEEEEcCCCCEEEEE----eCCceEEEEeCCCc-------eeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEE
Confidence            456789999999844443    24678888874310       0011111    1122345689999996   5544444


Q ss_pred             Eec-------CCeEEEEEcCCCCC----Cceeeeccc--CCCceeeEEEEeCCCCCcEEEEec-------------CCeE
Q 019059          139 SID-------EENIFLWSLDCSNK----NAQVQSKQS--SGMLHYLSGGAWDPHDVNAVAATC-------------ESSV  192 (346)
Q Consensus       139 ~~~-------d~~i~vwd~~~~~~----~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~-------------d~~i  192 (346)
                      -..       ...|..+++.....    ...+.....  .........++|.|++.+.++.+.             .+.|
T Consensus        87 ~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I  166 (353)
T 2g8s_A           87 YSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKL  166 (353)
T ss_dssp             EEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEE
T ss_pred             EeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEE
Confidence            332       23566677653311    111111111  011123467999999965555433             2467


Q ss_pred             EEEEccCCC------------ccceeeccc--eeEEEeCC-CCCcEEEE
Q 019059          193 QFWDLRSMG------------KTNSIEHAH--VRNVDYDT-KKKHLLVT  226 (346)
Q Consensus       193 ~i~d~~~~~------------~~~~~~~~~--v~~~~~~~-~~~~~l~~  226 (346)
                      .-+|....-            ....+..++  ...++|+| ++. ++++
T Consensus       167 ~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~-l~~~  214 (353)
T 2g8s_A          167 VRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNA-LWLN  214 (353)
T ss_dssp             EEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTE-EEEE
T ss_pred             EEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCC-EEEE
Confidence            777765321            223333344  89999999 564 5544

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.83  E-value=0.0066  Score=49.71  Aligned_cols=159  Identities=10%  Similarity=0.021  Sum_probs=99.5

Q ss_pred             eEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeec----c--CCceEEEEe---ecCCCCcEEE
Q 019059           68 IWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA----H--VGKINCVLW---WSSGRHDKLV  138 (346)
Q Consensus        68 v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~----~--~~~i~~~~~---~~~~~~~~~~  138 (346)
                      -.+++|.+....+..+   .-..+.|..|+...       .....+ .+..    .  ...+..+.|   .|+++ ++++
T Consensus        15 PE~~~wd~~~g~~~vs---~l~~g~V~~~~~~~-------~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~gr-L~vv   82 (334)
T 2p9w_A           15 PEDTIYDRTRQVFYQS---NLYKGRIEVYNPKT-------QSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKR-LFAV   82 (334)
T ss_dssp             CSCEEEETTTTEEEEE---ETTTTEEEEECTTT-------CCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCE-EEEE
T ss_pred             CcCccCcCCCCEEEEE---eccCCEEEEEcCCC-------CeEEEE-ecCCccccCCCcceeeEEEEeccCCCCc-EEEE
Confidence            3468998866666664   23578999998761       111222 2321    1  113578999   57765 4443


Q ss_pred             Ee-------------cCCeEEEEEcC---CCCCCceeeecccC-C-------CceeeEEEEeCCCCCcEEEEecC-CeEE
Q 019059          139 SI-------------DEENIFLWSLD---CSNKNAQVQSKQSS-G-------MLHYLSGGAWDPHDVNAVAATCE-SSVQ  193 (346)
Q Consensus       139 ~~-------------~d~~i~vwd~~---~~~~~~~~~~~~~~-~-------~~~~v~~~~~~~~~~~l~~~~~d-~~i~  193 (346)
                      ..             .+..|..+|+.   +++........... +       .......++..++|+..++.+.. +.|.
T Consensus        83 ~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~  162 (334)
T 2p9w_A           83 MKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIA  162 (334)
T ss_dssp             EEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEE
T ss_pred             EcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEE
Confidence            32             15789999998   66654443321100 0       11358899999999988888877 7777


Q ss_pred             EEEccCCCccceee--c--cc----eeEEEeCCCCCcEEEEecCCCeEEEEEccc
Q 019059          194 FWDLRSMGKTNSIE--H--AH----VRNVDYDTKKKHLLVTAADESGIHLWDLRM  240 (346)
Q Consensus       194 i~d~~~~~~~~~~~--~--~~----v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  240 (346)
                      ..+.... ....+.  .  ..    .+.|+++|++. +|++....+.+..+|++.
T Consensus       163 rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~-~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          163 RVSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSN-KLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             EECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTT-EEEEESSSSSEEEEECSS
T ss_pred             EEeCCCC-EEeeeeecCCCcccccCcceEEEeCCCC-EEEEEcCCCeEEEEcCCC
Confidence            7776643 222211  1  11    77999999998 555554599999999885

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.83  E-value=0.0038  Score=56.22  Aligned_cols=56  Identities=16%  Similarity=-0.032  Sum_probs=36.9

Q ss_pred             CeEEEEEccCCCccceeeccc--------eeE---EEeC-CCCC--cEEEEecCCCeEEEEEcccCCccee
Q 019059          190 SSVQFWDLRSMGKTNSIEHAH--------VRN---VDYD-TKKK--HLLVTAADESGIHLWDLRMLKAPIQ  246 (346)
Q Consensus       190 ~~i~i~d~~~~~~~~~~~~~~--------v~~---~~~~-~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~  246 (346)
                      +.|..+|.++++.+-.++..+        +..   +... .+|+  .+++.++.+|.++++|.++ .+++.
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~lw  360 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSN-GKLQN  360 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTT-CCEEE
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCC-CCEec
Confidence            589999999999877665321        111   1111 3553  2678889999999999887 43443

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.79  E-value=0.0042  Score=51.83  Aligned_cols=155  Identities=10%  Similarity=0.070  Sum_probs=88.3

Q ss_pred             eEEEEeecCCCCcEEEEe-------------cCCeEEEEEcCCCCC-Cceeeecc--cCCCceeeEEEEeCC--CCC-cE
Q 019059          123 INCVLWWSSGRHDKLVSI-------------DEENIFLWSLDCSNK-NAQVQSKQ--SSGMLHYLSGGAWDP--HDV-NA  183 (346)
Q Consensus       123 i~~~~~~~~~~~~~~~~~-------------~d~~i~vwd~~~~~~-~~~~~~~~--~~~~~~~v~~~~~~~--~~~-~l  183 (346)
                      .-.+...|+|.  +++++             .+|.|.++|..+... ...+....  .....-...++.+.+  ++. +|
T Consensus        52 ~EDi~~~~~G~--~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L  129 (355)
T 3sre_A           52 SEDLEILPNGL--AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL  129 (355)
T ss_dssp             CCEEEECTTSE--EEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred             cceeEEcCCCe--EEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence            44566777765  44443             589999999874322 22222211  111122456666654  343 35


Q ss_pred             EEEe-c--CCeEEEEEccCCCccc----eeeccc---eeEEEeCCCCCcEEEEec-----------------CCCeEEEE
Q 019059          184 VAAT-C--ESSVQFWDLRSMGKTN----SIEHAH---VRNVDYDTKKKHLLVTAA-----------------DESGIHLW  236 (346)
Q Consensus       184 ~~~~-~--d~~i~i~d~~~~~~~~----~~~~~~---v~~~~~~~~~~~~l~~~~-----------------~dg~i~i~  236 (346)
                      +++. .  +..+.+|++.......    .+....   .+.+++.++|. ++++..                 ..|.|..+
T Consensus       130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~  208 (355)
T 3sre_A          130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYY  208 (355)
T ss_dssp             EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCCCEEEEEE
T ss_pred             EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCCccEEEEE
Confidence            5543 2  5688888877543222    222111   89999999997 566543                 12455555


Q ss_pred             EcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          237 DLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       237 d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      |..    .++.+...-...+.++|+|++..+.++-+..+.|..|++..
T Consensus       209 d~~----~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          209 SPN----DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             CTT----CCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             ECC----eEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence            542    23333323345689999999933444555678999999874

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.64  E-value=0.013  Score=49.15  Aligned_cols=100  Identities=15%  Similarity=0.057  Sum_probs=60.7

Q ss_pred             ceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeec-ccCCCceeeEEEEeCCC---CCcEEEEec-C-----Ce
Q 019059          122 KINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK-QSSGMLHYLSGGAWDPH---DVNAVAATC-E-----SS  191 (346)
Q Consensus       122 ~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~---~~~l~~~~~-d-----~~  191 (346)
                      ....++|.|+|+  ++++...+.|.+++ . +. ...+... ...........++++|+   +..|+++.. .     ..
T Consensus        32 ~P~~ia~~pdG~--l~V~e~~g~I~~i~-~-g~-~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~  106 (352)
T 2ism_A           32 VPWALAFLPDGG--MLIAERPGRIRLFR-E-GR-LSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ  106 (352)
T ss_dssp             CEEEEEECTTSC--EEEEETTTEEEEEE-T-TE-EEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred             CceEEEEcCCCe--EEEEeCCCeEEEEE-C-CC-ccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence            457999999998  55555569999998 2 22 1111111 01111336789999998   556665543 2     67


Q ss_pred             EEEEEccCCC-----ccc-eee----ccc-eeEEEeCCCCCcEEEEe
Q 019059          192 VQFWDLRSMG-----KTN-SIE----HAH-VRNVDYDTKKKHLLVTA  227 (346)
Q Consensus       192 i~i~d~~~~~-----~~~-~~~----~~~-v~~~~~~~~~~~~l~~~  227 (346)
                      |..++...+.     .+. .+.    ..| ...++|.|+|. ++++.
T Consensus       107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~  152 (352)
T 2ism_A          107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTT  152 (352)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEEC
T ss_pred             EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEE
Confidence            8888876432     111 122    123 77899999996 66664

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.59  E-value=0.011  Score=50.14  Aligned_cols=149  Identities=9%  Similarity=0.108  Sum_probs=92.0

Q ss_pred             CCCeEEEEEecCCCCeEEEeeeec--cccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCC----ccceee
Q 019059           40 EENEVHLLRLSSGGTELICEGLFS--HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNS----PQLERI  113 (346)
Q Consensus        40 ~~~~i~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~----~~~~~~  113 (346)
                      .++.++...+.++....... ...  --+.|..+..+|+|.+|+..     .+..|.|-.++........    ...+ .
T Consensus        39 ~~n~iR~~~i~~~~~Yk~L~-~~~~i~f~~i~qlvlSpsG~lLAl~-----g~~~V~Vv~LP~~~~~~~~~~~~~~~q-~  111 (452)
T 3pbp_A           39 QDNIIRWYNVLTDSLYHSLN-FSRHLVLDDTFHVISSTSGDLLCLF-----NDNEIFVMEVPWGYSNVEDVSIQDAFQ-I  111 (452)
T ss_dssp             ETTEEEEEETTTCSSCEEEE-CTTTCCCCTTCEEEECTTSSEEEEE-----CSSEEEEEECCTTCSCCCCHHHHHTTE-E
T ss_pred             ECCEEEEEECCCCCcceEEe-cCcccccCceeEEEECCCCCEEEEe-----cCCeEEEEEecCccccCcccccccccc-e
Confidence            46788888888654322211 111  12367889999999988886     5568999998843222111    1111 1


Q ss_pred             eeeec------cCCceEEEEeecCCCC--cEEEEecCCeEEEEEcCCCCCCceeeecc-----cCCCceeeEEEEeCCCC
Q 019059          114 AALDA------HVGKINCVLWWSSGRH--DKLVSIDEENIFLWSLDCSNKNAQVQSKQ-----SSGMLHYLSGGAWDPHD  180 (346)
Q Consensus       114 ~~~~~------~~~~i~~~~~~~~~~~--~~~~~~~d~~i~vwd~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~  180 (346)
                      +.+.-      ...+|..+.|+|-+..  .+++-..|+.|++||+...........+.     .......+.+++|.+++
T Consensus       112 ~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~  191 (452)
T 3pbp_A          112 FHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDG  191 (452)
T ss_dssp             EEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTS
T ss_pred             eEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCC
Confidence            23322      2567999999997542  35555679999999998633222211111     11223578899999988


Q ss_pred             CcEEEEe--cCCeEEEE
Q 019059          181 VNAVAAT--CESSVQFW  195 (346)
Q Consensus       181 ~~l~~~~--~d~~i~i~  195 (346)
                      -.|.+.+  .+|.|+-.
T Consensus       192 lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          192 LTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             SCEEEEECTTSCEEEEE
T ss_pred             cEEEEEecCCCCCEEEE
Confidence            7788865  67888754

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.58  E-value=0.025  Score=47.40  Aligned_cols=102  Identities=18%  Similarity=0.068  Sum_probs=61.1

Q ss_pred             CceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecc-cCCCceeeEEEEeCCC---CCcEEEEec----C---
Q 019059          121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQ-SSGMLHYLSGGAWDPH---DVNAVAATC----E---  189 (346)
Q Consensus       121 ~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~---~~~l~~~~~----d---  189 (346)
                      .....++|.|+|+  ++++..++.|++++. .+.  ..+.... ..........++++|+   +..|+++..    +   
T Consensus        29 ~~P~~ia~~pdG~--l~V~e~~g~I~~~d~-~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~  103 (354)
T 3a9g_A           29 EVPWSIAPLGGGR--YLVTERPGRLVLISP-SGK--KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI  103 (354)
T ss_dssp             SCEEEEEEEETTE--EEEEETTTEEEEECS-SCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred             CCCeEEEEcCCCe--EEEEeCCCEEEEEeC-CCc--eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence            4568999999998  566655699999873 232  1111110 0111235789999997   555655543    2   


Q ss_pred             -CeEEEEEccCCC-------cc-ceee--ccc-eeEEEeCCCCCcEEEEec
Q 019059          190 -SSVQFWDLRSMG-------KT-NSIE--HAH-VRNVDYDTKKKHLLVTAA  228 (346)
Q Consensus       190 -~~i~i~d~~~~~-------~~-~~~~--~~~-v~~~~~~~~~~~~l~~~~  228 (346)
                       ..|..|+.....       .+ ..+.  ..| ...|+|.|+|. ++++.+
T Consensus       104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G  153 (354)
T 3a9g_A          104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTG  153 (354)
T ss_dssp             EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECC
T ss_pred             ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEEC
Confidence             567778776541       11 1122  123 67899999997 666643

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.58  E-value=0.0062  Score=46.56  Aligned_cols=101  Identities=8%  Similarity=-0.064  Sum_probs=62.6

Q ss_pred             eeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---------eeEEEeCCCCCcEEEEecCCCeEEEEEccc
Q 019059          170 YLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---------VRNVDYDTKKKHLLVTAADESGIHLWDLRM  240 (346)
Q Consensus       170 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---------v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  240 (346)
                      .+..++|+|++. |.++ .+|.++-.+..+.....-+..+.         -..+.|.|++. +.++  .||.|+-++..+
T Consensus        42 ~~~~laf~P~G~-LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~-LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           42 NFKFLFLSPGGE-LYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGY-LYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TCSEEEECTTSC-EEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSC-EEEE--ETTEEEEESCCC
T ss_pred             cceeEEECCCcc-EEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCC-EEEe--CCCEEEEeCCCc
Confidence            677999999777 4444 78888777765533222111111         38899999997 6555  569998777533


Q ss_pred             CCcc-e----eee-cCCCcceEEEEeCCCCCcEEEEecCCCeEE
Q 019059          241 LKAP-I----QEL-PGHTHWTWAVCCNPEYDGFILSAGTDSTVN  278 (346)
Q Consensus       241 ~~~~-~----~~~-~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~  278 (346)
                      .... .    ..+ ..-=..+..|.+.|+| .+.+..  |+.++
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G-~Lyav~--dg~ly  157 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNG-YLYAVH--GQQFY  157 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTS-CEEEEE--TTEEE
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCc-eEEEEe--CCcEE
Confidence            1210 0    111 1111467999999999 655555  77743

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.50  E-value=0.035  Score=47.14  Aligned_cols=236  Identities=12%  Similarity=0.129  Sum_probs=133.5

Q ss_pred             ceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCce
Q 019059           79 RIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQ  158 (346)
Q Consensus        79 ~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~  158 (346)
                      ..+++....+....|.|-|+..        ...+.+.-..-+    +.-.+|..+  +++--....+.++|+++..+...
T Consensus        36 kyicVrE~~~~~~~vvIiDl~~--------~~~~~rrpi~Ad----sAIMnP~~~--iiALrag~~lQiFnle~K~klks  101 (494)
T 1bpo_A           36 KFICIREKVGEQAQVVIIDMND--------PSNPIRRPISAD----SAIMNPASK--VIALKAGKTLQIFNIEMKSKMKA  101 (494)
T ss_dssp             TEEEEEECCTTCCEEEEEETTS--------TTSCEEEECCCS----EEEECSSSS--CEEEEETTEEEEEETTTTEEEEE
T ss_pred             ceEEEEecCCCCCeEEEEECCC--------CCcceecccccc----eeeeCCCCc--EEEEecCCeEEEEchHHhhhhcc
Confidence            3444443344555788889873        112222111222    334677776  44443378999999997654444


Q ss_pred             eeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCC-ccceeeccc------eeEEEeCCCCCcEEEEec---
Q 019059          159 VQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG-KTNSIEHAH------VRNVDYDTKKKHLLVTAA---  228 (346)
Q Consensus       159 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~------v~~~~~~~~~~~~l~~~~---  228 (346)
                      ....+      .|.-=.|-. .+.|+.. .+..|+-|++.... +.+.+....      |..-..+++.++++++|-   
T Consensus       102 ~~~~e------~VvfWkWis-~~~l~lV-T~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~  173 (494)
T 1bpo_A          102 HTMTD------DVTFWKWIS-LNTVALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQ  173 (494)
T ss_dssp             EECSS------CCCEEEEEE-TTEEEEE-CSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEE
T ss_pred             eecCC------CceEEEecC-CCeEEEE-cCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeeccc
Confidence            33322      455556653 2344444 36789999997543 444444211      778888999986666554   


Q ss_pred             ---CCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCC--CcEEEEecCC---CeEEEEecCCCCCCCCCcccccCCcc
Q 019059          229 ---DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEY--DGFILSAGTD---STVNLWLVSTSNHDELPSESLVESPN  300 (346)
Q Consensus       229 ---~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~--~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~  300 (346)
                         -.|.+.+|..+.  ..-+.+.+|......+.+..+.  ..+++-+...   +.++|-++........      ..+ 
T Consensus       174 ~~~v~G~mQLYS~er--~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~------~f~-  244 (494)
T 1bpo_A          174 QNRVVGAMQLYSVDR--KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ------PFP-  244 (494)
T ss_dssp             TTEEEEEEEEEESTT--CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCC------CCC-
T ss_pred             CCcccceEEEeeccc--cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCC------Ccc-
Confidence               236788999874  3567788888777666554322  1345544443   6899999865200000      000 


Q ss_pred             ccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeecC
Q 019059          301 QRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLEK  346 (346)
Q Consensus       301 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~~  346 (346)
                      +...+..+.-..-.+-..++..++... ++.....-|.+++||++.
T Consensus       245 kk~vdv~fppe~~~DFPvamqvs~kyg-viyviTK~G~i~lyDleT  289 (494)
T 1bpo_A          245 KKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLET  289 (494)
T ss_dssp             CEEEECCCCTTSTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTT
T ss_pred             ceeeeeeCCcccccCceeEEEecccCC-EEEEEecCceEEEEeccc
Confidence            000000011111123345677887765 777888889999999863

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.39  E-value=0.043  Score=45.58  Aligned_cols=239  Identities=9%  Similarity=0.051  Sum_probs=122.5

Q ss_pred             ccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeee----eccCCceEEEEeecC---CCCcEE
Q 019059           65 PNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL----DAHVGKINCVLWWSS---GRHDKL  137 (346)
Q Consensus        65 ~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~---~~~~~~  137 (346)
                      -...+.|+|.|++..+++-    -..+.|.+++...       .....+..+    .........|+++|+   +..+++
T Consensus        31 L~~P~~ia~~pdG~llVte----r~~G~I~~v~~~~-------g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv   99 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSS----RDEATITRVDAKT-------GRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYA   99 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEE----TTTCEEEEECTTT-------CCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEE
T ss_pred             CCCceEEEEcCCCcEEEEE----ecCCEEEEEECCC-------CcEeeecccCceeecCCCCceeeEeccccccCCEEEE
Confidence            4567899999999766553    2377888886431       111222222    123456789999985   343333


Q ss_pred             EEe--cCCeEEEEEcCCCC----C---CceeeecccCCCceeeEEEEeCCCCCcEEEEec-------------CCeEEEE
Q 019059          138 VSI--DEENIFLWSLDCSN----K---NAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-------------ESSVQFW  195 (346)
Q Consensus       138 ~~~--~d~~i~vwd~~~~~----~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------------d~~i~i~  195 (346)
                      +-+  .++.|.-|.+....    .   ...+.........+....++|.|++.+.++.+.             .|.|.-.
T Consensus       100 ~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi  179 (347)
T 3das_A          100 YFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRM  179 (347)
T ss_dssp             EEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEE
T ss_pred             EEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEE
Confidence            322  35667777765421    1   111111111112224567999999976666542             2556555


Q ss_pred             EccCCC-------ccceeeccc--eeEEEeCCCCCcEEEEec-CCCeEEEEEcccCC-----------------cceeee
Q 019059          196 DLRSMG-------KTNSIEHAH--VRNVDYDTKKKHLLVTAA-DESGIHLWDLRMLK-----------------APIQEL  248 (346)
Q Consensus       196 d~~~~~-------~~~~~~~~~--v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~-----------------~~~~~~  248 (346)
                      +....-       ....+..++  ...++|+|++. ++++-. .++.-.|--++...                 .++..+
T Consensus       180 ~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~-L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~  258 (347)
T 3das_A          180 TPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQR-LFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQW  258 (347)
T ss_dssp             CTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCC-EEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEE
T ss_pred             eCCCCccCCCCCCCCeEEeeCCCCcceEEECCCCC-EEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEec
Confidence            654220       112333355  88999999887 555432 23222222222211                 123333


Q ss_pred             cCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCc
Q 019059          249 PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPW  328 (346)
Q Consensus       249 ~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  328 (346)
                      ..+......++|.. + .++...-..+.|....+....               ...+....+.+....+.+|+..|+|. 
T Consensus       259 ~~~~~ap~G~~~~~-g-~~~~~~l~~~~l~~v~~~~~~---------------~~~~~e~~l~~~~gR~~dv~~~pDG~-  320 (347)
T 3das_A          259 STDEASPSGIAYAE-G-SVWMAGLRGERLWRIPLKGTA---------------AAADPQAFLEGEYGRLRTVAPAGGDK-  320 (347)
T ss_dssp             CTTTCCEEEEEEET-T-EEEEEESTTCSEEEEEEETTE---------------ESSCCEEESTTTSSCEEEEEEEETTE-
T ss_pred             CCCCCCCcceEEEc-C-ceeeccccCCEEEEEEecCCc---------------eecceEEeecCCCCCccEEEECCCCc-
Confidence            32223456666653 4 455544444555555554300               00111122333345689999999997 


Q ss_pred             EEEEe
Q 019059          329 IFASL  333 (346)
Q Consensus       329 ~l~s~  333 (346)
                      ++++.
T Consensus       321 lyv~t  325 (347)
T 3das_A          321 LWLVT  325 (347)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55554

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.39  E-value=0.049  Score=46.17  Aligned_cols=147  Identities=7%  Similarity=-0.002  Sum_probs=93.3

Q ss_pred             eecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCcc----
Q 019059          128 WWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKT----  203 (346)
Q Consensus       128 ~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~----  203 (346)
                      .+.+|..++++  .++.||.-++.... ..+.......-.-..+..+..+|+|.+|+..+ +..|.|..+..+...    
T Consensus        28 ~~~n~t~i~~a--~~n~iR~~~i~~~~-~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~  103 (452)
T 3pbp_A           28 SSQNGTRIVFI--QDNIIRWYNVLTDS-LYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDV  103 (452)
T ss_dssp             EETTTTEEEEE--ETTEEEEEETTTCS-SCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCH
T ss_pred             EEcCCCEEEEE--ECCEEEEEECCCCC-cceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCccc
Confidence            34556643443  36889988887543 23332222100112567799999999888876 557889888843211    


Q ss_pred             --------ceeecc------c--eeEEEeCCCCCc--EEEEecCCCeEEEEEccc-CCcceeeec---------CCCcce
Q 019059          204 --------NSIEHA------H--VRNVDYDTKKKH--LLVTAADESGIHLWDLRM-LKAPIQELP---------GHTHWT  255 (346)
Q Consensus       204 --------~~~~~~------~--v~~~~~~~~~~~--~l~~~~~dg~i~i~d~~~-~~~~~~~~~---------~~~~~v  255 (346)
                              +.+..+      .  |..+.|+|-+..  .|++-..|+.|++||+.. ...|. .+.         .....|
T Consensus       104 ~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev  182 (452)
T 3pbp_A          104 SIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDI  182 (452)
T ss_dssp             HHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCE
T ss_pred             ccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceE
Confidence                    122211      2  999999997653  688888999999999985 22233 332         122568


Q ss_pred             EEEEeCCCCCcEEEEe--cCCCeEEEE
Q 019059          256 WAVCCNPEYDGFILSA--GTDSTVNLW  280 (346)
Q Consensus       256 ~~v~~~~~~~~~l~s~--~~d~~i~iw  280 (346)
                      .+++|.+++ -.|+..  +..|.|+-.
T Consensus       183 ~S~~Fg~~~-lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          183 TDLEFSKDG-LTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             EEEEECTTS-SCEEEEECTTSCEEEEE
T ss_pred             EEEEEcCCC-cEEEEEecCCCCCEEEE
Confidence            899999977 766664  477877654

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.13  E-value=0.059  Score=43.98  Aligned_cols=140  Identities=4%  Similarity=-0.072  Sum_probs=77.4

Q ss_pred             EEeecCCCCcEEEEecC-------------CeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEe----c
Q 019059          126 VLWWSSGRHDKLVSIDE-------------ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT----C  188 (346)
Q Consensus       126 ~~~~~~~~~~~~~~~~d-------------~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~  188 (346)
                      --+++++.++..+...+             ..|+..+++..+  .......        .+..|+++++.|+-..    .
T Consensus        58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~--~~~l~~~--------~~~~~s~~g~~Iy~~~~~~~~  127 (302)
T 3s25_A           58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHG--STVLDPD--------PCIYASLIGNYIYYLHYDTQT  127 (302)
T ss_dssp             EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCC--CEEEECS--------CEEEEEEETTEEEEEEESSSS
T ss_pred             eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCc--ceEeecC--------CccEEEEeCCEEEEEeecCCC
Confidence            45688899877666433             467777776543  2222211        1236677888888776    2


Q ss_pred             CCeEEEEEccCCCccceeeccceeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEE
Q 019059          189 ESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFI  268 (346)
Q Consensus       189 d~~i~i~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l  268 (346)
                      ...|+..++... ....+....+  .+++++++.++.+......|.+.++.. .. .+.+..  .... ..+.|++ .+|
T Consensus       128 ~~~Iy~~~~dGs-~~~~lt~~~~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g-~~-~~~l~~--~~~~-~~~~P~g-~~i  198 (302)
T 3s25_A          128 ATSLYRIRIDGE-EKKKIKNHYL--FTCNTSDRYFYYNNPKNGQLYRYDTAS-QS-EALFYD--CNCY-KPVVLDD-TNV  198 (302)
T ss_dssp             CEEEEEEETTSC-CCEEEESSCC--CCSEEETTEEEEECTTTCCEEEEETTT-TE-EEEEEC--SCEE-EEEEEET-TEE
T ss_pred             CceEEEEECCCC-CeEEEeCCCc--eEeeEECCEEEEEeCCCceEEEEECCC-CC-EEEEeC--CCcc-ceeeecC-CEE
Confidence            445666666643 3333432224  567788886666655567888888764 32 223322  2222 2356888 555


Q ss_pred             EEecC-C-CeEEEEecCC
Q 019059          269 LSAGT-D-STVNLWLVST  284 (346)
Q Consensus       269 ~s~~~-d-~~i~iwd~~~  284 (346)
                      +-... + ..|..-++..
T Consensus       199 y~t~~~~~~~I~~~~ldG  216 (302)
T 3s25_A          199 YYMDVNRDNAIVHVNINN  216 (302)
T ss_dssp             EEEEGGGTTEEEEECSSS
T ss_pred             EEEEcCCCcEEEEEECCC
Confidence            54433 3 2455545543

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.94  E-value=0.028  Score=42.99  Aligned_cols=133  Identities=7%  Similarity=-0.079  Sum_probs=73.4

Q ss_pred             CCcEEEEecCCeEEEEEccCCC------ccceeecc--c-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecC
Q 019059          180 DVNAVAATCESSVQFWDLRSMG------KTNSIEHA--H-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG  250 (346)
Q Consensus       180 ~~~l~~~~~d~~i~i~d~~~~~------~~~~~~~~--~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  250 (346)
                      ...|++..+| +++.=....+.      ....+-..  + +..++|+|++. +.++  .+|.++-.+..+.. . ..+.+
T Consensus         4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~-LYaV--~~G~Ly~~~~~t~~-~-~~W~~   77 (236)
T 1tl2_A            4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGE-LYGV--LNDKIYKGTPPTHD-N-DNWMG   77 (236)
T ss_dssp             CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSC-EEEE--ETTEEEEESCCCST-T-CCHHH
T ss_pred             ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCcc-EEEE--eCCeEEEECCCCCC-c-ccccc
Confidence            4456666666 66665554444      12223321  1 88999999887 6666  66777666654311 1 11111


Q ss_pred             CCcc--------eEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccc--c--ccccceee
Q 019059          251 HTHW--------TWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNS--Y--SDYEDSVY  318 (346)
Q Consensus       251 ~~~~--------v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~v~  318 (346)
                      ....        ..++.|.|+| .+.++  .||.|+-++-.+..                ...-+..  .  ..--..+.
T Consensus        78 s~t~IG~~Gw~~F~a~~fD~~G-~LYav--~dG~iyr~~pP~~~----------------~~~Wl~~a~~vg~~gw~~~~  138 (236)
T 1tl2_A           78 RAKKIGNGGWNQFQFLFFDPNG-YLYAV--SKDKLYKASPPQSD----------------TDNWIARATEVGSGGWSGFK  138 (236)
T ss_dssp             HCEEEECSCGGGCSEEEECTTS-CEEEE--ETTEEEEESCCCST----------------TCCHHHHSEEEECSSGGGEE
T ss_pred             cccEecccccccceEEEECCCC-CEEEe--CCCEEEEeCCCcCC----------------CCceeccccEeccCCCCceE
Confidence            1112        4788999999 66655  56888766643200                0011110  0  11113478


Q ss_pred             EEEeCCCCCcEEEEeecCCeEE
Q 019059          319 GLAWSSREPWIFASLSYDGRVR  340 (346)
Q Consensus       319 ~~~~~~~~~~~l~s~~~d~~v~  340 (346)
                      .|.+.|+|. +.+..  |+.++
T Consensus       139 ~lff~p~G~-Lyav~--dg~ly  157 (236)
T 1tl2_A          139 FLFFHPNGY-LYAVH--GQQFY  157 (236)
T ss_dssp             EEEECTTSC-EEEEE--TTEEE
T ss_pred             EEEECCCce-EEEEe--CCcEE
Confidence            999999996 55444  77653

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.88  E-value=0.14  Score=42.22  Aligned_cols=188  Identities=6%  Similarity=-0.025  Sum_probs=98.2

Q ss_pred             CCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccC
Q 019059          120 VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRS  199 (346)
Q Consensus       120 ~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~  199 (346)
                      ...+.++.|.+.+.  +++.+..+.|. ...+.++ ..+............+..+.+.+  ..+++++..+.|.. ....
T Consensus        35 ~~~~~~v~~~~~~~--~~~~G~~g~i~-~s~DgG~-tW~~~~~~~~~~~~~~~~i~~~~--~~~~~~g~~g~i~~-S~Dg  107 (327)
T 2xbg_A           35 TATILDMSFIDRHH--GWLVGVNATLM-ETRDGGQ-TWEPRTLVLDHSDYRFNSVSFQG--NEGWIVGEPPIMLH-TTDG  107 (327)
T ss_dssp             SSCEEEEEESSSSC--EEEEETTTEEE-EESSTTS-SCEECCCCCSCCCCEEEEEEEET--TEEEEEEETTEEEE-ESST
T ss_pred             CCcEEEEEECCCCc--EEEEcCCCeEE-EeCCCCC-CCeECCCCCCCCCccEEEEEecC--CeEEEEECCCeEEE-ECCC
Confidence            34688998876665  44455667653 3333333 33332211111233688888876  34555566675543 3333


Q ss_pred             CCccceeec-----cceeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeee-cCCCcceEEEEeCCCCCcEEEEecC
Q 019059          200 MGKTNSIEH-----AHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL-PGHTHWTWAVCCNPEYDGFILSAGT  273 (346)
Q Consensus       200 ~~~~~~~~~-----~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~v~~~~~~~~~l~s~~~  273 (346)
                      ++.-..+..     +.+..+.+.+++. +++++. ++.|.  -.......-... ......+..+.+.|++ .+++.+..
T Consensus       108 G~tW~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~-~g~v~--~S~DgG~tW~~~~~~~~~~~~~~~~~~~~-~~~~~g~~  182 (327)
T 2xbg_A          108 GQSWSQIPLDPKLPGSPRLIKALGNGS-AEMITN-VGAIY--RTKDSGKNWQALVQEAIGVMRNLNRSPSG-EYVAVSSR  182 (327)
T ss_dssp             TSSCEECCCCTTCSSCEEEEEEEETTE-EEEEET-TCCEE--EESSTTSSEEEEECSCCCCEEEEEECTTS-CEEEEETT
T ss_pred             CCCceECccccCCCCCeEEEEEECCCC-EEEEeC-CccEE--EEcCCCCCCEEeecCCCcceEEEEEcCCC-cEEEEECC
Confidence            332222111     1266777766665 565554 45442  222112222222 2345578899999988 77777654


Q ss_pred             CCeEEEEec--CCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEe
Q 019059          274 DSTVNLWLV--STSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNH  342 (346)
Q Consensus       274 d~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw  342 (346)
                      .+..+-.|-  .+                   .+.+..  .....+..+.+.+++. ++ .++.+|.+++.
T Consensus       183 G~~~~S~d~gG~t-------------------W~~~~~--~~~~~~~~~~~~~~g~-~~-~~~~~G~~~~s  230 (327)
T 2xbg_A          183 GSFYSTWEPGQTA-------------------WEPHNR--TTSRRLHNMGFTPDGR-LW-MIVNGGKIAFS  230 (327)
T ss_dssp             SSEEEEECTTCSS-------------------CEEEEC--CSSSCEEEEEECTTSC-EE-EEETTTEEEEE
T ss_pred             CcEEEEeCCCCCc-------------------eeECCC--CCCCccceeEECCCCC-EE-EEeCCceEEEe
Confidence            444444443  22                   232221  2334578888888875 44 44456766665

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.85  E-value=0.14  Score=41.57  Aligned_cols=140  Identities=9%  Similarity=0.000  Sum_probs=70.1

Q ss_pred             CcEEEEecC-----CeEEEEEcCCCCCC-ceeeecccCCCceeeEEEEeCCCCCcEEEEecC-----CeEEEEEccCCCc
Q 019059          134 HDKLVSIDE-----ENIFLWSLDCSNKN-AQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE-----SSVQFWDLRSMGK  202 (346)
Q Consensus       134 ~~~~~~~~d-----~~i~vwd~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~  202 (346)
                      .+++.++.+     ..+.+||+.+.... ..... ...........+.+  ++..++.++.+     ..+.+||+.+.+-
T Consensus        64 ~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~-~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W  140 (301)
T 2vpj_A           64 RIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVA-PMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQW  140 (301)
T ss_dssp             EEEEECCBCSSCBCCCEEEEETTCCTTCCCEEEC-CCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred             EEEEEcCCCCCccCceEEEEECCCCCCCeeEECC-CCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeE
Confidence            356666543     46889998765410 12211 11111112222222  45556666532     4688999887653


Q ss_pred             cc--eeeccc--eeEEEeCCCCCcEEEEecCC-----CeEEEEEcccCCcceeeecCC---CcceEEEEeCCCCCcEEEE
Q 019059          203 TN--SIEHAH--VRNVDYDTKKKHLLVTAADE-----SGIHLWDLRMLKAPIQELPGH---THWTWAVCCNPEYDGFILS  270 (346)
Q Consensus       203 ~~--~~~~~~--v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~---~~~v~~v~~~~~~~~~l~s  270 (346)
                      ..  .+..+.  ...+.+  ++. +++.|+.+     ..+.+||+.+.  ....+...   ......+.+  ++ .+++.
T Consensus       141 ~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~--~~-~i~v~  212 (301)
T 2vpj_A          141 SMLGDMQTAREGAGLVVA--SGV-IYCLGGYDGLNILNSVEKYDPHTG--HWTNVTPMATKRSGAGVALL--ND-HIYVV  212 (301)
T ss_dssp             EEEEECSSCCBSCEEEEE--TTE-EEEECCBCSSCBCCCEEEEETTTT--EEEEECCCSSCCBSCEEEEE--TT-EEEEE
T ss_pred             EECCCCCCCcccceEEEE--CCE-EEEECCCCCCcccceEEEEeCCCC--cEEeCCCCCcccccceEEEE--CC-EEEEE
Confidence            22  111111  222222  454 77777654     45888998752  12222211   111122222  45 67777


Q ss_pred             ecCC-----CeEEEEecCC
Q 019059          271 AGTD-----STVNLWLVST  284 (346)
Q Consensus       271 ~~~d-----~~i~iwd~~~  284 (346)
                      |+.+     ..+.+||+.+
T Consensus       213 GG~~~~~~~~~v~~yd~~~  231 (301)
T 2vpj_A          213 GGFDGTAHLSSVEAYNIRT  231 (301)
T ss_dssp             CCBCSSSBCCCEEEEETTT
T ss_pred             eCCCCCcccceEEEEeCCC
Confidence            7764     4688899876

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.76  E-value=0.13  Score=41.70  Aligned_cols=138  Identities=9%  Similarity=-0.017  Sum_probs=67.8

Q ss_pred             CcEEEEecC-----CeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecC-----CeEEEEEccCCCcc
Q 019059          134 HDKLVSIDE-----ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE-----SSVQFWDLRSMGKT  203 (346)
Q Consensus       134 ~~~~~~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~  203 (346)
                      .+++.++.+     ..+.+||..+.+  ...... ..........+.+  ++..++.|+.+     ..+.+||+.+.+-.
T Consensus        63 ~lyv~GG~~~~~~~~~~~~~d~~~~~--W~~~~~-~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~  137 (302)
T 2xn4_A           63 LVFAVGGFNGSLRVRTVDSYDPVKDQ--WTSVAN-MRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWF  137 (302)
T ss_dssp             EEEEESCBCSSSBCCCEEEEETTTTE--EEEECC-CSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEE
T ss_pred             EEEEEeCcCCCccccceEEECCCCCc--eeeCCC-CCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEe
Confidence            356666543     458888887543  111111 1111112222222  45666666644     35778898876522


Q ss_pred             c--eeeccc--eeEEEeCCCCCcEEEEecCC-------CeEEEEEcccCCcceeeec---CCCcceEEEEeCCCCCcEEE
Q 019059          204 N--SIEHAH--VRNVDYDTKKKHLLVTAADE-------SGIHLWDLRMLKAPIQELP---GHTHWTWAVCCNPEYDGFIL  269 (346)
Q Consensus       204 ~--~~~~~~--v~~~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~~~~~~---~~~~~v~~v~~~~~~~~~l~  269 (346)
                      .  .+..+.  ...+.+  ++. +++.|+.+       ..+.+||+.+..  ...+.   ........+.+  ++ .+++
T Consensus       138 ~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~--~~-~iyv  209 (302)
T 2xn4_A          138 HVAPMNTRRSSVGVGVV--GGL-LYAVGGYDVASRQCLSTVECYNATTNE--WTYIAEMSTRRSGAGVGVL--NN-LLYA  209 (302)
T ss_dssp             EECCCSSCCBSCEEEEE--TTE-EEEECCEETTTTEECCCEEEEETTTTE--EEEECCCSSCCBSCEEEEE--TT-EEEE
T ss_pred             ecCCCCCcccCceEEEE--CCE-EEEEeCCCCCCCccccEEEEEeCCCCc--EEECCCCccccccccEEEE--CC-EEEE
Confidence            1  111111  222222  444 77776542       358889987521  22221   11111122222  45 6777


Q ss_pred             EecCC-----CeEEEEecCC
Q 019059          270 SAGTD-----STVNLWLVST  284 (346)
Q Consensus       270 s~~~d-----~~i~iwd~~~  284 (346)
                      .|+.+     ..+.+||..+
T Consensus       210 ~GG~~~~~~~~~~~~yd~~~  229 (302)
T 2xn4_A          210 VGGHDGPLVRKSVEVYDPTT  229 (302)
T ss_dssp             ECCBSSSSBCCCEEEEETTT
T ss_pred             ECCCCCCcccceEEEEeCCC
Confidence            77764     3688888876

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.76  E-value=0.18  Score=43.84  Aligned_cols=102  Identities=9%  Similarity=0.160  Sum_probs=57.3

Q ss_pred             eeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccc--eeec-------cc-eeEEEeCCC---CCcEEEEecC-------
Q 019059          170 YLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN--SIEH-------AH-VRNVDYDTK---KKHLLVTAAD-------  229 (346)
Q Consensus       170 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--~~~~-------~~-v~~~~~~~~---~~~~l~~~~~-------  229 (346)
                      ....++|.|+++.+++-...+.|++++..+++...  .+..       .. +..|+|+|+   +..++++-+.       
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~  107 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD  107 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence            45789999999855544333478888765554321  1110       12 779999995   4435554432       


Q ss_pred             -----CCeEEEEEcccCC------cce-eeec-CCCcceEEEEeCCCCCcEEEEec
Q 019059          230 -----ESGIHLWDLRMLK------API-QELP-GHTHWTWAVCCNPEYDGFILSAG  272 (346)
Q Consensus       230 -----dg~i~i~d~~~~~------~~~-~~~~-~~~~~v~~v~~~~~~~~~l~s~~  272 (346)
                           ...|.-++.....      +.+ ..+. ........|.|.|+| .+.++.+
T Consensus       108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG-~Lyv~~G  162 (454)
T 1cru_A          108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQ-KIYYTIG  162 (454)
T ss_dssp             CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTS-CEEEEEC
T ss_pred             cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCC-eEEEEEC
Confidence                 2356666554211      111 1122 112357889999999 6665544

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.70  E-value=0.26  Score=42.73  Aligned_cols=111  Identities=8%  Similarity=-0.066  Sum_probs=60.1

Q ss_pred             cceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeec------cCCceEEEEeecC---CCCcE
Q 019059           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA------HVGKINCVLWWSS---GRHDK  136 (346)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~---~~~~~  136 (346)
                      ...+.|+|.|+++.+++-    ...+.|.+++...       .....+..+..      .......|+|+|+   +..++
T Consensus        27 ~~P~~~a~~pdG~l~V~e----~~gg~I~~~~~~~-------g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lY   95 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTE----RATGKILRVNPES-------GSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIY   95 (454)
T ss_dssp             SSEEEEEECTTSCEEEEE----TTTCEEEEECTTT-------CCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEE
T ss_pred             CCceEEEEcCCCcEEEEE----cCCCEEEEEECCC-------CcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEE
Confidence            456799999999866653    2223577766431       11222222211      2456779999996   55445


Q ss_pred             EEEec------------CCeEEEEEcCCCCC----CceeeecccCCCceeeEEEEeCCCCCcEEEEe
Q 019059          137 LVSID------------EENIFLWSLDCSNK----NAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT  187 (346)
Q Consensus       137 ~~~~~------------d~~i~vwd~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  187 (346)
                      ++.+.            ...|..+++.....    ...+.........+....++|.|++.+.++.+
T Consensus        96 v~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A           96 ISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             EEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             EEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence            54442            23566666543211    11111111111123578999999998766655

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.70  E-value=0.18  Score=40.94  Aligned_cols=172  Identities=10%  Similarity=0.018  Sum_probs=82.9

Q ss_pred             cceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecC----CeEEEEEcCCCCCCceeeecccC
Q 019059           90 SYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDE----ENIFLWSLDCSNKNAQVQSKQSS  165 (346)
Q Consensus        90 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d----~~i~vwd~~~~~~~~~~~~~~~~  165 (346)
                      ...+.+||...       .....+..+.........+.  -++. +++.++.+    ..+.+||+.+.+ ...+...  .
T Consensus        23 ~~~~~~~d~~~-------~~W~~~~~~p~~r~~~~~~~--~~~~-lyv~GG~~~~~~~~~~~~d~~~~~-W~~~~~~--p   89 (306)
T 3ii7_A           23 PQSCRYFNPKD-------YSWTDIRCPFEKRRDAACVF--WDNV-VYILGGSQLFPIKRMDCYNVVKDS-WYSKLGP--P   89 (306)
T ss_dssp             TTSEEEEETTT-------TEEEECCCCSCCCBSCEEEE--ETTE-EEEECCBSSSBCCEEEEEETTTTE-EEEEECC--S
T ss_pred             CceEEEecCCC-------CCEecCCCCCcccceeEEEE--ECCE-EEEEeCCCCCCcceEEEEeCCCCe-EEECCCC--C
Confidence            34677888762       23333333322222222222  2344 56676644    678889987653 1122111  1


Q ss_pred             CCceeeEEEEeCCCCCcEEEEecC------CeEEEEEccCCCccc--eeeccc--eeEEEeCCCCCcEEEEecC------
Q 019059          166 GMLHYLSGGAWDPHDVNAVAATCE------SSVQFWDLRSMGKTN--SIEHAH--VRNVDYDTKKKHLLVTAAD------  229 (346)
Q Consensus       166 ~~~~~v~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~--~~~~~~--v~~~~~~~~~~~~l~~~~~------  229 (346)
                      ........+.+  ++..++.|+.+      ..+.+||+.+.+-..  .+..+.  ...+.+  ++. +++.|+.      
T Consensus        90 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~  164 (306)
T 3ii7_A           90 TPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGL-IYVCGGSLGNNVS  164 (306)
T ss_dssp             SCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTE-EEEECCEESCTTT
T ss_pred             ccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCE-EEEECCCCCCCCc
Confidence            11112222222  45666666643      468899988765221  121111  222222  444 6776653      


Q ss_pred             ---CCeEEEEEcccCCcceeeecCCC---cceEEEEeCCCCCcEEEEecCC-----CeEEEEecCC
Q 019059          230 ---ESGIHLWDLRMLKAPIQELPGHT---HWTWAVCCNPEYDGFILSAGTD-----STVNLWLVST  284 (346)
Q Consensus       230 ---dg~i~i~d~~~~~~~~~~~~~~~---~~v~~v~~~~~~~~~l~s~~~d-----~~i~iwd~~~  284 (346)
                         -..+.+||+.+.  ....+....   ..-..+.+  ++ .+++.|+.+     ..+.+||+.+
T Consensus       165 ~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~~~~yd~~~  225 (306)
T 3ii7_A          165 GRVLNSCEVYDPATE--TWTELCPMIEARKNHGLVFV--KD-KIFAVGGQNGLGGLDNVEYYDIKL  225 (306)
T ss_dssp             CEECCCEEEEETTTT--EEEEECCCSSCCBSCEEEEE--TT-EEEEECCEETTEEBCCEEEEETTT
T ss_pred             ccccceEEEeCCCCC--eEEECCCccchhhcceEEEE--CC-EEEEEeCCCCCCCCceEEEeeCCC
Confidence               345888998752  222222111   11122222  45 677777653     3588888876

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.65  E-value=0.38  Score=47.42  Aligned_cols=236  Identities=13%  Similarity=0.137  Sum_probs=127.8

Q ss_pred             ceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCce
Q 019059           79 RIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQ  158 (346)
Q Consensus        79 ~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~  158 (346)
                      ..+++....+....|.|-|+..+        ..+.+.-..-+    +.-.+|..+  +++--....+.|+|+++..+...
T Consensus        36 kyicvre~~~~~~~vvIidl~~~--------~~~~rrpi~Ad----sAIMnP~~~--iiALrag~~lQiFnl~~k~klks  101 (1630)
T 1xi4_A           36 KFICIREKVGEQAQVVIIDMNDP--------SNPIRRPISAD----SAIMNPASK--VIALKAGKTLQIFNIEMKSKMKA  101 (1630)
T ss_pred             ceEEEEecCCCCceEEEEECCCC--------CCcccccccch----hhccCCCcc--eEEEecCCeEEEeehHHhhhhcc
Confidence            44444433345557888888731        11211111112    223567766  45543478999999997665444


Q ss_pred             eeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCC-ccceeecc-----c-eeEEEeCCCCCcEEEEec---
Q 019059          159 VQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG-KTNSIEHA-----H-VRNVDYDTKKKHLLVTAA---  228 (346)
Q Consensus       159 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~-----~-v~~~~~~~~~~~~l~~~~---  228 (346)
                      .....      +|.-=.|-.+ +.|+..+ +..|+-|++.... +.+.+...     . |..-..+++.++++++|-   
T Consensus       102 ~~~~e------~VvfWkWis~-~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~  173 (1630)
T 1xi4_A          102 HTMTD------DVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQ  173 (1630)
T ss_pred             cccCC------CceEEEecCC-CeeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccC
Confidence            43322      5655567543 3344443 5679999997533 33333311     1 777778888886666554   


Q ss_pred             ---CCCeEEEEEcccCCcceeeecCCCcceEEEEeC--CCCCcEEEEecC---CCeEEEEecCCCCCCCCCcccccCCcc
Q 019059          229 ---DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCN--PEYDGFILSAGT---DSTVNLWLVSTSNHDELPSESLVESPN  300 (346)
Q Consensus       229 ---~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~--~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~  300 (346)
                         -.|.+.+|..+.  ..-+.+.+|......+...  +....+++.+..   .+.++|-++........      ..+ 
T Consensus       174 ~~~v~G~mQLyS~er--~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~------~f~-  244 (1630)
T 1xi4_A          174 QNRVVGAMQLYSVDR--KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ------PFP-  244 (1630)
T ss_pred             CCcccceeeeeeccc--ccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCC------CCc-
Confidence               347889999874  3455677777665544442  121134443332   26889988865200000      000 


Q ss_pred             ccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeecC
Q 019059          301 QRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLEK  346 (346)
Q Consensus       301 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~~  346 (346)
                      +........-..-..-..++..++.-. ++...+.-|.+.+||++.
T Consensus       245 kk~~~~~~~~~~~~Dfpv~~~vs~k~g-~iy~itk~G~~~~~d~~t  289 (1630)
T 1xi4_A          245 KKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLET  289 (1630)
T ss_pred             cccccccCCcccccCcceEEEeccccC-EEEEEecCceEEEEeccc
Confidence            000000000001122245677777665 777788889999999863

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=96.60  E-value=0.22  Score=40.54  Aligned_cols=203  Identities=7%  Similarity=0.031  Sum_probs=105.5

Q ss_pred             CCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecC----------CcceEEEEecCcccCCCCCccc
Q 019059           41 ENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTG----------ESYGAAIWQIPELYGQLNSPQL  110 (346)
Q Consensus        41 ~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~----------~d~~i~vw~~~~~~~~~~~~~~  110 (346)
                      .+.++.++.+..+......      +.  +--+++++..|..+....+          ....|+..+++         . 
T Consensus        36 ~~~ly~~~~dg~~~~~l~~------~~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d---------g-   97 (302)
T 3s25_A           36 NGRLYAMNIDGSNIHKLSN------DT--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN---------G-   97 (302)
T ss_dssp             TTEEEEEETTSCSCEEEEE------EE--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT---------S-
T ss_pred             CceEEEEcCCCCCCEEccC------Cc--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC---------C-
Confidence            4666666655543332221      11  2345788888888753221          13456666665         1 


Q ss_pred             eeeeeeeccCCceEEEEeecCCCCcEEEE---ecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEe
Q 019059          111 ERIAALDAHVGKINCVLWWSSGRHDKLVS---IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT  187 (346)
Q Consensus       111 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  187 (346)
                      .....+..  ..  +..|++++++++.+.   .....|...+++... ...+ ...      .+  .+++|+++.|+-.+
T Consensus        98 ~~~~~l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~l-t~~------~~--~~~~~~g~~iy~t~  163 (302)
T 3s25_A           98 HGSTVLDP--DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKI-KNH------YL--FTCNTSDRYFYYNN  163 (302)
T ss_dssp             CCCEEEEC--SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEE-ESS------CC--CCSEEETTEEEEEC
T ss_pred             CcceEeec--CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEE-eCC------Cc--eEeeEECCEEEEEe
Confidence            11222221  11  236788888766665   234455555665322 2222 221      11  34667888888776


Q ss_pred             c-CCeEEEEEccCCCccceeeccceeEEEeCCCCCcEEEEecCC-CeEEEEEcccCCcceeeecCCCcceEEEEeCCCCC
Q 019059          188 C-ESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADE-SGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYD  265 (346)
Q Consensus       188 ~-d~~i~i~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~  265 (346)
                      . ...|.+.++..+.....+. +... ..+.|++.+++.+-..+ ..|..-++..  .....+..  ..+  ..|+|++ 
T Consensus       164 ~g~~~Iy~~~l~g~~~~~l~~-~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG--~~~~~Lt~--~~~--~~~~~~g-  234 (302)
T 3s25_A          164 PKNGQLYRYDTASQSEALFYD-CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINN--PNPVVLTE--ANI--EHYNVYG-  234 (302)
T ss_dssp             TTTCCEEEEETTTTEEEEEEC-SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSS--CCCEECSC--SCE--EEEEEET-
T ss_pred             CCCceEEEEECCCCCEEEEeC-CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCC--CCeEEEeC--CCc--ceEEECC-
Confidence            5 5788888887655433322 3222 23558888555554333 3566666653  23344432  233  3477888 


Q ss_pred             cEEEEec--CCCeEEEEecCC
Q 019059          266 GFILSAG--TDSTVNLWLVST  284 (346)
Q Consensus       266 ~~l~s~~--~d~~i~iwd~~~  284 (346)
                      ..|+-++  ..+.|..-++.-
T Consensus       235 ~~Iy~~~~~~~~~i~~~~~DG  255 (302)
T 3s25_A          235 SLIFYQRGGDNPALCVVKNDG  255 (302)
T ss_dssp             TEEEEEECSSSCEEEEEETTS
T ss_pred             CEEEEEECCCCcEEEEEECCC
Confidence            6665442  234565555553

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.51  E-value=0.25  Score=41.24  Aligned_cols=102  Identities=9%  Similarity=0.134  Sum_probs=57.9

Q ss_pred             eeEEEEeCCCCCcEEEEecCCeEEEEEccCCC--cccee----eccc--eeEEEeCCC---CCcEEEEecC-------CC
Q 019059          170 YLSGGAWDPHDVNAVAATCESSVQFWDLRSMG--KTNSI----EHAH--VRNVDYDTK---KKHLLVTAAD-------ES  231 (346)
Q Consensus       170 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~----~~~~--v~~~~~~~~---~~~~l~~~~~-------dg  231 (346)
                      ....++|.|+++.++++...+.|++++.....  .+..+    ..+.  ...|+++|+   +..++++-..       ..
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~   98 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT   98 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence            56789999999856666778999999854221  11111    1112  789999996   4435554332       23


Q ss_pred             eEEEEEcccCC----cc---eeeec---CCCcceEEEEeCCCCCcEEEEec
Q 019059          232 GIHLWDLRMLK----AP---IQELP---GHTHWTWAVCCNPEYDGFILSAG  272 (346)
Q Consensus       232 ~i~i~d~~~~~----~~---~~~~~---~~~~~v~~v~~~~~~~~~l~s~~  272 (346)
                      .|..|++....    ..   +..+.   ........+.|.|+| .+.++.+
T Consensus        99 ~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~G  148 (353)
T 2g8s_A           99 AVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALG  148 (353)
T ss_dssp             EEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEEC
T ss_pred             EEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEEC
Confidence            56666654211    01   11111   111224679999999 6665543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.03  E-value=0.48  Score=38.54  Aligned_cols=138  Identities=9%  Similarity=-0.052  Sum_probs=68.2

Q ss_pred             CcEEEEec----C-----CeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecC-----CeEEEEEccC
Q 019059          134 HDKLVSID----E-----ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE-----SSVQFWDLRS  199 (346)
Q Consensus       134 ~~~~~~~~----d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~  199 (346)
                      .+++.++.    +     ..+.+||+.+.+  ...... ..........+.+  ++..++.|+.+     ..+.+||+.+
T Consensus        72 ~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~--W~~~~~-~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~  146 (308)
T 1zgk_A           72 LLYAVGGRNNSPDGNTDSSALDCYNPMTNQ--WSPCAP-MSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPER  146 (308)
T ss_dssp             EEEEECCEEEETTEEEECCCEEEEETTTTE--EEECCC-CSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTT
T ss_pred             EEEEECCCcCCCCCCeecceEEEECCCCCe--EeECCC-CCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCC
Confidence            35666654    2     468888887543  111111 1111112222223  45556665532     4688899887


Q ss_pred             CCccc--eeeccc--eeEEEeCCCCCcEEEEecCC-----CeEEEEEcccCCcceeeecC---CCcceEEEEeCCCCCcE
Q 019059          200 MGKTN--SIEHAH--VRNVDYDTKKKHLLVTAADE-----SGIHLWDLRMLKAPIQELPG---HTHWTWAVCCNPEYDGF  267 (346)
Q Consensus       200 ~~~~~--~~~~~~--v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~---~~~~v~~v~~~~~~~~~  267 (346)
                      .+-..  .+..+.  ...+.+  ++. +++.|+.+     ..+.+||+.+..  ...+..   .......+.+  ++ .+
T Consensus       147 ~~W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~--~~-~i  218 (308)
T 1zgk_A          147 DEWHLVAPMLTRRIGVGVAVL--NRL-LYAVGGFDGTNRLNSAECYYPERNE--WRMITAMNTIRSGAGVCVL--HN-CI  218 (308)
T ss_dssp             TEEEECCCCSSCCBSCEEEEE--TTE-EEEECCBCSSCBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEEE--TT-EE
T ss_pred             CeEeECCCCCccccceEEEEE--CCE-EEEEeCCCCCCcCceEEEEeCCCCe--EeeCCCCCCccccceEEEE--CC-EE
Confidence            64221  122111  222333  444 77777654     458889987521  222211   1111222223  45 67


Q ss_pred             EEEecCC-----CeEEEEecCC
Q 019059          268 ILSAGTD-----STVNLWLVST  284 (346)
Q Consensus       268 l~s~~~d-----~~i~iwd~~~  284 (346)
                      ++.|+.+     ..+.+||+.+
T Consensus       219 yv~GG~~~~~~~~~v~~yd~~~  240 (308)
T 1zgk_A          219 YAAGGYDGQDQLNSVERYDVET  240 (308)
T ss_dssp             EEECCBCSSSBCCCEEEEETTT
T ss_pred             EEEeCCCCCCccceEEEEeCCC
Confidence            7777664     4688899876

