Citrus Sinensis ID: 019065

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340------
MFMSSQFRIILLSIDTLCNLKGQDEKVANEVEDVSLSVEVSSETESSNLNCQNKNVNNSVENISLSTDVSFVKNPSKGSCIKTDLHSDIYSLPPTESLSDPSFVGEVSPNLNGHYEKADMEEKVANFIQNGDLDIIEDRAMILNGSALTSKQIASFATVNHPLSEDHLGTGVEGADFDSSEARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNILRVI
ccccccEEEEEEEEHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccEEEEEEEcccccEEEEEEEcccccccccccccccccccccccccccccEEEEEEcccEEEEEEEEEccEEEEccccccccccccccEEEEEc
ccccHcEEEEEEEEccccccccccccHccccccccccEEEcccccccHcccccccccccHcccccccccEEEEcccccccccccccccccccccccccccHHHccccccHHccccccccHHHHHHHHHHccccccccccccHccccHHHHHccccccccccccccHHccccccccccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccccEEEEEEEccccccccccccccccccccccccccccEEEEEEEccccEEEEEEEEccEEEEccccccccccccEcEEEEEc
MFMSSQFRIILLSIDTLCNLKGQDEKVANEVEDVSLSVEVSsetessnlncqnknvnnSVENISlstdvsfvknpskgsciktdlhsdiyslppteslsdpsfvgevspnlnghyekaDMEEKVANFIQNGDLDIIEDRAMILNGSALTSKQIASFatvnhplsedhlgtgvegadfdsseaRRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQYSGDGEIVEVagsfngwhhrikmdplpsssiiepirsrkSRLWSTVLWLYPGTYEIKFIVdgqwkvdpqresvtkggicnnilrvi
MFMSSQFRIILLSIDTLCNLKGQDEKVANEVEDVSLSVEVssetessnlncqnknVNNSVENISLSTDVSFVKNPSKGSCIKTDLHSDIYSLPPTESLSDPSFVGEVSPNLNGHYEKADMEEKVANFIQNGDLDIIEDRAMILNGSALTSKQIASFATVNHPLSEDHLGTGVEGADFDSSEARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALsvlqtkavteinkaeklisdkdeELIAAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHrikmdplpsssiiepirsrksrlwSTVLWLYPGTYEIKFIVDGQWKVDpqresvtkggicnnilrvi
MFMSSQFRIILLSIDTLCNLKGQDEKVANevedvslsvevssetessNLNCQNKNVNNSVENISLSTDVSFVKNPSKGSCIKTDLHSDIYSLPPTESLSDPSFVGEVSPNLNGHYEKADMEEKVANFIQNGDLDIIEDRAMILNGSALTSKQIASFATVNHPLSEDHLGTGVEGADFDSSEARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDplpsssiiepirsrksrLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNILRVI
******FRIILLSIDTLCNLKG**********************************************************I*****************************************KVANFIQNGDLDIIEDRAMILNGSALTSKQIASFATVN*********************************LKFML******************LALSVLQTKAVTEINKA**LI******LIAAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNILR**
*****QFRIILLSIDT*************************************************STDVSFV******************S*****SL**********************************************************************************************************************************************************GLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSS******SRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNILRVI
MFMSSQFRIILLSIDTLCNLKGQDEKVANEVED****************NCQNKNVNNSVENISLSTDVSFVKNPSKGSCIKTDLHSDIYSLPPTESLSDPSFVGEVSPNLNGHYEKADMEEKVANFIQNGDLDIIEDRAMILNGSALTSKQIASFATVNHPLSEDHLGTGVEGADFDSSEARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNILRVI
***SSQFRIILLSIDTLCNLKGQDEKVANEVEDVSLSVEVSSETESSNLNC**KNVNNSVENISLSTDVSFVKNPSKGSCI***L*S*********SLSDPSFVGEVSPNLNGHYEKADMEEKVANFIQNGDLDIIEDRAMILNGSALTSKQIASFATVNHPLSED*LGTGVEGADFDSSEARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNILRVI
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MFMSSQFRIILLSIDTLCNLKGQDEKVANEVEDVSLSVEVSSETESSNLNCQNKNVNNSVENISLSTDVSFVKNPSKGSCIKTDLHSDIYSLPPTESLSDPSFVGEVSPNLNGHYEKADMEEKVANFIQNGDLDIIEDRAMILNGSALTSKQIASFATVNHPLSEDHLGTGVEGADFDSSEARRRENQLExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAVTExxxxxxxxxxxxxxxxxxxxxLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNILRVI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query346 2.2.26 [Sep-21-2011]
Q9R078 270 5'-AMP-activated protein yes no 0.300 0.385 0.293 0.0001
P78789 298 Uncharacterized protein C yes no 0.150 0.174 0.363 0.0001
P80386 270 5'-AMP-activated protein yes no 0.300 0.385 0.301 0.0001
P80387122 5'-AMP-activated protein no no 0.300 0.852 0.277 0.0005
Q9Y478 270 5'-AMP-activated protein yes no 0.300 0.385 0.277 0.0006
O43741 272 5'-AMP-activated protein no no 0.213 0.272 0.340 0.0006
Q5R801 270 5'-AMP-activated protein yes no 0.300 0.385 0.277 0.0006
Q5BIS9 270 5'-AMP-activated protein yes no 0.300 0.385 0.269 0.0007
Q9QZH4 271 5'-AMP-activated protein no no 0.213 0.273 0.340 0.0008
Q6PAM0 271 5'-AMP-activated protein no no 0.213 0.273 0.340 0.0008
>sp|Q9R078|AAKB1_MOUSE 5'-AMP-activated protein kinase subunit beta-1 OS=Mus musculus GN=Prkab1 PE=1 SV=2 Back     alignment and function desciption
 Score = 48.1 bits (113), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 22/126 (17%)