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=95.93  E-value=1.4  Score=43.14  Aligned_cols=211  Identities=12%  Similarity=0.100  Sum_probs=99.8

Q ss_pred             CeEEEEEecCCCCeEEEeeeeccccceEEeeecCCC------CceEEEEeecCCcceEEEEecCcccCCCCCccceeeee
Q 019059           42 NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFD------QRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAA  115 (346)
Q Consensus        42 ~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~------~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~  115 (346)
                      +.+..+++.+.  .+.......-+.+|.|+++.|..      +.+++++   -.|++++|++++         ..+.+..
T Consensus       532 ~~l~~fel~~~--~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~---~~d~tv~I~sL~---------~l~~~~~  597 (1158)
T 3ei3_A          532 RALYYLQIHPQ--ELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGL---WTDISARILKLP---------SFELLHK  597 (1158)
T ss_dssp             TEEEEEEEETT--EEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEE---TTTTEEEEEETT---------TCCEEEE
T ss_pred             CEEEEEEeeCC--ceeeecccCCCCceEEEEeecCCCCcccccEEEEEE---CCCCEEEEEECC---------CCCeEEE
Confidence            56666666652  22222223345789999998642      3455542   348999999998         3333332


Q ss_pred             eec-cCCceEEEEeec-CCCCcEEEEecCCeEEEEEcCCCC-CCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeE
Q 019059          116 LDA-HVGKINCVLWWS-SGRHDKLVSIDEENIFLWSLDCSN-KNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSV  192 (346)
Q Consensus       116 ~~~-~~~~i~~~~~~~-~~~~~~~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  192 (346)
                      ..- ......++.+.. .+...++++-.||.+..+.++... ......... -+ ..++.-..+...+..-+.+..+...
T Consensus       598 ~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~-LG-~~pv~L~~~~~~~~~~V~a~s~rp~  675 (1158)
T 3ei3_A          598 EMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVT-LG-TQPTVLRTFRSLSTTNVFACSDRPT  675 (1158)
T ss_dssp             EECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEE-CC-SSCCEEEEEESSSCEEEEEESSSCE
T ss_pred             EECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEE-cC-CCceEEEEEeeCCceeEEEECCCCE
Confidence            211 112334444332 222235666678988777765321 111111111 11 1233333333333333333334444


Q ss_pred             EEEEccCCCcc-ceeeccce-eEEEeCCCC-CcEEEEecCCCeEEEEEcccCCc-ceeeecCCCcceEEEEeCCCCCcEE
Q 019059          193 QFWDLRSMGKT-NSIEHAHV-RNVDYDTKK-KHLLVTAADESGIHLWDLRMLKA-PIQELPGHTHWTWAVCCNPEYDGFI  268 (346)
Q Consensus       193 ~i~d~~~~~~~-~~~~~~~v-~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~v~~~~~~~~~l  268 (346)
                      .++--+ ++.. ..+....+ ....|+... +.-++..+ ++.++|..+..... .++++. -...+..++++|.. ..+
T Consensus       676 liy~~~-~~l~~s~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~-~~~  751 (1158)
T 3ei3_A          676 VIYSSN-HKLVFSNVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVS-QCF  751 (1158)
T ss_dssp             EEEESS-SSEEEEEBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGG-TEE
T ss_pred             EEEEcC-CceEEeccChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCC-CEE
Confidence            444433 2211 11111111 233343221 11344333 45699988764322 233333 34577889999987 555


Q ss_pred             EEec
Q 019059          269 LSAG  272 (346)
Q Consensus       269 ~s~~  272 (346)
                      +.+.
T Consensus       752 ~v~~  755 (1158)
T 3ei3_A          752 GVLS  755 (1158)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4443

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=95.48  E-value=0.79  Score=37.02  Aligned_cols=138  Identities=8%  Similarity=0.029  Sum_probs=68.1

Q ss_pred             CcEEEEecC-----CeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec-------CCeEEEEEccCCC
Q 019059          134 HDKLVSIDE-----ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-------ESSVQFWDLRSMG  201 (346)
Q Consensus       134 ~~~~~~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------d~~i~i~d~~~~~  201 (346)
                      .+++.++.+     ..+.+||+.+.+  ...... ..........+.+  ++..++.++.       -..+.+||+.+.+
T Consensus       110 ~iyv~GG~~~~~~~~~~~~~d~~~~~--W~~~~~-~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~  184 (302)
T 2xn4_A          110 LLYAVGGFDGSTGLSSVEAYNIKSNE--WFHVAP-MNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNE  184 (302)
T ss_dssp             EEEEEEEECSSCEEEEEEEEETTTTE--EEEECC-CSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTE
T ss_pred             EEEEEcCCCCCccCceEEEEeCCCCe--EeecCC-CCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCc
Confidence            366777644     357788877543  222111 1111112222222  4555555553       2458899988764


Q ss_pred             ccc--eeeccc--eeEEEeCCCCCcEEEEecCC-----CeEEEEEcccCCcceeeecCCC---cceEEEEeCCCCCcEEE
Q 019059          202 KTN--SIEHAH--VRNVDYDTKKKHLLVTAADE-----SGIHLWDLRMLKAPIQELPGHT---HWTWAVCCNPEYDGFIL  269 (346)
Q Consensus       202 ~~~--~~~~~~--v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~---~~v~~v~~~~~~~~~l~  269 (346)
                      -..  .+..+.  ...+.+  ++. +++.|+.+     ..+.+||+.+ . ....+....   .....+.+  ++ .+++
T Consensus       185 W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~~-~-~W~~~~~~~~~r~~~~~~~~--~~-~i~v  256 (302)
T 2xn4_A          185 WTYIAEMSTRRSGAGVGVL--NNL-LYAVGGHDGPLVRKSVEVYDPTT-N-AWRQVADMNMCRRNAGVCAV--NG-LLYV  256 (302)
T ss_dssp             EEEECCCSSCCBSCEEEEE--TTE-EEEECCBSSSSBCCCEEEEETTT-T-EEEEECCCSSCCBSCEEEEE--TT-EEEE
T ss_pred             EEECCCCccccccccEEEE--CCE-EEEECCCCCCcccceEEEEeCCC-C-CEeeCCCCCCccccCeEEEE--CC-EEEE
Confidence            221  122111  222333  344 77777654     3688999875 2 122222111   11112222  45 6777


Q ss_pred             EecCCC-----eEEEEecCC
Q 019059          270 SAGTDS-----TVNLWLVST  284 (346)
Q Consensus       270 s~~~d~-----~i~iwd~~~  284 (346)
                      .|+.++     .+.+||..+
T Consensus       257 ~GG~~~~~~~~~v~~yd~~~  276 (302)
T 2xn4_A          257 VGGDDGSCNLASVEYYNPTT  276 (302)
T ss_dssp             ECCBCSSSBCCCEEEEETTT
T ss_pred             ECCcCCCcccccEEEEcCCC
Confidence            777653     488888876

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=95.36  E-value=0.87  Score=36.74  Aligned_cols=140  Identities=11%  Similarity=0.009  Sum_probs=70.3

Q ss_pred             CCCCcEEEEecC-----CeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecC-----CeEEEEEccCC
Q 019059          131 SGRHDKLVSIDE-----ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE-----SSVQFWDLRSM  200 (346)
Q Consensus       131 ~~~~~~~~~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~  200 (346)
                      ++. +++.++.+     ..+.+||+.+.+ ...+....  ........+.+  ++..++.|+.+     ..+.+||+.+.
T Consensus       112 ~~~-lyv~GG~~~~~~~~~~~~~d~~~~~-W~~~~~~p--~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~  185 (301)
T 2vpj_A          112 GDM-IYVSGGFDGSRRHTSMERYDPNIDQ-WSMLGDMQ--TAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTG  185 (301)
T ss_dssp             TTE-EEEECCBCSSCBCCEEEEEETTTTE-EEEEEECS--SCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTT
T ss_pred             CCE-EEEEcccCCCcccceEEEEcCCCCe-EEECCCCC--CCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCC
Confidence            444 56666533     468888887543 12221111  11112222222  45666666543     46889998876


Q ss_pred             Cccc--eeeccc--eeEEEeCCCCCcEEEEecCC-----CeEEEEEcccCCcceeeecC---CCcceEEEEeCCCCCcEE
Q 019059          201 GKTN--SIEHAH--VRNVDYDTKKKHLLVTAADE-----SGIHLWDLRMLKAPIQELPG---HTHWTWAVCCNPEYDGFI  268 (346)
Q Consensus       201 ~~~~--~~~~~~--v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~---~~~~v~~v~~~~~~~~~l  268 (346)
                      +-..  .+..+.  ...+.+  ++. +++.|+.+     ..+.+||+.+..  ...+..   .......+.+  ++ .++
T Consensus       186 ~W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~--~~-~i~  257 (301)
T 2vpj_A          186 HWTNVTPMATKRSGAGVALL--NDH-IYVVGGFDGTAHLSSVEAYNIRTDS--WTTVTSMTTPRCYVGATVL--RG-RLY  257 (301)
T ss_dssp             EEEEECCCSSCCBSCEEEEE--TTE-EEEECCBCSSSBCCCEEEEETTTTE--EEEECCCSSCCBSCEEEEE--TT-EEE
T ss_pred             cEEeCCCCCcccccceEEEE--CCE-EEEEeCCCCCcccceEEEEeCCCCc--EEECCCCCCcccceeEEEE--CC-EEE
Confidence            5322  111111  223333  344 77777654     468899987521  222221   1111122222  45 677


Q ss_pred             EEecCC-----CeEEEEecCC
Q 019059          269 LSAGTD-----STVNLWLVST  284 (346)
Q Consensus       269 ~s~~~d-----~~i~iwd~~~  284 (346)
                      +.|+.+     ..+.+||..+
T Consensus       258 v~GG~~~~~~~~~v~~yd~~~  278 (301)
T 2vpj_A          258 AIAGYDGNSLLSSIECYDPII  278 (301)
T ss_dssp             EECCBCSSSBEEEEEEEETTT
T ss_pred             EEcCcCCCcccccEEEEcCCC
Confidence            777765     3577888876

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.27  E-value=0.37  Score=42.40  Aligned_cols=91  Identities=11%  Similarity=0.015  Sum_probs=63.2

Q ss_pred             EEEEEccC----CC-ccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCc-----------c-eeeecCCCc
Q 019059          192 VQFWDLRS----MG-KTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA-----------P-IQELPGHTH  253 (346)
Q Consensus       192 i~i~d~~~----~~-~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----------~-~~~~~~~~~  253 (346)
                      +.+.|.+.    +. ....+..+. ...+..+|+|+++++.|-.+.++.++|+++...           . +.... -.-
T Consensus       300 v~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~Gl  378 (638)
T 3sbq_A          300 TPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGL  378 (638)
T ss_dssp             CCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCS
T ss_pred             eeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCC
Confidence            55666654    22 222233333 888999999998888888899999999984211           1 11122 234


Q ss_pred             ceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          254 WTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       254 ~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      .....+|.++| ....|.-.|.+|.-|++..
T Consensus       379 GPlHt~Fd~~G-~aYTtlfidSqvvkWni~~  408 (638)
T 3sbq_A          379 GPLHTTFDGRG-NAYTTLFIDSQVVKWNMEE  408 (638)
T ss_dssp             CEEEEEECSSS-EEEEEETTTTEEEEEEHHH
T ss_pred             cccEEEECCCC-ceEeeeeecceEEEEeccH
Confidence            56778999999 7777788899999999975

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=95.26  E-value=1.3  Score=38.37  Aligned_cols=113  Identities=7%  Similarity=-0.062  Sum_probs=59.4

Q ss_pred             cceEEeeecCCCC-ceEEEEeecCCcceEEEEecCcccCCCCCccceeeeee----e-----ccCCceEEEEeecC---C
Q 019059           66 NEIWDLSSCPFDQ-RIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL----D-----AHVGKINCVLWWSS---G  132 (346)
Q Consensus        66 ~~v~~~~~~~~~~-~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~----~-----~~~~~i~~~~~~~~---~  132 (346)
                      ...+.|+|.|++. +++++    ...|.|++++.+...      ...++..+    .     ........|+|+|+   +
T Consensus        14 ~~P~~~a~~pdG~~rl~V~----er~G~i~~~~~~g~~------~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n   83 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFIL----EKEGYVKILTPEGEI------FKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKN   83 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEE----ETTTEEEEECTTSCB------CSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHH
T ss_pred             CCceEEEECCCCCeEEEEE----eCCceEEEEeCCCCe------eeeeecCCcceeccCccccCCCcceeeEeCCCCcCC
Confidence            3567899999986 45554    367888888643100      00111111    1     11456789999986   3


Q ss_pred             CCcEEEEec--C----------CeEEEEEcCCCC-------CCceeeecccCCCceeeEEEEeCCCCCcEEEEec
Q 019059          133 RHDKLVSID--E----------ENIFLWSLDCSN-------KNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC  188 (346)
Q Consensus       133 ~~~~~~~~~--d----------~~i~vwd~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  188 (346)
                      .+++++-+.  +          ..|.-|.+....       ....+..............++|.||+.+.++.+.
T Consensus        84 ~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           84 GKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             CEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred             CEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence            333443332  1          145556665321       0111111111112235688999999977666654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=94.01  E-value=0.17  Score=41.87  Aligned_cols=108  Identities=5%  Similarity=-0.020  Sum_probs=64.4

Q ss_pred             EEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEe--CCCCCcEEEE--ecCCeEEEEEccCCCccceeeccc-
Q 019059          136 KLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAW--DPHDVNAVAA--TCESSVQFWDLRSMGKTNSIEHAH-  210 (346)
Q Consensus       136 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~--~~d~~i~i~d~~~~~~~~~~~~~~-  210 (346)
                      +++++.||.|.-+|..+++...++....    ..++....-  .+.+..++.+  ..||.|..+|..+|.....+..+. 
T Consensus        13 V~v~t~dG~l~Ald~~tG~~~W~~~~~~----~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l   88 (339)
T 2be1_A           13 LIAADVEGGLHAVDRRNGHIIWSIEPEN----FQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL   88 (339)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECGGG----SCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHH
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEecCCc----cCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccc
Confidence            6777789999999988877666554431    001111110  0112234444  479999999998875544333222 


Q ss_pred             ee--EEEeC-----------CCCCcEEEEecCCCeEEEEEcccCCcceeeec
Q 019059          211 VR--NVDYD-----------TKKKHLLVTAADESGIHLWDLRMLKAPIQELP  249 (346)
Q Consensus       211 v~--~~~~~-----------~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  249 (346)
                      +.  -+...           ..+. .+++|+.+|.+...|+++ ++.+..+.
T Consensus        89 v~~SP~~~~~~pvv~~~~~~~~~g-~Vy~Gs~~g~l~ald~~t-G~~~W~~~  138 (339)
T 2be1_A           89 VSTSPLHLKTNIVVNDSGKIVEDE-KVYTGSMRTIMYTINMLN-GEIISAFG  138 (339)
T ss_dssp             HTTCSEEEECC----------CCE-EEEECEEEEEEEEEETTT-CCEEEEES
T ss_pred             eeccccccCCCceeecccccccCC-EEEEEecCCEEEEEECCC-CcEEEEEe
Confidence            21  12110           0233 788999999999999998 55666665

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=93.93  E-value=2.3  Score=35.23  Aligned_cols=150  Identities=16%  Similarity=0.075  Sum_probs=82.4

Q ss_pred             eeeccCCceEEEEeecCCCCcEEEEec-CCeEEEEEcCCCCCCceeeec--ccCCCceeeEEEEeCCC---CCcEEEE-e
Q 019059          115 ALDAHVGKINCVLWWSSGRHDKLVSID-EENIFLWSLDCSNKNAQVQSK--QSSGMLHYLSGGAWDPH---DVNAVAA-T  187 (346)
Q Consensus       115 ~~~~~~~~i~~~~~~~~~~~~~~~~~~-d~~i~vwd~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~---~~~l~~~-~  187 (346)
                      .+...-.....|+|.|+|.  ++++.. .|.|++++...+.. ..+...  ...........++++|+   +..|++. +
T Consensus        26 ~va~gL~~P~~ia~~pdG~--llVter~~G~I~~v~~~~g~~-~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt  102 (347)
T 3das_A           26 TVATGLNSPWGLAPLPGGD--LLVSSRDEATITRVDAKTGRK-TELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFT  102 (347)
T ss_dssp             EEECCCSSEEEEEECTTSC--EEEEETTTCEEEEECTTTCCE-EEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEE
T ss_pred             EeecCCCCceEEEEcCCCc--EEEEEecCCEEEEEECCCCcE-eeecccCceeecCCCCceeeEeccccccCCEEEEEEe
Confidence            3333345678999999998  555555 89999988654432 111111  11112346789999996   4445543 2


Q ss_pred             --cCCeEEEEEccCCC----c---cc----eee--ccc-eeEEEeCCCCCcEEEEecC-------------CCeEEEEEc
Q 019059          188 --CESSVQFWDLRSMG----K---TN----SIE--HAH-VRNVDYDTKKKHLLVTAAD-------------ESGIHLWDL  238 (346)
Q Consensus       188 --~d~~i~i~d~~~~~----~---~~----~~~--~~~-v~~~~~~~~~~~~l~~~~~-------------dg~i~i~d~  238 (346)
                        .++.|.-|.+..+.    .   ..    .+.  ..| ...|+|.|+|. ++++.+.             .|.|.-.+.
T Consensus       103 ~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~  181 (347)
T 3das_A          103 SASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTGESGDTGLSQDRKSLGGKILRMTP  181 (347)
T ss_dssp             CSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECBCTTCGGGTTCTTCSTTCEEEECT
T ss_pred             cCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEECCCCCCccccCCCCCCCEEEEEeC
Confidence              34566667665421    1   11    111  124 77899999997 6666432             245544554


Q ss_pred             ccC---Ccc---eeee-cCCCcceEEEEeCCCCCcEEEE
Q 019059          239 RML---KAP---IQEL-PGHTHWTWAVCCNPEYDGFILS  270 (346)
Q Consensus       239 ~~~---~~~---~~~~-~~~~~~v~~v~~~~~~~~~l~s  270 (346)
                      ...   ..+   ...+ .+|. ....++|+|+| .++++
T Consensus       182 dG~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G-~L~~~  218 (347)
T 3das_A          182 DGEPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQ-RLFAS  218 (347)
T ss_dssp             TSSBCTTCSSTTCCEEEBCCS-BCCEEEECTTC-CEEEE
T ss_pred             CCCccCCCCCCCCeEEeeCCC-CcceEEECCCC-CEEEE
Confidence            321   000   1112 2343 34678999988 55544

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=93.81  E-value=0.86  Score=40.23  Aligned_cols=70  Identities=11%  Similarity=0.107  Sum_probs=53.3

Q ss_pred             eeEEEEeCCCCCcEEEEec-CCeEEEEEccCC------Cc-------cceeeccc-eeEEEeCCCCCcEEEEecCCCeEE
Q 019059          170 YLSGGAWDPHDVNAVAATC-ESSVQFWDLRSM------GK-------TNSIEHAH-VRNVDYDTKKKHLLVTAADESGIH  234 (346)
Q Consensus       170 ~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~------~~-------~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~  234 (346)
                      ...++..+|||+++++++. +.++.++|++..      +.       ......+- ....+|+++|. .+.+---|..|.
T Consensus       324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~-aYTtlfidSqvv  402 (638)
T 3sbq_A          324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGN-AYTTLFIDSQVV  402 (638)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSE-EEEEETTTTEEE
T ss_pred             CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCc-eEeeeeecceEE
Confidence            4567889999999999885 789999999842      11       11222222 89999999994 777777899999


Q ss_pred             EEEccc
Q 019059          235 LWDLRM  240 (346)
Q Consensus       235 i~d~~~  240 (346)
                      .|++..
T Consensus       403 kWni~~  408 (638)
T 3sbq_A          403 KWNMEE  408 (638)
T ss_dssp             EEEHHH
T ss_pred             EEeccH
Confidence            999875

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=93.73  E-value=2.3  Score=34.51  Aligned_cols=98  Identities=14%  Similarity=0.167  Sum_probs=50.5

Q ss_pred             CCCcEEEEecC--------CeEEEEEccCCCc--cceeeccc--eeEEEeCCCCCcEEEEecC-C-----CeEEEEEccc
Q 019059          179 HDVNAVAATCE--------SSVQFWDLRSMGK--TNSIEHAH--VRNVDYDTKKKHLLVTAAD-E-----SGIHLWDLRM  240 (346)
Q Consensus       179 ~~~~l~~~~~d--------~~i~i~d~~~~~~--~~~~~~~~--v~~~~~~~~~~~~l~~~~~-d-----g~i~i~d~~~  240 (346)
                      ++..++.|+.+        ..+.+||+.+.+-  +..+..+.  ...+.  -++. +++.|+. +     ..+.+||+.+
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~-iyv~GG~~~~~~~~~~~~~yd~~~  174 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDL-VYVIGGKGSDRKCLNKMCVYDPKK  174 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTE-EEEECCBCTTSCBCCCEEEEETTT
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCE-EEEEeCCCCCCcccceEEEEeCCC
Confidence            45555565521        4688999987642  11222111  22222  2444 7777765 2     3688899875


Q ss_pred             CCcceeeecC---CCcceEEEEeCCCCCcEEEEecCCC-----eEEEEecCC
Q 019059          241 LKAPIQELPG---HTHWTWAVCCNPEYDGFILSAGTDS-----TVNLWLVST  284 (346)
Q Consensus       241 ~~~~~~~~~~---~~~~v~~v~~~~~~~~~l~s~~~d~-----~i~iwd~~~  284 (346)
                      ..  -..+..   .......+.+  ++ .+++.|+.++     .+.+||..+
T Consensus       175 ~~--W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~  221 (315)
T 4asc_A          175 FE--WKELAPMQTARSLFGATVH--DG-RIIVAAGVTDTGLTSSAEVYSITD  221 (315)
T ss_dssp             TE--EEECCCCSSCCBSCEEEEE--TT-EEEEEEEECSSSEEEEEEEEETTT
T ss_pred             Ce--EEECCCCCCchhceEEEEE--CC-EEEEEeccCCCCccceEEEEECCC
Confidence            21  222211   1111122222  45 6777777654     578888876

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=93.73  E-value=4.4  Score=37.69  Aligned_cols=194  Identities=12%  Similarity=0.023  Sum_probs=102.3

Q ss_pred             ceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeec----cCCceEEEEeecCCCCcEEEEecC
Q 019059           67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA----HVGKINCVLWWSSGRHDKLVSIDE  142 (346)
Q Consensus        67 ~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~d  142 (346)
                      .|.++.-.+++..-+.+      ++.+..++...       ...........    ....|.++.-.+++.  +-+++..
T Consensus       374 ~v~~i~~d~~g~lWigt------~~GL~~~~~~~-------~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~--lWigT~~  438 (758)
T 3ott_A          374 RIRHIYEDKEQQLWIAT------DGSINRYDYAT-------RQFIHYNIVDNTGTYNTNWTYYIFEDTAGQ--LWISTCL  438 (758)
T ss_dssp             CEEEEEECTTSCEEEEE------TTEEEEEETTT-------TEEEEEEEECCC--CBSSSEEEEEECTTSE--EEEEESS
T ss_pred             ceEEEEECCCCCEEEEe------CCcHhhcCcCC-------CcEEEeecCCCcCCCCCceEEEEEEcCCCC--EEEEECC
Confidence            47777766666544432      23577787651       11111111010    234578887777766  5556555


Q ss_pred             CeEEEEEcCCC--CCCceee-----ecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceee----ccc-
Q 019059          143 ENIFLWSLDCS--NKNAQVQ-----SKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE----HAH-  210 (346)
Q Consensus       143 ~~i~vwd~~~~--~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~----~~~-  210 (346)
                      +-+.++|..+.  .....+.     .....-....|.++...+++...+.++..+-|..+|..+++......    ... 
T Consensus       439 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~  518 (758)
T 3ott_A          439 GGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKS  518 (758)
T ss_dssp             SCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGC
T ss_pred             CceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcc
Confidence            67888886521  0000110     01111112358888888888766544444568889987664332111    112 


Q ss_pred             eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeec--C-CCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          211 VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP--G-HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       211 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~-~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      +.++....+|. +.+ |+.. -+..+|..+..  ...+.  + ....|.++... +| . |..++.+| |..+|..+
T Consensus       519 ~~~i~~d~~g~-lWi-gt~~-Gl~~~~~~~~~--~~~~~~~gl~~~~i~~i~~~-~g-~-lWi~t~~G-l~~~~~~~  586 (758)
T 3ott_A          519 PNYLLCDEDGL-LWV-GFHG-GVMRINPKDES--QQSISFGSFSNNEILSMTCV-KN-S-IWVSTTNG-LWIIDRKT  586 (758)
T ss_dssp             EEEEEECTTSC-EEE-EETT-EEEEECC--CC--CCBCCCCC---CCEEEEEEE-TT-E-EEEEESSC-EEEEETTT
T ss_pred             cceEEECCCCC-EEE-EecC-ceEEEecCCCc--eEEecccCCCccceEEEEEC-CC-C-EEEECCCC-eEEEcCCC
Confidence            88888888887 444 4444 47788876422  22221  1 12457777653 55 4 44455556 77788776

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=93.42  E-value=4.8  Score=37.15  Aligned_cols=202  Identities=9%  Similarity=0.074  Sum_probs=104.4

Q ss_pred             eEEee-ecCCCCceEEEEeecCCc-ceEEEEecCcccCCCCCccceeee-eee-ccCC------ceEEEEeecCCCCcEE
Q 019059           68 IWDLS-SCPFDQRIFSTVFSTGES-YGAAIWQIPELYGQLNSPQLERIA-ALD-AHVG------KINCVLWWSSGRHDKL  137 (346)
Q Consensus        68 v~~~~-~~~~~~~l~~~~~~~~~d-~~i~vw~~~~~~~~~~~~~~~~~~-~~~-~~~~------~i~~~~~~~~~~~~~~  137 (346)
                      ...+. ++|++++++.+...||+| ..++++|+.         +.+.+. .+. .-+.      ....++|..++. +++
T Consensus       131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~---------t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~-~~~  200 (711)
T 4hvt_A          131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLE---------KKDFVKNGFEPITNSGKLLEGKFTYPTWINKDT-IIF  200 (711)
T ss_dssp             EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETT---------TTEECTTCSCCBCTTCCBCCEETCCEEEEETTE-EEE
T ss_pred             EeceeecCCCCCEEEEEeCCCCCceeEEEEEECC---------cCCcCCCCcccccccccccccccceeeEECCCE-EEE
Confidence            34455 899999988887777776 568999998         333332 111 0000      113347764333 333


Q ss_pred             EE----------ecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCc-----EEEEec---CCeEEEEEccC
Q 019059          138 VS----------IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVN-----AVAATC---ESSVQFWDLRS  199 (346)
Q Consensus       138 ~~----------~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----l~~~~~---d~~i~i~d~~~  199 (346)
                      +.          +....|+.|.+.+......+....... . ...+...+++++.     +++.+.   ...+++.|...
T Consensus       201 ~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~-~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  278 (711)
T 4hvt_A          201 NLVLHKNEITSSLYPNSLYIWKRGESIEKAKKLFEVPKE-Y-IYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKY  278 (711)
T ss_dssp             CCCCSTTCBCTTSSBCEEEEEETTSCGGGCEEEEECCTT-S-CEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSS
T ss_pred             EeCCCCCCcCcCCCCCEEEEEECCCChHHCeEEeccCCC-c-eEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCC
Confidence            32          123678899887764433333322111 1 1234455666664     333332   24566667653


Q ss_pred             CC-ccceeeccceeEEEeCCCCCcEEEEec----------CCCeEEEEEcccCC------cceee-ecC-CCcceEEEEe
Q 019059          200 MG-KTNSIEHAHVRNVDYDTKKKHLLVTAA----------DESGIHLWDLRMLK------APIQE-LPG-HTHWTWAVCC  260 (346)
Q Consensus       200 ~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~~------~~~~~-~~~-~~~~v~~v~~  260 (346)
                      .. ....+..+.-..+..+.++. +++...          ..+.|...|+....      ...+. +.. ....+..+.|
T Consensus       279 ~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  357 (711)
T 4hvt_A          279 KNLKLQKINMPSDATLQGSFKEY-VFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFIST  357 (711)
T ss_dssp             SSCEEEECCSCTTCEEEEEETTE-EEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEE
T ss_pred             CCCcceEeecCCcceEeeeECCE-EEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEE
Confidence            22 11222212211222334554 444321          35678889987631      12233 322 2346778888


Q ss_pred             CCCCCcEEEEecCCCe--EEEEecCC
Q 019059          261 NPEYDGFILSAGTDST--VNLWLVST  284 (346)
Q Consensus       261 ~~~~~~~l~s~~~d~~--i~iwd~~~  284 (346)
                      ..+  .++++...++.  |.++|+..
T Consensus       358 ~~~--~l~~~~~~~~~~~l~~~~~~~  381 (711)
T 4hvt_A          358 TKD--RVFLATYDNVVAKVVTFTLEN  381 (711)
T ss_dssp             CSS--CEEEEEEETTEEEEEEECEET
T ss_pred             ECC--EEEEEEEECCEEEEEEEECCC
Confidence            875  57777777774  66666654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=92.55  E-value=6.3  Score=36.26  Aligned_cols=147  Identities=6%  Similarity=0.070  Sum_probs=73.9

Q ss_pred             CCCCcEEEEecC------CeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCC--eEEEEEccCCCc
Q 019059          131 SGRHDKLVSIDE------ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCES--SVQFWDLRSMGK  202 (346)
Q Consensus       131 ~~~~~~~~~~~d------~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~  202 (346)
                      ++. +++.||.+      ..+.+||..+..  ...... ..... .-.+++...++..++.|+.++  .+.+||+.+.+-
T Consensus       451 ~~~-lyv~GG~~~~~~~~~dv~~yd~~t~~--W~~~~~-~p~~R-~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W  525 (695)
T 2zwa_A          451 NNQ-LLLIGGRKAPHQGLSDNWIFDMKTRE--WSMIKS-LSHTR-FRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIF  525 (695)
T ss_dssp             TTE-EEEECCBSSTTCBCCCCEEEETTTTE--EEECCC-CSBCC-BSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEE
T ss_pred             CCE-EEEEcCCCCCCCccccEEEEeCCCCc--EEECCC-CCCCc-ccceEEEEcCCEEEEECCCCCCCCEEEEECCCCce
Confidence            454 66776542      357888887542  111111 11111 112223323667777776543  799999987652


Q ss_pred             cce-----eeccc--eeEEEeCCCCCcEEEEecC--C-----CeEEEEEcccCCc--c--eeeecC----CCcceEEEEe
Q 019059          203 TNS-----IEHAH--VRNVDYDTKKKHLLVTAAD--E-----SGIHLWDLRMLKA--P--IQELPG----HTHWTWAVCC  260 (346)
Q Consensus       203 ~~~-----~~~~~--v~~~~~~~~~~~~l~~~~~--d-----g~i~i~d~~~~~~--~--~~~~~~----~~~~v~~v~~  260 (346)
                      ...     ...+.  ..++.+..+...+++.|+.  +     ..+.+||+.+..-  .  ...+..    .......+ .
T Consensus       526 ~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~-~  604 (695)
T 2zwa_A          526 KDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIK-Y  604 (695)
T ss_dssp             EECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEE-E
T ss_pred             EEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEE-E
Confidence            221     11111  3445555552337777765  2     4588999886330  0  111111    11111222 2


Q ss_pred             CCCCCcEEEEecCC--------CeEEEEecCC
Q 019059          261 NPEYDGFILSAGTD--------STVNLWLVST  284 (346)
Q Consensus       261 ~~~~~~~l~s~~~d--------~~i~iwd~~~  284 (346)
                      ..++ .+++.|+.+        ..+.+||..+
T Consensus       605 ~~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~t  635 (695)
T 2zwa_A          605 ITPR-KLLIVGGTSPSGLFDRTNSIISLDPLS  635 (695)
T ss_dssp             EETT-EEEEECCBCSSCCCCTTTSEEEEETTT
T ss_pred             eCCC-EEEEECCccCCCCCCCCCeEEEEECCC
Confidence            2325 677777743        4588999886

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=92.32  E-value=3.8  Score=33.12  Aligned_cols=140  Identities=6%  Similarity=-0.021  Sum_probs=69.0

Q ss_pred             CCCCcEEEEecC-----CeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecC-----CeEEEEEccCC
Q 019059          131 SGRHDKLVSIDE-----ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE-----SSVQFWDLRSM  200 (346)
Q Consensus       131 ~~~~~~~~~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~  200 (346)
                      +++ +++.++.+     ..+.+||+.+.+  ...... ..........+.+  ++..++.++.+     ..+.+||+.+.
T Consensus       121 ~~~-iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~-~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~  194 (308)
T 1zgk_A          121 DGH-IYAVGGSHGCIHHNSVERYEPERDE--WHLVAP-MLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERN  194 (308)
T ss_dssp             TTE-EEEECCEETTEECCCEEEEETTTTE--EEECCC-CSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTT
T ss_pred             CCE-EEEEcCCCCCcccccEEEECCCCCe--EeECCC-CCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCC
Confidence            444 56666432     468888887543  111111 1111112222233  45556666543     46889998876


Q ss_pred             Ccc--ceeeccc--eeEEEeCCCCCcEEEEecCC-----CeEEEEEcccCCcceeeecC---CCcceEEEEeCCCCCcEE
Q 019059          201 GKT--NSIEHAH--VRNVDYDTKKKHLLVTAADE-----SGIHLWDLRMLKAPIQELPG---HTHWTWAVCCNPEYDGFI  268 (346)
Q Consensus       201 ~~~--~~~~~~~--v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~---~~~~v~~v~~~~~~~~~l  268 (346)
                      +-.  ..+....  ...+.+  ++. +++.|+.+     ..+.+||+.+.  ....+..   .......+.+  ++ .++
T Consensus       195 ~W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~-~i~  266 (308)
T 1zgk_A          195 EWRMITAMNTIRSGAGVCVL--HNC-IYAAGGYDGQDQLNSVERYDVETE--TWTFVAPMKHRRSALGITVH--QG-RIY  266 (308)
T ss_dssp             EEEECCCCSSCCBSCEEEEE--TTE-EEEECCBCSSSBCCCEEEEETTTT--EEEECCCCSSCCBSCEEEEE--TT-EEE
T ss_pred             eEeeCCCCCCccccceEEEE--CCE-EEEEeCCCCCCccceEEEEeCCCC--cEEECCCCCCCccceEEEEE--CC-EEE
Confidence            422  1111111  223333  444 77777654     46889998752  1222211   1111122222  45 677


Q ss_pred             EEecCC-----CeEEEEecCC
Q 019059          269 LSAGTD-----STVNLWLVST  284 (346)
Q Consensus       269 ~s~~~d-----~~i~iwd~~~  284 (346)
                      +.|+.+     ..+.+||+.+
T Consensus       267 v~GG~~~~~~~~~v~~yd~~~  287 (308)
T 1zgk_A          267 VLGGYDGHTFLDSVECYDPDT  287 (308)
T ss_dssp             EECCBCSSCBCCEEEEEETTT
T ss_pred             EEcCcCCCcccceEEEEcCCC
Confidence            777754     3577888876

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=92.21  E-value=4  Score=33.13  Aligned_cols=98  Identities=10%  Similarity=0.107  Sum_probs=49.6

Q ss_pred             CCCcEEEEecC-------CeEEEEEccCCCccc--eeeccc--eeEEEeCCCCCcEEEEecC------CCeEEEEEcccC
Q 019059          179 HDVNAVAATCE-------SSVQFWDLRSMGKTN--SIEHAH--VRNVDYDTKKKHLLVTAAD------ESGIHLWDLRML  241 (346)
Q Consensus       179 ~~~~l~~~~~d-------~~i~i~d~~~~~~~~--~~~~~~--v~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~  241 (346)
                      ++..++.|+.+       ..+.+||+.+.+-..  .+....  ...+.  .++. +++.|+.      -..+.+||+.+.
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~-iyv~GG~~~~~~~~~~~~~yd~~~~  185 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGM-IYCLGGKTDDKKCTNRVFIYNPKKG  185 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ETTE-EEEECCEESSSCBCCCEEEEETTTT
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--ECCE-EEEEcCCCCCCCccceEEEEcCCCC
Confidence            45666666643       357888988765221  111111  22222  2454 7777763      235889998752


Q ss_pred             CcceeeecC---CCcceEEEEeCCCCCcEEEEecCC-----CeEEEEecCC
Q 019059          242 KAPIQELPG---HTHWTWAVCCNPEYDGFILSAGTD-----STVNLWLVST  284 (346)
Q Consensus       242 ~~~~~~~~~---~~~~v~~v~~~~~~~~~l~s~~~d-----~~i~iwd~~~  284 (346)
                      .  -..+..   .......+.+  ++ .+++.|+.+     ..+.+||+.+
T Consensus       186 ~--W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~  231 (318)
T 2woz_A          186 D--WKDLAPMKTPRSMFGVAIH--KG-KIVIAGGVTEDGLSASVEAFDLKT  231 (318)
T ss_dssp             E--EEEECCCSSCCBSCEEEEE--TT-EEEEEEEEETTEEEEEEEEEETTT
T ss_pred             E--EEECCCCCCCcccceEEEE--CC-EEEEEcCcCCCCccceEEEEECCC
Confidence            1  222211   1111122222  45 667777643     3577888876

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=92.00  E-value=4.2  Score=33.58  Aligned_cols=94  Identities=9%  Similarity=-0.061  Sum_probs=44.8

Q ss_pred             CCCCcEEEEec-CCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec-C---------CeEEEEEccC
Q 019059          131 SGRHDKLVSID-EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-E---------SSVQFWDLRS  199 (346)
Q Consensus       131 ~~~~~~~~~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d---------~~i~i~d~~~  199 (346)
                      ++. +++.++. ...+.++|+.+.....................+.+  ++..++.|+. +         ..+.+||+.+
T Consensus        19 ~~~-iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~   95 (357)
T 2uvk_A           19 NDT-VYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT   95 (357)
T ss_dssp             TTE-EEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred             CCE-EEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence            444 5666643 46788999874222222222111011112222223  4555666654 2         4688999887


Q ss_pred             CCcc--ceee-ccc--eeEEEeCCCCCcEEEEecCC
Q 019059          200 MGKT--NSIE-HAH--VRNVDYDTKKKHLLVTAADE  230 (346)
Q Consensus       200 ~~~~--~~~~-~~~--v~~~~~~~~~~~~l~~~~~d  230 (346)
                      .+-.  ..+. ...  ..++.  .++. +++.|+.+
T Consensus        96 ~~W~~~~~~~p~~r~~~~~~~--~~~~-iyv~GG~~  128 (357)
T 2uvk_A           96 NSWVKLMSHAPMGMAGHVTFV--HNGK-AYVTGGVN  128 (357)
T ss_dssp             TEEEECSCCCSSCCSSEEEEE--ETTE-EEEEECCC
T ss_pred             CcEEECCCCCCcccccceEEE--ECCE-EEEEeCcC
Confidence            6422  1222 122  22333  3454 77777754

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=91.78  E-value=4.3  Score=32.65  Aligned_cols=171  Identities=8%  Similarity=-0.029  Sum_probs=82.5

Q ss_pred             ceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecC------CeEEEEEcCCCCCCceeeeccc
Q 019059           91 YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDE------ENIFLWSLDCSNKNAQVQSKQS  164 (346)
Q Consensus        91 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d------~~i~vwd~~~~~~~~~~~~~~~  164 (346)
                      ..+.+||...       .....+..+.........+.+  +++ +++.++.+      ..+.+||..+..  ...... .
T Consensus        70 ~~~~~~d~~~-------~~W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~~d~~~~~--W~~~~~-~  136 (306)
T 3ii7_A           70 KRMDCYNVVK-------DSWYSKLGPPTPRDSLAACAA--EGK-IYTSGGSEVGNSALYLFECYDTRTES--WHTKPS-M  136 (306)
T ss_dssp             CEEEEEETTT-------TEEEEEECCSSCCBSCEEEEE--TTE-EEEECCBBTTBSCCCCEEEEETTTTE--EEEECC-C
T ss_pred             ceEEEEeCCC-------CeEEECCCCCccccceeEEEE--CCE-EEEECCCCCCCcEeeeEEEEeCCCCc--eEeCCC-C
Confidence            4577778762       233443333222222222222  444 56666544      568889987643  121111 1


Q ss_pred             CCCceeeEEEEeCCCCCcEEEEec---------CCeEEEEEccCCCccc--eeeccc--eeEEEeCCCCCcEEEEecCC-
Q 019059          165 SGMLHYLSGGAWDPHDVNAVAATC---------ESSVQFWDLRSMGKTN--SIEHAH--VRNVDYDTKKKHLLVTAADE-  230 (346)
Q Consensus       165 ~~~~~~v~~~~~~~~~~~l~~~~~---------d~~i~i~d~~~~~~~~--~~~~~~--v~~~~~~~~~~~~l~~~~~d-  230 (346)
                      .........+.+  ++..++.++.         -..+.+||+.+.+-..  .+..+.  ...+.+  ++. +++.|+.+ 
T Consensus       137 p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~  211 (306)
T 3ii7_A          137 LTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDK-IFAVGGQNG  211 (306)
T ss_dssp             SSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTE-EEEECCEET
T ss_pred             cCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCE-EEEEeCCCC
Confidence            111111222222  4555555553         3458899998764221  121111  222222  444 77777653 


Q ss_pred             ----CeEEEEEcccCCcceeeec---CCCcceEEEEeCCCCCcEEEEecCC-----CeEEEEecCC
Q 019059          231 ----SGIHLWDLRMLKAPIQELP---GHTHWTWAVCCNPEYDGFILSAGTD-----STVNLWLVST  284 (346)
Q Consensus       231 ----g~i~i~d~~~~~~~~~~~~---~~~~~v~~v~~~~~~~~~l~s~~~d-----~~i~iwd~~~  284 (346)
                          ..+.+||+.+.  ....+.   ........+.+  ++ .+++.|+.+     ..+.+||..+
T Consensus       212 ~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~~~~yd~~~  272 (306)
T 3ii7_A          212 LGGLDNVEYYDIKLN--EWKMVSPMPWKGVTVKCAAV--GS-IVYVLAGFQGVGRLGHILEYNTET  272 (306)
T ss_dssp             TEEBCCEEEEETTTT--EEEECCCCSCCBSCCEEEEE--TT-EEEEEECBCSSSBCCEEEEEETTT
T ss_pred             CCCCceEEEeeCCCC--cEEECCCCCCCccceeEEEE--CC-EEEEEeCcCCCeeeeeEEEEcCCC
Confidence                35888998752  122221   11112223333  45 777777754     4688888876

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=91.66  E-value=4.6  Score=32.70  Aligned_cols=135  Identities=9%  Similarity=-0.031  Sum_probs=65.4

Q ss_pred             EEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec----C-------CeEEEEEccCCCcc-
Q 019059          136 KLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC----E-------SSVQFWDLRSMGKT-  203 (346)
Q Consensus       136 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d-------~~i~i~d~~~~~~~-  203 (346)
                      ++.++  ..+.+||..+.+-  ......  .............++..++.|+.    +       ..+..||..+.+-. 
T Consensus         8 ~~~GG--~~~~~yd~~~~~W--~~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~   81 (315)
T 4asc_A            8 FMISE--EGAVAYDPAANEC--YCASLS--SQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG   81 (315)
T ss_dssp             EEEET--TEEEEEETTTTEE--EEEECC--CCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE
T ss_pred             EEEcC--CceEEECCCCCeE--ecCCCC--CCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEE
Confidence            44444  6788999886542  221111  11111122222335666777763    1       12778898876521 


Q ss_pred             -ceeeccc--eeEEEeCCCCCcEEEEecCC--------CeEEEEEcccCCcceeeecC---CCcceEEEEeCCCCCcEEE
Q 019059          204 -NSIEHAH--VRNVDYDTKKKHLLVTAADE--------SGIHLWDLRMLKAPIQELPG---HTHWTWAVCCNPEYDGFIL  269 (346)
Q Consensus       204 -~~~~~~~--v~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~---~~~~v~~v~~~~~~~~~l~  269 (346)
                       ..+..+.  ...+.+  ++. +++.|+.+        ..+.+||+.+..  -..+..   .......+.  .++ .+++
T Consensus        82 ~~~~p~~r~~~~~~~~--~~~-lyv~GG~~~~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~--~~~-~iyv  153 (315)
T 4asc_A           82 MPPLPSPRCLFGLGEA--LNS-IYVVGGREIKDGERCLDSVMCYDRLSFK--WGESDPLPYVVYGHTVLS--HMD-LVYV  153 (315)
T ss_dssp             CCCBSSCEESCEEEEE--TTE-EEEECCEESSTTCCBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEE--ETT-EEEE
T ss_pred             CCCCCcchhceeEEEE--CCE-EEEEeCCcCCCCCcccceEEEECCCCCc--EeECCCCCCcccceeEEE--ECC-EEEE
Confidence             1122111  222222  444 77777632        358888887521  222211   111112222  344 6677


Q ss_pred             EecC-C-----CeEEEEecCC
Q 019059          270 SAGT-D-----STVNLWLVST  284 (346)
Q Consensus       270 s~~~-d-----~~i~iwd~~~  284 (346)
                      .|+. +     ..+.+||..+
T Consensus       154 ~GG~~~~~~~~~~~~~yd~~~  174 (315)
T 4asc_A          154 IGGKGSDRKCLNKMCVYDPKK  174 (315)
T ss_dssp             ECCBCTTSCBCCCEEEEETTT
T ss_pred             EeCCCCCCcccceEEEEeCCC
Confidence            7765 2     3688888876

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=91.45  E-value=8.9  Score=35.62  Aligned_cols=224  Identities=9%  Similarity=0.058  Sum_probs=118.6

Q ss_pred             ccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeee-eccCCceEEEEeecCCCCcEEEEecCC
Q 019059           65 PNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL-DAHVGKINCVLWWSSGRHDKLVSIDEE  143 (346)
Q Consensus        65 ~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~d~  143 (346)
                      ...|.+|.-..+|..-+.+     .+| +..||-.         ..+..... ......|.++.-..++.  +.++.. .
T Consensus        21 ~n~V~~I~qD~~G~lWigT-----~~G-L~ryDG~---------~~~~~~~~~~~~~~~i~~i~~d~~g~--lWigT~-~   82 (758)
T 3ott_A           21 ASVVSCFLQDSEGLIWIGS-----NKG-LFSYDGY---------STQQHFTYGENNNTRIYCGVIIDNTY--LYMGTD-N   82 (758)
T ss_dssp             CCCEEEEEECTTSCEEEEE-----SSC-EEEECSS---------CEEECSCTTSTTSSCEEEEEEETTTE--EEEEET-T
T ss_pred             cceEEEEEECCCCCEEEEE-----CCC-ccccCCC---------ceEEEEccCCCCCceEEEEEEcCCCc--EEEEeC-C
Confidence            3568888777766544443     444 5556632         11111000 11234688887777665  555544 4


Q ss_pred             eEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceee------ccc-eeEEEe
Q 019059          144 NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE------HAH-VRNVDY  216 (346)
Q Consensus       144 ~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~------~~~-v~~~~~  216 (346)
                      -+..||..+..-..    .. ......|..+.. .++ .+..++.+ .|..+|..+++.. .+.      ... |.++..
T Consensus        83 Gl~~yd~~~~~f~~----~~-~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~  153 (758)
T 3ott_A           83 GILVYNYRADRYEQ----PE-TDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIR  153 (758)
T ss_dssp             EEEEEETTTTEECC----CS-CCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCEEEEEE
T ss_pred             CeEEEeCCCCEEEC----cc-cCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeEEEEEE
Confidence            57889987542111    10 111224565544 234 46666655 6888998765432 221      112 888888


Q ss_pred             CCCCCcEEEEecCCCeEEEEEcccCCcceeeecC------CCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCC
Q 019059          217 DTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG------HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDEL  290 (346)
Q Consensus       217 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  290 (346)
                      .+++. +.+ +..+ -+..+|... . ....+..      ....|.++...+++ ..|..|+. +-+..+|..+      
T Consensus       154 d~~g~-lWi-gt~~-Gl~~~~~~~-~-~~~~~~~~~~~~~~~~~i~~i~~d~~~-~~lWigt~-~Gl~~~~~~~------  220 (758)
T 3ott_A          154 TKDNQ-IYV-GTYN-GLCRYIPSN-G-KFEGIPLPVHSSQSNLFVNSLLEDTTR-QCVWIGTE-GYLFQYFPST------  220 (758)
T ss_dssp             CTTCC-EEE-EETT-EEEEEETTT-T-EEEEECCCCCTTCSSCCEEEEEEETTT-TEEEEEEE-EEEEEEETTT------
T ss_pred             cCCCC-EEE-EeCC-CHhhCccCC-C-ceEEecCCCccccccceeEEEEEECCC-CEEEEEEC-CCCeEEcCCC------
Confidence            88887 444 4443 577788654 2 1222211      12347888777766 54444553 4577888765      


Q ss_pred             CcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059          291 PSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~  344 (346)
                                   .+...........|.++...+++. +.+ |+.+| +.+++.
T Consensus       221 -------------~~~~~~~~l~~~~i~~i~~d~~g~-lWi-gT~~G-l~~~~~  258 (758)
T 3ott_A          221 -------------GQIKQTEAFHNNSIKSLALDGNGD-LLA-GTDNG-LYVYHN  258 (758)
T ss_dssp             -------------TEEEEEEEEEEEEEEEEEECTTCC-EEE-EETTE-EEEECC
T ss_pred             -------------CeEEeccCCCCCeEEEEEEcCCCC-EEE-EeCCc-eeEEec
Confidence                         221111011234588888888886 443 33444 556654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=91.17  E-value=12  Score=36.71  Aligned_cols=222  Identities=9%  Similarity=0.046  Sum_probs=110.6

Q ss_pred             CeEEEEEecCCCC----eEEEeeeeccccceEEeeecCC----CCceEEEEeecCCcceEEEEecCcccCCCCCccceee
Q 019059           42 NEVHLLRLSSGGT----ELICEGLFSHPNEIWDLSSCPF----DQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERI  113 (346)
Q Consensus        42 ~~i~~~~~~~~~~----~~~~~~~~~h~~~v~~~~~~~~----~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~  113 (346)
                      +.=.++++...+.    .+........-++|.+++....    ...+++++ ..+.+|.+++..-.-        ..+..
T Consensus       347 Gds~l~~~~~~~~~~~~~~~~~~~~~N~~PI~D~~v~d~~~~~~~~i~~~s-G~g~~gsL~~lr~Gi--------~~~~~  417 (1158)
T 3ei3_A          347 GDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCS-GAFKEGSLRIIRNGI--------GIHEH  417 (1158)
T ss_dssp             SCEEEEEECSSCCTTSCCEEEEEEECCCCSEEEEEEECTTSSSCCEEEEEE-CCGGGCEEEEEEESB--------CEEEE
T ss_pred             CCcEEEEEecCCCCccceEEeEeeecCcCCceeEEEEccCCCCCCeEEEEE-CcCCCCeEEEEecCC--------CEEEE
Confidence            3445566654322    1222333344578888887532    24565553 345678898876431        11222


Q ss_pred             e--eeeccCCceEEEEeec---CCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec
Q 019059          114 A--ALDAHVGKINCVLWWS---SGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC  188 (346)
Q Consensus       114 ~--~~~~~~~~i~~~~~~~---~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  188 (346)
                      .  .+. .-..++.+....   ...+ ++.+. .+.-.++.+... ...+............+.+-.+ + +..++=.. 
T Consensus       418 ~~~~l~-gv~~iWtl~~~~~~~~~~y-LvlS~-~~~T~Vl~i~~e-~veev~~~gf~~~~~TL~~~~l-~-~~~ivQVt-  490 (1158)
T 3ei3_A          418 ASIDLP-GIKGLWPLRSDPNRETDDT-LVLSF-VGQTRVLMLNGE-EVEETELMGFVDDQQTFFCGNV-A-HQQLIQIT-  490 (1158)
T ss_dssp             EEECCC-SCCEEEEECCCSSCSSCCE-EEEEE-TTEEEEEEEETT-EEEEECCTTCCSSSCEEEEEEE-T-TTEEEEEE-
T ss_pred             EeecCC-CccEEEEEeecCCCCCCCE-EEEEC-CCCeEEEEEeCC-cccccccccccCCCCcEEEEEc-C-CCeEEEEe-
Confidence            2  222 234566665432   2343 44443 334466666421 1111111111100111222222 1 22233333 


Q ss_pred             CCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCC-cceeeecCCCcceEEEEeCCCC
Q 019059          189 ESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK-APIQELPGHTHWTWAVCCNPEY  264 (346)
Q Consensus       189 d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~v~~~~~~  264 (346)
                      ...|++.+......+..+..+.   |...+.+.  . .++.+. ++.+.++.+.... ...... .-...|.|+++.|..
T Consensus       491 ~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~-~vvva~-g~~l~~fel~~~~L~~~~~~-~l~~evscl~i~~~~  565 (1158)
T 3ei3_A          491 SASVRLVSQEPKALVSEWKEPQAKNISVASCNS--S-QVVVAV-GRALYYLQIHPQELRQISHT-EMEHEVACLDITPLG  565 (1158)
T ss_dssp             SSCEEEEESSSCCEEEEECCTTCCCCCEEEECS--S-EEEEEE-TTEEEEEEEETTEEEEEEEE-ECSSCEEEEECCCCS
T ss_pred             cCEEEEEECCCCeEEEEEECCCCCEEEEEEeCC--C-EEEEEE-CCEEEEEEeeCCceeeeccc-CCCCceEEEEeecCC
Confidence            3457788876555555554322   66656553  3 344444 5788888776421 111111 235679999998643


Q ss_pred             -----CcEEEEecC-CCeEEEEecCC
Q 019059          265 -----DGFILSAGT-DSTVNLWLVST  284 (346)
Q Consensus       265 -----~~~l~s~~~-d~~i~iwd~~~  284 (346)
                           ..+++.|.. |++|+|+++..
T Consensus       566 ~~~~~s~~~aVg~~~d~tv~I~sL~~  591 (1158)
T 3ei3_A          566 DSNGLSPLCAIGLWTDISARILKLPS  591 (1158)
T ss_dssp             SSTTCCSEEEEEETTTTEEEEEETTT
T ss_pred             CCcccccEEEEEECCCCEEEEEECCC
Confidence                 268899986 99999999975

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=90.01  E-value=8.9  Score=33.23  Aligned_cols=108  Identities=13%  Similarity=0.056  Sum_probs=58.6

Q ss_pred             CceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeec---ccC----CCceeeEEEEeCCC---CCcEEEE-ec-
Q 019059          121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK---QSS----GMLHYLSGGAWDPH---DVNAVAA-TC-  188 (346)
Q Consensus       121 ~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~---~~~----~~~~~v~~~~~~~~---~~~l~~~-~~-  188 (346)
                      ..-..|+|.|++..-++++...|.|++++.+.......+...   ...    .....+..++|+|+   ...|++. +. 
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            345789999999622556666899999975432111111111   000    11346789999996   2334433 22 


Q ss_pred             -C----------CeEEEEEccCC----------Cccceee---ccc-eeEEEeCCCCCcEEEEecC
Q 019059          189 -E----------SSVQFWDLRSM----------GKTNSIE---HAH-VRNVDYDTKKKHLLVTAAD  229 (346)
Q Consensus       189 -d----------~~i~i~d~~~~----------~~~~~~~---~~~-v~~~~~~~~~~~~l~~~~~  229 (346)
                       +          ..|.-|.+..+          +.+..+.   ..| ...|+|.|||. ++++.++
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~-LYv~~Gd  158 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGF-LYIILGD  158 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSC-EEEEECC
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCc-EEEEeCC
Confidence             1          13444655431          1111222   134 88999999997 6665443

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=89.11  E-value=14  Score=34.07  Aligned_cols=136  Identities=11%  Similarity=0.065  Sum_probs=66.4

Q ss_pred             eEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCC--eEEEEEcCCCCCCceeeec--ccCCC
Q 019059           92 GAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEE--NIFLWSLDCSNKNAQVQSK--QSSGM  167 (346)
Q Consensus        92 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~--~i~vwd~~~~~~~~~~~~~--~~~~~  167 (346)
                      .+.+||..       ...+..+..+...... .+++...++. +++.||.++  .+.+||..+..  ......  .....
T Consensus       469 dv~~yd~~-------t~~W~~~~~~p~~R~~-h~~~~~~~~~-iyv~GG~~~~~~v~~yd~~t~~--W~~~~~~g~~p~~  537 (695)
T 2zwa_A          469 DNWIFDMK-------TREWSMIKSLSHTRFR-HSACSLPDGN-VLILGGVTEGPAMLLYNVTEEI--FKDVTPKDEFFQN  537 (695)
T ss_dssp             CCEEEETT-------TTEEEECCCCSBCCBS-CEEEECTTSC-EEEECCBCSSCSEEEEETTTTE--EEECCCSSGGGGS
T ss_pred             cEEEEeCC-------CCcEEECCCCCCCccc-ceEEEEcCCE-EEEECCCCCCCCEEEEECCCCc--eEEccCCCCCCCc
Confidence            46777776       2234444333222222 2222223454 677775433  78999987643  222111  01111


Q ss_pred             ceeeEEEEeCCC-CCcEEEEec--C-----CeEEEEEccCCCc-----cceee----ccc--eeEEEeCCCCCcEEEEec
Q 019059          168 LHYLSGGAWDPH-DVNAVAATC--E-----SSVQFWDLRSMGK-----TNSIE----HAH--VRNVDYDTKKKHLLVTAA  228 (346)
Q Consensus       168 ~~~v~~~~~~~~-~~~l~~~~~--d-----~~i~i~d~~~~~~-----~~~~~----~~~--v~~~~~~~~~~~~l~~~~  228 (346)
                      ......+.+..+ +..++.|+.  +     ..+.+||+.+.+.     -..+.    .+.  ...+.+ .++. +++.|+
T Consensus       538 r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~-~~~~-iyv~GG  615 (695)
T 2zwa_A          538 SLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYI-TPRK-LLIVGG  615 (695)
T ss_dssp             CCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEE-ETTE-EEEECC
T ss_pred             ccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEe-CCCE-EEEECC
Confidence            112233455544 455666654  2     4688999988762     11111    111  222333 2244 777776


Q ss_pred             C--------CCeEEEEEccc
Q 019059          229 D--------ESGIHLWDLRM  240 (346)
Q Consensus       229 ~--------dg~i~i~d~~~  240 (346)
                      .        ...+.+||+.+
T Consensus       616 ~~~~~~~~~~~~v~~yd~~t  635 (695)
T 2zwa_A          616 TSPSGLFDRTNSIISLDPLS  635 (695)
T ss_dssp             BCSSCCCCTTTSEEEEETTT
T ss_pred             ccCCCCCCCCCeEEEEECCC
Confidence            3        34688999875