Query: 228 TEINKAEKLISDKDEELIAAEESLSGLEVVEIQ-------YSGDGEIVEVAGSFNGWHHR 280
            +I  +E++ + + EE +A +  L   +    Q       ++G G+ V ++GSFN W   
Sbjct: 44  ADIFHSEEIKAPEKEEFLAWQHDLEANDKAPAQARPTVFRWTGGGKEVYLSGSFNNW--- 100

Query: 281 IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKG-GIC 339
                    S +   RS+ +  +  +L L  G ++ KF VDGQW  DP    VT   G  
Sbjct: 101 ---------SKLPLTRSQNN--FVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTV 149

Query: 340 NNILRV 345
           NNI++V
Sbjct: 150 NNIIQV 155
Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).
Mus musculus (taxid: 10090)
>sp|P78789|YC63_SCHPO Uncharacterized protein C1919.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1919.03c PE=1 SV=2 Back     alignment and function description
>sp|P80386|AAKB1_RAT 5'-AMP-activated protein kinase subunit beta-1 OS=Rattus norvegicus GN=Prkab1 PE=1 SV=4 Back     alignment and function description
>sp|P80387|AAKB1_PIG 5'-AMP-activated protein kinase subunit beta-1 (Fragment) OS=Sus scrofa GN=PRKAB1 PE=1 SV=1 Back     alignment and function description
>sp|Q9Y478|AAKB1_HUMAN 5'-AMP-activated protein kinase subunit beta-1 OS=Homo sapiens GN=PRKAB1 PE=1 SV=4 Back     alignment and function description
>sp|O43741|AAKB2_HUMAN 5'-AMP-activated protein kinase subunit beta-2 OS=Homo sapiens GN=PRKAB2 PE=1 SV=1 Back     alignment and function description
>sp|Q5R801|AAKB1_PONAB 5'-AMP-activated protein kinase subunit beta-1 OS=Pongo abelii GN=PRKAB1 PE=2 SV=3 Back     alignment and function description
>sp|Q5BIS9|AAKB1_BOVIN 5'-AMP-activated protein kinase subunit beta-1 OS=Bos taurus GN=PRKAB1 PE=2 SV=3 Back     alignment and function description
>sp|Q9QZH4|AAKB2_RAT 5'-AMP-activated protein kinase subunit beta-2 OS=Rattus norvegicus GN=Prkab2 PE=1 SV=1 Back     alignment and function description
>sp|Q6PAM0|AAKB2_MOUSE 5'-AMP-activated protein kinase subunit beta-2 OS=Mus musculus GN=Prkab2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query346
297739960 471 unnamed protein product [Vitis vinifera] 0.797 0.585 0.507 9e-80
255556890 612 hypothetical protein RCOM_1354150 [Ricin 0.800 0.452 0.501 3e-78
224068793 626 predicted protein [Populus trichocarpa] 0.945 0.522 0.458 2e-75
356545991 622 PREDICTED: uncharacterized protein LOC10 0.653 0.363 0.616 2e-73
449451223 649 PREDICTED: uncharacterized protein LOC10 0.783 0.417 0.454 4e-68
186519755 598 5'-AMP-activated protein kinase-like pro 0.635 0.367 0.526 2e-59
297806299 636 hypothetical protein ARALYDRAFT_487117 [ 0.635 0.345 0.505 5e-59
7378624 583 putative protein [Arabidopsis thaliana] 0.471 0.279 0.466 5e-31
168029298 548 predicted protein [Physcomitrella patens 0.468 0.295 0.395 1e-24
297790768334 hypothetical protein ARALYDRAFT_359028 [ 0.228 0.236 0.658 8e-17
>gi|297739960|emb|CBI30142.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  303 bits (776), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 173/341 (50%), Positives = 214/341 (62%), Gaps = 65/341 (19%)

Query: 52  QNKNVNNSVENISLSTDVSFVKNPSKGSCIKTDLHSDIYSLPPTESLSDPSFVGEVSPNL 111
           Q++   + VE++ LS         SKGS +++ +         T +  DPSF  +    +
Sbjct: 147 QDEKAKDLVEDVPLS---------SKGSIMESGV---------TNANIDPSFNNDEQSCI 188

Query: 112 NGHYEKADMEEKVANFIQNGDLDIIEDR-------------------------------- 139
                 +  +EKVA FIQNG+LD IED                                 
Sbjct: 189 RESSTHSSFQEKVAKFIQNGELDTIEDNDYGILSGAAAEEGKGVIDSENTIELESRPLAE 248

Query: 140 ------------AMILNGSALTSKQIASFATVNHPLSEDHLGT-GVEGADFDSS--EARR 184
                       A ILNGS L S QI    T N PL +D   + G+  ADFD+   E   
Sbjct: 249 LHVEHASSGSNAAKILNGSTLFSDQIVPPVTRNDPLGDDRFSSEGLISADFDNLGIETNE 308

Query: 185 RENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEEL 244
            ENQ+E++HLK MLHQKE+ELS+LK+QIEKEKLAL++LQTKA TEI+KA+K++ +KD EL
Sbjct: 309 GENQVEVNHLKLMLHQKELELSQLKKQIEKEKLALTILQTKAETEISKAQKIVLEKDAEL 368

Query: 245 IAAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWS 304
            AAEESLSGL+ V+IQYSGDGEIVEVAGSFNGWHHRIKMDP PSSS  EP+ SRKSRLWS
Sbjct: 369 NAAEESLSGLKEVQIQYSGDGEIVEVAGSFNGWHHRIKMDPQPSSSSKEPVGSRKSRLWS 428

Query: 305 TVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNILRV 345
           TVLWLYPG YEIKF++DGQW++DPQ E+VT+G I NNILRV
Sbjct: 429 TVLWLYPGLYEIKFVIDGQWRIDPQSETVTRGTIDNNILRV 469

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255556890|ref|XP_002519478.1| hypothetical protein RCOM_1354150 [Ricinus communis] gi|223541341|gb|EEF42892.1| hypothetical protein RCOM_1354150 [Ricinus communis] Back     alignment and taxonomy information
>gi|224068793|ref|XP_002326201.1| predicted protein [Populus trichocarpa] gi|222833394|gb|EEE71871.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356545991|ref|XP_003541416.1| PREDICTED: uncharacterized protein LOC100805984 [Glycine max] Back     alignment and taxonomy information
>gi|449451223|ref|XP_004143361.1| PREDICTED: uncharacterized protein LOC101203013 [Cucumis sativus] gi|449482584|ref|XP_004156334.1| PREDICTED: uncharacterized protein LOC101225132 [Cucumis sativus] Back     alignment and taxonomy information
>gi|186519755|ref|NP_195962.2| 5'-AMP-activated protein kinase-like protein [Arabidopsis thaliana] gi|332003218|gb|AED90601.1| 5'-AMP-activated protein kinase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297806299|ref|XP_002871033.1| hypothetical protein ARALYDRAFT_487117 [Arabidopsis lyrata subsp. lyrata] gi|297316870|gb|EFH47292.1| hypothetical protein ARALYDRAFT_487117 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|7378624|emb|CAB83300.1| putative protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|168029298|ref|XP_001767163.1| predicted protein [Physcomitrella patens subsp. patens] gi|162681659|gb|EDQ68084.1| predicted protein [Physcomitrella patens subsp. patens] Back     alignment and taxonomy information
>gi|297790768|ref|XP_002863269.1| hypothetical protein ARALYDRAFT_359028 [Arabidopsis lyrata subsp. lyrata] gi|297309103|gb|EFH39528.1| hypothetical protein ARALYDRAFT_359028 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query346
TAIR|locus:2142669598 AT5G03420 "AT5G03420" [Arabido 0.829 0.479 0.471 3.7e-55
TAIR|locus:2167067273 AT5G39790 "AT5G39790" [Arabido 0.436 0.553 0.295 9.1e-09
UNIPROTKB|P80387122 PRKAB1 "5'-AMP-activated prote 0.297 0.844 0.272 0.00027
TAIR|locus:2142669 AT5G03420 "AT5G03420" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
 Identities = 143/303 (47%), Positives = 180/303 (59%)

Query:    50 NCQNKNVNNSVENISLSTDVSFVKNPSKGSCIKTDLHSDIYSLPP-TESLSDPSFVGEVS 108
             N QN+ +++   N S S D S V+  S+ +   + L S   S+   T       ++  V 
Sbjct:   302 NFQNQQIDDIAANRSGSADDSLVE--SEDNDWMSGLSSCTSSIEEKTTRFIQNGYLDTVG 359

Query:   109 PNLNGHYEKADMEEKVANFIQNGDL--DIIED-RAMI--LNGSALTSKQIASFATVNHPL 163
              + N    ++  EE  +   + G+   D +   R M   LNGSAL  K+I     VN   
Sbjct:   360 ADENDIPNESCPEES-SETTKGGEYIGDSLGGPRIMSTPLNGSALALKEIIHATEVNSSD 418

Query:   164 SEDHLGTGVEGADFDSS-EARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVL 222
                    G  G D D   E R+RENQ+EID L+FML QKE+ELSRLKEQIEKEKL+LSVL
Sbjct:   419 RNSDQRDGSVGLDTDPHHETRKRENQVEIDRLRFMLDQKELELSRLKEQIEKEKLSLSVL 478

Query:   223 QTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIK 282
             Q +A TEI KA+ LIS+K+ EL  AEESLSGL+ V I+Y GDG  VEV GSFNGW HR+ 
Sbjct:   479 QRQAETEIQKAQMLISEKEVELQEAEESLSGLQEVVIEYCGDGNAVEVTGSFNGWQHRVG 538

Query:   283 MDXXXXXXXXXXXXXXXXXLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNI 342
             M+                  WST+LWLYPGTYEIKFIVDGQW  DPQ++SVT+G I NNI
Sbjct:   539 MELQASKSIGKQK------CWSTLLWLYPGTYEIKFIVDGQWITDPQKDSVTRGHISNNI 592