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=88.54  E-value=9.3  Score=31.46  Aligned_cols=47  Identities=9%  Similarity=0.008  Sum_probs=24.6

Q ss_pred             CeEEEEEccCCCccc--eeeccc-e-eEEEeCCCCCcEEEEecC------CCeEEEEEc
Q 019059          190 SSVQFWDLRSMGKTN--SIEHAH-V-RNVDYDTKKKHLLVTAAD------ESGIHLWDL  238 (346)
Q Consensus       190 ~~i~i~d~~~~~~~~--~~~~~~-v-~~~~~~~~~~~~l~~~~~------dg~i~i~d~  238 (346)
                      ..+.+||+.+.+-..  .+.... . .+++.. ++. +++.|+.      ...+.+||+
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~-iyv~GG~~~~~~~~~~v~~~d~  224 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDK-TWLINGEAKPGLRTDAVFELDF  224 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTE-EEEECCEEETTEECCCEEEEEC
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCE-EEEEeeecCCCcccCceEEEEe
Confidence            578999988765322  121111 1 223322 344 6777663      235777876

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=87.67  E-value=9.8  Score=30.73  Aligned_cols=99  Identities=6%  Similarity=0.021  Sum_probs=48.3

Q ss_pred             CcEEEEecC-------CeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec------CCeEEEEEccCC
Q 019059          134 HDKLVSIDE-------ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC------ESSVQFWDLRSM  200 (346)
Q Consensus       134 ~~~~~~~~d-------~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~i~d~~~~  200 (346)
                      .+++.++.+       ..+.+||..+.+  ...... ..........+.  .++..++.|+.      -..+.+||+.+.
T Consensus       111 ~iyv~GG~~~~~~~~~~~~~~yd~~~~~--W~~~~~-~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~  185 (318)
T 2woz_A          111 KIYVVAGKDLQTEASLDSVLCYDPVAAK--WSEVKN-LPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKG  185 (318)
T ss_dssp             EEEEEEEEBTTTCCEEEEEEEEETTTTE--EEEECC-CSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTT
T ss_pred             EEEEEcCccCCCCcccceEEEEeCCCCC--EeECCC-CCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCC
Confidence            367777643       357788877543  222111 111111112222  24555566653      245899999876


Q ss_pred             Cccc--eeeccc--eeEEEeCCCCCcEEEEecCC-----CeEEEEEccc
Q 019059          201 GKTN--SIEHAH--VRNVDYDTKKKHLLVTAADE-----SGIHLWDLRM  240 (346)
Q Consensus       201 ~~~~--~~~~~~--v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~  240 (346)
                      +-..  .+..+.  ...+.+  ++. +++.|+.+     ..+.+||+.+
T Consensus       186 ~W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~~  231 (318)
T 2woz_A          186 DWKDLAPMKTPRSMFGVAIH--KGK-IVIAGGVTEDGLSASVEAFDLKT  231 (318)
T ss_dssp             EEEEECCCSSCCBSCEEEEE--TTE-EEEEEEEETTEEEEEEEEEETTT
T ss_pred             EEEECCCCCCCcccceEEEE--CCE-EEEEcCcCCCCccceEEEEECCC
Confidence            5221  111111  222332  344 77776643     3577888875

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=84.50  E-value=1.3  Score=36.62  Aligned_cols=103  Identities=13%  Similarity=0.034  Sum_probs=59.3

Q ss_pred             CcEEEEecCCeEEEEEccCCCccceeecc--c-eeEEEe--CCCCCcEEEEe-cCCCeEEEEEcccCCcceeeecC----
Q 019059          181 VNAVAATCESSVQFWDLRSMGKTNSIEHA--H-VRNVDY--DTKKKHLLVTA-ADESGIHLWDLRMLKAPIQELPG----  250 (346)
Q Consensus       181 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~-v~~~~~--~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~----  250 (346)
                      ..+++++.||.|+-+|..+|+..-.+...  . +....-  .+.+...++.. ..||.+..+|..+ +.....+..    
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~-G~~~~~~~~~~lv   89 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQ-GLQKLPLSIRQLV   89 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTT-EEEEEEEEHHHHH
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCC-CcEEeeeccccce
Confidence            46888889999999999999877776643  1 111110  01122244443 5789999998765 322211110    


Q ss_pred             CCcceEE---EEe-C----CCCCcEEEEecCCCeEEEEecCCC
Q 019059          251 HTHWTWA---VCC-N----PEYDGFILSAGTDSTVNLWLVSTS  285 (346)
Q Consensus       251 ~~~~v~~---v~~-~----~~~~~~l~s~~~d~~i~iwd~~~~  285 (346)
                      ...++..   ... .    ..+ ..+++|+.++.+...|++++
T Consensus        90 ~~SP~~~~~~pvv~~~~~~~~~-g~Vy~Gs~~g~l~ald~~tG  131 (339)
T 2be1_A           90 STSPLHLKTNIVVNDSGKIVED-EKVYTGSMRTIMYTINMLNG  131 (339)
T ss_dssp             TTCSEEEECC----------CC-EEEEECEEEEEEEEEETTTC
T ss_pred             eccccccCCCceeecccccccC-CEEEEEecCCEEEEEECCCC
Confidence            1112211   000 0    033 57889999999998888875

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=83.50  E-value=25  Score=33.80  Aligned_cols=37  Identities=11%  Similarity=0.020  Sum_probs=31.2

Q ss_pred             eeEEEEeCCCCCcEEEEecCCeEEEEEccCCCcccee
Q 019059          170 YLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSI  206 (346)
Q Consensus       170 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  206 (346)
                      .+.+++..++..++++.+.|+++|+|++.+++++.+.
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence            4566777778889999999999999999999876654

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=81.26  E-value=36  Score=31.87  Aligned_cols=155  Identities=7%  Similarity=0.029  Sum_probs=71.5

Q ss_pred             ccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeec----cCCceEEEEeecCCCCcEEEEe
Q 019059           65 PNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA----HVGKINCVLWWSSGRHDKLVSI  140 (346)
Q Consensus        65 ~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~  140 (346)
                      .+.|.+|+++|..+.++.+.   ...+.|...+=.       ..+.+++.....    ....|.++++.|.....++++.
T Consensus        14 ~g~i~~i~~~p~~~~~~~a~---~~~ggv~rS~Dg-------G~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~   83 (789)
T 1sqj_A           14 GGYITGIVAHPKTKDLLYAR---TDIGGAYRWDAG-------TSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQ   83 (789)
T ss_dssp             CSCEEEEEECSSSTTCEEEE---ESSSCEEEEETT-------TTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEE
T ss_pred             CCcEEEEEECCCCCCEEEEE---ecCCCEEEecCC-------CCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEe
Confidence            46899999999765544442   344444433311       113333322111    1346899999986543455543


Q ss_pred             cCCe----EEEEEcCCCCCCceeeecccC--C---CceeeEEEEeCCCC-CcEEEEecCCeEEEEEccCCCccceee---
Q 019059          141 DEEN----IFLWSLDCSNKNAQVQSKQSS--G---MLHYLSGGAWDPHD-VNAVAATCESSVQFWDLRSMGKTNSIE---  207 (346)
Q Consensus       141 ~d~~----i~vwd~~~~~~~~~~~~~~~~--~---~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~---  207 (346)
                      .+..    -.||.-..+....+.......  +   ....+..++++|.. ..++++...+.|.. ....++.=..+.   
T Consensus        84 g~~~~~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~-S~DgG~TW~~~~~~~  162 (789)
T 1sqj_A           84 GRYVGDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIP  162 (789)
T ss_dssp             CSCTTSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEE-ESSTTSSCEEETTSC
T ss_pred             CccCCCcccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEE-ECCCCcccCCCccCc
Confidence            2211    344444443333333322110  0   01134567777754 34555543443321 222222111111   


Q ss_pred             ----ccc-eeEEEeCCCCCcEEEEecCC
Q 019059          208 ----HAH-VRNVDYDTKKKHLLVTAADE  230 (346)
Q Consensus       208 ----~~~-v~~~~~~~~~~~~l~~~~~d  230 (346)
                          ... +..+.++|.....++++..+
T Consensus       163 ~~~~~~~~~~~i~~~p~~~~~~~~~~~~  190 (789)
T 1sqj_A          163 DAFTNGIGYTSVIFDPERNGTIYASATA  190 (789)
T ss_dssp             CCCSTTTCEEEEEECTTSTTCEEEEESS
T ss_pred             cccCCCCCeEEEEECCCCCCEEEEEEcC
Confidence                112 88899988654345555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	346
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-07
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-06
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	8e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.001
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	8e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	7e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	7e-04

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.5 bits (119), Expect = 1e-07
 Identities = 40/336 (11%), Positives = 98/336 (29%), Gaps = 37/336 (11%)

Query: 10  YGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIW 69
           Y L      ++ V      +  ++ +    E+  + +    +G  E   +G   H + + 
Sbjct: 11  YALSGHRSPVTRVIFHPVFSVMVSAS----EDATIKVWDYETGDFERTLKG---HTDSVQ 63

Query: 70  DLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD-----AHVGKIN 124
           D+S     + + S                       +   +  ++ +          +  
Sbjct: 64  DISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDK 123

Query: 125 CVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAV 184
            +  W       + +      ++  +  +     + S  +   +        +       
Sbjct: 124 TIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE 183

Query: 185 AATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAP 244
                  + +         +SI  A         K    L++ + +  I +WD+      
Sbjct: 184 HRHVVECISWAP---ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM-C 239

Query: 245 IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRAN 304
           +  L GH +W   V  +     FILS   D T+ +W                   + +  
Sbjct: 240 LMTLVGHDNWVRGVLFHSGGK-FILSCADDKTLRVW-------------------DYKNK 279

Query: 305 SLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVR 340
             + + + +E  V  L +    P++  + S D  V+
Sbjct: 280 RCMKTLNAHEHFVTSLDFHKTAPYV-VTGSVDQTVK 314

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.0 bits (110), Expect = 2e-06
 Identities = 17/98 (17%), Positives = 48/98 (48%), Gaps = 5/98 (5%)

Query: 185 AATCESSVQFWDLRSMGKTNSIE--HAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLK 242
           + + + +++ WD+ +     ++      VR V + +  K + ++ AD+  + +WD +  +
Sbjct: 222 SGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFI-LSCADDKTLRVWDYKNKR 280

Query: 243 APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLW 280
             ++ L  H H+  ++  +     ++++   D TV +W
Sbjct: 281 -CMKTLNAHEHFVTSLDFHKT-APYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.7 bits (96), Expect = 8e-05
 Identities = 37/272 (13%), Positives = 88/272 (32%), Gaps = 43/272 (15%)

Query: 108 PQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEEN-IFLWSLD--------------- 151
           P+     AL  H   +  V++        +VS  E+  I +W  +               
Sbjct: 5   PRPPEKYALSGHRSPVTRVIFHPVFSV--MVSASEDATIKVWDYETGDFERTLKGHTDSV 62

Query: 152 ----------------------CSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE 189
                                   +       +   G  H +S  +  P+  + V+A+ +
Sbjct: 63  QDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRD 122

Query: 190 SSVQFWDLRSMGKTNSIE-HAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL 248
            +++ W++++     +   H     +    +   L+ + +++  + +W +   +    EL
Sbjct: 123 KTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE-CKAEL 181

Query: 249 PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLN 308
             H H    +   PE     +S  T S                 +  ++  +      L 
Sbjct: 182 REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM 241

Query: 309 SYSDYEDSVYGLAWSSREPWIFASLSYDGRVR 340
           +   +++ V G+ + S   +I  S + D  +R
Sbjct: 242 TLVGHDNWVRGVLFHSGGKFI-LSCADDKTLR 272

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.8 bits (114), Expect = 3e-07
 Identities = 17/129 (13%), Positives = 44/129 (34%), Gaps = 2/129 (1%)

Query: 152 CSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHV 211
            +   A+      S    Y++ G      +     + E     W  R+            
Sbjct: 158 KTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAE 217

Query: 212 RNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSA 271
           +  + +  ++ L+ T + ++ I ++ ++     I+ L  H      +         ++S+
Sbjct: 218 KGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET--PSTLVSS 275

Query: 272 GTDSTVNLW 280
           G D+ +  W
Sbjct: 276 GADACIKRW 284

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.0 bits (115), Expect = 4e-07
 Identities = 41/305 (13%), Positives = 88/305 (28%), Gaps = 43/305 (14%)

Query: 61  LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV 120
           L  H  +I+ +      + + S       S    +                ++ A+    
Sbjct: 51  LRGHLAKIYAMHWGTDSRLLVSA------SQDGKLIIWDSYTTN-------KVHAIPLRS 97

Query: 121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD 180
             +    +  S   + +     +NI       + +     S++ +G   YLS   +   +
Sbjct: 98  SWVMTCAYAPS--GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN 155

Query: 181 VNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRM 240
               ++   +   +        T    H              L V+ A ++   LWD+R 
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215

Query: 241 LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSE------- 293
                Q   GH     A+C  P  +    +   D+T  L+ +         S        
Sbjct: 216 GM-CRQTFTGHESDINAICFFPNGN-AFATGSDDATCRLFDLRADQELMTYSHDNIICGI 273

Query: 294 -SLVESPNQR-----------------ANSLLNSYSDYEDSVYGLAWSSREPWIFASLSY 335
            S+  S + R                         + +++ V  L  +     + A+ S+
Sbjct: 274 TSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAV-ATGSW 332

Query: 336 DGRVR 340
           D  ++
Sbjct: 333 DSFLK 337

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.2 bits (113), Expect = 6e-07
 Identities = 18/110 (16%), Positives = 44/110 (40%), Gaps = 7/110 (6%)

Query: 175 AWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH----VRNVDYDTKKKHLLVTAADE 230
            + P+       + +++ + +DLR+  +  +  H +    + +V +  K   LL+   D+
Sbjct: 233 CFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFS-KSGRLLLAGYDD 291

Query: 231 SGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLW 280
              ++WD          L GH +    +    +    + +   DS + +W
Sbjct: 292 FNCNVWDALKAD-RAGVLAGHDNRVSCLGVTDDGM-AVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 10/129 (7%), Positives = 38/129 (29%), Gaps = 7/129 (5%)

Query: 111 ERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHY 170
                   H   IN + ++ +G      +  ++            + ++ +     ++  
Sbjct: 217 MCRQTFTGHESDINAICFFPNGNA--FATGSDDATCRL--FDLRADQELMTYSHDNIICG 272

Query: 171 LSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE--HAHVRNVDYDTKKKHLLVTAA 228
           ++  ++       +A   + +   WD     +   +      V  +        +   + 
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332

Query: 229 DESGIHLWD 237
           D   + +W+
Sbjct: 333 DSF-LKIWN 340

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (109), Expect = 1e-06
 Identities = 28/167 (16%), Positives = 59/167 (35%), Gaps = 14/167 (8%)

Query: 124 NCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGG--AWDPHDV 181
              +         +V  D++ I   S D + K     + +    L+    G       D 
Sbjct: 130 LRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDR 189

Query: 182 NAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRML 241
             V+ + +++++ WD+        +   H   V         +V+ A +  I +WDL   
Sbjct: 190 LVVSGSSDNTIRLWDIECG-ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAA 248

Query: 242 KAP--------IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLW 280
             P        ++ L  H+   + +  +      I+S+  D T+ +W
Sbjct: 249 LDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQ---IVSSSHDDTILIW 292

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.3 bits (108), Expect = 2e-06
 Identities = 24/183 (13%), Positives = 57/183 (31%), Gaps = 23/183 (12%)

Query: 119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLH--YLSGGAW 176
               +  V               +  + +W  +      ++ S+  SG  H   +    +
Sbjct: 203 IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF 262

Query: 177 DPHDVNAVAATCESSVQFWDLRS--------------MGKTNSIEHAHVRNVDYDTKKKH 222
                + V+ + + SV+ W+L++                 T       V +V      ++
Sbjct: 263 TRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEY 322

Query: 223 LLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYD-----GFILSAGTDSTV 277
           + ++ + + G+  WD +    P+  L GH +   +V                +   D   
Sbjct: 323 I-LSGSKDRGVLFWDKKSGN-PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKA 380

Query: 278 NLW 280
            +W
Sbjct: 381 RIW 383

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.7 bits (96), Expect = 8e-05
 Identities = 31/198 (15%), Positives = 60/198 (30%), Gaps = 14/198 (7%)

Query: 57  ICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL 116
           +  G  S    I D  +            + G S   A+       G L         + 
Sbjct: 192 LRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAG-SLDRAVRVWDSETGFLVERLDSENESG 250

Query: 117 DAHVGKINCVLWWSSGRH------DKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHY 170
             H   +  V++   G+       D+ V +          D    N+        G   +
Sbjct: 251 TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF 310

Query: 171 LSGGAWDPHDVNAVAATCESSVQFWDLRSM-------GKTNSIEHAHVRNVDYDTKKKHL 223
           +   A   +D   ++ + +  V FWD +S        G  NS+    V N      + ++
Sbjct: 311 VLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNV 370

Query: 224 LVTAADESGIHLWDLRML 241
             T + +    +W  + +
Sbjct: 371 FATGSGDCKARIWKYKKI 388

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (90), Expect = 4e-04
 Identities = 43/229 (18%), Positives = 76/229 (33%), Gaps = 40/229 (17%)

Query: 128 WWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT 187
              SG  D+ V I +      SL  S ++       S G   Y++ G+ D          
Sbjct: 177 KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRA---VRVWD 233

Query: 188 CESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAP--- 244
            E+      L S  ++ +     V +V + T+    +V+ + +  + LW+L+        
Sbjct: 234 SETGFLVERLDSENESGTGHKDSVYSVVF-TRDGQSVVSGSLDRSVKLWNLQNANNKSDS 292

Query: 245 --------IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLV 296
                        GH  +  +V      D +ILS   D  V  W   + N          
Sbjct: 293 KTPNSGTCEVTYIGHKDFVLSVATTQN-DEYILSGSKDRGVLFWDKKSGN---------- 341

Query: 297 ESPNQRANSLLNSYSDYEDSVYGLAWSSREPW-----IFASLSYDGRVR 340
                     L     + +SV  +A ++         +FA+ S D + R
Sbjct: 342 ---------PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKAR 381

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.8 bits (101), Expect = 2e-05
 Identities = 24/219 (10%), Positives = 48/219 (21%), Gaps = 11/219 (5%)

Query: 64  HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKI 123
               I D+S     +R+               W      G+++       A        +
Sbjct: 114 LAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPM 173

Query: 124 NCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNA 183
             +     G          +            +     + S     ++     D      
Sbjct: 174 RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK---- 229

Query: 184 VAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA 243
                               +  E                  T   ++ I +WD+   K 
Sbjct: 230 ----ISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSK- 284

Query: 244 PIQELPGHTH--WTWAVCCNPEYDGFILSAGTDSTVNLW 280
            +Q+            V      +G I+S   D T+N +
Sbjct: 285 CVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 323

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (101), Expect = 2e-05
 Identities = 18/110 (16%), Positives = 41/110 (37%), Gaps = 3/110 (2%)

Query: 176 WDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHL 235
               D   V+A  + S++ WD     +  S  H ++  +       ++LV+ ++    ++
Sbjct: 249 LRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQ-FNI 307

Query: 236 WDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTS 285
           ++LR  K     +       W+V         + +   D    L ++  S
Sbjct: 308 YNLRSGKLVHANILKDADQIWSVNFKG--KTLVAAVEKDGQSFLEILDFS 355

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 4e-05
 Identities = 29/260 (11%), Positives = 70/260 (26%), Gaps = 9/260 (3%)

Query: 24  ADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFST 83
           +   + S ++    L  +N +   +L   G  LI        + +          RI + 
Sbjct: 80  SHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIV---GGEASTLSIWDLAAPTPRIKAE 136

Query: 84  VFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEE 143
           + S+  +  A                         +   +      + G     +S D  
Sbjct: 137 LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGT 196

Query: 144 NIFLWSLD---CSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSM 200
            ++   LD    S    + +  Q       +    + P           S+V+   +   
Sbjct: 197 KLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP 256

Query: 201 GKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCC 260
            K     H                V+   ++ ++ W        I +    +    +   
Sbjct: 257 DKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA-SIFQS-KESSSVLSCDI 314

Query: 261 NPEYDGFILSAGTDSTVNLW 280
           + + D +I++   D    ++
Sbjct: 315 SVD-DKYIVTGSGDKKATVY 333

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.3 bits (92), Expect = 2e-04
 Identities = 10/88 (11%), Positives = 28/88 (31%), Gaps = 1/88 (1%)

Query: 193 QFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHT 252
               +       ++ H+        +     + +A+ +  I +W++  LK   + +P  T
Sbjct: 222 TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLK-VEKTIPVGT 280

Query: 253 HWTWAVCCNPEYDGFILSAGTDSTVNLW 280
                          ++S   +  +N  
Sbjct: 281 RIEDQQLGIIWTKQALVSISANGFINFV 308

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 40.3 bits (93), Expect = 2e-04
 Identities = 18/111 (16%), Positives = 31/111 (27%), Gaps = 6/111 (5%)

Query: 175 AWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE-HAHVRNVDYDTKKKHLLVTAADESGI 233
             D  ++ +V       +   D  S      I+    V         ++LLV   D + I
Sbjct: 27  DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRD-ARI 85

Query: 234 HLWDLRMLK----APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLW 280
            + DL   +    A I+          +     E    I  A       + 
Sbjct: 86  DMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIM 136

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (88), Expect = 7e-04
 Identities = 11/91 (12%), Positives = 31/91 (34%), Gaps = 10/91 (10%)

Query: 250 GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNS 309
            H    ++V     +    +S   D  + +W     +++    +S     ++     +  
Sbjct: 12  AHDADIFSVSACNSF---TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV-- 66

Query: 310 YSDYEDSVYGLAWSSREPWIFASLSYDGRVR 340
                D +  +   + E  + A+ S+ G + 
Sbjct: 67  -----DVLQAIERDAFELCLVATTSFSGDLL 92

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 7e-04
 Identities = 19/107 (17%), Positives = 45/107 (42%), Gaps = 8/107 (7%)

Query: 175 AWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH--AHVRNVDYDTKKKHLLVTAADESG 232
             +  D   V+   +S+V+ WD+++     +++    H   V      K+ ++T++D+  
Sbjct: 222 GMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGT 281

Query: 233 IHLWDLRMLKA----PIQELPGHTHWTWAVCCNPEYDGFILSAGTDS 275
           + LWDL+  +        E  G     W +  +      + + G+ +
Sbjct: 282 VKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN--TKLVCAVGSRN 326

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	346
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.98
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.98
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.96
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.95
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.94
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.93
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.92
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.92
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.91
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.91
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.89
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.87
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.87
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.87
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.82
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.79
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.79
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.77
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.73
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.71
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.7
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.7
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.66
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.58
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.55
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.53
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.48
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.45
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.41
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.4
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.34
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.3
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.28
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.25
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.2
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.18
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.1
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.07
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.03
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.03
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.0
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.97
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.92
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.8
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.58
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	98.57
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.54
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.34
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.32
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.08
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.06
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	98.06
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.97
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.47
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.46
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.29
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.95
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.5
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.34
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.79
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	95.74
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	94.78
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	94.74
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.62
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.41
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	94.1
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.06
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	93.8
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	93.54
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	92.3
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	92.1
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	90.88
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	90.47
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	84.71
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	84.55

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-40  Score=280.33  Aligned_cols=281  Identities=15%  Similarity=0.168  Sum_probs=233.7

Q ss_pred             eEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCC--eEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEE
Q 019059           17 RCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGT--ELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAA   94 (346)
Q Consensus        17 ~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~   94 (346)
                      ..|.++.+++++..++.|.     ++.|.+|++.....  .+......+|.+.|.+++|+|+++.|+++    +.|+.|+
T Consensus        52 ~~V~~v~fs~~g~~latg~-----dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~----~~dg~i~  122 (337)
T d1gxra_          52 EVVCAVTISNPTRHVYTGG-----KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVG----GEASTLS  122 (337)
T ss_dssp             SCCCEEEECSSSSEEEEEC-----BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEE----ESSSEEE
T ss_pred             CcEEEEEECCCCCEEEEEE-----CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEe----ecccccc
Confidence            4567778888888888763     57899999876432  33334556899999999999999988875    6899999


Q ss_pred             EEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEE
Q 019059           95 IWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGG  174 (346)
Q Consensus        95 vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~  174 (346)
                      +||+..       ...+....+..|...+.+++|+|++.. +++++.|+.|++|++.+++...     ....|...+.++
T Consensus       123 iwd~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~d~~i~~~~~~~~~~~~-----~~~~~~~~v~~l  189 (337)
T d1gxra_         123 IWDLAA-------PTPRIKAELTSSAPACYALAISPDSKV-CFSCCSDGNIAVWDLHNQTLVR-----QFQGHTDGASCI  189 (337)
T ss_dssp             EEECCC-------C--EEEEEEECSSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTTEEEE-----EECCCSSCEEEE
T ss_pred             cccccc-------ccccccccccccccccccccccccccc-cccccccccccccccccccccc-----cccccccccccc
Confidence            999872       244566778889999999999999883 6667889999999998654322     223466689999


Q ss_pred             EeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCc
Q 019059          175 AWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTH  253 (346)
Q Consensus       175 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  253 (346)
                      +|++++..+++++.|+.+++||+++++.+..+.... |.+++|+|++. .+++++.|+.+++||++...  ......|..
T Consensus       190 ~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~  266 (337)
T d1gxra_         190 DISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGE-WLAVGMESSNVEVLHVNKPD--KYQLHLHES  266 (337)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSS-EEEEEETTSCEEEEETTSSC--EEEECCCSS
T ss_pred             cccccccccccccccccccccccccceeecccccccceEEEEEccccc-ccceeccccccccccccccc--ccccccccc
Confidence            999999999999999999999999998877766444 99999999998 89999999999999998633  445667999


Q ss_pred             ceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEe
Q 019059          254 WTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASL  333 (346)
Q Consensus       254 ~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  333 (346)
                      .|++++|+|++ .+|++++.|+.|++||+.+                   ++.+..+ .|...|++++|+|+++ +|+++
T Consensus       267 ~i~~v~~s~~g-~~l~s~s~Dg~i~iwd~~~-------------------~~~~~~~-~~~~~v~~~~~s~d~~-~l~t~  324 (337)
T d1gxra_         267 CVLSLKFAYCG-KWFVSTGKDNLLNAWRTPY-------------------GASIFQS-KESSSVLSCDISVDDK-YIVTG  324 (337)
T ss_dssp             CEEEEEECTTS-SEEEEEETTSEEEEEETTT-------------------CCEEEEE-ECSSCEEEEEECTTSC-EEEEE
T ss_pred             ccceEEECCCC-CEEEEEeCCCeEEEEECCC-------------------CCEEEEc-cCCCCEEEEEEeCCCC-EEEEE
Confidence            99999999999 9999999999999999998                   6776665 4677899999999997 89999


Q ss_pred             ecCCeEEEeee
Q 019059          334 SYDGRVRNHML  344 (346)
Q Consensus       334 ~~d~~v~vw~~  344 (346)
                      +.|++|+||||
T Consensus       325 s~D~~I~vWdl  335 (337)
T d1gxra_         325 SGDKKATVYEV  335 (337)
T ss_dssp             ETTSCEEEEEE
T ss_pred             eCCCeEEEEEE
Confidence            99999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.6e-40  Score=276.18  Aligned_cols=274  Identities=15%  Similarity=0.189  Sum_probs=218.2

Q ss_pred             eccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCc
Q 019059           21 DVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPE  100 (346)
Q Consensus        21 ~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~  100 (346)
                      .+..++++.+++.+.     .+.+.+|++.....   ...+.+|.+.|++++|+|++++|+++    +.|+.|++||+..
T Consensus        22 ~~a~~~~g~~l~~~~-----~~~v~i~~~~~~~~---~~~~~~H~~~v~~~~~sp~g~~latg----~~dg~i~iwd~~~   89 (311)
T d1nr0a1          22 VLGNTPAGDKIQYCN-----GTSVYTVPVGSLTD---TEIYTEHSHQTTVAKTSPSGYYCASG----DVHGNVRIWDTTQ   89 (311)
T ss_dssp             CCEECTTSSEEEEEE-----TTEEEEEETTCSSC---CEEECCCSSCEEEEEECTTSSEEEEE----ETTSEEEEEESSS
T ss_pred             EEEEcCCCCEEEEEe-----CCEEEEEECCCCce---eEEEcCCCCCEEEEEEeCCCCeEecc----ccCceEeeeeeec
Confidence            355678888888763     45788998876432   23456899999999999999888775    6899999999982


Q ss_pred             ccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEe--cCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCC
Q 019059          101 LYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI--DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDP  178 (346)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  178 (346)
                             ........+..|...|.+++|+|+++. +++++  .+..+++|++++++....     ..+|...|.+++|+|
T Consensus        90 -------~~~~~~~~~~~~~~~v~~v~~s~d~~~-l~~~~~~~~~~~~v~~~~~~~~~~~-----l~~h~~~v~~v~~~~  156 (311)
T d1nr0a1          90 -------TTHILKTTIPVFSGPVKDISWDSESKR-IAAVGEGRERFGHVFLFDTGTSNGN-----LTGQARAMNSVDFKP  156 (311)
T ss_dssp             -------TTCCEEEEEECSSSCEEEEEECTTSCE-EEEEECCSSCSEEEEETTTCCBCBC-----CCCCSSCEEEEEECS
T ss_pred             -------cccccccccccccCccccccccccccc-ccccccccccccccccccccccccc-----ccccccccccccccc
Confidence                   122334567889999999999999995 44444  356799999987654433     245677899999999


Q ss_pred             CCCc-EEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeee------
Q 019059          179 HDVN-AVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL------  248 (346)
Q Consensus       179 ~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------  248 (346)
                      ++++ +++++.|+.|++||+++++....+. .|   |+++.|+|+++ ++++++.|+.|++||++.. ..+..+      
T Consensus       157 ~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~-~~~~~i~~v~~~p~~~-~l~~~~~d~~v~~~d~~~~-~~~~~~~~~~~~  233 (311)
T d1nr0a1         157 SRPFRIISGSDDNTVAIFEGPPFKFKSTFG-EHTKFVHSVRYNPDGS-LFASTGGDGTIVLYNGVDG-TKTGVFEDDSLK  233 (311)
T ss_dssp             SSSCEEEEEETTSCEEEEETTTBEEEEEEC-CCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTC-CEEEECBCTTSS
T ss_pred             cceeeecccccccccccccccccccccccc-cccccccccccCcccc-ccccccccccccccccccc-cccccccccccc
Confidence            9987 6677889999999999988777665 44   99999999998 8999999999999999863 333333      


Q ss_pred             -cCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccccccc---ceeeEEEeCC
Q 019059          249 -PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYE---DSVYGLAWSS  324 (346)
Q Consensus       249 -~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~  324 (346)
                       .+|...|++++|+|++ .+|++|+.|+.|+|||+++                   ++++.++..|.   ..+.++.|++
T Consensus       234 ~~~h~~~V~~~~~s~~~-~~l~tgs~Dg~v~iwd~~t-------------------~~~~~~l~~~~~~~~~~~~~~~~~  293 (311)
T d1nr0a1         234 NVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVAT-------------------LKVEKTIPVGTRIEDQQLGIIWTK  293 (311)
T ss_dssp             SCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTT-------------------TEEEEEEECCSSGGGCEEEEEECS
T ss_pred             cccccccccccccCCCC-CEEEEEeCCCeEEEEECCC-------------------CcEEEEEECCCCccceEEEEEecC
Confidence             3688999999999999 9999999999999999998                   78887776553   3455666654


Q ss_pred             CCCcEEEEeecCCeEEEeeec
Q 019059          325 REPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       325 ~~~~~l~s~~~d~~v~vw~~~  345 (346)
                        . .|++++.||.|++||+|
T Consensus       294 --~-~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         294 --Q-ALVSISANGFINFVNPE  311 (311)
T ss_dssp             --S-CEEEEETTCCEEEEETT
T ss_pred             --C-EEEEEECCCEEEEEeCC
Confidence              3 57899999999999986

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.9e-39  Score=270.05  Aligned_cols=249  Identities=15%  Similarity=0.178  Sum_probs=210.6

Q ss_pred             EEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcE
Q 019059           57 ICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDK  136 (346)
Q Consensus        57 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  136 (346)
                      ..+++.+|.+.|++++|+|++++|+++    +.|+.|+|||+.         +.+.+..+..|...|.+++|+|++.+ +
T Consensus        47 ~~~tL~GH~~~I~~l~~s~~~~~l~sg----s~Dg~v~iWd~~---------~~~~~~~~~~~~~~v~~v~~~~~~~~-l  112 (340)
T d1tbga_          47 TRRTLRGHLAKIYAMHWGTDSRLLVSA----SQDGKLIIWDSY---------TTNKVHAIPLRSSWVMTCAYAPSGNY-V  112 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEE----ETTTEEEEEETT---------TTEEEEEEECSCSCEEEEEECTTSSE-E
T ss_pred             eeEEECCCCCCEEEEEECCCCCEEEEE----ECCCceeeeecc---------cceeEEEEecccccEEeeEeecccee-e
Confidence            346788999999999999999988885    699999999998         77888899999999999999999984 7


Q ss_pred             EEEecCCeEEEEEcCCCCCCceeee----------------------------------------cccCCCceeeEEEEe
Q 019059          137 LVSIDEENIFLWSLDCSNKNAQVQS----------------------------------------KQSSGMLHYLSGGAW  176 (346)
Q Consensus       137 ~~~~~d~~i~vwd~~~~~~~~~~~~----------------------------------------~~~~~~~~~v~~~~~  176 (346)
                      ++++.|+.+.+|+............                                        .....+...+....+
T Consensus       113 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (340)
T d1tbga_         113 ACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSL  192 (340)
T ss_dssp             EEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred             eeecccceeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeecc
Confidence            7778899999999765432221110                                        001122334566778


Q ss_pred             CCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeee--cCC
Q 019059          177 DPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL--PGH  251 (346)
Q Consensus       177 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~  251 (346)
                      .+....+++++.|+.|++||+++++++..+. +|   |++++|+|++. +|++++.|+.|++||++.. ..+..+  ..+
T Consensus       193 ~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~h~~~i~~v~~~p~~~-~l~s~s~d~~i~~~~~~~~-~~~~~~~~~~~  269 (340)
T d1tbga_         193 APDTRLFVSGACDASAKLWDVREGMCRQTFT-GHESDINAICFFPNGN-AFATGSDDATCRLFDLRAD-QELMTYSHDNI  269 (340)
T ss_dssp             CTTSSEEEEEETTTEEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTT-EEEEEECCTTC
T ss_pred             ccccceeEEeecCceEEEEECCCCcEEEEEe-CCCCCeEEEEECCCCC-EEEEEeCCCeEEEEeeccc-ccccccccccc
Confidence            8888889999999999999999999888776 44   99999999998 8999999999999999873 344443  456


Q ss_pred             CcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEE
Q 019059          252 THWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFA  331 (346)
Q Consensus       252 ~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  331 (346)
                      ...|.+++|+|++ .+|++|+.||.|++||+.+                   ++++..+.+|.++|++++|+|+++ +|+
T Consensus       270 ~~~i~~~~~s~~~-~~l~~g~~dg~i~iwd~~~-------------------~~~~~~~~~H~~~V~~l~~s~d~~-~l~  328 (340)
T d1tbga_         270 ICGITSVSFSKSG-RLLLAGYDDFNCNVWDALK-------------------ADRAGVLAGHDNRVSCLGVTDDGM-AVA  328 (340)
T ss_dssp             CSCEEEEEECSSS-CEEEEEETTSCEEEEETTT-------------------CCEEEEECCCSSCEEEEEECTTSS-CEE
T ss_pred             cCceEEEEECCCC-CEEEEEECCCEEEEEECCC-------------------CcEEEEEcCCCCCEEEEEEeCCCC-EEE
Confidence            6789999999999 9999999999999999998                   899999999999999999999997 899


Q ss_pred             EeecCCeEEEee
Q 019059          332 SLSYDGRVRNHM  343 (346)
Q Consensus       332 s~~~d~~v~vw~  343 (346)
                      +++.||.|+|||
T Consensus       329 s~s~Dg~v~iWd  340 (340)
T d1tbga_         329 TGSWDSFLKIWN  340 (340)
T ss_dssp             EEETTSCEEEEC
T ss_pred             EEccCCEEEEeC
Confidence            999999999997

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.7e-38  Score=263.61  Aligned_cols=288  Identities=16%  Similarity=0.291  Sum_probs=245.7

Q ss_pred             eeecccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeec
Q 019059            8 IGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFST   87 (346)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~   87 (346)
                      ..|.|+.+...|.++.+++++..++.|.    .++.|.+|++.....   ...+.+|.+.|.+++|+|++..+++.    
T Consensus         9 ~~~~L~GH~~~I~~l~~sp~~~~l~s~s----~Dg~i~iWd~~~~~~---~~~~~~h~~~V~~~~~~~~~~~~~~~----   77 (317)
T d1vyhc1           9 EKYALSGHRSPVTRVIFHPVFSVMVSAS----EDATIKVWDYETGDF---ERTLKGHTDSVQDISFDHSGKLLASC----   77 (317)
T ss_dssp             CSCEEECCSSCEEEEEECSSSSEEEEEE----SSSCEEEEETTTCCC---CEEECCCSSCEEEEEECTTSSEEEEE----
T ss_pred             ccEEEcCCCCCeEEEEEcCCCCEEEEEe----CCCeEEEEECCCCCE---EEEEeCCCCcEEEEeeeccccccccc----
Confidence            3456677778899999999988887764    689999999876532   35567899999999999999888875    


Q ss_pred             CCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCC
Q 019059           88 GESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGM  167 (346)
Q Consensus        88 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~  167 (346)
                      ..++.+.+|+..         ..+....+..|...+.++.|++++.. +++++.|+.+++||+.++.....+     .+|
T Consensus        78 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~-----~~~  142 (317)
T d1vyhc1          78 SADMTIKLWDFQ---------GFECIRTMHGHDHNVSSVSIMPNGDH-IVSASRDKTIKMWEVQTGYCVKTF-----TGH  142 (317)
T ss_dssp             ETTSCCCEEETT---------SSCEEECCCCCSSCEEEEEECSSSSE-EEEEETTSEEEEEETTTCCEEEEE-----ECC
T ss_pred             cccccccccccc---------ccccccccccccccceeeeccCCCce-EEeeccCcceeEeecccceeeeEE-----ccC
Confidence            578889999987         55666777889999999999999985 667788999999999876543333     235


Q ss_pred             ceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc--eeEEEeCCCCC-------------------cEEEE
Q 019059          168 LHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKK-------------------HLLVT  226 (346)
Q Consensus       168 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--v~~~~~~~~~~-------------------~~l~~  226 (346)
                      ...+.+++|+|++..+++++.|+.|++|++++++....+....  +.+++|+|+..                   .++++
T Consensus       143 ~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (317)
T d1vyhc1         143 REWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS  222 (317)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEE
T ss_pred             CCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEe
Confidence            5689999999999999999999999999999998877776322  88888887642                   26889


Q ss_pred             ecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccc
Q 019059          227 AADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSL  306 (346)
Q Consensus       227 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  306 (346)
                      ++.|+.|++||+++ ..++..+.+|...|.+++|+|++ .+|++++.||.|++||+++                   +++
T Consensus       223 ~~~d~~i~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~-------------------~~~  281 (317)
T d1vyhc1         223 GSRDKTIKMWDVST-GMCLMTLVGHDNWVRGVLFHSGG-KFILSCADDKTLRVWDYKN-------------------KRC  281 (317)
T ss_dssp             EETTSEEEEEETTT-TEEEEEEECCSSCEEEEEECSSS-SCEEEEETTTEEEEECCTT-------------------SCC
T ss_pred             ccCCCEEEEEECCC-CcEEEEEeCCCCCEEEEEECCCC-CEEEEEECCCeEEEEECCC-------------------CcE
Confidence            99999999999997 66888999999999999999999 9999999999999999998                   889


Q ss_pred             ccccccccceeeEEEeCCCCCcEEEEeecCCeEEEee
Q 019059          307 LNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHM  343 (346)
Q Consensus       307 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~  343 (346)
                      +..+.+|.+.|++++|+|+++ +|++++.|++|+|||
T Consensus       282 ~~~~~~h~~~V~~~~~s~~~~-~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         282 MKTLNAHEHFVTSLDFHKTAP-YVVTGSVDQTVKVWE  317 (317)
T ss_dssp             CEEEECCSSCEEEEEECSSSS-CEEEEETTSEEEEEC
T ss_pred             EEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEeC
Confidence            999999999999999999997 899999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.7e-38  Score=263.98  Aligned_cols=248  Identities=15%  Similarity=0.161  Sum_probs=204.7

Q ss_pred             cccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCC
Q 019059           64 HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEE  143 (346)
Q Consensus        64 h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~  143 (346)
                      +.+.+..++++|+++.++.+     .++.|.+|+++         .......+.+|...|.+++|+|+|++ +++++.|+
T Consensus        16 ~r~~~~~~a~~~~g~~l~~~-----~~~~v~i~~~~---------~~~~~~~~~~H~~~v~~~~~sp~g~~-latg~~dg   80 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDKIQYC-----NGTSVYTVPVG---------SLTDTEIYTEHSHQTTVAKTSPSGYY-CASGDVHG   80 (311)
T ss_dssp             CTTCCCCCEECTTSSEEEEE-----ETTEEEEEETT---------CSSCCEEECCCSSCEEEEEECTTSSE-EEEEETTS
T ss_pred             CCCCeEEEEEcCCCCEEEEE-----eCCEEEEEECC---------CCceeEEEcCCCCCEEEEEEeCCCCe-EeccccCc
Confidence            44566788999999998875     44579999998         56777788899999999999999984 67778899


Q ss_pred             eEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec--CCeEEEEEccCCCccceeeccc---eeEEEeCC
Q 019059          144 NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC--ESSVQFWDLRSMGKTNSIEHAH---VRNVDYDT  218 (346)
Q Consensus       144 ~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~  218 (346)
                      .|++||+.+.........   ..|...|.+++|+|+++.+++++.  +..+++|++++++....+. +|   |++++|+|
T Consensus        81 ~i~iwd~~~~~~~~~~~~---~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~-~h~~~v~~v~~~~  156 (311)
T d1nr0a1          81 NVRIWDTTQTTHILKTTI---PVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLT-GQARAMNSVDFKP  156 (311)
T ss_dssp             EEEEEESSSTTCCEEEEE---ECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCC-CCSSCEEEEEECS
T ss_pred             eEeeeeeecccccccccc---ccccCcccccccccccccccccccccccccccccccccccccccc-ccccccccccccc
Confidence            999999997765443332   346668999999999999999885  4669999999998887776 44   99999999


Q ss_pred             CCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCC
Q 019059          219 KKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVES  298 (346)
Q Consensus       219 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~  298 (346)
                      ++++++++|+.|+.|++||+++ .+....+..|..+|+++.|+|++ .+|++++.|+.|++||.+......         
T Consensus       157 ~~~~~l~sgs~d~~i~i~d~~~-~~~~~~~~~~~~~i~~v~~~p~~-~~l~~~~~d~~v~~~d~~~~~~~~---------  225 (311)
T d1nr0a1         157 SRPFRIISGSDDNTVAIFEGPP-FKFKSTFGEHTKFVHSVRYNPDG-SLFASTGGDGTIVLYNGVDGTKTG---------  225 (311)
T ss_dssp             SSSCEEEEEETTSCEEEEETTT-BEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEE---------
T ss_pred             cceeeecccccccccccccccc-cccccccccccccccccccCccc-cccccccccccccccccccccccc---------
Confidence            9987789999999999999997 56788888999999999999999 999999999999999998711000         


Q ss_pred             ccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          299 PNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                         ..........+|...|++++|+|+++ +|++++.|+.|+|||++
T Consensus       226 ---~~~~~~~~~~~h~~~V~~~~~s~~~~-~l~tgs~Dg~v~iwd~~  268 (311)
T d1nr0a1         226 ---VFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVA  268 (311)
T ss_dssp             ---ECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETT
T ss_pred             ---cccccccccccccccccccccCCCCC-EEEEEeCCCeEEEEECC
Confidence               00111123456889999999999997 89999999999999975

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.5e-38  Score=271.02  Aligned_cols=285  Identities=19%  Similarity=0.247  Sum_probs=224.5

Q ss_pred             eeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeE---------------EEeeeeccccceEEeeecCCCCc
Q 019059           15 QARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTEL---------------ICEGLFSHPNEIWDLSSCPFDQR   79 (346)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~---------------~~~~~~~h~~~v~~~~~~~~~~~   79 (346)
                      +...|.++.+++++..|+.|.     ++.|.+|++.......               .......|...|.+++|+|+++.
T Consensus        61 H~~~V~~l~fs~dg~~lasg~-----d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~  135 (388)
T d1erja_          61 HTSVVCCVKFSNDGEYLATGC-----NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF  135 (388)
T ss_dssp             CSSCCCEEEECTTSSEEEEEC-----BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSE
T ss_pred             CCCcEEEEEECCCCCEEEEEe-----CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCc
Confidence            345678888999998888763     5689999987643211               11223467788999999999998


Q ss_pred             eEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCcee
Q 019059           80 IFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQV  159 (346)
Q Consensus        80 l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~  159 (346)
                      |+++    +.|+.|++|+..         ..+.+..+.+|...|.+++|++++.. +++++.++.+++||..+.......
T Consensus       136 l~s~----~~dg~v~i~~~~---------~~~~~~~~~~h~~~v~~~~~~~~~~~-~~~~~~~~~i~~~d~~~~~~~~~~  201 (388)
T d1erja_         136 LATG----AEDRLIRIWDIE---------NRKIVMILQGHEQDIYSLDYFPSGDK-LVSGSGDRTVRIWDLRTGQCSLTL  201 (388)
T ss_dssp             EEEE----ETTSCEEEEETT---------TTEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ceec----cccccccccccc---------cccccccccccccccccccccccccc-ccccccceeeeeeecccccccccc
Confidence            8885    699999999998         67888888899999999999999884 677788999999999865432222


Q ss_pred             eecccCCCceeeEEEEe-CCCCCcEEEEecCCeEEEEEccCCCccceeec------cc---eeEEEeCCCCCcEEEEecC
Q 019059          160 QSKQSSGMLHYLSGGAW-DPHDVNAVAATCESSVQFWDLRSMGKTNSIEH------AH---VRNVDYDTKKKHLLVTAAD  229 (346)
Q Consensus       160 ~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~------~~---v~~~~~~~~~~~~l~~~~~  229 (346)
                      ..     +. ....+.+ .+++..+++++.|+.|++||.+++.....+..      +|   |.+++|+|++. +|++++.
T Consensus       202 ~~-----~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~  274 (388)
T d1erja_         202 SI-----ED-GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ-SVVSGSL  274 (388)
T ss_dssp             EC-----SS-CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSS-EEEEEET
T ss_pred             cc-----cc-ccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCC-EEEEEEC
Confidence            11     22 3344444 45778899999999999999998886655431      23   99999999998 8999999


Q ss_pred             CCeEEEEEcccCCc-----------ceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCC
Q 019059          230 ESGIHLWDLRMLKA-----------PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVES  298 (346)
Q Consensus       230 dg~i~i~d~~~~~~-----------~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~  298 (346)
                      |+.|++||++....           .......|...|.+++|+|++ .+|++|+.||.|++||+++              
T Consensus       275 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~sg~~dg~i~vwd~~~--------------  339 (388)
T d1erja_         275 DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND-EYILSGSKDRGVLFWDKKS--------------  339 (388)
T ss_dssp             TSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGG-CEEEEEETTSEEEEEETTT--------------
T ss_pred             CCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCC-CEEEEEeCCCEEEEEECCC--------------
Confidence            99999999875321           234455788999999999999 9999999999999999998              


Q ss_pred             ccccccccccccccccceeeEEE------eCCCCCcEEEEeecCCeEEEeeecC
Q 019059          299 PNQRANSLLNSYSDYEDSVYGLA------WSSREPWIFASLSYDGRVRNHMLEK  346 (346)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~v~~~~------~~~~~~~~l~s~~~d~~v~vw~~~~  346 (346)
                           ++++.++.+|.+.|++++      |+|++. +|++++.||+|+||++++
T Consensus       340 -----~~~~~~l~~H~~~V~~~~~~~~~~~spd~~-~l~s~s~Dg~I~iW~~~k  387 (388)
T d1erja_         340 -----GNPLLMLQGHRNSVISVAVANGSSLGPEYN-VFATGSGDCKARIWKYKK  387 (388)
T ss_dssp             -----CCEEEEEECCSSCEEEEEECSSCTTCTTCE-EEEEEETTSEEEEEEEEE
T ss_pred             -----CcEEEEEeCCCCCEEEEEEecCcccCCCCC-EEEEEeCCCEEEEEeeee
Confidence                 899999999999999887      467886 899999999999999974

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.3e-38  Score=267.23  Aligned_cols=305  Identities=16%  Similarity=0.158  Sum_probs=226.5

Q ss_pred             EeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEe
Q 019059           18 CISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQ   97 (346)
Q Consensus        18 ~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~   97 (346)
                      +|.++.+++++..+++|.    .++.|.+|++... .......+.+|.++|.+++|+|++++|+++    +.|+.|+|||
T Consensus         9 pIt~~~~s~dg~~la~~~----~~~~i~iw~~~~~-~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~----s~D~~i~vWd   79 (371)
T d1k8kc_           9 PISCHAWNKDRTQIAICP----NNHEVHIYEKSGN-KWVQVHELKEHNGQVTGVDWAPDSNRIVTC----GTDRNAYVWT   79 (371)
T ss_dssp             CCCEEEECTTSSEEEEEC----SSSEEEEEEEETT-EEEEEEEEECCSSCEEEEEEETTTTEEEEE----ETTSCEEEEE
T ss_pred             CeEEEEECCCCCEEEEEe----CCCEEEEEECCCC-CEEEEEEecCCCCCEEEEEECCCCCEEEEE----ECCCeEEEEe
Confidence            477888899999998873    5789999998763 334456678999999999999999988875    6899999999


Q ss_pred             cCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeC
Q 019059           98 IPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWD  177 (346)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~  177 (346)
                      +.       ....+....+..|...|.+++|+|+++. +++++.|+.|++|+++....... .......|...|.+++|+
T Consensus        80 ~~-------~~~~~~~~~~~~~~~~v~~i~~~p~~~~-l~~~s~d~~i~i~~~~~~~~~~~-~~~~~~~~~~~v~~v~~~  150 (371)
T d1k8kc_          80 LK-------GRTWKPTLVILRINRAARCVRWAPNEKK-FAVGSGSRVISICYFEQENDWWV-CKHIKKPIRSTVLSLDWH  150 (371)
T ss_dssp             EE-------TTEEEEEEECCCCSSCEEEEEECTTSSE-EEEEETTSSEEEEEEETTTTEEE-EEEECTTCCSCEEEEEEC
T ss_pred             ec-------cccccccccccccccccccccccccccc-ceeecccCcceeeeeeccccccc-cccccccccccccccccc
Confidence            97       2234555666788999999999999984 77778899999999987654322 223345577789999999


Q ss_pred             CCCCcEEEEecCCeEEEEEccCCCcc------------------ceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEE
Q 019059          178 PHDVNAVAATCESSVQFWDLRSMGKT------------------NSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLW  236 (346)
Q Consensus       178 ~~~~~l~~~~~d~~i~i~d~~~~~~~------------------~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~  236 (346)
                      |+++++++++.|+.|++||+......                  ... ..|   +.+++|+|+++ .+++++.|+.|++|
T Consensus       151 p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~-~l~s~~~d~~i~iw  228 (371)
T d1k8kc_         151 PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES-SSSCGWVHGVCFSANGS-RVAWVSHDSTVCLA  228 (371)
T ss_dssp             TTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC-CCCSSCEEEEEECSSSS-EEEEEETTTEEEEE
T ss_pred             ccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeec-cCccCcEEEEEeecccc-cccccccCCcceEE
Confidence            99999999999999999998754311                  111 123   89999999998 89999999999999


Q ss_pred             EcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCC-------CCcccccCC-----------
Q 019059          237 DLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDE-------LPSESLVES-----------  298 (346)
Q Consensus       237 d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-------~~~~~~~~~-----------  298 (346)
                      |++. ...+..+..|..+|.+++|+|++ .+|++|+ |+.+++|.........       .........           
T Consensus       229 d~~~-~~~~~~~~~~~~~v~s~~fs~d~-~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (371)
T d1k8kc_         229 DADK-KMAVATLASETLPLLAVTFITES-SLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLD  305 (371)
T ss_dssp             EGGG-TTEEEEEECSSCCEEEEEEEETT-EEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCC
T ss_pred             eeec-ccceeeeecccccceeeeecCCC-CEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEeccc
Confidence            9998 56788899999999999999999 8887766 6777777654421110       000000000           


Q ss_pred             ----ccccccccccccccccceeeEEEeCCCCC---cEEEEeecCCeEEEeeec
Q 019059          299 ----PNQRANSLLNSYSDYEDSVYGLAWSSREP---WIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       299 ----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~s~~~d~~v~vw~~~  345 (346)
                          ..............|.+.|+++++.|.+.   ..|+|+|.||.|++||++
T Consensus       306 ~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~  359 (371)
T d1k8kc_         306 KKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR  359 (371)
T ss_dssp             CCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHH
T ss_pred             ceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCC
Confidence                00000011111234888999999977442   368999999999999974

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-36  Score=255.23  Aligned_cols=248  Identities=14%  Similarity=0.184  Sum_probs=202.1

Q ss_pred             eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEE
Q 019059           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV  138 (346)
Q Consensus        59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  138 (346)
                      .....|...|.+++|+|++++|+++    + |+.|+|||+.....    ...........|.+.|.+++|+|+++. +++
T Consensus        45 ~~~~~H~~~V~~v~fs~~g~~latg----~-dg~V~iWd~~~~~~----~~~~~~~~~~~h~~~I~~v~~s~dg~~-l~s  114 (337)
T d1gxra_          45 INTLNHGEVVCAVTISNPTRHVYTG----G-KGCVKVWDISHPGN----KSPVSQLDCLNRDNYIRSCKLLPDGCT-LIV  114 (337)
T ss_dssp             EEEECCSSCCCEEEECSSSSEEEEE----C-BSEEEEEETTSTTC----CSCSEEEECSCTTSBEEEEEECTTSSE-EEE
T ss_pred             EEECCCCCcEEEEEECCCCCEEEEE----E-CCEEEEEEccCCcc----cceeEEeeecCCCCcEEEEEEcCCCCE-EEE
Confidence            3445899999999999999888874    4 78999999973211    111222334578999999999999984 677


Q ss_pred             EecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEE
Q 019059          139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVD  215 (346)
Q Consensus       139 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~  215 (346)
                      ++.|+.|++||+.........   ....|...+..++|+|++..+++++.|+.|++||+++++...... .|   +.+++
T Consensus       115 ~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~-~~~~~v~~l~  190 (337)
T d1gxra_         115 GGEASTLSIWDLAAPTPRIKA---ELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ-GHTDGASCID  190 (337)
T ss_dssp             EESSSEEEEEECCCC--EEEE---EEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEE
T ss_pred             eeccccccccccccccccccc---ccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence            788999999998754432222   223456689999999999999999999999999999988766655 33   99999


Q ss_pred             eCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccc
Q 019059          216 YDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESL  295 (346)
Q Consensus       216 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  295 (346)
                      |++++. .+++++.|+.+++||+++ .+.+..+. |...|.+++|+|++ .+|++++.|+.+++||++.           
T Consensus       191 ~s~~~~-~~~~~~~d~~v~i~d~~~-~~~~~~~~-~~~~i~~l~~~~~~-~~l~~~~~d~~i~i~d~~~-----------  255 (337)
T d1gxra_         191 ISNDGT-KLWTGGLDNTVRSWDLRE-GRQLQQHD-FTSQIFSLGYCPTG-EWLAVGMESSNVEVLHVNK-----------  255 (337)
T ss_dssp             ECTTSS-EEEEEETTSEEEEEETTT-TEEEEEEE-CSSCEEEEEECTTS-SEEEEEETTSCEEEEETTS-----------
T ss_pred             cccccc-cccccccccccccccccc-ceeecccc-cccceEEEEEcccc-cccceeccccccccccccc-----------
Confidence            999998 899999999999999997 44566554 78999999999999 9999999999999999997           


Q ss_pred             cCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          296 VESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                              .+. .....|...|++++|+|+++ +|++++.|+.|++||++
T Consensus       256 --------~~~-~~~~~~~~~i~~v~~s~~g~-~l~s~s~Dg~i~iwd~~  295 (337)
T d1gxra_         256 --------PDK-YQLHLHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRTP  295 (337)
T ss_dssp             --------SCE-EEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETT
T ss_pred             --------ccc-ccccccccccceEEECCCCC-EEEEEeCCCeEEEEECC
Confidence                    443 34567888999999999997 89999999999999975

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.1e-37  Score=263.96  Aligned_cols=242  Identities=12%  Similarity=0.141  Sum_probs=199.1

Q ss_pred             ccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCe
Q 019059           65 PNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEEN  144 (346)
Q Consensus        65 ~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~  144 (346)
                      .++|+|++|+|+++.|+++    +.|+.|+||++.       ..+...+..+++|.++|.+++|+|++++ +++++.|+.
T Consensus         7 ~~pIt~~~~s~dg~~la~~----~~~~~i~iw~~~-------~~~~~~~~~l~gH~~~V~~l~fsp~~~~-l~s~s~D~~   74 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAIC----PNNHEVHIYEKS-------GNKWVQVHELKEHNGQVTGVDWAPDSNR-IVTCGTDRN   74 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEE----CSSSEEEEEEEE-------TTEEEEEEEEECCSSCEEEEEEETTTTE-EEEEETTSC
T ss_pred             CCCeEEEEECCCCCEEEEE----eCCCEEEEEECC-------CCCEEEEEEecCCCCCEEEEEECCCCCE-EEEEECCCe
Confidence            4789999999999888775    689999999987       2244577788999999999999999984 677788999


Q ss_pred             EEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCcccee---eccc---eeEEEeCC
Q 019059          145 IFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSI---EHAH---VRNVDYDT  218 (346)
Q Consensus       145 i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~---~~~~---v~~~~~~~  218 (346)
                      |++||+.++.......   ..+|...+.+++|+|+++.+++++.|+.+++|++.........   ...+   |.+++|+|
T Consensus        75 i~vWd~~~~~~~~~~~---~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p  151 (371)
T d1k8kc_          75 AYVWTLKGRTWKPTLV---ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP  151 (371)
T ss_dssp             EEEEEEETTEEEEEEE---CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT
T ss_pred             EEEEeecccccccccc---cccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccc
Confidence            9999998654222222   2346678999999999999999999999999999876643322   2233   99999999