Query:   343 LRV 345
             L+V
Sbjct:   593 LKV 595
GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0009507 "chloroplast" evidence=ISM
TAIR|locus:2167067 AT5G39790 "AT5G39790" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P80387 PRKAB1 "5'-AMP-activated protein kinase subunit beta-1" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00280219
hypothetical protein (626 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query346
cd0285980 cd02859, E_set_AMPKbeta_like_N, N-terminal Early s 9e-23
cd0718486 cd07184, E_set_Isoamylase_like_N, N-terminal Early 2e-04
cd0268882 cd02688, E_set, Early set domain associated with t 8e-04
>gnl|CDD|199889 cd02859, E_set_AMPKbeta_like_N, N-terminal Early set domain, a glycogen binding domain, associated with the catalytic domain of AMP-activated protein kinase beta subunit Back     alignment and domain information 
 Score = 90.0 bits (224), Expect = 9e-23
 Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 14/91 (15%)

Query: 257 VEIQYSG-DGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYE 315
           V  ++ G  G+ V V GSF+ W   I ++                  +S  + L PG YE
Sbjct: 2   VTFRWPGPGGKEVYVTGSFDNWQQPIPLEKSGDGE------------FSATVELPPGRYE 49

Query: 316 IKFIVDGQWKVDPQRESVT-KGGICNNILRV 345
            KFIVDG+W  DP   +VT + G  NN+L V
Sbjct: 50  YKFIVDGEWVHDPDLPTVTDEFGNLNNVLEV 80

E or "early" set domains are associated with the catalytic domain of AMP-activated protein kinase beta subunit glycogen binding domain at the N-terminal end. AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as an alpha-beta-gamma heterotrimer. This N-terminal domain is the glycogen binding domain of the beta subunit. This domain is also a member of the CBM48 (Carbohydrate Binding Module 48) family whose members include pullulanase, maltooligosyl trehalose synthase, starch branching enzyme, glycogen branching enzyme, glycogen debranching enzyme, and isoamylase. Length = 80
>gnl|CDD|199892 cd07184, E_set_Isoamylase_like_N, N-terminal Early set domain associated with the catalytic domain of isoamylase-like (also called glycogen 6-glucanohydrolase) proteins Back     alignment and domain information
>gnl|CDD|199878 cd02688, E_set, Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 346
cd0285979 AMPKbeta_GBD_like AMP-activated protein kinase (AM 99.91
cd0286182 E_set_proteins_like E or "early" set-like proteins 99.79
KOG1616 289 consensus Protein involved in Snf1 protein kinase 99.61
cd0285885 Esterase_N_term Esterase N-terminal domain. Estera 99.31
cd0268883 E_set E or "early" set of sugar utilizing enzymes 98.95
cd0285499 Glycogen_branching_enzyme_like_N_term Glycogen bra 98.57
PF0292285 CBM_48: Carbohydrate-binding module 48 (Isoamylase 98.49
cd02860100 Pullulanase_N_term Pullulanase domain N-terminus. 97.98
cd0580895 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM2 97.91
cd02855106 Glycogen_branching_enzyme_N_term Glycogen branchin 97.79
PF0068696 CBM_20: Starch binding domain; InterPro: IPR002044 97.63
COG0296 628 GlgB 1,4-alpha-glucan branching enzyme [Carbohydra 97.62
PRK12313 633 glycogen branching enzyme; Provisional 97.46
cd05814120 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate- 97.41
cd02856103 Glycogen_debranching_enzyme_N_term Glycogen_debran 97.41
cd0581892 CBM20_water_dikinase Phosphoglucan water dikinase 97.41
PRK12568 730 glycogen branching enzyme; Provisional 97.38
cd0580999 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 97.33
cd05820103 CBM20_novamyl Novamyl (also known as acarviose tra 97.32
PLN02447 758 1,4-alpha-glucan-branching enzyme 97.29
cd0285385 MTHase_N_term Maltooligosyl trehalose synthase (MT 97.22
PRK14706 639 glycogen branching enzyme; Provisional 97.2
cd05811106 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-g 97.13
PRK14705 1224 glycogen branching enzyme; Provisional 97.13
cd02852119 Isoamylase_N_term Isoamylase N-terminus domain. Is 97.13
PRK05402 726 glycogen branching enzyme; Provisional 97.07
TIGR02402 542 trehalose_TreZ malto-oligosyltrehalose trehalohydr 97.01
cd05817100 CBM20_DSP Dual-specificity phosphatase (DSP), N-te 96.99
cd05807101 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrat 96.95
cd0581395 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 96.92
cd0546796 CBM20 The family 20 carbohydrate-binding module (C 96.9
cd0581699 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DP 96.82
TIGR01515 613 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 96.5
cd0581097 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrol 96.48
PLN02316 1036 synthase/transferase 96.44
PRK05402 726 glycogen branching enzyme; Provisional 96.42
cd05815101 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DP 95.61
TIGR02104 605 pulA_typeI pullulanase, type I. Pullulan is an unu 95.47
PLN02316 1036 synthase/transferase 95.0
PRK10439 411 enterobactin/ferric enterobactin esterase; Provisi 94.42
PF0342387 CBM_25: Carbohydrate binding domain (family 25); I 94.36
PF11806122 DUF3327: Domain of unknown function (DUF3327); Int 94.03
cd05806112 CBM20_laforin Laforin protein tyrosine phosphatase 93.56
PLN02950 909 4-alpha-glucanotransferase 93.06
TIGR02100 688 glgX_debranch glycogen debranching enzyme GlgX. Th 93.06
TIGR02102 1111 pullulan_Gpos pullulanase, extracellular, Gram-pos 91.31
PLN02950 909 4-alpha-glucanotransferase 90.3
TIGR02103 898 pullul_strch alpha-1,6-glucosidases, pullulanase-t 89.08
cd02857116 CD_pullulan_degrading_enzymes_N_term CD and pullul 88.96
PRK03705 658 glycogen debranching enzyme; Provisional 88.87
PLN02960 897 alpha-amylase 87.7
PRK14510 1221 putative bifunctional 4-alpha-glucanotransferase/g 82.33
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD) Back     alignment and domain information 
Probab=99.91  E-value=1.2e-24  Score=170.03  Aligned_cols=78  Identities=35%  Similarity=0.699  Sum_probs=71.7

Q ss_pred             ceEEEEEEecCCcEEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeEEEEEEEECCeeecCCCCCee
Q 019065          254 LEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESV  333 (346)
Q Consensus       254 L~~VTF~W~g~AksV~VtGSFNnW~~~IpL~Kd~s~s~~a~~~skesG~FsttL~LPPGrYEYKFIVDGeW~~DP~nPtV  333 (346)
                      +++|+|+|+++|++|+|+|+|++|++.+||.+.            ..+ |++++.||||.|+|||+|||+|++||+.|++
T Consensus         1 ~~~v~f~~~~~a~~V~v~G~F~~W~~~~pm~~~------------~~~-~~~~~~L~~g~y~YkF~Vdg~w~~d~~~~~~   67 (79)
T cd02859           1 MVPTTFVWPGGGKEVYVTGSFDNWKKKIPLEKS------------GKG-FSATLRLPPGKYQYKFIVDGEWRHSPDLPTE   67 (79)
T ss_pred             CeEEEEEEcCCCcEEEEEEEcCCCCccccceEC------------CCC-cEEEEEcCCCCEEEEEEECCEEEeCCCCCcc
Confidence            368999999999999999999999988899985            234 9999999999999999999999999999999


Q ss_pred             cC-CCccceEEE
Q 019065          334 TK-GGICNNILR  344 (346)
Q Consensus       334 tD-~G~vNNVLe  344 (346)
                      .+ .|+.||+|.
T Consensus        68 ~d~~G~~NN~i~   79 (79)
T cd02859          68 TDDEGNVNNVID   79 (79)
T ss_pred             CCCCCcEeeeEC
Confidence            87 799999984

AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
>cd02861 E_set_proteins_like E or "early" set-like proteins Back     alignment and domain information
>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd02858 Esterase_N_term Esterase N-terminal domain Back     alignment and domain information
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies Back     alignment and domain information
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain Back     alignment and domain information
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3 Back     alignment and domain information
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus Back     alignment and domain information
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain Back     alignment and domain information
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK12313 glycogen branching enzyme; Provisional Back     alignment and domain information
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain Back     alignment and domain information
>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>PRK12568 glycogen branching enzyme; Provisional Back     alignment and domain information
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>PLN02447 1,4-alpha-glucan-branching enzyme Back     alignment and domain information
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain Back     alignment and domain information
>PRK14706 glycogen branching enzyme; Provisional Back     alignment and domain information
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>PRK14705 glycogen branching enzyme; Provisional Back     alignment and domain information
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain Back     alignment and domain information
>PRK05402 glycogen branching enzyme; Provisional Back     alignment and domain information
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase Back     alignment and domain information
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase) Back     alignment and domain information
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2 Back     alignment and domain information
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase Back     alignment and domain information
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>PLN02316 synthase/transferase Back     alignment and domain information
>PRK05402 glycogen branching enzyme; Provisional Back     alignment and domain information
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1 Back     alignment and domain information
>TIGR02104 pulA_typeI pullulanase, type I Back     alignment and domain information
>PLN02316 synthase/transferase Back     alignment and domain information
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional Back     alignment and domain information
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity Back     alignment and domain information
>PF11806 DUF3327: Domain of unknown function (DUF3327); InterPro: IPR021764 This entry represents the N-terminal domain of enterochelin esterase Back     alignment and domain information
>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>PLN02950 4-alpha-glucanotransferase Back     alignment and domain information
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX Back     alignment and domain information
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive Back     alignment and domain information
>PLN02950 4-alpha-glucanotransferase Back     alignment and domain information
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type Back     alignment and domain information
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain Back     alignment and domain information
>PRK03705 glycogen debranching enzyme; Provisional Back     alignment and domain information
>PLN02960 alpha-amylase Back     alignment and domain information
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query346
2qlv_B 252 Protein SIP2, protein SPM2; heterotrimer, ATP-bind 8e-19
1z0n_A96 5'-AMP-activated protein kinase, beta-1 subunit; b 4e-18
3nme_A294 Ptpkis1 protein, SEX4 glucan phosphatase; dual spe 6e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
4aee_A 696 Alpha amylase, catalytic region; hydrolase, hypert 7e-05
>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1 Length = 252 Back     alignment and structure
 Score = 83.5 bits (205), Expect = 8e-19
 Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 11/90 (12%)