Q ss_pred             CCCcEEEEecCCCeEEEEEcccCC-----------------cceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEe
Q 019059          219 KKKHLLVTAADESGIHLWDLRMLK-----------------APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWL  281 (346)
Q Consensus       219 ~~~~~l~~~~~dg~i~i~d~~~~~-----------------~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd  281 (346)
                      ++. +|++|+.|+.|++||.....                 ..+.....|...|.+++|+|++ .+|++++.|+.|++||
T Consensus       152 ~~~-~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~s~~~d~~i~iwd  229 (371)
T d1k8kc_         152 NSV-LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG-SRVAWVSHDSTVCLAD  229 (371)
T ss_dssp             TSS-EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS-SEEEEEETTTEEEEEE
T ss_pred             ccc-ceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccc-ccccccccCCcceEEe
Confidence            998 89999999999999986421                 1344556788999999999999 9999999999999999


Q ss_pred             cCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059          282 VSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~  344 (346)
                      ++.                   +..+..+..|..+|.+++|+|++. +|++ +.|+.+++|..
T Consensus       230 ~~~-------------------~~~~~~~~~~~~~v~s~~fs~d~~-~la~-g~d~~~~~~~~  271 (371)
T d1k8kc_         230 ADK-------------------KMAVATLASETLPLLAVTFITESS-LVAA-GHDCFPVLFTY  271 (371)
T ss_dssp             GGG-------------------TTEEEEEECSSCCEEEEEEEETTE-EEEE-ETTSSCEEEEE
T ss_pred             eec-------------------ccceeeeecccccceeeeecCCCC-EEEE-EcCCceEEEEe
Confidence            998                   788888999999999999999986 6665 55788877764

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1e-35  Score=245.86  Aligned_cols=288  Identities=13%  Similarity=0.076  Sum_probs=213.8

Q ss_pred             eecccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecC
Q 019059            9 GYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTG   88 (346)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~   88 (346)
                      ..-+..+.+.|.++.+++++..++.|.    .++.|.+|++....  ........|...|.+++|+|++.. +++    +
T Consensus         5 ~~~~~GH~~~V~~l~~s~dg~~l~s~s----~Dg~v~vWd~~~~~--~~~~~~~~h~~~v~~v~~~~~g~~-~~~----~   73 (299)
T d1nr0a2           5 DQVRYGHNKAITALSSSADGKTLFSAD----AEGHINSWDISTGI--SNRVFPDVHATMITGIKTTSKGDL-FTV----S   73 (299)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEE----TTSCEEEEETTTCC--EEECSSCSCSSCEEEEEECTTSCE-EEE----E
T ss_pred             ceEcCCCCCCcEEEEECCCCCEEEEEc----CCCeEEEEECCCCc--EEEEEcCCCCCcEEEEEeecccee-ecc----c
Confidence            334455677888899999998888764    67899999987642  222233478999999999998864 443    4


Q ss_pred             CcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCc
Q 019059           89 ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGML  168 (346)
Q Consensus        89 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  168 (346)
                      .|+.+++|+.....      ..........+...+.+++|+++++  +++++.++.+.+|+...   ......      .
T Consensus        74 ~d~~v~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~s~~g~--~~~~~~~~~i~~~~~~~---~~~~~~------~  136 (299)
T d1nr0a2          74 WDDHLKVVPAGGSG------VDSSKAVANKLSSQPLGLAVSADGD--IAVAACYKHIAIYSHGK---LTEVPI------S  136 (299)
T ss_dssp             TTTEEEEECSSSSS------SCTTSCCEEECSSCEEEEEECTTSS--CEEEEESSEEEEEETTE---EEEEEC------S
T ss_pred             ceeeEEEeccCCcc------ccccccccccccccccccccccccc--ccccccccccccccccc---cccccc------c
Confidence            78899999986311      1111223345677899999999998  34444578999999642   111111      2


Q ss_pred             eeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCc--
Q 019059          169 HYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA--  243 (346)
Q Consensus       169 ~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--  243 (346)
                      ..+.+++|+|+++.+++++.|+.|++||+++++........|   |++++|+|++. ++++++.|+.|++||+.+...  
T Consensus       137 ~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~~~~~~~~~~~~  215 (299)
T d1nr0a2         137 YNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGA-FLVATDQSRKVIPYSVANNFELA  215 (299)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSS-EEEEEETTSCEEEEEGGGTTEES
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccc
Confidence            267889999999999999999999999999876544333233   99999999998 899999999999999986332  


Q ss_pred             ceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccc-cccceeeEEEe
Q 019059          244 PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYS-DYEDSVYGLAW  322 (346)
Q Consensus       244 ~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~  322 (346)
                      ....+..|..+|++++|+|++ .+|++|+.|+.|++||+++..                 ........ .+...|.++.|
T Consensus       216 ~~~~~~~h~~~v~~l~~s~~~-~~l~sgs~dg~i~iwd~~~~~-----------------~~~~~~~~~~~~~~v~~~~~  277 (299)
T d1nr0a2         216 HTNSWTFHTAKVACVSWSPDN-VRLATGSLDNSVIVWNMNKPS-----------------DHPIIIKGAHAMSSVNSVIW  277 (299)
T ss_dssp             CCCCCCCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCTT-----------------SCCEEETTSSTTSCEEEEEE
T ss_pred             ccccccccccccccccccccc-cceEEEcCCCEEEEEECCCCC-----------------cceEEEecCCCCCcEEEEEE
Confidence            234566799999999999999 999999999999999998710                 11222222 34456777766


Q ss_pred             CCCCCcEEEEeecCCeEEEeeec
Q 019059          323 SSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       323 ~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      .+ ++ +|++++.|++|++||+.
T Consensus       278 ~~-~~-~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         278 LN-ET-TIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             EE-TT-EEEEEETTSCEEEEECC
T ss_pred             CC-CC-EEEEEeCCCEEEEEecc
Confidence            54 55 78999999999999984

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.7e-35  Score=244.43  Aligned_cols=248  Identities=17%  Similarity=0.151  Sum_probs=195.7

Q ss_pred             EeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeee-eccCCceEEEEeecCCCCcE
Q 019059           58 CEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL-DAHVGKINCVLWWSSGRHDK  136 (346)
Q Consensus        58 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~  136 (346)
                      .+.+.||.+.|++++|+|++++|+++    +.|+.|++||++         +++.+..+ ..|...|.+++|+|++.  +
T Consensus         5 ~~~~~GH~~~V~~l~~s~dg~~l~s~----s~Dg~v~vWd~~---------~~~~~~~~~~~h~~~v~~v~~~~~g~--~   69 (299)
T d1nr0a2           5 DQVRYGHNKAITALSSSADGKTLFSA----DAEGHINSWDIS---------TGISNRVFPDVHATMITGIKTTSKGD--L   69 (299)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEE----ETTSCEEEEETT---------TCCEEECSSCSCSSCEEEEEECTTSC--E
T ss_pred             ceEcCCCCCCcEEEEECCCCCEEEEE----cCCCeEEEEECC---------CCcEEEEEcCCCCCcEEEEEeeccce--e
Confidence            46788999999999999999988875    699999999998         56666666 46899999999999987  6


Q ss_pred             EEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc-eeEEE
Q 019059          137 LVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVD  215 (346)
Q Consensus       137 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-v~~~~  215 (346)
                      ++++.|+.+++|+...........  ....+...+..++|+|++..++++ .++.+++|+...   .......+ +.+++
T Consensus        70 ~~~~~d~~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~s~~g~~~~~~-~~~~i~~~~~~~---~~~~~~~~~~~~~~  143 (299)
T d1nr0a2          70 FTVSWDDHLKVVPAGGSGVDSSKA--VANKLSSQPLGLAVSADGDIAVAA-CYKHIAIYSHGK---LTEVPISYNSSCVA  143 (299)
T ss_dssp             EEEETTTEEEEECSSSSSSCTTSC--CEEECSSCEEEEEECTTSSCEEEE-ESSEEEEEETTE---EEEEECSSCEEEEE
T ss_pred             ecccceeeEEEeccCCcccccccc--cccccccccccccccccccccccc-cccccccccccc---cccccccccccccc
Confidence            777789999999987543211111  111234478899999998866655 467899998543   22233344 89999


Q ss_pred             eCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccc
Q 019059          216 YDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESL  295 (346)
Q Consensus       216 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  295 (346)
                      |+|++. ++++++.|+.|++||+++..........|...|++++|+|++ .+|++++.|+.|++||+....         
T Consensus       144 ~s~~~~-~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~~~~~~~~---------  212 (299)
T d1nr0a2         144 LSNDKQ-FVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNG-AFLVATDQSRKVIPYSVANNF---------  212 (299)
T ss_dssp             ECTTSC-EEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTS-SEEEEEETTSCEEEEEGGGTT---------
T ss_pred             cccccc-cccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccc---------
Confidence            999998 899999999999999986332223345689999999999999 999999999999999998610         


Q ss_pred             cCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          296 VESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                             .......+.+|...|++++|+|+++ +|++++.|+.|++||++
T Consensus       213 -------~~~~~~~~~~h~~~v~~l~~s~~~~-~l~sgs~dg~i~iwd~~  254 (299)
T d1nr0a2         213 -------ELAHTNSWTFHTAKVACVSWSPDNV-RLATGSLDNSVIVWNMN  254 (299)
T ss_dssp             -------EESCCCCCCCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETT
T ss_pred             -------ccccccccccccccccccccccccc-ceEEEcCCCEEEEEECC
Confidence                   0123345667899999999999997 99999999999999975

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.7e-35  Score=245.35  Aligned_cols=246  Identities=20%  Similarity=0.280  Sum_probs=214.7

Q ss_pred             eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEE
Q 019059           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV  138 (346)
Q Consensus        59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  138 (346)
                      ..+.+|.++|++++|+|+++.|+++    +.|++|+|||++         +.+.+.++..|...|.+++|+|++.. +++
T Consensus        11 ~~L~GH~~~I~~l~~sp~~~~l~s~----s~Dg~i~iWd~~---------~~~~~~~~~~h~~~V~~~~~~~~~~~-~~~   76 (317)
T d1vyhc1          11 YALSGHRSPVTRVIFHPVFSVMVSA----SEDATIKVWDYE---------TGDFERTLKGHTDSVQDISFDHSGKL-LAS   76 (317)
T ss_dssp             CEEECCSSCEEEEEECSSSSEEEEE----ESSSCEEEEETT---------TCCCCEEECCCSSCEEEEEECTTSSE-EEE
T ss_pred             EEEcCCCCCeEEEEEcCCCCEEEEE----eCCCeEEEEECC---------CCCEEEEEeCCCCcEEEEeeeccccc-ccc
Confidence            4577999999999999999888875    689999999998         67888899999999999999999983 666


Q ss_pred             EecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc--eeEEEe
Q 019059          139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--VRNVDY  216 (346)
Q Consensus       139 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--v~~~~~  216 (346)
                      +..++.+.+|+........     ....|...+..+.|+|++..+++++.|+.+++||+++++....+....  +.+++|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (317)
T d1vyhc1          77 CSADMTIKLWDFQGFECIR-----TMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRP  151 (317)
T ss_dssp             EETTSCCCEEETTSSCEEE-----CCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred             ccccccccccccccccccc-----ccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeec
Confidence            6778999999987544222     223456689999999999999999999999999999998887776222  999999


Q ss_pred             CCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCC-------------------cEEEEecCCCeE
Q 019059          217 DTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYD-------------------GFILSAGTDSTV  277 (346)
Q Consensus       217 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~-------------------~~l~s~~~d~~i  277 (346)
                      +|++. ++++++.|+.|++|++++ ...+..+..|...+.++.|+|++.                   .++++++.|+.|
T Consensus       152 ~~~~~-~l~~~~~d~~v~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  229 (317)
T d1vyhc1         152 NQDGT-LIASCSNDQTVRVWVVAT-KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTI  229 (317)
T ss_dssp             CTTSS-EEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEE
T ss_pred             ccCCC-EEEEEeCCCeEEEEeecc-ceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEE
Confidence            99998 899999999999999997 557888889999999999988641                   468999999999


Q ss_pred             EEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          278 NLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       278 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      ++||+++                   ++++..+.+|...|.+++|+|+++ +|++++.||.|++||++
T Consensus       230 ~~~~~~~-------------------~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~  277 (317)
T d1vyhc1         230 KMWDVST-------------------GMCLMTLVGHDNWVRGVLFHSGGK-FILSCADDKTLRVWDYK  277 (317)
T ss_dssp             EEEETTT-------------------TEEEEEEECCSSCEEEEEECSSSS-CEEEEETTTEEEEECCT
T ss_pred             EEEECCC-------------------CcEEEEEeCCCCCEEEEEECCCCC-EEEEEECCCeEEEEECC
Confidence            9999998                   888999999999999999999997 89999999999999985

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.5e-36  Score=250.04  Aligned_cols=290  Identities=16%  Similarity=0.151  Sum_probs=206.8

Q ss_pred             eeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccc-cceEEeeecCC--CCceEEEEeecCCcceEEEE
Q 019059           20 SDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHP-NEIWDLSSCPF--DQRIFSTVFSTGESYGAAIW   96 (346)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~--~~~l~~~~~~~~~d~~i~vw   96 (346)
                      ..+.+++++.+++++.   +....++.|+...... .....+.+|. ..|++++|+|+  +.+|++    ++.|++|+||
T Consensus        21 t~l~~~~~~~~la~~~---~~~~~i~~~~~~~~~~-~~~~~~~gh~~~~v~~v~fsP~~~g~~las----gs~Dg~i~iW   92 (325)
T d1pgua1          21 THLSYDPTTNAIAYPC---GKSAFVRCLDDGDSKV-PPVVQFTGHGSSVVTTVKFSPIKGSQYLCS----GDESGKVIVW   92 (325)
T ss_dssp             CCCEEETTTTEEEEEE---TTEEEEEECCSSCCSS-CSEEEECTTTTSCEEEEEECSSTTCCEEEE----EETTSEEEEE
T ss_pred             EEEEECCCCCEEEEEe---CCCEEEEEEeCCCCCc-cceEEEeCCCCCCEEEEEEeeCCCCCEEEE----EeCCCCEEEe
Confidence            3456777888888763   1212233333222222 2335566775 68999999984  345544    4799999999


Q ss_pred             ecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEE-ecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEE
Q 019059           97 QIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS-IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGA  175 (346)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~  175 (346)
                      |+...... ..........+..|.++|.+++|+++++.+++++ +.++.+.+|+.++++....     ..+|...+.+++
T Consensus        93 d~~~~~~~-~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~h~~~v~~~~  166 (325)
T d1pgua1          93 GWTFDKES-NSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGE-----VSGHSQRINACH  166 (325)
T ss_dssp             EEEEEGGG-TEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEE-----CCSCSSCEEEEE
T ss_pred             eecCCcce-eeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeeccccccee-----eeeccccccccc
Confidence            98632110 0011222234567889999999999999755544 4578899999987653322     235677999999


Q ss_pred             eCCCCCc-EEEEecCCeEEEEEccCCCccceeec--cc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeec
Q 019059          176 WDPHDVN-AVAATCESSVQFWDLRSMGKTNSIEH--AH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP  249 (346)
Q Consensus       176 ~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~--~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  249 (346)
                      |+|+++. +++++.|+.+++||++..+.......  .+   |.+++|+|++..++++++.|+.|++||+++ .+.+..+.
T Consensus       167 ~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~-~~~~~~l~  245 (325)
T d1pgua1         167 LKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS-GEFLKYIE  245 (325)
T ss_dssp             ECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTT-CCEEEECC
T ss_pred             ccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecc-cccccccc
Confidence            9999887 56677899999999987765554432  23   999999998655899999999999999997 55788898


Q ss_pred             CCCcceEEEEeC---CCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccce--eeEEEeCC
Q 019059          250 GHTHWTWAVCCN---PEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDS--VYGLAWSS  324 (346)
Q Consensus       250 ~~~~~v~~v~~~---~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~  324 (346)
                      +|..++..+.|+   |++ .+|++++.|+.|+|||+++                   ++++..+..|...  +..+++.+
T Consensus       246 ~~~~~v~~~~~s~~~~dg-~~l~s~s~D~~i~iwd~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~  305 (325)
T d1pgua1         246 DDQEPVQGGIFALSWLDS-QKFATVGADATIRVWDVTT-------------------SKCVQKWTLDKQQLGNQQVGVVA  305 (325)
T ss_dssp             BTTBCCCSCEEEEEESSS-SEEEEEETTSEEEEEETTT-------------------TEEEEEEECCTTCGGGCEEEEEE
T ss_pred             ccccccccceeeeeccCC-CEEEEEeCCCeEEEEECCC-------------------CCEEEEEEecCCcccCeEEEEEE
Confidence            888888766665   678 8999999999999999998                   7777766555432  33444443


Q ss_pred             CCCcEEEEeecCCeEEEeee
Q 019059          325 REPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       325 ~~~~~l~s~~~d~~v~vw~~  344 (346)
                      .+...|++++.||.|++|||
T Consensus       306 ~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         306 TGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EETTEEEEEETTSCEEEEET
T ss_pred             CCCCEEEEEECCCEEEEEEC
Confidence            33237899999999999996

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.2e-34  Score=245.35  Aligned_cols=256  Identities=14%  Similarity=0.194  Sum_probs=193.6

Q ss_pred             eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeee------------------eeccC
Q 019059           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAA------------------LDAHV  120 (346)
Q Consensus        59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~------------------~~~~~  120 (346)
                      ....+|.+.|++++|+|+|++|+++     .|+.|+|||+.+         ++.+..                  ...|.
T Consensus        56 ~~~~~H~~~V~~l~fs~dg~~lasg-----~d~~i~iW~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (388)
T d1erja_          56 HKSLDHTSVVCCVKFSNDGEYLATG-----CNKTTQVYRVSD---------GSLVARLSDDSAANKDPENLNTSSSPSSD  121 (388)
T ss_dssp             EEEEECSSCCCEEEECTTSSEEEEE-----CBSCEEEEETTT---------CCEEEEECC-----------------CCC
T ss_pred             EeeCCCCCcEEEEEECCCCCEEEEE-----eCCeEEEEEecc---------cceEeeecccccccccccccccccccCCC
Confidence            3445799999999999999877663     488999999972         333222                  23567


Q ss_pred             CceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCC
Q 019059          121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSM  200 (346)
Q Consensus       121 ~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  200 (346)
                      ..|.+++|+|+++. +++++.|+.|++||...++....     ..+|...|.++.|++++..+++++.++.+++||.++.
T Consensus       122 ~~V~~l~~s~~~~~-l~s~~~dg~v~i~~~~~~~~~~~-----~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  195 (388)
T d1erja_         122 LYIRSVCFSPDGKF-LATGAEDRLIRIWDIENRKIVMI-----LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG  195 (388)
T ss_dssp             CBEEEEEECTTSSE-EEEEETTSCEEEEETTTTEEEEE-----ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             CCEEEEEECCCCCc-ceecccccccccccccccccccc-----cccccccccccccccccccccccccceeeeeeecccc
Confidence            78999999999984 77778999999999986543222     2356779999999999999999999999999999988


Q ss_pred             Cccceeeccc-eeEEEeCC-CCCcEEEEecCCCeEEEEEcccCCcceee-------ecCCCcceEEEEeCCCCCcEEEEe
Q 019059          201 GKTNSIEHAH-VRNVDYDT-KKKHLLVTAADESGIHLWDLRMLKAPIQE-------LPGHTHWTWAVCCNPEYDGFILSA  271 (346)
Q Consensus       201 ~~~~~~~~~~-v~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~~v~~v~~~~~~~~~l~s~  271 (346)
                      .......... ..++.+.+ ++. +|++++.|+.|++||.++.. .+..       ..+|...|.+++|+|++ .+|+++
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~i~~~~~~~-~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~  272 (388)
T d1erja_         196 QCSLTLSIEDGVTTVAVSPGDGK-YIAAGSLDRAVRVWDSETGF-LVERLDSENESGTGHKDSVYSVVFTRDG-QSVVSG  272 (388)
T ss_dssp             EEEEEEECSSCEEEEEECSTTCC-EEEEEETTSCEEEEETTTCC-EEEEEC------CCCSSCEEEEEECTTS-SEEEEE
T ss_pred             ccccccccccccccccccCCCCC-eEEEEcCCCeEEEeecccCc-cceeeccccccccCCCCCEEEEEECCCC-CEEEEE
Confidence            7766655333 55555655 555 89999999999999998633 3333       34688999999999999 999999


Q ss_pred             cCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          272 GTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       272 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      +.|+.|++||++.........       .............|...|.+++|+|+++ +|++++.||.|++||++
T Consensus       273 ~~d~~i~iwd~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~sg~~dg~i~vwd~~  338 (388)
T d1erja_         273 SLDRSVKLWNLQNANNKSDSK-------TPNSGTCEVTYIGHKDFVLSVATTQNDE-YILSGSKDRGVLFWDKK  338 (388)
T ss_dssp             ETTSEEEEEEC----------------------CEEEEEECCSSCEEEEEECGGGC-EEEEEETTSEEEEEETT
T ss_pred             ECCCcEEEEeccCCccccccc-------cccccceeeecccccceEEEEEECCCCC-EEEEEeCCCEEEEEECC
Confidence            999999999998732211100       0011334455567888999999999997 89999999999999975

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-32  Score=229.50  Aligned_cols=249  Identities=13%  Similarity=0.172  Sum_probs=193.8

Q ss_pred             cceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeecc-CCceEEEEeecCCC-CcEEEEecCC
Q 019059           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH-VGKINCVLWWSSGR-HDKLVSIDEE  143 (346)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~-~~~~~~~~d~  143 (346)
                      +.+.+++|+|++..++.+.   +....|+.|+..       .........+.+| ...|++++|+|+.. .++++++.||
T Consensus        18 ~~~t~l~~~~~~~~la~~~---~~~~~i~~~~~~-------~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg   87 (325)
T d1pgua1          18 NFTTHLSYDPTTNAIAYPC---GKSAFVRCLDDG-------DSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESG   87 (325)
T ss_dssp             TCCCCCEEETTTTEEEEEE---TTEEEEEECCSS-------CCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTS
T ss_pred             CCeEEEEECCCCCEEEEEe---CCCEEEEEEeCC-------CCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCC
Confidence            3567899999999888763   555567777754       1233555667777 46899999998543 2355568899


Q ss_pred             eEEEEEcCCCCCCceeeec---ccCCCceeeEEEEeCCCCCcEEEEec--CCeEEEEEccCCCccceeeccc---eeEEE
Q 019059          144 NIFLWSLDCSNKNAQVQSK---QSSGMLHYLSGGAWDPHDVNAVAATC--ESSVQFWDLRSMGKTNSIEHAH---VRNVD  215 (346)
Q Consensus       144 ~i~vwd~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~---v~~~~  215 (346)
                      .|++||+............   ....+..+|.+++|+++++.+++++.  ++.+++|+..+++.+..+. +|   +.+++
T Consensus        88 ~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~  166 (325)
T d1pgua1          88 KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVS-GHSQRINACH  166 (325)
T ss_dssp             EEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECC-SCSSCEEEEE
T ss_pred             CEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeee-eccccccccc
Confidence            9999999765543333221   12345668999999999999888764  6789999999998887776 44   99999


Q ss_pred             eCCCCCcEEEEecCCCeEEEEEcccCCc--ceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcc
Q 019059          216 YDTKKKHLLVTAADESGIHLWDLRMLKA--PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSE  293 (346)
Q Consensus       216 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  293 (346)
                      |+|+++.++++++.|+.+++||.+..+.  ....+..|...|.+++|+|++..+|++++.|+.|++||+++         
T Consensus       167 ~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~---------  237 (325)
T d1pgua1         167 LKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS---------  237 (325)
T ss_dssp             ECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTT---------
T ss_pred             ccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecc---------
Confidence            9999986788899999999999875332  22234567788999999998658999999999999999998         


Q ss_pred             cccCCccccccccccccccccceeeEEEeC---CCCCcEEEEeecCCeEEEeeec
Q 019059          294 SLVESPNQRANSLLNSYSDYEDSVYGLAWS---SREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                                ++.+..+.+|..++.++.|+   |+++ +|++++.|+.|+|||++
T Consensus       238 ----------~~~~~~l~~~~~~v~~~~~s~~~~dg~-~l~s~s~D~~i~iwd~~  281 (325)
T d1pgua1         238 ----------GEFLKYIEDDQEPVQGGIFALSWLDSQ-KFATVGADATIRVWDVT  281 (325)
T ss_dssp             ----------CCEEEECCBTTBCCCSCEEEEEESSSS-EEEEEETTSEEEEEETT
T ss_pred             ----------ccccccccccccccccceeeeeccCCC-EEEEEeCCCeEEEEECC
Confidence                      78888888888877766665   6776 89999999999999986

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.1e-31  Score=224.84  Aligned_cols=251  Identities=12%  Similarity=0.192  Sum_probs=198.5

Q ss_pred             cccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCc
Q 019059           11 GLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGES   90 (346)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d   90 (346)
                      .|+.+...|.++.+++++..|+.|.    .++.|.+|++....   ....+..|...|.+++|+|++..++++    +.|
T Consensus        50 tL~GH~~~I~~l~~s~~~~~l~sgs----~Dg~v~iWd~~~~~---~~~~~~~~~~~v~~v~~~~~~~~l~~~----~~d  118 (340)
T d1tbga_          50 TLRGHLAKIYAMHWGTDSRLLVSAS----QDGKLIIWDSYTTN---KVHAIPLRSSWVMTCAYAPSGNYVACG----GLD  118 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEE----TTTEEEEEETTTTE---EEEEEECSCSCEEEEEECTTSSEEEEE----ETT
T ss_pred             EECCCCCCEEEEEECCCCCEEEEEE----CCCceeeeecccce---eEEEEecccccEEeeEeeccceeeeee----ccc
Confidence            3455667788999999999898874    68999999887642   335667899999999999999988885    689


Q ss_pred             ceEEEEecCcccCCCC------------------------------------CccceeeeeeeccCCceEEEEeecCCCC
Q 019059           91 YGAAIWQIPELYGQLN------------------------------------SPQLERIAALDAHVGKINCVLWWSSGRH  134 (346)
Q Consensus        91 ~~i~vw~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~  134 (346)
                      +.+.+|+.........                                    ............+...+....+.+.+. 
T Consensus       119 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  197 (340)
T d1tbga_         119 NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR-  197 (340)
T ss_dssp             CCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSS-
T ss_pred             ceeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccc-
Confidence            9999999763311100                                    000111112233455667777777777 


Q ss_pred             cEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc----
Q 019059          135 DKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH----  210 (346)
Q Consensus       135 ~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~----  210 (346)
                      ++++++.|+.|++||+++++....+     .+|...|.+++|+|+++.+++++.|+.|++||++.......+....    
T Consensus       198 ~~~~~~~d~~v~i~d~~~~~~~~~~-----~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~  272 (340)
T d1tbga_         198 LFVSGACDASAKLWDVREGMCRQTF-----TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG  272 (340)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEE-----CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSC
T ss_pred             eeEEeecCceEEEEECCCCcEEEEE-----eCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCc
Confidence            4677788999999999876433222     3467799999999999999999999999999999888766554222    


Q ss_pred             eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEe
Q 019059          211 VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWL  281 (346)
Q Consensus       211 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd  281 (346)
                      +.+++|+|++. +|++|+.||.|++||+++ ..++..+.+|..+|++++|+|++ .+|++|+.||.|+|||
T Consensus       273 i~~~~~s~~~~-~l~~g~~dg~i~iwd~~~-~~~~~~~~~H~~~V~~l~~s~d~-~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         273 ITSVSFSKSGR-LLLAGYDDFNCNVWDALK-ADRAGVLAGHDNRVSCLGVTDDG-MAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEEEECSSSC-EEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTS-SCEEEEETTSCEEEEC
T ss_pred             eEEEEECCCCC-EEEEEECCCEEEEEECCC-CcEEEEEcCCCCCEEEEEEeCCC-CEEEEEccCCEEEEeC
Confidence            99999999998 899999999999999997 56889999999999999999999 9999999999999997

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.9e-32  Score=222.24  Aligned_cols=273  Identities=12%  Similarity=0.149  Sum_probs=205.5

Q ss_pred             CcceeeecccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEE
Q 019059            4 GSSGIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFST   83 (346)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~   83 (346)
                      |....+..|..+...|.++.+++    |+.|    +.++.|.+|++..        ...+|...|.+++++++. .++++
T Consensus         1 g~~~~i~~l~gH~~~I~~l~~s~----l~sg----s~Dg~v~~Wd~~~--------~~~~h~~~V~~~~~~~~~-~~~s~   63 (287)
T d1pgua2           1 GHDEVLKTISGHNKGITALTVNP----LISG----SYDGRIMEWSSSS--------MHQDHSNLIVSLDNSKAQ-EYSSI   63 (287)
T ss_dssp             TEEEEEEEECCCSSCEEEEETTT----TEEE----ETTSCEEETTTTE--------EECCCCSCEEEEECCSTT-CCEEE
T ss_pred             CCcceeEEECCCCCceEEEEECc----EEEE----eCCCeEEEEECCC--------CCCCCCCCEEEEEecCCC-eEEEE
Confidence            34567778888888888888865    5554    4678888886543        234788999999998754 55554


Q ss_pred             EeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecc
Q 019059           84 VFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQ  163 (346)
Q Consensus        84 ~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~  163 (346)
                          +.|+++++|++.         ..       .....+.++.+++++.  +++.+.++.+.+|+..++........  
T Consensus        64 ----s~D~~v~~w~~~---------~~-------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--  119 (287)
T d1pgua2          64 ----SWDDTLKVNGIT---------KH-------EFGSQPKVASANNDGF--TAVLTNDDDLLILQSFTGDIIKSVRL--  119 (287)
T ss_dssp             ----ETTTEEEETTEE---------EE-------ECSSCEEEEEECSSSE--EEEEETTSEEEEEETTTCCEEEEEEC--
T ss_pred             ----eecccccccccc---------cc-------ccccceeeeeeccCCc--eEEEeecccceeeeccceeeeeeccc--
Confidence                588899999876         21       1234567788888876  45555677888898876654333221  


Q ss_pred             cCCCceeeEEEEeCCCCCcEEEEecC-CeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcc
Q 019059          164 SSGMLHYLSGGAWDPHDVNAVAATCE-SSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLR  239 (346)
Q Consensus       164 ~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  239 (346)
                            .....++++++..+++++.+ +.+++|++...+....+...+   +++++|+|++. +|++|+.||.|++||+.
T Consensus       120 ------~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~i~d~~  192 (287)
T d1pgua2         120 ------NSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSET-YIAAGDVMGKILLYDLQ  192 (287)
T ss_dssp             ------SSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETT
T ss_pred             ------cceeeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCcc-ccccccccccccceeec
Confidence                  11233566677888888876 479999998766555444333   99999999998 89999999999999998


Q ss_pred             cCCcceeeecCCCcceEEEEeCCCC---------CcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccc
Q 019059          240 MLKAPIQELPGHTHWTWAVCCNPEY---------DGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSY  310 (346)
Q Consensus       240 ~~~~~~~~~~~~~~~v~~v~~~~~~---------~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (346)
                      +.......+..|...|.+++|+|.+         ..+|++|+.|++|+|||++.                  ..+.+..+
T Consensus       193 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~------------------~~~~~~~~  254 (287)
T d1pgua2         193 SREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR------------------PMKIIKAL  254 (287)
T ss_dssp             TTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSC------------------TTCCEEET
T ss_pred             ccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCC------------------CCeEEEEe
Confidence            7444445577899999999998854         26899999999999999976                  25567778


Q ss_pred             ccccceeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059          311 SDYEDSVYGLAWSSREPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       311 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~  344 (346)
                      .+|...|++++|+|++  .|++++.|+.|++|++
T Consensus       255 ~~h~~~V~~v~~~~~~--~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         255 NAHKDGVNNLLWETPS--TLVSSGADACIKRWNV  286 (287)
T ss_dssp             TSSTTCEEEEEEEETT--EEEEEETTSCEEEEEE
T ss_pred             CCCCCCeEEEEECCCC--EEEEEECCCeEEEEEE
Confidence            8999999999999976  5889999999999996

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-31  Score=223.00  Aligned_cols=241  Identities=15%  Similarity=0.275  Sum_probs=184.2

Q ss_pred             EeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEE
Q 019059           58 CEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKL  137 (346)
Q Consensus        58 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  137 (346)
                      ...+.+|.+.|.+ ++++++++|+++    +.|++|+|||+.         ++++++++.+|...|.+++|+++   +++
T Consensus         9 ~~~l~GH~~~V~s-~~~~~g~~l~sg----s~Dg~i~vWd~~---------~~~~~~~~~~h~~~V~~v~~~~~---~l~   71 (342)
T d2ovrb2           9 PKVLKGHDDHVIT-CLQFCGNRIVSG----SDDNTLKVWSAV---------TGKCLRTLVGHTGGVWSSQMRDN---III   71 (342)
T ss_dssp             CEEEECSTTSCEE-EEEEETTEEEEE----ETTSCEEEEETT---------TCCEEEECCCCSSCEEEEEEETT---EEE
T ss_pred             CEEECCcCCceEE-EEEECCCEEEEE----eCCCeEEEEECC---------CCCEEEEEeCCCCCEEEEEeCCC---ccc
Confidence            3567799999865 466678888774    689999999998         77889999999999999999874   477


Q ss_pred             EEecCCeEEEEEcCCCCCCceee---------------------------------------------------------
Q 019059          138 VSIDEENIFLWSLDCSNKNAQVQ---------------------------------------------------------  160 (346)
Q Consensus       138 ~~~~d~~i~vwd~~~~~~~~~~~---------------------------------------------------------  160 (346)
                      +++.|+.+++|+...........                                                         
T Consensus        72 s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (342)
T d2ovrb2          72 SGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVV  151 (342)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEE
T ss_pred             cceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceee
Confidence            77889999999876431100000                                                         


Q ss_pred             ------------------ecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCC
Q 019059          161 ------------------SKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTK  219 (346)
Q Consensus       161 ------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~  219 (346)
                                        .....+|...+  ..+.+++..+++++.|+.|++||++.++.+..+. .|   +.++++++ 
T Consensus       152 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~~-  227 (342)
T d2ovrb2         152 SGAYDFMVKVWDPETETCLHTLQGHTNRV--YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLT-GHQSLTSGMELKD-  227 (342)
T ss_dssp             EEETTSCEEEEEGGGTEEEEEECCCSSCE--EEEEECSSEEEEEETTSCEEEEETTTCCEEEEEC-CCCSCEEEEEEET-
T ss_pred             eecCCCeEEEeecccceeeEEEcCccccc--ccccCCCCEEEEEeCCCeEEEeecccceeeeEec-ccccceeEEecCC-
Confidence                              00001122222  2344567889999999999999999998887766 44   88887765 


Q ss_pred             CCcEEEEecCCCeEEEEEcccCCcceeeec---CCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCccccc
Q 019059          220 KKHLLVTAADESGIHLWDLRMLKAPIQELP---GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLV  296 (346)
Q Consensus       220 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  296 (346)
                       + ++++++.|+.|++||+... .....+.   .|...+.++.+++   .++++|+.||+|++||+++            
T Consensus       228 -~-~l~s~s~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~s~Dg~i~iwd~~t------------  289 (342)
T d2ovrb2         228 -N-ILVSGNADSTVKIWDIKTG-QCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKT------------  289 (342)
T ss_dssp             -T-EEEEEETTSCEEEEETTTC-CEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTT------------
T ss_pred             -C-EEEEEcCCCEEEEEecccc-cccccccccceeeeceeecccCC---CeeEEEcCCCEEEEEECCC------------
Confidence             4 8999999999999999873 3455554   3566777777765   6899999999999999998            


Q ss_pred             CCcccccccccccc-----ccccceeeEEEeCCCCCcEEEEeecCCe----EEEeeec
Q 019059          297 ESPNQRANSLLNSY-----SDYEDSVYGLAWSSREPWIFASLSYDGR----VRNHMLE  345 (346)
Q Consensus       297 ~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~s~~~d~~----v~vw~~~  345 (346)
                             ++++..+     .+|...|++++|+|++. +|++|+.||+    |++||++
T Consensus       290 -------g~~i~~~~~~~~~~~~~~v~~v~~s~~~~-~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         290 -------GEFIRNLVTLESGGSGGVVWRIRASNTKL-VCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             -------CCEEEEEEECTTGGGTCEEEEEEECSSEE-EEEEECSSSSSCCEEEEEECC
T ss_pred             -------CCEEEEEecccCCCCCCCEEEEEECCCCC-EEEEEeCCCCCeeEEEEEeCC
Confidence                   6766654     35778899999999986 8999998885    9999986

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.8e-31  Score=221.89  Aligned_cols=243  Identities=14%  Similarity=0.183  Sum_probs=192.0

Q ss_pred             Eeeeeccccce-EEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcE
Q 019059           58 CEGLFSHPNEI-WDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDK  136 (346)
Q Consensus        58 ~~~~~~h~~~v-~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  136 (346)
                      ..++.+|.+.| +|++|  ++++|+++    +.|++|+|||+.         +.+++.++.+|.+.|.+++|+|++  .+
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~l~tg----s~Dg~i~vWd~~---------~~~~~~~l~~H~~~V~~l~~s~~~--~l   67 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNYVITG----ADDKMIRVYDSI---------NKKFLLQLSGHDGGVWALKYAHGG--IL   67 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEE----ETTTEEEEEETT---------TTEEEEEEECCSSCEEEEEEETTT--EE
T ss_pred             cEEECCcCCCcEEEEEE--CCCEEEEE----eCCCeEEEEECC---------CCcEEEEEECCCCCEEEEEEcCCC--EE
Confidence            35678999876 55555  56777764    699999999998         788999999999999999999865  37


Q ss_pred             EEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeec--------
Q 019059          137 LVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH--------  208 (346)
Q Consensus       137 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--------  208 (346)
                      ++++.|+.|++|++...........   ..+........+.+++..+++++.|+.|++||+++.........        
T Consensus        68 ~s~s~D~~i~iw~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~  144 (355)
T d1nexb2          68 VSGSTDRTVRVWDIKKGCCTHVFEG---HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVF  144 (355)
T ss_dssp             EEEETTCCEEEEETTTTEEEEEECC---CSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEE
T ss_pred             EEEeccccccccccccccccccccc---ccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccce
Confidence            8888999999999986543322222   22334566677888899999999999999999987654322211        


Q ss_pred             --------------cc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecC
Q 019059          209 --------------AH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGT  273 (346)
Q Consensus       209 --------------~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~  273 (346)
                                    .+ .....+.+++. +++++..|+.|++||+++ .+.+....++...+.++.|+|++ .++++++.
T Consensus       145 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  221 (355)
T d1nexb2         145 HTPEENPYFVGVLRGHMASVRTVSGHGN-IVVSGSYDNTLIVWDVAQ-MKCLYILSGHTDRIYSTIYDHER-KRCISASM  221 (355)
T ss_dssp             SCTTTCTTEEEEEECCSSCEEEEEEETT-EEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEEETTT-TEEEEEET
T ss_pred             eccccccceeeeeeeccccccccccccc-eeeeecccceeeeeeccc-ccceeeeeccccccccccccccc-eeeecccc
Confidence                          11 11233445666 889999999999999987 55777888889999999999999 99999999


Q ss_pred             CCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          274 DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       274 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      |+.|++||+++                   +.++..+.+|...|.+++|++  + +|++++.||.|++||++
T Consensus       222 d~~i~i~d~~~-------------------~~~~~~~~~h~~~v~~~~~~~--~-~l~~~~~dg~i~iwd~~  271 (355)
T d1nexb2         222 DTTIRIWDLEN-------------------GELMYTLQGHTALVGLLRLSD--K-FLVSAAADGSIRGWDAN  271 (355)
T ss_dssp             TSCEEEEETTT-------------------CCEEEEECCCSSCCCEEEECS--S-EEEEECTTSEEEEEETT
T ss_pred             cceEEeeeccc-------------------ccccccccccccccccccccc--c-eeeeeeccccccccccc
Confidence            99999999998                   888889999999999999975  3 79999999999999975

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.4e-31  Score=221.55  Aligned_cols=266  Identities=14%  Similarity=0.261  Sum_probs=193.8

Q ss_pred             CcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCC
Q 019059           27 DHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLN  106 (346)
Q Consensus        27 ~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~  106 (346)
                      ++..++.|    +.++.|.+|++...   .....+.+|.+.|.+++|+|+ ..|+++    +.|+.|++|++.       
T Consensus        22 ~~~~l~tg----s~Dg~i~vWd~~~~---~~~~~l~~H~~~V~~l~~s~~-~~l~s~----s~D~~i~iw~~~-------   82 (355)
T d1nexb2          22 EDNYVITG----ADDKMIRVYDSINK---KFLLQLSGHDGGVWALKYAHG-GILVSG----STDRTVRVWDIK-------   82 (355)
T ss_dssp             ETTEEEEE----ETTTEEEEEETTTT---EEEEEEECCSSCEEEEEEETT-TEEEEE----ETTCCEEEEETT-------
T ss_pred             CCCEEEEE----eCCCeEEEEECCCC---cEEEEEECCCCCEEEEEEcCC-CEEEEE----eccccccccccc-------
Confidence            45567776    36899999988653   234677899999999999985 466664    699999999998       


Q ss_pred             Cccceeeeeeec--cCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCcee-------------------------
Q 019059          107 SPQLERIAALDA--HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQV-------------------------  159 (346)
Q Consensus       107 ~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~-------------------------  159 (346)
                        ..........  +........+.+++. .+++++.|+.|++||+.+.......                         
T Consensus        83 --~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (355)
T d1nexb2          83 --KGCCTHVFEGHNSTVRCLDIVEYKNIK-YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG  159 (355)
T ss_dssp             --TTEEEEEECCCSSCEEEEEEEEETTEE-EEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEEC
T ss_pred             --ccccccccccccccccccccccccccc-eeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeee
Confidence              3343333322  233445566677766 3666678899999988654211000                         


Q ss_pred             ---------------e------------------ecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCcccee
Q 019059          160 ---------------Q------------------SKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSI  206 (346)
Q Consensus       160 ---------------~------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  206 (346)
                                     .                  .....++...+..+.|+|++..+++++.|+.|++||++++..+..+
T Consensus       160 ~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~  239 (355)
T d1nexb2         160 HMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL  239 (355)
T ss_dssp             CSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             ccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccc
Confidence                           0                  0001234446677889999999999999999999999999888777


Q ss_pred             eccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEE-eCCCCCcEEEEecCCCeEEEEec
Q 019059          207 EHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVC-CNPEYDGFILSAGTDSTVNLWLV  282 (346)
Q Consensus       207 ~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~-~~~~~~~~l~s~~~d~~i~iwd~  282 (346)
                      . +|   |.++++++  + .+++++.||.|++||+++..   ..+..|...+.++. +++++ .+|++|+ |+.|+|||+
T Consensus       240 ~-~h~~~v~~~~~~~--~-~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~-~~l~~g~-d~~i~vwd~  310 (355)
T d1nexb2         240 Q-GHTALVGLLRLSD--K-FLVSAAADGSIRGWDANDYS---RKFSYHHTNLSAITTFYVSD-NILVSGS-ENQFNIYNL  310 (355)
T ss_dssp             C-CCSSCCCEEEECS--S-EEEEECTTSEEEEEETTTCC---EEEEEECTTCCCCCEEEECS-SEEEEEE-TTEEEEEET
T ss_pred             c-ccccccccccccc--c-eeeeeecccccccccccccc---eecccccCCceEEEEEcCCC-CEEEEEe-CCEEEEEEC
Confidence            6 55   99999975  3 79999999999999998633   34455666666655 45666 7666664 899999999


Q ss_pred             CCCCCCCCCcccccCCcccccccccc-ccccccceeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059          283 STSNHDELPSESLVESPNQRANSLLN-SYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~  344 (346)
                      ++                   ++++. .+.+|...|++++|+|+  .++++++.||+++||-+
T Consensus       311 ~t-------------------g~~~~~~~~~~~~~V~~v~~~~~--~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         311 RS-------------------GKLVHANILKDADQIWSVNFKGK--TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             TT-------------------CCBCCSCTTTTCSEEEEEEEETT--EEEEEEESSSCEEEEEE
T ss_pred             CC-------------------CCEEEEEecCCCCCEEEEEEcCC--eEEEEEECCCcEEEEEE
Confidence            98                   77764 56789999999999986  38889999999877754

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=1.2e-30  Score=217.94  Aligned_cols=294  Identities=9%  Similarity=0.043  Sum_probs=210.6

Q ss_pred             ccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcc
Q 019059           12 LKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESY   91 (346)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~   91 (346)
                      ++-+...|.++.++|++..|++|+    .++.|++|++.............+|.++|.+++|+|++..++++   ++.|+
T Consensus         7 ~~~h~d~I~~l~fsp~~~~L~s~s----~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~s---g~~d~   79 (342)
T d1yfqa_           7 EQAPKDYISDIKIIPSKSLLLITS----WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYV---GTVQG   79 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEE----TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEE---EETTS
T ss_pred             CCCCCCCEEEEEEeCCCCEEEEEE----CCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEE---ccccc
Confidence            344556788999999999998874    58999999998877766667777899999999999987766555   47999


Q ss_pred             eEEEEecCcccCCCCCccceeeeeeeccCCce-EEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeeccc-CCCce
Q 019059           92 GAAIWQIPELYGQLNSPQLERIAALDAHVGKI-NCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQS-SGMLH  169 (346)
Q Consensus        92 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~  169 (346)
                      .|++|++.         ..........+...+ ....+.++.. .+++++.++.+++||++............. .....
T Consensus        80 ~v~~w~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~  149 (342)
T d1yfqa_          80 EILKVDLI---------GSPSFQALTNNEANLGICRICKYGDD-KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKV  149 (342)
T ss_dssp             CEEEECSS---------SSSSEEECBSCCCCSCEEEEEEETTT-EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSS
T ss_pred             ceeeeecc---------cccccccccccccccccccccccccc-cccccccccccceeeccccccceeeecccccccccc
Confidence            99999998         333334444444433 3444444444 577778899999999976544433332221 11122


Q ss_pred             eeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeec--cc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcc
Q 019059          170 YLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH--AH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAP  244 (346)
Q Consensus       170 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  244 (346)
                      ......+.+.+..+++++.|+.|++||++..+.......  ..   +.+..+.+.....+++++.||.+.+|+.......
T Consensus       150 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~  229 (342)
T d1yfqa_         150 KNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDD  229 (342)
T ss_dssp             CCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCS
T ss_pred             eeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcce
Confidence            344556677788899999999999999998775543321  11   5666665555448999999999999997643211


Q ss_pred             --------------eeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccc
Q 019059          245 --------------IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSY  310 (346)
Q Consensus       245 --------------~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (346)
                                    ......|...+++++|+|++ .+|++|+.||.|++||+++                   ++.+..+
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~-~~lasg~~Dg~v~vWD~~~-------------------~~~l~~~  289 (342)
T d1yfqa_         230 YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIISCWNLQT-------------------RKKIKNF  289 (342)
T ss_dssp             TTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT-CCEEEEETTSCEEEEETTT-------------------TEEEEEC
T ss_pred             eeccccceeeeeeeccCCCcccccceeEEecCCc-cEEEEECCCCEEEEEECCC-------------------CcEEEEe
Confidence                          11123566789999999999 9999999999999999998                   7777777


Q ss_pred             ccccceeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059          311 SDYEDSVYGLAWSSREPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       311 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~  344 (346)
                      ..+. .+..++|+|+++ ++++++.|..+++|..
T Consensus       290 ~~~~-~~~~~~~s~~~~-~l~~a~sdd~~~~~~~  321 (342)
T d1yfqa_         290 AKFN-EDSVVKIACSDN-ILCLATSDDTFKTNAA  321 (342)
T ss_dssp             CCCS-SSEEEEEEECSS-EEEEEEECTHHHHCSS
T ss_pred             cCCC-CCEEEEEEeCCC-EEEEEEcCCcEEEeee
Confidence            5432 245577778887 7888888887766643

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=9.6e-31  Score=224.24  Aligned_cols=268  Identities=13%  Similarity=0.168  Sum_probs=175.3

Q ss_pred             eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEE------eecCC
Q 019059           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVL------WWSSG  132 (346)
Q Consensus        59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~------~~~~~  132 (346)
                      ....+|.+.|.++++++  ++++++    +.|++|+|||.......  . ..........|...+..+.      .+...
T Consensus         8 ~~~~~H~~~I~~v~~~~--~~l~S~----S~D~~iriWd~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACN--SFTVSC----SGDGYLKVWDNKLLDNE--N-PKDKSYSHFVHKSGLHHVDVLQAIERDAFE   78 (393)
T ss_dssp             EESSCSSSCEEEEEECS--SEEEEE----ETTSEEEEEESBCCTTC--C-GGGGEEEEECCTTCEEEEEEEEEEETTTEE
T ss_pred             ecCCcccCccEEEEEeC--CEEEEE----ECCCeEEEEECCCCCCC--c-ccceeEeeeeccCCceEeeeEeeeccCCCC
Confidence            34468999999999875  567765    68999999997632111  1 1112222234444333222      22222


Q ss_pred             CCcEEEEecCCeEEEEEcCCCCCCceeeecc-----cCCCceeeEEEEeCCCC-----CcEEEEecCCeEEEEEccCCCc
Q 019059          133 RHDKLVSIDEENIFLWSLDCSNKNAQVQSKQ-----SSGMLHYLSGGAWDPHD-----VNAVAATCESSVQFWDLRSMGK  202 (346)
Q Consensus       133 ~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~-----~~l~~~~~d~~i~i~d~~~~~~  202 (346)
                      ..++++++.|+.|++|++.............     ...+...+..++|.++.     .++++++.|+.+++||+.....
T Consensus        79 ~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~  158 (393)
T d1sq9a_          79 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD  158 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred             CcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCc
Confidence            2234455789999999987655443333211     12233456777777653     5678888999999999864321


Q ss_pred             c-----------ce----ee--ccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCccee------eecCCCcceE
Q 019059          203 T-----------NS----IE--HAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQ------ELPGHTHWTW  256 (346)
Q Consensus       203 ~-----------~~----~~--~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~------~~~~~~~~v~  256 (346)
                      .           ..    ..  ..+   +.+++|+|++  +|++|+.|++|++||+++ .+++.      .+.+|..+|+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~-~~~~~~~~~~~~l~~h~~~V~  235 (393)
T d1sq9a_         159 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELST-LRPLYNFESQHSMINNSNSIR  235 (393)
T ss_dssp             HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTT-TEEEEEEECCC---CCCCCEE
T ss_pred             ccceeeeeeccceecccceecccCCCCcEEEEEECCCC--EEEEEeCCCcEEEEeecc-cccccccccccccccccceEE
Confidence            0           00    00  011   8899999987  789999999999999987 33433      4457899999


Q ss_pred             EEEeCCCCCcEEEEecCCC---eEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEe
Q 019059          257 AVCCNPEYDGFILSAGTDS---TVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASL  333 (346)
Q Consensus       257 ~v~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  333 (346)
                      +++|+|++ .+|++|+.|+   .|++||++++....      ..............+.+|.+.|++++|+|+++ +|+++
T Consensus       236 ~l~~spdg-~~l~sgs~D~t~~~i~lwd~~~g~~~~------~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~-~l~S~  307 (393)
T d1sq9a_         236 SVKFSPQG-SLLAIAHDSNSFGCITLYETEFGERIG------SLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE-TLCSA  307 (393)
T ss_dssp             EEEECSST-TEEEEEEEETTEEEEEEEETTTCCEEE------EECBC--------CCBSBSSCEEEEEECSSSS-EEEEE
T ss_pred             Eccccccc-ceeeeecCCCCcceeeecccccceeee------eeccccccccceeeeecccCceeeeccCCCCC-eeEEE
Confidence            99999999 9999999987   49999998721100      00000011233344568999999999999997 99999


Q ss_pred             ecCCeEEEeeecC
Q 019059          334 SYDGRVRNHMLEK  346 (346)
Q Consensus       334 ~~d~~v~vw~~~~  346 (346)
                      +.|++|++||+++
T Consensus       308 s~D~~v~vWd~~~  320 (393)
T d1sq9a_         308 GWDGKLRFWDVKT  320 (393)
T ss_dssp             ETTSEEEEEETTT
T ss_pred             CCCCEEEEEECCC
Confidence            9999999999863

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.2e-29  Score=207.54  Aligned_cols=245  Identities=17%  Similarity=0.291  Sum_probs=183.9

Q ss_pred             eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEE
Q 019059           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV  138 (346)
Q Consensus        59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  138 (346)
                      ....+|...|+|++|  ++++|+++    +.|++|+|||+.         +.+++.++.+|.+.|.+++|+  ++ ++++
T Consensus         9 ~~~~~~~~~V~c~~~--d~~~l~sg----s~Dg~i~vWd~~---------~~~~~~~l~~H~~~V~~v~~~--~~-~l~s   70 (293)
T d1p22a2           9 HCRSETSKGVYCLQY--DDQKIVSG----LRDNTIKIWDKN---------TLECKRILTGHTGSVLCLQYD--ER-VIIT   70 (293)
T ss_dssp             ECCCSSCCCEEEEEC--CSSEEEEE----ESSSCEEEEESS---------SCCEEEEECCCSSCEEEEECC--SS-EEEE
T ss_pred             eccCCCCCCEEEEEE--cCCEEEEE----eCCCeEEEEECC---------CCcEEEEEecCCCCEeeeecc--cc-eeec
Confidence            334568889998765  67777774    799999999998         788899999999999999884  44 4777


Q ss_pred             EecCCeEEEEEcCCCCCCceeee--------------------------------------cccCCCceeeEEEEeCCCC
Q 019059          139 SIDEENIFLWSLDCSNKNAQVQS--------------------------------------KQSSGMLHYLSGGAWDPHD  180 (346)
Q Consensus       139 ~~~d~~i~vwd~~~~~~~~~~~~--------------------------------------~~~~~~~~~v~~~~~~~~~  180 (346)
                      ++.|+.|++|++..+........                                      .....|...+..+.+.  .
T Consensus        71 ~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~  148 (293)
T d1p22a2          71 GSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--D  148 (293)
T ss_dssp             EETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--T
T ss_pred             ccccccccccccccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceec--c
Confidence            88999999999876532111100                                      0012233344444443  3


Q ss_pred             CcEEEEecCCeEEEEEccCCCccceeeccc--eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEE
Q 019059          181 VNAVAATCESSVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAV  258 (346)
Q Consensus       181 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v  258 (346)
                      ..+++++.|+.+++||+++++.+..+....  +..+.++  +. .+++++.|+.|++||+++ ...+..+..|...+..+
T Consensus       149 ~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~~  224 (293)
T d1p22a2         149 KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DR-LVVSGSSDNTIRLWDIEC-GACLRVLEGHEELVRCI  224 (293)
T ss_dssp             TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TT-EEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEE
T ss_pred             cccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CC-eEEEecCCCEEEEEeccc-ceeeeeecccceeeeec
Confidence            567788899999999999999888776333  7777765  34 789999999999999997 55788888888888764


Q ss_pred             EeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCe
Q 019059          259 CCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGR  338 (346)
Q Consensus       259 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~  338 (346)
                        ++++ .+|++++.||.|++||+........          .....++..+.+|.+.|++++|++  . +|++++.|++
T Consensus       225 --~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~----------~~~~~~~~~~~~H~~~V~~v~~d~--~-~l~s~s~Dg~  288 (293)
T d1p22a2         225 --RFDN-KRIVSGAYDGKIKVWDLVAALDPRA----------PAGTLCLRTLVEHSGRVFRLQFDE--F-QIVSSSHDDT  288 (293)
T ss_dssp             --ECCS-SEEEEEETTSCEEEEEHHHHTSTTS----------CTTTTEEEEECCCSSCCCCEEECS--S-CEEECCSSSE
T ss_pred             --cccc-eEEEEEcCCCEEEEEECCCCccccc----------cCCceeeEEecCCCCCEEEEEEcC--C-EEEEEecCCE
Confidence              4566 8899999999999999875211110          011345677889999999999964  3 7999999999


Q ss_pred             EEEee
Q 019059          339 VRNHM  343 (346)
Q Consensus       339 v~vw~  343 (346)
                      |++||
T Consensus       289 i~iWD  293 (293)
T d1p22a2         289 ILIWD  293 (293)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99997

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.3e-29  Score=211.58  Aligned_cols=267  Identities=13%  Similarity=0.084  Sum_probs=187.0

Q ss_pred             eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEE
Q 019059           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV  138 (346)
Q Consensus        59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  138 (346)
                      ....+|.+.|++|+|+|++++|+++    +.|++|+|||++...      ....+.....|..+|.+++|+|++..++++
T Consensus         5 ~~~~~h~d~I~~l~fsp~~~~L~s~----s~Dg~v~iwd~~~~~------~~~~~~~~~~h~~~V~~v~f~~~~~~~l~s   74 (342)
T d1yfqa_           5 QIEQAPKDYISDIKIIPSKSLLLIT----SWDGSLTVYKFDIQA------KNVDLLQSLRYKHPLLCCNFIDNTDLQIYV   74 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGTEEEEE----ETTSEEEEEEEETTT------TEEEEEEEEECSSCEEEEEEEESSSEEEEE
T ss_pred             EcCCCCCCCEEEEEEeCCCCEEEEE----ECCCeEEEEEccCCC------cceEEEEecCCCCCEEEEEEeCCCCCEEEE
Confidence            4556899999999999999988885    689999999987210      112233334799999999999987766777


Q ss_pred             EecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeec---cc-----
Q 019059          139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH---AH-----  210 (346)
Q Consensus       139 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~-----  210 (346)
                      ++.|+.|++|++............    +........+.++...+++++.++.+++||++.+........   .+     
T Consensus        75 g~~d~~v~~w~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~  150 (342)
T d1yfqa_          75 GTVQGEILKVDLIGSPSFQALTNN----EANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVK  150 (342)
T ss_dssp             EETTSCEEEECSSSSSSEEECBSC----CCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSC
T ss_pred             cccccceeeeeccccccccccccc----ccccccccccccccccccccccccccceeeccccccceeeecccccccccce
Confidence            789999999999866543332221    222334455666778899999999999999987654433321   11     


Q ss_pred             eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcc--eeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCC
Q 019059          211 VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAP--IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHD  288 (346)
Q Consensus       211 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  288 (346)
                      ...+.+.+.+. .+++++.|+.|++||++.....  ......+...+.+..+.+.....+++++.||.+.+|+.......
T Consensus       151 ~~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~  229 (342)
T d1yfqa_         151 NKIFTMDTNSS-RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDD  229 (342)
T ss_dssp             CCEEEEEECSS-EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCS
T ss_pred             eeeeeeeccCC-ceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcce
Confidence            45566777777 8899999999999999864322  22233445556666666554489999999999999998763221


Q ss_pred             CCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          289 ELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      .........    ...........|...|++++|+|+++ +|++|+.||.|++||++
T Consensus       230 ~~~~~~~~~----~~~~~~~~~~~~~~~v~~l~~sp~~~-~lasg~~Dg~v~vWD~~  281 (342)
T d1yfqa_         230 YNSSKRFAF----RCHRLNLKDTNLAYPVNSIEFSPRHK-FLYTAGSDGIISCWNLQ  281 (342)
T ss_dssp             TTCTTCEEE----ECCCCCTTCCSSCCCEEEEEECTTTC-CEEEEETTSCEEEEETT
T ss_pred             eecccccee----eeeeeccCCCcccccceeEEecCCcc-EEEEECCCCEEEEEECC
Confidence            111100000    00112233446777899999999997 89999999999999986

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.1e-29  Score=217.50  Aligned_cols=280  Identities=15%  Similarity=0.205  Sum_probs=186.4

Q ss_pred             CCCCeEEEEEecCCCC---eEEEeeeeccccceEE------eeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCcc
Q 019059           39 KEENEVHLLRLSSGGT---ELICEGLFSHPNEIWD------LSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQ  109 (346)
Q Consensus        39 ~~~~~i~~~~~~~~~~---~~~~~~~~~h~~~v~~------~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~  109 (346)
                      +.++.+++|+......   .........|...+..      +...+....++++   ++.|+.|++|++......... .
T Consensus        31 S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---~~~dg~v~~w~~~~~~~~~~~-~  106 (393)
T d1sq9a_          31 SGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT---TSFSGDLLFYRITREDETKKV-I  106 (393)
T ss_dssp             ETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE---EETTSCEEEEEEEECTTTCCE-E
T ss_pred             ECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEE---EeCCCcEEEEEccCCCceeee-e
Confidence            4689999998654321   1111222334443332      2223323334443   478999999998632111100 0


Q ss_pred             ceee--eeeeccCCceEEEEeecCCC----CcEEEEecCCeEEEEEcCCCCCCc-------------eeeecccCCCcee
Q 019059          110 LERI--AALDAHVGKINCVLWWSSGR----HDKLVSIDEENIFLWSLDCSNKNA-------------QVQSKQSSGMLHY  170 (346)
Q Consensus       110 ~~~~--~~~~~~~~~i~~~~~~~~~~----~~~~~~~~d~~i~vwd~~~~~~~~-------------~~~~~~~~~~~~~  170 (346)
                      ....  .....+...+..++|.++..    ..+++++.|+.+++|++.......             .........+...
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (393)
T d1sq9a_         107 FEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQF  186 (393)
T ss_dssp             EEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCC
T ss_pred             ccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCc
Confidence            0011  11123456678888887643    235666889999999986432110             0111112234446


Q ss_pred             eEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeec-----cc---eeEEEeCCCCCcEEEEecCCC---eEEEEEcc
Q 019059          171 LSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH-----AH---VRNVDYDTKKKHLLVTAADES---GIHLWDLR  239 (346)
Q Consensus       171 v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-----~~---v~~~~~~~~~~~~l~~~~~dg---~i~i~d~~  239 (346)
                      +.+++|+|++ .+++++.|+.|++||+++++++..+..     +|   |++++|+|+++ +|++|+.|+   .|++||++
T Consensus       187 ~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~-~l~sgs~D~t~~~i~lwd~~  264 (393)
T d1sq9a_         187 ATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS-LLAIAHDSNSFGCITLYETE  264 (393)
T ss_dssp             CCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT-EEEEEEEETTEEEEEEEETT
T ss_pred             EEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccc-eeeeecCCCCcceeeecccc
Confidence            8899999987 788999999999999999887665542     34   99999999998 899998886   49999998


Q ss_pred             cCCcceeee-------------cCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccc
Q 019059          240 MLKAPIQEL-------------PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSL  306 (346)
Q Consensus       240 ~~~~~~~~~-------------~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  306 (346)
                      . ...+..+             .+|...|++++|+|++ ++|++++.|++|+|||+++                   +++
T Consensus       265 ~-g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~-~~l~S~s~D~~v~vWd~~~-------------------g~~  323 (393)
T d1sq9a_         265 F-GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG-ETLCSAGWDGKLRFWDVKT-------------------KER  323 (393)
T ss_dssp             T-CCEEEEECBC--------CCBSBSSCEEEEEECSSS-SEEEEEETTSEEEEEETTT-------------------TEE
T ss_pred             c-ceeeeeeccccccccceeeeecccCceeeeccCCCC-CeeEEECCCCEEEEEECCC-------------------CCE
Confidence            6 3344443             4799999999999999 9999999999999999998                   777


Q ss_pred             ccccccccce---------------------eeEEEeCCCCC---------cEEEEeecCCeEEEeeec
Q 019059          307 LNSYSDYEDS---------------------VYGLAWSSREP---------WIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       307 ~~~~~~~~~~---------------------v~~~~~~~~~~---------~~l~s~~~d~~v~vw~~~  345 (346)
                      +.++.+|...                     +.++.|.+.+.         ..+++++.|+.|++|...
T Consensus       324 ~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~~~  392 (393)
T d1sq9a_         324 ITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA  392 (393)
T ss_dssp             EEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred             EEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEEcCCeEEEEeCC
Confidence            7777776544                     34555544321         147888899999999754

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.8e-28  Score=200.85  Aligned_cols=230  Identities=10%  Similarity=0.092  Sum_probs=176.8

Q ss_pred             EEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcE
Q 019059           57 ICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDK  136 (346)
Q Consensus        57 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  136 (346)
                      ..+.+.+|.++|++++|+|    |+++    +.|++|++||+.         ..     ...|...|.++++++++.  +
T Consensus         5 ~i~~l~gH~~~I~~l~~s~----l~sg----s~Dg~v~~Wd~~---------~~-----~~~h~~~V~~~~~~~~~~--~   60 (287)
T d1pgua2           5 VLKTISGHNKGITALTVNP----LISG----SYDGRIMEWSSS---------SM-----HQDHSNLIVSLDNSKAQE--Y   60 (287)
T ss_dssp             EEEEECCCSSCEEEEETTT----TEEE----ETTSCEEETTTT---------EE-----ECCCCSCEEEEECCSTTC--C
T ss_pred             eeEEECCCCCceEEEEECc----EEEE----eCCCeEEEEECC---------CC-----CCCCCCCEEEEEecCCCe--E
Confidence            4567889999999999987    6664    799999999987         32     247899999999997765  6


Q ss_pred             EEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccceeEEEe
Q 019059          137 LVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDY  216 (346)
Q Consensus       137 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~v~~~~~  216 (346)
                      ++++.|+.+++|++...+            ....+..+.+++++..+++ +.++.+.+|+..+++....+.... ...++
T Consensus        61 ~s~s~D~~v~~w~~~~~~------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  126 (287)
T d1pgua2          61 SSISWDDTLKVNGITKHE------------FGSQPKVASANNDGFTAVL-TNDDDLLILQSFTGDIIKSVRLNS-PGSAV  126 (287)
T ss_dssp             EEEETTTEEEETTEEEEE------------CSSCEEEEEECSSSEEEEE-ETTSEEEEEETTTCCEEEEEECSS-CEEEE
T ss_pred             EEEeeccccccccccccc------------cccceeeeeeccCCceEEE-eecccceeeeccceeeeeeccccc-eeeee
Confidence            778889999999986321            1125667788887665554 567779999999988877766333 33445


Q ss_pred             CCCCCcEEEEecCC-CeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccc
Q 019059          217 DTKKKHLLVTAADE-SGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESL  295 (346)
Q Consensus       217 ~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  295 (346)
                      ++++. .+++++.+ +.+++|++............|...+++++|+|++ .+|++|+.||.|++||+..           
T Consensus       127 ~~~~~-~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~i~d~~~-----------  193 (287)
T d1pgua2         127 SLSQN-YVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSE-TYIAAGDVMGKILLYDLQS-----------  193 (287)
T ss_dssp             EECSS-EEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTT-----------
T ss_pred             eccCc-ceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCc-cccccccccccccceeecc-----------
Confidence            66666 55555554 5799999876333333334577899999999999 9999999999999999987           


Q ss_pred             cCCcccccccc-ccccccccceeeEEEeCCCC---------CcEEEEeecCCeEEEeeec
Q 019059          296 VESPNQRANSL-LNSYSDYEDSVYGLAWSSRE---------PWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       296 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~---------~~~l~s~~~d~~v~vw~~~  345 (346)
                              ++. ...+.+|...|.+++|+|.+         ..+|++++.|++|++|+++
T Consensus       194 --------~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~  245 (287)
T d1pgua2         194 --------REVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK  245 (287)
T ss_dssp             --------TEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESS
T ss_pred             --------cccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECC
Confidence                    443 34567899999999999753         2379999999999999985

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.96  E-value=3e-29  Score=211.76  Aligned_cols=270  Identities=12%  Similarity=0.052  Sum_probs=192.5

Q ss_pred             CCC-CcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCccc
Q 019059           24 ADT-DHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELY  102 (346)
Q Consensus        24 ~~~-~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~  102 (346)
                      ++| ++..++.+.     .+++++|++...  ...  . .+|...|.+++|+|+++.|+++.  ...+..|++||++   
T Consensus        10 fSP~dG~~~a~~~-----~g~v~v~d~~~~--~~~--~-~~~~~~v~~~~~spDg~~l~~~~--~~~g~~v~v~d~~---   74 (360)
T d1k32a3          10 FSPLDGDLIAFVS-----RGQAFIQDVSGT--YVL--K-VPEPLRIRYVRRGGDTKVAFIHG--TREGDFLGIYDYR---   74 (360)
T ss_dssp             EEECGGGCEEEEE-----TTEEEEECTTSS--BEE--E-CSCCSCEEEEEECSSSEEEEEEE--ETTEEEEEEEETT---
T ss_pred             ccCCCCCEEEEEE-----CCeEEEEECCCC--cEE--E-ccCCCCEEEEEECCCCCEEEEEE--cCCCCEEEEEECC---
Confidence            566 788888763     478999977543  222  2 37999999999999999998863  2333579999987   


Q ss_pred             CCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCc
Q 019059          103 GQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVN  182 (346)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  182 (346)
                            .. ....+..|...|.+++|+|++++ +++++.++.+++|++.+++......     .+...+.+++|+|++++
T Consensus        75 ------~~-~~~~~~~~~~~v~~~~~spdg~~-l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~spdg~~  141 (360)
T d1k32a3          75 ------TG-KAEKFEENLGNVFAMGVDRNGKF-AVVANDRFEIMTVDLETGKPTVIER-----SREAMITDFTISDNSRF  141 (360)
T ss_dssp             ------TC-CEEECCCCCCSEEEEEECTTSSE-EEEEETTSEEEEEETTTCCEEEEEE-----CSSSCCCCEEECTTSCE
T ss_pred             ------CC-cEEEeeCCCceEEeeeecccccc-cceeccccccccccccccceeeeee-----cccccccchhhccceee
Confidence                  33 34566789999999999999995 6677789999999998765433222     24447889999999999


Q ss_pred             EEEEec----------CCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCc------ce
Q 019059          183 AVAATC----------ESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA------PI  245 (346)
Q Consensus       183 l~~~~~----------d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------~~  245 (346)
                      |+.+..          ++.+++||+.+++......... +..++|+|+|+ .|++++.++.+++||......      ..
T Consensus       142 la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~~s~~~~~~~~d~~~~~~~~~~~~~~  220 (360)
T d1k32a3         142 IAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSK-NLYYLSYRSLDPSPDRVVLNFSFEVVSKP  220 (360)
T ss_dssp             EEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSC-EEEEEESCCCCCEECSSSSCEECCSCBEE
T ss_pred             eeeeccccccceeeccccceeeeccccCceeeecccccccccccccCCCC-EEEEEeCCCceEcccccccceeeccccce
Confidence            986642          3569999999887655444333 88999999998 888899999999998643210      00


Q ss_pred             eeecC----------------------------------------------CCcceEEEEeCCCCC--cEEEEecCCCeE
Q 019059          246 QELPG----------------------------------------------HTHWTWAVCCNPEYD--GFILSAGTDSTV  277 (346)
Q Consensus       246 ~~~~~----------------------------------------------~~~~v~~v~~~~~~~--~~l~s~~~d~~i  277 (346)
                      ..+..                                              +...+..+.+.+.++  .++++++.++.|
T Consensus       221 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  300 (360)
T d1k32a3         221 FVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVL  300 (360)
T ss_dssp             EEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEE
T ss_pred             EEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEE
Confidence            00100                                              111111222222221  245566678899


Q ss_pred             EEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeecC
Q 019059          278 NLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLEK  346 (346)
Q Consensus       278 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~~  346 (346)
                      ++||+.+                   ++.    ..|.+.|.+++|+|||+ .|++++.||.|++|++++
T Consensus       301 ~~~d~~~-------------------~~~----~~~~~~v~~~~~SpDG~-~l~~~~~Dg~i~v~d~~~  345 (360)
T d1k32a3         301 LKYDVKT-------------------RKV----TEVKNNLTDLRLSADRK-TVMVRKDDGKIYTFPLEK  345 (360)
T ss_dssp             EEEETTT-------------------CCE----EEEEEEEEEEEECTTSC-EEEEEETTSCEEEEESSC
T ss_pred             EEEECCC-------------------CeE----EEecCCcCEEEECCCCC-EEEEEECCCeEEEEECCC
Confidence            9999887                   332    23456699999999998 889999999999999864

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.95  E-value=7.8e-25  Score=179.82  Aligned_cols=261  Identities=13%  Similarity=0.121  Sum_probs=197.4

Q ss_pred             CCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeec
Q 019059           39 KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA  118 (346)
Q Consensus        39 ~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~  118 (346)
                      ..++.|.+|++...  .+. ..+ .....+..++|+|++++|+++   ++.++.|++||+.         +.+.+..+..
T Consensus         9 ~~~~~v~v~D~~t~--~~~-~~i-~~g~~p~~va~spdG~~l~v~---~~~~~~i~v~d~~---------t~~~~~~~~~   72 (301)
T d1l0qa2           9 SESDNISVIDVTSN--KVT-ATI-PVGSNPMGAVISPDGTKVYVA---NAHSNDVSIIDTA---------TNNVIATVPA   72 (301)
T ss_dssp             TTTTEEEEEETTTT--EEE-EEE-ECSSSEEEEEECTTSSEEEEE---EGGGTEEEEEETT---------TTEEEEEEEC
T ss_pred             CCCCEEEEEECCCC--eEE-EEE-ECCCCceEEEEeCCCCEEEEE---ECCCCEEEEEECC---------CCceeeeeec
Confidence            46788999987664  222 222 344567899999999998765   3678899999998         6778888876


Q ss_pred             cCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEe-cCCeEEEEEc
Q 019059          119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT-CESSVQFWDL  197 (346)
Q Consensus       119 ~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~  197 (346)
                      +. .+..+.|++++..+++++..++.+.+|+..+++....+..      ......+.|+|++..++.++ .++.+.+|+.
T Consensus        73 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~  145 (301)
T d1l0qa2          73 GS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT------GKSPLGLALSPDGKKLYVTNNGDKTVSVINT  145 (301)
T ss_dssp             SS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC------SSSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             cc-cccccccccccccccccccccceeeecccccceeeeeccc------cccceEEEeecCCCeeeeeeccccceeeeec
Confidence            65 4689999999997666666789999999987653333322      22567899999999887665 5788999999


Q ss_pred             cCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEec---C
Q 019059          198 RSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG---T  273 (346)
Q Consensus       198 ~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~---~  273 (346)
                      .+.+....+.... +..++++|++..++++...++.+.+|+... ......+. ....+..++|++++ ..++.++   .
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~g-~~~~v~~~~~~  222 (301)
T d1l0qa2         146 VTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVT-NSVIDTVK-VEAAPSGIAVNPEG-TKAYVTNVDKY  222 (301)
T ss_dssp             TTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEE-CSSEEEEEEECTTS-SEEEEEEECSS
T ss_pred             cccceeeecccCCCceEEEeeccccceeeecccccccccccccc-eeeeeccc-ccCCcceeeccccc-cccccccccce
Confidence            9998888777555 899999999985555555667788888765 43444444 44567889999999 6555443   3


Q ss_pred             CCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          274 DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       274 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      ++.|++||+.+                   ++.+..+..+. .+.+++|+|+|++++++++.|+.|++||++
T Consensus       223 ~~~v~v~D~~t-------------------~~~~~~~~~~~-~~~~va~spdg~~l~va~~~~~~i~v~D~~  274 (301)
T d1l0qa2         223 FNTVSMIDTGT-------------------NKITARIPVGP-DPAGIAVTPDGKKVYVALSFCNTVSVIDTA  274 (301)
T ss_dssp             CCEEEEEETTT-------------------TEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             eeeeeeeecCC-------------------CeEEEEEcCCC-CEEEEEEeCCCCEEEEEECCCCeEEEEECC
Confidence            57899999998                   77777665544 479999999998666888899999999975

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.94  E-value=8.9e-25  Score=188.76  Aligned_cols=272  Identities=8%  Similarity=0.034  Sum_probs=185.4

Q ss_pred             CCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceee---ee
Q 019059           39 KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERI---AA  115 (346)
Q Consensus        39 ~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~---~~  115 (346)
                      ..++.|.+|++...+   ....+..| ..+..++|+|||++++++    +.|+.|++||+..       .+....   ..
T Consensus        39 ~~dg~v~vwD~~t~~---~~~~l~~g-~~~~~vafSPDGk~l~~~----~~d~~v~vwd~~t-------~~~~~~~~i~~  103 (426)
T d1hzua2          39 RDAGQIALVDGDSKK---IVKVIDTG-YAVHISRMSASGRYLLVI----GRDARIDMIDLWA-------KEPTKVAEIKI  103 (426)
T ss_dssp             TTTTEEEEEETTTCS---EEEEEECC-SSEEEEEECTTSCEEEEE----ETTSEEEEEETTS-------SSCEEEEEEEC
T ss_pred             cCCCEEEEEECCCCc---EEEEEeCC-CCeeEEEECCCCCEEEEE----eCCCCEEEEEccC-------CceeEEEEEeC
Confidence            478999999887642   22444444 468999999999998875    5789999999972       122222   22


Q ss_pred             eeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeeccc------CCCceeeEEEEeCCCCCcEEEEec-
Q 019059          116 LDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQS------SGMLHYLSGGAWDPHDVNAVAATC-  188 (346)
Q Consensus       116 ~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~-  188 (346)
                      ...|...+.+++|+|||+++++++..++.+.+||..+............      ..+......+.+++++..++.... 
T Consensus       104 ~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~  183 (426)
T d1hzua2         104 GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE  183 (426)
T ss_dssp             CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred             CCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCC
Confidence            3356677788889999997666667899999999987654332221110      011223456677777777666554 


Q ss_pred             CCeEEEEEccCCCccc--eeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCC-----------------------
Q 019059          189 ESSVQFWDLRSMGKTN--SIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK-----------------------  242 (346)
Q Consensus       189 d~~i~i~d~~~~~~~~--~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------------------  242 (346)
                      .+.+.+++........  .+..+. +..++|+|++++++++...+..+.+++.....                       
T Consensus       184 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (426)
T d1hzua2         184 TGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPK  263 (426)
T ss_dssp             TTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETT
T ss_pred             CCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCC
Confidence            4667777776655433  223233 88999999998555555555566666544211                       


Q ss_pred             ------------------------------cceeeecCCCcceEEEEeCCCCCcEEE-------EecCCCeEEEEecCCC
Q 019059          243 ------------------------------APIQELPGHTHWTWAVCCNPEYDGFIL-------SAGTDSTVNLWLVSTS  285 (346)
Q Consensus       243 ------------------------------~~~~~~~~~~~~v~~v~~~~~~~~~l~-------s~~~d~~i~iwd~~~~  285 (346)
                                                    +....+.+|...+..++|+|++ .+|+       +++.|++|+|||+.+ 
T Consensus       264 ~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg-~~l~v~~~~~~s~~~~~tv~vwd~~t-  341 (426)
T d1hzua2         264 YGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKS-SHLYVDTTFNPDARISQSVAVFDLKN-  341 (426)
T ss_dssp             TEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTC-SEEEECCTTCSSHHHHTCEEEEETTC-
T ss_pred             CCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCC-ceEEEeecCCCCcccCCEEEEEECCC-
Confidence                                          1234566788889999999999 8888       456789999999988 


Q ss_pred             CCCCCCcccccCCccccccccccc---------cccccceeeEEEeCCCCCcEEEEe----ecCCeEEEeeec
Q 019059          286 NHDELPSESLVESPNQRANSLLNS---------YSDYEDSVYGLAWSSREPWIFASL----SYDGRVRNHMLE  345 (346)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~v~~~~~~~~~~~~l~s~----~~d~~v~vw~~~  345 (346)
                                        ++...+         +..|...|..++|||||+++++++    +.++.|+|||..
T Consensus       342 ------------------~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~  396 (426)
T d1hzua2         342 ------------------LDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDK  396 (426)
T ss_dssp             ------------------TTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETT
T ss_pred             ------------------CCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECC
Confidence                              433332         334556699999999998666664    468889999964

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.5e-25  Score=185.59  Aligned_cols=200  Identities=18%  Similarity=0.280  Sum_probs=149.8

Q ss_pred             cceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec
Q 019059          109 QLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC  188 (346)
Q Consensus       109 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  188 (346)
                      +.++.+.+++|.+.|.+ +++++|++ +++++.|+.|++||+.+++....     ..+|...|.+++|+|+  .+++++.
T Consensus         5 ~~~~~~~l~GH~~~V~s-~~~~~g~~-l~sgs~Dg~i~vWd~~~~~~~~~-----~~~h~~~V~~v~~~~~--~l~s~s~   75 (342)
T d2ovrb2           5 ELKSPKVLKGHDDHVIT-CLQFCGNR-IVSGSDDNTLKVWSAVTGKCLRT-----LVGHTGGVWSSQMRDN--IIISGST   75 (342)
T ss_dssp             CCCCCEEEECSTTSCEE-EEEEETTE-EEEEETTSCEEEEETTTCCEEEE-----CCCCSSCEEEEEEETT--EEEEEET
T ss_pred             CCCcCEEECCcCCceEE-EEEECCCE-EEEEeCCCeEEEEECCCCCEEEE-----EeCCCCCEEEEEeCCC--cccccee
Confidence            56777889999998865 46667874 77788999999999987654322     3457779999999874  7888888


Q ss_pred             CCeEEEEEccCCCcc-----------------------------------------------------------------
Q 019059          189 ESSVQFWDLRSMGKT-----------------------------------------------------------------  203 (346)
Q Consensus       189 d~~i~i~d~~~~~~~-----------------------------------------------------------------  203 (346)
                      |+.+++|+.......                                                                 
T Consensus        76 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (342)
T d2ovrb2          76 DRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAY  155 (342)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEET
T ss_pred             cccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecC
Confidence            888888876532110                                                                 


Q ss_pred             ---------------ceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcE
Q 019059          204 ---------------NSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGF  267 (346)
Q Consensus       204 ---------------~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~  267 (346)
                                     ..+. +| .....+.+++. .+++++.||.|++||++. ..++..+..|...+.++.+++   .+
T Consensus       156 d~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~-~l~s~~~dg~i~~~d~~~-~~~~~~~~~~~~~v~~~~~~~---~~  229 (342)
T d2ovrb2         156 DFMVKVWDPETETCLHTLQ-GHTNRVYSLQFDGI-HVVSGSLDTSIRVWDVET-GNCIHTLTGHQSLTSGMELKD---NI  229 (342)
T ss_dssp             TSCEEEEEGGGTEEEEEEC-CCSSCEEEEEECSS-EEEEEETTSCEEEEETTT-CCEEEEECCCCSCEEEEEEET---TE
T ss_pred             CCeEEEeecccceeeEEEc-CcccccccccCCCC-EEEEEeCCCeEEEeeccc-ceeeeEecccccceeEEecCC---CE
Confidence                           0000 11 22333444565 789999999999999997 557888999999999888765   68


Q ss_pred             EEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccc---ccccceeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059          268 ILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSY---SDYEDSVYGLAWSSREPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       268 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~  344 (346)
                      |++++.|+.|++||+..                   .+....+   ..|...+.++.+++  . ++++++.||.|++||+
T Consensus       230 l~s~s~d~~i~iwd~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~s~s~Dg~i~iwd~  287 (342)
T d2ovrb2         230 LVSGNADSTVKIWDIKT-------------------GQCLQTLQGPNKHQSAVTCLQFNK--N-FVITSSDDGTVKLWDL  287 (342)
T ss_dssp             EEEEETTSCEEEEETTT-------------------CCEEEEECSTTSCSSCEEEEEECS--S-EEEEEETTSEEEEEET
T ss_pred             EEEEcCCCEEEEEeccc-------------------ccccccccccceeeeceeecccCC--C-eeEEEcCCCEEEEEEC
Confidence            99999999999999987                   4443333   34666788888875  3 8899999999999998


Q ss_pred             c
Q 019059          345 E  345 (346)
Q Consensus       345 ~  345 (346)
                      +
T Consensus       288 ~  288 (342)
T d2ovrb2         288 K  288 (342)
T ss_dssp             T
T ss_pred             C
Confidence            5

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.1e-23  Score=171.64  Aligned_cols=238  Identities=15%  Similarity=0.229  Sum_probs=170.2

Q ss_pred             cceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcce
Q 019059           13 KYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYG   92 (346)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~   92 (346)
                      ....+.|.++.+  ++.+++.|    +.++.|.+|++...+   ....+.+|.+.|.+++|.  ++.|+++    +.|+.
T Consensus        12 ~~~~~~V~c~~~--d~~~l~sg----s~Dg~i~vWd~~~~~---~~~~l~~H~~~V~~v~~~--~~~l~s~----s~D~~   76 (293)
T d1p22a2          12 SETSKGVYCLQY--DDQKIVSG----LRDNTIKIWDKNTLE---CKRILTGHTGSVLCLQYD--ERVIITG----SSDST   76 (293)
T ss_dssp             CSSCCCEEEEEC--CSSEEEEE----ESSSCEEEEESSSCC---EEEEECCCSSCEEEEECC--SSEEEEE----ETTSC
T ss_pred             CCCCCCEEEEEE--cCCEEEEE----eCCCeEEEEECCCCc---EEEEEecCCCCEeeeecc--cceeecc----ccccc
Confidence            334455665554  56678777    468999999987643   346677899999999884  5566664    69999


Q ss_pred             EEEEecCcccCC----------------------------------CCCccceeeeeeeccCCceEEEEeecCCCCcEEE
Q 019059           93 AAIWQIPELYGQ----------------------------------LNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV  138 (346)
Q Consensus        93 i~vw~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  138 (346)
                      |++|++......                                  ...........+..|...+..+.+.+.   .+++
T Consensus        77 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~  153 (293)
T d1p22a2          77 VRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK---YIVS  153 (293)
T ss_dssp             EEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETT---EEEE
T ss_pred             ccccccccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceeccc---cccc
Confidence            999998643110                                  000111222334556777777776654   2566


Q ss_pred             EecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc--eeEEEe
Q 019059          139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--VRNVDY  216 (346)
Q Consensus       139 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--v~~~~~  216 (346)
                      ++.|+.|++||+.+.+....+.     ++...+..+.++  +..+++++.|+.|++||+++.+.+.......  +..  +
T Consensus       154 ~s~d~~i~~~d~~~~~~~~~~~-----~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~  224 (293)
T d1p22a2         154 ASGDRTIKVWNTSTCEFVRTLN-----GHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--I  224 (293)
T ss_dssp             EETTSEEEEEETTTCCEEEEEE-----CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--E
T ss_pred             ccCCCceeeecCCCCcEEEEEc-----ccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeee--c
Confidence            6789999999998765433332     344467777665  5689999999999999999988877665222  554  4


Q ss_pred             CCCCCcEEEEecCCCeEEEEEcccCC--------cceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEe
Q 019059          217 DTKKKHLLVTAADESGIHLWDLRMLK--------APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWL  281 (346)
Q Consensus       217 ~~~~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd  281 (346)
                      .+++. .|++++.||.|++||++...        .++..+.+|...|++++|++   .+|++++.||+|+|||
T Consensus       225 ~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~---~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         225 RFDNK-RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE---FQIVSSSHDDTILIWD  293 (293)
T ss_dssp             ECCSS-EEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECS---SCEEECCSSSEEEEEC
T ss_pred             cccce-EEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEcC---CEEEEEecCCEEEEeC
Confidence            45565 89999999999999986421        24677889999999999954   6799999999999997

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.92  E-value=1.7e-24  Score=182.25  Aligned_cols=190  Identities=11%  Similarity=-0.001  Sum_probs=148.8

Q ss_pred             EeeecC-CCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecC-CeEEE
Q 019059           70 DLSSCP-FDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDE-ENIFL  147 (346)
Q Consensus        70 ~~~~~~-~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d-~~i~v  147 (346)
                      .-.||| +|+.++++     ..+.|.+||+.         ....+ .+ .|...|.+++|+|||+.+++++..+ ..|++
T Consensus         7 ~~~fSP~dG~~~a~~-----~~g~v~v~d~~---------~~~~~-~~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v   70 (360)
T d1k32a3           7 AEDFSPLDGDLIAFV-----SRGQAFIQDVS---------GTYVL-KV-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGI   70 (360)
T ss_dssp             EEEEEECGGGCEEEE-----ETTEEEEECTT---------SSBEE-EC-SCCSCEEEEEECSSSEEEEEEEETTEEEEEE
T ss_pred             cccccCCCCCEEEEE-----ECCeEEEEECC---------CCcEE-Ec-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEE
Confidence            457999 88888775     45799999987         33433 34 6899999999999999654555444 37999


Q ss_pred             EEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc--eeEEEeCCCCCcEEE
Q 019059          148 WSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKHLLV  225 (346)
Q Consensus       148 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~  225 (346)
                      ||++++.. ..     ...|...+.+++|+|+++++++++.++.+++|++.+++....+....  +.+++|+|+++ .|+
T Consensus        71 ~d~~~~~~-~~-----~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~-~la  143 (360)
T d1k32a3          71 YDYRTGKA-EK-----FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSR-FIA  143 (360)
T ss_dssp             EETTTCCE-EE-----CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSC-EEE
T ss_pred             EECCCCcE-EE-----eeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhcccee-eee
Confidence            99986542 11     22466689999999999999999999999999999988777665333  89999999998 555


Q ss_pred             Ee----------cCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCC
Q 019059          226 TA----------ADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTS  285 (346)
Q Consensus       226 ~~----------~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~  285 (346)
                      .+          ..++.+++||+.. + ....+..+...+..+.|+|+| ++|++++.|+.+++||....
T Consensus       144 ~~~~~~~~~~~~~~~~~~~v~d~~~-~-~~~~~~~~~~~~~~~~~spdg-~~l~~~s~~~~~~~~d~~~~  210 (360)
T d1k32a3         144 YGFPLKHGETDGYVMQAIHVYDMEG-R-KIFAATTENSHDYAPAFDADS-KNLYYLSYRSLDPSPDRVVL  210 (360)
T ss_dssp             EEEEECSSTTCSCCEEEEEEEETTT-T-EEEECSCSSSBEEEEEECTTS-CEEEEEESCCCCCEECSSSS
T ss_pred             eeccccccceeeccccceeeecccc-C-ceeeecccccccccccccCCC-CEEEEEeCCCceEccccccc
Confidence            33          3455799999986 3 344555677888999999999 99999999999999987653

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=2.3e-22  Score=167.41  Aligned_cols=275  Identities=13%  Similarity=0.179  Sum_probs=188.5

Q ss_pred             CCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeec
Q 019059           39 KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA  118 (346)
Q Consensus        39 ~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~  118 (346)
                      ..++.|++|++...+. +.......|.+.+..|+|+|||++|+++   +..|+.|++|++....     ...+.. ....
T Consensus        11 ~~~~~I~v~~~~~~~~-l~~~~~~~~~~~v~~la~spDG~~L~v~---~~~d~~i~~~~i~~~~-----~~~~~~-~~~~   80 (333)
T d1ri6a_          11 PESQQIHVWNLNHEGA-LTLTQVVDVPGQVQPMVVSPDKRYLYVG---VRPEFRVLAYRIAPDD-----GALTFA-AESA   80 (333)
T ss_dssp             GGGTEEEEEEECTTSC-EEEEEEEECSSCCCCEEECTTSSEEEEE---ETTTTEEEEEEECTTT-----CCEEEE-EEEE
T ss_pred             CCCCcEEEEEEcCCCC-eEEEEEEcCCCCEeEEEEeCCCCEEEEE---ECCCCeEEEEEEeCCC-----CcEEEe-eecc
Confidence            4678999999987543 3445556789999999999999999776   3678999999997210     011121 1223


Q ss_pred             cCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec-CCeEEEEEc
Q 019059          119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-ESSVQFWDL  197 (346)
Q Consensus       119 ~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~  197 (346)
                      +...+..++|+|||+++++++..++.|.+|+..............   +...+.++.++|+++.++.++. +..|.+|+.
T Consensus        81 ~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~  157 (333)
T d1ri6a_          81 LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE---GLDGCHSANISPDNRTLWVPALKQDRICLFTV  157 (333)
T ss_dssp             CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC---CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred             cCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccC---CCccceEEEeeecceeeeccccccceeeEEEe
Confidence            445678899999999755554558899999987654333322222   3336778899999999888874 568999998


Q ss_pred             cCCCccceee-------ccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCccee---eec------CCCcceEEEEe
Q 019059          198 RSMGKTNSIE-------HAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQ---ELP------GHTHWTWAVCC  260 (346)
Q Consensus       198 ~~~~~~~~~~-------~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~~------~~~~~v~~v~~  260 (346)
                      ..........       .+. +..++|++++...+.+....+...+++.........   .+.      ........+++
T Consensus       158 ~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (333)
T d1ri6a_         158 SDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHI  237 (333)
T ss_dssp             CTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEE
T ss_pred             ccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEE
Confidence            8765433221       112 789999999986666666777888888764332221   111      12345677889


Q ss_pred             CCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccc---ccccceeeEEEeCCCCCcEEEEeecCC
Q 019059          261 NPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSY---SDYEDSVYGLAWSSREPWIFASLSYDG  337 (346)
Q Consensus       261 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~s~~~d~  337 (346)
                      ++++..+++++..++.+.+|++..                   .......   ......+.+++|+|+|++++++++.++
T Consensus       238 s~d~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~  298 (333)
T d1ri6a_         238 TPDGRHLYACDRTASLITVFSVSE-------------------DGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSH  298 (333)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEECT-------------------TSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTC
T ss_pred             ecccCceeeecccCCeEEEEEEcC-------------------CCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCC
Confidence            999955556667788999999876                   2222222   123345788999999986666667789


Q ss_pred             eEEEeeec
Q 019059          338 RVRNHMLE  345 (346)
Q Consensus       338 ~v~vw~~~  345 (346)
                      .|++|+++
T Consensus       299 ~v~v~~id  306 (333)
T d1ri6a_         299 HISVYEIV  306 (333)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEEEE
Confidence            99999764

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=3.5e-23  Score=178.68  Aligned_cols=262  Identities=11%  Similarity=0.010  Sum_probs=180.9

Q ss_pred             EeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEE
Q 019059           70 DLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWS  149 (346)
Q Consensus        70 ~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd  149 (346)
                      .+.+.++.+.++++.  ...|+.|+|||+.         +++.+.++..|. .+..++|+|||++ +++++.|+.|++||
T Consensus        23 ~~~~~~d~~~~~~V~--~~~dg~v~vwD~~---------t~~~~~~l~~g~-~~~~vafSPDGk~-l~~~~~d~~v~vwd   89 (426)
T d1hzua2          23 KQLNDLDLPNLFSVT--LRDAGQIALVDGD---------SKKIVKVIDTGY-AVHISRMSASGRY-LLVIGRDARIDMID   89 (426)
T ss_dssp             SCCSCCCGGGEEEEE--ETTTTEEEEEETT---------TCSEEEEEECCS-SEEEEEECTTSCE-EEEEETTSEEEEEE
T ss_pred             cccccCCCCeEEEEE--EcCCCEEEEEECC---------CCcEEEEEeCCC-CeeEEEECCCCCE-EEEEeCCCCEEEEE
Confidence            345666666555443  4789999999998         788999998774 5899999999995 56667899999999


Q ss_pred             cCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEe-cCCeEEEEEccCCCccceeeccc-------------eeEEE
Q 019059          150 LDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT-CESSVQFWDLRSMGKTNSIEHAH-------------VRNVD  215 (346)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~-------------v~~~~  215 (346)
                      +.+++...........+|...+.+++|+|||+++++++ .++.+.+||..+++....+....             ...+.
T Consensus        90 ~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  169 (426)
T d1hzua2          90 LWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAII  169 (426)
T ss_dssp             TTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEE
T ss_pred             ccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEE
Confidence            99876544333333445666778889999999987665 68999999999987665443111             45566


Q ss_pred             eCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCC----
Q 019059          216 YDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELP----  291 (346)
Q Consensus       216 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~----  291 (346)
                      +++++..++.+....+.+.+++.............+...+..+.|+|++..++++...+..+.+++..........    
T Consensus       170 ~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  249 (426)
T d1hzua2         170 ASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK  249 (426)
T ss_dssp             ECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSS
T ss_pred             ECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCC
Confidence            6777764455555556676776655333333444677889999999999334444556678889988765210000    


Q ss_pred             ----cc---------------------------cccCCccccccccccccccccceeeEEEeCCCCCcEEE-------Ee
Q 019059          292 ----SE---------------------------SLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFA-------SL  333 (346)
Q Consensus       292 ----~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-------s~  333 (346)
                          ..                           ..........++....+.+|...+..++|+|+++ .|+       ++
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~-~l~v~~~~~~s~  328 (426)
T d1hzua2         250 TPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSS-HLYVDTTFNPDA  328 (426)
T ss_dssp             CCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCS-EEEECCTTCSSH
T ss_pred             cccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCc-eEEEeecCCCCc
Confidence                00                           0000001122355667788998999999999998 666       45


Q ss_pred             ecCCeEEEeeec
Q 019059          334 SYDGRVRNHMLE  345 (346)
Q Consensus       334 ~~d~~v~vw~~~  345 (346)
                      +.|++|+|||++
T Consensus       329 ~~~~tv~vwd~~  340 (426)
T d1hzua2         329 RISQSVAVFDLK  340 (426)
T ss_dssp             HHHTCEEEEETT
T ss_pred             ccCCEEEEEECC
Confidence            678999999975

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.91  E-value=6.5e-23  Score=170.80  Aligned_cols=226  Identities=11%  Similarity=0.104  Sum_probs=167.3

Q ss_pred             ceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeecc--CCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCC
Q 019059           79 RIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH--VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKN  156 (346)
Q Consensus        79 ~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~  156 (346)
                      +++++    +.|+.|.|||+.         +.+.+..+..+  ...+.+++|+|||++++++++.++.|.+||+.+++..
T Consensus         3 ~~vt~----~~d~~v~v~D~~---------s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~   69 (337)
T d1pbyb_           3 YILAP----ARPDKLVVIDTE---------KMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETL   69 (337)
T ss_dssp             EEEEE----ETTTEEEEEETT---------TTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEE
T ss_pred             EEEEE----cCCCEEEEEECC---------CCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEE
Confidence            45554    688999999998         67788777654  4567899999999975566677899999999987765


Q ss_pred             ceeeecccCCCceeeEEEEeCCCCCcEEEEec------------CCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcE
Q 019059          157 AQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC------------ESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHL  223 (346)
Q Consensus       157 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~  223 (346)
                      ..........+...+..++|+|+++.++++..            +..+.+||..+++....+.... +..++|+|++. .
T Consensus        70 ~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~-~  148 (337)
T d1pbyb_          70 GRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGS-K  148 (337)
T ss_dssp             EEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSS-C
T ss_pred             EEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCC-E
Confidence            55544333333445678999999999887763            5778999999998887777444 88999999998 6


Q ss_pred             EEEecCCCeEEEEEcccCCcce----------------------------------------------------------
Q 019059          224 LVTAADESGIHLWDLRMLKAPI----------------------------------------------------------  245 (346)
Q Consensus       224 l~~~~~dg~i~i~d~~~~~~~~----------------------------------------------------------  245 (346)
                      +++++.  .+.+||..... ..                                                          
T Consensus       149 l~~~~~--~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (337)
T d1pbyb_         149 LYGLGR--DLHVMDPEAGT-LVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMD  225 (337)
T ss_dssp             EEEESS--SEEEEETTTTE-EEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEE
T ss_pred             EEEEcC--CcceeeeecCc-EEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEE
Confidence            666654  35667765321 01                                                          


Q ss_pred             --------eeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccccccccee
Q 019059          246 --------QELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSV  317 (346)
Q Consensus       246 --------~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  317 (346)
                              ..+..+...+..+.++|++ .+++.+  ++.|++||+.+                   ++.+..+. +...+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~i~v~d~~~-------------------~~~~~~~~-~~~~~  282 (337)
T d1pbyb_         226 LETGEMAMREVRIMDVFYFSTAVNPAK-TRAFGA--YNVLESFDLEK-------------------NASIKRVP-LPHSY  282 (337)
T ss_dssp             TTTCCEEEEEEEECSSCEEEEEECTTS-SEEEEE--ESEEEEEETTT-------------------TEEEEEEE-CSSCC
T ss_pred             cCCCcEEEEEecCCCcceEEEEecccc-eEEEEc--cccEEEEECCC-------------------CcEEEEEc-CCCCE
Confidence                    0111233445566777777 666655  57899999998                   67776664 45568


Q ss_pred             eEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          318 YGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       318 ~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      .+++|+|+|+ .|++++.|+.|++||++
T Consensus       283 ~~~~~s~dG~-~l~v~~~~~~i~v~D~~  309 (337)
T d1pbyb_         283 YSVNVSTDGS-TVWLGGALGDLAAYDAE  309 (337)
T ss_dssp             CEEEECTTSC-EEEEESBSSEEEEEETT
T ss_pred             EEEEECCCCC-EEEEEeCCCcEEEEECC
Confidence            9999999998 78889999999999975

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.91  E-value=3.7e-22  Score=172.06  Aligned_cols=290  Identities=8%  Similarity=-0.019  Sum_probs=185.1

Q ss_pred             cCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCcccee---ee
Q 019059           38 LKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLER---IA  114 (346)
Q Consensus        38 ~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~---~~  114 (346)
                      ...++.+.+|+.....   ....+..+ ..+..++|||||++++++    +.|+.+++||+..       ...+.   +.
T Consensus        38 ~~d~g~v~v~D~~t~~---v~~~~~~g-~~~~~v~fSpDG~~l~~~----s~dg~v~~~d~~t-------~~~~~~~~i~  102 (432)
T d1qksa2          38 LRDAGQIALIDGSTYE---IKTVLDTG-YAVHISRLSASGRYLFVI----GRDGKVNMIDLWM-------KEPTTVAEIK  102 (432)
T ss_dssp             ETTTTEEEEEETTTCC---EEEEEECS-SCEEEEEECTTSCEEEEE----ETTSEEEEEETTS-------SSCCEEEEEE
T ss_pred             EcCCCEEEEEECCCCc---EEEEEeCC-CCeeEEEECCCCCEEEEE----cCCCCEEEEEeeC-------CCceEEEEEe
Confidence            3578999999876643   23444444 469999999999999875    5789999999872       11222   23


Q ss_pred             eeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecc------cCCCceeeEEEEeCCCCCcEEEEe-
Q 019059          115 ALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQ------SSGMLHYLSGGAWDPHDVNAVAAT-  187 (346)
Q Consensus       115 ~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~l~~~~-  187 (346)
                      ....|.+.+.+..|+|||++++++++.++.|++||..+++.........      ...+......+.++|++..++++. 
T Consensus       103 ~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~  182 (432)
T d1qksa2         103 IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK  182 (432)
T ss_dssp             CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred             cCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEc
Confidence            3345666777788899999766677889999999999876443332211      011233567789999998876554 


Q ss_pred             cCCeEEEEEccCCCccc--eeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeee----------------
Q 019059          188 CESSVQFWDLRSMGKTN--SIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL----------------  248 (346)
Q Consensus       188 ~d~~i~i~d~~~~~~~~--~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----------------  248 (346)
                      .++.|.+||..+.+...  .+..+. +..++|+|++++++++...++.+.++|.+... .+..+                
T Consensus       183 ~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~-~~~~~~~g~~~~~~~~~~~~~  261 (432)
T d1qksa2         183 ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK-LVAIEDTGGQTPHPGRGANFV  261 (432)
T ss_dssp             TTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE-EEEEEECSSSSBCCTTCEEEE
T ss_pred             cCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccce-EEEEeccCccccccCccccee
Confidence            57899999998877443  444444 89999999999666666667788888876522 11111                


Q ss_pred             ----------------------------cCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcc
Q 019059          249 ----------------------------PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPN  300 (346)
Q Consensus       249 ----------------------------~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  300 (346)
                                                  ..|...+....++|++ ..+++++.+++.++|+............+ ...+.
T Consensus       262 ~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g-~~~~~~s~p~~~~lw~~~~~~~~~~~~~s-v~vpD  339 (432)
T d1qksa2         262 HPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG-GSLFIKTHPNSQYLYVDATLNPEAEISGS-VAVFD  339 (432)
T ss_dssp             ETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS-CCCCEECCTTCSEEEEECTTCSSHHHHTC-EEEEE
T ss_pred             cCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCC-CeEEEEecCCccceeecccCCCCCCeeeE-EEEEe
Confidence                                        0122234555666666 66677777777777765542211000000 00000


Q ss_pred             cc------cccc--------ccccccccceeeEEEeCCCCCcEEEEee----cCCeEEEeeec
Q 019059          301 QR------ANSL--------LNSYSDYEDSVYGLAWSSREPWIFASLS----YDGRVRNHMLE  345 (346)
Q Consensus       301 ~~------~~~~--------~~~~~~~~~~v~~~~~~~~~~~~l~s~~----~d~~v~vw~~~  345 (346)
                      ..      ..+.        ...+..|...|.+++|+|||++++++..    .++.|.|||-.
T Consensus       340 g~~la~~s~d~~~k~w~~~~~~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~  402 (432)
T d1qksa2         340 IKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDK  402 (432)
T ss_dssp             GGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETT
T ss_pred             chhhcccccCCceEecccccccccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECC
Confidence            00      0000        0123456667999999999985655543    46889999853

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.89  E-value=2.7e-21  Score=161.44  Aligned_cols=276  Identities=9%  Similarity=-0.011  Sum_probs=187.9

Q ss_pred             cCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCccc
Q 019059           23 KADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELY  102 (346)
Q Consensus        23 ~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~  102 (346)
                      .+++++..+++++    .++.|.+|++...  .+.......|...+.+++|+||+++++++   +..++.|.+||+.   
T Consensus         3 a~~~~~~~l~~~~----~~~~v~v~D~~t~--~~~~t~~~~~~~~p~~l~~spDG~~l~v~---~~~~~~v~~~d~~---   70 (346)
T d1jmxb_           3 ALKAGHEYMIVTN----YPNNLHVVDVASD--TVYKSCVMPDKFGPGTAMMAPDNRTAYVL---NNHYGDIYGIDLD---   70 (346)
T ss_dssp             CCCTTCEEEEEEE----TTTEEEEEETTTT--EEEEEEECSSCCSSCEEEECTTSSEEEEE---ETTTTEEEEEETT---
T ss_pred             cCCCCCcEEEEEc----CCCEEEEEECCCC--CEEEEEEcCCCCCcceEEECCCCCEEEEE---ECCCCcEEEEeCc---
Confidence            3455666676664    5789999999764  33333334566778899999999998776   4678999999998   


Q ss_pred             CCCCCccceeeeeeeccC------CceEEEEeecCCCCcEEEEe-----------cCCeEEEEEcCCCCCCceeeecccC
Q 019059          103 GQLNSPQLERIAALDAHV------GKINCVLWWSSGRHDKLVSI-----------DEENIFLWSLDCSNKNAQVQSKQSS  165 (346)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~~~~~~~-----------~d~~i~vwd~~~~~~~~~~~~~~~~  165 (346)
                            +.+.+..+....      ..+..++|+|||++++++..           .+..+.+|+..++.....+......
T Consensus        71 ------t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  144 (346)
T d1jmxb_          71 ------TCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP  144 (346)
T ss_dssp             ------TTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC
T ss_pred             ------cCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeecc
Confidence                  566665554322      24568999999997544432           3678889998865543333222211


Q ss_pred             CCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEE------------------
Q 019059          166 GMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVT------------------  226 (346)
Q Consensus       166 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~------------------  226 (346)
                         ..+..+.+++++. +++.  ++.+.+||+.+++....+.... ...+.++|++..+++.                  
T Consensus       145 ---~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (346)
T d1jmxb_         145 ---RQVYLMRAADDGS-LYVA--GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKD  218 (346)
T ss_dssp             ---SSCCCEEECTTSC-EEEE--SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC--
T ss_pred             ---CceEEEEecCCCE-EEEe--CCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeecc
Confidence               1345556666655 4443  3568899999888777665333 5566666665522222                  


Q ss_pred             -------ecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCc
Q 019059          227 -------AADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESP  299 (346)
Q Consensus       227 -------~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  299 (346)
                             +..++.+.+||+.........+..|...+..+.+++++ .+++... ++.|.+||..+               
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~v~v~d~~~---------------  281 (346)
T d1jmxb_         219 DKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKD-PNQIYGV-LNRLAKYDLKQ---------------  281 (346)
T ss_dssp             -----CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSC-TTEEEEE-ESEEEEEETTT---------------
T ss_pred             CceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCC-CEEEEec-CCeEEEEECCC---------------
Confidence                   22334566777766443444556678888899999998 6666665 45799999998               


Q ss_pred             cccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          300 NQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       300 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                          ++.+..+. +...+.+++|+|||+ +|++++.|+.|++||++
T Consensus       282 ----~~~~~~~~-~~~~~~~va~s~DG~-~l~v~~~d~~v~v~D~~  321 (346)
T d1jmxb_         282 ----RKLIKAAN-LDHTYYCVAFDKKGD-KLYLGGTFNDLAVFNPD  321 (346)
T ss_dssp             ----TEEEEEEE-CSSCCCEEEECSSSS-CEEEESBSSEEEEEETT
T ss_pred             ----CcEEEEEc-CCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECc
Confidence                77766654 344689999999998 77888899999999986

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.87  E-value=1.3e-19  Score=148.24  Aligned_cols=220  Identities=13%  Similarity=0.109  Sum_probs=166.2

Q ss_pred             cCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCC
Q 019059           87 TGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG  166 (346)
Q Consensus        87 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~  166 (346)
                      ++.++.|.+||+.         +.+.+.++... ..+..++|+|+|++++++++.++.|++||+.+++....+...    
T Consensus         8 ~~~~~~v~v~D~~---------t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~----   73 (301)
T d1l0qa2           8 NSESDNISVIDVT---------SNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG----   73 (301)
T ss_dssp             ETTTTEEEEEETT---------TTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS----
T ss_pred             ECCCCEEEEEECC---------CCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecc----
Confidence            4688899999998         67888888544 457899999999976666677899999999876644333221    


Q ss_pred             CceeeEEEEeCCCCCcEEEEe-cCCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcc
Q 019059          167 MLHYLSGGAWDPHDVNAVAAT-CESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAP  244 (346)
Q Consensus       167 ~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  244 (346)
                        ..+..++|++++..+++++ .++.+.+|+..+++....+.... +.++.|+|++..+++++..++.+.+|+..+ ...
T Consensus        74 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~-~~~  150 (301)
T d1l0qa2          74 --SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVT-KAV  150 (301)
T ss_dssp             --SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEE
T ss_pred             --ccccccccccccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccc-cce
Confidence              1568899999998877665 57899999999998887777444 899999999996777888889999999987 445


Q ss_pred             eeeecCCCcceEEEEeCCCCCcEEEEecC-CCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeC
Q 019059          245 IQELPGHTHWTWAVCCNPEYDGFILSAGT-DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWS  323 (346)
Q Consensus       245 ~~~~~~~~~~v~~v~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  323 (346)
                      +..+.. ...+..+.++|++ ..+++++. ++.+.+|+...                   .+.......+ ..+..++|+
T Consensus       151 ~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~-~~~~~~~~~  208 (301)
T d1l0qa2         151 INTVSV-GRSPKGIAVTPDG-TKVYVANFDSMSISVIDTVT-------------------NSVIDTVKVE-AAPSGIAVN  208 (301)
T ss_dssp             EEEEEC-CSSEEEEEECTTS-SEEEEEETTTTEEEEEETTT-------------------TEEEEEEECS-SEEEEEEEC
T ss_pred             eeeccc-CCCceEEEeeccc-cceeeecccccccccccccc-------------------eeeeeccccc-CCcceeecc
Confidence            555553 4567889999999 66655554 56788888776                   4555544444 447889999


Q ss_pred             CCCCcEEEEee--cCCeEEEeeec
Q 019059          324 SREPWIFASLS--YDGRVRNHMLE  345 (346)
Q Consensus       324 ~~~~~~l~s~~--~d~~v~vw~~~  345 (346)
                      +++..+++++.  .++.|++||+.
T Consensus       209 ~~g~~~~v~~~~~~~~~v~v~D~~  232 (301)
T d1l0qa2         209 PEGTKAYVTNVDKYFNTVSMIDTG  232 (301)
T ss_dssp             TTSSEEEEEEECSSCCEEEEEETT
T ss_pred             ccccccccccccceeeeeeeeecC
Confidence            99985544432  34689999975

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=1.8e-20  Score=155.73  Aligned_cols=219  Identities=10%  Similarity=0.069  Sum_probs=153.9

Q ss_pred             CCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeec
Q 019059           39 KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA  118 (346)
Q Consensus        39 ~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~  118 (346)
                      ..+++|.+|++.... .+.......+...+.+++|+|||++++++   ++.++.|.+||+.         +++.+..+..
T Consensus         8 ~~d~~v~v~D~~s~~-~~~~i~~~~~~~~~~~i~~spDg~~l~v~---~~~~~~v~v~D~~---------t~~~~~~~~~   74 (337)
T d1pbyb_           8 ARPDKLVVIDTEKMA-VDKVITIADAGPTPMVPMVAPGGRIAYAT---VNKSESLVKIDLV---------TGETLGRIDL   74 (337)
T ss_dssp             ETTTEEEEEETTTTE-EEEEEECTTCTTCCCCEEECTTSSEEEEE---ETTTTEEEEEETT---------TCCEEEEEEC
T ss_pred             cCCCEEEEEECCCCe-EEEEEECCCCCCCccEEEECCCCCEEEEE---ECCCCeEEEEECC---------CCcEEEEEec
Confidence            367999999887642 12212223344668899999999988765   4678999999998         6677776655


Q ss_pred             cC-----CceEEEEeecCCCCcEEEEe-----------cCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCc
Q 019059          119 HV-----GKINCVLWWSSGRHDKLVSI-----------DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVN  182 (346)
Q Consensus       119 ~~-----~~i~~~~~~~~~~~~~~~~~-----------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  182 (346)
                      +.     ..+..++|+|+++.++++..           .+..+.+||..+.........      ...+..++|+|++++
T Consensus        75 ~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~------~~~~~~~~~s~dg~~  148 (337)
T d1pbyb_          75 STPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA------PRQITMLAWARDGSK  148 (337)
T ss_dssp             CBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC------CSSCCCEEECTTSSC
T ss_pred             CCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc------cCCceEEEEcCCCCE
Confidence            43     33567899999996444432           357788999886653333322      225778899999999


Q ss_pred             EEEEecCCeEEEEEccCCCccceee-------------------------------------------------------
Q 019059          183 AVAATCESSVQFWDLRSMGKTNSIE-------------------------------------------------------  207 (346)
Q Consensus       183 l~~~~~d~~i~i~d~~~~~~~~~~~-------------------------------------------------------  207 (346)
                      +++++.+  +.+||..+++....+.                                                       
T Consensus       149 l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (337)
T d1pbyb_         149 LYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDL  226 (337)
T ss_dssp             EEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEET
T ss_pred             EEEEcCC--cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEc
Confidence            9987644  5667766543211110                                                       


Q ss_pred             ----------ccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCC
Q 019059          208 ----------HAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTD  274 (346)
Q Consensus       208 ----------~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d  274 (346)
                                ..+   +..++++|++. .++.+  ++.+++||+++ .+.+..+. +...+.+++|+|+| .+|++++.|
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~i~v~d~~~-~~~~~~~~-~~~~~~~~~~s~dG-~~l~v~~~~  300 (337)
T d1pbyb_         227 ETGEMAMREVRIMDVFYFSTAVNPAKT-RAFGA--YNVLESFDLEK-NASIKRVP-LPHSYYSVNVSTDG-STVWLGGAL  300 (337)
T ss_dssp             TTCCEEEEEEEECSSCEEEEEECTTSS-EEEEE--ESEEEEEETTT-TEEEEEEE-CSSCCCEEEECTTS-CEEEEESBS
T ss_pred             CCCcEEEEEecCCCcceEEEEecccce-EEEEc--cccEEEEECCC-CcEEEEEc-CCCCEEEEEECCCC-CEEEEEeCC
Confidence                      001   55566777776 45443  57999999997 54566664 56778999999999 999999999


Q ss_pred             CeEEEEecCC
Q 019059          275 STVNLWLVST  284 (346)
Q Consensus       275 ~~i~iwd~~~  284 (346)
                      ++|++||..+
T Consensus       301 ~~i~v~D~~t  310 (337)
T d1pbyb_         301 GDLAAYDAET  310 (337)
T ss_dssp             SEEEEEETTT
T ss_pred             CcEEEEECCC
Confidence            9999999998

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=6.7e-20  Score=157.80  Aligned_cols=186  Identities=12%  Similarity=0.051  Sum_probs=141.3

Q ss_pred             cCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCC
Q 019059           87 TGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG  166 (346)
Q Consensus        87 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~  166 (346)
                      -+.++.|.|||..         +.+.+..+..+. .+..++|+|||++ +++++.|+.|++||+.+++...........+
T Consensus        38 ~~d~g~v~v~D~~---------t~~v~~~~~~g~-~~~~v~fSpDG~~-l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~  106 (432)
T d1qksa2          38 LRDAGQIALIDGS---------TYEIKTVLDTGY-AVHISRLSASGRY-LFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE  106 (432)
T ss_dssp             ETTTTEEEEEETT---------TCCEEEEEECSS-CEEEEEECTTSCE-EEEEETTSEEEEEETTSSSCCEEEEEECCSE
T ss_pred             EcCCCEEEEEECC---------CCcEEEEEeCCC-CeeEEEECCCCCE-EEEEcCCCCEEEEEeeCCCceEEEEEecCCC
Confidence            3788999999998         789999998774 6899999999996 5566789999999998776443333333344


Q ss_pred             CceeeEEEEeCCCCCcEE-EEecCCeEEEEEccCCCccceeec------------cc-eeEEEeCCCCCcEEEEecCCCe
Q 019059          167 MLHYLSGGAWDPHDVNAV-AATCESSVQFWDLRSMGKTNSIEH------------AH-VRNVDYDTKKKHLLVTAADESG  232 (346)
Q Consensus       167 ~~~~v~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~------------~~-v~~~~~~~~~~~~l~~~~~dg~  232 (346)
                      |...+.+..|+|||++++ ++..++.|++||..+++.+..+..            .. ...+.++|++..++++...++.
T Consensus       107 ~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~  186 (432)
T d1qksa2         107 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK  186 (432)
T ss_dssp             EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred             CCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCe
Confidence            555677788999999875 555799999999999887665441            11 6678999999867778888899