Query: 257 VEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEI 316
           VEI++   G  V V GSF  W   I + P              +  +   L L PGT+  
Sbjct: 6   VEIRWQQGGSKVYVTGSFTKWRKMIGLIPDS----------DNNGSFHVKLRLLPGTHRF 55

Query: 317 KFIVDGQWKVDPQRESVT-KGGICNNILRV 345
           +FIVD + +V     + T + G   N + V
Sbjct: 56  RFIVDNELRVSDFLPTATDQMGNFVNYIEV 85
>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A Length = 96 Back     alignment and structure
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana} Length = 294 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus} Length = 696 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query346
1z0n_A96 5'-AMP-activated protein kinase, beta-1 subunit; b 99.89
3nme_A294 Ptpkis1 protein, SEX4 glucan phosphatase; dual spe 99.88
2qlv_B 252 Protein SIP2, protein SPM2; heterotrimer, ATP-bind 99.88
4aee_A 696 Alpha amylase, catalytic region; hydrolase, hypert 99.54
4aef_A 645 Neopullulanase (alpha-amylase II); hydrolase, ther 99.23
2z0b_A131 GDE5, KIAA1434, putative glycerophosphodiester pho 98.39
3c8d_A 403 Enterochelin esterase; alpha-beta-alpha sandwich, 98.35
1ac0_A108 Glucoamylase; hydrolase, starch binding domain; HE 97.97
1m7x_A 617 1,4-alpha-glucan branching enzyme; alpha/beta barr 97.69
3k1d_A 722 1,4-alpha-glucan-branching enzyme; mycobacterium t 97.52
3aml_A 755 OS06G0726400 protein; starch-branching, transferas 97.42
1bf2_A 750 Isoamylase; hydrolase, glycosidase, debranching en 96.44
1qho_A686 Alpha-amylase; glycoside hydrolase, starch degrada 96.41
1cyg_A680 Cyclodextrin glucanotransferase; glycosyltransfera 96.36
3vgf_A 558 Malto-oligosyltrehalose trehalohydrolase; alpha/be 96.3
2wsk_A 657 Glycogen debranching enzyme; carbohydrate metaboli 96.07
2bhu_A 602 Maltooligosyltrehalose trehalohydrolase; alpha-amy 96.05
2vn4_A599 Glucoamylase; hydrolase, carbohydrate binding, gly 96.03
3bmv_A683 Cyclomaltodextrin glucanotransferase; glycosidase, 95.96
2vr5_A 718 Glycogen operon protein GLGX; hydrolase, glycosida 95.93
2laa_A104 Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Pa 95.85
1d3c_A686 Cyclodextrin glycosyltransferase; alpha-amylase, p 95.79
1vem_A516 Beta-amylase; beta-alpha-barrels, optimum PH, hydr 95.3
2e8y_A 718 AMYX protein, pullulanase; multiple domain, beta-a 95.04
1wzl_A 585 Alpha-amylase II; pullulan, GH-13, alpha-amylase f 94.91
2fhf_A 1083 Pullulanase; multiple domain, beta-alpha-barrel, a 94.32
1j0h_A 588 Neopullulanase; beta-alpha-barrels, hydrolase; 1.9 93.85
2wan_A 921 Pullulanase; hydrolase, glycoside hydrolase, polys 93.73
4aio_A 884 Limit dextrinase; hydrolase, pullulanase, glycosid 93.66
2ya0_A 714 Putative alkaline amylopullulanase; hydrolase, gly 93.27
3m07_A 618 Putative alpha amylase; IDP00968, csgid, structura 93.19
3faw_A 877 Reticulocyte binding protein; TIM barrel, beta bar 93.18
1gcy_A527 Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-b 92.93
1ji1_A 637 Alpha-amylase I; beta/alpha barrel, hydrolase; 1.6 89.41
1ea9_C 583 Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A 89.3
2wan_A 921 Pullulanase; hydrolase, glycoside hydrolase, polys 89.25
2ya1_A 1014 Putative alkaline amylopullulanase; hydrolase, gly 86.5
2c3v_A102 Alpha-amylase G-6; carbohydrate-binding module, st 81.09
4fch_A 221 Outer membrane protein SUSE; starch binding, extra 80.9
>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A Back     alignment and structure
Probab=99.89  E-value=4.2e-23  Score=165.68  Aligned_cols=83  Identities=34%  Similarity=0.574  Sum_probs=73.5

Q ss_pred             hCCCceEEEEEEecCCcEEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeEEEEEEEECCeeecCCC
Q 019065          250 SLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQ  329 (346)
Q Consensus       250 aLsgL~~VTF~W~g~AksV~VtGSFNnW~~~IpL~Kd~s~s~~a~~~skesG~FsttL~LPPGrYEYKFIVDGeW~~DP~  329 (346)
                      +-...++|+|+|...|++|+|+|+||+|+ .++|.+.             .|.|++++.|+||.|+|||+|||+|++||.
T Consensus         6 ~~~~~~~v~F~wap~a~~V~v~GdFn~W~-~~~m~~~-------------~g~w~~~v~l~~G~~~YKf~VdG~~~~DP~   71 (96)
T 1z0n_A            6 APAQARPTVFRWTGGGKEVYLSGSFNNWS-KLPMTRS-------------QNNFVAILDLPEGEHQYKFFVDGQWTHDPS   71 (96)
T ss_dssp             ----CEEEEEEECSCCSCEEEEEGGGTTC-CEECEEE-------------TTEEEEEEEECSEEEEEEEEETTEEECCTT
T ss_pred             CCCCceEEEEEECCCCcEEEEEEEeCCCc-cccCEEC-------------CCEEEEEEEccCCCEEEEEEECCeEEcCCC
Confidence            34567999999998899999999999999 7899862             589999999999999999999999999999