Q ss_pred             EEEEEcccCCcc-eeeecCCCcceEEEEeCCCCCcEEEEec-CCCeEEEEecCCC
Q 019059          233 IHLWDLRMLKAP-IQELPGHTHWTWAVCCNPEYDGFILSAG-TDSTVNLWLVSTS  285 (346)
Q Consensus       233 i~i~d~~~~~~~-~~~~~~~~~~v~~v~~~~~~~~~l~s~~-~d~~i~iwd~~~~  285 (346)
                      |.+||....... +..+ .+...+..++|+|+| +++++++ .++.+.++|....
T Consensus       187 i~~~d~~~~~~~~~~~i-~~g~~~~~~~~spdg-~~~~va~~~~~~v~v~d~~~~  239 (432)
T d1qksa2         187 ILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSH-RYFITAANARNKLVVIDTKEG  239 (432)
T ss_dssp             EEEEETTCSSEEEEEEE-ECCSSEEEEEECTTS-CEEEEEEGGGTEEEEEETTTT
T ss_pred             EEEEEccCCCcceEEEE-cccCccccceECCCC-CEEEEeccccceEEEeecccc
Confidence            999998764322 2223 355678899999999 6655554 5668999998763

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.82  E-value=4.3e-17  Score=137.42  Aligned_cols=284  Identities=8%  Similarity=-0.070  Sum_probs=185.5

Q ss_pred             eEeeeccCCCCcceEEEeecc-cCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEee------cCC
Q 019059           17 RCISDVKADTDHTSFLTGTLS-LKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFS------TGE   89 (346)
Q Consensus        17 ~~~~~~~~~~~~~~~~~g~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~------~~~   89 (346)
                      .++.....++++.++++.... ....+.+++|+....  .+. ..+..+.  ...++|+|||++++++...      +..
T Consensus        21 ~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg--~~~-~~~~~~~--~~~~a~SpDG~~l~va~~~~~~~~~~~~   95 (373)
T d2madh_          21 GPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSG--SIL-GHVNGGF--LPNPVAAHSGSEFALASTSFSRIAKGKR   95 (373)
T ss_pred             CCccccccCCCCCEEEEEcccccCCCceEEEEECCCC--CEE-EEEeCCC--CccEEEcCCCCEEEEEeecCCccccccc
Confidence            345566788999998776432 223466777765443  333 3344443  3379999999999887422      134


Q ss_pred             cceEEEEecCcccCCCCCccceeeeeeeccCCce-------EEEEeecCCCCcEEEE-ecCCeEEEEEcCCCCCCceeee
Q 019059           90 SYGAAIWQIPELYGQLNSPQLERIAALDAHVGKI-------NCVLWWSSGRHDKLVS-IDEENIFLWSLDCSNKNAQVQS  161 (346)
Q Consensus        90 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i-------~~~~~~~~~~~~~~~~-~~d~~i~vwd~~~~~~~~~~~~  161 (346)
                      ++.|.+||+.         ..+.+..+..+....       ..+.|+++++.+++.. ..++.+.+|+....+..    .
T Consensus        96 ~~~v~v~D~~---------t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~----~  162 (373)
T d2madh_          96 TDYVEVFDPV---------TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDD----Q  162 (373)
T ss_pred             ceEEEEEECC---------CCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEE----E
Confidence            6789999998         667766665554433       4578889998755555 34678888888754321    1


Q ss_pred             cccCCCceeeEEEEeCCCCCcEE-EEecCCeEEEEEccCCCccceeecc-----c---eeEEEeCCCCCcEEEEecCCCe
Q 019059          162 KQSSGMLHYLSGGAWDPHDVNAV-AATCESSVQFWDLRSMGKTNSIEHA-----H---VRNVDYDTKKKHLLVTAADESG  232 (346)
Q Consensus       162 ~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~-----~---v~~~~~~~~~~~~l~~~~~dg~  232 (346)
                           +.....++.++|+++.++ +.+.|+.+.+||...++........     .   ...+.+.+++.  ++..+.++.
T Consensus       163 -----~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  235 (373)
T d2madh_         163 -----LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR--IVWPVYSGK  235 (373)
T ss_pred             -----EeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCce--EEEecCCce
Confidence                 112456788999998765 5667999999999988766544311     1   45566666664  556667889


Q ss_pred             EEEEEcccCCc-ceeeecCCC----------cceEEEEeCCCCC---------cEEEEecCCCeEEEEecCCCCCCCCCc
Q 019059          233 IHLWDLRMLKA-PIQELPGHT----------HWTWAVCCNPEYD---------GFILSAGTDSTVNLWLVSTSNHDELPS  292 (346)
Q Consensus       233 i~i~d~~~~~~-~~~~~~~~~----------~~v~~v~~~~~~~---------~~l~s~~~d~~i~iwd~~~~~~~~~~~  292 (346)
                      +.+|+...... .......+.          .....+++++++.         ..+++...++.+.+||..+        
T Consensus       236 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t--------  307 (373)
T d2madh_         236 ILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV--------  307 (373)
T ss_pred             EEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCC--------
Confidence            99998775321 111111111          2233455666551         2334455667899999988        


Q ss_pred             ccccCCccccccccccccccccceeeEEEeCCCCCc-EEEEeecCCeEEEeeec
Q 019059          293 ESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPW-IFASLSYDGRVRNHMLE  345 (346)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~d~~v~vw~~~  345 (346)
                                 ++.+..+. +...+.+++|+|||++ ++++++.|+.|++||++
T Consensus       308 -----------~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~  349 (373)
T d2madh_         308 -----------GQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAG  349 (373)
T ss_pred             -----------CcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECC
Confidence                       67776664 4556899999999975 45788999999999985

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=3.1e-17  Score=135.89  Aligned_cols=241  Identities=9%  Similarity=0.065  Sum_probs=158.8

Q ss_pred             cCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCC
Q 019059           87 TGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG  166 (346)
Q Consensus        87 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~  166 (346)
                      ++.++.|++|++..      ....+.++.+ .|.+.+..++|+|||+++++++..|+.|++|++..............  
T Consensus        10 ~~~~~~I~v~~~~~------~~~l~~~~~~-~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~--   80 (333)
T d1ri6a_          10 SPESQQIHVWNLNH------EGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA--   80 (333)
T ss_dssp             EGGGTEEEEEEECT------TSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE--
T ss_pred             CCCCCcEEEEEEcC------CCCeEEEEEE-cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecc--
Confidence            57899999999972      1122333444 67788999999999997555556689999999987654444333221  


Q ss_pred             CceeeEEEEeCCCCCcEEEEec-CCeEEEEEccCCCccceeec---cc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccC
Q 019059          167 MLHYLSGGAWDPHDVNAVAATC-ESSVQFWDLRSMGKTNSIEH---AH-VRNVDYDTKKKHLLVTAADESGIHLWDLRML  241 (346)
Q Consensus       167 ~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~---~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  241 (346)
                      +...+..++|+||++++++++. ++.+.+|+............   .. +.++.++|+++.++.....+..|.+|+....
T Consensus        81 ~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~  160 (333)
T d1ri6a_          81 LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDD  160 (333)
T ss_dssp             CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             cCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccC
Confidence            2235678999999999999885 77899999887654433321   11 8899999999955555666778999998764


Q ss_pred             Ccceee-----ecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccce
Q 019059          242 KAPIQE-----LPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDS  316 (346)
Q Consensus       242 ~~~~~~-----~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (346)
                      ......     ..........++|++++.....+....+...+|+.............         .............
T Consensus       161 ~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~  231 (333)
T d1ri6a_         161 GHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQT---------LDMMPENFSDTRW  231 (333)
T ss_dssp             SCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEE---------EECSCTTCCSCCC
T ss_pred             CcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeee---------eeeeecCCCcccc
Confidence            322211     11234556889999999333445556678888887651111000000         0000001112334


Q ss_pred             eeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          317 VYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       317 v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      ...++++++++.+++++..++.+.+|+++
T Consensus       232 ~~~~~~s~d~~~~~~~~~~~~~~~~~~~~  260 (333)
T d1ri6a_         232 AADIHITPDGRHLYACDRTASLITVFSVS  260 (333)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             ceeEEEecccCceeeecccCCeEEEEEEc
Confidence            67789999998777777888999999874

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.79  E-value=1.4e-17  Score=139.44  Aligned_cols=284  Identities=11%  Similarity=-0.038  Sum_probs=177.3

Q ss_pred             cCCCCcceEEEeeccc-CCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEee------cCCcceEEE
Q 019059           23 KADTDHTSFLTGTLSL-KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFS------TGESYGAAI   95 (346)
Q Consensus        23 ~~~~~~~~~~~g~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~------~~~d~~i~v   95 (346)
                      ...+++.++++..... ...+.+++|+....  .+. ..+..+  .+..++|+||++.|+++...      +..++.|++
T Consensus         8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg--~~~-~~~~~g--~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v   82 (355)
T d2bbkh_           8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAG--RVI-GMIDGG--FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEV   82 (355)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTT--EEE-EEEEEC--SSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred             eeCCCCCEEEEEecccCCCcCeEEEEECCCC--cEE-EEEECC--CCCceEEcCCCCEEEEEeCCCccccccCCCCEEEE
Confidence            4578888887764433 34567888876543  332 333333  34479999999998876321      235789999


Q ss_pred             EecCcccCCCCCccceeeeeeeccC-------CceEEEEeecCCCCcEEEE-ecCCeEEEEEcCCCCCCceeeecccC--
Q 019059           96 WQIPELYGQLNSPQLERIAALDAHV-------GKINCVLWWSSGRHDKLVS-IDEENIFLWSLDCSNKNAQVQSKQSS--  165 (346)
Q Consensus        96 w~~~~~~~~~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~~~~~~-~~d~~i~vwd~~~~~~~~~~~~~~~~--  165 (346)
                      ||+.         .++.+..+..+.       .....+.|++++++++++. +.+..+.+|+..+++....+......  
T Consensus        83 ~D~~---------t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (355)
T d2bbkh_          83 FDPV---------TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHI  153 (355)
T ss_dssp             ECTT---------TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEE
T ss_pred             EECC---------CCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceE
Confidence            9998         556655554332       2235689999999755555 45688999999876543332221100  


Q ss_pred             CCceeeEEEEeCCCCCcEEEEe-cCCeEEEEEccCCCccceeeccceeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcc
Q 019059          166 GMLHYLSGGAWDPHDVNAVAAT-CESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAP  244 (346)
Q Consensus       166 ~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  244 (346)
                      ........+.+++++..++... .++.+.+++...........   +....+.+++. .++.++.++.+++|++......
T Consensus       154 ~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~  229 (355)
T d2bbkh_         154 FPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFL---INHPAYSQKAG-RLVWPTYTGKIHQIDLSSGDAK  229 (355)
T ss_dssp             EEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCB---CSCCEEETTTT-EEEEEBTTSEEEEEECTTSSCE
T ss_pred             eecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecce---eeeccccCCCC-eEEEecCCCeEEEEecCCCcEE
Confidence            0001223455666666555443 24455555554443222111   55566777776 7778889999999998863321


Q ss_pred             -eeeecCCC----------cceEEEEeCCCCCcEEEEecCC----------CeEEEEecCCCCCCCCCcccccCCccccc
Q 019059          245 -IQELPGHT----------HWTWAVCCNPEYDGFILSAGTD----------STVNLWLVSTSNHDELPSESLVESPNQRA  303 (346)
Q Consensus       245 -~~~~~~~~----------~~v~~v~~~~~~~~~l~s~~~d----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  303 (346)
                       +.....+.          .....+++++++ ..++....+          ..|.+||..+                   
T Consensus       230 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~-~~~~~~~~~~~~~~~~~~~~~v~v~d~~t-------------------  289 (355)
T d2bbkh_         230 FLPAVEALTEAERADGWRPGGWQQVAYHRAL-DRIYLLVDQRDEWRHKTASRFVVVLDAKT-------------------  289 (355)
T ss_dssp             ECCCEESSCHHHHHTTEEECSSSCEEEETTT-TEEEEEEEECCTTCTTSCEEEEEEEETTT-------------------
T ss_pred             EEeccCCcccceEeeeeeccceEEEEEeCCC-CeEEEEeccCCceeecCCCCeEEEEeCCC-------------------
Confidence             11121111          223457888888 666554332          4799999998                   


Q ss_pred             cccccccccccceeeEEEeCCCCCc-EEEEeecCCeEEEeeec
Q 019059          304 NSLLNSYSDYEDSVYGLAWSSREPW-IFASLSYDGRVRNHMLE  345 (346)
Q Consensus       304 ~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~d~~v~vw~~~  345 (346)
                      ++.+..+.. ...+.+++|+|+|+. ++++++.|+.|++||++
T Consensus       290 ~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~  331 (355)
T d2bbkh_         290 GERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAE  331 (355)
T ss_dssp             CCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETT
T ss_pred             CcEEEEecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECC
Confidence            677666653 345899999999974 45677889999999975

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.77  E-value=5.6e-18  Score=141.00  Aligned_cols=254  Identities=10%  Similarity=0.056  Sum_probs=159.8

Q ss_pred             eeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeec-cCCceEEEEeecCCCCcEEEEecCCeEEEEE
Q 019059           71 LSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA-HVGKINCVLWWSSGRHDKLVSIDEENIFLWS  149 (346)
Q Consensus        71 ~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd  149 (346)
                      ++|++++++++++    +.++.|.+||+.         +.+.+.+++. +...+.+++|+|||+++++++..++.|++||
T Consensus         2 ~a~~~~~~~l~~~----~~~~~v~v~D~~---------t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d   68 (346)
T d1jmxb_           2 PALKAGHEYMIVT----NYPNNLHVVDVA---------SDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGID   68 (346)
T ss_dssp             CCCCTTCEEEEEE----ETTTEEEEEETT---------TTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             ccCCCCCcEEEEE----cCCCEEEEEECC---------CCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEe
Confidence            5789999999886    688999999998         7788888763 5667889999999997666667789999999


Q ss_pred             cCCCCCCceeeecc-cCCCceeeEEEEeCCCCCcEEEEe------------cCCeEEEEEccCCCccceeec---cc-ee
Q 019059          150 LDCSNKNAQVQSKQ-SSGMLHYLSGGAWDPHDVNAVAAT------------CESSVQFWDLRSMGKTNSIEH---AH-VR  212 (346)
Q Consensus       150 ~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~------------~d~~i~i~d~~~~~~~~~~~~---~~-v~  212 (346)
                      +.+++......... ...+...+..++|+|||+.++++.            .+..+.+||..+++....+..   +. +.
T Consensus        69 ~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  148 (346)
T d1jmxb_          69 LDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVY  148 (346)
T ss_dssp             TTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCC
T ss_pred             CccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceE
Confidence            99776544333222 112223467899999999988775            367899999998776554432   22 66


Q ss_pred             EEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCC-
Q 019059          213 NVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELP-  291 (346)
Q Consensus       213 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-  291 (346)
                      .+.+++++. +++.+   +.+.+|++.+ ...+..+..+ .....+.++|++....+....++.+.+++.......... 
T Consensus       149 ~~~~~~~~~-~~~~~---~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (346)
T d1jmxb_         149 LMRAADDGS-LYVAG---PDIYKMDVKT-GKYTVALPLR-NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQD  222 (346)
T ss_dssp             CEEECTTSC-EEEES---SSEEEECTTT-CCEEEEECST-TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC------
T ss_pred             EEEecCCCE-EEEeC---CcceEEEccC-CCEEEEEecC-CCccceEEeccccEEEEEecCCCceEeeeeeeeeccCcee
Confidence            777777776 55543   4688999886 4456665543 344556677776333333333444444332211000000 


Q ss_pred             --cccc---cCCccccccc-cccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          292 --SESL---VESPNQRANS-LLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       292 --~~~~---~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                        ....   ........+. .......|...+..+.+++++. .++... ++.|++||+.
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~v~v~d~~  280 (346)
T d1jmxb_         223 PATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP-NQIYGV-LNRLAKYDLK  280 (346)
T ss_dssp             -CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCT-TEEEEE-ESEEEEEETT
T ss_pred             EeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCC-EEEEec-CCeEEEEECC
Confidence              0000   0000000022 2233445666788899999887 555555 4679999974

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.73  E-value=5.5e-15  Score=124.25  Aligned_cols=264  Identities=8%  Similarity=-0.021  Sum_probs=172.5

Q ss_pred             eccCCCCcceEEEeeccc------CCCCeEEEEEecCCCCeEEEeeeeccccc-------eEEeeecCCCCceEEEEeec
Q 019059           21 DVKADTDHTSFLTGTLSL------KEENEVHLLRLSSGGTELICEGLFSHPNE-------IWDLSSCPFDQRIFSTVFST   87 (346)
Q Consensus        21 ~~~~~~~~~~~~~g~~~~------~~~~~i~~~~~~~~~~~~~~~~~~~h~~~-------v~~~~~~~~~~~l~~~~~~~   87 (346)
                      .+.+++++.++++.....      ..++.+.+|+....+.   ...+..+...       ...+.|+|+++.++...  .
T Consensus        70 ~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~---~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~--~  144 (373)
T d2madh_          70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLP---IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQ--F  144 (373)
T ss_pred             cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcE---EEEEecCCcceeEeccCCCcEEEEeCCCcEEEEE--E
Confidence            467889999998875422      3457788888776432   1222223322       24578888888877654  2


Q ss_pred             CCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeeccc-CC
Q 019059           88 GESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQS-SG  166 (346)
Q Consensus        88 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~-~~  166 (346)
                      ..+..+.+|+..         ..+..    .+.....++.++|+++.++++.+.|+.+.+|+............... .+
T Consensus       145 ~~~~~~~~~~~~---------~~~~~----~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~  211 (373)
T d2madh_         145 AAGPAVGLVVQG---------GSSDD----QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAA  211 (373)
T ss_pred             cCCCceEEeecc---------CCeEE----EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccC
Confidence            345678888876         33332    33344678899999998777778899999999987654333322111 11


Q ss_pred             CceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeec-------------cc-eeEEEeCCCCCc---------E
Q 019059          167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH-------------AH-VRNVDYDTKKKH---------L  223 (346)
Q Consensus       167 ~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-------------~~-v~~~~~~~~~~~---------~  223 (346)
                      .......+.+.+++. ++..+.++.+.+|+............             .. ...+++++++..         .
T Consensus       212 ~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  290 (373)
T d2madh_         212 QNLLTQPAQANKSGR-IVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSA  290 (373)
T ss_pred             ccceeeeEEECCCce-EEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCce
Confidence            122334455665543 55556788899998887653211110             00 344566666652         2


Q ss_pred             EEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCc-EEEEecCCCeEEEEecCCCCCCCCCcccccCCcccc
Q 019059          224 LVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG-FILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQR  302 (346)
Q Consensus       224 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  302 (346)
                      ++....++.+.+||..+ .+.+..+. +...+..++|+|||.. ++++++.|+.|++||+.+                  
T Consensus       291 ~~~~~~~~~v~~~d~~t-~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~t------------------  350 (373)
T d2madh_         291 WKLHAAAKEVTSVTGLV-GQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGA------------------  350 (373)
T ss_pred             EEeecCCCeEEEEECCC-CcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCC------------------
Confidence            33445667899999987 44566554 6678899999999933 457889999999999999                  


Q ss_pred             ccccccccccccceeeEEEeCC
Q 019059          303 ANSLLNSYSDYEDSVYGLAWSS  324 (346)
Q Consensus       303 ~~~~~~~~~~~~~~v~~~~~~~  324 (346)
                       ++.+..+..+....+.+++.+
T Consensus       351 -g~~~~~~~~~g~~P~~l~~~~  371 (373)
T d2madh_         351 -GDQDQSTVELGSGPQVLSVMN  371 (373)
T ss_pred             -CCEEEEECCCCCCCcEEEEec
Confidence             899999988777677777654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.71  E-value=1e-15  Score=127.77  Aligned_cols=264  Identities=10%  Similarity=0.001  Sum_probs=164.3

Q ss_pred             eeccCCCCcceEEEeecc------cCCCCeEEEEEecCCCCeEEEeeeec----cccceEEeeecCCCCceEEEEeecCC
Q 019059           20 SDVKADTDHTSFLTGTLS------LKEENEVHLLRLSSGGTELICEGLFS----HPNEIWDLSSCPFDQRIFSTVFSTGE   89 (346)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~------~~~~~~i~~~~~~~~~~~~~~~~~~~----h~~~v~~~~~~~~~~~l~~~~~~~~~   89 (346)
                      +.+.+++++..+++....      ...++.|.+|+............-..    .......++|+|+++.++++.  .+.
T Consensus        50 ~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~--~~~  127 (355)
T d2bbkh_          50 PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQ--FSP  127 (355)
T ss_dssp             CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEE--CSS
T ss_pred             CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEec--CCC
Confidence            345688888888765431      12346788887665432111111111    112345689999999888763  456


Q ss_pred             cceEEEEecCcccCCCCCccceeeeeeeccCC-------ceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeec
Q 019059           90 SYGAAIWQIPELYGQLNSPQLERIAALDAHVG-------KINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK  162 (346)
Q Consensus        90 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~-------~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~  162 (346)
                      +..+.+|+..         ..+.+..+..+..       ....+.++++++.+++....++.+.+++......       
T Consensus       128 ~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~-------  191 (355)
T d2bbkh_         128 APAVGVVDLE---------GKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-------  191 (355)
T ss_dssp             SCEEEEEETT---------TTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC-------
T ss_pred             CceeeeeecC---------CCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc-------
Confidence            6789999988         5666665544322       2234556666664333333445555555443221       


Q ss_pred             ccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccc--eeec-----------cc-eeEEEeCCCCCcEEEEec
Q 019059          163 QSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN--SIEH-----------AH-VRNVDYDTKKKHLLVTAA  228 (346)
Q Consensus       163 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--~~~~-----------~~-v~~~~~~~~~~~~l~~~~  228 (346)
                         .+...+....+.+++..++.++.++.+++|++..++...  ....           .. ...+++++++..+++...
T Consensus       192 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~  268 (355)
T d2bbkh_         192 ---EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVD  268 (355)
T ss_dssp             ---TTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEE
T ss_pred             ---eecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEec
Confidence               122244556777788888888999999999998775321  1110           01 345888999984333322


Q ss_pred             C---------CCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCc-EEEEecCCCeEEEEecCCCCCCCCCcccccCC
Q 019059          229 D---------ESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG-FILSAGTDSTVNLWLVSTSNHDELPSESLVES  298 (346)
Q Consensus       229 ~---------dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~  298 (346)
                      .         ...|.+||..+ .+.+..+. +...+.+++|+|+|.. ++++++.|+.|++||+++              
T Consensus       269 ~~~~~~~~~~~~~v~v~d~~t-~~~~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~t--------------  332 (355)
T d2bbkh_         269 QRDEWRHKTASRFVVVLDAKT-GERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAES--------------  332 (355)
T ss_dssp             ECCTTCTTSCEEEEEEEETTT-CCEEEEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTT--------------
T ss_pred             cCCceeecCCCCeEEEEeCCC-CcEEEEec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCC--------------
Confidence            1         23799999997 44566665 4566889999999933 456778899999999999              


Q ss_pred             ccccccccccccccccceeeEEEeCCC
Q 019059          299 PNQRANSLLNSYSDYEDSVYGLAWSSR  325 (346)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~v~~~~~~~~  325 (346)
                           ++.+.++.++......+.+.++
T Consensus       333 -----g~~~~~i~~~G~~p~~i~~~d~  354 (355)
T d2bbkh_         333 -----GEELRSVNQLGHGPQVITTADM  354 (355)
T ss_dssp             -----CCEEEEECCCCSSCCEEECCCC
T ss_pred             -----CCEEEEEeCcCCCccEEEeCCC
Confidence                 8888888766555555655543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.70  E-value=5.6e-16  Score=130.28  Aligned_cols=249  Identities=10%  Similarity=-0.043  Sum_probs=162.7

Q ss_pred             cceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeee-ccCCceEEEEeecCCCCcEEEEecCCe
Q 019059           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD-AHVGKINCVLWWSSGRHDKLVSIDEEN  144 (346)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~d~~  144 (346)
                      ........+|||++|+++   ...+..|.++|++         +.+....+. .+...+..++|+|+++..++++..+..
T Consensus        72 P~~s~t~gtpDGr~lfV~---d~~~~rVavIDl~---------t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~  139 (441)
T d1qnia2          72 PHISMTDGRYDGKYLFIN---DKANTRVARIRLD---------IMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFV  139 (441)
T ss_dssp             CEEEEETTEEEEEEEEEE---ETTTTEEEEEETT---------TTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSC
T ss_pred             CCcceecccCCCCEEEEE---cCCCCEEEEEECC---------CCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCc
Confidence            345566678999999887   3567799999998         666666554 356778999999999986666644444


Q ss_pred             E------------------EEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecC-----------------
Q 019059          145 I------------------FLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE-----------------  189 (346)
Q Consensus       145 i------------------~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------------  189 (346)
                      +                  ..+|..+.+...++....      ....+.|+|+|+++++++.+                 
T Consensus       140 v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~------~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~  213 (441)
T d1qnia2         140 IPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDG------NLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDW  213 (441)
T ss_dssp             EESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEESS------CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCE
T ss_pred             ccccCcccccccccccceEEeecCccceeeEEEecCC------CccceEECCCCCEEEEEecCCCceEEEeccCcceEEE
Confidence            3                  346666544333333221      56788999999998887643                 


Q ss_pred             ------------------------CeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcc
Q 019059          190 ------------------------SSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAP  244 (346)
Q Consensus       190 ------------------------~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  244 (346)
                                              +.+.+++....+.+..+..+. ...+.++|||+++++++..+++|.+||+++..+.
T Consensus       214 i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~  293 (441)
T d1qnia2         214 VVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDL  293 (441)
T ss_dssp             EEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHH
T ss_pred             EEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhH
Confidence                                    233444444445555565555 8899999999988888999999999998753211


Q ss_pred             -------eeeecCC---CcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccccccc
Q 019059          245 -------IQELPGH---THWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYE  314 (346)
Q Consensus       245 -------~~~~~~~---~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (346)
                             ...+.++   .-.....+|+++| ..+.+...|.+|..|++.......    .......-.....++-..+|.
T Consensus       294 ~~~~~~~~~~~~~~~~~glgplh~~fd~~g-~~yts~~~ds~v~kw~~~~~~~~~----~~~~~~~v~~~~~v~y~~GH~  368 (441)
T d1qnia2         294 FEDKIELRDTIVAEPELGLGPLHTTFDGRG-NAYTTLFIDSQVCKWNIADAIKHY----NGDRVNYIRQKLDVQYQPGHN  368 (441)
T ss_dssp             TTTSSCGGGGEEECCBCCSCEEEEEECSSS-EEEEEETTTTEEEEEEHHHHHHHH----TTCCCCCEEEEEECSSCEEEE
T ss_pred             hhccCCcceEEEeecccccCcccceecCCc-eEEEcccccceEEEeccchhhhhh----ccCCCceeEeccccccCCCCC
Confidence                   1111111   1223456899999 888999999999999985310000    000000000011222235888


Q ss_pred             ceeeEEEeCCCCCcEEEEe---ecCCe
Q 019059          315 DSVYGLAWSSREPWIFASL---SYDGR  338 (346)
Q Consensus       315 ~~v~~~~~~~~~~~~l~s~---~~d~~  338 (346)
                      ..+.+..++|+|+ +|+++   +.|+.
T Consensus       369 ~~~~~~t~~pdGk-~l~s~~k~s~dr~  394 (441)
T d1qnia2         369 HASLTESRDADGK-WLVVLSKFSKDRF  394 (441)
T ss_dssp             EETTTTSTTCCCC-EEEEEESCCGGGS
T ss_pred             ccccccccCCCCc-EEEecCccccccC
Confidence            8889999999998 88888   55653

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.70  E-value=1.8e-14  Score=120.65  Aligned_cols=288  Identities=7%  Similarity=0.009  Sum_probs=172.6

Q ss_pred             ceEEEeecccCCCCeEEEEEecCCCCeEEEee--eeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCC
Q 019059           29 TSFLTGTLSLKEENEVHLLRLSSGGTELICEG--LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLN  106 (346)
Q Consensus        29 ~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~  106 (346)
                      +.|++|+++  ..+.|+.+.|+.+...+....  .......+.-|+|+|+++.|.++     ..+.+..|.+..      
T Consensus         3 ~~l~vGtyt--~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~-----~~~~~~~~~i~~------   69 (365)
T d1jofa_           3 HHLMIGTWT--PPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGA-----AMKKWSSFAVKS------   69 (365)
T ss_dssp             EEEEEEESS--SSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEE-----EBTEEEEEEEEE------
T ss_pred             eEEEEEeec--CCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEE-----eCCcEEEEEEeC------
Confidence            468899886  356799999999887665332  23445567779999999998886     334677777762      


Q ss_pred             Cccceeeeee-eccCCceEEEEeecCCCCcEEEEe--cCCeEEEEEcCCCCCCcee------------eecccCCCceee
Q 019059          107 SPQLERIAAL-DAHVGKINCVLWWSSGRHDKLVSI--DEENIFLWSLDCSNKNAQV------------QSKQSSGMLHYL  171 (346)
Q Consensus       107 ~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~--~d~~i~vwd~~~~~~~~~~------------~~~~~~~~~~~v  171 (346)
                        ........ .........+.++++++.++++..  ..+.|..+.+.........            ...........+
T Consensus        70 --~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~  147 (365)
T d1jofa_          70 --PTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGI  147 (365)
T ss_dssp             --TTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCE
T ss_pred             --CCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcc
Confidence              22222111 112234566778888875445442  2456655544322111111            100001111246


Q ss_pred             EEEEeCCCCCcEEEEec-CCeEEEEEccCCCcccee---e---ccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCc
Q 019059          172 SGGAWDPHDVNAVAATC-ESSVQFWDLRSMGKTNSI---E---HAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA  243 (346)
Q Consensus       172 ~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~---~---~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  243 (346)
                      .++.|+|++++++++.. ...|.+|+..........   .   .+. .+.++|+|+++.++++...+++|.+|++.....
T Consensus       148 h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~  227 (365)
T d1jofa_         148 HGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATH  227 (365)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred             eEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCc
Confidence            78999999999988864 457888876643322111   1   122 999999999996667777889999999875321


Q ss_pred             c-eee---e--------------cCCCcceEEEEeCCCCCcEEEEecC------CCeEEEEecCCCCCCCCCcccccCCc
Q 019059          244 P-IQE---L--------------PGHTHWTWAVCCNPEYDGFILSAGT------DSTVNLWLVSTSNHDELPSESLVESP  299 (346)
Q Consensus       244 ~-~~~---~--------------~~~~~~v~~v~~~~~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~  299 (346)
                      . +..   .              ..+......+.++|+| ++|+++..      ...|..|++......           
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG-~~lyvsnr~~~~~~~~~i~~~~~~~~g~~-----------  295 (365)
T d1jofa_         228 MPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG-KYMFASSRANKFELQGYIAGFKLRDCGSI-----------  295 (365)
T ss_dssp             CEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS-SEEEEEEEESSTTSCCEEEEEEECTTSCE-----------
T ss_pred             eEEEEeeeeccccccccccccccccccCCccceEECCCC-CEEEEEcccCCCccceEEEEEEecCCCce-----------
Confidence            1 111   1              0122345678999999 77776542      224777776640000           


Q ss_pred             cccccccccccccccceeeEEEeCC-CCCcEEEEeecCCeEEEeeec
Q 019059          300 NQRANSLLNSYSDYEDSVYGLAWSS-REPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       300 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~d~~v~vw~~~  345 (346)
                        .....+...........+++++| +|++++++...++.|.+|+++
T Consensus       296 --~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~  340 (365)
T d1jofa_         296 --EKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK  340 (365)
T ss_dssp             --EEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred             --eeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEe
Confidence              00001111111223467899998 788677777889999999875

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.66  E-value=1.7e-14  Score=121.22  Aligned_cols=259  Identities=10%  Similarity=-0.022  Sum_probs=154.2

Q ss_pred             CeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEee------cCCcceEEEEecCcccCCCCCccceeeee
Q 019059           42 NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFS------TGESYGAAIWQIPELYGQLNSPQLERIAA  115 (346)
Q Consensus        42 ~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~------~~~d~~i~vw~~~~~~~~~~~~~~~~~~~  115 (346)
                      +...+|-++.....+.. .+..+...  .++|+|+++.++++...      |..|+.|.+||..         +.+++..
T Consensus        44 g~~~~~~~d~~~~~~~~-~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~---------t~~~~~~  111 (368)
T d1mdah_          44 GTTENWVSCAGCGVTLG-HSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPV---------TFLPIAD  111 (368)
T ss_dssp             SSEEEEEEETTTTEEEE-EEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTT---------TCCEEEE
T ss_pred             CcceEEEEeCCCCcEEE-EEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECC---------CCcEeee
Confidence            33344444444444443 33334333  58999999998886432      3457889999998         6676666


Q ss_pred             eeccCC-------ceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCC-CCcEEEEe
Q 019059          116 LDAHVG-------KINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPH-DVNAVAAT  187 (346)
Q Consensus       116 ~~~~~~-------~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~  187 (346)
                      +..+..       ....++|+|||++++++...++.+.+||+.+.+..........     .    .+.|. ...+++.+
T Consensus       112 i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~-----~----~~~~~~~~~~v~~~  182 (368)
T d1mdah_         112 IELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASC-----F----HIHPGAAATHYLGS  182 (368)
T ss_dssp             EEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSC-----C----CCEEEETTEEECCC
T ss_pred             ecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCc-----c----eEccCCCceEEEEc
Confidence            654322       2346899999998666656689999999987654333322110     0    11112 22344445


Q ss_pred             cCCeEEEEEccCCCccceeec-----cc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcce-eeecC--------
Q 019059          188 CESSVQFWDLRSMGKTNSIEH-----AH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPI-QELPG--------  250 (346)
Q Consensus       188 ~d~~i~i~d~~~~~~~~~~~~-----~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~--------  250 (346)
                      .||.+.++++...........     .+   +..+.+.+++. .+.+  ..+.+++++........ .....        
T Consensus       183 ~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (368)
T d1mdah_         183 CPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGM-LVWA--VASSILQGDIPAAGATMKAAIDGNESGRKAD  259 (368)
T ss_dssp             CTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTE-EEEC--BSSCCEEEECCSSCCEEECCCCSSCTHHHHT
T ss_pred             CCCCEEEEEecCCceeeeeeecccccccccceeecccccCcE-EEEe--cCCCEEEEeecCCceEEEeecccccceeeee
Confidence            577777777665443222110     11   55677777775 4433  34556666665422111 01111        


Q ss_pred             --CCcceEEEEeCCCCCcEEEEecC---------CCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeE
Q 019059          251 --HTHWTWAVCCNPEYDGFILSAGT---------DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYG  319 (346)
Q Consensus       251 --~~~~v~~v~~~~~~~~~l~s~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  319 (346)
                        .......++++|++ ..++....         ...|.+||..+                   ++.+..+.. ...+.+
T Consensus       260 ~~~~~g~~~~a~~~~~-~~~~v~~~~~~~~~~~~~~~v~v~D~~t-------------------~~~~~~~~~-~~~~~~  318 (368)
T d1mdah_         260 NFRSAGFQMVAKLKNT-DGIMILTVEHSRSCLAAAENTSSVTASV-------------------GQTSGPISN-GHDSDA  318 (368)
T ss_dssp             TEEECSSSCEEEETTT-TEEEEEEEECSSCTTSCEEEEEEEESSS-------------------CCEEECCEE-EEEECE
T ss_pred             eecCCCceeEEEcCCC-CEEEEEecCCCceeecCCceEEEEECCC-------------------CcEeEEecC-CCceeE
Confidence              11223457788888 55544322         13588999998                   777776653 456899


Q ss_pred             EEeCCCCCc-EEEEeecCCeEEEeeec
Q 019059          320 LAWSSREPW-IFASLSYDGRVRNHMLE  345 (346)
Q Consensus       320 ~~~~~~~~~-~l~s~~~d~~v~vw~~~  345 (346)
                      ++|+|||+. +++++..|+.|++||.+
T Consensus       319 ~a~spDG~~~ly~s~~~~~~v~v~D~~  345 (368)
T d1mdah_         319 IIAAQDGASDNYANSAGTEVLDIYDAA  345 (368)
T ss_dssp             EEECCSSSCEEEEEETTTTEEEEEESS
T ss_pred             EEECCCCCEEEEEEeCCCCeEEEEECC
Confidence            999999964 56777889999999975

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.58  E-value=2.7e-13  Score=117.61  Aligned_cols=137  Identities=13%  Similarity=0.135  Sum_probs=93.0

Q ss_pred             CCCeEEEEEecCCCCeEEE--eeeeccccceEEeeecCCCCceEEEEee-----cCCcceEEEEecCcccCCCCCcccee
Q 019059           40 EENEVHLLRLSSGGTELIC--EGLFSHPNEIWDLSSCPFDQRIFSTVFS-----TGESYGAAIWQIPELYGQLNSPQLER  112 (346)
Q Consensus        40 ~~~~i~~~~~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~~~~~~-----~~~d~~i~vw~~~~~~~~~~~~~~~~  112 (346)
                      .++.+.+|+....+.....  ..+..|...|.++.||||+++|+.+...     -+.++.+.+||+.         ..+ 
T Consensus        34 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~---------~~~-  103 (470)
T d2bgra1          34 QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLN---------KRQ-  103 (470)
T ss_dssp             SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT---------TTE-
T ss_pred             cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECC---------CCc-
Confidence            3567888888776543322  2445566889999999999999876311     1345778999998         433 


Q ss_pred             eeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccC-------------CCceeeEEEEeCCC
Q 019059          113 IAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSS-------------GMLHYLSGGAWDPH  179 (346)
Q Consensus       113 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-------------~~~~~v~~~~~~~~  179 (346)
                      +..+..+...+..+.|||||+.++.  ..++.+++|+..++............             ........+.|+||
T Consensus       104 ~~~l~~~~~~~~~~~~SPDG~~ia~--~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPD  181 (470)
T d2bgra1         104 LITEERIPNNTQWVTWSPVGHKLAY--VWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPN  181 (470)
T ss_dssp             ECCSSCCCTTEEEEEECSSTTCEEE--EETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTT
T ss_pred             ccccccCCccccccccccCcceeeE--eecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCC
Confidence            4567788889999999999996333  45789999998876543222111100             01123456789999


Q ss_pred             CCcEEEEec
Q 019059          180 DVNAVAATC  188 (346)
Q Consensus       180 ~~~l~~~~~  188 (346)
                      |+.|+....
T Consensus       182 Gk~ia~~~~  190 (470)
T d2bgra1         182 GTFLAYAQF  190 (470)
T ss_dssp             SSEEEEEEE
T ss_pred             CCccceeEe
Confidence            999888753

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.55  E-value=2.7e-13  Score=113.82  Aligned_cols=232  Identities=12%  Similarity=0.040  Sum_probs=145.0

Q ss_pred             cCCcceEEEEecCcccCCCCCccceeeeeee------------------------------ccCCceEEEEeecCCCCcE
Q 019059           87 TGESYGAAIWQIPELYGQLNSPQLERIAALD------------------------------AHVGKINCVLWWSSGRHDK  136 (346)
Q Consensus        87 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~i~~~~~~~~~~~~~  136 (346)
                      ++.+|.|+||+++         +.+.++++.                              .|.-.......+|||++++
T Consensus        17 gg~sG~V~V~dlp---------S~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lf   87 (441)
T d1qnia2          17 GGHQGEVRVLGVP---------SMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLF   87 (441)
T ss_dssp             CBTTCCEEEEEET---------TTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEE
T ss_pred             CCCCCcEEEEeCC---------CCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEE
Confidence            7889999999987         333333321                              2333455566789999866


Q ss_pred             EEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEe-cCC------------------eEEEEEc
Q 019059          137 LVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT-CES------------------SVQFWDL  197 (346)
Q Consensus       137 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~------------------~i~i~d~  197 (346)
                      ++...++.|.++|+++.+....+...    ......+++|+|+++.+++.+ .+.                  .+..+|.
T Consensus        88 V~d~~~~rVavIDl~t~k~~~ii~iP----~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~  163 (441)
T d1qnia2          88 INDKANTRVARIRLDIMKTDKITHIP----NVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDA  163 (441)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECT----TCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEET
T ss_pred             EEcCCCCEEEEEECCCCcEeeEEecC----CCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecC
Confidence            66667899999999976543333221    123688999999998654432 222                  2355888


Q ss_pred             cCCCccceeeccc-eeEEEeCCCCCcEEEEecCC----------------------------------------CeEEEE
Q 019059          198 RSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADE----------------------------------------SGIHLW  236 (346)
Q Consensus       198 ~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~d----------------------------------------g~i~i~  236 (346)
                      .+.+...++..+. +..++|+|+|++.+++....                                        +.+.++
T Consensus       164 ~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd  243 (441)
T d1qnia2         164 ETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVD  243 (441)
T ss_dssp             TTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEE
T ss_pred             ccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEE
Confidence            8887777666445 88999999999544443221                                        222333


Q ss_pred             EcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccc---
Q 019059          237 DLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDY---  313 (346)
Q Consensus       237 d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  313 (346)
                      +... ...+..+.... ....+.++|+|..+++++..+++|.+||+.+........           ......+.++   
T Consensus       244 ~~~~-~~v~~~IPvgk-sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~-----------~~~~~~~~~~~~~  310 (441)
T d1qnia2         244 GRGE-SEFTRYIPVPK-NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDK-----------IELRDTIVAEPEL  310 (441)
T ss_dssp             CSSS-CSSEEEECCBS-SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTS-----------SCGGGGEEECCBC
T ss_pred             cccC-CceEEEEeCCC-CccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhcc-----------CCcceEEEeeccc
Confidence            3322 23444454433 357799999994445677889999999998621000000           0000111111   


Q ss_pred             cceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          314 EDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       314 ~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      .-......|+++|. .+.+...|..|..|+++
T Consensus       311 glgplh~~fd~~g~-~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         311 GLGPLHTTFDGRGN-AYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             CSCEEEEEECSSSE-EEEEETTTTEEEEEEHH
T ss_pred             ccCcccceecCCce-EEEcccccceEEEeccc
Confidence            11234568999985 88899999999999974

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=4e-11  Score=95.47  Aligned_cols=241  Identities=10%  Similarity=0.109  Sum_probs=144.5

Q ss_pred             eEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCc
Q 019059           43 EVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGK  122 (346)
Q Consensus        43 ~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (346)
                      +|++.+.+..+..    .+..+...+...+|||||+.|+.+... .....+.+.+..          ......+..+...
T Consensus        20 ~l~i~d~dG~~~~----~l~~~~~~~~sP~wSPDGk~IAf~~~~-~~~~~~~~~~~~----------~~~~~~~~~~~~~   84 (269)
T d2hqsa1          20 ELRVSDYDGYNQF----VVHRSPQPLMSPAWSPDGSKLAYVTFE-SGRSALVIQTLA----------NGAVRQVASFPRH   84 (269)
T ss_dssp             EEEEEETTSCSCE----EEEEESSCEEEEEECTTSSEEEEEECT-TSSCEEEEEETT----------TCCEEEEECCSSC
T ss_pred             EEEEEcCCCCCcE----EEecCCCceeeeEECCCCCEEEEEEee-ccCcceeeeecc----------cCceeEEeeeecc
Confidence            5777776554332    233467778899999999999987421 122234444443          2333455567788


Q ss_pred             eEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEe-cCC--eEEEEEccC
Q 019059          123 INCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT-CES--SVQFWDLRS  199 (346)
Q Consensus       123 i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~--~i~i~d~~~  199 (346)
                      .....|+|+|+.+++....++...++............. .   .........+++++..++..+ .++  .|.+.++..
T Consensus        85 ~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~  160 (269)
T d2hqsa1          85 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT-D---GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING  160 (269)
T ss_dssp             EEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECC-C---CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS
T ss_pred             cccceecCCCCeeeEeeecCCccceeecccccccceeee-e---ccccccccccccccccceecccccCCceEeeeeccc
Confidence            899999999997555554444444444332221111111 1   111334456777777666555 344  566666666


Q ss_pred             CCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecC---CC
Q 019059          200 MGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGT---DS  275 (346)
Q Consensus       200 ~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~---d~  275 (346)
                      +.......... .....|+|++..++......+...+|......... .+..+........|+||| +.|+-.+.   ..
T Consensus       161 ~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~p~~SPDG-~~i~f~s~~~~~~  238 (269)
T d2hqsa1         161 GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTFLDETPSLAPNG-TMVIYSSSQGMGS  238 (269)
T ss_dssp             SCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSSSCEEEEECTTS-SEEEEEEEETTEE
T ss_pred             ccceeeecccccccccccccccceeEEEeecCCceeeeEeecccccc-eEeecCccccceEECCCC-CEEEEEEcCCCCc
Confidence            54433322222 77889999999666666666666666555433333 344456667788999999 66653332   34


Q ss_pred             eEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCC
Q 019059          276 TVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS  324 (346)
Q Consensus       276 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  324 (346)
                      .|.++++..                    .....+....+.+...+|+|
T Consensus       239 ~l~~~~~dg--------------------~~~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         239 VLNLVSTDG--------------------RFKARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             EEEEEETTS--------------------CCEEECCCSSSEEEEEEECC
T ss_pred             EEEEEECCC--------------------CCEEEEeCCCCcEEeEEeCC
Confidence            688888886                    33344555566788899998

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.48  E-value=2.4e-12  Score=107.86  Aligned_cols=261  Identities=10%  Similarity=-0.001  Sum_probs=154.6

Q ss_pred             ccCCCCcceEEEeeccc------CCCCeEEEEEecCCCCeEEEee----eeccccceEEeeecCCCCceEEEEeecCCcc
Q 019059           22 VKADTDHTSFLTGTLSL------KEENEVHLLRLSSGGTELICEG----LFSHPNEIWDLSSCPFDQRIFSTVFSTGESY   91 (346)
Q Consensus        22 ~~~~~~~~~~~~g~~~~------~~~~~i~~~~~~~~~~~~~~~~----~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~   91 (346)
                      +.+++++..+++.+...      ..++.|.+|+....+.......    ..........++|+|||++++++   ...++
T Consensus        70 ~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va---~~~~~  146 (368)
T d1mdah_          70 AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFF---LFGSS  146 (368)
T ss_dssp             EEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEE---ECSSS
T ss_pred             ceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEE---eCCCC
Confidence            44677888777764321      2245677776654322111110    00111223468999999999876   35678


Q ss_pred             eEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeec-ccCCCcee
Q 019059           92 GAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK-QSSGMLHY  170 (346)
Q Consensus        92 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~-~~~~~~~~  170 (346)
                      .+.+||+.         ..+.+..+..+...    .+.+.+...+++.+.||.+.++++............ ....+...
T Consensus       147 ~v~~~d~~---------~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (368)
T d1mdah_         147 AAAGLSVP---------GASDDQLTKSASCF----HIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCS  213 (368)
T ss_dssp             CEEEEEET---------TTEEEEEEECSSCC----CCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBC
T ss_pred             eEEEEECC---------CCcEeEEeeccCcc----eEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccc
Confidence            99999998         66777766555433    233445544555577888888887655433222211 11222334


Q ss_pred             eEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceee----------c---cc-eeEEEeCCCCCcEEEEecCC------
Q 019059          171 LSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE----------H---AH-VRNVDYDTKKKHLLVTAADE------  230 (346)
Q Consensus       171 v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~----------~---~~-v~~~~~~~~~~~~l~~~~~d------  230 (346)
                      +....+.+++..+..  .++.+++++...+.......          .   .. ...+++++++..+++....+      
T Consensus       214 ~~~~~~~~~g~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~  291 (368)
T d1mdah_         214 SQAAQANYPGMLVWA--VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLA  291 (368)
T ss_dssp             SCCEEETTTTEEEEC--BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTS
T ss_pred             eeecccccCcEEEEe--cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeec
Confidence            455667766544333  34556666665544221111          0   01 45678888888444432222      


Q ss_pred             --CeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCc-EEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccc
Q 019059          231 --SGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG-FILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLL  307 (346)
Q Consensus       231 --g~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (346)
                        ..|.+||..+ .+.+..+. +...+..++|+|||.. +++++..|+.|++||..+                   ++.+
T Consensus       292 ~~~~v~v~D~~t-~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~t-------------------gk~~  350 (368)
T d1mdah_         292 AAENTSSVTASV-GQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS-------------------DQDQ  350 (368)
T ss_dssp             CEEEEEEEESSS-CCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSS-------------------CEEE
T ss_pred             CCceEEEEECCC-CcEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCC-------------------CCEE
Confidence              3588999987 44566555 4567889999999943 456778899999999998                   7877


Q ss_pred             cccccccceeeEEEe
Q 019059          308 NSYSDYEDSVYGLAW  322 (346)
Q Consensus       308 ~~~~~~~~~v~~~~~  322 (346)
                      ..+..... ...|++
T Consensus       351 ~~i~~g~~-P~~l~~  364 (368)
T d1mdah_         351 SSVELDKG-PESLSV  364 (368)
T ss_dssp             EECCCCSC-CCEEEC
T ss_pred             EEEECCCC-CCEEEE
Confidence            77764433 344444

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=9.7e-11  Score=93.21  Aligned_cols=219  Identities=7%  Similarity=0.010  Sum_probs=126.4

Q ss_pred             eEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCC--eEEEEEcCCCCCCceeeecccCCCce
Q 019059           92 GAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEE--NIFLWSLDCSNKNAQVQSKQSSGMLH  169 (346)
Q Consensus        92 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~  169 (346)
                      .|.|.|.+          +...+.+..+...+...+|||||++++++....+  .+.+.+...+..  .....    +..
T Consensus        20 ~l~i~d~d----------G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~   83 (269)
T d2hqsa1          20 ELRVSDYD----------GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--RQVAS----FPR   83 (269)
T ss_dssp             EEEEEETT----------SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE--EEEEC----CSS
T ss_pred             EEEEEcCC----------CCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce--eEEee----eec
Confidence            46666664          3444455566777889999999998766664443  455556554332  22221    233


Q ss_pred             eeEEEEeCCCCCcEEEEec-CCeEEEEE--ccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcce
Q 019059          170 YLSGGAWDPHDVNAVAATC-ESSVQFWD--LRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPI  245 (346)
Q Consensus       170 ~v~~~~~~~~~~~l~~~~~-d~~i~i~d--~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  245 (346)
                      ......|+|++..++.... ++...++.  .............. .....+++++...+++...++...+|.........
T Consensus        84 ~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~  163 (269)
T d2hqsa1          84 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP  163 (269)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC
T ss_pred             ccccceecCCCCeeeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccc
Confidence            6677899999999887764 33333333  33222222222122 55667777777566666666655555443323344


Q ss_pred             eeecCCCcceEEEEeCCCCCcEEEEe-cCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCC
Q 019059          246 QELPGHTHWTWAVCCNPEYDGFILSA-GTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS  324 (346)
Q Consensus       246 ~~~~~~~~~v~~v~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  324 (346)
                      ..+...........|+|++ ..++.. ...+...+|.....                  .... ....+........|+|
T Consensus       164 ~~~~~~~~~~~~~~~spdg-~~~~~~~~~~~~~~i~~~~~~------------------~~~~-~~~~~~~~~~~p~~SP  223 (269)
T d2hqsa1         164 QRITWEGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLA------------------TGGV-QVLSSTFLDETPSLAP  223 (269)
T ss_dssp             EECCCSSSEEEEEEECTTS-SEEEEEEECSSCEEEEEEETT------------------TCCE-EECCCSSSCEEEEECT
T ss_pred             eeeeccccccccccccccc-ceeEEEeecCCceeeeEeecc------------------cccc-eEeecCccccceEECC
Confidence            4555566777888999999 555554 44455555544430                  1122 2223344467789999


Q ss_pred             CCCcEEEEeecC--CeEEEeeecC
Q 019059          325 REPWIFASLSYD--GRVRNHMLEK  346 (346)
Q Consensus       325 ~~~~~l~s~~~d--~~v~vw~~~~  346 (346)
                      ||++++.+....  ..++++++++
T Consensus       224 DG~~i~f~s~~~~~~~l~~~~~dg  247 (269)
T d2hqsa1         224 NGTMVIYSSSQGMGSVLNLVSTDG  247 (269)
T ss_dssp             TSSEEEEEEEETTEEEEEEEETTS
T ss_pred             CCCEEEEEEcCCCCcEEEEEECCC
Confidence            998655554433  3567777653

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.41  E-value=1.5e-10  Score=91.60  Aligned_cols=236  Identities=11%  Similarity=0.021  Sum_probs=145.6

Q ss_pred             ccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCe
Q 019059           65 PNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEEN  144 (346)
Q Consensus        65 ~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~  144 (346)
                      .-.-.++++.+++...++.   .+..+.+..++...        .......... ......+++++++. ++++....+.
T Consensus        13 ~~~P~~vavd~dG~i~v~~---~~~~~~i~~~~~~~--------~~~~~~~~~~-~~~p~gvav~~~g~-i~v~d~~~~~   79 (260)
T d1rwia_          13 RLSPSGVAVDSAGNVYVTS---EGMYGRVVKLATGS--------TGTTVLPFNG-LYQPQGLAVDGAGT-VYVTDFNNRV   79 (260)
T ss_dssp             CCCEEEEEECTTCCEEEEE---CSSSCEEEEEC------------CEEECCCCS-CCSCCCEEECTTCC-EEEEETTTEE
T ss_pred             cCCCCEEEEcCCCCEEEEE---cCCCCEEEEEcCCC--------ceEEEeccCC-ccCceEEEEcCCCC-EEEeeeeece
Confidence            3445789999998866654   35566777776551        2222222222 23457889999987 3444444455


Q ss_pred             EEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeecc-c-eeEEEeCCCCCc
Q 019059          145 IFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA-H-VRNVDYDTKKKH  222 (346)
Q Consensus       145 i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~-v~~~~~~~~~~~  222 (346)
                      +++++-.+..   .....   .......++++.++++.+++-..+..+..++............+ . ...+++++++. 
T Consensus        80 i~~~~~~~~~---~~~~~---~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-  152 (260)
T d1rwia_          80 VTLAAGSNNQ---TVLPF---DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-  152 (260)
T ss_dssp             EEECTTCSCC---EECCC---CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCC-
T ss_pred             eeeeeeccce---eeeee---eeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCC-
Confidence            5554433221   12111   11235788999998886666555667777776654332221111 2 88999999997 


Q ss_pred             EEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccc
Q 019059          223 LLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQR  302 (346)
Q Consensus       223 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  302 (346)
                      ++++...++.|..+|..... ..............|++.++| .++++....+.|..++...                  
T Consensus       153 ~~v~~~~~~~i~~~d~~~~~-~~~~~~~~~~~p~gi~~d~~g-~l~vsd~~~~~i~~~~~~~------------------  212 (260)
T d1rwia_         153 VYVTDTDNNRVVKLEAESNN-QVVLPFTDITAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGS------------------  212 (260)
T ss_dssp             EEEEEGGGTEEEEECTTTCC-EEECCCSSCCSEEEEEECTTC-CEEEEETTTTEEEEECTTC------------------
T ss_pred             Eeeeccccccccccccccce-eeeeeccccCCCccceeeeee-eeeeeecCCCEEEEEeCCC------------------
Confidence            78887888899999977522 222222344567889999999 8888888888888887664                  


Q ss_pred             ccccccccc-cccceeeEEEeCCCCCcEEEEeecCCeEEEee
Q 019059          303 ANSLLNSYS-DYEDSVYGLAWSSREPWIFASLSYDGRVRNHM  343 (346)
Q Consensus       303 ~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~  343 (346)
                        .....+. ..-....+|+++++|. ++++-..+++|+..+
T Consensus       213 --~~~~~~~~~~~~~P~~i~~d~~g~-l~vad~~~~rI~~i~  251 (260)
T d1rwia_         213 --TTSTVLPFTGLNTPLAVAVDSDRT-VYVADRGNDRVVKLT  251 (260)
T ss_dssp             --SCCEECCCCSCCCEEEEEECTTCC-EEEEEGGGTEEEEEC
T ss_pred             --CeEEEEccCCCCCeEEEEEeCCCC-EEEEECCCCEEEEEe
Confidence              1111111 1223468999999986 788777777777654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.40  E-value=1.4e-10  Score=96.59  Aligned_cols=257  Identities=9%  Similarity=-0.003  Sum_probs=145.4

Q ss_pred             eeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecC
Q 019059           20 SDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIP   99 (346)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~   99 (346)
                      .++.+++++..+.+..     .+.+..+.++.+........ .........+.++++++.++.+.. ....+.+..+.+.
T Consensus        43 s~la~s~d~~~ly~~~-----~~~~~~~~i~~~~~~~~~~~-~~~~~~p~~v~~~~~~~~~~v~~a-~~~~~~v~~~~~~  115 (365)
T d1jofa_          43 SWMTFDHERKNIYGAA-----MKKWSSFAVKSPTEIVHEAS-HPIGGHPRANDADTNTRAIFLLAA-KQPPYAVYANPFY  115 (365)
T ss_dssp             SEEEECTTSSEEEEEE-----BTEEEEEEEEETTEEEEEEE-EECCSSGGGGCTTSCCEEEEEEEC-SSTTCCEEEEEES
T ss_pred             CEEEEcCCCCEEEEEe-----CCcEEEEEEeCCCCeEEEee-ecCCCCcEEEEECCCCCEEEEEEe-cCCCCEEEEeEcc
Confidence            3456677776665542     35677787777654333222 223345667889999886544321 1223444444432


Q ss_pred             cccC-------CCCCccceeeeee-eccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceee
Q 019059          100 ELYG-------QLNSPQLERIAAL-DAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYL  171 (346)
Q Consensus       100 ~~~~-------~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v  171 (346)
                      ....       ............. ......+.++.|+|+|++++++......|.+|+..................-...
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gP  195 (365)
T d1jofa_         116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHP  195 (365)
T ss_dssp             SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred             CCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCce
Confidence            1000       0000000111111 1122347899999999975555544678999887654332222211111223367


Q ss_pred             EEEEeCCCCCcEEEEec-CCeEEEEEccCCCccceeec-------------------cc--eeEEEeCCCCCcEEEEecC
Q 019059          172 SGGAWDPHDVNAVAATC-ESSVQFWDLRSMGKTNSIEH-------------------AH--VRNVDYDTKKKHLLVTAAD  229 (346)
Q Consensus       172 ~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~-------------------~~--v~~~~~~~~~~~~l~~~~~  229 (346)
                      ..++|+|+++++++... ++.|.+|++..++.......                   ..  ...+.++|+|++++++...
T Consensus       196 r~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~  275 (365)
T d1jofa_         196 RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA  275 (365)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred             EEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEccc
Confidence            88999999999887774 78999999876543211110                   00  5678999999955554332