Q ss_pred             CCeecC-CCccceEEEeC
Q 019065          330 RESVTK-GGICNNILRVI  346 (346)
Q Consensus       330 nPtVtD-~G~vNNVLeVe  346 (346)
                      .|++.+ .|+.||+|.|.
T Consensus        72 ~~~~~d~~G~~Nnvi~V~   89 (96)
T 1z0n_A           72 EPIVTSQLGTVNNIIQVK   89 (96)
T ss_dssp             SCEEECTTSCEEEEEEEC
T ss_pred             CCeEECCCCCEeEEEEEc
Confidence            999887 79999999984
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana} Back     alignment and structure
>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1 Back     alignment and structure
>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus} Back     alignment and structure
>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus} Back     alignment and structure
>2z0b_A GDE5, KIAA1434, putative glycerophosphodiester phosphodiesterase; CBM20 domain, starch-binding, hydrolase, STR genomics, NPPSFA; 2.00A {Homo sapiens} Back     alignment and structure
>3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A* Back     alignment and structure
>1ac0_A Glucoamylase; hydrolase, starch binding domain; HET: GLC BGC GLO; NMR {Aspergillus niger} SCOP: b.3.1.1 PDB: 1acz_A* 1kul_A 1kum_A Back     alignment and structure
>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A* Back     alignment and structure
>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis} Back     alignment and structure
>3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Back     alignment and structure
>1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A {Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 Back     alignment and structure
>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A* Back     alignment and structure
>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 Back     alignment and structure
>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A Back     alignment and structure
>2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase, glycosidase, ISO-amylase glycosyl hydrolase, glycogen metabolism; 2.25A {Escherichia coli k-12} Back     alignment and structure
>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A* Back     alignment and structure
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A* Back     alignment and structure
>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A Back     alignment and structure
>2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl hydrolase, glycogen debraching; HET: GLC A16; 2.8A {Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A Back     alignment and structure
>2laa_A Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Paenibacillus polymyxa} PDB: 2lab_A Back     alignment and structure
>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ... Back     alignment and structure
>1vem_A Beta-amylase; beta-alpha-barrels, optimum PH, hydrolase; HET: GLC; 1.85A {Bacillus cereus} SCOP: b.3.1.1 c.1.8.1 PDB: 1b90_A* 1j0y_A* 1j0z_A* 1j10_A* 1b9z_A* 1j12_A* 1j18_A* 1j11_A* 5bca_A 1veo_A* 1itc_A* 1ven_A* 1vep_A* 1cqy_A Back     alignment and structure
>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A* Back     alignment and structure
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A Back     alignment and structure
>2fhf_A Pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, complex with maltotetraose, hydrolase; HET: GLC; 1.65A {Klebsiella aerogenes} SCOP: b.1.18.2 b.1.18.2 b.3.1.3 b.71.1.1 c.1.8.1 PDB: 2fh6_A* 2fh8_A* 2fhb_A* 2fhc_A* 2fgz_A* Back     alignment and structure
>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A* Back     alignment and structure
>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus} Back     alignment and structure
>4aio_A Limit dextrinase; hydrolase, pullulanase, glycoside hydrolase family 13; 1.90A {Hordeum vulgare} PDB: 2x4c_A* 2y4s_A* 2y5e_A* 2x4b_A Back     alignment and structure
>2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; 1.85A {Streptococcus pneumoniae} PDB: 2ya2_A* Back     alignment and structure
>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp} Back     alignment and structure
>3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A* Back     alignment and structure
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A* Back     alignment and structure
>1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A* 2d0g_A* 2d0h_A* 1izk_A Back     alignment and structure
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 Back     alignment and structure
>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus} Back     alignment and structure
>2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; HET: BGC GLC; 2.25A {Streptococcus pneumoniae} Back     alignment and structure
>2c3v_A Alpha-amylase G-6; carbohydrate-binding module, starch binding, carbohydrate binding, glycoside hydrolase, amylose, amylopectin; HET: TYI; 1.39A {Bacillus halodurans} PDB: 2c3v_B* 2c3w_A* 2c3x_A* Back     alignment and structure
>4fch_A Outer membrane protein SUSE; starch binding, extracellular, carbohydrate-B protein; HET: GLC; 1.30A {Bacteroides thetaiotaomicron} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 346
d1z0na187 b.1.18.21 (A:77-163) 5'-AMP-activated protein kina 2e-17
d2qlvb187 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisi 9e-15
>d1z0na1 b.1.18.21 (A:77-163) 5'-AMP-activated protein kinase subunit beta-1 {Rattus norvegicus [TaxId: 10116]} Length = 87 Back     information, alignment and structure

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: 5'-AMP-activated protein kinase subunit beta-1
species: Rattus norvegicus [TaxId: 10116]

 Score = 74.6 bits (183), Expect = 2e-17
 Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 15/90 (16%)

Query: 257 VEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEI 316
              +++G G+ V ++GSFN W               +   +R    +  +L L  G ++ 
Sbjct: 4   TVFRWTGGGKEVYLSGSFNNWS--------------KLPMTRSQNNFVAILDLPEGEHQY 49