Q ss_pred             C-----CeEEEEEcccCCcceeee-----cCCCcceEEEEeCC-CCCcEEEE-ecCCCeEEEEecCC
Q 019059          230 E-----SGIHLWDLRMLKAPIQEL-----PGHTHWTWAVCCNP-EYDGFILS-AGTDSTVNLWLVST  284 (346)
Q Consensus       230 d-----g~i~i~d~~~~~~~~~~~-----~~~~~~v~~v~~~~-~~~~~l~s-~~~d~~i~iwd~~~  284 (346)
                      +     +.|..|++..........     .........++++| +| ++|++ ...++.|.+|+++.
T Consensus       276 ~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G-~~l~va~~~s~~v~v~~~~~  341 (365)
T d1jofa_         276 NKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD-EWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             SSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT-TEEEEECSSSCEEEEEEEET
T ss_pred             CCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCC-CEEEEEeCCCCeEEEEEEeC
Confidence            2     347778776533211111     12234567799998 67 65554 45678999998875

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.34  E-value=1.7e-09  Score=87.46  Aligned_cols=227  Identities=11%  Similarity=0.005  Sum_probs=146.4

Q ss_pred             ceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEE
Q 019059           67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIF  146 (346)
Q Consensus        67 ~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~  146 (346)
                      .+..++++|+|+.+++.    ..++.|..|+..          ++ ...+......+.+++|.++|+ ++++...++.+.
T Consensus        29 ~~e~iAv~pdG~l~vt~----~~~~~I~~i~p~----------g~-~~~~~~~~~~~~gla~~~dG~-l~v~~~~~~~~~   92 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTN----HEVGEIVSITPD----------GN-QQIHATVEGKVSGLAFTSNGD-LVATGWNADSIP   92 (302)
T ss_dssp             CEEEEEECTTSCEEEEE----TTTTEEEEECTT----------CC-EEEEEECSSEEEEEEECTTSC-EEEEEECTTSCE
T ss_pred             CcCCEEECCCCCEEEEe----CCCCEEEEEeCC----------CC-EEEEEcCCCCcceEEEcCCCC-eEEEecCCceEE
Confidence            57789999999866653    567777777643          22 233445567899999999998 566666678888


Q ss_pred             EEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeec---------c-c--eeEE
Q 019059          147 LWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH---------A-H--VRNV  214 (346)
Q Consensus       147 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---------~-~--v~~~  214 (346)
                      .++..............  ........+++.++++.+++...++.+..+|...+........         . .  ...+
T Consensus        93 ~~~~~~~~~~~~~~~~~--~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi  170 (302)
T d2p4oa1          93 VVSLVKSDGTVETLLTL--PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL  170 (302)
T ss_dssp             EEEEECTTSCEEEEEEC--TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE
T ss_pred             EEEecccccceeecccc--CCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccc
Confidence            88876544332222211  1223578899999998877777788888888876642221111         1 1  6667


Q ss_pred             EeCCCCCcEEEEecCCCeEEEEEcccCCcce-eeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcc
Q 019059          215 DYDTKKKHLLVTAADESGIHLWDLRMLKAPI-QELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSE  293 (346)
Q Consensus       215 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  293 (346)
                      .++.  ..++++....+.|..+++....... ............++++++| .++++...++.|..++...         
T Consensus       171 ~~~~--~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG-~l~va~~~~~~V~~i~p~G---------  238 (302)
T d2p4oa1         171 KRFG--NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEG-NLYGATHIYNSVVRIAPDR---------  238 (302)
T ss_dssp             EEET--TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTC-CEEEECBTTCCEEEECTTC---------
T ss_pred             cccC--CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCC-CEEEEEcCCCcEEEECCCC---------
Confidence            7654  3478888888999999877533211 1111123445779999999 8888877888899887764         


Q ss_pred             cccCCccccccccccccccccceeeEEEe---CCCCCcEEEE
Q 019059          294 SLVESPNQRANSLLNSYSDYEDSVYGLAW---SSREPWIFAS  332 (346)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~l~s  332 (346)
                               ....+......-...++++|   ++|++.++++
T Consensus       239 ---------~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvt  271 (302)
T d2p4oa1         239 ---------STTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVV  271 (302)
T ss_dssp             ---------CEEEEECGGGTCTTEEEEEECCSTTTTTEEEEE
T ss_pred             ---------CEEEEEecCCCCCCceEEEEcCCCCCCCEEEEE
Confidence                     01122223223334789999   6677644444

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.30  E-value=9.6e-11  Score=101.22  Aligned_cols=136  Identities=8%  Similarity=0.004  Sum_probs=95.4

Q ss_pred             EeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeee-----eeeccCCceEEEEeecCCCCcEEEEe----
Q 019059           70 DLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIA-----ALDAHVGKINCVLWWSSGRHDKLVSI----  140 (346)
Q Consensus        70 ~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~~----  140 (346)
                      .+.|.++++++..      .++.+.+||+.         .++...     .+..|...|.++.||||++++++++.    
T Consensus        21 ~~~W~~d~~~~~~------~~~~~~~~~~~---------t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~   85 (470)
T d2bgra1          21 SLRWISDHEYLYK------QENNILVFNAE---------YGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQ   85 (470)
T ss_dssp             CCEECSSSEEEEE------SSSCEEEEETT---------TCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEEC
T ss_pred             CCEeCCCCEEEEE------cCCcEEEEECC---------CCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcce
Confidence            5789998875543      56789999998         333333     33455678999999999997555542    


Q ss_pred             ----cCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc------
Q 019059          141 ----DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH------  210 (346)
Q Consensus       141 ----~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~------  210 (346)
                          .++.+.+||+.+++.. .     ...+...+..+.|+|||+.++.. .++.+++|+..+++.......+.      
T Consensus        86 ~r~s~~~~~~l~d~~~~~~~-~-----l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~  158 (470)
T d2bgra1          86 WRHSYTASYDIYDLNKRQLI-T-----EERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYN  158 (470)
T ss_dssp             SSSCEEEEEEEEETTTTEEC-C-----SSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEE
T ss_pred             eeeccCceEEEEECCCCccc-c-----cccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccc
Confidence                2468899999876421 1     12344578899999999999986 46789999999887543322110      


Q ss_pred             --------------eeEEEeCCCCCcEEEEec
Q 019059          211 --------------VRNVDYDTKKKHLLVTAA  228 (346)
Q Consensus       211 --------------v~~~~~~~~~~~~l~~~~  228 (346)
                                    ...+.|+|||+ .|+...
T Consensus       159 g~~d~~~~~~~~~~~~~~~wSPDGk-~ia~~~  189 (470)
T d2bgra1         159 GITDWVYEEEVFSAYSALWWSPNGT-FLAYAQ  189 (470)
T ss_dssp             SBCCHHHHHHTSSSSBCEEECTTSS-EEEEEE
T ss_pred             cccceeeeeeecCCccccEECCCCC-ccceeE
Confidence                          45678999999 555543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.28  E-value=8.6e-09  Score=83.58  Aligned_cols=245  Identities=9%  Similarity=-0.014  Sum_probs=148.6

Q ss_pred             ceEEeeecCCCCceEEEEee---cCCcceEEEEecCcccCCCCCccceeeeeee----ccCCceEEEEeecCCCCcEEEE
Q 019059           67 EIWDLSSCPFDQRIFSTVFS---TGESYGAAIWQIPELYGQLNSPQLERIAALD----AHVGKINCVLWWSSGRHDKLVS  139 (346)
Q Consensus        67 ~v~~~~~~~~~~~l~~~~~~---~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~  139 (346)
                      ....++|.|+|+.+++....   ...++.|..||..         .........    .....-..+.|.+++.. ++++
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~---------~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~-l~va   88 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLK---------TGKKTVICKPEVNGYGGIPAGCQCDRDANQ-LFVA   88 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTT---------TCCEEEEECCEETTEECCEEEEEECSSSSE-EEEE
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECC---------CCcEEEEECCccccCCCcceeEEEeCCCCE-EEEE
Confidence            35667899999866653100   0113567777765         222211111    11223568999999984 4455


Q ss_pred             ecCCeEEEEEcCCCCCCceeeecccCC-CceeeEEEEeCCCCCcEEEEec---------------CCeEEEEEccCCCcc
Q 019059          140 IDEENIFLWSLDCSNKNAQVQSKQSSG-MLHYLSGGAWDPHDVNAVAATC---------------ESSVQFWDLRSMGKT  203 (346)
Q Consensus       140 ~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~---------------d~~i~i~d~~~~~~~  203 (346)
                      ...+.|...+.+....  .+......+ .....+.+++.++|...++-..               .|.|..++.. ++..
T Consensus        89 d~~~~i~~~~~~g~~~--~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~  165 (314)
T d1pjxa_          89 DMRLGLLVVQTDGTFE--EIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI  165 (314)
T ss_dssp             ETTTEEEEEETTSCEE--ECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE
T ss_pred             ECCCeEEEEeCCCcEE--EEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-Ccee
Confidence            4456788888764321  111111111 1224678899999876665421               2345444433 3322


Q ss_pred             ceeeccc-eeEEEeCCCCC----cEEEEecCCCeEEEEEcccCCcce-----eeecC-CCcceEEEEeCCCCCcEEEEec
Q 019059          204 NSIEHAH-VRNVDYDTKKK----HLLVTAADESGIHLWDLRMLKAPI-----QELPG-HTHWTWAVCCNPEYDGFILSAG  272 (346)
Q Consensus       204 ~~~~~~~-v~~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~-----~~~~~-~~~~v~~v~~~~~~~~~l~s~~  272 (346)
                      ....... .+.++|+|+++    .++++-+..+.|..||+.......     ..+.. .......+++.++| ++.++..
T Consensus       166 ~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~G-nlyVa~~  244 (314)
T d1pjxa_         166 QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDN-NLLVANW  244 (314)
T ss_dssp             EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTC-CEEEEEE
T ss_pred             EeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCC-cEEEEEc
Confidence            2222111 77899988764    366666778899999987533221     11111 22345679999999 7777776


Q ss_pred             CCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059          273 TDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       273 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~  344 (346)
                      ..+.|.+||...                   ++.+..+......+++++|.|+++.++++.+.+++|...++
T Consensus       245 ~~g~I~~~dp~~-------------------g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~  297 (314)
T d1pjxa_         245 GSSHIEVFGPDG-------------------GQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             TTTEEEEECTTC-------------------BSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred             CCCEEEEEeCCC-------------------CEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEEC
Confidence            778999999886                   55555555545568999999998768888888898887765

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.25  E-value=1.6e-08  Score=80.59  Aligned_cols=233  Identities=10%  Similarity=0.088  Sum_probs=150.3

Q ss_pred             ceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeec------cCCceEEEEeecCCCCcEEEE-
Q 019059           67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA------HVGKINCVLWWSSGRHDKLVS-  139 (346)
Q Consensus        67 ~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~~~~-  139 (346)
                      ....+++.|+++.+++    ......|++||.+          ++.+..+..      ....-..+.+.++....+++. 
T Consensus        24 ~P~gvavd~dg~i~Va----D~~n~rI~v~d~~----------G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~   89 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVA----DTNNHRIQIFDKE----------GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTER   89 (279)
T ss_dssp             CEEEEEECTTCCEEEE----EGGGTEEEEECTT----------SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEEC
T ss_pred             CccEEEEcCCCCEEEE----ECCCCEEEEEeCC----------CCEEEEecccCCCcccccccccccccccccccceecc
Confidence            3578999998875544    3456789999864          344444321      111234566655544334443 


Q ss_pred             ecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeecc-c---eeEEE
Q 019059          140 IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA-H---VRNVD  215 (346)
Q Consensus       140 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~---v~~~~  215 (346)
                      +.++.|..++.. +...... .   .........+++.+++..+++....+.+.+++.. ++.+..+... +   ...++
T Consensus        90 ~~~~~i~~~~~~-g~~~~~~-~---~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~  163 (279)
T d1q7fa_          90 SPTHQIQIYNQY-GQFVRKF-G---ATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVV  163 (279)
T ss_dssp             GGGCEEEEECTT-SCEEEEE-C---TTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEE
T ss_pred             CCcccccccccc-ccceeec-C---CCcccccceeccccCCcEEEEeeccceeeEeccC-Cceeecccccccccccceee
Confidence            446677777754 2211111 1   1223356788999988877777777788888755 4444444312 2   88899


Q ss_pred             eCCCCCcEEEEecCCCeEEEEEcccCCcceeeec--CCCcceEEEEeCCCCCcEEEEecC-CCeEEEEecCCCCCCCCCc
Q 019059          216 YDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP--GHTHWTWAVCCNPEYDGFILSAGT-DSTVNLWLVSTSNHDELPS  292 (346)
Q Consensus       216 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~v~~v~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~  292 (346)
                      +.+++. ++++....+.|++||..  ...+.++.  +.......|++.++| +++++-.. ++.|.+|+..         
T Consensus       164 ~d~~g~-i~v~d~~~~~V~~~d~~--G~~~~~~g~~g~~~~P~giavD~~G-~i~Vad~~~~~~v~~f~~~---------  230 (279)
T d1q7fa_         164 VNDKQE-IFISDNRAHCVKVFNYE--GQYLRQIGGEGITNYPIGVGINSNG-EILIADNHNNFNLTIFTQD---------  230 (279)
T ss_dssp             ECSSSE-EEEEEGGGTEEEEEETT--CCEEEEESCTTTSCSEEEEEECTTC-CEEEEECSSSCEEEEECTT---------
T ss_pred             ecccee-EEeeeccccceeeeecC--CceeeeecccccccCCcccccccCC-eEEEEECCCCcEEEEECCC---------
Confidence            999987 88888888999999976  34555553  344567899999999 76666543 4579999854         


Q ss_pred             ccccCCcccccccccccccc--ccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          293 ESLVESPNQRANSLLNSYSD--YEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                                 ++.+..+..  .....+.|++.|+|. +++ .+.+.+|++|...
T Consensus       231 -----------G~~~~~~~~~~~~~~p~~vav~~dG~-l~V-~~~n~~v~~fr~~  272 (279)
T d1q7fa_         231 -----------GQLISALESKVKHAQCFDVALMDDGS-VVL-ASKDYRLYIYRYV  272 (279)
T ss_dssp             -----------SCEEEEEEESSCCSCEEEEEEETTTE-EEE-EETTTEEEEEECS
T ss_pred             -----------CCEEEEEeCCCCCCCEeEEEEeCCCc-EEE-EeCCCeEEEEEee
Confidence                       455544432  223478899999985 555 4578999999754

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.20  E-value=9.2e-08  Score=77.60  Aligned_cols=229  Identities=10%  Similarity=-0.008  Sum_probs=139.0

Q ss_pred             cceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEec----
Q 019059           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSID----  141 (346)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~----  141 (346)
                      ..+..++|.++++ |..+   .-..+.|..|+.+         ..+....+.........+++.++|+ ++++...    
T Consensus        40 ~~lEG~~~D~~G~-Ly~~---D~~~g~I~ri~p~---------g~~~~~~~~~~~~~p~gla~~~dG~-l~va~~~~~~~  105 (319)
T d2dg1a1          40 LQLEGLNFDRQGQ-LFLL---DVFEGNIFKINPE---------TKEIKRPFVSHKANPAAIKIHKDGR-LFVCYLGDFKS  105 (319)
T ss_dssp             CCEEEEEECTTSC-EEEE---ETTTCEEEEECTT---------TCCEEEEEECSSSSEEEEEECTTSC-EEEEECTTSSS
T ss_pred             cCcEeCEECCCCC-EEEE---ECCCCEEEEEECC---------CCeEEEEEeCCCCCeeEEEECCCCC-EEEEecCCCcc
Confidence            3456899999887 4443   3466788888765         2333333444556678999999997 3444422    


Q ss_pred             CCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec------CCeEEEEEccCCCccceeecc-c-eeE
Q 019059          142 EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC------ESSVQFWDLRSMGKTNSIEHA-H-VRN  213 (346)
Q Consensus       142 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~-~-v~~  213 (346)
                      .+.+...+..... ...... . .........+++.++|+..++...      .+.+..++...+. +..+... . .+.
T Consensus       106 ~~~i~~~~~~~~~-~~~~~~-~-~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~~~~pnG  181 (319)
T d2dg1a1         106 TGGIFAATENGDN-LQDIIE-D-LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNISVANG  181 (319)
T ss_dssp             CCEEEEECTTSCS-CEEEEC-S-SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEESSEEE
T ss_pred             ceeEEEEcCCCce-eeeecc-C-CCcccCCcceeEEeccceeecccccccccCcceeEEEecccce-eEEEeeccceeee
Confidence            2334444444322 112211 1 112235788999999985555332      2345555554333 2322212 2 889


Q ss_pred             EEeCCCCCcEEEEecCCCeEEEEEcccCCcceeee-------cCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCC
Q 019059          214 VDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL-------PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSN  286 (346)
Q Consensus       214 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~  286 (346)
                      ++|+|+++.++++-+..+.|..||+..........       .........+++.++| ++.++....+.|.+||..   
T Consensus       182 ia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G-~l~Va~~~~g~V~~~~p~---  257 (319)
T d2dg1a1         182 IALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDD-NLYVAMYGQGRVLVFNKR---  257 (319)
T ss_dssp             EEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTC-CEEEEEETTTEEEEECTT---
T ss_pred             eeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCC-CEEEEEcCCCEEEEECCC---
Confidence            99999998566777778899999987533222111       1112335679999999 887877788999999964   


Q ss_pred             CCCCCcccccCCccccccccccccc------cccceeeEEEeCCCCCcEEEEe
Q 019059          287 HDELPSESLVESPNQRANSLLNSYS------DYEDSVYGLAWSSREPWIFASL  333 (346)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~s~  333 (346)
                                       ++.+..+.      ++...+++++|.|....++++.
T Consensus       258 -----------------G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         258 -----------------GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             -----------------SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred             -----------------CcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEc
Confidence                             45444332      3344578999999876444443

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.18  E-value=5.3e-08  Score=78.07  Aligned_cols=228  Identities=8%  Similarity=-0.012  Sum_probs=149.7

Q ss_pred             EEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEE
Q 019059           69 WDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLW  148 (346)
Q Consensus        69 ~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vw  148 (346)
                      .+..|.+.+..|.-+   .-..+.|..||.+         ..+. ..+ .....+.++++.+++.  +++++. ..+.++
T Consensus        21 Egp~wd~~~~~l~wv---Di~~~~I~r~d~~---------~g~~-~~~-~~~~~~~~i~~~~dg~--l~va~~-~gl~~~   83 (295)
T d2ghsa1          21 EGPTFDPASGTAWWF---NILERELHELHLA---------SGRK-TVH-ALPFMGSALAKISDSK--QLIASD-DGLFLR   83 (295)
T ss_dssp             EEEEEETTTTEEEEE---EGGGTEEEEEETT---------TTEE-EEE-ECSSCEEEEEEEETTE--EEEEET-TEEEEE
T ss_pred             eCCeEECCCCEEEEE---ECCCCEEEEEECC---------CCeE-EEE-ECCCCcEEEEEecCCC--EEEEEe-CccEEe
Confidence            356788766666654   2356788888876         3322 223 2345788999999987  455554 568899


Q ss_pred             EcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec----CCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcE
Q 019059          149 SLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC----ESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHL  223 (346)
Q Consensus       149 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~  223 (346)
                      |..+++. ..+...........++.+.+.|+|+..++...    .+.-.+|.+..++.......-. .+.++|++++..+
T Consensus        84 d~~tg~~-~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l  162 (295)
T d2ghsa1          84 DTATGVL-TLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTG  162 (295)
T ss_dssp             ETTTCCE-EEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEE
T ss_pred             eccccee-eEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceE
Confidence            9887653 22222222233457899999999987666543    2345667776665443333222 8899999999867


Q ss_pred             EEEecCCCeEEEEEcccCCc-----c--eeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCccccc
Q 019059          224 LVTAADESGIHLWDLRMLKA-----P--IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLV  296 (346)
Q Consensus       224 l~~~~~dg~i~i~d~~~~~~-----~--~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  296 (346)
                      +++-+..+.|..|++.....     .  ...+.+.......+++..+| ++.++.-..+.|..||..             
T Consensus       163 ~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~G-nlWva~~~~g~V~~~dp~-------------  228 (295)
T d2ghsa1         163 YFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEG-HIWNARWGEGAVDRYDTD-------------  228 (295)
T ss_dssp             EEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTS-CEEEEEETTTEEEEECTT-------------
T ss_pred             EEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCC-CEEeeeeCCCceEEecCC-------------
Confidence            77778888999998753211     1  11222334567889999999 766666567789999965             


Q ss_pred             CCccccccccccccccccceeeEEEeC-CCCCcEEEEeec
Q 019059          297 ESPNQRANSLLNSYSDYEDSVYGLAWS-SREPWIFASLSY  335 (346)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~s~~~  335 (346)
                             ++.+..+.-....+++++|- |+.+.+++|...
T Consensus       229 -------G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         229 -------GNHIARYEVPGKQTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             -------CCEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             -------CcEeeEecCCCCceEEEEEeCCCCCEEEEEECC
Confidence                   56666665544568999995 676667777654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.10  E-value=9e-09  Score=81.17  Aligned_cols=196  Identities=10%  Similarity=-0.023  Sum_probs=122.7

Q ss_pred             CceEEEEeecCCCCcEEEE-ecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccC
Q 019059          121 GKINCVLWWSSGRHDKLVS-IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRS  199 (346)
Q Consensus       121 ~~i~~~~~~~~~~~~~~~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~  199 (346)
                      ..-..+++.++|. ++++. +..+.+..++......  ......   -......+++++++..+++....+.+++++..+
T Consensus        14 ~~P~~vavd~dG~-i~v~~~~~~~~i~~~~~~~~~~--~~~~~~---~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~   87 (260)
T d1rwia_          14 LSPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGT--TVLPFN---GLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSN   87 (260)
T ss_dssp             CCEEEEEECTTCC-EEEEECSSSCEEEEEC----CE--EECCCC---SCCSCCCEEECTTCCEEEEETTTEEEEECTTCS
T ss_pred             CCCCEEEEcCCCC-EEEEEcCCCCEEEEEcCCCceE--EEeccC---CccCceEEEEcCCCCEEEeeeeeceeeeeeecc
Confidence            3457999999998 45555 4457777776654321  111111   122457889999887655555556666665554


Q ss_pred             CCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEE
Q 019059          200 MGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVN  278 (346)
Q Consensus       200 ~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~  278 (346)
                      ........... +.++++++++. ++++-..+..+..++............ .......++++|++ .++++...++.|.
T Consensus        88 ~~~~~~~~~~~~p~~iavd~~g~-i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~~~~g-~~~v~~~~~~~i~  164 (260)
T d1rwia_          88 NQTVLPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLPFT-GLNDPDGVAVDNSG-NVYVTDTDNNRVV  164 (260)
T ss_dssp             CCEECCCCSCCSEEEEEECTTCC-EEEEEGGGTEEEEECTTCSSCEECCCC-SCCSCCEEEECTTC-CEEEEEGGGTEEE
T ss_pred             ceeeeeeeeeeecccccccccce-eEeeccccccccccccccceeeeeeec-ccCCcceeeecCCC-CEeeecccccccc
Confidence            44443333223 89999999997 777766667787777654221111112 23455789999999 8888888888999


Q ss_pred             EEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          279 LWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       279 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      .+|...                   ..........-.....|+++++|. ++++....+.|..++.+
T Consensus       165 ~~d~~~-------------------~~~~~~~~~~~~~p~gi~~d~~g~-l~vsd~~~~~i~~~~~~  211 (260)
T d1rwia_         165 KLEAES-------------------NNQVVLPFTDITAPWGIAVDEAGT-VYVTEHNTNQVVKLLAG  211 (260)
T ss_dssp             EECTTT-------------------CCEEECCCSSCCSEEEEEECTTCC-EEEEETTTTEEEEECTT
T ss_pred             cccccc-------------------ceeeeeeccccCCCccceeeeeee-eeeeecCCCEEEEEeCC
Confidence            999875                   222221122334468899999986 88888778888877653

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1.4e-07  Score=80.53  Aligned_cols=283  Identities=10%  Similarity=0.044  Sum_probs=148.5

Q ss_pred             CCCCcceEEEeeccc-----CCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEec
Q 019059           24 ADTDHTSFLTGTLSL-----KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQI   98 (346)
Q Consensus        24 ~~~~~~~~~~g~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~   98 (346)
                      ++++...+++.+...     ...+.+.++++........ .........+....|||+|+.++.+     .++.|.+.+.
T Consensus        68 ~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l-~~~~~~~~~l~~~~wSPDG~~iafv-----~~~nl~~~~~  141 (465)
T d1xfda1          68 ISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSL-DPPEVSNAKLQYAGWGPKGQQLIFI-----FENNIYYCAH  141 (465)
T ss_dssp             ECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEEC-CCTTCCSCCCSBCCBCSSTTCEEEE-----ETTEEEEESS
T ss_pred             ECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeec-cCccCCccccceeeeccCCceEEEE-----ecceEEEEec
Confidence            566776666654322     2345677777766432211 1122233456678999999999887     4556777666


Q ss_pred             CcccCCCCCccceeeeee-eccCC-----------------ceEEEEeecCCCCcEEEEecCCeEEEEEcC---------
Q 019059           99 PELYGQLNSPQLERIAAL-DAHVG-----------------KINCVLWWSSGRHDKLVSIDEENIFLWSLD---------  151 (346)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~-~~~~~-----------------~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~---------  151 (346)
                      ..         ...++.. .+...                 .-.++.|||||+++++...++..|..+.+.         
T Consensus       142 ~~---------~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~  212 (465)
T d1xfda1         142 VG---------KQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPT  212 (465)
T ss_dssp             SS---------SCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCC
T ss_pred             CC---------CceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccce
Confidence            52         1221111 11111                 124778999999866665555555444432         


Q ss_pred             ------------------------CCCCCceeeecc-cCCCceeeEEEEeCCCCCcEEEEec-C---CeEEEEEccCCCc
Q 019059          152 ------------------------CSNKNAQVQSKQ-SSGMLHYLSGGAWDPHDVNAVAATC-E---SSVQFWDLRSMGK  202 (346)
Q Consensus       152 ------------------------~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~-d---~~i~i~d~~~~~~  202 (346)
                                              ++.......... .......+..+.|.|+++.++.... +   ..+.++|..+++.
T Consensus       213 ~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~  292 (465)
T d1xfda1         213 VKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVC  292 (465)
T ss_dssp             CEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCE
T ss_pred             eeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcE
Confidence                                    211111000000 0111224677899998876555543 2   3688899998876


Q ss_pred             cceeeccc-------eeEEEeCCCCCcEEEE-ec-CCC--eEEEEEccc-----CCcceeeecCCCcceEEE-EeCCCCC
Q 019059          203 TNSIEHAH-------VRNVDYDTKKKHLLVT-AA-DES--GIHLWDLRM-----LKAPIQELPGHTHWTWAV-CCNPEYD  265 (346)
Q Consensus       203 ~~~~~~~~-------v~~~~~~~~~~~~l~~-~~-~dg--~i~i~d~~~-----~~~~~~~~~~~~~~v~~v-~~~~~~~  265 (346)
                      ...+....       -....|+|+|..+++. .+ .+|  .++..++..     ....+..+....-.|..+ .|++++.
T Consensus       293 ~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~  372 (465)
T d1xfda1         293 TKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGN  372 (465)
T ss_dssp             EEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTT
T ss_pred             EEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCC
Confidence            55443211       2356889999854332 22 222  344444321     122344455445556665 5888874


Q ss_pred             cEEEEecCCC--eEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeec
Q 019059          266 GFILSAGTDS--TVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSY  335 (346)
Q Consensus       266 ~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  335 (346)
                      .+.+++..++  .-+||.+......              ..+++...........++.|||++++++.+++.
T Consensus       373 ~vyF~a~~~~p~~~hly~v~l~g~~--------------~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~  430 (465)
T d1xfda1         373 KIYFLSTEDLPRRRQLYSANTVGNF--------------NRQCLSCDLVENCTYFSASFSHSMDFFLLKCEG  430 (465)
T ss_dssp             EEEEEESSSCTTCCEEEEECSSTTC--------------CCBCSSTTSSSSCCCCEEEECTTSSEEEEECCS
T ss_pred             EEEEEEeCCCCCceEEEEEECCCCC--------------cceeeccccCCCCCEEEEEECCCCCEEEEEeec
Confidence            4445665543  3456665531000              012222112233346789999999865555543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.03  E-value=5.6e-08  Score=78.32  Aligned_cols=204  Identities=10%  Similarity=-0.012  Sum_probs=130.0

Q ss_pred             ceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecC
Q 019059          110 LERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE  189 (346)
Q Consensus       110 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  189 (346)
                      .+.+..+... ..+..+++.|||+ ++++...+++|..++....  ......     ....+.+++|.++++.+++...+
T Consensus        18 ~~v~~~~p~~-~~~e~iAv~pdG~-l~vt~~~~~~I~~i~p~g~--~~~~~~-----~~~~~~gla~~~dG~l~v~~~~~   88 (302)
T d2p4oa1          18 AKIITSFPVN-TFLENLASAPDGT-IFVTNHEVGEIVSITPDGN--QQIHAT-----VEGKVSGLAFTSNGDLVATGWNA   88 (302)
T ss_dssp             EEEEEEECTT-CCEEEEEECTTSC-EEEEETTTTEEEEECTTCC--EEEEEE-----CSSEEEEEEECTTSCEEEEEECT
T ss_pred             ccEEEECCCC-CCcCCEEECCCCC-EEEEeCCCCEEEEEeCCCC--EEEEEc-----CCCCcceEEEcCCCCeEEEecCC
Confidence            3444455332 3578899999998 4555566888888886532  222211     22378999999999988887788


Q ss_pred             CeEEEEEccCCCccc-eee---ccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeee---------cCCCcce
Q 019059          190 SSVQFWDLRSMGKTN-SIE---HAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL---------PGHTHWT  255 (346)
Q Consensus       190 ~~i~i~d~~~~~~~~-~~~---~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---------~~~~~~v  255 (346)
                      +.+..++........ .+.   ... .+.+++.+++. ++++.+.++.+..+|.......+...         .......
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~-~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (302)
T d2p4oa1          89 DSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAA  167 (302)
T ss_dssp             TSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSE-EEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSE
T ss_pred             ceEEEEEecccccceeeccccCCccccceeEEccCCC-EEeeccccccceeeeccCCcceeEecCCccceeeccCccccc
Confidence            888888876544222 111   122 88999999997 78888888888888876422111111         1112234


Q ss_pred             EEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccc--cccccceeeEEEeCCCCCcEEEEe
Q 019059          256 WAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNS--YSDYEDSVYGLAWSSREPWIFASL  333 (346)
Q Consensus       256 ~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~  333 (346)
                      ..+.++.+  .++++.+..+.|..++...                   ......  ..........++++++|. ++++.
T Consensus       168 ngi~~~~~--~l~~~~~~~~~i~~~~~~~-------------------~~~~~~~~~~~~~~~pdgia~d~dG~-l~va~  225 (302)
T d2p4oa1         168 NGLKRFGN--FLYVSNTEKMLLLRIPVDS-------------------TDKPGEPEIFVEQTNIDDFAFDVEGN-LYGAT  225 (302)
T ss_dssp             EEEEEETT--EEEEEETTTTEEEEEEBCT-------------------TSCBCCCEEEEESCCCSSEEEBTTCC-EEEEC
T ss_pred             ccccccCC--ceeeecCCCCeEEeccccc-------------------cccccccccccCCCCCcceEECCCCC-EEEEE
Confidence            55666542  5667777788898888775                   111111  001122356799999997 77887


Q ss_pred             ecCCeEEEeeec
Q 019059          334 SYDGRVRNHMLE  345 (346)
Q Consensus       334 ~~d~~v~vw~~~  345 (346)
                      ..++.|..++.+
T Consensus       226 ~~~~~V~~i~p~  237 (302)
T d2p4oa1         226 HIYNSVVRIAPD  237 (302)
T ss_dssp             BTTCCEEEECTT
T ss_pred             cCCCcEEEECCC
Confidence            778888888754

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=8.1e-08  Score=82.10  Aligned_cols=215  Identities=14%  Similarity=0.152  Sum_probs=121.5

Q ss_pred             CCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEee-----cCCcceEEEEecCcccCCCCCccceeee
Q 019059           40 EENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFS-----TGESYGAAIWQIPELYGQLNSPQLERIA  114 (346)
Q Consensus        40 ~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~-----~~~d~~i~vw~~~~~~~~~~~~~~~~~~  114 (346)
                      .++.+.+++..............-..-.+....||||+++++.....     -+..+.+.++|+..       ...+.+.
T Consensus        35 ~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~-------~~~~~l~  107 (465)
T d1xfda1          35 QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH-------GDPQSLD  107 (465)
T ss_dssp             SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS-------CCCEECC
T ss_pred             CCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC-------Cceeecc
Confidence            45667777776655444333222233466778899999998775310     02346788889872       1223332


Q ss_pred             eeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCC--------------ceeeEEEEeCCCC
Q 019059          115 ALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGM--------------LHYLSGGAWDPHD  180 (346)
Q Consensus       115 ~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~--------------~~~v~~~~~~~~~  180 (346)
                      ........+....|||||++++++.  ++.|.+.+..++........ ...+.              ...-.++.|+|||
T Consensus       108 ~~~~~~~~l~~~~wSPDG~~iafv~--~~nl~~~~~~~~~~~~lt~~-g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDg  184 (465)
T d1xfda1         108 PPEVSNAKLQYAGWGPKGQQLIFIF--ENNIYYCAHVGKQAIRVVST-GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG  184 (465)
T ss_dssp             CTTCCSCCCSBCCBCSSTTCEEEEE--TTEEEEESSSSSCCEEEECC-CBTTTEEEEECCHHHHHTTSSSSEEEEECTTS
T ss_pred             CccCCccccceeeeccCCceEEEEe--cceEEEEecCCCceEEEecc-cCcceeeccccchhhhhhhccccceEEECCCC
Confidence            2333345566789999999755543  78899888876543222211 11110              0112467799999


Q ss_pred             CcEEEEec-CC---------------------------------eEEEEEccCCCccceee-------ccc-eeEEEeCC
Q 019059          181 VNAVAATC-ES---------------------------------SVQFWDLRSMGKTNSIE-------HAH-VRNVDYDT  218 (346)
Q Consensus       181 ~~l~~~~~-d~---------------------------------~i~i~d~~~~~~~~~~~-------~~~-v~~~~~~~  218 (346)
                      +.|+.... +.                                 .+.++|+.++.......       ..+ +..+.|+|
T Consensus       185 k~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~  264 (465)
T d1xfda1         185 TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWAT  264 (465)
T ss_dssp             SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESS
T ss_pred             CeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcC
Confidence            99987642 11                                 25566666544322111       112 78899999


Q ss_pred             CCCcEEEE-ecCC---CeEEEEEcccCCcceeeecC-CCcce----EEEEeCCCCCc
Q 019059          219 KKKHLLVT-AADE---SGIHLWDLRMLKAPIQELPG-HTHWT----WAVCCNPEYDG  266 (346)
Q Consensus       219 ~~~~~l~~-~~~d---g~i~i~d~~~~~~~~~~~~~-~~~~v----~~v~~~~~~~~  266 (346)
                      +++ +++. ...+   ..+.++|..+ +.....+.. ...+|    ....|+|+|..
T Consensus       265 d~~-~~~~~~nR~q~~~~i~~~d~~t-g~~~~~~~e~~~~wv~~~~~~p~~~~dg~~  319 (465)
T d1xfda1         265 STK-VAVTWLNRAQNVSILTLCDATT-GVCTKKHEDESEAWLHRQNEEPVFSKDGRK  319 (465)
T ss_dssp             SSE-EEEEEEETTSCEEEEEEEETTT-CCEEEEEEEECSSCCCCCCCCCEECTTSCS
T ss_pred             CCe-EEEEEEccccccceEEEEcCCC-CcEEEEEEEcCCceEeccCCceeEccCCCe
Confidence            987 4444 3322   2577888876 333322221 22222    34578999943

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.00  E-value=3.3e-07  Score=74.00  Aligned_cols=194  Identities=14%  Similarity=0.109  Sum_probs=120.5

Q ss_pred             ceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeee-ccC----CceEEEEeecCCCCcEEEEec
Q 019059           67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD-AHV----GKINCVLWWSSGRHDKLVSID  141 (346)
Q Consensus        67 ~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~-~~~----~~i~~~~~~~~~~~~~~~~~~  141 (346)
                      .-..++|.+++..++++.    ....+...+.+.          .....+. ...    ...+.+++.++|. ++++...
T Consensus        72 ~P~Gl~~~~dg~~l~vad----~~~~i~~~~~~g----------~~~~~~~~~~~g~~~~~pndl~~d~~G~-lyvtd~~  136 (314)
T d1pjxa_          72 IPAGCQCDRDANQLFVAD----MRLGLLVVQTDG----------TFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPA  136 (314)
T ss_dssp             CEEEEEECSSSSEEEEEE----TTTEEEEEETTS----------CEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECB
T ss_pred             cceeEEEeCCCCEEEEEE----CCCeEEEEeCCC----------cEEEEEeccccccccCCCcEEEECCCCC-EEEecCc
Confidence            456899999998777752    334567777651          1111111 111    1357789999997 3444311


Q ss_pred             ---------------CCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCC----cEEEE-ecCCeEEEEEccCCC
Q 019059          142 ---------------EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDV----NAVAA-TCESSVQFWDLRSMG  201 (346)
Q Consensus       142 ---------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~l~~~-~~d~~i~i~d~~~~~  201 (346)
                                     .+.|..++.+  .........     ....+.++|+|++.    .|+++ +..+.|..||+....
T Consensus       137 ~~~~~~~~~~~~~~~~G~v~~~~~d--g~~~~~~~~-----~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g  209 (314)
T d1pjxa_         137 GEVAPADYTRSMQEKFGSIYCFTTD--GQMIQVDTA-----FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPA  209 (314)
T ss_dssp             CBCTTSCCCBTTSSSCEEEEEECTT--SCEEEEEEE-----ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETT
T ss_pred             cCcccccccceeccCCceEEEEeec--CceeEeeCC-----cceeeeeEECCCCCcceeEEEEEeecccceEEeeccCcc
Confidence                           1234444332  222222211     11346889988764    35444 457889999887543


Q ss_pred             ccc------eeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEec
Q 019059          202 KTN------SIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG  272 (346)
Q Consensus       202 ~~~------~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~  272 (346)
                      .+.      .+....   ...+++.++|+ ++++....+.|.+||.+. ...+..+.......++++|.|++..++++.+
T Consensus       210 ~~~~~~~~~~~~~~~~~~pdGiavD~~Gn-lyVa~~~~g~I~~~dp~~-g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~  287 (314)
T d1pjxa_         210 KIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWGSSHIEVFGPDG-GQPKMRIRCPFEKPSNLHFKPQTKTIFVTEH  287 (314)
T ss_dssp             EEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEETTTEEEEECTTC-BSCSEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred             ccceeeEEEEccccccccceeeEEecCCc-EEEEEcCCCEEEEEeCCC-CEEEEEEECCCCCEEEEEEeCCCCEEEEEEC
Confidence            221      111111   66899999998 777777778999999875 4455566655677899999999844667778


Q ss_pred             CCCeEEEEecCC
Q 019059          273 TDSTVNLWLVST  284 (346)
Q Consensus       273 ~d~~i~iwd~~~  284 (346)
                      .++.|...++..
T Consensus       288 ~~g~i~~~~~~~  299 (314)
T d1pjxa_         288 ENNAVWKFEWQR  299 (314)
T ss_dssp             TTTEEEEEECSS
T ss_pred             CCCcEEEEECCC
Confidence            889998888876

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.97  E-value=4e-07  Score=73.75  Aligned_cols=205  Identities=9%  Similarity=0.015  Sum_probs=123.4

Q ss_pred             CceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec----CCeEEEEE
Q 019059          121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC----ESSVQFWD  196 (346)
Q Consensus       121 ~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~i~d  196 (346)
                      .....++|.++|+ ++++-...+.|..|+.++.... .....    .......++++++|+.+++...    .+.+...+
T Consensus        40 ~~lEG~~~D~~G~-Ly~~D~~~g~I~ri~p~g~~~~-~~~~~----~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~  113 (319)
T d2dg1a1          40 LQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIK-RPFVS----HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAAT  113 (319)
T ss_dssp             CCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEE-EEEEC----SSSSEEEEEECTTSCEEEEECTTSSSCCEEEEEC
T ss_pred             cCcEeCEECCCCC-EEEEECCCCEEEEEECCCCeEE-EEEeC----CCCCeeEEEECCCCCEEEEecCCCccceeEEEEc
Confidence            3456899999997 5666566889999988754322 22211    1225688999999987666543    23455556


Q ss_pred             ccCCCccceeecc---c-eeEEEeCCCCCcEEEEecC------CCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCc
Q 019059          197 LRSMGKTNSIEHA---H-VRNVDYDTKKKHLLVTAAD------ESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG  266 (346)
Q Consensus       197 ~~~~~~~~~~~~~---~-v~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~  266 (346)
                      .............   . ++.+++.++|. ++++...      .+.+..++..  ...+..+...-...+.++|+|++..
T Consensus       114 ~~~~~~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~d--g~~~~~~~~~~~~pnGia~s~dg~~  190 (319)
T d2dg1a1         114 ENGDNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPD--FRTVTPIIQNISVANGIALSTDEKV  190 (319)
T ss_dssp             TTSCSCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTT--SCCEEEEEEEESSEEEEEECTTSSE
T ss_pred             CCCceeeeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEecc--cceeEEEeeccceeeeeeeccccce
Confidence            5555443333211   1 88999999998 6665432      1235445443  3234443333345678999999933


Q ss_pred             EEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeecC
Q 019059          267 FILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLEK  346 (346)
Q Consensus       267 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~~  346 (346)
                      +.++-+..+.|..|++........          ...........+. .....+++.++|. +.++....+.|.+++-++
T Consensus       191 lyvad~~~~~I~~~d~~~~g~~~~----------~~~~~~~~~~~~~-~~PdGl~vD~~G~-l~Va~~~~g~V~~~~p~G  258 (319)
T d2dg1a1         191 LWVTETTANRLHRIALEDDGVTIQ----------PFGATIPYYFTGH-EGPDSCCIDSDDN-LYVAMYGQGRVLVFNKRG  258 (319)
T ss_dssp             EEEEEGGGTEEEEEEECTTSSSEE----------EEEEEEEEECCSS-SEEEEEEEBTTCC-EEEEEETTTEEEEECTTS
T ss_pred             EEEecccCCceEEEEEcCCCceec----------cccceeeeccCCc-cceeeeeEcCCCC-EEEEEcCCCEEEEECCCC
Confidence            456667788999999875100000          0000111111112 2356899999997 888888889999998653

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.92  E-value=3.5e-07  Score=72.58  Aligned_cols=195  Identities=11%  Similarity=0.109  Sum_probs=126.1

Q ss_pred             eEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecc-cCCCceeeEEEEeCCCCCcEEEEe--cCCeEEEEEccC
Q 019059          123 INCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQ-SSGMLHYLSGGAWDPHDVNAVAAT--CESSVQFWDLRS  199 (346)
Q Consensus       123 i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~i~d~~~  199 (346)
                      ...++++++++ ++++-...+.|++||.+ ++......... ..+.......+++.++....+...  .++.|..++.. 
T Consensus        25 P~gvavd~dg~-i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-  101 (279)
T d1q7fa_          25 PSGVAVNAQND-IIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-  101 (279)
T ss_dssp             EEEEEECTTCC-EEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-
T ss_pred             ccEEEEcCCCC-EEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc-
Confidence            57899999988 45555667899999975 32222221111 111122344556555544444333  35677777754 


Q ss_pred             CCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeee--cCCCcceEEEEeCCCCCcEEEEecCC
Q 019059          200 MGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL--PGHTHWTWAVCCNPEYDGFILSAGTD  274 (346)
Q Consensus       200 ~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~v~~v~~~~~~~~~l~s~~~d  274 (346)
                      ++....+....   ...++..+++. ++++....+.+.+++..  ...+..+  ..+......+++.+++ .++++....
T Consensus       102 g~~~~~~~~~~~~~p~~~avd~~G~-i~v~~~~~~~~~~~~~~--g~~~~~~g~~~~~~~~~~i~~d~~g-~i~v~d~~~  177 (279)
T d1q7fa_         102 GQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN--GNVLHKFGCSKHLEFPNGVVVNDKQ-EIFISDNRA  177 (279)
T ss_dssp             SCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT--SCEEEEEECTTTCSSEEEEEECSSS-EEEEEEGGG
T ss_pred             ccceeecCCCcccccceeccccCCc-EEEEeeccceeeEeccC--Cceeecccccccccccceeeeccce-eEEeeeccc
Confidence            55555554333   78999999998 77777777788888765  3345554  3355677889999999 888888888


Q ss_pred             CeEEEEecCCCCCCCCCcccccCCccccccccccccc--cccceeeEEEeCCCCCcEEEEee-cCCeEEEeeec
Q 019059          275 STVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYS--DYEDSVYGLAWSSREPWIFASLS-YDGRVRNHMLE  345 (346)
Q Consensus       275 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~-~d~~v~vw~~~  345 (346)
                      +.|++||...                    +.+.++.  +......+|+++|+|. ++++-. .++.|.+|+.+
T Consensus       178 ~~V~~~d~~G--------------------~~~~~~g~~g~~~~P~giavD~~G~-i~Vad~~~~~~v~~f~~~  230 (279)
T d1q7fa_         178 HCVKVFNYEG--------------------QYLRQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQD  230 (279)
T ss_dssp             TEEEEEETTC--------------------CEEEEESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECTT
T ss_pred             cceeeeecCC--------------------ceeeeecccccccCCcccccccCCe-EEEEECCCCcEEEEECCC
Confidence            9999999764                    4444442  2334578899999997 666644 34578888754

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.80  E-value=3.4e-07  Score=72.44  Aligned_cols=232  Identities=9%  Similarity=0.084  Sum_probs=119.2

Q ss_pred             eeecCC--CCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecC-----C
Q 019059           71 LSSCPF--DQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDE-----E  143 (346)
Q Consensus        71 ~~~~~~--~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d-----~  143 (346)
                      +..+|+  |+.++.+     .++.|.+.|++         .++ .+.+..+.+.+...+|||||++++++...+     .
T Consensus         4 ~~~sPdi~G~~v~f~-----~~~dl~~~d~~---------~g~-~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~   68 (281)
T d1k32a2           4 LLLNPDIHGDRIIFV-----CCDDLWEHDLK---------SGS-TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTA   68 (281)
T ss_dssp             CCEEEEEETTEEEEE-----ETTEEEEEETT---------TCC-EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEE
T ss_pred             cccCCCCCCCEEEEE-----eCCcEEEEECC---------CCC-EEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCce
Confidence            345788  9988876     33457777776         333 345667778889999999999866665332     2


Q ss_pred             eEEEEEcCCCCCCceeeec-ccCCCceeeEEEEeCCCCCcEEEEec------CCeEEEEEccCCCccceeeccceeEEEe
Q 019059          144 NIFLWSLDCSNKNAQVQSK-QSSGMLHYLSGGAWDPHDVNAVAATC------ESSVQFWDLRSMGKTNSIEHAHVRNVDY  216 (346)
Q Consensus       144 ~i~vwd~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~v~~~~~  216 (346)
                      .|.+++..+++........ .............|+|+++.++....      ...+...+...+....... .....+.+
T Consensus        69 ~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  147 (281)
T d1k32a2          69 DLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNL-GPATHILF  147 (281)
T ss_dssp             EEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCS-CSCSEEEE
T ss_pred             EEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecC-Cccceeee
Confidence            4667776655322111110 01112234567789999998887643      1234555555443221111 11222223


Q ss_pred             CCCCCcEEEEecCCC-----------eEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCC--CeEEEEecC
Q 019059          217 DTKKKHLLVTAADES-----------GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTD--STVNLWLVS  283 (346)
Q Consensus       217 ~~~~~~~l~~~~~dg-----------~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d--~~i~iwd~~  283 (346)
                       +++...++....+.           ......... . ................++++.  .+.....+  ..|.++|+.
T Consensus       148 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~d~~  222 (281)
T d1k32a2         148 -ADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNS-G-AFKKIVDMSTHVSSPVIVGHR--IYFITDIDGFGQIYSTDLD  222 (281)
T ss_dssp             -ETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEET-T-EEEEEECCSSCCEEEEEETTE--EEEEECTTSSCEEEEEETT
T ss_pred             -cCCCeEEEeeccccceeeeeccCCcceeeeeccc-c-ceeeccCCccccceeeeeccc--cceecccccccceEEEeCC
Confidence             33332333322211           111222221 1 122222333444555566654  33333333  357777777


Q ss_pred             CCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeecC
Q 019059          284 TSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLEK  346 (346)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~~  346 (346)
                      .                    .....+..+.. .....|+|+|+.++.  ..++.|+++|+++
T Consensus       223 g--------------------~~~~~lt~~~~-~~~~~~SpDG~~I~f--~~~~~l~~~d~~~  262 (281)
T d1k32a2         223 G--------------------KDLRKHTSFTD-YYPRHLNTDGRRILF--SKGGSIYIFNPDT  262 (281)
T ss_dssp             S--------------------CSCEECCCCCS-SCEEEEEESSSCEEE--EETTEEEEECTTT
T ss_pred             C--------------------CceEEeecCCC-cccccCcCCCCEEEE--EeCCEEEEEECCC
Confidence            5                    22233332222 223468999985444  3467899988763

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.58  E-value=3e-06  Score=66.80  Aligned_cols=226  Identities=12%  Similarity=0.018  Sum_probs=110.9

Q ss_pred             CCCC--cceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcce--EEEEecC
Q 019059           24 ADTD--HTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYG--AAIWQIP   99 (346)
Q Consensus        24 ~~~~--~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~--i~vw~~~   99 (346)
                      .+|+  +.+++..     .++.|++.++...+.    +.+..+.+.+...+|||||+.|+.+...++.+..  |.+.+..
T Consensus         6 ~sPdi~G~~v~f~-----~~~dl~~~d~~~g~~----~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~   76 (281)
T d1k32a2           6 LNPDIHGDRIIFV-----CCDDLWEHDLKSGST----RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGE   76 (281)
T ss_dssp             EEEEEETTEEEEE-----ETTEEEEEETTTCCE----EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETT
T ss_pred             cCCCCCCCEEEEE-----eCCcEEEEECCCCCE----EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEec
Confidence            3455  6666653     245677777776432    3455677889999999999999987655555544  4444544


Q ss_pred             cccCCCCCccceeeeeeec-------cCCceEEEEeecCCCCcEEEEec-----CCeEEEEEcCCCCCCceeeecccCCC
Q 019059          100 ELYGQLNSPQLERIAALDA-------HVGKINCVLWWSSGRHDKLVSID-----EENIFLWSLDCSNKNAQVQSKQSSGM  167 (346)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~-----d~~i~vwd~~~~~~~~~~~~~~~~~~  167 (346)
                               .++.. .+..       .........|+|+|+.++++...     ...+...+.....    ..... .+ 
T Consensus        77 ---------~g~~~-~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~-  140 (281)
T d1k32a2          77 ---------NGEIK-RITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGIN----FVPLN-LG-  140 (281)
T ss_dssp             ---------TTEEE-ECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTE----EEECC-SC-
T ss_pred             ---------CCceE-EeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCce----eEEec-CC-
Confidence                     22221 2211       12345678899999964433321     1224444444221    11110 00 


Q ss_pred             ceeeEEEEeCCCCCcEEEEec-C-----------CeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCC--Ce
Q 019059          168 LHYLSGGAWDPHDVNAVAATC-E-----------SSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADE--SG  232 (346)
Q Consensus       168 ~~~v~~~~~~~~~~~l~~~~~-d-----------~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~d--g~  232 (346)
                        .... .+.+++..++.... .           ..................... .....+.++.  ++.....+  ..
T Consensus       141 --~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  215 (281)
T d1k32a2         141 --PATH-ILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHR--IYFITDIDGFGQ  215 (281)
T ss_dssp             --SCSE-EEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTE--EEEEECTTSSCE
T ss_pred             --ccce-eeecCCCeEEEeeccccceeeeeccCCcceeeeeccccceeeccCCccccceeeeeccc--cceecccccccc
Confidence              1112 22233333332221 1           111112222111111111111 4445555543  34444433  35


Q ss_pred             EEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          233 IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       233 i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      |.++|+.. + ..+.+..+. ......|+|+| ..|+- ..++.|+++|+.+
T Consensus       216 l~~~d~~g-~-~~~~lt~~~-~~~~~~~SpDG-~~I~f-~~~~~l~~~d~~~  262 (281)
T d1k32a2         216 IYSTDLDG-K-DLRKHTSFT-DYYPRHLNTDG-RRILF-SKGGSIYIFNPDT  262 (281)
T ss_dssp             EEEEETTS-C-SCEECCCCC-SSCEEEEEESS-SCEEE-EETTEEEEECTTT
T ss_pred             eEEEeCCC-C-ceEEeecCC-CcccccCcCCC-CEEEE-EeCCEEEEEECCC
Confidence            77777764 2 344444322 22334689999 55544 2357899999987

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.57  E-value=6.8e-05  Score=57.87  Aligned_cols=272  Identities=11%  Similarity=0.141  Sum_probs=165.8

Q ss_pred             CCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCC
Q 019059           26 TDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQL  105 (346)
Q Consensus        26 ~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~  105 (346)
                      -++.++++-.-..+..+++.++++...+.....      +-.--+.-.+|..+.|+.-     ...+++++|++      
T Consensus        29 ~ESDkyicVRe~~~~~~~VvIidl~n~~~~~Rr------pi~AdsAIMhP~~~IiALr-----ag~~LQiFnle------   91 (327)
T d1utca2          29 MESDKFICIREKVGEQAQVVIIDMNDPSNPIRR------PISADSAIMNPASKVIALK-----AGKTLQIFNIE------   91 (327)
T ss_dssp             CSSSSEEEEEEEETTEEEEEEEETTSTTSCEEE------ECCCSEEEECSSSSEEEEE-----ETTEEEEEETT------
T ss_pred             EecCCEEEEEeccCCCceEEEEECCCCCcceec------ccchhhhhcCCCCcEEEEe-----cCCeEEEEehh------
Confidence            355667766555566778899998876543321      1122234567866555443     24589999998      


Q ss_pred             CCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEE
Q 019059          106 NSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVA  185 (346)
Q Consensus       106 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  185 (346)
                         ..+.++.+. ..+.|.--.|-.+.. +.+++  +..|+-|+++....+.+.......-....|-.-..+++.++++.
T Consensus        92 ---tK~klks~~-~~e~VvfWkWis~~~-L~lVT--~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l  164 (327)
T d1utca2          92 ---MKSKMKAHT-MTDDVTFWKWISLNT-VALVT--DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLL  164 (327)
T ss_dssp             ---TTEEEEEEE-CSSCCCEEEESSSSE-EEEEC--SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEE
T ss_pred             ---HhhhhceEE-cCCCcEEEEecCCCE-EEEEc--CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEE
Confidence               556666653 355788888987765 34443  68999999976555555554443323457777788999998776


Q ss_pred             Ee---c----CCeEEEEEccCCCccceeeccc-eeEEEeCCCC----CcEEEEe---cCCCeEEEEEcccCCc---c---
Q 019059          186 AT---C----ESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKK----KHLLVTA---ADESGIHLWDLRMLKA---P---  244 (346)
Q Consensus       186 ~~---~----d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~----~~~l~~~---~~dg~i~i~d~~~~~~---~---  244 (346)
                      .+   .    .|.+.+|..+.+.  ...-.+| ..-..+.-+|    ..+++.+   ...+.+++.++.....   +   
T Consensus       165 ~GI~~~~~~i~G~mQLYS~er~~--sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~k  242 (327)
T d1utca2         165 TGISAQQNRVVGAMQLYSVDRKV--SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPK  242 (327)
T ss_dssp             EEEEEETTEEEEEEEEEETTTTE--EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCC
T ss_pred             EeEecCCCceeEEEEEEEeccCc--CccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcc
Confidence            55   2    3678888877432  2233366 2222222121    1233332   2336889998875321   1   


Q ss_pred             --eeeecC---CCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeE
Q 019059          245 --IQELPG---HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYG  319 (346)
Q Consensus       245 --~~~~~~---~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  319 (346)
                        +..+..   ...-..++..++.. ..++..+.-|.|++||+.+                   +.++..-.-....|..
T Consensus       243 k~vdi~fppea~~DFPvamqvs~ky-giiyviTK~G~i~lyDleT-------------------gt~i~~nRIs~~~iF~  302 (327)
T d1utca2         243 KAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLET-------------------GTCIYMNRISGETIFV  302 (327)
T ss_dssp             EEEECCCCTTCTTCCEEEEEEETTT-TEEEEEETTSEEEEEETTT-------------------CCEEEEEECCSSCEEE
T ss_pred             eeEEEECCccccCCcEEEEEeeccC-CEEEEEecCcEEEEEEccc-------------------ccEEEEeecCCCceEE
Confidence              111111   12334567777777 7888899999999999999                   8888777666666664


Q ss_pred             EEeCCCCCcEEEEeecCCeEEEeee
Q 019059          320 LAWSSREPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       320 ~~~~~~~~~~l~s~~~d~~v~vw~~  344 (346)
                      -+-+.+... +++...+|.|.--.+
T Consensus       303 ~a~~~~~~G-i~~VNr~GqVl~vsv  326 (327)
T d1utca2         303 TAPHEATAG-IIGVNRKGQVLSVCV  326 (327)
T ss_dssp             EEEETTTTE-EEEEETTSEEEEEEE
T ss_pred             eccCCCCce-EEEECCCCeEEEEEe
Confidence            444444332 445557787765433

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.54  E-value=2.8e-05  Score=61.73  Aligned_cols=198  Identities=9%  Similarity=0.001  Sum_probs=120.4

Q ss_pred             EEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccc
Q 019059          125 CVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN  204 (346)
Q Consensus       125 ~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  204 (346)
                      +..|.+....++.+--..+.|..||..+++.. ....      ...+.++++.+++..+++ +.+ .|.++|..+++...
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~~------~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~   92 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHAL------PFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTL   92 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEEC------SSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEE
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEEC------CCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeE
Confidence            45688766655555556789999998865421 1111      125778888888765554 444 58899999887543