Query: 317 KFIVDGQWKVDPQRESVTKG-GICNNILRV 345
           KF VDGQW  DP    VT   G  NNI++V
Sbjct: 50  KFFVDGQWTHDPSEPIVTSQLGTVNNIIQV 79
>d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 87 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query346
d2qlvb187 SIP2 {Saccharomyces cerevisiae [TaxId: 4932]} 99.94
d1z0na187 5'-AMP-activated protein kinase subunit beta-1 {Ra 99.92
d2bhua197 Glycosyltrehalose trehalohydrolase, N-terminal dom 98.41
d1m7xa1110 1,4-alpha-glucan branching enzyme, N-terminal doma 98.33
d1qhoa2110 Cyclodextrin glycosyltransferase, C-terminal domai 98.11
d1kula_108 Glucoamylase, granular starch-binding domain {Aspe 97.89
d1cyga2106 Cyclodextrin glycosyltransferase, C-terminal domai 97.88
d3bmva2105 Cyclodextrin glycosyltransferase, C-terminal domai 97.83
d1eh9a190 Glycosyltrehalose trehalohydrolase, N-terminal dom 97.68
d1vema199 beta-amylase {Bacillus cereus [TaxId: 1396]} 97.19
d2fhfa1115 Pullulanase PulA {Klebsiella pneumoniae [TaxId: 57 95.91
d1bf2a1162 Isoamylase, N-terminal domain N {Pseudomonas amylo 95.72
d3c8da1145 Enterochelin esterase {Shigella flexneri 2a str. 2 88.68
>d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: SIP2
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=99.94  E-value=3.5e-27  Score=183.43  Aligned_cols=85  Identities=32%  Similarity=0.441  Sum_probs=76.8

Q ss_pred             CCceEEEEEEecCCcEEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeEEEEEEEECCeeecCCCCC
Q 019065          252 SGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRE  331 (346)
Q Consensus       252 sgL~~VTF~W~g~AksV~VtGSFNnW~~~IpL~Kd~s~s~~a~~~skesG~FsttL~LPPGrYEYKFIVDGeW~~DP~nP  331 (346)
                      +.++||+|+|+++|++|+|+|+|++|++..+|.+..          ..+|.|.+++.||||.|+|||+|||+|++||.+|
T Consensus         1 s~~vpv~f~w~~~g~~V~v~GsFn~W~~~~~~~~~~----------~~~g~~~~~l~l~~G~y~YKFiVDG~w~~d~~~p   70 (87)
T d2qlvb1           1 SLMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDS----------DNNGSFHVKLRLLPGTHRFRFIVDNELRVSDFLP   70 (87)
T ss_dssp             CCCEEEEEEECSCCSCEEEEEGGGTTSSCEECEECS----------SSTTCEEEEEEECSEEEEEEEEETTEEECCTTSC
T ss_pred             CeEEEEEEEECCCCeEEEEEEEecCcCccccccccc----------CCCccEEEEEeCCCCCEEEEEEECCcEEcCCCCC
Confidence            357899999999999999999999999887766532          3579999999999999999999999999999999


Q ss_pred             eecC-CCccceEEEeC
Q 019065          332 SVTK-GGICNNILRVI  346 (346)
Q Consensus       332 tVtD-~G~vNNVLeVe  346 (346)
                      ++.+ .|+.||+|.|+
T Consensus        71 ~~~d~~G~~nnvi~V~   86 (87)
T d2qlvb1          71 TATDQMGNFVNYIEVR   86 (87)
T ss_dssp             EEBCSSCCCEEEEEEC
T ss_pred             eeECCCCCEeEEEEEE
Confidence            9887 79999999985
>d1z0na1 b.1.18.21 (A:77-163) 5'-AMP-activated protein kinase subunit beta-1 {Rattus norvegicus [TaxId: 10116]} Back     information, alignment and structure
>d2bhua1 b.1.18.2 (A:14-110) Glycosyltrehalose trehalohydrolase, N-terminal domain N {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1m7xa1 b.1.18.2 (A:117-226) 1,4-alpha-glucan branching enzyme, N-terminal domain N {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qhoa2 b.3.1.1 (A:577-686) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]} Back     information, alignment and structure
>d1kula_ b.3.1.1 (A:) Glucoamylase, granular starch-binding domain {Aspergillus niger [TaxId: 5061]} Back     information, alignment and structure
>d1cyga2 b.3.1.1 (A:575-680) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d3bmva2 b.3.1.1 (A:579-683) Cyclodextrin glycosyltransferase, C-terminal domain {Thermoanaerobacterium [TaxId: 28895]} Back     information, alignment and structure
>d1eh9a1 b.1.18.2 (A:1-90) Glycosyltrehalose trehalohydrolase, N-terminal domain N {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]} Back     information, alignment and structure
>d1vema1 b.3.1.1 (A:418-516) beta-amylase {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d2fhfa1 b.1.18.2 (A:288-402) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]} Back     information, alignment and structure
>d1bf2a1 b.1.18.2 (A:1-162) Isoamylase, N-terminal domain N {Pseudomonas amyloderamosa [TaxId: 32043]} Back     information, alignment and structure
>d3c8da1 b.1.18.20 (A:6-150) Enterochelin esterase {Shigella flexneri 2a str. 2457T [TaxId: 198215]} Back     information, alignment and structure