Q ss_pred             eeec-----cc-eeEEEeCCCCCcEEEEecC----CCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCC
Q 019059          205 SIEH-----AH-VRNVDYDTKKKHLLVTAAD----ESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTD  274 (346)
Q Consensus       205 ~~~~-----~~-v~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d  274 (346)
                      ....     .. ++.+.+.|+|. +.++...    .+.-.+|.+.. +. +..+...-...+.+.|++++..++++-+..
T Consensus        93 l~~~~~~~~~~~~nd~~vd~~G~-iw~~~~~~~~~~~~g~l~~~~~-g~-~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~  169 (295)
T d2ghsa1          93 HAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVAK-GK-VTKLFADISIPNSICFSPDGTTGYFVDTKV  169 (295)
T ss_dssp             EECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEET-TE-EEEEEEEESSEEEEEECTTSCEEEEEETTT
T ss_pred             EeeeecCCCcccceeeEECCCCC-EEEEeccccccccceeEeeecC-Cc-EEEEeeccCCcceeeecCCCceEEEeeccc
Confidence            2221     11 89999999998 5554322    23445666654 32 222222234567899999994466677778


Q ss_pred             CeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeecC
Q 019059          275 STVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLEK  346 (346)
Q Consensus       275 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~~  346 (346)
                      +.|..|++.........           .........+.......+++.++|. +.++.-..+.|..|+.++
T Consensus       170 ~~I~~~~~d~~~~~~~~-----------~~~~~~~~~~~~g~pdG~~vD~~Gn-lWva~~~~g~V~~~dp~G  229 (295)
T d2ghsa1         170 NRLMRVPLDARTGLPTG-----------KAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDTDG  229 (295)
T ss_dssp             CEEEEEEBCTTTCCBSS-----------CCEEEEECTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECTTC
T ss_pred             ceeeEeeeccccccccc-----------ceEEEeccCcccccccceEEcCCCC-EEeeeeCCCceEEecCCC
Confidence            89999987641100000           0111122223344578888999887 666666677888887543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.34  E-value=2.7e-05  Score=63.42  Aligned_cols=191  Identities=16%  Similarity=0.041  Sum_probs=121.0

Q ss_pred             CCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeee-ccCCceEEEEeecCCCCcEEEE-ecC----------
Q 019059           75 PFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD-AHVGKINCVLWWSSGRHDKLVS-IDE----------  142 (346)
Q Consensus        75 ~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~-~~d----------  142 (346)
                      +||+++++.   ...+..|.+-|++         ..+..+.+. .....+..++..++.+...+++ +.+          
T Consensus        97 yDGrylFVN---Dkan~RVAvIdl~---------~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~  164 (459)
T d1fwxa2          97 YDGRFLFMN---DKANTRVARVRCD---------VMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTN  164 (459)
T ss_dssp             EEEEEEEEE---ETTTTEEEEEETT---------TTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSS
T ss_pred             cceeEEEEE---cCCCceEEEEECc---------ceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCcc
Confidence            378888886   4677889999998         555544332 2344567667665544444444 321          


Q ss_pred             --------CeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecC-------------------------
Q 019059          143 --------ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE-------------------------  189 (346)
Q Consensus       143 --------~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------------------------  189 (346)
                              +.+.+.|.++.+...++....      ....+.++++|+++++.+.+                         
T Consensus       165 l~d~~~y~~~~t~ID~~tm~V~~QV~V~g------~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~r  238 (459)
T d1fwxa2         165 MEDVANYVNVFTAVDADKWEVAWQVLVSG------NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAE  238 (459)
T ss_dssp             TTCGG-EEEEEEEEETTTTEEEEEEEESS------CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHH
T ss_pred             ccchhhcceEEEEEecCCceEEEEeeeCC------ChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHH
Confidence                    235567777554443433322      46678999999999988743                         


Q ss_pred             -------------CeEEEEEccCC---Cccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcc-------e
Q 019059          190 -------------SSVQFWDLRSM---GKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAP-------I  245 (346)
Q Consensus       190 -------------~~i~i~d~~~~---~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------~  245 (346)
                                   +.+.+.|.+..   .....+..+. ...+..+|||+++++++..+.++.++|+++....       .
T Consensus       239 ie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~  318 (459)
T d1fwxa2         239 IEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPR  318 (459)
T ss_dssp             HHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GG
T ss_pred             hHHhhhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCcc
Confidence                         12345555432   1222343334 8889999999988888889999999999753211       1


Q ss_pred             eee---cCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          246 QEL---PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       246 ~~~---~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      ..+   ....-.....+|...| ....|.--|.+|.-|++..
T Consensus       319 ~~~~~e~elglgPLht~fd~~g-~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         319 SAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             GGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHH
T ss_pred             ccEEeecccCcCccccccCCCc-eEEEEeeccceEEEEecch
Confidence            111   1122344567888888 6666777899999999864

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.32  E-value=0.00033  Score=54.23  Aligned_cols=224  Identities=9%  Similarity=-0.051  Sum_probs=130.1

Q ss_pred             CcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCc
Q 019059           89 ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGML  168 (346)
Q Consensus        89 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  168 (346)
                      ..+.|+-.+++...    .........+..+...+.+++|.+..+.++.+-..++.|+..+++.... ..+....    .
T Consensus         8 ~~~~I~~~~ld~~~----~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~-~~v~~~~----~   78 (263)
T d1npea_           8 QTGKIERLPLERNT----MKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTIIRQD----L   78 (263)
T ss_dssp             EEEEEEEEEESSSC----BCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEEECTT----C
T ss_pred             CCCeEEEEECCCcc----ccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCc-EEEEEec----c
Confidence            44567767765211    0111222233344556888999988886565556678899999875442 2222221    2


Q ss_pred             eeeEEEEeCCCCCcEEEEe-cCCeEEEEEccCCCccceeecc-c-eeEEEeCCCCCcEEEEecCCC--eEEEEEcccCCc
Q 019059          169 HYLSGGAWDPHDVNAVAAT-CESSVQFWDLRSMGKTNSIEHA-H-VRNVDYDTKKKHLLVTAADES--GIHLWDLRMLKA  243 (346)
Q Consensus       169 ~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~-~-v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~  243 (346)
                      ..+.++++..-+..|+.+. ..+.|.+.++........+... . +..++++|....++.+-...+  .|...++.... 
T Consensus        79 ~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~-  157 (263)
T d1npea_          79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-  157 (263)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-
T ss_pred             ccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCC-
Confidence            2578888877677777665 4679999998866543323222 2 899999998885555533323  34444554322 


Q ss_pred             ceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeC
Q 019059          244 PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWS  323 (346)
Q Consensus       244 ~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  323 (346)
                      ........-.....+++.+.+..+..+-...+.|...|+..                   ......+.+-.. ..+|++.
T Consensus       158 ~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g-------------------~~~~~v~~~~~~-P~~lav~  217 (263)
T d1npea_         158 RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ-------------------PGRRKVLEGLQY-PFAVTSY  217 (263)
T ss_dssp             CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE-------------------EEEEEEEECCCS-EEEEEEE
T ss_pred             ceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCC-------------------CCeEEEECCCCC-cEEEEEE
Confidence            22222223356688999888734445545678898888875                   222222223222 3567775


Q ss_pred             CCCCcEEEEeecCCeEEEeee
Q 019059          324 SREPWIFASLSYDGRVRNHML  344 (346)
Q Consensus       324 ~~~~~~l~s~~~d~~v~vw~~  344 (346)
                        +.+++.+-...+.|...+.
T Consensus       218 --~~~lYwtd~~~~~I~~~~~  236 (263)
T d1npea_         218 --GKNLYYTDWKTNSVIAMDL  236 (263)
T ss_dssp             --TTEEEEEETTTTEEEEEET
T ss_pred             --CCEEEEEECCCCEEEEEEC
Confidence              3346666556666666554

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.08  E-value=0.0012  Score=51.01  Aligned_cols=222  Identities=12%  Similarity=0.032  Sum_probs=131.7

Q ss_pred             CeEEEEEecCCCCe--EEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeecc
Q 019059           42 NEVHLLRLSSGGTE--LICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH  119 (346)
Q Consensus        42 ~~i~~~~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~  119 (346)
                      +.|..+.++.....  .....+..+...+.+++|.+.++.+.-+   ....+.|...+++         .......+...
T Consensus        10 ~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iyws---d~~~~~I~~~~l~---------g~~~~~v~~~~   77 (263)
T d1npea_          10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWT---DISEPSIGRASLH---------GGEPTTIIRQD   77 (263)
T ss_dssp             EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEE---ETTTTEEEEEESS---------SCCCEEEECTT
T ss_pred             CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEE---ECCCCeEEEEEcc---------cCCcEEEEEec
Confidence            45555665443211  1112233344567889999888888765   3566788888876         22222223233


Q ss_pred             CCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecC---CeEEEEE
Q 019059          120 VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE---SSVQFWD  196 (346)
Q Consensus       120 ~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~i~d  196 (346)
                      ...+.++++..-+..++.+-...+.|.+.+++.... ..+.. .   .......++++|....++.....   ..|..-+
T Consensus        78 ~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~-~~l~~-~---~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~  152 (263)
T d1npea_          78 LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RVLFD-T---GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSH  152 (263)
T ss_dssp             CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEC-S---SCSSEEEEEEETTTTEEEEEECCSSSCEEEEEE
T ss_pred             cccccEEEEeccCCeEEEeccCCCEEEEEecCCceE-EEEec-c---cccCCcEEEEecccCcEEEeecCCCCcEEEEec
Confidence            356788888876665555556678999999875432 22222 1   12357889999988877766432   2355556


Q ss_pred             ccCCCccceeeccc--eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCC
Q 019059          197 LRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTD  274 (346)
Q Consensus       197 ~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d  274 (346)
                      +............-  +..+++++.++.++.+-...+.|...|+.. ......+.+.. ...+|++. .+ .+..+-...
T Consensus       153 ~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g-~~~~~v~~~~~-~P~~lav~-~~-~lYwtd~~~  228 (263)
T d1npea_         153 MDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ-PGRRKVLEGLQ-YPFAVTSY-GK-NLYYTDWKT  228 (263)
T ss_dssp             TTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE-EEEEEEEECCC-SEEEEEEE-TT-EEEEEETTT
T ss_pred             CCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCC-CCeEEEECCCC-CcEEEEEE-CC-EEEEEECCC
Confidence            65443322222221  789999988774556656778999999874 22222233322 23567765 33 555555567


Q ss_pred             CeEEEEecCC
Q 019059          275 STVNLWLVST  284 (346)
Q Consensus       275 ~~i~iwd~~~  284 (346)
                      +.|...|..+
T Consensus       229 ~~I~~~~~~~  238 (263)
T d1npea_         229 NSVIAMDLAI  238 (263)
T ss_dssp             TEEEEEETTT
T ss_pred             CEEEEEECCC
Confidence            7888888876

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.06  E-value=0.00027  Score=57.54  Aligned_cols=207  Identities=13%  Similarity=0.075  Sum_probs=117.1

Q ss_pred             EEEee---cCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeC--CCCCcEEEEecC----------
Q 019059          125 CVLWW---SSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWD--PHDVNAVAATCE----------  189 (346)
Q Consensus       125 ~~~~~---~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d----------  189 (346)
                      .+++.   +||+++++.-..+.+|.+-|+++-+....+....    ...+..+...  |+..+++..+..          
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn----~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~  164 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPN----AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTN  164 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSS----CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSS
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCC----CCCCceeecccCCCeEEEEccCccccccCCCCcc
Confidence            45554   4899866666678999999998755332222211    1145555554  445566665542          


Q ss_pred             --------CeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCC--------------eEEEE----------
Q 019059          190 --------SSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADES--------------GIHLW----------  236 (346)
Q Consensus       190 --------~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg--------------~i~i~----------  236 (346)
                              +.+.++|..+.+...++..+. ...++++++|++.++++....              .+.++          
T Consensus       165 l~d~~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~  244 (459)
T d1fwxa2         165 MEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIA  244 (459)
T ss_dssp             TTCGG-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHH
T ss_pred             ccchhhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhh
Confidence                    236678888887766665444 889999999995555542211              23333          


Q ss_pred             -------------EcccC-C-cceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccc
Q 019059          237 -------------DLRML-K-APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQ  301 (346)
Q Consensus       237 -------------d~~~~-~-~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  301 (346)
                                   |.+.. + ..+..+. -......+.++|||...++++..+.++.|+|++......     ...  ..
T Consensus       245 ~Gk~~eingV~VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~-----~~~--~~  316 (459)
T d1fwxa2         245 AGDYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVF-----YEN--AD  316 (459)
T ss_dssp             HTCSEEETTEEEEECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHH-----HSC--C-
T ss_pred             cCCcEEeCCceeecccccCCcceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhh-----ccc--CC
Confidence                         33321 0 1111111 123346788999994445566678999999998521000     000  00


Q ss_pred             cccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059          302 RANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE  345 (346)
Q Consensus       302 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~  345 (346)
                      ......... ...-....-+|+..|. ...|.--|.+|.-|+++
T Consensus       317 ~~~~~~~e~-elglgPLht~fd~~g~-aytslfids~v~kw~~~  358 (459)
T d1fwxa2         317 PRSAVVAEP-ELGLGPLHTAFDGRGN-AYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             GGGGEEECC-BCCSCEEEEEECTTSE-EEEEETTTTEEEEEEHH
T ss_pred             ccccEEeec-ccCcCccccccCCCce-EEEEeeccceEEEEecc
Confidence            001111111 1122345678888874 66677789999999974

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=0.0013  Score=50.85  Aligned_cols=181  Identities=11%  Similarity=0.010  Sum_probs=108.9

Q ss_pred             CcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCC--ceeeecccCC
Q 019059           89 ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKN--AQVQSKQSSG  166 (346)
Q Consensus        89 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~--~~~~~~~~~~  166 (346)
                      ....|+..+++.         .+. ..+......+.+++|.+..+.++.+-...+.|...+++.....  .......   
T Consensus         8 ~~~~I~~~~l~~---------~~~-~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~---   74 (266)
T d1ijqa1           8 NRHEVRKMTLDR---------SEY-TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR---   74 (266)
T ss_dssp             CBSSEEEEETTS---------CCC-EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS---
T ss_pred             CCCeEEEEECCC---------Ccc-eeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeC---
Confidence            334588788872         111 2222344567899999888865555455777877777542211  1111111   


Q ss_pred             CceeeEEEEeCCCCCcEEEEe-cCCeEEEEEccCCCccceeecc-c-eeEEEeCCCCCcEEEEec-CCCeEEEEEcccCC
Q 019059          167 MLHYLSGGAWDPHDVNAVAAT-CESSVQFWDLRSMGKTNSIEHA-H-VRNVDYDTKKKHLLVTAA-DESGIHLWDLRMLK  242 (346)
Q Consensus       167 ~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~-~-v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~  242 (346)
                      ....+.++++.+.+..|+.+. ..+.|.+.++............ . +..++.+|....++.+.. ..+.|...++.-  
T Consensus        75 ~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dG--  152 (266)
T d1ijqa1          75 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG--  152 (266)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS--
T ss_pred             CCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCC--
Confidence            122566788887777777765 4678999999866544434322 2 899999997764555532 345676666653  


Q ss_pred             cceeeec-CCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059          243 APIQELP-GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       243 ~~~~~~~-~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      .....+. ..-...+.+++.+.+.++..+-...+.|...++..
T Consensus       153 s~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG  195 (266)
T d1ijqa1         153 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  195 (266)
T ss_dssp             CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCC
Confidence            2333333 33356789999988734455556678898888865

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=0.002  Score=49.82  Aligned_cols=223  Identities=8%  Similarity=-0.060  Sum_probs=130.5

Q ss_pred             CeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCC
Q 019059           42 NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVG  121 (346)
Q Consensus        42 ~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~  121 (346)
                      +.|+.++++..+...    +......+.+++|.+..+.+.-+   ....+.|..-+++....     .......+.....
T Consensus        10 ~~I~~~~l~~~~~~~----~~~~~~~~~~id~d~~~~~lYw~---D~~~~~I~~~~l~~~~~-----~~~~~~~~~~~~~   77 (266)
T d1ijqa1          10 HEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNRIYWS---DLSQRMICSTQLDRAHG-----VSSYDTVISRDIQ   77 (266)
T ss_dssp             SSEEEEETTSCCCEE----EECSCSSEEEEEEETTTTEEEEE---ETTTTEEEEEEC-------------CEEEECSSCS
T ss_pred             CeEEEEECCCCccee----eeCCCCceEEEEEEeCCCEEEEE---ECCCCEEEEEEecCCCC-----CcceEEEEeCCCC
Confidence            446666665433222    22345567889999888877765   34556676666641100     1111112222234


Q ss_pred             ceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEe--cCCeEEEEEccC
Q 019059          122 KINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT--CESSVQFWDLRS  199 (346)
Q Consensus       122 ~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~i~d~~~  199 (346)
                      .+..+++.+.+..++.+-...+.|.+.+++.... ......    .......++.+|...+++.+.  ..+.|...++..
T Consensus        78 ~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~-~~~~~~----~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dG  152 (266)
T d1ijqa1          78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFRE----NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG  152 (266)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE-EEEEEC----TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             CcceEEEeeccceEEEEecCCCEEEeEecCCceE-EEEEcC----CCCCcceEEEEcccCeEEEeccCCCcceeEeccCC
Confidence            5677888877776666656678999999875432 222221    123578899998777777664  345677777764


Q ss_pred             CCccceeecc-c-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecC--CCcceEEEEeCCCCCcEEEEecCCC
Q 019059          200 MGKTNSIEHA-H-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG--HTHWTWAVCCNPEYDGFILSAGTDS  275 (346)
Q Consensus       200 ~~~~~~~~~~-~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~v~~v~~~~~~~~~l~s~~~d~  275 (346)
                      .......... . +..+++++.+..++.+-...+.|...|+.... .......  .......+++.. + .+..+-..++
T Consensus       153 s~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~-~~~~~~~~~~~~~p~~lav~~-~-~ly~td~~~~  229 (266)
T d1ijqa1         153 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFE-D-KVFWTDIINE  229 (266)
T ss_dssp             CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEET-T-EEEEEETTTT
T ss_pred             CceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCC-EEEEEeCCCcccccEEEEEEC-C-EEEEEECCCC
Confidence            4333222211 1 88999998887566666777899999986422 2222222  223455677663 3 5555555677


Q ss_pred             eEEEEecCC
Q 019059          276 TVNLWLVST  284 (346)
Q Consensus       276 ~i~iwd~~~  284 (346)
                      .|...+..+
T Consensus       230 ~I~~~~~~~  238 (266)
T d1ijqa1         230 AIFSANRLT  238 (266)
T ss_dssp             EEEEEETTT
T ss_pred             eEEEEECCC
Confidence            887777666

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.47  E-value=0.013  Score=45.03  Aligned_cols=237  Identities=13%  Similarity=0.150  Sum_probs=133.0

Q ss_pred             CceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCc
Q 019059           78 QRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNA  157 (346)
Q Consensus        78 ~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~  157 (346)
                      ...+++....+....|.+-|+..        ...+.+.-...+    +.-.+|..+  +++--....+.++|+++.++..
T Consensus        32 DkyicVRe~~~~~~~VvIidl~n--------~~~~~Rrpi~Ad----sAIMhP~~~--IiALrag~~LQiFnletK~klk   97 (327)
T d1utca2          32 DKFICIREKVGEQAQVVIIDMND--------PSNPIRRPISAD----SAIMNPASK--VIALKAGKTLQIFNIEMKSKMK   97 (327)
T ss_dssp             SSEEEEEEEETTEEEEEEEETTS--------TTSCEEEECCCS----EEEECSSSS--EEEEEETTEEEEEETTTTEEEE
T ss_pred             CCEEEEEeccCCCceEEEEECCC--------CCcceecccchh----hhhcCCCCc--EEEEecCCeEEEEehhHhhhhc
Confidence            34455443334556788889872        112222211222    333567776  4444336799999999766544


Q ss_pred             eeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCC-ccceeeccc------eeEEEeCCCCCcEEEEec--
Q 019059          158 QVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG-KTNSIEHAH------VRNVDYDTKKKHLLVTAA--  228 (346)
Q Consensus       158 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~------v~~~~~~~~~~~~l~~~~--  228 (346)
                      .....+      +|.--.|-. .+.|+..+ +..|+-|++.... +.+.+....      |-.-..+++.++++++|-  
T Consensus        98 s~~~~e------~VvfWkWis-~~~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~  169 (327)
T d1utca2          98 AHTMTD------DVTFWKWIS-LNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISA  169 (327)
T ss_dssp             EEECSS------CCCEEEESS-SSEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEE
T ss_pred             eEEcCC------CcEEEEecC-CCEEEEEc-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEec
Confidence            444322      566667764 34455544 5679999996543 444443221      777788899986555542  


Q ss_pred             C----CCeEEEEEcccCCcceeeecCCCcceEEEEeCCCC--CcEEEEec---CCCeEEEEecCCCCCCCCCcccccCCc
Q 019059          229 D----ESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEY--DGFILSAG---TDSTVNLWLVSTSNHDELPSESLVESP  299 (346)
Q Consensus       229 ~----dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~--~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~  299 (346)
                      .    .|.+.+|..+.  ..-+.+++|......+.+..+.  ..+|+-+.   ..+.++|-++..........      +
T Consensus       170 ~~~~i~G~mQLYS~er--~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f------~  241 (327)
T d1utca2         170 QQNRVVGAMQLYSVDR--KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF------P  241 (327)
T ss_dssp             ETTEEEEEEEEEETTT--TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCC------C
T ss_pred             CCCceeEEEEEEEecc--CcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCC------c
Confidence            2    36788999874  3567788887776666554222  13444332   23578888887621110000      0


Q ss_pred             cccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeecC
Q 019059          300 NQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLEK  346 (346)
Q Consensus       300 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~~  346 (346)
                      . ..-.....-..-.+-..++..++.-. ++...+.-|.+++||++.
T Consensus       242 k-k~vdi~fppea~~DFPvamqvs~kyg-iiyviTK~G~i~lyDleT  286 (327)
T d1utca2         242 K-KAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLET  286 (327)
T ss_dssp             C-EEEECCCCTTCTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTT
T ss_pred             c-eeEEEECCccccCCcEEEEEeeccCC-EEEEEecCcEEEEEEccc
Confidence            0 00000000111123345677777665 777888889999999863

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.46  E-value=0.021  Score=47.25  Aligned_cols=205  Identities=9%  Similarity=0.101  Sum_probs=110.3

Q ss_pred             cceEEeeecCCCCceEEEEeecCCc-ceEEEEecCcccCCCCCccceeee-eeeccCCceEEEEeecCCCCcEEEEec--
Q 019059           66 NEIWDLSSCPFDQRIFSTVFSTGES-YGAAIWQIPELYGQLNSPQLERIA-ALDAHVGKINCVLWWSSGRHDKLVSID--  141 (346)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~d-~~i~vw~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~--  141 (346)
                      -.+...++||++++++.+...+|.| ..+++.|+.         +++.+. .+.  ......+.|.+|++.++.+.-.  
T Consensus       125 ~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~---------tg~~~~~~i~--~~~~~~~~W~~D~~~~~Y~~~~~~  193 (430)
T d1qfma1         125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD---------GAKELPDVLE--RVKFSCMAWTHDGKGMFYNAYPQQ  193 (430)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT---------TTEEEEEEEE--EECSCCEEECTTSSEEEEEECCCC
T ss_pred             ceecceEecCCCCEEEEEeccccCchheeEEeccC---------cceecccccc--cccccceEEcCCCCEEEEEEeccc
Confidence            3445678899999998877555554 678999998         454433 222  1123568899999975555421  


Q ss_pred             -------------CCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec---CC--eEEEEEccCCCcc
Q 019059          142 -------------EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC---ES--SVQFWDLRSMGKT  203 (346)
Q Consensus       142 -------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~--~i~i~d~~~~~~~  203 (346)
                                   ...|..+.+.+......+.... ......+..+..++++++++....   +.  .+.+.|+......
T Consensus       194 ~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e-~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~  272 (430)
T d1qfma1         194 DGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEF-PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNG  272 (430)
T ss_dssp             SSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECC-TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSS
T ss_pred             cCcccccccccCCcceEEEEECCCCcccccccccc-ccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccc
Confidence                         2368888887765443333332 112224667778999998775442   23  3555565543211


Q ss_pred             -------ceeeccc---eeEEEeCCCCCcEEEEec---CCCeEEEEEcccCCc-ceeeec-CCCcceEEEEeCCCCCcEE
Q 019059          204 -------NSIEHAH---VRNVDYDTKKKHLLVTAA---DESGIHLWDLRMLKA-PIQELP-GHTHWTWAVCCNPEYDGFI  268 (346)
Q Consensus       204 -------~~~~~~~---v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~-~~~~~~-~~~~~v~~v~~~~~~~~~l  268 (346)
                             ..+....   ..-+. +.++. +++...   .++.|...++..... ....+- .+...+..-.+...+..++
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lv  350 (430)
T d1qfma1         273 ITGILKWVKLIDNFEGEYDYVT-NEGTV-FTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLV  350 (430)
T ss_dssp             SCSSCCCEEEECSSSSCEEEEE-EETTE-EEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEE
T ss_pred             cccccceeEeecccccceEEEe-cCCce-eecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEE
Confidence                   1111111   22222 22232 444333   235677777765332 123333 3444454333333331344


Q ss_pred             EEecCCC--eEEEEecCC
Q 019059          269 LSAGTDS--TVNLWLVST  284 (346)
Q Consensus       269 ~s~~~d~--~i~iwd~~~  284 (346)
                      +..-.++  .|++++...
T Consensus       351 l~~~~~~~~~l~v~~~~~  368 (430)
T d1qfma1         351 LCYLHDVKNTLQLHDLAT  368 (430)
T ss_dssp             EEEEETTEEEEEEEETTT
T ss_pred             EEEEcCCEeEEEEEECCC
Confidence            4545565  588888876

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.29  E-value=0.03  Score=45.26  Aligned_cols=74  Identities=9%  Similarity=-0.035  Sum_probs=43.6

Q ss_pred             eEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecC-----
Q 019059           68 IWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDE-----  142 (346)
Q Consensus        68 v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d-----  142 (346)
                      ....++.+++..++.+   +.....+.+||...       ........+... ..-.+++..++|+ +++.++.+     
T Consensus        78 ~~~~~~~~~g~i~v~G---g~~~~~~~~yd~~~-------~~w~~~~~~~~~-r~~~~~~~~~dG~-v~v~GG~~~~~~~  145 (387)
T d1k3ia3          78 CPGISMDGNGQIVVTG---GNDAKKTSLYDSSS-------DSWIPGPDMQVA-RGYQSSATMSDGR-VFTIGGSWSGGVF  145 (387)
T ss_dssp             SCEEEECTTSCEEEEC---SSSTTCEEEEEGGG-------TEEEECCCCSSC-CSSCEEEECTTSC-EEEECCCCCSSSC
T ss_pred             eeEEEEecCCcEEEee---cCCCcceeEecCcc-------Cccccccccccc-ccccceeeecCCc-eeeeccccccccc
Confidence            3456788888766663   23346899999872       233333333222 2234566677887 45555421     


Q ss_pred             -CeEEEEEcCCC
Q 019059          143 -ENIFLWSLDCS  153 (346)
Q Consensus       143 -~~i~vwd~~~~  153 (346)
                       ..+.+||..+.
T Consensus       146 ~~~v~~yd~~~~  157 (387)
T d1k3ia3         146 EKNGEVYSPSSK  157 (387)
T ss_dssp             CCCEEEEETTTT
T ss_pred             cceeeeecCCCC
Confidence             46889998765

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.95  E-value=0.061  Score=42.74  Aligned_cols=191  Identities=8%  Similarity=-0.030  Sum_probs=100.7

Q ss_pred             eEEeeecCCCCceEEEEe--------ecCCcceEEEEecCcccCCCCCccceeeeeeec----cCCceEEEEe--ecCCC
Q 019059           68 IWDLSSCPFDQRIFSTVF--------STGESYGAAIWQIPELYGQLNSPQLERIAALDA----HVGKINCVLW--WSSGR  133 (346)
Q Consensus        68 v~~~~~~~~~~~l~~~~~--------~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~--~~~~~  133 (346)
                      ..+|...|++..++++..        .....|.|.++|+.....     ....+.....    ..-....++.  .++++
T Consensus        37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~-----~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~  111 (340)
T d1v04a_          37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEP-----AVSELEIIGNTLDISSFNPHGISTFIDDDNT  111 (340)
T ss_dssp             CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSC-----CEEECEEECSSSCGGGCCEEEEEEEECTTCC
T ss_pred             cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCC-----cceEEEecCCCCCCcceeccceeEEEcCCCc
Confidence            345667777766665410        011247888999873211     1111111101    0112344444  34565


Q ss_pred             CcEEEE---ecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec---------------CCeEEEE
Q 019059          134 HDKLVS---IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC---------------ESSVQFW  195 (346)
Q Consensus       134 ~~~~~~---~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------------d~~i~i~  195 (346)
                      ..+++.   ....+|.+|++.....................+.+++..++..+++-..               -..-.+|
T Consensus       112 ~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~  191 (340)
T d1v04a_         112 VYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVT  191 (340)
T ss_dssp             EEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEE
T ss_pred             EEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEE
Confidence            434443   2457899999875543222222212222335788888888876666311               1233444


Q ss_pred             EccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeee--cCCCcceEEEEeCCCC
Q 019059          196 DLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL--PGHTHWTWAVCCNPEY  264 (346)
Q Consensus       196 d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~v~~v~~~~~~  264 (346)
                      ....++......... .+.|+++|++++++++-...+.|++|++...+. +...  ..-....-.+.+.+.+
T Consensus       192 ~~~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~-l~~~~~~~l~~~pDNi~~d~~~  262 (340)
T d1v04a_         192 YYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWT-LTPLRVLSFDTLVDNISVDPVT  262 (340)
T ss_dssp             EECSSCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSC-EEEEEEEECSSEEEEEEECTTT
T ss_pred             EEcCCceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcc-cceEEEecCCCCCCccEEecCC
Confidence            444443322222222 999999999987777778888999999875332 2211  1123445677777643

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.50  E-value=0.13  Score=40.68  Aligned_cols=202  Identities=11%  Similarity=0.096  Sum_probs=108.4

Q ss_pred             cceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeec------CCCCceEEEEeecCCc--ceEEEEecC
Q 019059           28 HTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSC------PFDQRIFSTVFSTGES--YGAAIWQIP   99 (346)
Q Consensus        28 ~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~------~~~~~l~~~~~~~~~d--~~i~vw~~~   99 (346)
                      ...+++|+.   +.+-++++++..  +.+...    ..+.++.+..-      .....++++.  .-.+  ..|.+|.+.
T Consensus        39 ~~SlI~gTd---K~~Gl~vYdL~G--~~l~~~----~~Gr~NNVDvr~~~~l~~~~~di~vas--nR~~~~~~l~~~~id  107 (353)
T d1h6la_          39 QNSKLITTN---KKSGLAVYSLEG--KMLHSY----HTGKLNNVDIRYDFPLNGKKVDIAAAS--NRSEGKNTIEIYAID  107 (353)
T ss_dssp             GGCEEEEEE---TTSCCEEEETTC--CEEEEC----CSSCEEEEEEEEEEEETTEEEEEEEEE--ECCTTTCEEEEEEEE
T ss_pred             CccEEEEEc---CcCCEEEEcCCC--cEEEec----ccCCcCccccccccccCCcceEEEEEe--CCcCcceeEEEEEec
Confidence            567888873   344589998753  333221    23556655543      2222334432  1222  367788875


Q ss_pred             cccCCCCCccceeeeeeec-------cCCceEEEEe--ecCC-CCcEEEEecCCeEEEEEcCCCCCC-c-eeeecccCCC
Q 019059          100 ELYGQLNSPQLERIAALDA-------HVGKINCVLW--WSSG-RHDKLVSIDEENIFLWSLDCSNKN-A-QVQSKQSSGM  167 (346)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~--~~~~-~~~~~~~~~d~~i~vwd~~~~~~~-~-~~~~~~~~~~  167 (346)
                      .        ....+..+..       ....+..+|+  ++.. ...++++..+|.+..|.+...... . ....... ..
T Consensus       108 ~--------~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f-~~  178 (353)
T d1h6la_         108 G--------KNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAF-KM  178 (353)
T ss_dssp             T--------TTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEE-EC
T ss_pred             C--------cccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeecc-CC
Confidence            2        1111222211       1234677777  5554 323455567899998887532211 1 1111111 11


Q ss_pred             ceeeEEEEeCCCCCcEEEEecCCeEEEEEccCC--Cccce---eeccc----eeEEEeC--CCCC-cEEEEecCCCeEEE
Q 019059          168 LHYLSGGAWDPHDVNAVAATCESSVQFWDLRSM--GKTNS---IEHAH----VRNVDYD--TKKK-HLLVTAADESGIHL  235 (346)
Q Consensus       168 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~---~~~~~----v~~~~~~--~~~~-~~l~~~~~dg~i~i  235 (346)
                      ...+.++++.+....|+.+-.+..|..++....  .....   ...++    +..|+.-  +++. +++++.-.+.+..+
T Consensus       179 ~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~v  258 (353)
T d1h6la_         179 NSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAI  258 (353)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEE
T ss_pred             CCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEE
Confidence            236889999998889999988777766665422  11111   11112    6667653  2333 56777667889999


Q ss_pred             EEcccCCcceeeec
Q 019059          236 WDLRMLKAPIQELP  249 (346)
Q Consensus       236 ~d~~~~~~~~~~~~  249 (346)
                      ||.+.....+..|.
T Consensus       259 ydr~~~~~~~g~F~  272 (353)
T d1h6la_         259 YERQGQNKYVADFQ  272 (353)
T ss_dssp             EESSTTCCEEEEEE
T ss_pred             EecCCCccccceEE
Confidence            99876444554543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.34  E-value=0.21  Score=41.02  Aligned_cols=113  Identities=11%  Similarity=0.109  Sum_probs=67.9

Q ss_pred             ceEEEEeecCCCCcEEEEecC----CeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecC--------
Q 019059          122 KINCVLWWSSGRHDKLVSIDE----ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE--------  189 (346)
Q Consensus       122 ~i~~~~~~~~~~~~~~~~~~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------  189 (346)
                      .+..++++|++++++++-+.+    ..++++|+.+++.........      ....++|.+++..++....+        
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~------~~~~~~W~~D~~~~~Y~~~~~~~~~~~~  199 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV------KFSCMAWTHDGKGMFYNAYPQQDGKSDG  199 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE------CSCCEEECTTSSEEEEEECCCCSSCCSS
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccc------cccceEEcCCCCEEEEEEeccccCcccc
Confidence            345667899999755554433    468999999876433222211      22568899999988765422        


Q ss_pred             --------CeEEEEEccCCCccc--eeecc---c-eeEEEeCCCCCcEEEEec--CCCe--EEEEEccc
Q 019059          190 --------SSVQFWDLRSMGKTN--SIEHA---H-VRNVDYDTKKKHLLVTAA--DESG--IHLWDLRM  240 (346)
Q Consensus       190 --------~~i~i~d~~~~~~~~--~~~~~---~-v~~~~~~~~~~~~l~~~~--~dg~--i~i~d~~~  240 (346)
                              ..+..+.+.+....-  .+...   . +..+..+++++++++...  .+..  +.+.|+..
T Consensus       200 ~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~  268 (430)
T d1qfma1         200 TETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQ  268 (430)
T ss_dssp             SCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGG
T ss_pred             cccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCC
Confidence                    257788887764322  22211   1 667888999986655433  2233  44556554

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.79  E-value=0.34  Score=38.73  Aligned_cols=182  Identities=12%  Similarity=0.075  Sum_probs=95.4

Q ss_pred             cceEEeeecCCCCceEEEEeecCCcceEEEEecCccc----CCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEec
Q 019059           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELY----GQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSID  141 (346)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  141 (346)
                      ...+-++.++....++++    +.+ .+.|-.+....    ........++...+    ..|..++|+.+.   +++. .
T Consensus        37 ~~~~LLAVsn~~GLl~aa----~~~-~l~V~~t~~l~~~~~~~~~~~~~~~~~~i----p~v~~vafs~d~---l~v~-~  103 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAA----SGS-KAVVGELQLLRDHITSDSTPLTFKWEKEI----PDVIFVCFHGDQ---VLVS-T  103 (381)
T ss_dssp             SCCBCEEEETTTTEEEEE----ETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEEC----TTEEEEEEETTE---EEEE-E
T ss_pred             cccceEEEeCCCCEEEEE----CCC-EEEEEEHHHHHHHhhccCCCCcceeccCC----CCeEEEEeeCCE---EEEE-e
Confidence            345678888866666664    344 46676654221    01111122222222    358889997552   3333 4


Q ss_pred             CCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceee-------ccceeEE
Q 019059          142 EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE-------HAHVRNV  214 (346)
Q Consensus       142 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-------~~~v~~~  214 (346)
                      ++.+..++...-........     ...++..+.++|.  .++....++.+.++++..++......       .+.+.++
T Consensus       104 ~~~l~~~~~~~l~~~~~~~~-----~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v  176 (381)
T d1xipa_         104 RNALYSLDLEELSEFRTVTS-----FEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAV  176 (381)
T ss_dssp             SSEEEEEESSSTTCEEEEEE-----CSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEE
T ss_pred             CCCEEEEEeecccccccccc-----ccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEE
Confidence            67788888775332211111     1226777888773  56666678999999998876432211       1116777


Q ss_pred             EeCCCCCcEEEEecCCCeEEE-EEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEe
Q 019059          215 DYDTKKKHLLVTAADESGIHL-WDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSA  271 (346)
Q Consensus       215 ~~~~~~~~~l~~~~~dg~i~i-~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~  271 (346)
                      +|++.+. .++++..++ ..+ -++.... .+.........|.+|.|-.+. .++++-
T Consensus       177 ~ws~kgk-q~v~~~g~~-~q~k~~i~~~~-~~~~p~~~~~~v~sI~WL~~~-~F~vvy  230 (381)
T d1xipa_         177 LLKDRSF-QSFAWRNGE-MEKQFEFSLPS-ELEELPVEEYSPLSVTILSPQ-DFLAVF  230 (381)
T ss_dssp             EETTSCE-EEEEEETTE-EEEEEEECCCH-HHHTSCTTTSEEEEEEESSSS-EEEEEE
T ss_pred             EEeCCcE-EEEEeCCCc-eeeccCCCCcc-ccCCCcCCCcceeEEEEecCc-eEEEEE
Confidence            7777765 555553221 211 1222111 111111234467888888766 555443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=95.74  E-value=0.23  Score=39.69  Aligned_cols=106  Identities=10%  Similarity=0.057  Sum_probs=65.3

Q ss_pred             EeCCCCCcEEEEecC-----C------eEEEEEccCCCccc--eeeccc---eeEEEeCCCCCcEEEEecCC-CeEEEEE
Q 019059          175 AWDPHDVNAVAATCE-----S------SVQFWDLRSMGKTN--SIEHAH---VRNVDYDTKKKHLLVTAADE-SGIHLWD  237 (346)
Q Consensus       175 ~~~~~~~~l~~~~~d-----~------~i~i~d~~~~~~~~--~~~~~~---v~~~~~~~~~~~~l~~~~~d-g~i~i~d  237 (346)
                      ....+++.++.++.+     +      .+.+||..+++-..  .....+   ....++.+++. +++.|+.+ ..+.+||
T Consensus        26 ~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~-i~v~Gg~~~~~~~~yd  104 (387)
T d1k3ia3          26 IEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGNDAKKTSLYD  104 (387)
T ss_dssp             EETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC-EEEECSSSTTCEEEEE
T ss_pred             EEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCc-EEEeecCCCcceeEec
Confidence            334466666666631     1      36789999876432  222222   55678889997 77777654 5899999


Q ss_pred             cccCCcceeeecC--CCcceEEEEeCCCCCcEEEEecCC------CeEEEEecCC
Q 019059          238 LRMLKAPIQELPG--HTHWTWAVCCNPEYDGFILSAGTD------STVNLWLVST  284 (346)
Q Consensus       238 ~~~~~~~~~~~~~--~~~~v~~v~~~~~~~~~l~s~~~d------~~i~iwd~~~  284 (346)
                      ..+..  ......  ....-...+..++| .+++.|+.+      ..+.+||..+
T Consensus       105 ~~~~~--w~~~~~~~~~r~~~~~~~~~dG-~v~v~GG~~~~~~~~~~v~~yd~~~  156 (387)
T d1k3ia3         105 SSSDS--WIPGPDMQVARGYQSSATMSDG-RVFTIGGSWSGGVFEKNGEVYSPSS  156 (387)
T ss_dssp             GGGTE--EEECCCCSSCCSSCEEEECTTS-CEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             CccCc--ccccccccccccccceeeecCC-ceeeeccccccccccceeeeecCCC
Confidence            88632  222211  11222345667788 888887753      3688999876

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.78  E-value=0.51  Score=40.32  Aligned_cols=80  Identities=9%  Similarity=0.018  Sum_probs=51.0

Q ss_pred             CeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCc-ceEEEEeCCCCCcE
Q 019059          190 SSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTH-WTWAVCCNPEYDGF  267 (346)
Q Consensus       190 ~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~v~~v~~~~~~~~~  267 (346)
                      |.|.-+|+.+++..-+...+. +.+-..+..+. ++++|+.||.++.+|.++ ++.+-++..... .-.-+.+..+|.+|
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagg-lVF~Gt~dg~l~A~Da~T-Ge~LW~~~~~~~~~~~P~ty~~~G~qY  543 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGN-LVFTGTGDGYFKAFDAKS-GKELWKFQTGSGIVSPPITWEQDGEQY  543 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSCCEEETTT-EEEEECTTSEEEEEETTT-CCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             CeEEEEcCCCCcEEeecCCCCCCccceeEEcCC-eEEEeCCCCeEEEEECCC-CcEeEEEECCCCccccCEEEEECCEEE
Confidence            578888888888777666444 22222233455 778899999999999998 556665553211 11224566788666


Q ss_pred             EEEe
Q 019059          268 ILSA  271 (346)
Q Consensus       268 l~s~  271 (346)
                      ++..
T Consensus       544 v~i~  547 (582)
T d1flga_         544 LGVT  547 (582)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6544

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.74  E-value=0.14  Score=43.86  Aligned_cols=81  Identities=11%  Similarity=-0.056  Sum_probs=47.9

Q ss_pred             CeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCC-CcceEEEEeCCCCCcE
Q 019059          190 SSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGH-THWTWAVCCNPEYDGF  267 (346)
Q Consensus       190 ~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~v~~v~~~~~~~~~  267 (346)
                      |.|.-+|+.+++.+-+..... ..+=...-.+. ++++|+.|+.++.+|.++ ++.+-++... ...-.-+.+..+|.+|
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~Tagg-lVf~G~~dg~l~A~Da~t-Ge~lW~~~l~~~~~a~P~ty~~dGkqY  521 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGG-LVWYATLDGYLKALDNKD-GKELWNFKMPSGGIGSPMTYSFKGKQY  521 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTT-EEEEECTTSEEEEEETTT-CCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcceeEecCC-EEEEECCCCeEEEEECCC-CcEEEEEECCCCceecceEEEECCEEE
Confidence            357777888887665554333 11111111344 788899999999999998 4456555421 1112224555688667


Q ss_pred             EEEec
Q 019059          268 ILSAG  272 (346)
Q Consensus       268 l~s~~  272 (346)
                      +++..
T Consensus       522 i~v~~  526 (571)
T d2ad6a1         522 IGSMY  526 (571)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            76544

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=94.62  E-value=0.61  Score=39.61  Aligned_cols=19  Identities=0%  Similarity=0.214  Sum_probs=17.3

Q ss_pred             cEEEEecCCCeEEEEecCC
Q 019059          266 GFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       266 ~~l~s~~~d~~i~iwd~~~  284 (346)
                      .+++.|+.||.++.+|.++
T Consensus       470 glVF~G~~dg~l~A~Da~t  488 (560)
T d1kv9a2         470 NLVFQGTAAGQMHAYSADK  488 (560)
T ss_dssp             TEEEEECTTSEEEEEETTT
T ss_pred             CEEEEECCCCcEEEEECCC
Confidence            5777899999999999999

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.41  E-value=0.86  Score=35.79  Aligned_cols=186  Identities=11%  Similarity=0.146  Sum_probs=98.5

Q ss_pred             ccCCCCcceEEEeecc--------cCCCCeEEEEEecCCCCeEEEeeeeccc-----cceEEeee--cCCCCceEEEEee
Q 019059           22 VKADTDHTSFLTGTLS--------LKEENEVHLLRLSSGGTELICEGLFSHP-----NEIWDLSS--CPFDQRIFSTVFS   86 (346)
Q Consensus        22 ~~~~~~~~~~~~g~~~--------~~~~~~i~~~~~~~~~~~~~~~~~~~h~-----~~v~~~~~--~~~~~~l~~~~~~   86 (346)
                      +...+++..|+.+...        ....+.++++++.+.........+.+..     -....+..  .++++..+.+..-
T Consensus        40 i~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH  119 (340)
T d1v04a_          40 LEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNH  119 (340)
T ss_dssp             EEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEEC
T ss_pred             EEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEec
Confidence            4455666666554321        1234889999988765444333322211     12233333  3455544444322


Q ss_pred             cCCcceEEEEecCcccCCCCCccceeeeeeecc-CCceEEEEeecCCCCcEEEEec----C------------CeEEEEE
Q 019059           87 TGESYGAAIWQIPELYGQLNSPQLERIAALDAH-VGKINCVLWWSSGRHDKLVSID----E------------ENIFLWS  149 (346)
Q Consensus        87 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~----d------------~~i~vwd  149 (346)
                      .+...+|.++++...     ......+.++... ....+.+.+..++.  ++++-.    +            ....+|.
T Consensus       120 ~~~~~~ieif~~~~~-----~~~l~~~~~v~~~~~~~pNDv~~~~~g~--fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~  192 (340)
T d1v04a_         120 PGSSSTVEVFKFQEE-----EKSLLHLKTIRHKLLPSVNDIVAVGPEH--FYATNDHYFIDPYLKSWEMHLGLAWSFVTY  192 (340)
T ss_dssp             STTCCEEEEEEEETT-----TTEEEEEEEECCTTCSSEEEEEEEETTE--EEEEESCSCCSHHHHHHHHHTTCCCEEEEE
T ss_pred             cCCCceeEEEEEeCC-----CCeEEEEeecCCccccCccceEEecCCC--EEEecCccCcChhhhhhhHhhcCCceeEEE
Confidence            234567888888621     1123333344222 24578899888887  444411    0            2334444


Q ss_pred             cCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEe-cCCeEEEEEccCCCccceee---ccc-eeEEEeCCCC
Q 019059          150 LDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT-CESSVQFWDLRSMGKTNSIE---HAH-VRNVDYDTKK  220 (346)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~---~~~-v~~~~~~~~~  220 (346)
                      .+.+.  .+.....    ....++++++|+++.++++. ..+.|++|++..........   .+. +-.+.+.+.+
T Consensus       193 ~~~~~--~~~~~~~----l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~  262 (340)
T d1v04a_         193 YSPND--VRVVAEG----FDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVT  262 (340)
T ss_dssp             ECSSC--EEEEEEE----ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTT
T ss_pred             EcCCc--eEEEcCC----CCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCC
Confidence            44332  1222211    22678999999999887776 47899999987554332221   111 6667776543

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=94.10  E-value=1  Score=35.46  Aligned_cols=164  Identities=10%  Similarity=0.092  Sum_probs=90.3

Q ss_pred             EEEeecccCCCCeEEEEEecCCCCeEEEeeeecc-----ccceEEeee--cCCCCceEEEEeecCCcceEEEEecCcccC
Q 019059           31 FLTGTLSLKEENEVHLLRLSSGGTELICEGLFSH-----PNEIWDLSS--CPFDQRIFSTVFSTGESYGAAIWQIPELYG  103 (346)
Q Consensus        31 ~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~--~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~  103 (346)
                      +++++.-....+.+.+|.+......+.......+     ...+..+|+  +|....+.+..  ...++.+..|.+.....
T Consensus        88 i~vasnR~~~~~~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv--~~k~G~v~q~~l~~~~~  165 (353)
T d1h6la_          88 IAAASNRSEGKNTIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMV--TGKEGEFEQYELNADKN  165 (353)
T ss_dssp             EEEEEECCTTTCEEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEE--ECSSSEEEEEEEEECTT
T ss_pred             EEEEeCCcCcceeEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEE--EcCCceEEEEEEEcCCC
Confidence            4454433333467888888766554432221111     134677777  66655433322  36788888888752111


Q ss_pred             CCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCC-Cceeeec-ccCCCceeeEEEEeCC--C
Q 019059          104 QLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNK-NAQVQSK-QSSGMLHYLSGGAWDP--H  179 (346)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~-~~~~~~~-~~~~~~~~v~~~~~~~--~  179 (346)
                      .  ....+.++.+.. ...+..|.+.+.... ++.+-++.-|..++.+.... ...+... ........+.+++.-.  +
T Consensus       166 g--~v~~~lvr~f~~-~~q~EGCVvDde~~~-LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~  241 (353)
T d1h6la_         166 G--YISGKKVRAFKM-NSQTEGMAADDEYGS-LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAAD  241 (353)
T ss_dssp             S--SEEEEEEEEEEC-SSCEEEEEEETTTTE-EEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGG
T ss_pred             C--ceeeEeeeccCC-CCccceEEEeCCCCc-EEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCC
Confidence            1  123455566633 456888888887775 66665666666666543221 1222211 1112344677776532  3


Q ss_pred             CC-cEEEEe-cCCeEEEEEccCC
Q 019059          180 DV-NAVAAT-CESSVQFWDLRSM  200 (346)
Q Consensus       180 ~~-~l~~~~-~d~~i~i~d~~~~  200 (346)
                      +. +|++++ .+++..+||..+.
T Consensus       242 ~~GylivSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         242 GKGYLLASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             GCEEEEEEEGGGTEEEEEESSTT
T ss_pred             CCeEEEEEcCCCCeEEEEecCCC
Confidence            33 566655 4789999998764

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=94.06  E-value=0.16  Score=43.38  Aligned_cols=82  Identities=6%  Similarity=0.075  Sum_probs=49.0

Q ss_pred             CeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCc-ceEEEEeCCCCCcE
Q 019059          190 SSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTH-WTWAVCCNPEYDGF  267 (346)
Q Consensus       190 ~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~v~~v~~~~~~~~~  267 (346)
                      |.|.-+|+.+++.+-....+. ..+-...-.+. +++.|+.||.++.+|.++ ++.+-++..... .-.-+.+..+|.++
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~Tagg-lVF~G~~dg~l~A~Da~t-Ge~LW~~~l~~~~~~~P~ty~~dGkqy  515 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGN-LVFQGTAAGQMHAYSADK-GEALWQFEAQSGIVAAPMTFELAGRQY  515 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTT-EEEEECTTSEEEEEETTT-CCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeEECCC-EEEEECCCCcEEEEECCC-CcEeEEEECCCCccccCEEEEECCEEE
Confidence            457778888887766655333 22212222344 788899999999999998 555655543211 11123455677567


Q ss_pred             EEEecC
Q 019059          268 ILSAGT  273 (346)
Q Consensus       268 l~s~~~  273 (346)
                      |+..+.
T Consensus       516 v~v~aG  521 (560)
T d1kv9a2         516 VAIMAG  521 (560)
T ss_dssp             EEEEEC
T ss_pred             EEEEeC
Confidence            665443

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=93.80  E-value=1.4  Score=36.05  Aligned_cols=50  Identities=6%  Similarity=0.094  Sum_probs=34.9

Q ss_pred             eeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceee--------ccc--eeEEEeCCC
Q 019059          170 YLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE--------HAH--VRNVDYDTK  219 (346)
Q Consensus       170 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--------~~~--v~~~~~~~~  219 (346)
                      ...+++|.|+++.+++--..|.|++++..+++......        .++  ...|+++|+
T Consensus        28 ~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            56799999999866555347999999887765322111        112  789999986

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=93.54  E-value=0.47  Score=40.45  Aligned_cols=21  Identities=10%  Similarity=0.177  Sum_probs=18.4

Q ss_pred             CCCcEEEEecCCCeEEEEecCC
Q 019059          263 EYDGFILSAGTDSTVNLWLVST  284 (346)
Q Consensus       263 ~~~~~l~s~~~d~~i~iwd~~~  284 (346)
                      .+ .++++|+.|+.++.+|.++
T Consensus       487 ag-glVF~G~~dg~l~A~Da~T  507 (573)
T d1kb0a2         487 AG-NVVFQGTADGRLVAYHAAT  507 (573)
T ss_dssp             TT-TEEEEECTTSEEEEEETTT
T ss_pred             cC-CEEEEECCCCeEEEEECCC
Confidence            45 6788899999999999999

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=92.30  E-value=0.67  Score=39.66  Aligned_cols=80  Identities=5%  Similarity=-0.034  Sum_probs=47.7

Q ss_pred             CeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCC-cceEEEEeCCCCCcE
Q 019059          190 SSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHT-HWTWAVCCNPEYDGF  267 (346)
Q Consensus       190 ~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~v~~v~~~~~~~~~  267 (346)
                      |.|.-||+.+++.+-...... ..+=..+..+. +++.|+.||.++.+|.++ ++.+-++.... ..-.-+.+..+|.+|
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagg-lVF~G~~Dg~l~A~Da~T-Ge~LW~~~~~~~~~a~P~tY~~dGkQY  530 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAGD-LVFYGTLDGYLKARDSDT-GDLLWKFKIPSGAIGYPMTYTHKGTQY  530 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTT-EEEEECTTSEEEEEETTT-CCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             ceEEEEeCCCCceecccCCCCCCccceeEecCC-EEEEECCCCeEEEEECCC-CcEeeEEECCCCcccCCeEEEECCEEE
Confidence            457777888887665544332 22212222455 778899999999999998 55665554221 111223455578667


Q ss_pred             EEEe
Q 019059          268 ILSA  271 (346)
Q Consensus       268 l~s~  271 (346)
                      ++..
T Consensus       531 vav~  534 (596)
T d1w6sa_         531 VAIY  534 (596)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7654

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.10  E-value=3  Score=35.25  Aligned_cols=52  Identities=10%  Similarity=-0.054  Sum_probs=32.3

Q ss_pred             CeEEEEEccCCCccceeeccc-------------eeEEEeCCCCCcEEEEecCCCeEEEEEcccC
Q 019059          190 SSVQFWDLRSMGKTNSIEHAH-------------VRNVDYDTKKKHLLVTAADESGIHLWDLRML  241 (346)
Q Consensus       190 ~~i~i~d~~~~~~~~~~~~~~-------------v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  241 (346)
                      ..+.-.|.++++.+-.++..+             ...+.........++.++.+|.+.++|..+.
T Consensus       272 ~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG  336 (571)
T d2ad6a1         272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENG  336 (571)
T ss_dssp             TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTC
T ss_pred             cceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCC
Confidence            457778999998776555322             2223332222225667888899999997763

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=90.88  E-value=3.4  Score=33.63  Aligned_cols=113  Identities=8%  Similarity=-0.076  Sum_probs=58.5

Q ss_pred             ccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeee------ccCCceEEEEeecC---CCCc
Q 019059           65 PNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD------AHVGKINCVLWWSS---GRHD  135 (346)
Q Consensus        65 ~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~---~~~~  135 (346)
                      -...++|+|.|+++.+++-    -..|.|++++...       ...+.+..+.      .-+.....|+++|+   ..++
T Consensus        26 L~~P~~la~~pdg~llVte----r~~G~i~~v~~~~-------g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~i   94 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTE----RATGKILRVNPES-------GSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYI   94 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEE----TTTCEEEEECTTT-------CCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEE
T ss_pred             CCCceEEEEeCCCeEEEEE----ecCCEEEEEECCC-------CcEeecccCCccccccCCCCceeeEEeCCCCccCCEE
Confidence            3567899999999877763    2367888887651       1222222221      12356788999985   3333


Q ss_pred             EEEEec------C----C--eEEEEEcCCCCCCc----eeeecccCCCceeeEEEEeCCCCCcEEEEec
Q 019059          136 KLVSID------E----E--NIFLWSLDCSNKNA----QVQSKQSSGMLHYLSGGAWDPHDVNAVAATC  188 (346)
Q Consensus       136 ~~~~~~------d----~--~i~vwd~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  188 (346)
                      +++-..      +    .  .+..+.........    .+.........+....+.|.|++.+.++.+.
T Consensus        95 Yvsyt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_          95 YISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             EEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             EEEEecCCCCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence            332210      0    1  23333333222111    0111111111235678999999987666653

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=90.47  E-value=2.2  Score=36.17  Aligned_cols=47  Identities=9%  Similarity=0.046  Sum_probs=33.2

Q ss_pred             CCCcEEEEecCCeEEEEEccCCCccceeeccc-e--eEEEeCCCCCcEEE
Q 019059          179 HDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-V--RNVDYDTKKKHLLV  225 (346)
Q Consensus       179 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-v--~~~~~~~~~~~~l~  225 (346)
                      .+..+++++.|+.++.+|.++++.+-++..+. +  .-+.|..+|+.+++
T Consensus       487 agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~  536 (573)
T d1kb0a2         487 AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS  536 (573)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEE
Confidence            46678888889999999999999988777544 1  12444456663433

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.71  E-value=0.55  Score=40.12  Aligned_cols=77  Identities=8%  Similarity=0.017  Sum_probs=49.1

Q ss_pred             CeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCC
Q 019059          143 ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTK  219 (346)
Q Consensus       143 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~  219 (346)
                      |.|.-+|+.+++...+.....      ++.+-..+..+..+++++.|+.++.+|.++|+.+-++..+.   -.-+.|..+
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~------p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~  539 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHL------PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQD  539 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESS------CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred             CeEEEEcCCCCcEEeecCCCC------CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEEC
Confidence            456667777766555544322      11111222356778888889999999999999998877544   223566677


Q ss_pred             CCcEEE
Q 019059          220 KKHLLV  225 (346)
Q Consensus       220 ~~~~l~  225 (346)
                      |+.+++
T Consensus       540 G~qYv~  545 (582)
T d1flga_         540 GEQYLG  545 (582)
T ss_dssp             TEEEEE
T ss_pred             CEEEEE
Confidence            764443

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=84.55  E-value=0.59  Score=40.05  Aligned_cols=78  Identities=9%  Similarity=0.001  Sum_probs=48.5

Q ss_pred             CeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCC
Q 019059          143 ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTK  219 (346)
Q Consensus       143 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~  219 (346)
                      |.|.-||+.+++...+.....      ...+-..+..+..+++++.||.++.+|.++++.+-++..+.   -.-+.|..+
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~------~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~d  526 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERF------AVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHK  526 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESS------CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred             ceEEEEeCCCCceecccCCCC------CCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEEC
Confidence            467777777776554443322      11111222246778888889999999999999998877444   223445556


Q ss_pred             CCcEEEE
Q 019059          220 KKHLLVT  226 (346)
Q Consensus       220 ~~~~l~~  226 (346)
                      |+.+++.
T Consensus       527 GkQYvav  533 (596)
T d1w6sa_         527 GTQYVAI  533 (596)
T ss_dssp             TEEEEEE
T ss_pred             CEEEEEE
Confidence            7644443